Query 036150
Match_columns 77
No_of_seqs 119 out of 246
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 16:54:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036150.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036150hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_m 60S ribosomal protein L 99.8 5.7E-21 2E-25 126.7 2.9 50 8-57 37-86 (92)
2 3j21_i 50S ribosomal protein L 99.8 4.5E-21 1.6E-25 125.2 2.4 43 8-50 36-78 (83)
3 3izc_m 60S ribosomal protein R 99.8 7.3E-21 2.5E-25 126.3 2.8 50 8-57 37-86 (92)
4 3jyw_9 60S ribosomal protein L 99.8 1.3E-21 4.5E-26 125.0 -1.4 43 8-50 27-69 (72)
5 4a17_Y RPL37A, 60S ribosomal p 99.8 1.7E-20 5.8E-25 126.9 3.6 50 8-57 37-86 (103)
6 1ffk_W Ribosomal protein L37AE 99.8 1.9E-20 6.5E-25 119.5 3.6 45 7-51 27-71 (73)
7 3cc2_Z 50S ribosomal protein L 99.7 6E-19 2.1E-23 121.1 2.7 45 8-52 61-105 (116)
8 1vq8_Z 50S ribosomal protein L 99.7 3.3E-18 1.1E-22 110.2 2.7 45 8-52 28-72 (83)
9 3j21_g 50S ribosomal protein L 97.4 2.4E-05 8.2E-10 46.8 -0.0 25 6-34 13-37 (51)
10 1dl6_A Transcription factor II 95.3 0.004 1.4E-07 36.8 0.7 37 4-40 8-45 (58)
11 3j20_Y 30S ribosomal protein S 94.1 0.031 1.1E-06 32.4 2.3 27 9-35 21-47 (50)
12 1l1o_C Replication protein A 7 94.0 0.021 7.2E-07 39.0 1.7 34 8-42 44-79 (181)
13 1pft_A TFIIB, PFTFIIBN; N-term 93.6 0.018 6.1E-07 32.1 0.7 32 7-38 5-37 (50)
14 3u50_C Telomerase-associated p 93.2 0.032 1.1E-06 39.1 1.5 33 8-42 43-75 (172)
15 1gh9_A 8.3 kDa protein (gene M 92.3 0.095 3.3E-06 32.5 2.6 32 5-38 2-33 (71)
16 4gop_C Putative uncharacterize 91.1 0.077 2.6E-06 39.9 1.6 35 8-43 309-345 (444)
17 1nui_A DNA primase/helicase; z 90.2 0.14 4.8E-06 35.4 2.1 32 3-34 10-42 (255)
18 2k4x_A 30S ribosomal protein S 88.4 0.17 5.7E-06 29.8 1.2 28 8-35 19-46 (55)
19 2xzm_9 RPS31E; ribosome, trans 85.7 0.44 1.5E-05 33.9 2.3 29 8-36 114-142 (189)
20 1qxf_A GR2, 30S ribosomal prot 85.4 0.52 1.8E-05 29.5 2.3 36 1-36 1-37 (66)
21 1qyp_A RNA polymerase II; tran 84.9 1.1 3.6E-05 25.4 3.3 30 7-36 15-54 (57)
22 3o9x_A Uncharacterized HTH-typ 74.9 4.5 0.00015 24.8 4.0 31 8-38 3-49 (133)
23 4bbr_M Transcription initiatio 73.6 1.5 5.1E-05 32.6 1.8 31 7-37 21-54 (345)
24 1twf_I B12.6, DNA-directed RNA 71.5 5.2 0.00018 25.9 3.9 32 7-38 4-39 (122)
25 3ga8_A HTH-type transcriptiona 70.9 7.4 0.00025 22.9 4.2 30 8-37 3-48 (78)
26 2kvh_A Zinc finger and BTB dom 70.5 2.2 7.6E-05 18.4 1.4 11 26-36 4-14 (27)
27 3u5c_f 40S ribosomal protein S 69.9 1.5 5.2E-05 29.4 1.1 26 10-35 121-148 (152)
28 1lko_A Rubrerythrin all-iron(I 69.8 3.6 0.00012 28.1 2.9 20 18-37 148-167 (191)
29 3k1f_M Transcription initiatio 67.6 1.8 6.2E-05 31.9 1.2 32 6-37 20-54 (197)
30 3k7a_M Transcription initiatio 67.3 0.7 2.4E-05 34.0 -1.1 30 7-36 21-53 (345)
31 2m0f_A Zinc finger and BTB dom 64.6 2.8 9.5E-05 17.8 1.1 12 25-36 2-13 (29)
32 1twf_L ABC10-alpha, DNA-direct 63.0 0.82 2.8E-05 28.1 -1.2 27 8-35 29-55 (70)
33 3a43_A HYPD, hydrogenase nicke 62.6 3.5 0.00012 27.3 1.7 18 22-39 67-84 (139)
34 2con_A RUH-035 protein, NIN on 61.9 2.7 9.2E-05 26.5 1.0 17 9-25 32-48 (79)
35 2kvg_A Zinc finger and BTB dom 61.8 4.3 0.00015 17.6 1.5 11 26-36 4-14 (27)
36 2kvf_A Zinc finger and BTB dom 61.5 4.4 0.00015 17.3 1.5 11 26-36 4-14 (28)
37 2m0d_A Zinc finger and BTB dom 60.7 4.6 0.00016 17.1 1.4 11 26-36 4-14 (30)
38 3f6q_B LIM and senescent cell 58.9 6.5 0.00022 21.3 2.2 40 3-42 4-56 (72)
39 2elx_A Zinc finger protein 406 58.9 4.8 0.00017 18.0 1.4 12 26-37 8-19 (35)
40 3j20_W 30S ribosomal protein S 58.0 6 0.00021 24.3 2.1 34 3-36 11-45 (63)
41 3h0g_I DNA-directed RNA polyme 57.4 3.3 0.00011 26.5 0.9 31 8-38 5-39 (113)
42 2kdx_A HYPA, hydrogenase/ureas 56.8 6.4 0.00022 24.9 2.1 21 20-40 68-88 (119)
43 2hf1_A Tetraacyldisaccharide-1 56.1 6.1 0.00021 23.9 1.8 32 4-35 5-36 (68)
44 1srk_A Zinc finger protein ZFP 56.0 6 0.0002 17.9 1.5 13 25-37 7-19 (35)
45 2elm_A Zinc finger protein 406 55.8 6.3 0.00022 18.4 1.6 13 25-37 9-21 (37)
46 4esj_A Type-2 restriction enzy 55.4 5 0.00017 30.5 1.7 34 8-41 35-85 (257)
47 3cng_A Nudix hydrolase; struct 54.7 6.5 0.00022 25.3 1.9 25 9-33 5-33 (189)
48 2els_A Zinc finger protein 406 54.6 6.4 0.00022 18.0 1.4 13 25-37 9-21 (36)
49 2lvu_A Zinc finger and BTB dom 59.4 2.6 9E-05 18.0 0.0 12 26-37 3-14 (26)
50 1znf_A 31ST zinc finger from X 52.5 3.4 0.00011 17.5 0.2 11 26-36 2-12 (27)
51 2js4_A UPF0434 protein BB2007; 52.5 6.5 0.00022 23.9 1.6 31 5-35 6-36 (70)
52 2en2_A B-cell lymphoma 6 prote 52.2 7 0.00024 18.5 1.4 13 25-37 11-23 (42)
53 1rik_A E6APC1 peptide; E6-bind 52.2 7.2 0.00025 16.6 1.4 11 26-36 3-13 (29)
54 2qkd_A Zinc finger protein ZPR 52.1 17 0.00058 28.5 4.2 34 9-42 14-62 (404)
55 2jr6_A UPF0434 protein NMA0874 52.0 6.2 0.00021 23.8 1.4 31 5-35 6-36 (68)
56 1tfi_A Transcriptional elongat 51.6 12 0.00041 21.2 2.5 29 7-35 9-47 (50)
57 2elp_A Zinc finger protein 406 51.3 7.5 0.00026 17.8 1.4 13 25-37 9-21 (37)
58 2m0e_A Zinc finger and BTB dom 51.3 3.2 0.00011 17.5 0.0 11 26-36 3-13 (29)
59 1wii_A Hypothetical UPF0222 pr 51.3 22 0.00075 22.4 4.0 32 6-37 22-59 (85)
60 2elq_A Zinc finger protein 406 51.2 7.4 0.00025 17.7 1.4 12 25-36 9-20 (36)
61 2elt_A Zinc finger protein 406 49.2 8.6 0.00029 17.3 1.4 13 25-37 9-21 (36)
62 2elo_A Zinc finger protein 406 48.8 5.6 0.00019 18.2 0.7 12 26-37 10-21 (37)
63 1ard_A Yeast transcription fac 48.5 4.2 0.00014 17.3 0.2 11 26-36 3-13 (29)
64 2epc_A Zinc finger protein 32; 48.3 9.1 0.00031 17.9 1.5 13 25-37 11-23 (42)
65 1yuz_A Nigerythrin; rubrythrin 48.2 9.2 0.00031 26.5 2.0 15 23-37 169-183 (202)
66 2eoz_A Zinc finger protein 473 47.6 9.4 0.00032 18.5 1.5 13 25-37 12-24 (46)
67 2elr_A Zinc finger protein 406 47.1 4.5 0.00015 18.4 0.2 12 25-36 9-20 (36)
68 2apo_B Ribosome biogenesis pro 47.0 5.8 0.0002 23.9 0.7 24 5-34 4-27 (60)
69 2ytp_A Zinc finger protein 484 46.7 9.5 0.00032 18.5 1.4 13 25-37 12-24 (46)
70 2ept_A Zinc finger protein 32; 46.6 9.7 0.00033 17.9 1.4 13 25-37 10-22 (41)
71 1klr_A Zinc finger Y-chromosom 46.4 4 0.00014 17.3 -0.1 11 26-36 3-13 (30)
72 2emy_A Zinc finger protein 268 46.0 9.9 0.00034 18.3 1.4 13 25-37 12-24 (46)
73 2elv_A Zinc finger protein 406 46.0 11 0.00036 17.2 1.5 12 25-36 9-20 (36)
74 2yts_A Zinc finger protein 484 45.8 10 0.00034 18.2 1.4 13 25-37 12-24 (46)
75 2el5_A Zinc finger protein 268 45.7 10 0.00035 17.8 1.4 13 25-37 10-22 (42)
76 6rxn_A Rubredoxin; electron tr 45.6 9.6 0.00033 21.6 1.5 13 24-36 3-15 (46)
77 2ytf_A Zinc finger protein 268 45.5 10 0.00035 18.2 1.4 13 25-37 12-24 (46)
78 2yrj_A Zinc finger protein 473 45.5 10 0.00035 18.2 1.4 13 25-37 12-24 (46)
79 2pk7_A Uncharacterized protein 45.5 6.3 0.00021 23.9 0.7 31 5-35 6-36 (69)
80 2epu_A Zinc finger protein 32; 44.9 11 0.00039 18.1 1.5 13 25-37 12-24 (45)
81 2eox_A Zinc finger protein 473 44.7 12 0.00039 17.9 1.5 13 25-37 12-24 (44)
82 2eof_A Zinc finger protein 268 44.7 11 0.00036 17.9 1.4 13 25-37 12-24 (44)
83 2ep3_A Zinc finger protein 484 44.4 11 0.00037 18.2 1.4 13 25-37 12-24 (46)
84 1p7a_A BF3, BKLF, kruppel-like 44.3 5.5 0.00019 18.2 0.2 11 26-36 12-22 (37)
85 2em3_A Zinc finger protein 28 44.1 11 0.00038 18.1 1.4 12 25-36 12-23 (46)
86 2eow_A Zinc finger protein 347 43.4 12 0.00039 18.0 1.4 13 25-37 12-24 (46)
87 1njq_A Superman protein; zinc- 43.3 12 0.00041 17.4 1.4 12 26-37 7-18 (39)
88 2ab3_A ZNF29; zinc finger prot 43.3 13 0.00046 15.5 1.5 12 26-37 3-16 (29)
89 2emf_A Zinc finger protein 484 43.1 12 0.0004 18.1 1.4 13 25-37 12-24 (46)
90 2ysp_A Zinc finger protein 224 43.0 12 0.00042 18.0 1.5 13 25-37 12-24 (46)
91 2emi_A Zinc finger protein 484 43.0 12 0.0004 18.0 1.4 13 25-37 12-24 (46)
92 2lvr_A Zinc finger and BTB dom 48.9 5.1 0.00018 17.1 0.0 11 26-36 4-14 (30)
93 2ema_A Zinc finger protein 347 42.8 12 0.00041 18.0 1.4 12 25-36 12-23 (46)
94 2emh_A Zinc finger protein 484 42.6 12 0.00041 18.0 1.4 13 25-37 12-24 (46)
95 2jny_A Uncharacterized BCR; st 42.6 11 0.00037 22.8 1.4 31 5-35 8-38 (67)
96 2emj_A Zinc finger protein 28 42.4 12 0.0004 18.1 1.4 12 25-36 12-23 (46)
97 1d0q_A DNA primase; zinc-bindi 42.4 9 0.00031 23.7 1.1 48 8-57 38-89 (103)
98 2yto_A Zinc finger protein 484 42.2 12 0.00042 18.0 1.4 13 25-37 12-24 (46)
99 2en1_A Zinc finger protein 224 41.6 13 0.00045 17.8 1.5 13 25-37 12-24 (46)
100 2em2_A Zinc finger protein 28 41.5 13 0.00044 18.0 1.4 13 25-37 12-24 (46)
101 2emb_A Zinc finger protein 473 41.4 13 0.00044 17.7 1.4 13 25-37 12-24 (44)
102 2yu5_A Zinc finger protein 473 41.4 13 0.00044 17.7 1.4 13 25-37 12-24 (44)
103 2emx_A Zinc finger protein 268 41.3 13 0.00043 17.7 1.4 13 25-37 10-22 (44)
104 2epw_A Zinc finger protein 268 41.3 13 0.00045 17.8 1.4 13 25-37 12-24 (46)
105 1paa_A Yeast transcription fac 41.1 7.2 0.00025 16.7 0.4 11 26-36 3-13 (30)
106 1zso_A Hypothetical protein; s 40.9 19 0.00066 24.9 2.7 32 3-34 33-79 (164)
107 2eml_A Zinc finger protein 28 40.9 13 0.00045 17.8 1.4 13 25-37 12-24 (46)
108 2eor_A Zinc finger protein 224 40.8 13 0.00045 17.8 1.4 13 25-37 12-24 (46)
109 2xzm_6 RPS27E; ribosome, trans 40.8 14 0.00047 23.7 1.8 34 3-36 28-62 (81)
110 2epv_A Zinc finger protein 268 40.8 13 0.00046 17.8 1.4 13 25-37 12-24 (44)
111 2ytg_A ZFP-95, zinc finger pro 40.4 14 0.00046 17.8 1.4 13 25-37 12-24 (46)
112 2lvt_A Zinc finger and BTB dom 46.5 5.9 0.0002 17.0 0.0 11 26-36 3-13 (29)
113 2en8_A Zinc finger protein 224 39.9 14 0.00048 17.7 1.4 13 25-37 12-24 (46)
114 2ep2_A Zinc finger protein 484 39.9 14 0.00048 17.7 1.4 13 25-37 12-24 (46)
115 2em9_A Zinc finger protein 224 39.9 14 0.00048 17.7 1.4 13 25-37 12-24 (46)
116 2ytk_A Zinc finger protein 347 39.8 14 0.00048 17.7 1.4 13 25-37 12-24 (46)
117 2v3b_B Rubredoxin 2, rubredoxi 39.8 16 0.00054 21.2 1.8 13 25-37 3-15 (55)
118 2em7_A Zinc finger protein 224 39.7 14 0.00049 17.7 1.4 13 25-37 12-24 (46)
119 2eme_A Zinc finger protein 473 39.7 14 0.00049 17.6 1.4 13 25-37 12-24 (46)
120 2ene_A Zinc finger protein 347 39.6 14 0.00049 17.7 1.4 13 25-37 12-24 (46)
121 2eq0_A Zinc finger protein 347 39.5 14 0.00049 17.7 1.4 13 25-37 12-24 (46)
122 2ytj_A Zinc finger protein 484 39.5 14 0.00049 17.7 1.4 13 25-37 12-24 (46)
123 2en3_A ZFP-95, zinc finger pro 39.3 15 0.00051 17.6 1.5 13 25-37 12-24 (46)
124 2yu8_A Zinc finger protein 347 39.2 15 0.0005 17.7 1.4 13 25-37 12-24 (46)
125 3iuf_A Zinc finger protein UBI 38.9 14 0.00049 18.5 1.4 11 26-36 8-18 (48)
126 2iyb_E Testin, TESS, TES; LIM 38.9 20 0.00069 19.6 2.1 34 9-42 4-49 (65)
127 2emm_A ZFP-95, zinc finger pro 38.7 15 0.00051 17.5 1.4 13 25-37 12-24 (46)
128 2eoy_A Zinc finger protein 473 38.6 15 0.00052 17.7 1.4 13 25-37 12-24 (46)
129 2ep0_A Zinc finger protein 28 38.5 16 0.00054 17.6 1.5 13 25-37 12-24 (46)
130 2aus_D NOP10, ribosome biogene 38.5 9.3 0.00032 23.1 0.7 23 6-34 4-26 (60)
131 2em4_A Zinc finger protein 28 38.3 15 0.00052 17.7 1.4 12 26-37 13-24 (46)
132 1yui_A GAGA-factor; complex (D 38.3 15 0.00052 18.5 1.4 13 25-37 24-36 (54)
133 3pwf_A Rubrerythrin; non heme 38.2 16 0.00056 24.7 2.0 14 24-37 137-150 (170)
134 2eoo_A ZFP-95, zinc finger pro 38.0 16 0.00053 17.6 1.4 13 25-37 12-24 (46)
135 2eoj_A Zinc finger protein 268 37.8 10 0.00036 18.0 0.7 13 25-37 12-24 (44)
136 2el6_A Zinc finger protein 268 37.7 15 0.00053 17.7 1.4 13 25-37 12-24 (46)
137 2eq3_A Zinc finger protein 347 37.5 9.8 0.00034 18.3 0.6 13 25-37 12-24 (46)
138 2en6_A Zinc finger protein 268 37.5 17 0.00058 17.4 1.5 13 25-37 12-24 (46)
139 1yk4_A Rubredoxin, RD; electro 37.4 18 0.00061 20.7 1.8 13 25-37 2-14 (52)
140 2emp_A Zinc finger protein 347 37.2 16 0.00056 17.5 1.4 13 25-37 12-24 (46)
141 1dxg_A Desulforedoxin; non-hem 37.0 18 0.00063 18.9 1.7 13 24-36 5-17 (36)
142 2enc_A Zinc finger protein 224 36.6 17 0.00058 17.4 1.4 13 25-37 12-24 (46)
143 2el4_A Zinc finger protein 268 36.5 17 0.00057 17.4 1.4 13 25-37 12-24 (46)
144 3u5c_b RP61, YS20, 40S ribosom 36.5 11 0.00037 24.3 0.8 34 3-36 30-64 (82)
145 2ytd_A Zinc finger protein 473 36.4 17 0.00059 17.4 1.4 13 25-37 12-24 (46)
146 1fv5_A First zinc finger of U- 36.2 11 0.00038 19.3 0.7 11 26-36 9-19 (36)
147 2em5_A ZFP-95, zinc finger pro 35.8 18 0.00061 17.4 1.4 13 25-37 12-24 (46)
148 3iz6_X 40S ribosomal protein S 35.5 8.5 0.00029 24.9 0.2 34 3-36 32-66 (86)
149 2c6a_A Ubiquitin-protein ligas 35.4 15 0.00051 21.5 1.2 11 24-34 12-22 (46)
150 1rim_A E6APC2 peptide; E6-bind 35.4 7.9 0.00027 17.8 -0.0 11 26-36 3-13 (33)
151 2em8_A Zinc finger protein 224 35.2 19 0.00065 17.3 1.5 12 25-36 12-23 (46)
152 2yso_A ZFP-95, zinc finger pro 35.2 18 0.00063 17.3 1.4 13 25-37 12-24 (46)
153 1wjv_A Cell growth regulating 34.9 22 0.00075 22.6 2.0 34 9-43 12-55 (79)
154 2d9h_A Zinc finger protein 692 34.9 18 0.0006 19.3 1.4 12 25-36 7-18 (78)
155 2drp_A Protein (tramtrack DNA- 34.9 18 0.00061 18.5 1.4 14 24-37 9-22 (66)
156 2lk0_A RNA-binding protein 5; 34.8 15 0.00052 19.0 1.1 11 24-34 4-14 (32)
157 3qt1_I DNA-directed RNA polyme 34.7 8.8 0.0003 25.6 0.1 32 7-38 24-59 (133)
158 2ytb_A Zinc finger protein 32; 34.6 9.2 0.00031 17.9 0.2 13 25-37 11-23 (42)
159 3v2d_5 50S ribosomal protein L 34.4 8.9 0.0003 22.8 0.1 21 7-32 30-50 (60)
160 2kn9_A Rubredoxin; metalloprot 34.2 20 0.0007 22.5 1.8 14 24-37 26-39 (81)
161 1bbo_A Human enhancer-binding 34.2 19 0.00064 17.8 1.4 12 25-36 29-40 (57)
162 2enf_A Zinc finger protein 347 34.1 9.6 0.00033 18.4 0.2 13 25-37 12-24 (46)
163 2emg_A Zinc finger protein 484 34.1 9.5 0.00033 18.4 0.2 12 25-36 12-23 (46)
164 2jrp_A Putative cytoplasmic pr 33.5 20 0.00068 22.7 1.7 34 8-43 3-36 (81)
165 1s24_A Rubredoxin 2; electron 33.2 21 0.00072 22.7 1.8 15 23-37 33-47 (87)
166 2epr_A POZ-, at HOOK-, and zin 32.8 23 0.00078 17.3 1.5 13 25-37 12-24 (48)
167 1h7b_A Anaerobic ribonucleotid 32.8 11 0.00037 30.6 0.4 26 7-33 540-566 (605)
168 2em6_A Zinc finger protein 224 32.6 11 0.00036 18.3 0.2 13 25-37 12-24 (46)
169 1dx8_A Rubredoxin; electron tr 32.4 20 0.00068 21.7 1.5 13 24-36 6-18 (70)
170 2eos_A B-cell lymphoma 6 prote 32.0 11 0.00038 17.8 0.2 12 25-36 11-22 (42)
171 1f2i_G Fusion of N-terminal 17 31.7 21 0.00073 18.6 1.4 13 24-36 48-60 (73)
172 2en7_A Zinc finger protein 268 31.7 9 0.00031 18.1 -0.1 12 26-37 13-24 (44)
173 1k81_A EIF-2-beta, probable tr 31.6 37 0.0013 18.0 2.3 27 9-35 2-31 (36)
174 2ep1_A Zinc finger protein 484 31.2 9.4 0.00032 18.3 -0.1 12 25-36 12-23 (46)
175 2en9_A Zinc finger protein 28 31.0 12 0.00039 18.2 0.2 12 25-36 12-23 (46)
176 2yth_A Zinc finger protein 224 30.7 12 0.00041 18.1 0.2 13 25-37 12-24 (46)
177 2eop_A Zinc finger protein 268 30.5 12 0.00041 17.9 0.2 13 25-37 12-24 (46)
178 2eon_A ZFP-95, zinc finger pro 30.5 12 0.00041 18.2 0.2 11 26-36 13-23 (46)
179 2eoe_A Zinc finger protein 347 30.0 15 0.00053 17.5 0.6 13 25-37 12-24 (46)
180 1vk6_A NADH pyrophosphatase; 1 30.0 19 0.00064 25.6 1.2 26 9-34 109-134 (269)
181 2yte_A Zinc finger protein 473 29.8 13 0.00044 17.4 0.2 11 26-36 11-21 (42)
182 2kfq_A FP1; protein, de novo p 29.7 6.3 0.00022 17.9 -0.9 11 26-36 3-13 (32)
183 2ytn_A Zinc finger protein 347 29.7 12 0.00043 17.9 0.2 13 25-37 12-24 (46)
184 3uk3_C Zinc finger protein 217 29.7 25 0.00084 17.4 1.4 13 24-36 31-43 (57)
185 2eq1_A Zinc finger protein 347 29.5 11 0.00038 18.1 -0.0 13 25-37 12-24 (46)
186 1x5w_A Zinc finger protein 64, 29.5 24 0.00082 18.4 1.4 12 25-36 9-20 (70)
187 2ely_A Zinc finger protein 224 29.4 13 0.00044 18.0 0.2 13 25-37 12-24 (46)
188 2yrm_A B-cell lymphoma 6 prote 29.2 13 0.00045 17.8 0.2 12 25-36 10-21 (43)
189 1p91_A Ribosomal RNA large sub 29.0 28 0.00097 22.7 1.9 24 8-33 3-26 (269)
190 2eov_A Zinc finger protein 484 28.8 13 0.00046 17.7 0.2 13 25-37 12-24 (46)
191 2gmg_A Hypothetical protein PF 28.8 15 0.0005 24.4 0.4 16 20-35 62-77 (105)
192 2yti_A Zinc finger protein 347 28.7 10 0.00034 18.3 -0.3 12 26-37 13-24 (46)
193 2eou_A Zinc finger protein 473 28.6 12 0.00042 17.9 0.0 12 25-36 12-23 (44)
194 1pqv_S STP-alpha, transcriptio 28.6 43 0.0015 24.6 3.0 28 8-35 269-306 (309)
195 2enh_A Zinc finger protein 28 28.1 14 0.00047 17.8 0.2 12 26-37 13-24 (46)
196 2eom_A ZFP-95, zinc finger pro 28.1 12 0.00042 18.1 -0.0 11 26-36 13-23 (46)
197 2cr8_A MDM4 protein; ZF-ranbp 28.0 24 0.00081 21.3 1.2 10 25-34 11-20 (53)
198 2eps_A POZ-, at HOOK-, and zin 27.9 28 0.00096 17.5 1.4 12 25-36 12-23 (54)
199 2ytq_A Zinc finger protein 268 27.7 14 0.00049 17.8 0.2 11 26-36 13-23 (46)
200 3po3_S Transcription elongatio 27.6 25 0.00085 24.2 1.5 28 8-35 138-175 (178)
201 2eq4_A Zinc finger protein 224 27.3 14 0.00047 17.7 0.1 13 25-37 12-24 (46)
202 2epq_A POZ-, at HOOK-, and zin 27.1 19 0.00066 17.2 0.6 11 26-36 11-21 (45)
203 2kpi_A Uncharacterized protein 27.0 39 0.0013 19.4 2.1 29 5-35 8-38 (56)
204 2elz_A Zinc finger protein 224 26.9 15 0.00052 17.7 0.2 12 25-36 12-23 (46)
205 2emz_A ZFP-95, zinc finger pro 26.7 14 0.00046 17.9 -0.0 12 25-36 12-23 (46)
206 1x6h_A Transcriptional repress 26.7 30 0.001 18.3 1.4 12 25-36 47-58 (86)
207 1vd4_A Transcription initiatio 26.4 34 0.0012 17.9 1.6 12 25-36 14-25 (62)
208 2lce_A B-cell lymphoma 6 prote 26.3 31 0.0011 18.1 1.4 13 25-37 45-57 (74)
209 3mhs_C SAGA-associated factor 26.2 23 0.00079 23.4 1.0 22 21-42 66-87 (99)
210 2i5o_A DNA polymerase ETA; zin 26.2 31 0.0011 18.9 1.4 14 24-37 8-21 (39)
211 1x6e_A Zinc finger protein 24; 26.2 31 0.001 18.1 1.4 30 7-36 14-53 (72)
212 2epx_A Zinc finger protein 28 26.2 16 0.00054 17.5 0.2 12 25-36 12-23 (47)
213 1e8j_A Rubredoxin; iron-sulfur 26.0 21 0.00073 20.4 0.8 12 25-36 3-14 (52)
214 4gzn_C ZFP-57, zinc finger pro 25.9 30 0.001 19.1 1.4 12 25-36 32-43 (60)
215 2kmk_A Zinc finger protein GFI 25.9 32 0.0011 17.9 1.5 11 26-36 2-12 (82)
216 4rxn_A Rubredoxin; electron tr 25.8 31 0.0011 20.0 1.5 12 25-36 3-14 (54)
217 2ct1_A Transcriptional repress 25.7 31 0.0011 18.3 1.4 12 25-36 15-26 (77)
218 2emk_A Zinc finger protein 28 25.5 17 0.00057 17.5 0.2 12 26-37 13-24 (46)
219 2adr_A ADR1; transcription reg 25.4 33 0.0011 17.1 1.4 12 25-36 30-41 (60)
220 2eq2_A Zinc finger protein 347 25.2 13 0.00044 17.9 -0.3 11 26-36 13-23 (46)
221 2eoh_A Zinc finger protein 28 25.0 15 0.00052 17.7 -0.0 11 26-36 13-23 (46)
222 3nrl_A Uncharacterized protein 24.9 17 0.00058 23.4 0.2 18 26-43 31-48 (81)
223 2epz_A Zinc finger protein 28 24.6 18 0.0006 17.4 0.2 12 25-36 12-23 (46)
224 4ayb_P DNA-directed RNA polyme 24.5 15 0.0005 21.8 -0.1 14 24-37 2-15 (48)
225 1vfy_A Phosphatidylinositol-3- 24.1 31 0.001 20.1 1.2 27 9-39 13-41 (73)
226 2ytr_A Zinc finger protein 347 24.0 14 0.00047 17.7 -0.3 11 26-36 13-23 (46)
227 2xqn_T Testin, TESS; metal-bin 24.0 41 0.0014 20.3 1.9 34 9-42 65-110 (126)
228 2ytt_A Zinc finger protein 473 23.8 14 0.00048 17.8 -0.3 11 26-36 13-23 (46)
229 3w0f_A Endonuclease 8-like 3; 23.7 34 0.0012 25.5 1.7 25 9-34 253-282 (287)
230 2ctu_A Zinc finger protein 483 23.5 43 0.0015 17.0 1.6 14 25-38 18-31 (73)
231 2zkr_2 60S ribosomal protein L 23.5 19 0.00064 23.8 0.2 24 8-34 17-40 (97)
232 2eoq_A Zinc finger protein 224 23.5 17 0.00058 17.4 -0.0 13 25-37 12-24 (46)
233 1zfo_A LAsp-1; LIM domain, zin 23.2 22 0.00074 17.9 0.4 9 27-35 5-13 (31)
234 1x4u_A Zinc finger, FYVE domai 22.8 34 0.0011 20.4 1.2 29 7-39 14-44 (84)
235 1zfd_A SWI5; DNA binding motif 22.6 20 0.0007 15.6 0.2 11 26-36 4-16 (32)
236 2ytm_A Zinc finger protein 28 22.5 17 0.00057 17.6 -0.1 12 25-36 12-23 (46)
237 1bhi_A CRE-BP1, ATF-2; CRE bin 22.3 44 0.0015 15.1 1.4 11 26-36 7-19 (38)
238 2cot_A Zinc finger protein 435 22.3 40 0.0014 17.8 1.4 14 24-37 45-58 (77)
239 2k1p_A Zinc finger RAN-binding 22.3 24 0.00082 18.3 0.5 11 24-34 5-15 (33)
240 3na7_A HP0958; flagellar bioge 22.2 32 0.0011 24.1 1.2 13 6-18 221-233 (256)
241 1wg2_A Zinc finger (AN1-like) 22.2 27 0.00093 21.3 0.8 25 8-39 16-42 (64)
242 2yw8_A RUN and FYVE domain-con 21.9 36 0.0012 20.2 1.2 28 8-39 20-49 (82)
243 2em0_A Zinc finger protein 224 21.6 19 0.00067 17.2 -0.0 13 25-37 12-24 (46)
244 2yrc_A Protein transport prote 21.6 44 0.0015 19.4 1.6 32 4-35 6-43 (59)
245 1a7i_A QCRP2 (LIM1); LIM domai 21.3 82 0.0028 17.5 2.7 36 8-43 8-52 (81)
246 1llm_C Chimera of ZIF23-GCN4; 21.3 42 0.0014 18.2 1.4 11 26-36 4-14 (88)
247 1va1_A Transcription factor SP 21.2 47 0.0016 15.1 1.4 12 25-36 8-21 (37)
248 2k3r_A Ribonuclease P protein 20.7 69 0.0024 20.7 2.5 12 24-35 88-99 (123)
249 1x0t_A Ribonuclease P protein 20.7 72 0.0024 20.5 2.6 12 24-35 93-104 (120)
250 2dmi_A Teashirt homolog 3; zin 20.6 45 0.0015 18.8 1.4 13 25-37 19-31 (115)
251 1a1h_A QGSR zinc finger peptid 20.5 46 0.0016 17.7 1.4 13 24-36 61-73 (90)
252 2k5c_A Uncharacterized protein 20.4 54 0.0018 21.6 1.9 17 25-42 51-67 (95)
253 2wbs_A Krueppel-like factor 4; 20.4 45 0.0015 17.7 1.4 13 24-36 64-76 (89)
254 1z2q_A LM5-1; membrane protein 20.4 40 0.0014 20.1 1.2 29 7-39 21-51 (84)
255 2jne_A Hypothetical protein YF 20.2 64 0.0022 21.4 2.3 34 8-43 33-66 (101)
256 2au3_A DNA primase; zinc ribbo 20.2 31 0.0011 25.6 0.9 26 8-33 35-63 (407)
257 2a20_A Regulating synaptic mem 20.1 7.5 0.00026 24.1 -2.1 30 4-33 30-59 (62)
258 2cu8_A Cysteine-rich protein 2 20.1 65 0.0022 17.8 2.0 35 8-42 10-53 (76)
No 1
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=99.81 E-value=5.7e-21 Score=126.72 Aligned_cols=50 Identities=44% Similarity=0.663 Sum_probs=45.1
Q ss_pred eeeCCCCceeeEEeEEEEEeeCCCCcEEeCcccccccccccccHHHHHhh
Q 036150 8 LRRKRTKKYAVKRKAVGIWSCKYCGKVKAGALNAATLAAFTALPAAAAAL 57 (77)
Q Consensus 8 ~~~~~CGK~~VKR~AVGIWkCkkCgkt~AGGAYtp~Tpag~s~~~~~~~~ 57 (77)
..||.|||++|||+++|||+|++||++||||||+|+||++...+.+-+-|
T Consensus 37 y~CpfCgk~~vkR~a~GIW~C~~Cg~~~AGGAy~~~T~~~~tv~~~irrl 86 (92)
T 3iz5_m 37 YFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRL 86 (92)
T ss_dssp BCCTTTCSSCBEEEETTEEECSSSCCEEECCSSSSCCHHHHHHHHHHHHH
T ss_pred ccCcccCCCeeEecCcceEEcCCCCCEEeCCcccCCCcHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999998877665544
No 2
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.81 E-value=4.5e-21 Score=125.18 Aligned_cols=43 Identities=33% Similarity=0.478 Sum_probs=40.0
Q ss_pred eeeCCCCceeeEEeEEEEEeeCCCCcEEeCccccccccccccc
Q 036150 8 LRRKRTKKYAVKRKAVGIWSCKYCGKVKAGALNAATLAAFTAL 50 (77)
Q Consensus 8 ~~~~~CGK~~VKR~AVGIWkCkkCgkt~AGGAYtp~Tpag~s~ 50 (77)
..||.|||++|||+++|||+|++||++||||||+|+||++...
T Consensus 36 y~CpfCGk~~vkR~a~GIW~C~kCg~~~AGGAy~~~T~~~~t~ 78 (83)
T 3j21_i 36 HTCPVCGRKAVKRISTGIWQCQKCGATFAGGAYLPVTPAGKAV 78 (83)
T ss_dssp BCCSSSCSSCEEEEETTEEEETTTCCEEECCSSSSSCHHHHHH
T ss_pred cCCCCCCCceeEecCcCeEEcCCCCCEEeCCccccCccHhhhh
Confidence 4699999999999999999999999999999999999987653
No 3
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=99.81 E-value=7.3e-21 Score=126.34 Aligned_cols=50 Identities=32% Similarity=0.485 Sum_probs=45.0
Q ss_pred eeeCCCCceeeEEeEEEEEeeCCCCcEEeCcccccccccccccHHHHHhh
Q 036150 8 LRRKRTKKYAVKRKAVGIWSCKYCGKVKAGALNAATLAAFTALPAAAAAL 57 (77)
Q Consensus 8 ~~~~~CGK~~VKR~AVGIWkCkkCgkt~AGGAYtp~Tpag~s~~~~~~~~ 57 (77)
..||.|||++|||+++|||+|++||++||||||+|+||++...+.+-+-|
T Consensus 37 y~CpfCgk~~vkR~a~GIW~C~~C~~~~AGGAy~~~T~~~~tv~~~irrl 86 (92)
T 3izc_m 37 YDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGAYTVSTAAAATVRSTIRRL 86 (92)
T ss_dssp CCCSSSCSSCCEEEETTEEECTTTCCEEECCSSSSCCHHHHHHHHHHHHH
T ss_pred CcCCCCCCceeeecccceEEcCCCCCEEeCCcccCCCcHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999998877665543
No 4
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=99.80 E-value=1.3e-21 Score=125.02 Aligned_cols=43 Identities=35% Similarity=0.542 Sum_probs=40.1
Q ss_pred eeeCCCCceeeEEeEEEEEeeCCCCcEEeCccccccccccccc
Q 036150 8 LRRKRTKKYAVKRKAVGIWSCKYCGKVKAGALNAATLAAFTAL 50 (77)
Q Consensus 8 ~~~~~CGK~~VKR~AVGIWkCkkCgkt~AGGAYtp~Tpag~s~ 50 (77)
..||.|||++|||+++|||+|++||++||||||+|+||+++..
T Consensus 27 y~C~fCgk~~vkR~a~GIW~C~~C~~~~AGGAy~~~T~~~~tv 69 (72)
T 3jyw_9 27 YDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGAYTVSTAAAATV 69 (72)
T ss_dssp BCCSSCCSSCBSBCSSSCBCCSSSCCCCCCSSSSSCCHHHHHH
T ss_pred ccCCCCCCceeEecCCCeEECCCCCCEEeCCccccCCccceee
Confidence 4699999999999999999999999999999999999987654
No 5
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=99.80 E-value=1.7e-20 Score=126.93 Aligned_cols=50 Identities=36% Similarity=0.462 Sum_probs=45.4
Q ss_pred eeeCCCCceeeEEeEEEEEeeCCCCcEEeCcccccccccccccHHHHHhh
Q 036150 8 LRRKRTKKYAVKRKAVGIWSCKYCGKVKAGALNAATLAAFTALPAAAAAL 57 (77)
Q Consensus 8 ~~~~~CGK~~VKR~AVGIWkCkkCgkt~AGGAYtp~Tpag~s~~~~~~~~ 57 (77)
..||.|||++|||+++|||+|++||++||||||+|+||++...+.+-+-|
T Consensus 37 y~CpfCgk~~vKR~a~GIW~C~kCg~~~AGGAy~~~T~~a~tv~~~irrl 86 (103)
T 4a17_Y 37 YGCPFCGKVAVKRAAVGIWKCKPCKKIIAGGAWELTTPPAVTAKTTMNRL 86 (103)
T ss_dssp EECTTTCCEEEEEEETTEEEETTTTEEEECCSSCSSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCceeeecCcceEEcCCCCCEEeCCcccCCCcHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999998877665544
No 6
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=99.80 E-value=1.9e-20 Score=119.50 Aligned_cols=45 Identities=24% Similarity=0.311 Sum_probs=41.1
Q ss_pred eeeeCCCCceeeEEeEEEEEeeCCCCcEEeCcccccccccccccH
Q 036150 7 VLRRKRTKKYAVKRKAVGIWSCKYCGKVKAGALNAATLAAFTALP 51 (77)
Q Consensus 7 ~~~~~~CGK~~VKR~AVGIWkCkkCgkt~AGGAYtp~Tpag~s~~ 51 (77)
-..||.|||++|||+++|||+|++|+++||||||+|+||++...+
T Consensus 27 ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AGGAy~~~T~~~~t~~ 71 (73)
T 1ffk_W 27 KYKCPVCGFPKLKRASTSIWVCGHCGYKIAGGAYTPETVAGKAVM 71 (73)
T ss_pred CccCCCCCCceeEEEEeEEEECCCCCcEEECCCccccccceEEEe
Confidence 346899999999999999999999999999999999999987643
No 7
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=99.73 E-value=6e-19 Score=121.10 Aligned_cols=45 Identities=20% Similarity=0.372 Sum_probs=41.4
Q ss_pred eeeCCCCceeeEEeEEEEEeeCCCCcEEeCcccccccccccccHH
Q 036150 8 LRRKRTKKYAVKRKAVGIWSCKYCGKVKAGALNAATLAAFTALPA 52 (77)
Q Consensus 8 ~~~~~CGK~~VKR~AVGIWkCkkCgkt~AGGAYtp~Tpag~s~~~ 52 (77)
..||.|||++|||.++|||+|++|+++||||||+|+||++...+.
T Consensus 61 ytCPfCGk~~vKR~avGIW~C~~Cgk~fAGGAy~~~T~~~~t~~~ 105 (116)
T 3cc2_Z 61 HACPNCGEDRVDRQGTGIWQCSYCDYKFTGGSYKPETPGGKTVRR 105 (116)
T ss_dssp EECSSSCCEEEEEEETTEEEETTTCCEEECCSSSSSCHHHHHHHH
T ss_pred CcCCCCCCceeEecCceeEECCCCCCEEECCCcccccchhhhHHH
Confidence 469999999999999999999999999999999999998876443
No 8
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=99.70 E-value=3.3e-18 Score=110.23 Aligned_cols=45 Identities=20% Similarity=0.372 Sum_probs=41.4
Q ss_pred eeeCCCCceeeEEeEEEEEeeCCCCcEEeCcccccccccccccHH
Q 036150 8 LRRKRTKKYAVKRKAVGIWSCKYCGKVKAGALNAATLAAFTALPA 52 (77)
Q Consensus 8 ~~~~~CGK~~VKR~AVGIWkCkkCgkt~AGGAYtp~Tpag~s~~~ 52 (77)
..||+||++.|+|.++|||+|++||++||||||+|+||++...+.
T Consensus 28 y~Cp~CG~~~v~r~atGiW~C~~Cg~~~aggay~~~t~~~~~~~~ 72 (83)
T 1vq8_Z 28 HACPNCGEDRVDRQGTGIWQCSYCDYKFTGGSYKPETPGGKTVRR 72 (83)
T ss_dssp EECSSSCCEEEEEEETTEEEETTTCCEEECCSSSSSCHHHHHHHH
T ss_pred CcCCCCCCcceeccCCCeEECCCCCCEecCCEecccchHHHHHHH
Confidence 479999999999999999999999999999999999998876443
No 9
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=97.38 E-value=2.4e-05 Score=46.80 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=21.6
Q ss_pred eeeeeCCCCceeeEEeEEEEEeeCCCCcE
Q 036150 6 RVLRRKRTKKYAVKRKAVGIWSCKYCGKV 34 (77)
Q Consensus 6 ~~~~~~~CGK~~VKR~AVGIWkCkkCgkt 34 (77)
....||+||.. .++|||+|++||.+
T Consensus 13 ~k~iCpkC~a~----~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGAT----NPWGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCE----ECTTCSSCSSSSSC
T ss_pred CCccCCCCCCc----CCCCceecCCCCCc
Confidence 34568999986 99999999999987
No 10
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=95.35 E-value=0.004 Score=36.82 Aligned_cols=37 Identities=14% Similarity=0.123 Sum_probs=29.6
Q ss_pred eeeeeeeCCCCceeeEE-eEEEEEeeCCCCcEEeCccc
Q 036150 4 YYRVLRRKRTKKYAVKR-KAVGIWSCKYCGKVKAGALN 40 (77)
Q Consensus 4 ~~~~~~~~~CGK~~VKR-~AVGIWkCkkCgkt~AGGAY 40 (77)
+..++.||+||...+-. ...|.+.|..||.++.....
T Consensus 8 ll~~~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~e~~i 45 (58)
T 1dl6_A 8 ALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVI 45 (58)
T ss_dssp CCSCCSBTTBSSSCCEECSSSCCEECTTTCCEECCSCC
T ss_pred ccccccCcCCCCCceeEeCCCCeEEeCCCCCEEecccc
Confidence 45678999999966544 47899999999999987643
No 11
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=94.11 E-value=0.031 Score=32.42 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=22.6
Q ss_pred eeCCCCceeeEEeEEEEEeeCCCCcEE
Q 036150 9 RRKRTKKYAVKRKAVGIWSCKYCGKVK 35 (77)
Q Consensus 9 ~~~~CGK~~VKR~AVGIWkCkkCgkt~ 35 (77)
-||+||...+-...-..|.|.+||.+.
T Consensus 21 ~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 21 FCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp ECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred cCCCCCCceEEecCCCeEECCCCCCEE
Confidence 489999977766667899999999875
No 12
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=93.97 E-value=0.021 Score=39.00 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=25.8
Q ss_pred eeeCC--CCceeeEEeEEEEEeeCCCCcEEeCccccc
Q 036150 8 LRRKR--TKKYAVKRKAVGIWSCKYCGKVKAGALNAA 42 (77)
Q Consensus 8 ~~~~~--CGK~~VKR~AVGIWkCkkCgkt~AGGAYtp 42 (77)
-.||+ |.|. |.-..-|.|.|.+|++.+.---|..
T Consensus 44 ~aC~~~~CnKK-v~~~~~g~~~CekC~~~~~~~~~ry 79 (181)
T 1l1o_C 44 QACPTQDCNKK-VIDQQNGLYRCEKCDTEFPNFKYRM 79 (181)
T ss_dssp EBCCSTTCCCB-CEEETTTEEEETTTTEEESSCCEEE
T ss_pred CCCCchhcCCc-cccCCCCeEECCCCCCcCCCceEEE
Confidence 46899 9996 4456779999999999876544444
No 13
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=93.60 E-value=0.018 Score=32.12 Aligned_cols=32 Identities=16% Similarity=0.119 Sum_probs=24.9
Q ss_pred eeeeCCCCceeeEE-eEEEEEeeCCCCcEEeCc
Q 036150 7 VLRRKRTKKYAVKR-KAVGIWSCKYCGKVKAGA 38 (77)
Q Consensus 7 ~~~~~~CGK~~VKR-~AVGIWkCkkCgkt~AGG 38 (77)
.+.||+||...+.. ...|-+.|..||.++.-.
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~v~~e~ 37 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGYVIEEN 37 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCCBCCCC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCCccccc
Confidence 57899999855544 467999999999877543
No 14
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=93.16 E-value=0.032 Score=39.10 Aligned_cols=33 Identities=12% Similarity=0.155 Sum_probs=25.3
Q ss_pred eeeCCCCceeeEEeEEEEEeeCCCCcEEeCccccc
Q 036150 8 LRRKRTKKYAVKRKAVGIWSCKYCGKVKAGALNAA 42 (77)
Q Consensus 8 ~~~~~CGK~~VKR~AVGIWkCkkCgkt~AGGAYtp 42 (77)
.-||+|.|.-+ ...-|.|.|.+|++. .--.|..
T Consensus 43 ~ACp~CnKKV~-~~~~g~~~CekC~~~-~~~~~RY 75 (172)
T 3u50_C 43 YRCTCQGKSVL-KYHGDSFFCESCQQF-INPQVHL 75 (172)
T ss_dssp EECTTSCCCEE-EETTTEEEETTTTEE-CCCEEEE
T ss_pred hhchhhCCEee-eCCCCeEECCCCCCC-CCceEEE
Confidence 46999988655 567899999999998 5444544
No 15
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=92.26 E-value=0.095 Score=32.54 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=27.2
Q ss_pred eeeeeeCCCCceeeEEeEEEEEeeCCCCcEEeCc
Q 036150 5 YRVLRRKRTKKYAVKRKAVGIWSCKYCGKVKAGA 38 (77)
Q Consensus 5 ~~~~~~~~CGK~~VKR~AVGIWkCkkCgkt~AGG 38 (77)
|-|++|| ||...+-+...-==+|. ||+++-=.
T Consensus 2 Y~vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~ 33 (71)
T 1gh9_A 2 YIIFRCD-CGRALYSREGAKTRKCV-CGRTVNVK 33 (71)
T ss_dssp EEEEEET-TSCCEEEETTCSEEEET-TTEEEECC
T ss_pred eEEEECC-CCCEEEEcCCCcEEECC-CCCeeeec
Confidence 8999999 99999888877777897 99987543
No 16
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=91.14 E-value=0.077 Score=39.89 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=26.8
Q ss_pred eeeCC--CCceeeEEeEEEEEeeCCCCcEEeCcccccc
Q 036150 8 LRRKR--TKKYAVKRKAVGIWSCKYCGKVKAGALNAAT 43 (77)
Q Consensus 8 ~~~~~--CGK~~VKR~AVGIWkCkkCgkt~AGGAYtp~ 43 (77)
..||+ |+|. |....-|.|.|.+|++.+.-.-|...
T Consensus 309 ~aC~~~~C~kk-v~~~~~g~~~C~~C~~~~~~~~~ry~ 345 (444)
T 4gop_C 309 TACASEGCNKK-VNLDHENNWRCEKCDRSYATPEYRYI 345 (444)
T ss_dssp EECCSTTCCCB-EEECTTSCEEETTTTEEESSCEEEEC
T ss_pred ccCCcccCCCc-cccCCCccEECCCCCCcCccccEEEE
Confidence 47888 9995 55566799999999998766655553
No 17
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=90.18 E-value=0.14 Score=35.42 Aligned_cols=32 Identities=13% Similarity=0.067 Sum_probs=22.9
Q ss_pred ceeeeeeeCCCCce-eeEEeEEEEEeeCCCCcE
Q 036150 3 SYYRVLRRKRTKKY-AVKRKAVGIWSCKYCGKV 34 (77)
Q Consensus 3 ~~~~~~~~~~CGK~-~VKR~AVGIWkCkkCgkt 34 (77)
.|.|-.+||.||+. .+.----|=|+|..||..
T Consensus 10 ~~~~~~~CP~Cg~~d~~~~~~dg~~~C~~Cg~~ 42 (255)
T 1nui_A 10 VFLYHIPCDNCGSSDGNSLFSDGHTFCYVCEKW 42 (255)
T ss_dssp CEEEEECCSSSCCSSCEEEETTSCEEETTTCCE
T ss_pred ceecCCcCCCCCCCCCceEeCCCCeecccCCCc
Confidence 46788999999994 322112345999999975
No 18
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=88.35 E-value=0.17 Score=29.77 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=21.1
Q ss_pred eeeCCCCceeeEEeEEEEEeeCCCCcEE
Q 036150 8 LRRKRTKKYAVKRKAVGIWSCKYCGKVK 35 (77)
Q Consensus 8 ~~~~~CGK~~VKR~AVGIWkCkkCgkt~ 35 (77)
..||+||-.-+--.-.+.|.|.+|+++.
T Consensus 19 ~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 19 RFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp CCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred ccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 4589999865422445799999999986
No 19
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=85.66 E-value=0.44 Score=33.87 Aligned_cols=29 Identities=10% Similarity=-0.020 Sum_probs=22.9
Q ss_pred eeeCCCCceeeEEeEEEEEeeCCCCcEEe
Q 036150 8 LRRKRTKKYAVKRKAVGIWSCKYCGKVKA 36 (77)
Q Consensus 8 ~~~~~CGK~~VKR~AVGIWkCkkCgkt~A 36 (77)
-.|||||-..+=..--.=|+|.+|+.++.
T Consensus 114 ~~Cp~Cg~g~fma~h~dR~~CGkC~~t~~ 142 (189)
T 2xzm_9 114 KGCPKCGPGIFMAKHYDRHYCGKCHLTLK 142 (189)
T ss_dssp EECSTTCSSCEEEECSSCEEETTTCCCBC
T ss_pred ccCCccCCCccccCccCCCccCCceeEEE
Confidence 34889997766666667899999999973
No 20
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=85.40 E-value=0.52 Score=29.47 Aligned_cols=36 Identities=22% Similarity=0.318 Sum_probs=29.6
Q ss_pred CcceeeeeeeCCCCceee-EEeEEEEEeeCCCCcEEe
Q 036150 1 MVSYYRVLRRKRTKKYAV-KRKAVGIWSCKYCGKVKA 36 (77)
Q Consensus 1 ~~~~~~~~~~~~CGK~~V-KR~AVGIWkCkkCgkt~A 36 (77)
|-|||--.+||.|++..+ ==.|.-.=.|..|+.+.+
T Consensus 1 mnS~Fm~VKCp~C~niq~VFShA~tvV~C~~Cg~~L~ 37 (66)
T 1qxf_A 1 MHSRFVKVKCPDCEHEQVIFDHPSTIVKCIICGRTVA 37 (66)
T ss_dssp CCCCEEEEECTTTCCEEEEESSCSSCEECSSSCCEEE
T ss_pred CCceeEEEECCCCCCceEEEecCceEEEcccCCCEEe
Confidence 789999999999999974 444666678999999874
No 21
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=84.89 E-value=1.1 Score=25.45 Aligned_cols=30 Identities=10% Similarity=0.187 Sum_probs=21.8
Q ss_pred eeeeCCCCceeeEEe----------EEEEEeeCCCCcEEe
Q 036150 7 VLRRKRTKKYAVKRK----------AVGIWSCKYCGKVKA 36 (77)
Q Consensus 7 ~~~~~~CGK~~VKR~----------AVGIWkCkkCgkt~A 36 (77)
-++||+||...+.-. -+=++.|.+||.++-
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~ 54 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR 54 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEec
Confidence 467999998765421 145799999999864
No 22
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=74.90 E-value=4.5 Score=24.77 Aligned_cols=31 Identities=10% Similarity=0.131 Sum_probs=22.1
Q ss_pred eeeCCCCceeeEE----------------eEEEEEeeCCCCcEEeCc
Q 036150 8 LRRKRTKKYAVKR----------------KAVGIWSCKYCGKVKAGA 38 (77)
Q Consensus 8 ~~~~~CGK~~VKR----------------~AVGIWkCkkCgkt~AGG 38 (77)
..||.||+..+.+ ..|=.|.|..||..+-..
T Consensus 3 M~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~d~ 49 (133)
T 3o9x_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMNK 49 (133)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEECCH
T ss_pred cCCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCEeecH
Confidence 3689998763322 135689999999998654
No 23
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=73.59 E-value=1.5 Score=32.61 Aligned_cols=31 Identities=32% Similarity=0.387 Sum_probs=25.3
Q ss_pred eeeeCCCCc--e-eeEEeEEEEEeeCCCCcEEeC
Q 036150 7 VLRRKRTKK--Y-AVKRKAVGIWSCKYCGKVKAG 37 (77)
Q Consensus 7 ~~~~~~CGK--~-~VKR~AVGIWkCkkCgkt~AG 37 (77)
.+.||+||. . -|.....|--.|..||.++.-
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlVl~e 54 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLSD 54 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGTEEEETTTCBEEES
T ss_pred CCcCCCCCCCCCceeEECCCCcEEeCCCCCCccC
Confidence 468999997 3 467788999999999999874
No 24
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=71.51 E-value=5.2 Score=25.89 Aligned_cols=32 Identities=13% Similarity=0.277 Sum_probs=24.1
Q ss_pred eeeeCCCCceeeEEe----EEEEEeeCCCCcEEeCc
Q 036150 7 VLRRKRTKKYAVKRK----AVGIWSCKYCGKVKAGA 38 (77)
Q Consensus 7 ~~~~~~CGK~~VKR~----AVGIWkCkkCgkt~AGG 38 (77)
+.-||.||-.=.-+. ..++|.|+.|++..--.
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAG 39 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEECS
T ss_pred CCcccccCccCcccccCcCCCCEEECCcCCCeeecC
Confidence 456999998854443 47899999999987543
No 25
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=70.86 E-value=7.4 Score=22.91 Aligned_cols=30 Identities=10% Similarity=0.140 Sum_probs=21.2
Q ss_pred eeeCCCCceeeEE----------------eEEEEEeeCCCCcEEeC
Q 036150 8 LRRKRTKKYAVKR----------------KAVGIWSCKYCGKVKAG 37 (77)
Q Consensus 8 ~~~~~CGK~~VKR----------------~AVGIWkCkkCgkt~AG 37 (77)
.+||.||...+.+ ..|=-|.|..||..+..
T Consensus 3 m~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE~~~~ 48 (78)
T 3ga8_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMN 48 (78)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEECC
T ss_pred eECCCCCCCeeEeEEEEEEEEECCEEEEEcCceeEECCCCCCEEEC
Confidence 4688888653332 24557999999999865
No 26
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=70.54 E-value=2.2 Score=18.42 Aligned_cols=11 Identities=27% Similarity=0.797 Sum_probs=9.3
Q ss_pred EeeCCCCcEEe
Q 036150 26 WSCKYCGKVKA 36 (77)
Q Consensus 26 WkCkkCgkt~A 36 (77)
+.|..|++.|.
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvh_A 4 FSCSLCPQRSR 14 (27)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCcChhhC
Confidence 68999999875
No 27
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=69.87 E-value=1.5 Score=29.43 Aligned_cols=26 Identities=12% Similarity=0.040 Sum_probs=19.3
Q ss_pred eCC--CCceeeEEeEEEEEeeCCCCcEE
Q 036150 10 RKR--TKKYAVKRKAVGIWSCKYCGKVK 35 (77)
Q Consensus 10 ~~~--CGK~~VKR~AVGIWkCkkCgkt~ 35 (77)
||+ ||.-.+=-.--.-|.|.+|+.++
T Consensus 121 c~~~~cg~g~fma~h~~r~~cgkc~~t~ 148 (152)
T 3u5c_f 121 CSNPTCGAGVFLANHKDRLYCGKCHSVY 148 (152)
T ss_dssp CCSTTSCSSSBEEECSSCEEESSSSSCC
T ss_pred CCCccCCCceEecccCCCcccCCCceEE
Confidence 677 98865544444679999999875
No 28
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=69.85 E-value=3.6 Score=28.13 Aligned_cols=20 Identities=35% Similarity=0.900 Sum_probs=16.7
Q ss_pred eEEeEEEEEeeCCCCcEEeC
Q 036150 18 VKRKAVGIWSCKYCGKVKAG 37 (77)
Q Consensus 18 VKR~AVGIWkCkkCgkt~AG 37 (77)
++|....+|.|..||++.-|
T Consensus 148 ~~~~~~~~~~C~~CG~~~~g 167 (191)
T 1lko_A 148 FLREQATKWRCRNCGYVHEG 167 (191)
T ss_dssp SEEEEEEEEEETTTCCEEEE
T ss_pred cccCCCceEEECCCCCEeeC
Confidence 46666779999999999885
No 29
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=67.61 E-value=1.8 Score=31.89 Aligned_cols=32 Identities=34% Similarity=0.463 Sum_probs=25.6
Q ss_pred eeeeeCCCCce---eeEEeEEEEEeeCCCCcEEeC
Q 036150 6 RVLRRKRTKKY---AVKRKAVGIWSCKYCGKVKAG 37 (77)
Q Consensus 6 ~~~~~~~CGK~---~VKR~AVGIWkCkkCgkt~AG 37 (77)
..++||.||+. -|.....|-.-|..||.++.-
T Consensus 20 ~~~~CPECGs~~t~IV~D~erGE~VCsdCGLVLEE 54 (197)
T 3k1f_M 20 IVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSD 54 (197)
T ss_dssp CCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCCC
T ss_pred cCeECcCCCCcCCeEEEeCCCCEEEEcCCCCCcCC
Confidence 34689999983 466678899999999998853
No 30
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=67.27 E-value=0.7 Score=33.97 Aligned_cols=30 Identities=37% Similarity=0.520 Sum_probs=25.1
Q ss_pred eeeeCCCCce---eeEEeEEEEEeeCCCCcEEe
Q 036150 7 VLRRKRTKKY---AVKRKAVGIWSCKYCGKVKA 36 (77)
Q Consensus 7 ~~~~~~CGK~---~VKR~AVGIWkCkkCgkt~A 36 (77)
...||+||.. -|.....|-.-|..||.++-
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCC
T ss_pred CCcCcCCCCCCCceEEECCCCCEecCCCCeEcc
Confidence 4579999995 46677899999999999875
No 31
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=64.57 E-value=2.8 Score=17.85 Aligned_cols=12 Identities=33% Similarity=0.706 Sum_probs=9.4
Q ss_pred EEeeCCCCcEEe
Q 036150 25 IWSCKYCGKVKA 36 (77)
Q Consensus 25 IWkCkkCgkt~A 36 (77)
-+.|..|++.|.
T Consensus 2 ~~~C~~C~k~f~ 13 (29)
T 2m0f_A 2 PLKCRECGKQFT 13 (29)
T ss_dssp CEECTTTSCEES
T ss_pred CccCCCCCCccC
Confidence 367999998875
No 32
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=62.99 E-value=0.82 Score=28.08 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=17.7
Q ss_pred eeeCCCCceeeEEeEEEEEeeCCCCcEE
Q 036150 8 LRRKRTKKYAVKRKAVGIWSCKYCGKVK 35 (77)
Q Consensus 8 ~~~~~CGK~~VKR~AVGIWkCkkCgkt~ 35 (77)
..|++||+.--....-.| +|+.||..+
T Consensus 29 Y~C~~CG~~~e~~~~d~i-rCp~CG~RI 55 (70)
T 1twf_L 29 YICAECSSKLSLSRTDAV-RCKDCGHRI 55 (70)
T ss_dssp EECSSSCCEECCCTTSTT-CCSSSCCCC
T ss_pred EECCCCCCcceeCCCCCc-cCCCCCceE
Confidence 368999988422233344 899998743
No 33
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=62.58 E-value=3.5 Score=27.27 Aligned_cols=18 Identities=11% Similarity=0.272 Sum_probs=15.4
Q ss_pred EEEEEeeCCCCcEEeCcc
Q 036150 22 AVGIWSCKYCGKVKAGAL 39 (77)
Q Consensus 22 AVGIWkCkkCgkt~AGGA 39 (77)
--+.|+|+.||+.+.+..
T Consensus 67 ~p~~~~C~~CG~~~~~~~ 84 (139)
T 3a43_A 67 EEAVFKCRNCNYEWKLKE 84 (139)
T ss_dssp ECCEEEETTTCCEEEGGG
T ss_pred cCCcEECCCCCCEEeccc
Confidence 347899999999998866
No 34
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=61.92 E-value=2.7 Score=26.51 Aligned_cols=17 Identities=18% Similarity=0.104 Sum_probs=14.9
Q ss_pred eeCCCCceeeEEeEEEE
Q 036150 9 RRKRTKKYAVKRKAVGI 25 (77)
Q Consensus 9 ~~~~CGK~~VKR~AVGI 25 (77)
-||+||...++|+++-+
T Consensus 32 FCp~CGn~TL~Rvsvsv 48 (79)
T 2con_A 32 FCGHCGNKTLKKVSVTI 48 (79)
T ss_dssp SCSSSCCSCCEEEECBC
T ss_pred cccccCcccceEEEEEE
Confidence 48999999999999865
No 35
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=61.84 E-value=4.3 Score=17.65 Aligned_cols=11 Identities=18% Similarity=0.579 Sum_probs=8.8
Q ss_pred EeeCCCCcEEe
Q 036150 26 WSCKYCGKVKA 36 (77)
Q Consensus 26 WkCkkCgkt~A 36 (77)
.+|..|++.|.
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvg_A 4 YRCPLCRAGCP 14 (27)
T ss_dssp EEETTTTEEES
T ss_pred cCCCCCCcccC
Confidence 57889998875
No 36
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=61.51 E-value=4.4 Score=17.35 Aligned_cols=11 Identities=45% Similarity=1.026 Sum_probs=9.0
Q ss_pred EeeCCCCcEEe
Q 036150 26 WSCKYCGKVKA 36 (77)
Q Consensus 26 WkCkkCgkt~A 36 (77)
.+|..|++.|.
T Consensus 4 ~~C~~C~k~f~ 14 (28)
T 2kvf_A 4 YSCSVCGKRFS 14 (28)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCCCcccC
Confidence 57999999875
No 37
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=60.72 E-value=4.6 Score=17.13 Aligned_cols=11 Identities=36% Similarity=1.262 Sum_probs=8.8
Q ss_pred EeeCCCCcEEe
Q 036150 26 WSCKYCGKVKA 36 (77)
Q Consensus 26 WkCkkCgkt~A 36 (77)
+.|..|++.|.
T Consensus 4 ~~C~~C~~~f~ 14 (30)
T 2m0d_A 4 YQCDYCGRSFS 14 (30)
T ss_dssp EECTTTCCEES
T ss_pred ccCCCCCcccC
Confidence 57888998875
No 38
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=58.92 E-value=6.5 Score=21.29 Aligned_cols=40 Identities=15% Similarity=0.151 Sum_probs=27.2
Q ss_pred ceeeee---eeCCCCceee-----EEeEEEEEe-----eCCCCcEEeCccccc
Q 036150 3 SYYRVL---RRKRTKKYAV-----KRKAVGIWS-----CKYCGKVKAGALNAA 42 (77)
Q Consensus 3 ~~~~~~---~~~~CGK~~V-----KR~AVGIWk-----CkkCgkt~AGGAYtp 42 (77)
.|||.+ +|..|++.-. -+..-.+|| |..|++.+.++.|..
T Consensus 4 ~yy~~~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~ 56 (72)
T 3f6q_B 4 LYFQGSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYE 56 (72)
T ss_dssp EECCCCTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEE
T ss_pred ccccCcCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEe
Confidence 367744 6788888632 233446787 888999998887653
No 39
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=58.92 E-value=4.8 Score=18.04 Aligned_cols=12 Identities=25% Similarity=0.556 Sum_probs=9.7
Q ss_pred EeeCCCCcEEeC
Q 036150 26 WSCKYCGKVKAG 37 (77)
Q Consensus 26 WkCkkCgkt~AG 37 (77)
+.|..|++.|.-
T Consensus 8 ~~C~~C~k~f~~ 19 (35)
T 2elx_A 8 YVCALCLKKFVS 19 (35)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCcchhCC
Confidence 689999998753
No 40
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=57.98 E-value=6 Score=24.31 Aligned_cols=34 Identities=12% Similarity=0.164 Sum_probs=26.8
Q ss_pred ceeeeeeeCCCCceee-EEeEEEEEeeCCCCcEEe
Q 036150 3 SYYRVLRRKRTKKYAV-KRKAVGIWSCKYCGKVKA 36 (77)
Q Consensus 3 ~~~~~~~~~~CGK~~V-KR~AVGIWkCkkCgkt~A 36 (77)
|||--.+||+|++..+ ==.+.-.=.|..|+.+.+
T Consensus 11 S~Fm~VkCp~C~~~q~VFSha~t~V~C~~Cgt~L~ 45 (63)
T 3j20_W 11 SRFLRVKCIDCGNEQIVFSHPATKVRCLICGATLV 45 (63)
T ss_dssp CCEEEEECSSSCCEEEEESSCSSCEECSSSCCEEE
T ss_pred CcEEEEECCCCCCeeEEEecCCeEEEccCcCCEEe
Confidence 6788889999999974 334556668999999875
No 41
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=57.38 E-value=3.3 Score=26.49 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=23.2
Q ss_pred eeeCCCCceeeEEeE----EEEEeeCCCCcEEeCc
Q 036150 8 LRRKRTKKYAVKRKA----VGIWSCKYCGKVKAGA 38 (77)
Q Consensus 8 ~~~~~CGK~~VKR~A----VGIWkCkkCgkt~AGG 38 (77)
.-||+||..=.-+.. .-+|.|+.|++..--.
T Consensus 5 ~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (113)
T 3h0g_I 5 QYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAA 39 (113)
T ss_dssp CCCSSSCCCCEECCCTTTCCCCEECSSSCCEECCS
T ss_pred eeCcCCCCEeeEcccCCCCeeEEECCCCCCeEEcC
Confidence 458999998654443 3389999999988654
No 42
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=56.79 E-value=6.4 Score=24.86 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=16.2
Q ss_pred EeEEEEEeeCCCCcEEeCccc
Q 036150 20 RKAVGIWSCKYCGKVKAGALN 40 (77)
Q Consensus 20 R~AVGIWkCkkCgkt~AGGAY 40 (77)
+.--+.|+|..||+.+-...+
T Consensus 68 ~~~p~~~~C~~CG~~~e~~~~ 88 (119)
T 2kdx_A 68 VDEKVELECKDCSHVFKPNAL 88 (119)
T ss_dssp EEECCEEECSSSSCEECSCCS
T ss_pred EeccceEEcCCCCCEEeCCCC
Confidence 345578999999999887544
No 43
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=56.07 E-value=6.1 Score=23.87 Aligned_cols=32 Identities=19% Similarity=0.017 Sum_probs=22.1
Q ss_pred eeeeeeeCCCCceeeEEeEEEEEeeCCCCcEE
Q 036150 4 YYRVLRRKRTKKYAVKRKAVGIWSCKYCGKVK 35 (77)
Q Consensus 4 ~~~~~~~~~CGK~~VKR~AVGIWkCkkCgkt~ 35 (77)
...+|.||.|+..=.--..-|-=.|+.|+..+
T Consensus 5 LL~iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 5 FLEILVCPLCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp CEEECBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred HhhheECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 35789999999763322234666799998754
No 44
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=56.01 E-value=6 Score=17.88 Aligned_cols=13 Identities=15% Similarity=0.437 Sum_probs=10.2
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 7 ~~~C~~C~k~f~~ 19 (35)
T 1srk_A 7 PFVCRICLSAFTT 19 (35)
T ss_dssp CEECSSSCCEESS
T ss_pred CeeCCCCCcccCC
Confidence 3789999998853
No 45
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.78 E-value=6.3 Score=18.44 Aligned_cols=13 Identities=15% Similarity=0.516 Sum_probs=10.3
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-.+|..|++.|.-
T Consensus 9 ~~~C~~C~k~f~~ 21 (37)
T 2elm_A 9 LYYCSQCHYSSIT 21 (37)
T ss_dssp EEECSSSSCEEEC
T ss_pred CeECCCCCcccCC
Confidence 3789999998853
No 46
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=55.35 E-value=5 Score=30.52 Aligned_cols=34 Identities=12% Similarity=0.148 Sum_probs=25.8
Q ss_pred eeeCCCCceeeEEe----EEEEEeeCCCCc-------------EEeCcccc
Q 036150 8 LRRKRTKKYAVKRK----AVGIWSCKYCGK-------------VKAGALNA 41 (77)
Q Consensus 8 ~~~~~CGK~~VKR~----AVGIWkCkkCgk-------------t~AGGAYt 41 (77)
.-|||||...+..- -|.=..|..|+. ++++|||.
T Consensus 35 ~yCPnCG~~~l~~f~nN~PVaDF~C~~C~EeyELKSk~~~~~~~I~dGAY~ 85 (257)
T 4esj_A 35 SYCPNCGNNPLNHFENNRPVADFYCNHCSEEFELKSKKGNFSSTINDGAYA 85 (257)
T ss_dssp CCCTTTCCSSCEEC----CCCEEECTTTCCEEEEEEEESSCCSEEEEEEHH
T ss_pred CcCCCCCChhhhhccCCCcccccccCCcchhheeccccCccCccccCchHH
Confidence 45999999877543 456788999964 78889885
No 47
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=54.72 E-value=6.5 Score=25.27 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=17.8
Q ss_pred eeCCCCceeeEEeEE----EEEeeCCCCc
Q 036150 9 RRKRTKKYAVKRKAV----GIWSCKYCGK 33 (77)
Q Consensus 9 ~~~~CGK~~VKR~AV----GIWkCkkCgk 33 (77)
-||+||+.-..|..- -.+.|..|+.
T Consensus 5 ~C~~CG~~~~~~~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 5 FCSQCGGEVILRIPEGDTLPRYICPKCHT 33 (189)
T ss_dssp BCTTTCCBCEEECCTTCSSCEEEETTTTE
T ss_pred cCchhCCccccccccCCCCcceECCCCCC
Confidence 589999987666432 2567999983
No 48
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.62 E-value=6.4 Score=17.98 Aligned_cols=13 Identities=46% Similarity=1.004 Sum_probs=10.3
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
.+.|..|++.|.-
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2els_A 9 IFTCEYCNKVFKF 21 (36)
T ss_dssp CEECTTTCCEESS
T ss_pred CEECCCCCceeCC
Confidence 4789999998853
No 49
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=59.37 E-value=2.6 Score=17.97 Aligned_cols=12 Identities=33% Similarity=0.808 Sum_probs=8.8
Q ss_pred EeeCCCCcEEeC
Q 036150 26 WSCKYCGKVKAG 37 (77)
Q Consensus 26 WkCkkCgkt~AG 37 (77)
..|..|++.|.-
T Consensus 3 ~~C~~C~k~f~~ 14 (26)
T 2lvu_A 3 YVCERCGKRFVQ 14 (26)
Confidence 568888887753
No 50
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=52.54 E-value=3.4 Score=17.51 Aligned_cols=11 Identities=18% Similarity=0.721 Sum_probs=8.2
Q ss_pred EeeCCCCcEEe
Q 036150 26 WSCKYCGKVKA 36 (77)
Q Consensus 26 WkCkkCgkt~A 36 (77)
.+|..|++.|.
T Consensus 2 ~~C~~C~k~f~ 12 (27)
T 1znf_A 2 YKCGLCERSFV 12 (27)
T ss_dssp CBCSSSCCBCS
T ss_pred ccCCCCCCcCC
Confidence 46888888765
No 51
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=52.46 E-value=6.5 Score=23.85 Aligned_cols=31 Identities=13% Similarity=-0.049 Sum_probs=21.5
Q ss_pred eeeeeeCCCCceeeEEeEEEEEeeCCCCcEE
Q 036150 5 YRVLRRKRTKKYAVKRKAVGIWSCKYCGKVK 35 (77)
Q Consensus 5 ~~~~~~~~CGK~~VKR~AVGIWkCkkCgkt~ 35 (77)
..+|.||.|+..=.--..-|-=.|+.|+..+
T Consensus 6 L~iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 6 LDILVCPVCKGRLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CCCCBCTTTCCBEEEETTTTEEEETTTTEEE
T ss_pred hhheECCCCCCcCEEeCCCCEEEcCCCCcee
Confidence 4679999999863323334666799998754
No 52
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.22 E-value=7 Score=18.47 Aligned_cols=13 Identities=23% Similarity=0.613 Sum_probs=10.4
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 11 ~~~C~~C~k~f~~ 23 (42)
T 2en2_A 11 PYKCETCGARFVQ 23 (42)
T ss_dssp SEECTTTCCEESS
T ss_pred CEeCCCcChhhCC
Confidence 4789999998853
No 53
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=52.21 E-value=7.2 Score=16.55 Aligned_cols=11 Identities=27% Similarity=0.606 Sum_probs=8.5
Q ss_pred EeeCCCCcEEe
Q 036150 26 WSCKYCGKVKA 36 (77)
Q Consensus 26 WkCkkCgkt~A 36 (77)
..|..|++.|.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 1rik_A 3 FACPECPKRFM 13 (29)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCCCchhC
Confidence 46888888875
No 54
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=52.06 E-value=17 Score=28.46 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=24.3
Q ss_pred eeCCCCceeeEEeE-EEE----------EeeCCCCcEE----eCccccc
Q 036150 9 RRKRTKKYAVKRKA-VGI----------WSCKYCGKVK----AGALNAA 42 (77)
Q Consensus 9 ~~~~CGK~~VKR~A-VGI----------WkCkkCgkt~----AGGAYtp 42 (77)
.|||||+..+.|.- +-| +.|.+||++. .+|...|
T Consensus 14 ~Cp~C~~~g~t~~~~~~IP~F~eVii~Sf~C~~CGyrn~ev~~~g~~~p 62 (404)
T 2qkd_A 14 LCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQD 62 (404)
T ss_dssp ECTTTSSEEEEEEEEEEETTTEEEEEEEEECTTTCCEEEEEEEEESSCS
T ss_pred cCCCCCCCceEEEEEEcCCCCceEEEEEEECCCCCCchheeeECcccCC
Confidence 59999988766653 333 8999999864 4555554
No 55
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=51.99 E-value=6.2 Score=23.83 Aligned_cols=31 Identities=10% Similarity=-0.143 Sum_probs=21.3
Q ss_pred eeeeeeCCCCceeeEEeEEEEEeeCCCCcEE
Q 036150 5 YRVLRRKRTKKYAVKRKAVGIWSCKYCGKVK 35 (77)
Q Consensus 5 ~~~~~~~~CGK~~VKR~AVGIWkCkkCgkt~ 35 (77)
..+|.||.|+..=.--..-|-=.|+.|+..+
T Consensus 6 L~iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 6 LDILVCPVTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp SCCCBCSSSCCBCEEETTTTEEEETTTTEEE
T ss_pred hhheECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 4678999999763322233666799998754
No 56
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=51.57 E-value=12 Score=21.17 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=20.2
Q ss_pred eeeeCCCCceeeE------E----eEEEEEeeCCCCcEE
Q 036150 7 VLRRKRTKKYAVK------R----KAVGIWSCKYCGKVK 35 (77)
Q Consensus 7 ~~~~~~CGK~~VK------R----~AVGIWkCkkCgkt~ 35 (77)
...||+||..... | --+=+..|.+||+.+
T Consensus 9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w 47 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 47 (50)
T ss_dssp CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred ccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeE
Confidence 3578999987653 1 124578999999875
No 57
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.34 E-value=7.5 Score=17.82 Aligned_cols=13 Identities=23% Similarity=0.490 Sum_probs=10.3
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-++|..|++.|.-
T Consensus 9 ~~~C~~C~k~f~~ 21 (37)
T 2elp_A 9 AMKCPYCDFYFMK 21 (37)
T ss_dssp CEECSSSSCEECS
T ss_pred CeECCCCChhhcc
Confidence 3789999998863
No 58
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=51.34 E-value=3.2 Score=17.53 Aligned_cols=11 Identities=27% Similarity=0.531 Sum_probs=8.2
Q ss_pred EeeCCCCcEEe
Q 036150 26 WSCKYCGKVKA 36 (77)
Q Consensus 26 WkCkkCgkt~A 36 (77)
+.|..|++.|.
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 2m0e_A 3 HKCPHCDKKFN 13 (29)
T ss_dssp CCCSSCCCCCC
T ss_pred CcCCCCCcccC
Confidence 56888888764
No 59
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=51.26 E-value=22 Score=22.38 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=24.5
Q ss_pred eeeeeCCCCce---eeEE---eEEEEEeeCCCCcEEeC
Q 036150 6 RVLRRKRTKKY---AVKR---KAVGIWSCKYCGKVKAG 37 (77)
Q Consensus 6 ~~~~~~~CGK~---~VKR---~AVGIWkCkkCgkt~AG 37 (77)
.+..||.|+.. .|+. ..+|+=+|+.|+..+-=
T Consensus 22 t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 22 TQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQT 59 (85)
T ss_dssp SCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEE
T ss_pred CeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEe
Confidence 45689999998 2443 26999999999988743
No 60
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.24 E-value=7.4 Score=17.75 Aligned_cols=12 Identities=17% Similarity=0.581 Sum_probs=9.8
Q ss_pred EEeeCCCCcEEe
Q 036150 25 IWSCKYCGKVKA 36 (77)
Q Consensus 25 IWkCkkCgkt~A 36 (77)
.++|..|++.|.
T Consensus 9 ~~~C~~C~k~f~ 20 (36)
T 2elq_A 9 PFKCSLCEYATR 20 (36)
T ss_dssp SEECSSSSCEES
T ss_pred CccCCCCCchhC
Confidence 378999999885
No 61
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.16 E-value=8.6 Score=17.32 Aligned_cols=13 Identities=23% Similarity=0.480 Sum_probs=10.1
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-..|..|++.|.-
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elt_A 9 PYKCPQCSYASAI 21 (36)
T ss_dssp SEECSSSSCEESS
T ss_pred CCCCCCCCcccCC
Confidence 3689999998753
No 62
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.80 E-value=5.6 Score=18.20 Aligned_cols=12 Identities=33% Similarity=0.722 Sum_probs=9.6
Q ss_pred EeeCCCCcEEeC
Q 036150 26 WSCKYCGKVKAG 37 (77)
Q Consensus 26 WkCkkCgkt~AG 37 (77)
+.|..|++.|.-
T Consensus 10 ~~C~~C~k~f~~ 21 (37)
T 2elo_A 10 YSCPVCEKSFSE 21 (37)
T ss_dssp CEETTTTEECSS
T ss_pred cCCCCCCCccCC
Confidence 689999998753
No 63
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=48.45 E-value=4.2 Score=17.30 Aligned_cols=11 Identities=27% Similarity=0.803 Sum_probs=8.1
Q ss_pred EeeCCCCcEEe
Q 036150 26 WSCKYCGKVKA 36 (77)
Q Consensus 26 WkCkkCgkt~A 36 (77)
+.|..|++.|.
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 1ard_A 3 FVCEVCTRAFA 13 (29)
T ss_dssp CBCTTTCCBCS
T ss_pred eECCCCCcccC
Confidence 46888888765
No 64
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=48.30 E-value=9.1 Score=17.93 Aligned_cols=13 Identities=31% Similarity=0.634 Sum_probs=10.3
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 11 ~~~C~~C~k~f~~ 23 (42)
T 2epc_A 11 PYLCGQCGKSFTQ 23 (42)
T ss_dssp CEECSSSCCEESS
T ss_pred CeECCCCCcccCC
Confidence 3789999998853
No 65
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=48.22 E-value=9.2 Score=26.54 Aligned_cols=15 Identities=27% Similarity=0.671 Sum_probs=12.8
Q ss_pred EEEEeeCCCCcEEeC
Q 036150 23 VGIWSCKYCGKVKAG 37 (77)
Q Consensus 23 VGIWkCkkCgkt~AG 37 (77)
..+|.|..||++.-|
T Consensus 169 ~~~~~C~~CG~i~~g 183 (202)
T 1yuz_A 169 DKFHLCPICGYIHKG 183 (202)
T ss_dssp CCEEECSSSCCEEES
T ss_pred CcEEEECCCCCEEcC
Confidence 358999999999886
No 66
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.59 E-value=9.4 Score=18.49 Aligned_cols=13 Identities=38% Similarity=0.736 Sum_probs=10.5
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eoz_A 12 PYSCNVCGKAFVL 24 (46)
T ss_dssp SEEETTTTEEESS
T ss_pred CeECcccChhhCC
Confidence 3789999998863
No 67
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.08 E-value=4.5 Score=18.35 Aligned_cols=12 Identities=33% Similarity=0.672 Sum_probs=9.3
Q ss_pred EEeeCCCCcEEe
Q 036150 25 IWSCKYCGKVKA 36 (77)
Q Consensus 25 IWkCkkCgkt~A 36 (77)
-+.|..|++.|.
T Consensus 9 ~~~C~~C~k~f~ 20 (36)
T 2elr_A 9 THLCDMCGKKFK 20 (36)
T ss_dssp SCBCTTTCCBCS
T ss_pred CeecCcCCCCcC
Confidence 368999998775
No 68
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=46.98 E-value=5.8 Score=23.94 Aligned_cols=24 Identities=25% Similarity=0.570 Sum_probs=18.1
Q ss_pred eeeeeeCCCCceeeEEeEEEEEeeCCCCcE
Q 036150 5 YRVLRRKRTKKYAVKRKAVGIWSCKYCGKV 34 (77)
Q Consensus 5 ~~~~~~~~CGK~~VKR~AVGIWkCkkCgkt 34 (77)
+++-+|++||...+|-+ |..||..
T Consensus 4 s~mr~C~~CgvYTLk~~------CP~CG~~ 27 (60)
T 2apo_B 4 MRMKKCPKCGLYTLKEI------CPKCGEK 27 (60)
T ss_dssp CCCEECTTTCCEESSSB------CSSSCSB
T ss_pred hhceeCCCCCCEecccc------CcCCCCc
Confidence 36678999999998433 8888864
No 69
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.72 E-value=9.5 Score=18.48 Aligned_cols=13 Identities=38% Similarity=0.782 Sum_probs=10.5
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-++|..|++.|.-
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2ytp_A 12 HYECSECGKAFAR 24 (46)
T ss_dssp CEECSSSCCEESS
T ss_pred CeECCcCCcccCC
Confidence 3789999998863
No 70
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.62 E-value=9.7 Score=17.90 Aligned_cols=13 Identities=31% Similarity=0.848 Sum_probs=10.4
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 10 ~~~C~~C~k~f~~ 22 (41)
T 2ept_A 10 VYECQECGKSFRQ 22 (41)
T ss_dssp CEECSSSCCEESS
T ss_pred CeECCCCCCCcCC
Confidence 4789999998853
No 71
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=46.36 E-value=4 Score=17.32 Aligned_cols=11 Identities=36% Similarity=0.999 Sum_probs=8.1
Q ss_pred EeeCCCCcEEe
Q 036150 26 WSCKYCGKVKA 36 (77)
Q Consensus 26 WkCkkCgkt~A 36 (77)
+.|..|++.|.
T Consensus 3 ~~C~~C~k~f~ 13 (30)
T 1klr_A 3 YQCQYCEFRSA 13 (30)
T ss_dssp CCCSSSSCCCS
T ss_pred ccCCCCCCccC
Confidence 46888888765
No 72
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.03 E-value=9.9 Score=18.33 Aligned_cols=13 Identities=31% Similarity=0.751 Sum_probs=10.5
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2emy_A 12 PYECHECGKAFSR 24 (46)
T ss_dssp CEECSSSCCEESS
T ss_pred CcCCCCCCcccCc
Confidence 3789999998863
No 73
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.98 E-value=11 Score=17.15 Aligned_cols=12 Identities=17% Similarity=0.744 Sum_probs=9.6
Q ss_pred EEeeCCCCcEEe
Q 036150 25 IWSCKYCGKVKA 36 (77)
Q Consensus 25 IWkCkkCgkt~A 36 (77)
-..|..|++.|.
T Consensus 9 ~~~C~~C~k~f~ 20 (36)
T 2elv_A 9 LYDCHICERKFK 20 (36)
T ss_dssp CEECSSSCCEES
T ss_pred CeECCCCCCccC
Confidence 368999999875
No 74
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.77 E-value=10 Score=18.22 Aligned_cols=13 Identities=31% Similarity=0.629 Sum_probs=10.6
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2yts_A 12 PYICNECGKSFIQ 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CEECCCCChhhCC
Confidence 3789999998864
No 75
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=45.67 E-value=10 Score=17.83 Aligned_cols=13 Identities=31% Similarity=0.703 Sum_probs=10.3
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 10 ~~~C~~C~k~f~~ 22 (42)
T 2el5_A 10 PYECSECGKAFNR 22 (42)
T ss_dssp SEECSSSCCEESS
T ss_pred CccCCCcChhhCC
Confidence 3789999998853
No 76
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=45.56 E-value=9.6 Score=21.63 Aligned_cols=13 Identities=23% Similarity=0.588 Sum_probs=11.0
Q ss_pred EEEeeCCCCcEEe
Q 036150 24 GIWSCKYCGKVKA 36 (77)
Q Consensus 24 GIWkCkkCgkt~A 36 (77)
.+|+|..||++.-
T Consensus 3 ~~y~C~vCGyvyd 15 (46)
T 6rxn_A 3 QKYVCNVCGYEYD 15 (46)
T ss_dssp CCEEETTTCCEEC
T ss_pred CEEECCCCCeEEe
Confidence 3799999998875
No 77
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.50 E-value=10 Score=18.19 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=10.5
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2ytf_A 12 PFECSECQKAFNT 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CcCCCCCCcccCC
Confidence 3789999998864
No 78
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.50 E-value=10 Score=18.19 Aligned_cols=13 Identities=38% Similarity=0.731 Sum_probs=10.6
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2yrj_A 12 PYRCGECGKAFAQ 24 (46)
T ss_dssp CEECSSSCCEESS
T ss_pred CeECCCCCCccCC
Confidence 4789999998864
No 79
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=45.45 E-value=6.3 Score=23.86 Aligned_cols=31 Identities=13% Similarity=-0.127 Sum_probs=21.1
Q ss_pred eeeeeeCCCCceeeEEeEEEEEeeCCCCcEE
Q 036150 5 YRVLRRKRTKKYAVKRKAVGIWSCKYCGKVK 35 (77)
Q Consensus 5 ~~~~~~~~CGK~~VKR~AVGIWkCkkCgkt~ 35 (77)
..+|.||.|+..=.--..-|-=.|+.|+..+
T Consensus 6 LeiL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 6 LDILACPICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp GGTCCCTTTCCCCEECTTSSEEEETTTTEEE
T ss_pred HhheeCCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 4578999999763322234566799998765
No 80
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.92 E-value=11 Score=18.09 Aligned_cols=13 Identities=31% Similarity=0.705 Sum_probs=10.4
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-++|..|++.|.-
T Consensus 12 ~~~C~~C~k~F~~ 24 (45)
T 2epu_A 12 PFECTHCGKSFRA 24 (45)
T ss_dssp SEEETTTTEEESS
T ss_pred CccCCCCCCccCC
Confidence 3789999998853
No 81
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.73 E-value=12 Score=17.89 Aligned_cols=13 Identities=31% Similarity=0.782 Sum_probs=10.5
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~F~~ 24 (44)
T 2eox_A 12 SYNCNECGKAFTR 24 (44)
T ss_dssp CEEETTTTEEESS
T ss_pred CeECcccCcccCC
Confidence 4789999998853
No 82
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.73 E-value=11 Score=17.86 Aligned_cols=13 Identities=23% Similarity=0.524 Sum_probs=10.4
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (44)
T 2eof_A 12 PYECNECQKAFNT 24 (44)
T ss_dssp SEECTTTCCEESC
T ss_pred CeECCCCCcccCC
Confidence 4789999998853
No 83
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.37 E-value=11 Score=18.17 Aligned_cols=13 Identities=31% Similarity=0.731 Sum_probs=10.5
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2ep3_A 12 PYRCAECGKAFTD 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCCCCchhCC
Confidence 3789999998864
No 84
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=44.28 E-value=5.5 Score=18.24 Aligned_cols=11 Identities=18% Similarity=0.697 Sum_probs=8.8
Q ss_pred EeeCCCCcEEe
Q 036150 26 WSCKYCGKVKA 36 (77)
Q Consensus 26 WkCkkCgkt~A 36 (77)
++|..|++.|.
T Consensus 12 ~~C~~C~k~f~ 22 (37)
T 1p7a_A 12 FQCPDCDRSFS 22 (37)
T ss_dssp BCCTTTCCCBS
T ss_pred ccCCCCCcccC
Confidence 67999998774
No 85
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.13 E-value=11 Score=18.15 Aligned_cols=12 Identities=33% Similarity=0.772 Sum_probs=10.0
Q ss_pred EEeeCCCCcEEe
Q 036150 25 IWSCKYCGKVKA 36 (77)
Q Consensus 25 IWkCkkCgkt~A 36 (77)
-+.|..|++.|.
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2em3_A 12 PYECKVCSKAFT 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCCCCcccC
Confidence 378999999885
No 86
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.45 E-value=12 Score=17.99 Aligned_cols=13 Identities=31% Similarity=0.749 Sum_probs=10.4
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eow_A 12 PYKCNECGKAFRA 24 (46)
T ss_dssp CEECTTSCCEESS
T ss_pred CeeccccCChhcC
Confidence 3789999998863
No 87
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=43.33 E-value=12 Score=17.43 Aligned_cols=12 Identities=17% Similarity=0.833 Sum_probs=9.5
Q ss_pred EeeCCCCcEEeC
Q 036150 26 WSCKYCGKVKAG 37 (77)
Q Consensus 26 WkCkkCgkt~AG 37 (77)
..|..|++.|.-
T Consensus 7 ~~C~~C~k~f~~ 18 (39)
T 1njq_A 7 YTCSFCKREFRS 18 (39)
T ss_dssp EECTTTCCEESS
T ss_pred eECCCCCcccCC
Confidence 579999998753
No 88
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=43.25 E-value=13 Score=15.53 Aligned_cols=12 Identities=25% Similarity=0.836 Sum_probs=9.1
Q ss_pred EeeC--CCCcEEeC
Q 036150 26 WSCK--YCGKVKAG 37 (77)
Q Consensus 26 WkCk--kCgkt~AG 37 (77)
+.|. .|++.|.-
T Consensus 3 ~~C~~~~C~k~f~~ 16 (29)
T 2ab3_A 3 YVCHFENCGRSFND 16 (29)
T ss_dssp EEECSTTTCEEESS
T ss_pred CCCcCCcCcCccCC
Confidence 5788 89988753
No 89
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.11 E-value=12 Score=18.14 Aligned_cols=13 Identities=31% Similarity=0.723 Sum_probs=10.4
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2emf_A 12 HFECTECGKAFTR 24 (46)
T ss_dssp CEECSSSCCEESC
T ss_pred CeECCCCCchhCC
Confidence 3789999998853
No 90
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.01 E-value=12 Score=17.97 Aligned_cols=13 Identities=31% Similarity=0.723 Sum_probs=10.5
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2ysp_A 12 PYKCEKCGKGYNS 24 (46)
T ss_dssp SEEETTTTEEESC
T ss_pred CeECCCCCCccCC
Confidence 4789999998853
No 91
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.01 E-value=12 Score=18.04 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=10.4
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2emi_A 12 HYECSECGKAFIQ 24 (46)
T ss_dssp CEECSSSCCEESS
T ss_pred CCCCCCCCcccCC
Confidence 3789999998863
No 92
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=48.87 E-value=5.1 Score=17.14 Aligned_cols=11 Identities=27% Similarity=0.640 Sum_probs=8.5
Q ss_pred EeeCCCCcEEe
Q 036150 26 WSCKYCGKVKA 36 (77)
Q Consensus 26 WkCkkCgkt~A 36 (77)
..|..|++.|.
T Consensus 4 ~~C~~C~k~f~ 14 (30)
T 2lvr_A 4 YVCIHCQRQFA 14 (30)
Confidence 57888888775
No 93
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=42.77 E-value=12 Score=18.02 Aligned_cols=12 Identities=42% Similarity=0.941 Sum_probs=10.0
Q ss_pred EEeeCCCCcEEe
Q 036150 25 IWSCKYCGKVKA 36 (77)
Q Consensus 25 IWkCkkCgkt~A 36 (77)
-+.|..|++.|.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2ema_A 12 RYKCNECGKVFS 23 (46)
T ss_dssp CEECSSSCCEES
T ss_pred CcCCCCCcchhC
Confidence 378999999885
No 94
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.59 E-value=12 Score=18.02 Aligned_cols=13 Identities=31% Similarity=0.744 Sum_probs=10.5
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2emh_A 12 PYICTVCGKAFTD 24 (46)
T ss_dssp SEECTTTCCEESS
T ss_pred CcCCCCCCchhCC
Confidence 4789999998864
No 95
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=42.56 E-value=11 Score=22.79 Aligned_cols=31 Identities=10% Similarity=-0.089 Sum_probs=21.3
Q ss_pred eeeeeeCCCCceeeEEeEEEEEeeCCCCcEE
Q 036150 5 YRVLRRKRTKKYAVKRKAVGIWSCKYCGKVK 35 (77)
Q Consensus 5 ~~~~~~~~CGK~~VKR~AVGIWkCkkCgkt~ 35 (77)
..+|.||.|+..=.--..-|-=.|+.|+..+
T Consensus 8 LeiL~CP~ck~~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 8 LEVLACPKDKGPLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp TCCCBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred HHHhCCCCCCCcCeEeCCCCEEEcCCCCccc
Confidence 4678999999864333334566799997654
No 96
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=42.42 E-value=12 Score=18.12 Aligned_cols=12 Identities=33% Similarity=0.769 Sum_probs=10.1
Q ss_pred EEeeCCCCcEEe
Q 036150 25 IWSCKYCGKVKA 36 (77)
Q Consensus 25 IWkCkkCgkt~A 36 (77)
-+.|..|++.|.
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2emj_A 12 PFECAECGKSFS 23 (46)
T ss_dssp SEECSSSSCEES
T ss_pred CEECCCCCcccC
Confidence 378999999885
No 97
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=42.37 E-value=9 Score=23.65 Aligned_cols=48 Identities=17% Similarity=0.060 Sum_probs=25.9
Q ss_pred eeeCCCCce--eeEE-eEEEEEeeCCCCcEEeCccccc-ccccccccHHHHHhh
Q 036150 8 LRRKRTKKY--AVKR-KAVGIWSCKYCGKVKAGALNAA-TLAAFTALPAAAAAL 57 (77)
Q Consensus 8 ~~~~~CGK~--~VKR-~AVGIWkCkkCgkt~AGGAYtp-~Tpag~s~~~~~~~~ 57 (77)
..||-|+.. +++= ..-|+|+|-.||+ .|.+..+ .---+.+-+.|...|
T Consensus 38 ~~CPfh~e~~pSf~V~~~k~~~~Cf~cg~--gGd~i~fv~~~~~~sf~eA~~~L 89 (103)
T 1d0q_A 38 GLCPFHGEKTPSFSVSPEKQIFHCFGCGA--GGNAFTFLMDIEGIPFVEAAKRL 89 (103)
T ss_dssp ECCSSSCCSSCCEEEETTTTEEEETTTCC--EECHHHHHHHHHTCCHHHHHHHH
T ss_pred EECCCCCCCCCcEEEEcCCCEEEECCCCC--CCCHHHHHHHHhCCCHHHHHHHH
Confidence 457777643 3332 2458999999995 4555443 111244444444433
No 98
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.16 E-value=12 Score=18.04 Aligned_cols=13 Identities=31% Similarity=0.721 Sum_probs=10.5
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2yto_A 12 PYKCSDCGKAFTR 24 (46)
T ss_dssp CEECSSSCCEESS
T ss_pred CEECcccCCccCC
Confidence 3789999998863
No 99
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.62 E-value=13 Score=17.84 Aligned_cols=13 Identities=31% Similarity=0.685 Sum_probs=10.5
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2en1_A 12 PFKCEECGKRFTQ 24 (46)
T ss_dssp SEEETTTTEEESS
T ss_pred CeeCCCCCcccCC
Confidence 4789999998864
No 100
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.51 E-value=13 Score=17.98 Aligned_cols=13 Identities=38% Similarity=0.759 Sum_probs=10.4
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2em2_A 12 PFKCKECGKAFRQ 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CEECCcCCchhCC
Confidence 4789999998853
No 101
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.37 E-value=13 Score=17.71 Aligned_cols=13 Identities=15% Similarity=0.347 Sum_probs=10.3
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (44)
T 2emb_A 12 RYECSKCQATFNL 24 (44)
T ss_dssp SEECTTTCCEESC
T ss_pred CeECCCCCCccCC
Confidence 3789999998853
No 102
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.36 E-value=13 Score=17.70 Aligned_cols=13 Identities=23% Similarity=0.631 Sum_probs=10.4
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (44)
T 2yu5_A 12 PFKCSKCDRVFTQ 24 (44)
T ss_dssp SEECSSSSCEESS
T ss_pred CeECCCCCchhCC
Confidence 3789999998863
No 103
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.34 E-value=13 Score=17.75 Aligned_cols=13 Identities=23% Similarity=0.634 Sum_probs=10.4
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 10 ~~~C~~C~k~f~~ 22 (44)
T 2emx_A 10 PFGCSCCEKAFSS 22 (44)
T ss_dssp CEECSSSSCEESS
T ss_pred CccCCCCCcccCC
Confidence 4789999998853
No 104
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.26 E-value=13 Score=17.79 Aligned_cols=13 Identities=31% Similarity=0.513 Sum_probs=10.4
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2epw_A 12 PCKCTECGKAFCW 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeeCCCCCCccCC
Confidence 3789999998864
No 105
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=41.11 E-value=7.2 Score=16.70 Aligned_cols=11 Identities=18% Similarity=0.836 Sum_probs=7.8
Q ss_pred EeeCCCCcEEe
Q 036150 26 WSCKYCGKVKA 36 (77)
Q Consensus 26 WkCkkCgkt~A 36 (77)
..|..|++.|.
T Consensus 3 ~~C~~C~k~f~ 13 (30)
T 1paa_A 3 YACGLCNRAFT 13 (30)
T ss_dssp SBCTTTCCBCS
T ss_pred cCCcccCcccC
Confidence 36888888764
No 106
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=40.94 E-value=19 Score=24.86 Aligned_cols=32 Identities=9% Similarity=-0.090 Sum_probs=24.2
Q ss_pred ceeeeeeeCCCCceee---------------EEeEEEEEeeCCCCcE
Q 036150 3 SYYRVLRRKRTKKYAV---------------KRKAVGIWSCKYCGKV 34 (77)
Q Consensus 3 ~~~~~~~~~~CGK~~V---------------KR~AVGIWkCkkCgkt 34 (77)
.||--+.|.|||-..= |..+-=+|+|+.|++.
T Consensus 33 ~~~fkvkC~~C~E~~~kv~v~~~e~~ei~gsRG~aNfv~KCk~C~re 79 (164)
T 1zso_A 33 LWIFNIRDSTSSLTRDNIQFRKTDILEIPNSRGTANFMIKWTEYPKY 79 (164)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBEECTTSSCEESEEECCSSSSCC
T ss_pred EEEEEEEECCCCcccCCEEEcchheeecCCCCcceeEEEeccccCCc
Confidence 3666789999987643 4566778999999874
No 107
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.89 E-value=13 Score=17.84 Aligned_cols=13 Identities=31% Similarity=0.769 Sum_probs=10.5
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eml_A 12 PYECSVCGKAFSH 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeeCCCcCCccCC
Confidence 4789999998863
No 108
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.84 E-value=13 Score=17.76 Aligned_cols=13 Identities=31% Similarity=0.726 Sum_probs=10.2
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eor_A 12 PYNCEECGKAFIH 24 (46)
T ss_dssp SEECTTTCCEESS
T ss_pred CccCCCCCCCcCC
Confidence 3789999998853
No 109
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=40.81 E-value=14 Score=23.69 Aligned_cols=34 Identities=15% Similarity=0.339 Sum_probs=26.7
Q ss_pred ceeeeeeeCCCCceee-EEeEEEEEeeCCCCcEEe
Q 036150 3 SYYRVLRRKRTKKYAV-KRKAVGIWSCKYCGKVKA 36 (77)
Q Consensus 3 ~~~~~~~~~~CGK~~V-KR~AVGIWkCkkCgkt~A 36 (77)
|||--.+||.|++..+ ==.|.-.=.|..|+.+.+
T Consensus 28 S~Fm~VkCp~C~n~q~VFShA~t~V~C~~Cg~~L~ 62 (81)
T 2xzm_6 28 SYFMDVKCAQCQNIQMIFSNAQSTIICEKCSAILC 62 (81)
T ss_dssp CCEEEEECSSSCCEEEEETTCSSCEECSSSCCEEE
T ss_pred CcEEEeECCCCCCeeEEEecCccEEEccCCCCEEe
Confidence 6787889999999874 344666678999999864
No 110
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.79 E-value=13 Score=17.81 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=10.3
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-..|..|++.|.-
T Consensus 12 ~~~C~~C~k~F~~ 24 (44)
T 2epv_A 12 PYECNECGKAFIW 24 (44)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCCCCcccCc
Confidence 3689999998854
No 111
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.39 E-value=14 Score=17.80 Aligned_cols=13 Identities=31% Similarity=0.659 Sum_probs=10.6
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2ytg_A 12 PFKCGECGKSYNQ 24 (46)
T ss_dssp SEECTTTCCEESS
T ss_pred CeECCCCCcccCC
Confidence 4789999998864
No 112
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=46.47 E-value=5.9 Score=17.03 Aligned_cols=11 Identities=36% Similarity=0.833 Sum_probs=8.1
Q ss_pred EeeCCCCcEEe
Q 036150 26 WSCKYCGKVKA 36 (77)
Q Consensus 26 WkCkkCgkt~A 36 (77)
..|..|++.|.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 2lvt_A 3 CQCVMCGKAFT 13 (29)
Confidence 46888888765
No 113
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.94 E-value=14 Score=17.68 Aligned_cols=13 Identities=31% Similarity=0.526 Sum_probs=10.5
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2en8_A 12 SHTCDECGKNFCY 24 (46)
T ss_dssp SEECTTTCCEESS
T ss_pred CeECCCcCcccCC
Confidence 3789999998864
No 114
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.92 E-value=14 Score=17.74 Aligned_cols=13 Identities=31% Similarity=0.746 Sum_probs=10.5
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2ep2_A 12 PYECSICGKSFTK 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CcCCCCCCcccCC
Confidence 4789999998864
No 115
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=39.87 E-value=14 Score=17.65 Aligned_cols=13 Identities=38% Similarity=0.687 Sum_probs=10.5
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2em9_A 12 PYNCKECGKSFRW 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCccccccCC
Confidence 4789999998853
No 116
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.85 E-value=14 Score=17.74 Aligned_cols=13 Identities=38% Similarity=0.825 Sum_probs=10.4
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2ytk_A 12 PYKCNECGKVFTQ 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CEeCCcCCCccCC
Confidence 3789999998863
No 117
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=39.79 E-value=16 Score=21.16 Aligned_cols=13 Identities=31% Similarity=0.915 Sum_probs=11.0
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
+|+|..||++.-+
T Consensus 3 ~y~C~~CGyvYd~ 15 (55)
T 2v3b_B 3 KWQCVVCGFIYDE 15 (55)
T ss_dssp EEEETTTCCEEET
T ss_pred cEEeCCCCeEECC
Confidence 6999999998754
No 118
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.66 E-value=14 Score=17.72 Aligned_cols=13 Identities=31% Similarity=0.603 Sum_probs=10.4
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2em7_A 12 PYKCEECGKGFIC 24 (46)
T ss_dssp SEECSSSCCEESC
T ss_pred CccCCCccchhCC
Confidence 3789999998854
No 119
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.66 E-value=14 Score=17.63 Aligned_cols=13 Identities=38% Similarity=0.884 Sum_probs=10.7
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eme_A 12 PYVCDYCGKAFGL 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCCCChhhCC
Confidence 4789999998864
No 120
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.59 E-value=14 Score=17.71 Aligned_cols=13 Identities=38% Similarity=0.784 Sum_probs=10.4
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2ene_A 12 PYKCNECGKVFRH 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCCCCchhCC
Confidence 3789999998864
No 121
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.52 E-value=14 Score=17.72 Aligned_cols=13 Identities=38% Similarity=0.790 Sum_probs=10.5
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2eq0_A 12 PYKCHECGKVFRR 24 (46)
T ss_dssp CEECTTTCCEESS
T ss_pred CeECCCCCchhCC
Confidence 3789999998864
No 122
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.48 E-value=14 Score=17.70 Aligned_cols=13 Identities=31% Similarity=0.572 Sum_probs=10.4
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2ytj_A 12 PYICAECGKAFTI 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCCCChhhCC
Confidence 4789999998864
No 123
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.27 E-value=15 Score=17.63 Aligned_cols=13 Identities=31% Similarity=0.552 Sum_probs=10.5
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
.+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2en3_A 12 PFQCKECGMNFSW 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeeCcccChhhCC
Confidence 3789999998853
No 124
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.15 E-value=15 Score=17.67 Aligned_cols=13 Identities=38% Similarity=0.825 Sum_probs=10.6
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2yu8_A 12 PYKCNECGKVFTQ 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCcCCchhCC
Confidence 3789999998864
No 125
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=38.93 E-value=14 Score=18.50 Aligned_cols=11 Identities=36% Similarity=1.008 Sum_probs=9.2
Q ss_pred EeeCCCCcEEe
Q 036150 26 WSCKYCGKVKA 36 (77)
Q Consensus 26 WkCkkCgkt~A 36 (77)
..|..|++.|.
T Consensus 8 ~~C~~C~k~F~ 18 (48)
T 3iuf_A 8 YACDICGKRYK 18 (48)
T ss_dssp EECTTTCCEES
T ss_pred EECCCcCcccC
Confidence 57999999885
No 126
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=38.92 E-value=20 Score=19.57 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=24.0
Q ss_pred eeCCCCceee-----EEeEEEEEe-------eCCCCcEEeCccccc
Q 036150 9 RRKRTKKYAV-----KRKAVGIWS-------CKYCGKVKAGALNAA 42 (77)
Q Consensus 9 ~~~~CGK~~V-----KR~AVGIWk-------CkkCgkt~AGGAYtp 42 (77)
+|..|++.-. -+..-..|| |..|++.+.|..|..
T Consensus 4 ~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~ 49 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMP 49 (65)
T ss_dssp ECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEE
T ss_pred CCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEE
Confidence 5778887643 122234898 899999998887765
No 127
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.73 E-value=15 Score=17.54 Aligned_cols=13 Identities=31% Similarity=0.552 Sum_probs=10.4
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2emm_A 12 PHKCNECGKSFIQ 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeeCCCCChhhCC
Confidence 3789999998854
No 128
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.62 E-value=15 Score=17.70 Aligned_cols=13 Identities=23% Similarity=0.578 Sum_probs=10.3
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-..|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eoy_A 12 CFKCNKCEKTFSC 24 (46)
T ss_dssp CEECSSSCCEESS
T ss_pred CEECcCCCCcCCC
Confidence 3789999998853
No 129
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.53 E-value=16 Score=17.55 Aligned_cols=13 Identities=23% Similarity=0.434 Sum_probs=10.4
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2ep0_A 12 PYKCDVCHKSFRY 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeeCcccCcccCC
Confidence 4789999998853
No 130
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=38.52 E-value=9.3 Score=23.10 Aligned_cols=23 Identities=26% Similarity=0.733 Sum_probs=16.8
Q ss_pred eeeeeCCCCceeeEEeEEEEEeeCCCCcE
Q 036150 6 RVLRRKRTKKYAVKRKAVGIWSCKYCGKV 34 (77)
Q Consensus 6 ~~~~~~~CGK~~VKR~AVGIWkCkkCgkt 34 (77)
++-.|++||...++-+ |..||..
T Consensus 4 ~mr~C~~Cg~YTLk~~------CP~CG~~ 26 (60)
T 2aus_D 4 RIRKCPKCGRYTLKET------CPVCGEK 26 (60)
T ss_dssp CCEECTTTCCEESSSB------CTTTCSB
T ss_pred cceECCCCCCEEcccc------CcCCCCc
Confidence 5667999998888433 7778764
No 131
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.30 E-value=15 Score=17.67 Aligned_cols=12 Identities=33% Similarity=0.767 Sum_probs=9.8
Q ss_pred EeeCCCCcEEeC
Q 036150 26 WSCKYCGKVKAG 37 (77)
Q Consensus 26 WkCkkCgkt~AG 37 (77)
..|..|++.|.-
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2em4_A 13 YECIECGKAFKT 24 (46)
T ss_dssp EECSSSCCEESS
T ss_pred cCCCCCCCccCC
Confidence 689999998863
No 132
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=38.27 E-value=15 Score=18.53 Aligned_cols=13 Identities=23% Similarity=0.317 Sum_probs=10.4
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 24 ~~~C~~C~k~f~~ 36 (54)
T 1yui_A 24 PATCPICYAVIRQ 36 (54)
T ss_dssp CEECTTTCCEESS
T ss_pred CccCCCCCcccCC
Confidence 4789999998853
No 133
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=38.18 E-value=16 Score=24.71 Aligned_cols=14 Identities=21% Similarity=0.721 Sum_probs=12.4
Q ss_pred EEEeeCCCCcEEeC
Q 036150 24 GIWSCKYCGKVKAG 37 (77)
Q Consensus 24 GIWkCkkCgkt~AG 37 (77)
-+|.|..||++.-|
T Consensus 137 ~~~~C~~CG~i~~~ 150 (170)
T 3pwf_A 137 KVYICPICGYTAVD 150 (170)
T ss_dssp CEEECTTTCCEEES
T ss_pred CeeEeCCCCCeeCC
Confidence 58999999999874
No 134
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.99 E-value=16 Score=17.64 Aligned_cols=13 Identities=31% Similarity=0.687 Sum_probs=10.4
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2eoo_A 12 PYGCNECGKNFGR 24 (46)
T ss_dssp CEECSSSCCEESS
T ss_pred CEEccccCcccCC
Confidence 3789999998863
No 135
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.81 E-value=10 Score=17.98 Aligned_cols=13 Identities=38% Similarity=0.749 Sum_probs=10.0
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (44)
T 2eoj_A 12 PYECCECGKVFSR 24 (44)
T ss_dssp SCEETTTTEECSS
T ss_pred CeeCCCCCCccCC
Confidence 3789999988753
No 136
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=37.68 E-value=15 Score=17.66 Aligned_cols=13 Identities=31% Similarity=0.738 Sum_probs=10.4
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2el6_A 12 PYKCSQCEKSFSG 24 (46)
T ss_dssp SEECSSSSCEESS
T ss_pred CeECCCCCcccCC
Confidence 3789999998864
No 137
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.50 E-value=9.8 Score=18.26 Aligned_cols=13 Identities=31% Similarity=0.723 Sum_probs=10.1
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eq3_A 12 PYECNQCGKAFSV 24 (46)
T ss_dssp SSEETTTTEECSS
T ss_pred CeECCCCChhhCC
Confidence 3789999998753
No 138
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.47 E-value=17 Score=17.43 Aligned_cols=13 Identities=31% Similarity=0.759 Sum_probs=10.4
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2en6_A 12 PYGCNECGKTFSQ 24 (46)
T ss_dssp CEEETTTTEEESS
T ss_pred CeECCCCCcccCc
Confidence 4789999998863
No 139
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=37.37 E-value=18 Score=20.69 Aligned_cols=13 Identities=38% Similarity=0.751 Sum_probs=10.8
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
.|+|..||++.-+
T Consensus 2 ~~~C~~CGyvYd~ 14 (52)
T 1yk4_A 2 KLSCKICGYIYDE 14 (52)
T ss_dssp EEEESSSSCEEET
T ss_pred cEEeCCCCeEECC
Confidence 6999999998644
No 140
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.24 E-value=16 Score=17.48 Aligned_cols=13 Identities=31% Similarity=0.657 Sum_probs=10.3
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2emp_A 12 PYMCNECGKAFSV 24 (46)
T ss_dssp SEECSSSCCEESC
T ss_pred CeECCCCCchhCC
Confidence 3789999998853
No 141
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=36.98 E-value=18 Score=18.93 Aligned_cols=13 Identities=31% Similarity=1.050 Sum_probs=10.6
Q ss_pred EEEeeCCCCcEEe
Q 036150 24 GIWSCKYCGKVKA 36 (77)
Q Consensus 24 GIWkCkkCgkt~A 36 (77)
.+++|+.||..+.
T Consensus 5 ~fY~C~~CGnive 17 (36)
T 1dxg_A 5 DVYKCELCGQVVK 17 (36)
T ss_dssp CEEECTTTCCEEE
T ss_pred cEEEcCCCCcEEE
Confidence 4789999988775
No 142
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.57 E-value=17 Score=17.42 Aligned_cols=13 Identities=31% Similarity=0.578 Sum_probs=10.3
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2enc_A 12 PFKCEECGKGFYT 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CcCCCCCCCcCCC
Confidence 3789999998853
No 143
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=36.53 E-value=17 Score=17.38 Aligned_cols=13 Identities=23% Similarity=0.524 Sum_probs=10.4
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2el4_A 12 PYGCSQCAKTFSL 24 (46)
T ss_dssp SEECSSSSCEESS
T ss_pred ceECCCCCchhCC
Confidence 3789999998864
No 144
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=36.50 E-value=11 Score=24.27 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=26.4
Q ss_pred ceeeeeeeCCCCceee-EEeEEEEEeeCCCCcEEe
Q 036150 3 SYYRVLRRKRTKKYAV-KRKAVGIWSCKYCGKVKA 36 (77)
Q Consensus 3 ~~~~~~~~~~CGK~~V-KR~AVGIWkCkkCgkt~A 36 (77)
|||--.+||+|++..+ ==.+.-.=.|..|+.+.+
T Consensus 30 S~Fm~VkCp~C~~~q~VFSha~t~V~C~~Cg~~L~ 64 (82)
T 3u5c_b 30 SYFLDVKCPGCLNITTVFSHAQTAVTCESCSTILC 64 (82)
T ss_dssp CCEEEEECTTSCSCEEEESBCSSCCCCSSSCCCCE
T ss_pred CcEEEEECCCCCCeeEEEecCCeEEEccccCCEEe
Confidence 7888889999999974 444566668999998764
No 145
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.44 E-value=17 Score=17.40 Aligned_cols=13 Identities=31% Similarity=0.687 Sum_probs=10.4
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2ytd_A 12 PYKCSECGKAFHR 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCCCCCeeCC
Confidence 4789999998853
No 146
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=36.23 E-value=11 Score=19.32 Aligned_cols=11 Identities=27% Similarity=0.679 Sum_probs=8.8
Q ss_pred EeeCCCCcEEe
Q 036150 26 WSCKYCGKVKA 36 (77)
Q Consensus 26 WkCkkCgkt~A 36 (77)
.+|..|+|.|.
T Consensus 9 ~~C~~CgK~F~ 19 (36)
T 1fv5_A 9 FMCLPCGIAFS 19 (36)
T ss_dssp CEETTTTEECS
T ss_pred eECCCCCCccC
Confidence 57888998875
No 147
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.78 E-value=18 Score=17.42 Aligned_cols=13 Identities=23% Similarity=0.447 Sum_probs=10.4
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2em5_A 12 SHQCHECGRGFTL 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCcCCCccCC
Confidence 3789999998864
No 148
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=35.50 E-value=8.5 Score=24.95 Aligned_cols=34 Identities=15% Similarity=0.250 Sum_probs=26.3
Q ss_pred ceeeeeeeCCCCcee-eEEeEEEEEeeCCCCcEEe
Q 036150 3 SYYRVLRRKRTKKYA-VKRKAVGIWSCKYCGKVKA 36 (77)
Q Consensus 3 ~~~~~~~~~~CGK~~-VKR~AVGIWkCkkCgkt~A 36 (77)
|||--.+||.|++.. |=-.|.-.=.|..|+.+.+
T Consensus 32 S~Fm~VkCp~C~~~~~VFShA~t~V~C~~CgtvL~ 66 (86)
T 3iz6_X 32 SFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLC 66 (86)
T ss_dssp -CEEEEECTTTCCEEEEETTCSSCCCCSSSCCCCS
T ss_pred CcEeEEECCCCCCeeEEEecCCcEEEccCCCCEee
Confidence 677778999999986 5555666778999998764
No 149
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=35.44 E-value=15 Score=21.46 Aligned_cols=11 Identities=27% Similarity=1.153 Sum_probs=9.2
Q ss_pred EEEeeCCCCcE
Q 036150 24 GIWSCKYCGKV 34 (77)
Q Consensus 24 GIWkCkkCgkt 34 (77)
.-|+|.+|++.
T Consensus 12 D~WkC~~C~~~ 22 (46)
T 2c6a_A 12 DYWKCTSCNEM 22 (46)
T ss_dssp GCEECTTTCCE
T ss_pred ceEeccccccc
Confidence 67999999964
No 150
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=35.39 E-value=7.9 Score=17.77 Aligned_cols=11 Identities=27% Similarity=0.606 Sum_probs=8.1
Q ss_pred EeeCCCCcEEe
Q 036150 26 WSCKYCGKVKA 36 (77)
Q Consensus 26 WkCkkCgkt~A 36 (77)
..|..|++.|.
T Consensus 3 ~~C~~C~k~F~ 13 (33)
T 1rim_A 3 FACPECPKRFM 13 (33)
T ss_dssp CCCSSSCCCCS
T ss_pred ccCCCCCchhC
Confidence 46888888764
No 151
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.20 E-value=19 Score=17.31 Aligned_cols=12 Identities=33% Similarity=0.672 Sum_probs=10.0
Q ss_pred EEeeCCCCcEEe
Q 036150 25 IWSCKYCGKVKA 36 (77)
Q Consensus 25 IWkCkkCgkt~A 36 (77)
-+.|..|++.|.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2em8_A 12 PYKCVECGKGYK 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeECcccCchhC
Confidence 478999999885
No 152
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.19 E-value=18 Score=17.29 Aligned_cols=13 Identities=23% Similarity=0.639 Sum_probs=10.3
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2yso_A 12 SHQCRECGEIFFQ 24 (46)
T ss_dssp CEECTTTCCEESS
T ss_pred CEEccccChhhCC
Confidence 3789999998853
No 153
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Probab=34.91 E-value=22 Score=22.57 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=23.9
Q ss_pred eeCCCCceeeEE----------eEEEEEeeCCCCcEEeCcccccc
Q 036150 9 RRKRTKKYAVKR----------KAVGIWSCKYCGKVKAGALNAAT 43 (77)
Q Consensus 9 ~~~~CGK~~VKR----------~AVGIWkCkkCgkt~AGGAYtp~ 43 (77)
.|.+|| +.||. .+..--.|-.|++.|-|..|.--
T Consensus 12 ~C~~Cg-d~lKK~kv~~H~~~Cr~~~~~SCIDC~~~F~~~~y~~H 55 (79)
T 1wjv_A 12 TCNACG-ESVKKIQVEKHVSNCRNCECLSCIDCGKDFWGDDYKSH 55 (79)
T ss_dssp EESSSC-CEEETTHHHHHHHHCTTCCEEEETTTTEEEEGGGTTTC
T ss_pred EcCCCC-CeeecccchhHHhhCCCCCcEEecccCCeeCCCCEeCE
Confidence 577888 44443 23345788889999999888754
No 154
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.90 E-value=18 Score=19.29 Aligned_cols=12 Identities=25% Similarity=0.512 Sum_probs=8.3
Q ss_pred EEeeCCCCcEEe
Q 036150 25 IWSCKYCGKVKA 36 (77)
Q Consensus 25 IWkCkkCgkt~A 36 (77)
-++|..|++.|.
T Consensus 7 ~~~C~~C~k~f~ 18 (78)
T 2d9h_A 7 GLQCEICGFTCR 18 (78)
T ss_dssp CEECSSSCCEES
T ss_pred CeECCCCCCeeC
Confidence 367777777764
No 155
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=34.86 E-value=18 Score=18.54 Aligned_cols=14 Identities=29% Similarity=0.729 Sum_probs=10.7
Q ss_pred EEEeeCCCCcEEeC
Q 036150 24 GIWSCKYCGKVKAG 37 (77)
Q Consensus 24 GIWkCkkCgkt~AG 37 (77)
..+.|..|++.|.-
T Consensus 9 k~~~C~~C~k~f~~ 22 (66)
T 2drp_A 9 HTYRCKVCSRVYTH 22 (66)
T ss_dssp TEEECTTTCCEESS
T ss_pred cceECCCCcchhCC
Confidence 35889999988753
No 156
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=34.78 E-value=15 Score=18.96 Aligned_cols=11 Identities=27% Similarity=0.694 Sum_probs=9.4
Q ss_pred EEEeeCCCCcE
Q 036150 24 GIWSCKYCGKV 34 (77)
Q Consensus 24 GIWkCkkCgkt 34 (77)
|=|.|.+|+..
T Consensus 4 gDW~C~~C~~~ 14 (32)
T 2lk0_A 4 EDWLCNKCCLN 14 (32)
T ss_dssp SEEECTTTCCE
T ss_pred CCCCcCcCcCC
Confidence 77999999875
No 157
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=34.73 E-value=8.8 Score=25.62 Aligned_cols=32 Identities=13% Similarity=0.277 Sum_probs=22.6
Q ss_pred eeeeCCCCceeeEEe----EEEEEeeCCCCcEEeCc
Q 036150 7 VLRRKRTKKYAVKRK----AVGIWSCKYCGKVKAGA 38 (77)
Q Consensus 7 ~~~~~~CGK~~VKR~----AVGIWkCkkCgkt~AGG 38 (77)
+.-||.||..=+-+. ..-+|.|+.|++..--.
T Consensus 24 ~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~~~~ 59 (133)
T 3qt1_I 24 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAG 59 (133)
T ss_dssp CCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBCCCS
T ss_pred CeeCCCCCCEeeECccCCCceeEEECCCCCCcEEcC
Confidence 345899998853333 35589999999977543
No 158
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.58 E-value=9.2 Score=17.93 Aligned_cols=13 Identities=31% Similarity=0.764 Sum_probs=10.0
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 11 ~~~C~~C~k~f~~ 23 (42)
T 2ytb_A 11 PYRCDQCGKAFSQ 23 (42)
T ss_dssp SBCCTTTTCCBSS
T ss_pred CeeCCCccchhCC
Confidence 3789999988753
No 159
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=34.40 E-value=8.9 Score=22.76 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=11.6
Q ss_pred eeeeCCCCceeeEEeEEEEEeeCCCC
Q 036150 7 VLRRKRTKKYAVKRKAVGIWSCKYCG 32 (77)
Q Consensus 7 ~~~~~~CGK~~VKR~AVGIWkCkkCg 32 (77)
+..||+||..++.=.. |..||
T Consensus 30 l~~c~~cGe~~~~H~v-----c~~CG 50 (60)
T 3v2d_5 30 LVPCPECKAMKPPHTV-----CPECG 50 (60)
T ss_dssp CEECTTTCCEECTTSC-----CTTTC
T ss_pred eeECCCCCCeecceEE-----cCCCC
Confidence 3457777775543222 66665
No 160
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=34.23 E-value=20 Score=22.53 Aligned_cols=14 Identities=21% Similarity=0.536 Sum_probs=11.8
Q ss_pred EEEeeCCCCcEEeC
Q 036150 24 GIWSCKYCGKVKAG 37 (77)
Q Consensus 24 GIWkCkkCgkt~AG 37 (77)
.+|.|..||++.-+
T Consensus 26 ~~y~C~vCGyvYD~ 39 (81)
T 2kn9_A 26 KLFRCIQCGFEYDE 39 (81)
T ss_dssp CEEEETTTCCEEET
T ss_pred ceEEeCCCCEEEcC
Confidence 47999999998754
No 161
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=34.22 E-value=19 Score=17.84 Aligned_cols=12 Identities=25% Similarity=0.683 Sum_probs=10.2
Q ss_pred EEeeCCCCcEEe
Q 036150 25 IWSCKYCGKVKA 36 (77)
Q Consensus 25 IWkCkkCgkt~A 36 (77)
.+.|..|++.|.
T Consensus 29 ~~~C~~C~~~f~ 40 (57)
T 1bbo_A 29 PYHCTYCNFSFK 40 (57)
T ss_dssp CEECSSSSCEES
T ss_pred CccCCCCCchhc
Confidence 489999999885
No 162
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.11 E-value=9.6 Score=18.38 Aligned_cols=13 Identities=38% Similarity=0.825 Sum_probs=10.0
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2enf_A 12 PYKCNECGKVFTQ 24 (46)
T ss_dssp SCBCSSSCCBCSS
T ss_pred CeECCCCCcccCC
Confidence 3789999998753
No 163
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.11 E-value=9.5 Score=18.39 Aligned_cols=12 Identities=42% Similarity=0.836 Sum_probs=9.6
Q ss_pred EEeeCCCCcEEe
Q 036150 25 IWSCKYCGKVKA 36 (77)
Q Consensus 25 IWkCkkCgkt~A 36 (77)
-+.|..|++.|.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2emg_A 12 PFICSECGKVFT 23 (46)
T ss_dssp SCBCTTTCCBCS
T ss_pred CEECCccCcccC
Confidence 378999998875
No 164
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=33.49 E-value=20 Score=22.68 Aligned_cols=34 Identities=9% Similarity=0.022 Sum_probs=23.8
Q ss_pred eeeCCCCceeeEEeEEEEEeeCCCCcEEeCcccccc
Q 036150 8 LRRKRTKKYAVKRKAVGIWSCKYCGKVKAGALNAAT 43 (77)
Q Consensus 8 ~~~~~CGK~~VKR~AVGIWkCkkCgkt~AGGAYtp~ 43 (77)
+.||.|...-.+ . .+..+|..|++-+.-.|+=|+
T Consensus 3 ~~CP~C~~~l~~-~-~~~~~C~~C~~~~~~~afCPe 36 (81)
T 2jrp_A 3 ITCPVCHHALER-N-GDTAHCETCAKDFSLQALCPD 36 (81)
T ss_dssp CCCSSSCSCCEE-C-SSEEECTTTCCEEEEEEECSS
T ss_pred CCCCCCCCcccc-C-CCceECccccccCCCcccCcc
Confidence 457888776433 2 347788888888888887774
No 165
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=33.22 E-value=21 Score=22.74 Aligned_cols=15 Identities=27% Similarity=0.687 Sum_probs=12.2
Q ss_pred EEEEeeCCCCcEEeC
Q 036150 23 VGIWSCKYCGKVKAG 37 (77)
Q Consensus 23 VGIWkCkkCgkt~AG 37 (77)
..+|.|..||++.-+
T Consensus 33 m~~y~C~vCGyvYD~ 47 (87)
T 1s24_A 33 YLKWICITCGHIYDE 47 (87)
T ss_dssp CCEEEETTTTEEEET
T ss_pred CceEECCCCCeEecC
Confidence 458999999998754
No 166
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=32.76 E-value=23 Score=17.32 Aligned_cols=13 Identities=31% Similarity=0.749 Sum_probs=10.5
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
.+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (48)
T 2epr_A 12 QVACEICGKIFRD 24 (48)
T ss_dssp SEEETTTTEEESS
T ss_pred CeeCCCCCcccCC
Confidence 4789999998853
No 167
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=32.76 E-value=11 Score=30.64 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=3.1
Q ss_pred eeeeCCCCceee-EEeEEEEEeeCCCCc
Q 036150 7 VLRRKRTKKYAV-KRKAVGIWSCKYCGK 33 (77)
Q Consensus 7 ~~~~~~CGK~~V-KR~AVGIWkCkkCgk 33 (77)
+-+|+.||.... .+... -|.|.+||.
T Consensus 540 ~~~C~~CGy~~~~~~~~~-~~~CP~Cg~ 566 (605)
T 1h7b_A 540 VDKCFTCGSTHEMTPTEN-GFVCSICGE 566 (605)
T ss_dssp EEET------------------------
T ss_pred CccCcccCCcCccCcccc-CCcCCCCCC
Confidence 668999997653 33322 399999995
No 168
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.59 E-value=11 Score=18.30 Aligned_cols=13 Identities=31% Similarity=0.774 Sum_probs=10.1
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2em6_A 12 CYKCDVCGKEFSQ 24 (46)
T ss_dssp CCBCSSSCCBCSS
T ss_pred CeECCCCCcccCC
Confidence 3789999988753
No 169
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=32.36 E-value=20 Score=21.70 Aligned_cols=13 Identities=31% Similarity=0.930 Sum_probs=10.8
Q ss_pred EEEeeCCCCcEEe
Q 036150 24 GIWSCKYCGKVKA 36 (77)
Q Consensus 24 GIWkCkkCgkt~A 36 (77)
.+|+|..||++.-
T Consensus 6 ~~y~C~vCGyiYd 18 (70)
T 1dx8_A 6 GKYECEACGYIYE 18 (70)
T ss_dssp SCEEETTTCCEEC
T ss_pred ceEEeCCCCEEEc
Confidence 3699999999864
No 170
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.99 E-value=11 Score=17.79 Aligned_cols=12 Identities=25% Similarity=0.728 Sum_probs=9.4
Q ss_pred EEeeCCCCcEEe
Q 036150 25 IWSCKYCGKVKA 36 (77)
Q Consensus 25 IWkCkkCgkt~A 36 (77)
-+.|..|++.|.
T Consensus 11 ~~~C~~C~k~f~ 22 (42)
T 2eos_A 11 PYPCEICGTRFR 22 (42)
T ss_dssp CBCCSSSCCCBS
T ss_pred CEECCCCCCccC
Confidence 368999998775
No 171
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=31.72 E-value=21 Score=18.61 Aligned_cols=13 Identities=15% Similarity=0.511 Sum_probs=10.2
Q ss_pred EEEeeCCCCcEEe
Q 036150 24 GIWSCKYCGKVKA 36 (77)
Q Consensus 24 GIWkCkkCgkt~A 36 (77)
.-+.|..|++.|.
T Consensus 48 ~~~~C~~C~~~f~ 60 (73)
T 1f2i_G 48 KPFQCRICMRNFS 60 (73)
T ss_dssp CCEECTTTCCEES
T ss_pred CCeECCCCCchhC
Confidence 3488999998875
No 172
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.71 E-value=9 Score=18.14 Aligned_cols=12 Identities=33% Similarity=0.850 Sum_probs=9.5
Q ss_pred EeeCCCCcEEeC
Q 036150 26 WSCKYCGKVKAG 37 (77)
Q Consensus 26 WkCkkCgkt~AG 37 (77)
+.|..|++.|.-
T Consensus 13 ~~C~~C~k~f~~ 24 (44)
T 2en7_A 13 YVCNECGKAFRS 24 (44)
T ss_dssp SCCTTTCCCCSS
T ss_pred eECCCCCCccCC
Confidence 689999988753
No 173
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=31.58 E-value=37 Score=17.99 Aligned_cols=27 Identities=19% Similarity=0.424 Sum_probs=17.0
Q ss_pred eeCCCCcee--eEE-eEEEEEeeCCCCcEE
Q 036150 9 RRKRTKKYA--VKR-KAVGIWSCKYCGKVK 35 (77)
Q Consensus 9 ~~~~CGK~~--VKR-~AVGIWkCkkCgkt~ 35 (77)
-||.|+... +.+ ...=+=+|+.||..-
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~~ 31 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAIR 31 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCcc
Confidence 367888763 333 344555799998764
No 174
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.20 E-value=9.4 Score=18.33 Aligned_cols=12 Identities=33% Similarity=0.742 Sum_probs=9.4
Q ss_pred EEeeCCCCcEEe
Q 036150 25 IWSCKYCGKVKA 36 (77)
Q Consensus 25 IWkCkkCgkt~A 36 (77)
-+.|..|++.|.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2ep1_A 12 PYECSDCGKSFI 23 (46)
T ss_dssp SSCCSSSCCCCS
T ss_pred CcCCCCCCchhC
Confidence 378999998875
No 175
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.00 E-value=12 Score=18.16 Aligned_cols=12 Identities=25% Similarity=0.750 Sum_probs=9.5
Q ss_pred EEeeCCCCcEEe
Q 036150 25 IWSCKYCGKVKA 36 (77)
Q Consensus 25 IWkCkkCgkt~A 36 (77)
-+.|..|++.|.
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2en9_A 12 LFKCNECKKTFT 23 (46)
T ss_dssp CCBCTTTCCBCS
T ss_pred CEECCccCcccC
Confidence 378999998775
No 176
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.65 E-value=12 Score=18.10 Aligned_cols=13 Identities=31% Similarity=0.687 Sum_probs=9.8
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2yth_A 12 PFQCEECGKRFTQ 24 (46)
T ss_dssp SBCCSSSCCCBSS
T ss_pred CCCCCCCCcccCC
Confidence 3789999987753
No 177
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.52 E-value=12 Score=17.94 Aligned_cols=13 Identities=31% Similarity=0.544 Sum_probs=10.1
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eop_A 12 PHECRECGKSFSF 24 (46)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CeeCCCCCchhCC
Confidence 3789999988753
No 178
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.46 E-value=12 Score=18.16 Aligned_cols=11 Identities=36% Similarity=1.017 Sum_probs=9.0
Q ss_pred EeeCCCCcEEe
Q 036150 26 WSCKYCGKVKA 36 (77)
Q Consensus 26 WkCkkCgkt~A 36 (77)
+.|..|++.|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2eon_A 13 YKCQVCGKAFR 23 (46)
T ss_dssp CBCSSSCCBCS
T ss_pred cCCCCCCcccC
Confidence 68999998875
No 179
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.04 E-value=15 Score=17.50 Aligned_cols=13 Identities=38% Similarity=0.825 Sum_probs=10.1
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2eoe_A 12 PYKCNECGKVFTQ 24 (46)
T ss_dssp SSEETTTTEECSS
T ss_pred CeECCCcChhhCC
Confidence 3789999998753
No 180
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=30.00 E-value=19 Score=25.62 Aligned_cols=26 Identities=12% Similarity=0.001 Sum_probs=14.5
Q ss_pred eeCCCCceeeEEeEEEEEeeCCCCcE
Q 036150 9 RRKRTKKYAVKRKAVGIWSCKYCGKV 34 (77)
Q Consensus 9 ~~~~CGK~~VKR~AVGIWkCkkCgkt 34 (77)
-|++||........--...|..|+..
T Consensus 109 fC~~CG~~~~~~~~~~~~~C~~C~~~ 134 (269)
T 1vk6_A 109 YCGYCGHEMYPSKTEWAMLCSHCRER 134 (269)
T ss_dssp BCTTTCCBEEECSSSSCEEESSSSCE
T ss_pred ccccCCCcCccCCCceeeeCCCCCCE
Confidence 36666666555444444566666553
No 181
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.79 E-value=13 Score=17.37 Aligned_cols=11 Identities=27% Similarity=0.730 Sum_probs=8.8
Q ss_pred EeeCCCCcEEe
Q 036150 26 WSCKYCGKVKA 36 (77)
Q Consensus 26 WkCkkCgkt~A 36 (77)
..|..|++.|.
T Consensus 11 ~~C~~C~k~f~ 21 (42)
T 2yte_A 11 YSCAECKETFS 21 (42)
T ss_dssp CBCTTTCCBCS
T ss_pred eECCCCCCccC
Confidence 67999998774
No 182
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=29.74 E-value=6.3 Score=17.92 Aligned_cols=11 Identities=27% Similarity=0.621 Sum_probs=7.4
Q ss_pred EeeCCCCcEEe
Q 036150 26 WSCKYCGKVKA 36 (77)
Q Consensus 26 WkCkkCgkt~A 36 (77)
.+|..|++.|.
T Consensus 3 ~~C~~C~k~f~ 13 (32)
T 2kfq_A 3 FACPACPKRFM 13 (32)
T ss_dssp SSSSSSCTTHH
T ss_pred CCCCCCCcccC
Confidence 36778887654
No 183
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.72 E-value=12 Score=17.94 Aligned_cols=13 Identities=38% Similarity=0.825 Sum_probs=10.0
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2ytn_A 12 PYKCNECGKVFTQ 24 (46)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CeECCCCCCeeCC
Confidence 3789999988753
No 184
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=29.70 E-value=25 Score=17.36 Aligned_cols=13 Identities=23% Similarity=0.744 Sum_probs=10.4
Q ss_pred EEEeeCCCCcEEe
Q 036150 24 GIWSCKYCGKVKA 36 (77)
Q Consensus 24 GIWkCkkCgkt~A 36 (77)
..+.|..|++.|.
T Consensus 31 ~~~~C~~C~~~f~ 43 (57)
T 3uk3_C 31 KPYKCEFCEYAAA 43 (57)
T ss_dssp CCEECSSSSCEES
T ss_pred CCcCCCCCcchhC
Confidence 3589999999875
No 185
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.52 E-value=11 Score=18.15 Aligned_cols=13 Identities=31% Similarity=0.749 Sum_probs=9.9
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eq1_A 12 PYKCNECGKAFRA 24 (46)
T ss_dssp CCCCTTTTCCCSS
T ss_pred CeECCcCChhhCC
Confidence 3789999988753
No 186
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=29.51 E-value=24 Score=18.40 Aligned_cols=12 Identities=17% Similarity=0.258 Sum_probs=8.7
Q ss_pred EEeeCCCCcEEe
Q 036150 25 IWSCKYCGKVKA 36 (77)
Q Consensus 25 IWkCkkCgkt~A 36 (77)
.++|..|++.|.
T Consensus 9 ~~~C~~C~k~f~ 20 (70)
T 1x5w_A 9 PEKCSECSYSCS 20 (70)
T ss_dssp SEECSSSSCEES
T ss_pred CeECCCCCcccC
Confidence 367888888775
No 187
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=29.43 E-value=13 Score=17.97 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=10.0
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2ely_A 12 PFKCVECGKGFSR 24 (46)
T ss_dssp SBCCSSSCCCBSS
T ss_pred CcccCccCcccCC
Confidence 4789999988753
No 188
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.22 E-value=13 Score=17.84 Aligned_cols=12 Identities=17% Similarity=0.396 Sum_probs=9.6
Q ss_pred EEeeCCCCcEEe
Q 036150 25 IWSCKYCGKVKA 36 (77)
Q Consensus 25 IWkCkkCgkt~A 36 (77)
-+.|..|++.|.
T Consensus 10 ~~~C~~C~k~f~ 21 (43)
T 2yrm_A 10 AFFCNECDCRFS 21 (43)
T ss_dssp CBCCSSSCCCBS
T ss_pred CEECCCCCCeeC
Confidence 378999998875
No 189
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=29.00 E-value=28 Score=22.67 Aligned_cols=24 Identities=8% Similarity=0.105 Sum_probs=17.1
Q ss_pred eeeCCCCceeeEEeEEEEEeeCCCCc
Q 036150 8 LRRKRTKKYAVKRKAVGIWSCKYCGK 33 (77)
Q Consensus 8 ~~~~~CGK~~VKR~AVGIWkCkkCgk 33 (77)
|+||.|+..--... +.|.|..|..
T Consensus 3 ~~Cp~C~~~~~~~~--~~~~C~~~~~ 26 (269)
T 1p91_A 3 FSCPLCHQPLSREK--NSYICPQRHQ 26 (269)
T ss_dssp BBCTTTCCBCEEET--TEEECTTCCE
T ss_pred ccCCCCCccceeCC--CEEECCCCCc
Confidence 78999977643322 5799998864
No 190
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.81 E-value=13 Score=17.74 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=10.0
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eov_A 12 PYKCSDCGKSFTW 24 (46)
T ss_dssp SCBCSSSCCBCSS
T ss_pred CccCCccChhhCC
Confidence 3789999998753
No 191
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=28.78 E-value=15 Score=24.39 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=11.9
Q ss_pred EeEEEEEeeCCCCcEE
Q 036150 20 RKAVGIWSCKYCGKVK 35 (77)
Q Consensus 20 R~AVGIWkCkkCgkt~ 35 (77)
+.-+==-+|++||++|
T Consensus 62 ~L~v~p~~C~~CG~~F 77 (105)
T 2gmg_A 62 VLLIKPAQCRKCGFVF 77 (105)
T ss_dssp EEEECCCBBTTTCCBC
T ss_pred EEEEECcChhhCcCee
Confidence 3344456899999999
No 192
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.69 E-value=10 Score=18.31 Aligned_cols=12 Identities=42% Similarity=0.966 Sum_probs=9.4
Q ss_pred EeeCCCCcEEeC
Q 036150 26 WSCKYCGKVKAG 37 (77)
Q Consensus 26 WkCkkCgkt~AG 37 (77)
+.|..|++.|.-
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2yti_A 13 YKCNECGKVFTQ 24 (46)
T ss_dssp TCCSSSCCCCSS
T ss_pred eECCCCCcccCC
Confidence 689999988753
No 193
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.65 E-value=12 Score=17.88 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=9.5
Q ss_pred EEeeCCCCcEEe
Q 036150 25 IWSCKYCGKVKA 36 (77)
Q Consensus 25 IWkCkkCgkt~A 36 (77)
-+.|..|++.|.
T Consensus 12 ~~~C~~C~k~f~ 23 (44)
T 2eou_A 12 TSECQECGKIFR 23 (44)
T ss_dssp CCCCTTTCCCCS
T ss_pred CeECCCCCcccC
Confidence 378999998875
No 194
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=28.61 E-value=43 Score=24.57 Aligned_cols=28 Identities=25% Similarity=0.449 Sum_probs=18.8
Q ss_pred eeeCCCCceeeE------EeE----EEEEeeCCCCcEE
Q 036150 8 LRRKRTKKYAVK------RKA----VGIWSCKYCGKVK 35 (77)
Q Consensus 8 ~~~~~CGK~~VK------R~A----VGIWkCkkCgkt~ 35 (77)
++||+||...+. |.| +=...|..||..|
T Consensus 269 ~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w 306 (309)
T 1pqv_S 269 FTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRW 306 (309)
T ss_pred ccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCce
Confidence 578999987653 212 2357888898865
No 195
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.14 E-value=14 Score=17.85 Aligned_cols=12 Identities=25% Similarity=0.706 Sum_probs=9.4
Q ss_pred EeeCCCCcEEeC
Q 036150 26 WSCKYCGKVKAG 37 (77)
Q Consensus 26 WkCkkCgkt~AG 37 (77)
+.|..|++.|.-
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2enh_A 13 YECDVCRKAFSH 24 (46)
T ss_dssp CBCTTTCCBCSS
T ss_pred cCCCCcCchhCC
Confidence 679999988753
No 196
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.11 E-value=12 Score=18.11 Aligned_cols=11 Identities=36% Similarity=0.748 Sum_probs=9.0
Q ss_pred EeeCCCCcEEe
Q 036150 26 WSCKYCGKVKA 36 (77)
Q Consensus 26 WkCkkCgkt~A 36 (77)
++|..|++.|.
T Consensus 13 ~~C~~C~k~F~ 23 (46)
T 2eom_A 13 HRCSDCGKFFL 23 (46)
T ss_dssp CCCSSSCCCCS
T ss_pred cCCCCCCCeeC
Confidence 68999998875
No 197
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=28.00 E-value=24 Score=21.27 Aligned_cols=10 Identities=40% Similarity=1.142 Sum_probs=8.4
Q ss_pred EEeeCCCCcE
Q 036150 25 IWSCKYCGKV 34 (77)
Q Consensus 25 IWkCkkCgkt 34 (77)
.|+|.+|++.
T Consensus 11 ~WkC~~C~k~ 20 (53)
T 2cr8_A 11 EWQCTECKKF 20 (53)
T ss_dssp CEECSSSCCE
T ss_pred eeeccccccc
Confidence 5999999864
No 198
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=27.86 E-value=28 Score=17.54 Aligned_cols=12 Identities=33% Similarity=0.739 Sum_probs=9.6
Q ss_pred EEeeCCCCcEEe
Q 036150 25 IWSCKYCGKVKA 36 (77)
Q Consensus 25 IWkCkkCgkt~A 36 (77)
.+.|..|++.|.
T Consensus 12 ~~~C~~C~k~f~ 23 (54)
T 2eps_A 12 PYICQSCGKGFS 23 (54)
T ss_dssp CEECSSSCCEES
T ss_pred CeECCCCCcccC
Confidence 478999998875
No 199
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.72 E-value=14 Score=17.79 Aligned_cols=11 Identities=36% Similarity=0.987 Sum_probs=9.1
Q ss_pred EeeCCCCcEEe
Q 036150 26 WSCKYCGKVKA 36 (77)
Q Consensus 26 WkCkkCgkt~A 36 (77)
+.|..|++.|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2ytq_A 13 YGCSECGKAFS 23 (46)
T ss_dssp CBCSSSCCBCS
T ss_pred cCCCccChhhC
Confidence 78999998775
No 200
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=27.59 E-value=25 Score=24.15 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=18.9
Q ss_pred eeeCCCCceeeE------E----eEEEEEeeCCCCcEE
Q 036150 8 LRRKRTKKYAVK------R----KAVGIWSCKYCGKVK 35 (77)
Q Consensus 8 ~~~~~CGK~~VK------R----~AVGIWkCkkCgkt~ 35 (77)
..||+||+.... | -.+-...|..||..|
T Consensus 138 ~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w 175 (178)
T 3po3_S 138 FTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRW 175 (178)
T ss_dssp SCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEE
T ss_pred cCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCee
Confidence 468888876542 1 135578888888876
No 201
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.28 E-value=14 Score=17.68 Aligned_cols=13 Identities=38% Similarity=0.945 Sum_probs=9.9
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eq4_A 12 LYNCKECGKSFSR 24 (46)
T ss_dssp CCCBTTTTBCCSC
T ss_pred CeECCCCCCccCc
Confidence 3789999988753
No 202
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=27.15 E-value=19 Score=17.21 Aligned_cols=11 Identities=36% Similarity=0.800 Sum_probs=9.0
Q ss_pred EeeCCCCcEEe
Q 036150 26 WSCKYCGKVKA 36 (77)
Q Consensus 26 WkCkkCgkt~A 36 (77)
++|..|++.|.
T Consensus 11 ~~C~~C~k~f~ 21 (45)
T 2epq_A 11 YSCPVCGLRFK 21 (45)
T ss_dssp SEETTTTEECS
T ss_pred CcCCCCCcccC
Confidence 67999998875
No 203
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=26.97 E-value=39 Score=19.37 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=20.5
Q ss_pred eeeeeeCCCCceeeEEeEEEEEeeC--CCCcEE
Q 036150 5 YRVLRRKRTKKYAVKRKAVGIWSCK--YCGKVK 35 (77)
Q Consensus 5 ~~~~~~~~CGK~~VKR~AVGIWkCk--kCgkt~ 35 (77)
..+|+||.|+..=.-.. |.=.|+ .|+..+
T Consensus 8 L~iL~CP~c~~~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 8 LEILACPACHAPLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp TTSCCCSSSCSCEEEET--TEEEECSSSCCCEE
T ss_pred HhheeCCCCCCcceecC--CEEEcCCcCCCcEE
Confidence 45789999998632222 777899 897653
No 204
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.88 E-value=15 Score=17.69 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=9.4
Q ss_pred EEeeCCCCcEEe
Q 036150 25 IWSCKYCGKVKA 36 (77)
Q Consensus 25 IWkCkkCgkt~A 36 (77)
-+.|..|++.|.
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2elz_A 12 PYKCEDCGKGYN 23 (46)
T ss_dssp SCBCSSSCCBCS
T ss_pred CeeCcccCchhC
Confidence 368999998875
No 205
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.69 E-value=14 Score=17.88 Aligned_cols=12 Identities=33% Similarity=0.720 Sum_probs=9.3
Q ss_pred EEeeCCCCcEEe
Q 036150 25 IWSCKYCGKVKA 36 (77)
Q Consensus 25 IWkCkkCgkt~A 36 (77)
-++|..|++.|.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2emz_A 12 PFKCNECGKGFG 23 (46)
T ss_dssp SCCCSSSCCCCS
T ss_pred CeECCCCCcccC
Confidence 378999988765
No 206
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=26.66 E-value=30 Score=18.30 Aligned_cols=12 Identities=33% Similarity=0.830 Sum_probs=10.4
Q ss_pred EEeeCCCCcEEe
Q 036150 25 IWSCKYCGKVKA 36 (77)
Q Consensus 25 IWkCkkCgkt~A 36 (77)
.+.|..|++.|.
T Consensus 47 ~~~C~~C~~~f~ 58 (86)
T 1x6h_A 47 AFVCSKCGKTFT 58 (86)
T ss_dssp CEECSSSCCEES
T ss_pred ceECCCCCChhC
Confidence 589999999885
No 207
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=26.43 E-value=34 Score=17.93 Aligned_cols=12 Identities=17% Similarity=0.584 Sum_probs=9.9
Q ss_pred EEeeCCCCcEEe
Q 036150 25 IWSCKYCGKVKA 36 (77)
Q Consensus 25 IWkCkkCgkt~A 36 (77)
-++|..|++.|.
T Consensus 14 ~~~C~~C~k~F~ 25 (62)
T 1vd4_A 14 SFKCPVCSSTFT 25 (62)
T ss_dssp EEECSSSCCEEE
T ss_pred CccCCCCCchhc
Confidence 478999999885
No 208
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=26.33 E-value=31 Score=18.15 Aligned_cols=13 Identities=23% Similarity=0.629 Sum_probs=10.6
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-++|..|++.|.-
T Consensus 45 ~~~C~~C~k~f~~ 57 (74)
T 2lce_A 45 PYRCNICGAQFNR 57 (74)
T ss_dssp SEECTTTCCEESC
T ss_pred CEECCCCCchhCC
Confidence 4899999998853
No 209
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=26.23 E-value=23 Score=23.38 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=18.4
Q ss_pred eEEEEEeeCCCCcEEeCccccc
Q 036150 21 KAVGIWSCKYCGKVKAGALNAA 42 (77)
Q Consensus 21 ~AVGIWkCkkCgkt~AGGAYtp 42 (77)
...-.-.|..|++.++++-|.|
T Consensus 66 ~~s~~~~C~nC~R~vaa~RFAp 87 (99)
T 3mhs_C 66 ESSQYIHCENCGRDVSANRLAA 87 (99)
T ss_dssp TTSCEEECTTTCCEEEGGGHHH
T ss_pred cCCCeEECCCCCCCchhhhhHH
Confidence 4556778999999999998876
No 210
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=26.22 E-value=31 Score=18.91 Aligned_cols=14 Identities=21% Similarity=0.522 Sum_probs=10.4
Q ss_pred EEEeeCCCCcEEeC
Q 036150 24 GIWSCKYCGKVKAG 37 (77)
Q Consensus 24 GIWkCkkCgkt~AG 37 (77)
..+.|.+||+.+.-
T Consensus 8 ~~~~C~~C~~~i~~ 21 (39)
T 2i5o_A 8 DQVPCEKCGSLVPV 21 (39)
T ss_dssp CEEECTTTCCEEEG
T ss_pred CCcccccccCcCCc
Confidence 35789999988763
No 211
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=26.22 E-value=31 Score=18.15 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=18.2
Q ss_pred eeeeCCCCceeeE-----E-----eEEEEEeeCCCCcEEe
Q 036150 7 VLRRKRTKKYAVK-----R-----KAVGIWSCKYCGKVKA 36 (77)
Q Consensus 7 ~~~~~~CGK~~VK-----R-----~AVGIWkCkkCgkt~A 36 (77)
...|+.|+|.-.. + ...-.++|..|++.|.
T Consensus 14 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~ 53 (72)
T 1x6e_A 14 PYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFS 53 (72)
T ss_dssp CEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEES
T ss_pred CccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccC
Confidence 3567777765211 0 1223589999999875
No 212
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.21 E-value=16 Score=17.45 Aligned_cols=12 Identities=33% Similarity=0.714 Sum_probs=9.4
Q ss_pred EEeeCCCCcEEe
Q 036150 25 IWSCKYCGKVKA 36 (77)
Q Consensus 25 IWkCkkCgkt~A 36 (77)
-+.|..|++.|.
T Consensus 12 ~~~C~~C~k~F~ 23 (47)
T 2epx_A 12 PYECIECGKAFI 23 (47)
T ss_dssp SBCCSSSCCCBS
T ss_pred CEECCccCchhC
Confidence 368999998875
No 213
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=26.00 E-value=21 Score=20.37 Aligned_cols=12 Identities=33% Similarity=0.814 Sum_probs=10.1
Q ss_pred EEeeCCCCcEEe
Q 036150 25 IWSCKYCGKVKA 36 (77)
Q Consensus 25 IWkCkkCgkt~A 36 (77)
+|.|..||++.-
T Consensus 3 ~y~C~~CGyvYd 14 (52)
T 1e8j_A 3 IYVCTVCGYEYD 14 (52)
T ss_dssp CEECSSSCCCCC
T ss_pred cEEeCCCCeEEc
Confidence 599999998854
No 214
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=25.93 E-value=30 Score=19.07 Aligned_cols=12 Identities=42% Similarity=0.656 Sum_probs=9.7
Q ss_pred EEeeCCCCcEEe
Q 036150 25 IWSCKYCGKVKA 36 (77)
Q Consensus 25 IWkCkkCgkt~A 36 (77)
-+.|..||+.|.
T Consensus 32 p~~C~~C~k~F~ 43 (60)
T 4gzn_C 32 PRSCPECGKCFR 43 (60)
T ss_dssp CEECTTTCCEES
T ss_pred CeECCCCCCCcC
Confidence 478889998875
No 215
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=25.90 E-value=32 Score=17.89 Aligned_cols=11 Identities=45% Similarity=1.050 Sum_probs=6.6
Q ss_pred EeeCCCCcEEe
Q 036150 26 WSCKYCGKVKA 36 (77)
Q Consensus 26 WkCkkCgkt~A 36 (77)
+.|..|++.|.
T Consensus 2 ~~C~~C~~~f~ 12 (82)
T 2kmk_A 2 FDCKICGKSFK 12 (82)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCCccccc
Confidence 45666666654
No 216
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=25.81 E-value=31 Score=20.05 Aligned_cols=12 Identities=25% Similarity=0.852 Sum_probs=10.1
Q ss_pred EEeeCCCCcEEe
Q 036150 25 IWSCKYCGKVKA 36 (77)
Q Consensus 25 IWkCkkCgkt~A 36 (77)
+|.|..||++.-
T Consensus 3 ~y~C~vCGyvYd 14 (54)
T 4rxn_A 3 KYTCTVCGYIYD 14 (54)
T ss_dssp CEEETTTCCEEC
T ss_pred ceECCCCCeEEC
Confidence 699999998864
No 217
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=25.71 E-value=31 Score=18.28 Aligned_cols=12 Identities=17% Similarity=0.429 Sum_probs=9.2
Q ss_pred EEeeCCCCcEEe
Q 036150 25 IWSCKYCGKVKA 36 (77)
Q Consensus 25 IWkCkkCgkt~A 36 (77)
-+.|..|++.|.
T Consensus 15 ~~~C~~C~k~f~ 26 (77)
T 2ct1_A 15 PYECYICHARFT 26 (77)
T ss_dssp SEECTTTCCEES
T ss_pred CeECCCcCchhC
Confidence 478888888875
No 218
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=25.53 E-value=17 Score=17.54 Aligned_cols=12 Identities=42% Similarity=0.958 Sum_probs=9.5
Q ss_pred EeeCCCCcEEeC
Q 036150 26 WSCKYCGKVKAG 37 (77)
Q Consensus 26 WkCkkCgkt~AG 37 (77)
+.|..|++.|.-
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2emk_A 13 YECKECGKAFSQ 24 (46)
T ss_dssp CBCSSSCCBCSC
T ss_pred eECCCCCchhCC
Confidence 689999988753
No 219
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=25.43 E-value=33 Score=17.12 Aligned_cols=12 Identities=17% Similarity=0.675 Sum_probs=10.1
Q ss_pred EEeeCCCCcEEe
Q 036150 25 IWSCKYCGKVKA 36 (77)
Q Consensus 25 IWkCkkCgkt~A 36 (77)
.+.|..|++.|.
T Consensus 30 ~~~C~~C~~~f~ 41 (60)
T 2adr_A 30 PYPCGLCNRAFT 41 (60)
T ss_dssp SEECTTTCCEES
T ss_pred CccCCCCCCccC
Confidence 588999999875
No 220
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.17 E-value=13 Score=17.90 Aligned_cols=11 Identities=36% Similarity=1.002 Sum_probs=8.9
Q ss_pred EeeCCCCcEEe
Q 036150 26 WSCKYCGKVKA 36 (77)
Q Consensus 26 WkCkkCgkt~A 36 (77)
+.|..|++.|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2eq2_A 13 YQCNECGKAFS 23 (46)
T ss_dssp SSCCSSCCCCS
T ss_pred eECCCCCcccC
Confidence 67888988775
No 221
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.03 E-value=15 Score=17.69 Aligned_cols=11 Identities=36% Similarity=0.785 Sum_probs=8.7
Q ss_pred EeeCCCCcEEe
Q 036150 26 WSCKYCGKVKA 36 (77)
Q Consensus 26 WkCkkCgkt~A 36 (77)
..|..|++.|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2eoh_A 13 YECKECRKTFI 23 (46)
T ss_dssp CCCSSSCCCCS
T ss_pred cCCCCcCchhC
Confidence 67888988775
No 222
>3nrl_A Uncharacterized protein rumgna_01417; beta protein, structural genomics, PSI-2, protein structure initiative; 1.90A {Ruminococcus gnavus}
Probab=24.94 E-value=17 Score=23.43 Aligned_cols=18 Identities=22% Similarity=0.326 Sum_probs=16.0
Q ss_pred EeeCCCCcEEeCcccccc
Q 036150 26 WSCKYCGKVKAGALNAAT 43 (77)
Q Consensus 26 WkCkkCgkt~AGGAYtp~ 43 (77)
-+|..|-.++.||.|.|.
T Consensus 31 lHCGE~feV~v~~~Wipt 48 (81)
T 3nrl_A 31 LHCGECFDVKVKDVWVPV 48 (81)
T ss_dssp CCTTCEEEEEETTEEEEE
T ss_pred cccccEEEEEECCEEEEE
Confidence 479999999999999984
No 223
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.65 E-value=18 Score=17.37 Aligned_cols=12 Identities=33% Similarity=0.758 Sum_probs=9.4
Q ss_pred EEeeCCCCcEEe
Q 036150 25 IWSCKYCGKVKA 36 (77)
Q Consensus 25 IWkCkkCgkt~A 36 (77)
-+.|..|++.|.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2epz_A 12 PFDCIDCGKAFS 23 (46)
T ss_dssp SBCCTTTCCCBS
T ss_pred CeECCCCCceeC
Confidence 378999998875
No 224
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=24.50 E-value=15 Score=21.76 Aligned_cols=14 Identities=21% Similarity=0.570 Sum_probs=8.7
Q ss_pred EEEeeCCCCcEEeC
Q 036150 24 GIWSCKYCGKVKAG 37 (77)
Q Consensus 24 GIWkCkkCgkt~AG 37 (77)
-|.+|-+||++|.-
T Consensus 2 ~iY~C~rCg~~fs~ 15 (48)
T 4ayb_P 2 AVYRCGKCWKTFTD 15 (48)
T ss_dssp ---CCCCTTTTCCC
T ss_pred cEEEeeccCCCccH
Confidence 37788888888753
No 225
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=24.10 E-value=31 Score=20.09 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=17.9
Q ss_pred eeCCCCce-e-eEEeEEEEEeeCCCCcEEeCcc
Q 036150 9 RRKRTKKY-A-VKRKAVGIWSCKYCGKVKAGAL 39 (77)
Q Consensus 9 ~~~~CGK~-~-VKR~AVGIWkCkkCgkt~AGGA 39 (77)
.|..|++. . ++|. =+|+.||+.|-+.-
T Consensus 13 ~C~~C~~~F~~~~Rr----HHCR~CG~v~C~~C 41 (73)
T 1vfy_A 13 ACMICSKKFSLLNRK----HHCRSCGGVFCQEH 41 (73)
T ss_dssp BCTTTCCBCBTTBCC----EECTTTCCEECGGG
T ss_pred cccCCCCccCCcccc----ccCCCCCEEEcccc
Confidence 46667764 1 2232 58999999987764
No 226
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.99 E-value=14 Score=17.71 Aligned_cols=11 Identities=36% Similarity=0.999 Sum_probs=8.9
Q ss_pred EeeCCCCcEEe
Q 036150 26 WSCKYCGKVKA 36 (77)
Q Consensus 26 WkCkkCgkt~A 36 (77)
+.|..|++.|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2ytr_A 13 YKCNECGKAFS 23 (46)
T ss_dssp TCCTTTCCCCS
T ss_pred cCCCCCCCccC
Confidence 67999998875
No 227
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=23.96 E-value=41 Score=20.26 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=24.2
Q ss_pred eeCCCCceee-----EEeEEEEEe-------eCCCCcEEeCccccc
Q 036150 9 RRKRTKKYAV-----KRKAVGIWS-------CKYCGKVKAGALNAA 42 (77)
Q Consensus 9 ~~~~CGK~~V-----KR~AVGIWk-------CkkCgkt~AGGAYtp 42 (77)
+|..|++.-. -+..-..|+ |..|++.+.|..|.+
T Consensus 65 ~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~ 110 (126)
T 2xqn_T 65 VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMP 110 (126)
T ss_dssp BCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTTTCCBCTTSEEEE
T ss_pred cCcccCCcCCcCceEEECCCCEeeCCCCCcCcCCCCCccCCCeeEe
Confidence 5777777533 334457898 888999988877755
No 228
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.78 E-value=14 Score=17.83 Aligned_cols=11 Identities=36% Similarity=0.948 Sum_probs=8.8
Q ss_pred EeeCCCCcEEe
Q 036150 26 WSCKYCGKVKA 36 (77)
Q Consensus 26 WkCkkCgkt~A 36 (77)
+.|..|++.|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2ytt_A 13 YQCSECGKSFS 23 (46)
T ss_dssp TCCSSSCCCCS
T ss_pred eeCCCCCcccC
Confidence 67888988775
No 229
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=23.67 E-value=34 Score=25.48 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=18.4
Q ss_pred eeCCCCceeeEEeEEE-----EEeeCCCCcE
Q 036150 9 RRKRTKKYAVKRKAVG-----IWSCKYCGKV 34 (77)
Q Consensus 9 ~~~~CGK~~VKR~AVG-----IWkCkkCgkt 34 (77)
.||+||. .|+|+-.| .|-|..|.|-
T Consensus 253 pC~~CGt-~I~~~~~g~~gRsTyfCp~~~~~ 282 (287)
T 3w0f_A 253 NCDQCHS-KITVCRFGENSRMTYFCPHCQKH 282 (287)
T ss_dssp BCTTTCC-BCEEECSSTTCCCEEECTTTSCC
T ss_pred CCCCCCC-EEEEEEecCCCCCEEECCCcccc
Confidence 6888986 45565544 8999999763
No 230
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.46 E-value=43 Score=16.98 Aligned_cols=14 Identities=21% Similarity=0.441 Sum_probs=11.5
Q ss_pred EEeeCCCCcEEeCc
Q 036150 25 IWSCKYCGKVKAGA 38 (77)
Q Consensus 25 IWkCkkCgkt~AGG 38 (77)
-+.|..|++.|.--
T Consensus 18 ~~~C~~C~k~f~~~ 31 (73)
T 2ctu_A 18 SQKCSKCGIIFIRR 31 (73)
T ss_dssp EEECSSSCCEEECC
T ss_pred CeeCCcccchhCCH
Confidence 48999999998753
No 231
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=23.46 E-value=19 Score=23.76 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=15.9
Q ss_pred eeeCCCCceeeEEeEEEEEeeCCCCcE
Q 036150 8 LRRKRTKKYAVKRKAVGIWSCKYCGKV 34 (77)
Q Consensus 8 ~~~~~CGK~~VKR~AVGIWkCkkCgkt 34 (77)
..|++||+... -.-=+.|.+||+.
T Consensus 17 ~lCrRCG~~sf---H~qK~~CgkCGYp 40 (97)
T 2zkr_2 17 TLCRRCGSKAY---HLQKSTCGKCGYP 40 (97)
T ss_dssp ECCTTTCSSCE---ETTSCCBTTTCTT
T ss_pred CcCCCCCCccC---cCccccCcccCCc
Confidence 35788888765 1224578888863
No 232
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.45 E-value=17 Score=17.42 Aligned_cols=13 Identities=38% Similarity=0.935 Sum_probs=9.8
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-+.|..|++.|.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eoq_A 12 PFKCDICGKSFCG 24 (46)
T ss_dssp SCCCSSSCCCCSS
T ss_pred CcCCCcCCchhCC
Confidence 3689999988753
No 233
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=23.21 E-value=22 Score=17.91 Aligned_cols=9 Identities=44% Similarity=1.217 Sum_probs=6.7
Q ss_pred eeCCCCcEE
Q 036150 27 SCKYCGKVK 35 (77)
Q Consensus 27 kCkkCgkt~ 35 (77)
+|..|++++
T Consensus 5 ~C~~C~k~V 13 (31)
T 1zfo_A 5 NCARCGKIV 13 (31)
T ss_dssp BCSSSCSBC
T ss_pred cCCccCCEE
Confidence 577888776
No 234
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.77 E-value=34 Score=20.36 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=19.1
Q ss_pred eeeeCCCCce--eeEEeEEEEEeeCCCCcEEeCcc
Q 036150 7 VLRRKRTKKY--AVKRKAVGIWSCKYCGKVKAGAL 39 (77)
Q Consensus 7 ~~~~~~CGK~--~VKR~AVGIWkCkkCgkt~AGGA 39 (77)
+..|..|++. -++|+ =+|+.||+.|-+.-
T Consensus 14 ~~~C~~C~~~F~~~~Rr----HHCR~CG~vfC~~C 44 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKR----RSCSNCGNSFCSRC 44 (84)
T ss_dssp CSSCSSSCCCCCSSSCC----EECSSSCCEECTTT
T ss_pred CCcCcCcCCccccchhh----hhhcCCCcEEChhh
Confidence 3456777775 23333 38999999988764
No 235
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=22.64 E-value=20 Score=15.58 Aligned_cols=11 Identities=36% Similarity=0.788 Sum_probs=7.8
Q ss_pred EeeC--CCCcEEe
Q 036150 26 WSCK--YCGKVKA 36 (77)
Q Consensus 26 WkCk--kCgkt~A 36 (77)
+.|. .|++.|.
T Consensus 4 ~~C~~~~C~k~f~ 16 (32)
T 1zfd_A 4 YSCDHPGCDKAFV 16 (32)
T ss_dssp BCCCCTTCCCCBS
T ss_pred CcCcCCCCCCccC
Confidence 4677 7888765
No 236
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.46 E-value=17 Score=17.60 Aligned_cols=12 Identities=33% Similarity=0.767 Sum_probs=9.2
Q ss_pred EEeeCCCCcEEe
Q 036150 25 IWSCKYCGKVKA 36 (77)
Q Consensus 25 IWkCkkCgkt~A 36 (77)
-+.|..|++.|.
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2ytm_A 12 PYKCMECGKAFG 23 (46)
T ss_dssp SSSBTTTTBCCS
T ss_pred CcCCCCCCchhC
Confidence 367889998775
No 237
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=22.31 E-value=44 Score=15.08 Aligned_cols=11 Identities=27% Similarity=0.727 Sum_probs=8.7
Q ss_pred EeeC--CCCcEEe
Q 036150 26 WSCK--YCGKVKA 36 (77)
Q Consensus 26 WkCk--kCgkt~A 36 (77)
+.|. .|++.|.
T Consensus 7 ~~C~~~~C~k~f~ 19 (38)
T 1bhi_A 7 FLCTAPGCGQRFT 19 (38)
T ss_dssp EECCCTTTCCEES
T ss_pred eECCCCCCCcccC
Confidence 6788 6998875
No 238
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.28 E-value=40 Score=17.82 Aligned_cols=14 Identities=29% Similarity=0.622 Sum_probs=10.8
Q ss_pred EEEeeCCCCcEEeC
Q 036150 24 GIWSCKYCGKVKAG 37 (77)
Q Consensus 24 GIWkCkkCgkt~AG 37 (77)
.-+.|..|++.|.-
T Consensus 45 ~~~~C~~C~~~f~~ 58 (77)
T 2cot_A 45 KPYKCDECGKAFIQ 58 (77)
T ss_dssp CSEECSSSCCEESS
T ss_pred cCeeCCCCCCccCC
Confidence 34889999998753
No 239
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=22.26 E-value=24 Score=18.29 Aligned_cols=11 Identities=45% Similarity=1.208 Sum_probs=8.7
Q ss_pred EEEeeCCCCcE
Q 036150 24 GIWSCKYCGKV 34 (77)
Q Consensus 24 GIWkCkkCgkt 34 (77)
|=|.|.+|+..
T Consensus 5 gDW~C~~C~~~ 15 (33)
T 2k1p_A 5 NDWQCKTCSNV 15 (33)
T ss_dssp SSCBCSSSCCB
T ss_pred CCcccCCCCCc
Confidence 66999999754
No 240
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=22.20 E-value=32 Score=24.05 Aligned_cols=13 Identities=0% Similarity=-0.064 Sum_probs=9.8
Q ss_pred eeeeeCCCCceee
Q 036150 6 RVLRRKRTKKYAV 18 (77)
Q Consensus 6 ~~~~~~~CGK~~V 18 (77)
.+++||+||+.=|
T Consensus 221 ~Iv~Cp~CgRIL~ 233 (256)
T 3na7_A 221 DMITCPYCGRILY 233 (256)
T ss_dssp SCEECTTTCCEEE
T ss_pred CEEECCCCCeeEE
Confidence 3678888888765
No 241
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=22.19 E-value=27 Score=21.27 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=17.1
Q ss_pred eeeCCCCceeeEEeEEEE--EeeCCCCcEEeCcc
Q 036150 8 LRRKRTKKYAVKRKAVGI--WSCKYCGKVKAGAL 39 (77)
Q Consensus 8 ~~~~~CGK~~VKR~AVGI--WkCkkCgkt~AGGA 39 (77)
.||..|+|. +|+ .+| .||.+|-+--
T Consensus 16 ~rC~~C~kk------vgl~~f~C-rCg~~FC~~H 42 (64)
T 1wg2_A 16 NRCFSCNKK------VGVMGFKC-KCGSTFCGSH 42 (64)
T ss_dssp CSCTTTCCC------CTTSCEEC-TTSCEECSSS
T ss_pred CcChhhCCc------ccccCeEe-ecCCEecccC
Confidence 467777765 232 799 7999987643
No 242
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=21.89 E-value=36 Score=20.22 Aligned_cols=28 Identities=21% Similarity=0.478 Sum_probs=18.5
Q ss_pred eeeCCCCcee--eEEeEEEEEeeCCCCcEEeCcc
Q 036150 8 LRRKRTKKYA--VKRKAVGIWSCKYCGKVKAGAL 39 (77)
Q Consensus 8 ~~~~~CGK~~--VKR~AVGIWkCkkCgkt~AGGA 39 (77)
-.|..|++.= ++|. =+|+.||+.|-+.-
T Consensus 20 ~~C~~C~~~Fs~~~Rr----HHCR~CG~v~C~~C 49 (82)
T 2yw8_A 20 THCRQCEKEFSISRRK----HHCRNCGHIFCNTC 49 (82)
T ss_dssp CBCTTTCCBCBTTBCC----EECTTTCCEECSGG
T ss_pred CcccCcCCcccCcccc----ccCCCCCCEEChHH
Confidence 3566777651 2222 48999999988764
No 243
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=21.62 E-value=19 Score=17.19 Aligned_cols=13 Identities=23% Similarity=0.825 Sum_probs=9.6
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
-.+|..|++.|.-
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2em0_A 12 TWKCRECDMCFSQ 24 (46)
T ss_dssp CCCCSSSCCCCSS
T ss_pred CeECCCCCcccCC
Confidence 3689999987753
No 244
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=21.58 E-value=44 Score=19.44 Aligned_cols=32 Identities=13% Similarity=0.361 Sum_probs=22.0
Q ss_pred eeeeeeeCC--CCcee---eEEeE-EEEEeeCCCCcEE
Q 036150 4 YYRVLRRKR--TKKYA---VKRKA-VGIWSCKYCGKVK 35 (77)
Q Consensus 4 ~~~~~~~~~--CGK~~---VKR~A-VGIWkCkkCgkt~ 35 (77)
-|..+||++ |+-.- ++-.- -..|.|.=|+..-
T Consensus 6 ~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N 43 (59)
T 2yrc_A 6 SGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRN 43 (59)
T ss_dssp CCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEE
T ss_pred CCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcC
Confidence 467789988 97662 33332 3499999998763
No 245
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=21.35 E-value=82 Score=17.51 Aligned_cols=36 Identities=11% Similarity=0.048 Sum_probs=24.7
Q ss_pred eeeCCCCceee----EEeEEEEEe-----eCCCCcEEeCcccccc
Q 036150 8 LRRKRTKKYAV----KRKAVGIWS-----CKYCGKVKAGALNAAT 43 (77)
Q Consensus 8 ~~~~~CGK~~V----KR~AVGIWk-----CkkCgkt~AGGAYtp~ 43 (77)
-+|..|++.-. -+..-..|| |..|++.+.++.|...
T Consensus 8 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~ 52 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIH 52 (81)
T ss_dssp CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEE
T ss_pred CcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEee
Confidence 46788888532 222335785 8999999999877653
No 246
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=21.30 E-value=42 Score=18.20 Aligned_cols=11 Identities=18% Similarity=0.715 Sum_probs=6.9
Q ss_pred EeeCCCCcEEe
Q 036150 26 WSCKYCGKVKA 36 (77)
Q Consensus 26 WkCkkCgkt~A 36 (77)
+.|..|++.|.
T Consensus 4 ~~C~~C~k~f~ 14 (88)
T 1llm_C 4 FQCRICMRNFS 14 (88)
T ss_dssp EECTTTCCEES
T ss_pred CcCCCCCCccC
Confidence 56666666664
No 247
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=21.18 E-value=47 Score=15.15 Aligned_cols=12 Identities=42% Similarity=0.742 Sum_probs=9.0
Q ss_pred EEeeC--CCCcEEe
Q 036150 25 IWSCK--YCGKVKA 36 (77)
Q Consensus 25 IWkCk--kCgkt~A 36 (77)
-+.|. .|++.|.
T Consensus 8 ~~~C~~~~C~k~f~ 21 (37)
T 1va1_A 8 QHICHIQGCGKVYG 21 (37)
T ss_dssp CEECCSTTCCCEES
T ss_pred CCCCCCCCCCCccC
Confidence 36787 5999885
No 248
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=20.68 E-value=69 Score=20.75 Aligned_cols=12 Identities=25% Similarity=0.645 Sum_probs=9.5
Q ss_pred EEEeeCCCCcEE
Q 036150 24 GIWSCKYCGKVK 35 (77)
Q Consensus 24 GIWkCkkCgkt~ 35 (77)
=++.|..||.+.
T Consensus 88 vv~tCl~Cg~~k 99 (123)
T 2k3r_A 88 IVVKCLECGHIM 99 (123)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEECCCCCCEE
Confidence 488999999763
No 249
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=20.65 E-value=72 Score=20.48 Aligned_cols=12 Identities=25% Similarity=0.664 Sum_probs=9.5
Q ss_pred EEEeeCCCCcEE
Q 036150 24 GIWSCKYCGKVK 35 (77)
Q Consensus 24 GIWkCkkCgkt~ 35 (77)
=++.|..||.+.
T Consensus 93 vv~tCl~Cg~~k 104 (120)
T 1x0t_A 93 VVITCLECGYIM 104 (120)
T ss_dssp EEEEETTTCCEE
T ss_pred EEEECCCCCCEE
Confidence 488999999763
No 250
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.59 E-value=45 Score=18.81 Aligned_cols=13 Identities=23% Similarity=0.547 Sum_probs=10.5
Q ss_pred EEeeCCCCcEEeC
Q 036150 25 IWSCKYCGKVKAG 37 (77)
Q Consensus 25 IWkCkkCgkt~AG 37 (77)
.+.|..|++.|.-
T Consensus 19 ~~~C~~C~k~f~~ 31 (115)
T 2dmi_A 19 KFRCKDCSAAYDT 31 (115)
T ss_dssp SEEBSSSSCEESS
T ss_pred CEECCccCchhcC
Confidence 4889999998863
No 251
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=20.45 E-value=46 Score=17.67 Aligned_cols=13 Identities=31% Similarity=0.782 Sum_probs=9.6
Q ss_pred EEEeeCCCCcEEe
Q 036150 24 GIWSCKYCGKVKA 36 (77)
Q Consensus 24 GIWkCkkCgkt~A 36 (77)
..+.|..|++.|.
T Consensus 61 ~~~~C~~C~~~f~ 73 (90)
T 1a1h_A 61 KPFACDICGRKFA 73 (90)
T ss_dssp CCEECTTTCCEES
T ss_pred CCccCCCCCchhC
Confidence 3578888888775
No 252
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=20.44 E-value=54 Score=21.65 Aligned_cols=17 Identities=24% Similarity=0.673 Sum_probs=13.2
Q ss_pred EEeeCCCCcEEeCccccc
Q 036150 25 IWSCKYCGKVKAGALNAA 42 (77)
Q Consensus 25 IWkCkkCgkt~AGGAYtp 42 (77)
+.+|.+||.-|-|- |.|
T Consensus 51 ~FkCP~CgEEFyG~-~Lp 67 (95)
T 2k5c_A 51 VFKCPVCGEEFYGK-TLP 67 (95)
T ss_dssp EEECTTTCCEEETT-SSC
T ss_pred hhcCCCccHHHhcc-cCC
Confidence 67999999999864 444
No 253
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=20.43 E-value=45 Score=17.67 Aligned_cols=13 Identities=15% Similarity=0.598 Sum_probs=9.6
Q ss_pred EEEeeCCCCcEEe
Q 036150 24 GIWSCKYCGKVKA 36 (77)
Q Consensus 24 GIWkCkkCgkt~A 36 (77)
..+.|..|++.|.
T Consensus 64 ~~~~C~~C~~~f~ 76 (89)
T 2wbs_A 64 RPFQCQKCDRAFS 76 (89)
T ss_dssp CCEECSSSSCEES
T ss_pred CCccCCCCCcccC
Confidence 3478888888774
No 254
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=20.42 E-value=40 Score=20.09 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=19.3
Q ss_pred eeeeCCCCcee--eEEeEEEEEeeCCCCcEEeCcc
Q 036150 7 VLRRKRTKKYA--VKRKAVGIWSCKYCGKVKAGAL 39 (77)
Q Consensus 7 ~~~~~~CGK~~--VKR~AVGIWkCkkCgkt~AGGA 39 (77)
+..|..|++.= ++|+ =+|+.||+.|-+.-
T Consensus 21 ~~~C~~C~~~Fs~~~Rr----HHCR~CG~v~C~~C 51 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRR----HHCRNCGYVLCGDC 51 (84)
T ss_dssp CCBCTTTCCBCCTTSCC----EECTTTCCEECTGG
T ss_pred CCCCcCcCCccccchhc----ccccCCCcEEChHH
Confidence 34567777761 3332 48999999987764
No 255
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=20.25 E-value=64 Score=21.42 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=25.1
Q ss_pred eeeCCCCceeeEEeEEEEEeeCCCCcEEeCcccccc
Q 036150 8 LRRKRTKKYAVKRKAVGIWSCKYCGKVKAGALNAAT 43 (77)
Q Consensus 8 ~~~~~CGK~~VKR~AVGIWkCkkCgkt~AGGAYtp~ 43 (77)
+.||.|+..-. +.. |..+|..|.+-+.=-|+=|+
T Consensus 33 ~~CP~Cq~eL~-~~g-~~~hC~~C~~~f~~~a~CPd 66 (101)
T 2jne_A 33 LHCPQCQHVLD-QDN-GHARCRSCGEFIEMKALCPD 66 (101)
T ss_dssp CBCSSSCSBEE-EET-TEEEETTTCCEEEEEEECTT
T ss_pred ccCccCCCcce-ecC-CEEECccccchhhccccCcc
Confidence 56899998744 443 58889999998776666664
No 256
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=20.21 E-value=31 Score=25.58 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=17.1
Q ss_pred eeeCCCCce--eeE-EeEEEEEeeCCCCc
Q 036150 8 LRRKRTKKY--AVK-RKAVGIWSCKYCGK 33 (77)
Q Consensus 8 ~~~~~CGK~--~VK-R~AVGIWkCkkCgk 33 (77)
-.||-|+.. ++. ...-|+|+|-.||+
T Consensus 35 ~~CPfh~ektpSf~V~~~k~~~~CFgCg~ 63 (407)
T 2au3_A 35 TNCPFHPDDTPSFYVSPSKQIFKCFGCGV 63 (407)
T ss_dssp ECCSSSCCSSCCEEEETTTTEEEETTTCC
T ss_pred eeCcCCCCCCCeEEEECCCCEEEECCCCC
Confidence 468888633 221 22458999999994
No 257
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=20.14 E-value=7.5 Score=24.12 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=22.1
Q ss_pred eeeeeeeCCCCceeeEEeEEEEEeeCCCCc
Q 036150 4 YYRVLRRKRTKKYAVKRKAVGIWSCKYCGK 33 (77)
Q Consensus 4 ~~~~~~~~~CGK~~VKR~AVGIWkCkkCgk 33 (77)
|-.+.-|.+||..---|...=||.|+-|-+
T Consensus 30 yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 30 YCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp TTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred ccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 445666788887765588888999987754
No 258
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.07 E-value=65 Score=17.75 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=23.4
Q ss_pred eeeCCCCceee----EEeEEEEEe-----eCCCCcEEeCccccc
Q 036150 8 LRRKRTKKYAV----KRKAVGIWS-----CKYCGKVKAGALNAA 42 (77)
Q Consensus 8 ~~~~~CGK~~V----KR~AVGIWk-----CkkCgkt~AGGAYtp 42 (77)
-+|..|++.-. -...--.|| |..|++.+.++.|..
T Consensus 10 ~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 53 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAE 53 (76)
T ss_dssp CBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEE
T ss_pred CCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEe
Confidence 46788887532 112224786 889999999887764
Done!