Query 036154
Match_columns 193
No_of_seqs 211 out of 1063
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 09:59:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036154.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036154hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00018 AP2 DNA-binding domain 99.8 5.1E-21 1.1E-25 132.4 7.7 61 119-179 1-61 (61)
2 smart00380 AP2 DNA-binding dom 99.8 3E-20 6.4E-25 130.2 8.3 63 120-182 1-63 (64)
3 PHA00280 putative NHN endonucl 99.4 2.5E-13 5.3E-18 107.2 7.3 56 115-173 63-119 (121)
4 PF00847 AP2: AP2 domain; Int 99.2 5.3E-11 1.2E-15 80.3 6.0 52 119-170 1-56 (56)
5 PF14657 Integrase_AP2: AP2-li 86.2 3.3 7.1E-05 26.8 5.6 38 131-168 1-42 (46)
6 cd00801 INT_P4 Bacteriophage P 64.2 16 0.00035 31.2 5.3 39 130-168 10-50 (357)
7 PHA02601 int integrase; Provis 63.0 12 0.00027 32.3 4.4 44 123-167 2-46 (333)
8 PF08846 DUF1816: Domain of un 62.8 16 0.00034 26.4 4.1 39 131-169 9-47 (68)
9 PF05036 SPOR: Sporulation rel 53.8 17 0.00038 24.2 3.1 29 141-170 42-70 (76)
10 PF08471 Ribonuc_red_2_N: Clas 53.5 15 0.00033 28.1 2.9 21 147-167 70-90 (93)
11 PF10729 CedA: Cell division a 48.6 43 0.00094 24.6 4.5 40 116-158 28-67 (80)
12 PRK09692 integrase; Provisiona 44.6 70 0.0015 28.9 6.3 44 124-167 33-82 (413)
13 PF13356 DUF4102: Domain of un 42.1 76 0.0016 22.8 5.1 43 125-167 28-74 (89)
14 PF14112 DUF4284: Domain of un 38.6 20 0.00044 27.9 1.7 16 143-158 2-17 (122)
15 PRK10113 cell division modulat 28.4 47 0.001 24.4 2.0 40 116-158 28-67 (80)
16 PF14032 PknH_C: PknH-like ext 24.0 1.4E+02 0.0031 23.8 4.3 23 146-168 86-108 (189)
17 PF00626 Gelsolin: Gelsolin re 22.6 1.1E+02 0.0024 20.4 3.0 34 134-167 20-53 (76)
18 PF00352 TBP: Transcription fa 21.9 3E+02 0.0065 19.7 5.3 46 119-167 36-82 (86)
19 COG0197 RplP Ribosomal protein 21.9 1.3E+02 0.0028 24.8 3.6 37 131-170 95-131 (146)
20 PRK10927 essential cell divisi 21.3 1.4E+02 0.003 27.6 4.1 34 132-165 273-306 (319)
No 1
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=99.84 E-value=5.1e-21 Score=132.41 Aligned_cols=61 Identities=66% Similarity=1.170 Sum_probs=57.5
Q ss_pred CceeeEEECCCCcEEEEEecCCCCeEeecCCCCCHHHHHHHHHHHHHHhhCCCCCCCCCCC
Q 036154 119 KKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFATP 179 (193)
Q Consensus 119 S~yRGVr~r~~GkW~A~I~~~~~~kri~LGtfdT~EeAA~AYD~Aa~~~~G~~A~~NFp~~ 179 (193)
|+|+||+++++|+|+|+|+++..++++|||+|+|+||||.|||.+++.++|.++.+|||.+
T Consensus 1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~ 61 (61)
T cd00018 1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61 (61)
T ss_pred CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence 6899998888899999999976699999999999999999999999999999999999964
No 2
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=99.82 E-value=3e-20 Score=130.15 Aligned_cols=63 Identities=62% Similarity=1.077 Sum_probs=59.3
Q ss_pred ceeeEEECCCCcEEEEEecCCCCeEeecCCCCCHHHHHHHHHHHHHHhhCCCCCCCCCCCCCC
Q 036154 120 KFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFATPPPK 182 (193)
Q Consensus 120 ~yRGVr~r~~GkW~A~I~~~~~~kri~LGtfdT~EeAA~AYD~Aa~~~~G~~A~~NFp~~~~~ 182 (193)
+|+||+++++|+|+|+|+++..++.+|||+|+|+||||.|||.+++.++|.++.+|||.+.+.
T Consensus 1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~ 63 (64)
T smart00380 1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD 63 (64)
T ss_pred CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence 599998888999999999998999999999999999999999999999999999999987653
No 3
>PHA00280 putative NHN endonuclease
Probab=99.44 E-value=2.5e-13 Score=107.25 Aligned_cols=56 Identities=16% Similarity=0.255 Sum_probs=51.5
Q ss_pred CCCCCceeeE-EECCCCcEEEEEecCCCCeEeecCCCCCHHHHHHHHHHHHHHhhCCCCC
Q 036154 115 QPAGKKFRGV-RQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDAL 173 (193)
Q Consensus 115 ~~~~S~yRGV-r~r~~GkW~A~I~~~~~~kri~LGtfdT~EeAA~AYD~Aa~~~~G~~A~ 173 (193)
+.++|+|+|| |....|||+|+|.. .|++++||.|+++|+|+.||+ ++.+|||++|.
T Consensus 63 ~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~ 119 (121)
T PHA00280 63 KSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR 119 (121)
T ss_pred CCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence 5789999999 68889999999998 999999999999999999997 77889999884
No 4
>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes. Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.
Probab=99.18 E-value=5.3e-11 Score=80.27 Aligned_cols=52 Identities=31% Similarity=0.480 Sum_probs=45.7
Q ss_pred CceeeE-EECCCCcEEEEEecCCC---CeEeecCCCCCHHHHHHHHHHHHHHhhCC
Q 036154 119 KKFRGV-RQRPWGKWAAEIRDPLR---RVRLWLGTYDTAEEAAMVYDNAAIQLRGP 170 (193)
Q Consensus 119 S~yRGV-r~r~~GkW~A~I~~~~~---~kri~LGtfdT~EeAA~AYD~Aa~~~~G~ 170 (193)
|+|+|| +.+..++|.|+|+++.. ++.++||.|++++||+.||+.++..++|+
T Consensus 1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e 56 (56)
T PF00847_consen 1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE 56 (56)
T ss_dssp SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence 689999 57889999999998432 49999999999999999999999999874
No 5
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=86.22 E-value=3.3 Score=26.83 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=30.1
Q ss_pred cEEEEE--ecCCCC--eEeecCCCCCHHHHHHHHHHHHHHhh
Q 036154 131 KWAAEI--RDPLRR--VRLWLGTYDTAEEAAMVYDNAAIQLR 168 (193)
Q Consensus 131 kW~A~I--~~~~~~--kri~LGtfdT~EeAA~AYD~Aa~~~~ 168 (193)
+|...| .++..| ++++-+.|.|..||..+...+...+.
T Consensus 1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~ 42 (46)
T PF14657_consen 1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE 42 (46)
T ss_pred CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence 588888 355444 77899999999999999988776654
No 6
>cd00801 INT_P4 Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. They share the same fold in their catalytic domain and the overall reaction mechanism with the superfamily of DNA breaking-rejoining enzymes. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes.
Probab=64.23 E-value=16 Score=31.16 Aligned_cols=39 Identities=33% Similarity=0.385 Sum_probs=29.5
Q ss_pred CcEEEEEecCCCCeEeecCCCC--CHHHHHHHHHHHHHHhh
Q 036154 130 GKWAAEIRDPLRRVRLWLGTYD--TAEEAAMVYDNAAIQLR 168 (193)
Q Consensus 130 GkW~A~I~~~~~~kri~LGtfd--T~EeAA~AYD~Aa~~~~ 168 (193)
+.|..+++..+...++.||+|+ +.++|..........+.
T Consensus 10 ~~~~~~~~~~g~~~~~~~g~~~~~~~~~A~~~~~~~~~~~~ 50 (357)
T cd00801 10 KSWRFRYRLAGKRKRLTLGSYPAVSLAEAREKADEARALLA 50 (357)
T ss_pred EEEEEEeccCCceeEEeCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 4699999987667789999995 77787777766655553
No 7
>PHA02601 int integrase; Provisional
Probab=63.05 E-value=12 Score=32.32 Aligned_cols=44 Identities=25% Similarity=0.305 Sum_probs=29.6
Q ss_pred eEEECCCCcEEEEEecC-CCCeEeecCCCCCHHHHHHHHHHHHHHh
Q 036154 123 GVRQRPWGKWAAEIRDP-LRRVRLWLGTYDTAEEAAMVYDNAAIQL 167 (193)
Q Consensus 123 GVr~r~~GkW~A~I~~~-~~~kri~LGtfdT~EeAA~AYD~Aa~~~ 167 (193)
+|++.+.|+|.++++.. ..|+++. .+|.|..||....+.....+
T Consensus 2 ~~~~~~~g~w~~~~~~~~~~g~r~~-~~f~tk~eA~~~~~~~~~~~ 46 (333)
T PHA02601 2 AVRKLKDGKWLCEIYPNGRDGKRIR-KRFATKGEALAFENYTMAEV 46 (333)
T ss_pred ceEEcCCCCEEEEEEECCCCCchhh-hhhcCHHHHHHHHHHHHHhc
Confidence 56777889999999852 2355544 36999988876555544433
No 8
>PF08846 DUF1816: Domain of unknown function (DUF1816); InterPro: IPR014945 Q4C9H3 from SWISSPROT is associated with the IPR008213 from INTERPRO domain suggesting this protein could have a role in phycobilisomes.
Probab=62.77 E-value=16 Score=26.44 Aligned_cols=39 Identities=23% Similarity=0.399 Sum_probs=29.7
Q ss_pred cEEEEEecCCCCeEeecCCCCCHHHHHHHHHHHHHHhhC
Q 036154 131 KWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRG 169 (193)
Q Consensus 131 kW~A~I~~~~~~kri~LGtfdT~EeAA~AYD~Aa~~~~G 169 (193)
.|=++|.--.-.-.+|.|-|+|.+||..+.-.....+..
T Consensus 9 aWWveI~T~~P~ctYyFGPF~s~~eA~~~~~gyieDL~~ 47 (68)
T PF08846_consen 9 AWWVEIETQNPNCTYYFGPFDSREEAEAALPGYIEDLES 47 (68)
T ss_pred cEEEEEEcCCCCEEEEeCCcCCHHHHHHHhccHHHHHHh
Confidence 477888875556778999999999999987665555543
No 9
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=53.81 E-value=17 Score=24.24 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=21.8
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHHHhhCC
Q 036154 141 RRVRLWLGTYDTAEEAAMVYDNAAIQLRGP 170 (193)
Q Consensus 141 ~~kri~LGtfdT~EeAA~AYD~Aa~~~~G~ 170 (193)
..-++.+|.|++.+||..+-.... ...|.
T Consensus 42 ~~yrV~~G~f~~~~~A~~~~~~l~-~~~~~ 70 (76)
T PF05036_consen 42 PWYRVRVGPFSSREEAEAALRKLK-KAAGP 70 (76)
T ss_dssp TCEEEEECCECTCCHHHHHHHHHH-HHHTS
T ss_pred ceEEEEECCCCCHHHHHHHHHHHh-HhhCC
Confidence 446789999999999988877665 34443
No 10
>PF08471 Ribonuc_red_2_N: Class II vitamin B12-dependent ribonucleotide reductase; InterPro: IPR013678 This domain is found to the N terminus of the ribonucleotide reductase barrel domain (IPR000788 from INTERPRO). It occurs in bacterial class II ribonucleotide reductase proteins which depend upon coenzyme B12 (deoxyadenosylcobalamine) []. ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0050897 cobalt ion binding, 0055114 oxidation-reduction process
Probab=53.49 E-value=15 Score=28.09 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=18.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHh
Q 036154 147 LGTYDTAEEAAMVYDNAAIQL 167 (193)
Q Consensus 147 LGtfdT~EeAA~AYD~Aa~~~ 167 (193)
-|+|+|+|+|..-||.....|
T Consensus 70 ~GYF~t~eDA~~FydEl~~mL 90 (93)
T PF08471_consen 70 GGYFATEEDAEAFYDELTYML 90 (93)
T ss_pred CCCcCCHHHHHHHHHHHHHHH
Confidence 489999999999999987665
No 11
>PF10729 CedA: Cell division activator CedA; InterPro: IPR019666 CedA is made up of four antiparallel beta-strands and an alpha-helix. It activates cell division by inhibiting chromosome over-replication. This is mediated by binding to dsDNA via the beta-sheet [, ]. ; GO: 0003677 DNA binding, 0051301 cell division; PDB: 2BN8_A 2D35_A.
Probab=48.60 E-value=43 Score=24.61 Aligned_cols=40 Identities=23% Similarity=0.121 Sum_probs=25.8
Q ss_pred CCCCceeeEEECCCCcEEEEEecCCCCeEeecCCCCCHHHHHH
Q 036154 116 PAGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAM 158 (193)
Q Consensus 116 ~~~S~yRGVr~r~~GkW~A~I~~~~~~kri~LGtfdT~EeAA~ 158 (193)
..--+||-||..+ |||.|.+.. +..-.---.|..+|.|-+
T Consensus 28 ~k~dgfrdvw~lr-gkyvafvl~--ge~f~rsp~fs~pesaqr 67 (80)
T PF10729_consen 28 LKMDGFRDVWQLR-GKYVAFVLM--GEHFRRSPAFSVPESAQR 67 (80)
T ss_dssp B-TTTECCECCCC-CEEEEEEES--SS-EEE---BSSHHHHHH
T ss_pred hhcccccceeeec-cceEEEEEe--cchhccCCCcCCcHHHHH
Confidence 4456899999777 999999986 332223456777777654
No 12
>PRK09692 integrase; Provisional
Probab=44.57 E-value=70 Score=28.90 Aligned_cols=44 Identities=20% Similarity=0.312 Sum_probs=27.8
Q ss_pred EEECCCC--cEEEEEecCCCC--eEeecCCCC--CHHHHHHHHHHHHHHh
Q 036154 124 VRQRPWG--KWAAEIRDPLRR--VRLWLGTYD--TAEEAAMVYDNAAIQL 167 (193)
Q Consensus 124 Vr~r~~G--kW~A~I~~~~~~--kri~LGtfd--T~EeAA~AYD~Aa~~~ 167 (193)
|+-++.| .|..+-+.+.+| +.+-||.|. |..||..+-..+...+
T Consensus 33 l~v~~~G~k~~~~rY~~~~~gk~~~~~lG~yp~~sl~~AR~~a~~~~~~~ 82 (413)
T PRK09692 33 LLIKSSGSKIWQFRYYRPLTKTRAKKSFGPYPSVTLADARNYRAESRSLL 82 (413)
T ss_pred EEEECCCcEEEEEEEecCCCCceeeeeCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3444555 499888765444 347899999 6777766555544433
No 13
>PF13356 DUF4102: Domain of unknown function (DUF4102); PDB: 3JU0_A 3RMP_A 3JTZ_A 2KJ8_A.
Probab=42.06 E-value=76 Score=22.77 Aligned_cols=43 Identities=26% Similarity=0.247 Sum_probs=27.5
Q ss_pred EECCCC--cEEEEEecCCCCeEeecCCCCC--HHHHHHHHHHHHHHh
Q 036154 125 RQRPWG--KWAAEIRDPLRRVRLWLGTYDT--AEEAAMVYDNAAIQL 167 (193)
Q Consensus 125 r~r~~G--kW~A~I~~~~~~kri~LGtfdT--~EeAA~AYD~Aa~~~ 167 (193)
+-.+.| .|.-+.+..+..+++.||.|.. .+||..........+
T Consensus 28 ~v~~~G~kt~~~r~~~~gk~~~~~lG~~p~~sl~~AR~~a~~~~~~~ 74 (89)
T PF13356_consen 28 RVTPSGSKTFYFRYRINGKRRRITLGRYPELSLAEAREKARELRALV 74 (89)
T ss_dssp EE-TTS-EEEEEEEEETTEEEEEEEEECTTS-HHHHHHHHHHHHHHH
T ss_pred EEEeCCCeEEEEEEEecceEEEeccCCCccCCHHHHHHHHHHHHHHH
Confidence 344554 4888888755557899999975 666655555444443
No 14
>PF14112 DUF4284: Domain of unknown function (DUF4284)
Probab=38.59 E-value=20 Score=27.95 Aligned_cols=16 Identities=25% Similarity=0.839 Sum_probs=12.7
Q ss_pred eEeecCCCCCHHHHHH
Q 036154 143 VRLWLGTYDTAEEAAM 158 (193)
Q Consensus 143 kri~LGtfdT~EeAA~ 158 (193)
..+|||+|.|.+|-..
T Consensus 2 VsiWiG~f~s~~el~~ 17 (122)
T PF14112_consen 2 VSIWIGNFKSEDELEE 17 (122)
T ss_pred eEEEEecCCCHHHHHH
Confidence 4689999999877554
No 15
>PRK10113 cell division modulator; Provisional
Probab=28.40 E-value=47 Score=24.37 Aligned_cols=40 Identities=23% Similarity=0.158 Sum_probs=26.9
Q ss_pred CCCCceeeEEECCCCcEEEEEecCCCCeEeecCCCCCHHHHHH
Q 036154 116 PAGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAM 158 (193)
Q Consensus 116 ~~~S~yRGVr~r~~GkW~A~I~~~~~~kri~LGtfdT~EeAA~ 158 (193)
-..-+|+-||..+ |||.|.+.. +..-.---.|..+|.|-+
T Consensus 28 ~kmd~frDVW~Lr-GKYVAFvl~--ge~FrRSPaFs~PEsAQR 67 (80)
T PRK10113 28 IKMDSFRDVWMLR-GKYVAFVLM--GESFLRSPAFSVPESAQR 67 (80)
T ss_pred hhhcchhhhheec-cceEEEEEe--chhhccCCccCCcHHHHH
Confidence 3456799998776 999999885 222122356777777654
No 16
>PF14032 PknH_C: PknH-like extracellular domain
Probab=23.96 E-value=1.4e+02 Score=23.75 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.3
Q ss_pred ecCCCCCHHHHHHHHHHHHHHhh
Q 036154 146 WLGTYDTAEEAAMVYDNAAIQLR 168 (193)
Q Consensus 146 ~LGtfdT~EeAA~AYD~Aa~~~~ 168 (193)
-++.|.++++|..+|+..+..+.
T Consensus 86 aV~~fp~~~~A~~~f~~~~~~w~ 108 (189)
T PF14032_consen 86 AVVVFPSAAAAQAFFARLADQWR 108 (189)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHH
Confidence 67899999999999999887764
No 17
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=22.55 E-value=1.1e+02 Score=20.44 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=27.3
Q ss_pred EEEecCCCCeEeecCCCCCHHHHHHHHHHHHHHh
Q 036154 134 AEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQL 167 (193)
Q Consensus 134 A~I~~~~~~kri~LGtfdT~EeAA~AYD~Aa~~~ 167 (193)
+.|-+.+....+|+|.-.+..|-+.|.+.|....
T Consensus 20 ~yIld~~~~i~vW~G~~~~~~e~~~a~~~a~~~~ 53 (76)
T PF00626_consen 20 CYILDCGYEIFVWVGKKSSPEEKAFAAQLAQELL 53 (76)
T ss_dssp EEEEEESSEEEEEEHTTSHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCcEEEEeccCCHHHHHHHHHHHHHhh
Confidence 5566655667789999999999999988887665
No 18
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=21.91 E-value=3e+02 Score=19.68 Aligned_cols=46 Identities=20% Similarity=0.138 Sum_probs=32.5
Q ss_pred CceeeEE-ECCCCcEEEEEecCCCCeEeecCCCCCHHHHHHHHHHHHHHh
Q 036154 119 KKFRGVR-QRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQL 167 (193)
Q Consensus 119 S~yRGVr-~r~~GkW~A~I~~~~~~kri~LGtfdT~EeAA~AYD~Aa~~~ 167 (193)
.+|-||. +-..-+-.+.|.. .|+-+..|. .+.|+|..|.+.....+
T Consensus 36 e~fpgl~~r~~~p~~t~~IF~--sGki~itGa-ks~~~~~~a~~~i~~~L 82 (86)
T PF00352_consen 36 ERFPGLIYRLRNPKATVLIFS--SGKIVITGA-KSEEEAKKAIEKILPIL 82 (86)
T ss_dssp TTESSEEEEETTTTEEEEEET--TSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEeecCCcEEEEEEc--CCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 3688874 3333456666665 888877775 68899999988876554
No 19
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]
Probab=21.86 E-value=1.3e+02 Score=24.83 Aligned_cols=37 Identities=24% Similarity=0.163 Sum_probs=28.5
Q ss_pred cEEEEEecCCCCeEeecCCCCCHHHHHHHHHHHHHHhhCC
Q 036154 131 KWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGP 170 (193)
Q Consensus 131 kW~A~I~~~~~~kri~LGtfdT~EeAA~AYD~Aa~~~~G~ 170 (193)
-|+|.|.. |+-++-=..+.++.|..|.-.|+.+|=+.
T Consensus 95 gwaArVkp---G~vlfei~g~~e~~A~EAlr~Aa~KLP~~ 131 (146)
T COG0197 95 GWAARVKP---GRVLFEIAGVPEELAREALRRAAAKLPVK 131 (146)
T ss_pred EEEEEecC---CcEEEEEecCcHHHHHHHHHHHhhcCCCc
Confidence 39999984 55555556688888999999999887554
No 20
>PRK10927 essential cell division protein FtsN; Provisional
Probab=21.32 E-value=1.4e+02 Score=27.64 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=25.9
Q ss_pred EEEEEecCCCCeEeecCCCCCHHHHHHHHHHHHH
Q 036154 132 WAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAI 165 (193)
Q Consensus 132 W~A~I~~~~~~kri~LGtfdT~EeAA~AYD~Aa~ 165 (193)
|.|+|...+.-.||.||-|.+.++|.++.++..-
T Consensus 273 ~~A~I~~~g~~~RVrVGPf~sr~eAe~a~~rLk~ 306 (319)
T PRK10927 273 FDSKITTNNGWNRVVIGPVKGKENADSTLNRLKM 306 (319)
T ss_pred CeeEEccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5666654334478999999999999999877554
Done!