Query 036154
Match_columns 193
No_of_seqs 211 out of 1063
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 17:00:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036154.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036154hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 3E-25 1E-29 155.4 6.2 60 120-179 2-62 (63)
2 3igm_B PF14_0633 protein; AP2 88.8 0.32 1.1E-05 34.9 3.2 23 117-139 4-27 (77)
3 1u3e_M HNH homing endonuclease 80.2 0.25 8.7E-06 39.0 -0.8 38 121-161 109-146 (174)
4 1z1b_A Integrase; protein-DNA 69.2 4.3 0.00015 33.4 4.0 41 123-167 15-55 (356)
5 3jtz_A Integrase; four strande 59.7 18 0.00062 25.6 5.3 44 124-167 28-75 (88)
6 3ju0_A Phage integrase; four s 42.1 41 0.0014 24.7 4.9 47 125-171 29-80 (108)
7 1x60_A Sporulation-specific N- 41.9 14 0.00048 24.7 2.1 23 143-165 46-68 (79)
8 1uta_A FTSN, MSGA, cell divisi 39.9 23 0.00079 23.9 3.0 25 141-165 44-68 (81)
9 2ftc_I Mitochondrial ribosomal 31.0 67 0.0023 24.1 4.6 37 131-169 79-115 (118)
10 2bn8_A CEDA, cell division act 27.0 57 0.0019 23.2 3.3 41 115-158 34-74 (87)
11 1kcq_A Gelsolin, brevin, ADF, 22.1 1.3E+02 0.0044 21.2 4.6 33 134-166 31-63 (104)
12 1svq_A Severin; actin-binding; 20.1 1.3E+02 0.0044 21.7 4.3 33 134-166 41-73 (114)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.91 E-value=3e-25 Score=155.40 Aligned_cols=60 Identities=62% Similarity=1.146 Sum_probs=57.0
Q ss_pred ceeeEEECCCCcEEEEEecCCC-CeEeecCCCCCHHHHHHHHHHHHHHhhCCCCCCCCCCC
Q 036154 120 KFRGVRQRPWGKWAAEIRDPLR-RVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFATP 179 (193)
Q Consensus 120 ~yRGVr~r~~GkW~A~I~~~~~-~kri~LGtfdT~EeAA~AYD~Aa~~~~G~~A~~NFp~~ 179 (193)
+|+||++++||||+|+|++|.. ++++|||+|+|+||||+|||.|++.++|.+|.+|||.+
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999988899999999999875 79999999999999999999999999999999999975
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=88.81 E-value=0.32 Score=34.90 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.5
Q ss_pred CCCceeeE-EECCCCcEEEEEecC
Q 036154 117 AGKKFRGV-RQRPWGKWAAEIRDP 139 (193)
Q Consensus 117 ~~S~yRGV-r~r~~GkW~A~I~~~ 139 (193)
..|+|.|| |..+.+.|.|.-.+.
T Consensus 4 ~~Sg~pGVsw~kR~~~WlA~W~e~ 27 (77)
T 3igm_B 4 MSSGYPGVSWNKRMCAWLAFFYDG 27 (77)
T ss_dssp CCSSSTTEEEETTTTEEEEEEEET
T ss_pred CCCCCCcEEeecCCceEEEEEecC
Confidence 57899999 799999999999984
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=80.19 E-value=0.25 Score=39.01 Aligned_cols=38 Identities=8% Similarity=-0.156 Sum_probs=27.7
Q ss_pred eeeEEECCCCcEEEEEecCCCCeEeecCCCCCHHHHHHHHH
Q 036154 121 FRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYD 161 (193)
Q Consensus 121 yRGVr~r~~GkW~A~I~~~~~~kri~LGtfdT~EeAA~AYD 161 (193)
++||.....++|.+.|.. . +.++||.|+|.+|||++|.
T Consensus 109 ~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred eeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence 356622334568888887 3 4568999999999999964
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=69.18 E-value=4.3 Score=33.44 Aligned_cols=41 Identities=20% Similarity=0.065 Sum_probs=30.4
Q ss_pred eEEECCCCcEEEEEecCCCCeEeecCCCCCHHHHHHHHHHHHHHh
Q 036154 123 GVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQL 167 (193)
Q Consensus 123 GVr~r~~GkW~A~I~~~~~~kri~LGtfdT~EeAA~AYD~Aa~~~ 167 (193)
||++++.|.|..+.. ..|+++.+|. |..||..+...+...+
T Consensus 15 ~v~~~~~g~~~~r~~--~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDP--RTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEEEETTTEEEEECT--TTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEee--cCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 677777899987654 4777889996 8888877766655544
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=59.68 E-value=18 Score=25.57 Aligned_cols=44 Identities=23% Similarity=0.360 Sum_probs=31.4
Q ss_pred EEECCCC--cEEEEEecCCCCeEeecCCCC--CHHHHHHHHHHHHHHh
Q 036154 124 VRQRPWG--KWAAEIRDPLRRVRLWLGTYD--TAEEAAMVYDNAAIQL 167 (193)
Q Consensus 124 Vr~r~~G--kW~A~I~~~~~~kri~LGtfd--T~EeAA~AYD~Aa~~~ 167 (193)
++-.+.| .|.-+-+..+..+++-||.|. |.+||...-+.+...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 3455555 488888875555779999997 5888887777766555
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=42.10 E-value=41 Score=24.67 Aligned_cols=47 Identities=30% Similarity=0.349 Sum_probs=31.8
Q ss_pred EECCCC--cEEEEEecCCCCeEeecCCCC--CHHHHHHHHHHHHHHh-hCCC
Q 036154 125 RQRPWG--KWAAEIRDPLRRVRLWLGTYD--TAEEAAMVYDNAAIQL-RGPD 171 (193)
Q Consensus 125 r~r~~G--kW~A~I~~~~~~kri~LGtfd--T~EeAA~AYD~Aa~~~-~G~~ 171 (193)
+-.+.| .|.-+.+..+..+++-||.|. |..+|-..-+.+...+ .|.+
T Consensus 29 ~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l~~GiD 80 (108)
T 3ju0_A 29 LVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLLAAGID 80 (108)
T ss_dssp EECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHHHcCCC
Confidence 455555 488888764555778999997 5788877766665554 4544
No 7
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=41.91 E-value=14 Score=24.71 Aligned_cols=23 Identities=13% Similarity=0.310 Sum_probs=18.7
Q ss_pred eEeecCCCCCHHHHHHHHHHHHH
Q 036154 143 VRLWLGTYDTAEEAAMVYDNAAI 165 (193)
Q Consensus 143 kri~LGtfdT~EeAA~AYD~Aa~ 165 (193)
-++++|.|.+.++|..+-+....
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 57899999999999888766544
No 8
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=39.93 E-value=23 Score=23.93 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=19.8
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHH
Q 036154 141 RRVRLWLGTYDTAEEAAMVYDNAAI 165 (193)
Q Consensus 141 ~~kri~LGtfdT~EeAA~AYD~Aa~ 165 (193)
.--|+.+|-|.+.++|..+-++...
T Consensus 44 ~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 44 GWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp SSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred cEEEEEECCcCCHHHHHHHHHHHHH
Confidence 3467899999999999888766554
No 9
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=30.97 E-value=67 Score=24.07 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=29.5
Q ss_pred cEEEEEecCCCCeEeecCCCCCHHHHHHHHHHHHHHhhC
Q 036154 131 KWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRG 169 (193)
Q Consensus 131 kW~A~I~~~~~~kri~LGtfdT~EeAA~AYD~Aa~~~~G 169 (193)
-|+|.|.. +..-+-++...+++.|..|...|+.+|=+
T Consensus 79 ~wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 79 HYVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred EEEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 39999986 66666676668899999999999988743
No 10
>2bn8_A CEDA, cell division activator CEDA; cell division activator protein, cell cycle protein; NMR {Escherichia coli} PDB: 2d35_A
Probab=26.97 E-value=57 Score=23.25 Aligned_cols=41 Identities=22% Similarity=0.148 Sum_probs=27.5
Q ss_pred CCCCCceeeEEECCCCcEEEEEecCCCCeEeecCCCCCHHHHHH
Q 036154 115 QPAGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAM 158 (193)
Q Consensus 115 ~~~~S~yRGVr~r~~GkW~A~I~~~~~~kri~LGtfdT~EeAA~ 158 (193)
...--+||-||..+ |||.|.+.. +..-..--.|..+|.|-+
T Consensus 34 a~kmd~frdvw~lr-gkyvafvl~--ge~frrspafsvpesaqr 74 (87)
T 2bn8_A 34 AIKMDSFRDVWMLR-GKYVAFVLM--GESFLRSPAFTVPESAQR 74 (87)
T ss_dssp CBCTTTCTTEEEET-TEEEEBCCS--SSCCCBCCCBSSHHHHHH
T ss_pred hhhcccchhheeec-cceEEEEEe--chhhccCCccCCcHHHHH
Confidence 34556899999777 999999875 222122356777777654
No 11
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=22.12 E-value=1.3e+02 Score=21.15 Aligned_cols=33 Identities=15% Similarity=0.081 Sum_probs=26.4
Q ss_pred EEEecCCCCeEeecCCCCCHHHHHHHHHHHHHH
Q 036154 134 AEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQ 166 (193)
Q Consensus 134 A~I~~~~~~kri~LGtfdT~EeAA~AYD~Aa~~ 166 (193)
+.|-+......+|.|...+..|.+.|-+.|...
T Consensus 31 ~FILd~g~~iyvW~G~~s~~~Ek~~A~~~a~~i 63 (104)
T 1kcq_A 31 CFILDLGNNIHQWCGSNSNRYERLKATQVSKGI 63 (104)
T ss_dssp EEEEECSSEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred eEEEeCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 566665566788999999999999998887544
No 12
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=20.14 E-value=1.3e+02 Score=21.66 Aligned_cols=33 Identities=12% Similarity=0.050 Sum_probs=25.9
Q ss_pred EEEecCCCCeEeecCCCCCHHHHHHHHHHHHHH
Q 036154 134 AEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQ 166 (193)
Q Consensus 134 A~I~~~~~~kri~LGtfdT~EeAA~AYD~Aa~~ 166 (193)
+.|-+......+|.|...+..|-+.|-+.|...
T Consensus 41 ~FILd~g~~iyvW~G~~ss~~Ek~~A~~~a~~i 73 (114)
T 1svq_A 41 CFLLDAGLTIYQFNGSKSSPQEKNKAAEVARAI 73 (114)
T ss_dssp EEEEEETTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEecCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 556665566788999999999999998877653
Done!