BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036158
(225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 123 bits (308), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 117/207 (56%), Gaps = 6/207 (2%)
Query: 15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVI 74
P N + +VLVG+TG GKSAT NSILG++ F S + +TK CE + + K+ ++V V+
Sbjct: 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 83
Query: 75 DTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK 134
DTPG+FD+ + SKEI++CI +T G HA+L+V + R++EEE A + FG+
Sbjct: 84 DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKXFGE 142
Query: 135 KISDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRT 194
+ + I++F YL RE P+ ++++ + +R +NK A++
Sbjct: 143 RARSFXILIF--TRKDDLGDTNLHDYL-REAPEDIQDLXDIFGDRYCALNNKATG-AEQE 198
Query: 195 EQVGKLLSLVNSVIVQNGGQPYTDEIF 221
Q +LL L+ V+ +N YT+ +
Sbjct: 199 AQRAQLLGLIQRVVRENKEGCYTNRXY 225
>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1
pdb|3V70|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 1
Length = 247
Score = 107 bits (266), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 113/204 (55%), Gaps = 8/204 (3%)
Query: 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79
R L+LVGRTG GKSAT NSILG+R F S+ G++ VT+ C + D V V+DTP +
Sbjct: 22 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTG-SRRWDKCHVEVVDTPDI 80
Query: 80 FDSS-ADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISD 138
F S + ++ +E C ++ G HA+L+V + RF+ ++ A+ + +FG+ +
Sbjct: 81 FSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQL-GRFTAQDQQAVRQVRDMFGEDVLK 139
Query: 139 YMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTE-QV 197
+M++VF Y+ + L+E++ C R FDN+ T + E QV
Sbjct: 140 WMVIVF--TRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRA--TGREQEAQV 195
Query: 198 GKLLSLVNSVIVQNGGQPYTDEIF 221
+LL +V +++++ G Y++E++
Sbjct: 196 VQLLGMVEGLVLEHKGAHYSNEVY 219
>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTM|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTN|A Chain A, Crystal Structure Of Gtp-Bound Human Gimap2, Amino Acid
Residues 1-234
Length = 234
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 113/213 (53%), Gaps = 5/213 (2%)
Query: 10 SKPTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ 69
+K S E ++LVG+TG GKSA NSIL K+AF+SK GS +TKTC + + +
Sbjct: 13 AKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNRE 72
Query: 70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILE 129
+V +IDTP +F E + KE+ +C ++ G H +L+V + R++ ++ A ++
Sbjct: 73 IV-IIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVK 130
Query: 130 SLFGKKISDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNKTKD 189
+FG+ + IV+F Y+ K L +++ C R F+N+ +
Sbjct: 131 EIFGEDAMGHTIVLF--THKEDLNGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRA-E 187
Query: 190 TAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFA 222
+ + +QV +L+ + ++++ G YT+ +++
Sbjct: 188 GSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYS 220
>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|C Chain C, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|D Chain D, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
Length = 209
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 111/207 (53%), Gaps = 5/207 (2%)
Query: 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVID 75
S E ++LVG+TG GKSA NSIL K+AF+SK GS +TKTC + + ++V +ID
Sbjct: 2 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 60
Query: 76 TPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK 135
TP +F E + KE+ +C ++ G H +L+V + R++ ++ A ++ +FG+
Sbjct: 61 TPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGED 119
Query: 136 ISDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTE 195
+ IV+F Y+ K L +++ C R F+N+ + + + +
Sbjct: 120 AMGHTIVLF--THKEDLNGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRA-EGSNQDD 176
Query: 196 QVGKLLSLVNSVIVQNGGQPYTDEIFA 222
QV +L+ + ++++ G YT+ +++
Sbjct: 177 QVKELMDCIEDLLMEKNGDHYTNGLYS 203
>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
pdb|2XTO|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
Length = 240
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 110/204 (53%), Gaps = 5/204 (2%)
Query: 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPG 78
E ++LVG+TG GKSA NSIL K+AF+SK GS +TKTC + + ++V +IDTP
Sbjct: 2 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPD 60
Query: 79 LFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISD 138
+F E + KE+ +C ++ G H +L+V + R++ ++ A ++ +FG+
Sbjct: 61 MFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGEDAMG 119
Query: 139 YMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVG 198
+ IV+F Y+ K L +++ C R F+N+ + + + +QV
Sbjct: 120 HTIVLF--THKEDLNGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRA-EGSNQDDQVK 176
Query: 199 KLLSLVNSVIVQNGGQPYTDEIFA 222
+L+ + ++++ G YT+ +++
Sbjct: 177 ELMDCIEDLLMEKNGDHYTNGLYS 200
>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino
Acid Residues 1-260
Length = 260
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 110/213 (51%), Gaps = 5/213 (2%)
Query: 10 SKPTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ 69
+K S E ++LVG+TG GKSA NSIL K+AF+SK GS +TKTC + + +
Sbjct: 13 AKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNRE 72
Query: 70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILE 129
+V +IDTP F E + KE+ +C ++ G H +L+V + R++ ++ A ++
Sbjct: 73 IV-IIDTPDXFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVK 130
Query: 130 SLFGKKISDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNKTKD 189
+FG+ + IV+F Y K L +++ C R F+N+ +
Sbjct: 131 EIFGEDAXGHTIVLF--THKEDLNGGSLXDYXHDSDNKALSKLVAACGGRICAFNNRA-E 187
Query: 190 TAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFA 222
+ + +QV +L + ++ + G YT+ +++
Sbjct: 188 GSNQDDQVKELXDCIEDLLXEKNGDHYTNGLYS 220
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 22 LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81
++++G+ G GKS+T NS++G++ + + + + RTM G +N+IDTPGL +
Sbjct: 39 VLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLVE 96
Query: 82 S 82
+
Sbjct: 97 A 97
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 22 LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81
++++G+ G GKS+T NS++G++ + + + + RTM G +N+IDTPGL +
Sbjct: 39 VLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLVE 96
Query: 82 S 82
+
Sbjct: 97 A 97
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 22 LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81
++++G+ G GKS+T NS++G++ + + + + RTM G +N+IDTPGL +
Sbjct: 38 VLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLVE 95
Query: 82 S 82
+
Sbjct: 96 A 96
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 22 LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81
++++G+ G GKS+T NS++G++ + + + + RTM G +N+IDTPGL +
Sbjct: 39 VLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLVE 96
Query: 82 S 82
+
Sbjct: 97 A 97
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 22 LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81
++++G+ G GKS+T NSI+G+R S + + R+ + G +N+IDTPGL +
Sbjct: 42 ILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRS--RAGFTLNIIDTPGLIE 99
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 22 LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81
+++ G+ G GKS+T NSI+G+R S + + R+ + G +N+IDTPGL +
Sbjct: 42 ILVXGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVXVSRS--RAGFTLNIIDTPGLIE 99
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 22 LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGL 79
+ +VG+ GKS N++LG K S T + R +L +G Q+V +DTPGL
Sbjct: 10 VAIVGKPNVGKSTLLNNLLG---VKVAPISPRPQTTRKRLRGILTEGRRQIV-FVDTPGL 65
Query: 80 FDS-SADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK 134
A EF+ +E+ + + ++AV+ V +R+ + E+ L+ L GK
Sbjct: 66 HKPMDALGEFMDQEVYEALA----DVNAVVWVVDLRHPPTPEDELVARALKPLVGK 117
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 11/123 (8%)
Query: 6 IDADSKPTSPS-NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTM 64
+ DS +S S N +VL+G G GKS AN G S V +RT+
Sbjct: 23 MSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAG--VHDSMDSDCEVLGEDTYERTL 80
Query: 65 LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAA 124
+ DG+ +I ++++ ++E++ ++ +G A L+V+S+ +R S E+ +
Sbjct: 81 MVDGESATII-LLDMWENKGENEWLHDHCMQ-VG------DAYLIVYSITDRASFEKASE 132
Query: 125 IHI 127
+ I
Sbjct: 133 LRI 135
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 33.5 bits (75), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80
+++VG GKS N + GKRA S G+TK +Q L++G V ++DTPG+
Sbjct: 101 RVLIVGVPNTGKSTIINKLKGKRA-SSVGAQPGITKG--IQWFSLENG--VKILDTPGIL 155
Query: 81 DSSADSE 87
+ SE
Sbjct: 156 YKNIFSE 162
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDT 76
N +VL+G G GKS AN G S V +RT++ DG+ +I
Sbjct: 4 NTYYRVVLIGEQGVGKSTLANIFAG--VHDSMDSDCEVLGEDTYERTLMVDGESATII-L 60
Query: 77 PGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHI 127
++++ ++E++ ++ +G A L+V+S+ +R S E+ + + I
Sbjct: 61 LDMWENKGENEWLHDHCMQ-VG------DAYLIVYSITDRASFEKASELRI 104
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 10/106 (9%)
Query: 22 LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81
+VL+G G GKS AN G S V +RT++ DG+ +I +++
Sbjct: 9 VVLIGEQGVGKSTLANIFAG--VHDSMDSDXEVLGEDTYERTLMVDGESATII-LLDMWE 65
Query: 82 SSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHI 127
+ ++E++ ++ +G A L+V+S+ +R S E+ + + I
Sbjct: 66 NKGENEWLHDHXMQ-VG------DAYLIVYSITDRASFEKASELRI 104
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 19 ERNLVLVGRTGNGKSATANSILGKRAFKSK--AGSSGVTKTCEMQRT--MLKDGQV---V 71
E L++VG +G GKS NS+ + + S + KT +++++ ++K+G V +
Sbjct: 3 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 62
Query: 72 NVIDTPGLFDSSADS 86
++DTPG D+ +S
Sbjct: 63 TIVDTPGFGDAVDNS 77
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSK--AGSSGVTKTCEMQRT--MLKDGQV- 70
S E L++VG +G GKS NS+ + + S + KT +++++ ++K+G V
Sbjct: 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQ 64
Query: 71 --VNVIDTPGLFDSSADS 86
+ ++DTPG D+ +S
Sbjct: 65 LLLTIVDTPGFGDAVDNS 82
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 22 LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81
+VL+G G GKS AN G S V +RT++ DG+ +I +++
Sbjct: 9 VVLIGEQGVGKSTLANIFAG--VHDSMDSDXEVLGEDTYERTLMVDGESATII-LLDMWE 65
Query: 82 SSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHI 127
+ ++E++ C+ + A L+V+S+ +R S E+ + + I
Sbjct: 66 NKGENEWLHDH---CMQVGD----AYLIVYSITDRASFEKASELRI 104
>pdb|1TQ6|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVI--DTPG 78
N+ + G TG+GKS+ N++ G + A +GV + M+R K + NV+ D PG
Sbjct: 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-MERHPYKHPNIPNVVFWDLPG 129
Query: 79 L 79
+
Sbjct: 130 I 130
>pdb|1TQ4|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVI--DTPG 78
N+ + G TG+GKS+ N++ G + A +GV + M+R K + NV+ D PG
Sbjct: 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-MERHPYKHPNIPNVVFWDLPG 129
Query: 79 L 79
+
Sbjct: 130 I 130
>pdb|1TPZ|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TPZ|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 422
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVI--DTPG 78
N+ + G TG+GKS+ N++ G + A +GV + M+R K + NV+ D PG
Sbjct: 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-MERHPYKHPNIPNVVFWDLPG 129
Query: 79 L 79
+
Sbjct: 130 I 130
>pdb|1TQD|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQD|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVI--DTPG 78
N+ + G TG+GKS+ N++ G + A +GV + M+R K + NV+ D PG
Sbjct: 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-MERHPYKHPNIPNVVFWDLPG 129
Query: 79 L 79
+
Sbjct: 130 I 130
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 12/76 (15%)
Query: 22 LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-----DGQVVNVIDT 76
+V+ GR GKS+ N++ G+ A + VT R +L+ DG +++IDT
Sbjct: 10 VVIAGRPNAGKSSLLNALAGREA-------AIVTDIAGTTRDVLREHIHIDGMPLHIIDT 62
Query: 77 PGLFDSSADSEFVSKE 92
GL ++S + E + E
Sbjct: 63 AGLREASDEVERIGIE 78
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 5 VIDADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTM 64
VI A P G + L GR+ GKS+ NS++ ++ + G T+T +
Sbjct: 9 VISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY--I 66
Query: 65 LKDGQVVNVIDTPGL-FDSSADSEFVSK-EIVKCIGMTKDGIHAVLVVFSVRNRFSEEE 121
+ D ++ +D PG F + SE + +++ T++ + AV+ + +R+ S ++
Sbjct: 67 INDE--LHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDD 123
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 12/76 (15%)
Query: 22 LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-----DGQVVNVIDT 76
+V+ GR GKS+ N++ G+ A + VT R +L+ DG +++IDT
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREA-------AIVTDIAGTTRDVLREHIHIDGMPLHIIDT 59
Query: 77 PGLFDSSADSEFVSKE 92
GL ++S + E + E
Sbjct: 60 AGLREASDEVERIGIE 75
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
Length = 172
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 12/76 (15%)
Query: 22 LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-----DGQVVNVIDT 76
+V+ GR GKS+ N++ G+ A + VT R +L+ DG +++IDT
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREA-------AIVTDIAGTTRDVLREHIHIDGXPLHIIDT 59
Query: 77 PGLFDSSADSEFVSKE 92
GL ++S + E + E
Sbjct: 60 AGLREASDEVERIGIE 75
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 19 ERNLVLVGRTGNGKSATANSILGKRAFKSK--AGSSGVTKTCEMQRT--MLKDGQV---V 71
E L++VG +G GKS NS+ + + S + KT +++++ ++K+G V +
Sbjct: 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 90
Query: 72 NVIDTPGLFDSSADS 86
++DTPG D+ +S
Sbjct: 91 TIVDTPGFGDAVDNS 105
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 10/71 (14%)
Query: 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSG----VTKTCEMQRT--MLKDGQV---V 71
N+++VG++G GKS N++ K KA S + KT E++ ++++G V +
Sbjct: 4 NIMVVGQSGLGKSTLVNTLF-KSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKL 62
Query: 72 NVIDTPGLFDS 82
VIDTPG D
Sbjct: 63 TVIDTPGFGDQ 73
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 15/77 (19%)
Query: 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAG-------SSGVTKTCEMQRT--------M 64
R + LVG G+GK+ ++L K K + G ++ T ++ RT +
Sbjct: 10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPL 69
Query: 65 LKDGQVVNVIDTPGLFD 81
L G V ++D PG D
Sbjct: 70 LFRGHRVFLLDAPGYGD 86
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 35/97 (36%), Gaps = 22/97 (22%)
Query: 13 TSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGS----------------SGVTK 56
T+P N RN+ + GK+ T +L K G G+T
Sbjct: 7 TTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITI 66
Query: 57 TCEMQRTMLK------DGQVVNVIDTPGLFDSSADSE 87
T T K D VNVIDTPG D + + E
Sbjct: 67 TSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVE 103
>pdb|1NMR|A Chain A, Solution Structure Of C-Terminal Domain From Trypanosoma
Cruzi Poly(A)-Binding Protein
Length = 85
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 38 SILGKRAFKS--KAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDS 82
++LG+R + + K M M +G+++N++DTPGL D+
Sbjct: 25 NVLGERLYNHIVAINPAAAAKVTGMLLEM-DNGEILNLLDTPGLLDA 70
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 22 LVLVGRTGNGKSATANSILGKRAFKSKA---GSSGVTKTCEMQRTMLKDGQVVNVIDTPG 78
+++VGR GKS N ++ K+ KA GVT+ +Q T+ G+ ++DT G
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKKK----KAIVEDEEGVTRDP-VQDTVEWYGKTFKLVDTCG 58
Query: 79 LFDSSAD 85
+FD+ D
Sbjct: 59 VFDNPQD 65
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTM-LKDGQVVNVIDTPG 78
R +V+ GR GKS+ N+++G+ S T T + ++M L V ++DTPG
Sbjct: 35 RYIVVAGRRNVGKSSFMNALVGQNV--SIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPG 92
Query: 79 LFD 81
L D
Sbjct: 93 LDD 95
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 29.3 bits (64), Expect = 1.9, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 17/84 (20%)
Query: 20 RNLVLVGRTGNGKSATANSIL----------------GKRAFKSKAGSSGVTKTCEMQRT 63
RN+V+ GK+ T IL F + G+T T +
Sbjct: 13 RNIVIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTC 72
Query: 64 MLKDGQVVNVIDTPGLFDSSADSE 87
KD ++ N+IDTPG D + + E
Sbjct: 73 FWKDHRI-NIIDTPGHVDFTIEVE 95
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 14/95 (14%)
Query: 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPG 78
E NL ++GR G GKSA L KR F S+ + T + T+ + V+DT
Sbjct: 21 EVNLAILGRRGAGKSALTVKFLTKR-FISEY-DPNLEDTYSSEETVDHQPVHLRVMDTAD 78
Query: 79 LFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSV 113
L D+ + E + HA LVV+SV
Sbjct: 79 L-DTPRNCE-----------RYLNWAHAFLVVYSV 101
>pdb|4F2U|A Chain A, Structure Of The N254yH258Y DOUBLE MUTANT OF THE
Phosphatidylinositol-Specific Phospholipase C From
S.Aureus
Length = 310
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 13/98 (13%)
Query: 51 SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM-TKDGIHAVLV 109
S ++K+ E + L DG+ + I+ PG DS + F K+ VK + T+D + +
Sbjct: 1 SDSLSKSPENWMSKLDDGKHLTEINIPGSHDSGS---FTLKDPVKSVWAKTQDKDYLTQM 57
Query: 110 -----VFSVRNRFSEEEGAAIH----ILESLFGKKISD 138
F +R R S + ++H L GK + D
Sbjct: 58 KSGVRFFDIRGRASADNMISVHHGMVYLHHELGKFLDD 95
>pdb|3V16|A Chain A, An Intramolecular Pi-Cation Latch In
Phosphatidylinositol-Specific Phospholipase C From
S.Aureus Controls Substrate Access To The Active Site
Length = 303
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 13/98 (13%)
Query: 51 SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM-TKDGIHAVLV 109
S ++K+ E + L DG+ + I+ PG DS + F K+ VK + T+D + +
Sbjct: 1 SDSLSKSPENWMSKLDDGKHLTEINIPGSHDSGS---FTLKDPVKSVWAKTQDKDYLTQM 57
Query: 110 -----VFSVRNRFSEEEGAAIH----ILESLFGKKISD 138
F +R R S + ++H L GK + D
Sbjct: 58 KSGVRFFDIRGRASADNMISVHHGMVYLHHELGKFLDD 95
>pdb|4F2T|A Chain A, Modulation Of S.Aureus Phosphatidylinositol-Specific
Phospholipase C Membrane Binding
Length = 310
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 13/98 (13%)
Query: 51 SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM-TKDGIHAVLV 109
S ++K+ E + L DG+ + I+ PG DS + F K+ VK + T+D + +
Sbjct: 1 SDSLSKSPENWMSKLDDGKHLTEINIPGSHDSGS---FTLKDPVKSVWAKTQDKDYLTQM 57
Query: 110 -----VFSVRNRFSEEEGAAIH----ILESLFGKKISD 138
F +R R S + ++H L GK + D
Sbjct: 58 KSGVRFFDIRGRASADNMISVHHGMVYLHHELGKFLDD 95
>pdb|4F2B|A Chain A, Modulation Of S.Aureus Phosphatidylinositol-Specific
Phospholipase C Membrane Binding
pdb|4F2B|B Chain B, Modulation Of S.Aureus Phosphatidylinositol-Specific
Phospholipase C Membrane Binding
Length = 310
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 13/98 (13%)
Query: 51 SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM-TKDGIHAVLV 109
S ++K+ E + L DG+ + I+ PG DS + F K+ VK + T+D + +
Sbjct: 1 SDSLSKSPENWMSKLDDGKHLTEINIPGSHDSGS---FTLKDPVKSVWAKTQDKDYLTQM 57
Query: 110 -----VFSVRNRFSEEEGAAIH----ILESLFGKKISD 138
F +R R S + ++H L GK + D
Sbjct: 58 KSGVRFFDIRGRASADNMISVHHGMVYLHHELGKFLDD 95
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
Query: 23 VLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDS 82
+++G GKS N L K+ G+T + + +K G+ + ++DTPG+
Sbjct: 124 LIIGIPNVGKSTLINR-LAKKNIAKTGDRPGITTSQQW----VKVGKELELLDTPGILWP 178
Query: 83 SADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEE 121
+ E V + G KD I + V RF EE
Sbjct: 179 KFEDELVGLRLA-VTGAIKDSIINLQDVAVFGLRFLEEH 216
>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|B Chain B, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|C Chain C, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|D Chain D, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|F Chain F, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|E Chain E, Crystal Structure Of The Kinase Domain Of Mpp1P55
Length = 197
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDT 76
G + LVL+G +G G+S N++L + K V T R +DG+ + I T
Sbjct: 17 QGRKTLVLIGASGVGRSHIKNALLSQNPEKF---VYPVPYTTRPPRKSEEDGKEYHFIST 73
Query: 77 PGLFDSSADSEFV 89
+ + + +EF+
Sbjct: 74 EEMTRNISANEFL 86
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In
Complex With Dna
Length = 387
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGV 54
N +L G TG GK+A A +L R +++A S GV
Sbjct: 46 NALLYGLTGTGKTAVARLVL--RRLEARASSLGV 77
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 15/83 (18%)
Query: 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSS--GVTKTCEMQRTMLK----------- 66
RN+ ++ GK+ T IL K G + G ++ M++ +
Sbjct: 11 RNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 67 --DGQVVNVIDTPGLFDSSADSE 87
+G VN+IDTPG D + + E
Sbjct: 71 AWEGHRVNIIDTPGHVDFTVEVE 93
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 15/83 (18%)
Query: 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSS--GVTKTCEMQRTMLK----------- 66
RN+ ++ GK+ T IL K G + G ++ M++ +
Sbjct: 11 RNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 67 --DGQVVNVIDTPGLFDSSADSE 87
+G VN+IDTPG D + + E
Sbjct: 71 AWEGHRVNIIDTPGHVDLTVEVE 93
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 11/78 (14%)
Query: 22 LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVT---KTCEMQRTMLKDGQVVNVIDTPG 78
+ L+G GKS N++ G+ + GVT K E + +G+ V+D PG
Sbjct: 10 IALIGNPNVGKSTIFNALTGENVYI--GNWPGVTVEKKEGEFEY----NGEKFKVVDLPG 63
Query: 79 LFDSSADS--EFVSKEIV 94
++ +A+S E ++++ +
Sbjct: 64 VYSLTANSIDEIIARDYI 81
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 16 SNGERNLVLVGRTGNGKSATANSILGKR-AFKSKAGSSGVTKTCEMQRTMLKDGQVVNVI 74
SN + L+L+GR+G+GKS+ + I AF ++ G T E +N+
Sbjct: 3 SNNRKKLLLMGRSGSGKSSMRSIIFSNYSAFDTRR--LGATIDVEHSHLRFLGNMTLNLW 60
Query: 75 DTPG 78
D G
Sbjct: 61 DCGG 64
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 11/78 (14%)
Query: 22 LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVT---KTCEMQRTMLKDGQVVNVIDTPG 78
+ L+G GKS N++ G+ + GVT K E + +G+ V+D PG
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVYI--GNWPGVTVEKKEGEFEY----NGEKFKVVDLPG 59
Query: 79 LFDSSADS--EFVSKEIV 94
++ +A+S E ++++ +
Sbjct: 60 VYSLTANSIDEIIARDYI 77
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 11/78 (14%)
Query: 22 LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVT---KTCEMQRTMLKDGQVVNVIDTPG 78
+ L+G GKS N++ G+ + GVT K E + +G+ V+D PG
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVYI--GNWPGVTVEKKEGEFEY----NGEKFKVVDLPG 59
Query: 79 LFDSSADS--EFVSKEIV 94
++ +A+S E ++++ +
Sbjct: 60 VYSLTANSIDEIIARDYI 77
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 11/78 (14%)
Query: 22 LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVT---KTCEMQRTMLKDGQVVNVIDTPG 78
+ L+G GKS N++ G+ + GVT K E + +G+ V+D PG
Sbjct: 7 IALIGNPNVGKSTIFNALTGENVYI--GNWPGVTVEKKEGEFEY----NGEKFKVVDLPG 60
Query: 79 LFDSSADS--EFVSKEIV 94
++ +A+S E ++++ +
Sbjct: 61 VYSLTANSIDEIIARDYI 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,993,400
Number of Sequences: 62578
Number of extensions: 215952
Number of successful extensions: 823
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 775
Number of HSP's gapped (non-prelim): 58
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)