Query 036158
Match_columns 225
No_of_seqs 133 out of 1551
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 10:00:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036158.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036158hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04548 AIG1: AIG1 family; I 100.0 5E-39 1.1E-43 248.8 18.1 202 20-225 1-202 (212)
2 cd01852 AIG1 AIG1 (avrRpt2-ind 100.0 3E-37 6.5E-42 236.5 22.7 196 20-221 1-196 (196)
3 TIGR00991 3a0901s02IAP34 GTP-b 99.9 3.2E-23 6.9E-28 165.6 19.2 197 13-214 32-249 (313)
4 COG1160 Predicted GTPases [Gen 99.9 7.7E-24 1.7E-28 174.5 14.3 162 20-209 4-165 (444)
5 COG1159 Era GTPase [General fu 99.9 1.8E-23 4E-28 163.8 15.1 179 17-220 4-182 (298)
6 TIGR00993 3a0901s04IAP86 chlor 99.9 2.3E-22 5E-27 172.7 20.0 163 17-184 116-287 (763)
7 COG0218 Predicted GTPase [Gene 99.9 3.4E-22 7.3E-27 148.8 16.7 172 16-210 21-198 (200)
8 cd01853 Toc34_like Toc34-like 99.9 7.8E-22 1.7E-26 155.5 15.7 135 15-153 27-165 (249)
9 PF02421 FeoB_N: Ferrous iron 99.9 4.6E-22 1E-26 145.0 12.7 156 20-204 1-156 (156)
10 TIGR00436 era GTP-binding prot 99.9 3.8E-21 8.1E-26 154.3 14.9 166 21-212 2-167 (270)
11 COG1160 Predicted GTPases [Gen 99.9 2.1E-21 4.5E-26 160.2 13.5 187 18-221 177-363 (444)
12 PRK12298 obgE GTPase CgtA; Rev 99.9 1.1E-20 2.3E-25 157.8 17.6 171 21-211 161-335 (390)
13 PRK12299 obgE GTPase CgtA; Rev 99.9 1.5E-19 3.2E-24 148.3 20.8 172 20-212 159-331 (335)
14 PRK15494 era GTPase Era; Provi 99.9 1.8E-20 3.9E-25 154.5 15.1 177 17-220 50-226 (339)
15 PRK12297 obgE GTPase CgtA; Rev 99.8 1E-19 2.3E-24 152.8 18.8 167 21-212 160-330 (424)
16 PRK00089 era GTPase Era; Revie 99.8 2.7E-20 5.8E-25 151.1 14.6 177 18-219 4-180 (292)
17 TIGR03594 GTPase_EngA ribosome 99.8 2.6E-19 5.6E-24 152.8 19.2 184 17-218 170-353 (429)
18 PF01926 MMR_HSR1: 50S ribosom 99.8 6E-20 1.3E-24 129.0 12.5 116 21-146 1-116 (116)
19 TIGR02729 Obg_CgtA Obg family 99.8 4.5E-19 9.7E-24 145.3 19.4 167 20-208 158-328 (329)
20 PRK00093 GTP-binding protein D 99.8 2.6E-19 5.7E-24 153.0 18.5 179 17-214 171-349 (435)
21 PRK12296 obgE GTPase CgtA; Rev 99.8 7.1E-19 1.5E-23 149.7 20.8 188 2-212 120-343 (500)
22 cd01895 EngA2 EngA2 subfamily. 99.8 2.6E-19 5.6E-24 133.7 15.7 172 19-207 2-173 (174)
23 cd01897 NOG NOG1 is a nucleola 99.8 2.6E-19 5.7E-24 133.5 15.2 163 20-208 1-167 (168)
24 PRK00454 engB GTP-binding prot 99.8 1.3E-18 2.8E-23 133.1 19.3 172 17-210 22-195 (196)
25 TIGR03594 GTPase_EngA ribosome 99.8 2.1E-19 4.6E-24 153.3 16.2 162 21-211 1-162 (429)
26 PRK03003 GTP-binding protein D 99.8 6.7E-19 1.4E-23 151.5 18.9 183 18-220 210-393 (472)
27 cd01898 Obg Obg subfamily. Th 99.8 5.4E-19 1.2E-23 132.0 16.1 164 21-207 2-169 (170)
28 cd01894 EngA1 EngA1 subfamily. 99.8 1.3E-19 2.7E-24 133.5 12.5 156 23-207 1-156 (157)
29 PRK03003 GTP-binding protein D 99.8 2.6E-19 5.6E-24 154.0 16.1 165 17-210 36-200 (472)
30 TIGR03598 GTPase_YsxC ribosome 99.8 5.7E-19 1.2E-23 133.4 15.4 127 16-152 15-144 (179)
31 PF00009 GTP_EFTU: Elongation 99.8 6.3E-20 1.4E-24 139.7 9.4 167 18-209 2-187 (188)
32 cd04171 SelB SelB subfamily. 99.8 3E-18 6.4E-23 127.1 17.8 162 20-206 1-163 (164)
33 TIGR03156 GTP_HflX GTP-binding 99.8 8.4E-19 1.8E-23 144.9 15.5 162 18-207 188-350 (351)
34 cd04163 Era Era subfamily. Er 99.8 8E-19 1.7E-23 130.0 14.0 164 19-207 3-167 (168)
35 COG0486 ThdF Predicted GTPase 99.8 4.2E-19 9.1E-24 147.0 13.5 167 14-211 212-378 (454)
36 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1.7E-18 3.6E-23 129.0 15.0 161 20-210 1-167 (168)
37 COG3596 Predicted GTPase [Gene 99.8 8.1E-20 1.8E-24 141.5 8.0 183 16-215 36-228 (296)
38 cd04164 trmE TrmE (MnmE, ThdF, 99.8 4E-18 8.7E-23 125.3 16.8 155 20-208 2-156 (157)
39 cd01850 CDC_Septin CDC/Septin. 99.8 3.4E-18 7.4E-23 137.1 17.7 152 19-185 4-184 (276)
40 PRK00093 GTP-binding protein D 99.8 1.6E-18 3.4E-23 148.2 16.3 158 20-206 2-159 (435)
41 PRK09518 bifunctional cytidyla 99.8 2.1E-18 4.6E-23 154.8 16.8 165 17-210 273-437 (712)
42 PRK09518 bifunctional cytidyla 99.8 5.9E-18 1.3E-22 152.0 19.2 183 18-220 449-632 (712)
43 PRK04213 GTP-binding protein; 99.8 5.7E-18 1.2E-22 130.1 16.6 172 17-213 7-196 (201)
44 cd00881 GTP_translation_factor 99.8 1.7E-18 3.7E-23 131.3 13.4 165 21-209 1-187 (189)
45 cd04104 p47_IIGP_like p47 (47- 99.8 9.1E-18 2E-22 128.7 16.2 175 20-214 2-189 (197)
46 PRK11058 GTPase HflX; Provisio 99.8 7.3E-18 1.6E-22 142.4 16.1 166 19-210 197-363 (426)
47 cd01878 HflX HflX subfamily. 99.8 9.8E-18 2.1E-22 129.2 15.2 164 17-207 39-203 (204)
48 cd04160 Arfrp1 Arfrp1 subfamil 99.8 7.4E-18 1.6E-22 125.6 14.0 161 21-205 1-165 (167)
49 cd01879 FeoB Ferrous iron tran 99.8 1.9E-17 4E-22 122.1 15.8 156 24-208 1-156 (158)
50 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 1.4E-17 3.1E-22 124.0 15.2 161 22-205 2-162 (164)
51 cd01884 EF_Tu EF-Tu subfamily. 99.8 1.4E-17 2.9E-22 127.2 14.8 168 18-207 1-191 (195)
52 COG0536 Obg Predicted GTPase [ 99.8 1.7E-17 3.6E-22 132.2 15.4 190 2-212 120-336 (369)
53 cd01864 Rab19 Rab19 subfamily. 99.8 2.4E-17 5.3E-22 122.7 15.2 160 18-207 2-164 (165)
54 cd01891 TypA_BipA TypA (tyrosi 99.8 3.8E-17 8.2E-22 125.0 16.4 166 19-209 2-192 (194)
55 smart00175 RAB Rab subfamily o 99.8 1.6E-16 3.6E-21 117.7 19.1 160 20-210 1-163 (164)
56 cd01861 Rab6 Rab6 subfamily. 99.8 1.1E-16 2.3E-21 118.5 18.0 157 20-207 1-160 (161)
57 TIGR00450 mnmE_trmE_thdF tRNA 99.8 7.8E-17 1.7E-21 136.9 19.4 124 17-151 201-324 (442)
58 cd04119 RJL RJL (RabJ-Like) su 99.8 9.4E-17 2E-21 119.4 17.6 161 20-208 1-166 (168)
59 cd04121 Rab40 Rab40 subfamily. 99.8 1.5E-16 3.2E-21 121.0 18.7 165 18-214 5-172 (189)
60 PRK05291 trmE tRNA modificatio 99.8 1.5E-17 3.2E-22 142.0 14.7 158 17-210 213-371 (449)
61 cd01889 SelB_euk SelB subfamil 99.8 1.1E-17 2.5E-22 127.7 12.7 168 20-209 1-186 (192)
62 cd01881 Obg_like The Obg-like 99.8 1.9E-17 4.2E-22 124.1 13.8 162 24-207 1-175 (176)
63 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 3.9E-17 8.4E-22 122.3 15.3 164 21-213 2-169 (170)
64 cd04149 Arf6 Arf6 subfamily. 99.8 3.1E-17 6.8E-22 122.6 14.8 155 17-205 7-166 (168)
65 cd04158 ARD1 ARD1 subfamily. 99.8 2.6E-17 5.6E-22 123.1 14.2 160 21-211 1-163 (169)
66 cd01888 eIF2_gamma eIF2-gamma 99.8 1.5E-17 3.3E-22 128.0 13.2 166 20-210 1-200 (203)
67 cd01865 Rab3 Rab3 subfamily. 99.8 1.5E-16 3.3E-21 118.4 18.2 159 20-209 2-163 (165)
68 cd04142 RRP22 RRP22 subfamily. 99.8 1.5E-16 3.3E-21 121.9 18.5 174 20-214 1-179 (198)
69 cd01867 Rab8_Rab10_Rab13_like 99.8 1.3E-16 2.8E-21 119.0 17.8 160 19-209 3-165 (167)
70 cd04124 RabL2 RabL2 subfamily. 99.8 5.6E-17 1.2E-21 120.3 15.6 157 20-210 1-159 (161)
71 cd01876 YihA_EngB The YihA (En 99.8 1.7E-16 3.7E-21 117.8 18.1 163 22-207 2-169 (170)
72 cd04109 Rab28 Rab28 subfamily. 99.8 1.5E-16 3.3E-21 123.6 18.3 164 20-211 1-168 (215)
73 cd01866 Rab2 Rab2 subfamily. 99.8 1.7E-16 3.6E-21 118.6 17.9 161 19-209 4-166 (168)
74 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 1.5E-16 3.2E-21 118.5 17.5 159 20-209 3-164 (166)
75 smart00177 ARF ARF-like small 99.8 6.4E-17 1.4E-21 121.7 15.5 161 17-208 11-173 (175)
76 cd04140 ARHI_like ARHI subfami 99.8 7.2E-17 1.6E-21 120.2 15.6 160 20-207 2-163 (165)
77 PF00735 Septin: Septin; Inte 99.8 2E-17 4.3E-22 132.6 13.0 154 19-186 4-184 (281)
78 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 2.3E-16 5E-21 118.4 18.1 164 19-213 2-168 (172)
79 cd04122 Rab14 Rab14 subfamily. 99.7 2.4E-16 5.2E-21 117.4 17.8 158 20-208 3-163 (166)
80 cd04154 Arl2 Arl2 subfamily. 99.7 8.6E-17 1.9E-21 120.7 15.5 158 14-205 9-171 (173)
81 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 4.5E-17 9.8E-22 123.4 13.9 164 19-211 3-172 (183)
82 cd04113 Rab4 Rab4 subfamily. 99.7 1.8E-16 3.8E-21 117.4 16.7 157 20-206 1-159 (161)
83 cd04127 Rab27A Rab27a subfamil 99.7 3.9E-16 8.4E-21 117.7 18.9 164 18-210 3-178 (180)
84 cd01868 Rab11_like Rab11-like. 99.7 2.5E-16 5.5E-21 117.1 17.5 158 19-207 3-163 (165)
85 cd04145 M_R_Ras_like M-Ras/R-R 99.7 2.9E-16 6.3E-21 116.5 17.7 159 19-208 2-163 (164)
86 cd04112 Rab26 Rab26 subfamily. 99.7 2.1E-16 4.6E-21 120.5 17.3 164 20-213 1-167 (191)
87 cd04157 Arl6 Arl6 subfamily. 99.7 7E-17 1.5E-21 119.6 14.1 155 21-205 1-160 (162)
88 cd01860 Rab5_related Rab5-rela 99.7 2.8E-16 6.1E-21 116.5 17.3 160 19-208 1-162 (163)
89 cd01890 LepA LepA subfamily. 99.7 2.4E-17 5.2E-22 124.2 11.7 158 21-208 2-176 (179)
90 TIGR00487 IF-2 translation ini 99.7 1E-16 2.2E-21 140.2 17.2 163 17-206 85-247 (587)
91 cd04156 ARLTS1 ARLTS1 subfamil 99.7 6.9E-17 1.5E-21 119.5 13.8 157 21-206 1-159 (160)
92 PTZ00133 ADP-ribosylation fact 99.7 2.1E-16 4.6E-21 119.6 16.6 162 17-210 15-179 (182)
93 PRK09554 feoB ferrous iron tra 99.7 1.9E-16 4.2E-21 142.2 19.1 164 19-209 3-168 (772)
94 cd04106 Rab23_lke Rab23-like s 99.7 3.2E-16 6.8E-21 116.1 17.3 157 20-206 1-160 (162)
95 cd04166 CysN_ATPS CysN_ATPS su 99.7 8.2E-17 1.8E-21 124.4 14.5 137 21-178 1-166 (208)
96 cd04120 Rab12 Rab12 subfamily. 99.7 3.4E-16 7.5E-21 120.1 17.6 162 20-211 1-165 (202)
97 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 1.3E-16 2.9E-21 119.9 14.8 156 18-205 14-172 (174)
98 cd04138 H_N_K_Ras_like H-Ras/N 99.7 2.3E-16 5E-21 116.6 15.9 157 20-208 2-161 (162)
99 cd04136 Rap_like Rap-like subf 99.7 2.8E-16 6.1E-21 116.4 16.4 157 20-207 2-161 (163)
100 cd04123 Rab21 Rab21 subfamily. 99.7 4.7E-16 1E-20 114.9 17.4 159 20-208 1-161 (162)
101 PLN00223 ADP-ribosylation fact 99.7 4.7E-16 1E-20 117.6 17.7 161 17-210 15-179 (181)
102 PRK12317 elongation factor 1-a 99.7 2.9E-17 6.3E-22 139.8 12.4 143 15-178 2-175 (425)
103 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 3.6E-16 7.8E-21 120.2 17.3 165 20-212 1-171 (201)
104 smart00173 RAS Ras subfamily o 99.7 3.9E-16 8.4E-21 115.9 16.8 159 20-209 1-162 (164)
105 cd01863 Rab18 Rab18 subfamily. 99.7 2.9E-16 6.2E-21 116.2 16.0 158 20-207 1-160 (161)
106 cd04118 Rab24 Rab24 subfamily. 99.7 7.4E-16 1.6E-20 117.6 18.6 163 20-211 1-168 (193)
107 cd04110 Rab35 Rab35 subfamily. 99.7 8.9E-16 1.9E-20 117.9 19.1 163 18-211 5-169 (199)
108 cd01893 Miro1 Miro1 subfamily. 99.7 1.7E-16 3.7E-21 118.3 14.6 159 21-208 2-163 (166)
109 cd04144 Ras2 Ras2 subfamily. 99.7 2.3E-16 5E-21 120.2 15.5 164 21-214 1-168 (190)
110 PRK05306 infB translation init 99.7 1.1E-16 2.3E-21 143.3 15.6 162 17-206 288-449 (787)
111 COG1084 Predicted GTPase [Gene 99.7 3E-16 6.5E-21 124.5 16.3 131 12-152 161-295 (346)
112 COG2262 HflX GTPases [General 99.7 1.8E-16 3.8E-21 129.4 15.4 169 16-211 189-358 (411)
113 cd00154 Rab Rab family. Rab G 99.7 5.9E-16 1.3E-20 113.6 17.0 156 20-205 1-158 (159)
114 cd04101 RabL4 RabL4 (Rab-like4 99.7 2.4E-15 5.3E-20 111.6 20.3 159 20-208 1-163 (164)
115 cd01862 Rab7 Rab7 subfamily. 99.7 1E-15 2.2E-20 114.4 18.3 163 20-211 1-169 (172)
116 cd04115 Rab33B_Rab33A Rab33B/R 99.7 1E-15 2.2E-20 114.6 18.1 164 19-208 2-168 (170)
117 cd04175 Rap1 Rap1 subgroup. T 99.7 5.8E-16 1.3E-20 115.0 16.6 159 19-208 1-162 (164)
118 cd00877 Ran Ran (Ras-related n 99.7 6.6E-16 1.4E-20 115.2 16.7 156 20-210 1-160 (166)
119 cd04155 Arl3 Arl3 subfamily. 99.7 2.3E-16 5E-21 118.2 14.2 159 17-206 12-172 (173)
120 cd04125 RabA_like RabA-like su 99.7 1E-15 2.2E-20 116.4 17.9 161 20-211 1-164 (188)
121 smart00178 SAR Sar1p-like memb 99.7 1.2E-16 2.6E-21 121.2 12.6 163 17-206 15-182 (184)
122 PLN03118 Rab family protein; P 99.7 1.5E-15 3.2E-20 117.7 18.6 170 13-211 8-179 (211)
123 cd04161 Arl2l1_Arl13_like Arl2 99.7 5.3E-16 1.1E-20 115.8 15.6 157 21-205 1-165 (167)
124 COG5019 CDC3 Septin family pro 99.7 2.7E-16 5.9E-21 126.6 14.8 156 16-185 20-204 (373)
125 cd00880 Era_like Era (E. coli 99.7 7.7E-16 1.7E-20 112.8 16.1 162 24-207 1-162 (163)
126 cd04150 Arf1_5_like Arf1-Arf5- 99.7 3.9E-16 8.4E-21 115.6 14.6 155 20-205 1-157 (159)
127 CHL00071 tufA elongation facto 99.7 4E-16 8.7E-21 132.0 16.4 142 14-178 7-163 (409)
128 cd04132 Rho4_like Rho4-like su 99.7 6.2E-16 1.3E-20 117.4 15.8 164 20-212 1-170 (187)
129 PLN03071 GTP-binding nuclear p 99.7 7.2E-16 1.6E-20 120.0 16.5 160 17-211 11-174 (219)
130 PRK10512 selenocysteinyl-tRNA- 99.7 3.5E-16 7.6E-21 137.7 16.4 167 20-211 1-168 (614)
131 cd00879 Sar1 Sar1 subfamily. 99.7 2.8E-16 6.1E-21 119.6 13.8 165 17-207 17-189 (190)
132 cd04151 Arl1 Arl1 subfamily. 99.7 2.9E-16 6.3E-21 116.0 13.5 155 21-206 1-157 (158)
133 TIGR00475 selB selenocysteine- 99.7 4.5E-16 9.7E-21 136.6 16.8 168 20-212 1-169 (581)
134 cd01896 DRG The developmentall 99.7 5.4E-16 1.2E-20 121.7 15.5 87 21-114 2-88 (233)
135 PTZ00369 Ras-like protein; Pro 99.7 1.3E-15 2.9E-20 115.9 17.3 163 18-211 4-169 (189)
136 cd04111 Rab39 Rab39 subfamily. 99.7 2.2E-15 4.7E-20 116.7 18.3 164 19-211 2-168 (211)
137 cd04117 Rab15 Rab15 subfamily. 99.7 7.6E-16 1.6E-20 114.3 15.1 157 20-207 1-160 (161)
138 KOG1489 Predicted GTP-binding 99.7 1.1E-16 2.4E-21 126.2 10.9 166 18-206 195-364 (366)
139 PLN03127 Elongation factor Tu; 99.7 6.1E-16 1.3E-20 131.7 16.3 171 14-210 56-253 (447)
140 PRK15467 ethanolamine utilizat 99.7 1.4E-16 2.9E-21 117.9 10.6 147 21-211 3-149 (158)
141 cd04168 TetM_like Tet(M)-like 99.7 5.8E-16 1.3E-20 121.7 14.7 135 21-183 1-151 (237)
142 PLN03110 Rab GTPase; Provision 99.7 3.3E-15 7.2E-20 116.1 18.7 163 17-210 10-175 (216)
143 cd04165 GTPBP1_like GTPBP1-lik 99.7 4.7E-16 1E-20 121.1 13.9 163 21-206 1-220 (224)
144 cd04116 Rab9 Rab9 subfamily. 99.7 1.6E-15 3.6E-20 113.3 16.3 161 17-206 3-168 (170)
145 cd00157 Rho Rho (Ras homology) 99.7 1.5E-15 3.2E-20 113.4 15.7 162 20-206 1-170 (171)
146 cd04139 RalA_RalB RalA/RalB su 99.7 3E-15 6.5E-20 110.9 17.0 160 20-209 1-162 (164)
147 cd04148 RGK RGK subfamily. Th 99.7 2E-15 4.4E-20 117.7 16.8 162 20-211 1-165 (221)
148 cd00878 Arf_Arl Arf (ADP-ribos 99.7 1.1E-15 2.3E-20 112.9 14.5 154 21-205 1-156 (158)
149 KOG2655 Septin family protein 99.7 6E-16 1.3E-20 125.5 13.8 156 18-187 20-201 (366)
150 cd04114 Rab30 Rab30 subfamily. 99.7 4.6E-15 9.9E-20 110.7 17.6 160 18-208 6-168 (169)
151 cd01886 EF-G Elongation factor 99.7 8.1E-16 1.8E-20 123.0 14.2 115 21-152 1-131 (270)
152 cd04176 Rap2 Rap2 subgroup. T 99.7 2E-15 4.3E-20 112.0 15.3 157 20-207 2-161 (163)
153 COG0370 FeoB Fe2+ transport sy 99.7 1.2E-15 2.7E-20 131.6 16.0 165 18-213 2-168 (653)
154 cd04126 Rab20 Rab20 subfamily. 99.7 9.6E-16 2.1E-20 119.1 14.1 113 20-151 1-114 (220)
155 cd01892 Miro2 Miro2 subfamily. 99.7 4E-15 8.7E-20 111.3 16.9 163 17-209 2-166 (169)
156 PRK12735 elongation factor Tu; 99.7 1.4E-15 3.1E-20 128.1 16.0 167 16-209 9-203 (396)
157 PRK12736 elongation factor Tu; 99.7 1.4E-15 3E-20 128.1 15.8 173 16-211 9-203 (394)
158 CHL00189 infB translation init 99.7 1.2E-15 2.5E-20 135.6 15.9 162 17-208 242-409 (742)
159 cd00876 Ras Ras family. The R 99.7 3.1E-15 6.8E-20 110.2 15.8 156 21-207 1-159 (160)
160 PLN03108 Rab family protein; P 99.7 6.1E-15 1.3E-19 114.2 18.1 161 18-209 5-168 (210)
161 cd04159 Arl10_like Arl10-like 99.7 1.3E-15 2.7E-20 111.9 13.5 155 22-206 2-158 (159)
162 KOG1423 Ras-like GTPase ERA [C 99.7 7.8E-16 1.7E-20 120.9 12.7 184 17-209 70-271 (379)
163 cd04147 Ras_dva Ras-dva subfam 99.7 3.9E-15 8.5E-20 114.2 16.5 160 21-210 1-164 (198)
164 cd01874 Cdc42 Cdc42 subfamily. 99.7 7.7E-16 1.7E-20 115.8 12.3 161 20-206 2-172 (175)
165 cd04135 Tc10 TC10 subfamily. 99.7 1.6E-15 3.5E-20 113.7 13.8 164 20-207 1-172 (174)
166 PF00025 Arf: ADP-ribosylation 99.7 2.4E-15 5.1E-20 113.2 14.7 162 16-207 11-174 (175)
167 cd01875 RhoG RhoG subfamily. 99.7 3.7E-15 8E-20 113.7 15.8 168 18-210 2-178 (191)
168 cd01871 Rac1_like Rac1-like su 99.7 6E-15 1.3E-19 110.9 16.6 164 19-206 1-172 (174)
169 cd04134 Rho3 Rho3 subfamily. 99.7 7.2E-16 1.6E-20 117.4 11.7 167 20-211 1-176 (189)
170 TIGR01394 TypA_BipA GTP-bindin 99.7 1.4E-15 3E-20 133.4 15.0 167 20-212 2-194 (594)
171 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.7 8.2E-15 1.8E-19 110.8 17.3 166 17-207 3-178 (182)
172 cd04177 RSR1 RSR1 subgroup. R 99.7 4.8E-15 1E-19 110.6 15.9 157 20-206 2-161 (168)
173 smart00174 RHO Rho (Ras homolo 99.7 5E-15 1.1E-19 111.0 15.9 162 22-208 1-171 (174)
174 cd04128 Spg1 Spg1p. Spg1p (se 99.7 8.2E-15 1.8E-19 110.9 17.1 163 20-210 1-167 (182)
175 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.7 1.7E-14 3.6E-19 112.9 19.2 171 17-211 11-190 (232)
176 PRK00049 elongation factor Tu; 99.7 6.5E-15 1.4E-19 124.1 17.6 171 16-209 9-203 (396)
177 cd04146 RERG_RasL11_like RERG/ 99.7 3.3E-15 7.1E-20 111.1 14.0 160 21-209 1-164 (165)
178 TIGR00231 small_GTP small GTP- 99.7 5.2E-15 1.1E-19 108.2 14.9 154 20-205 2-160 (161)
179 KOG0084 GTPase Rab1/YPT1, smal 99.7 6E-15 1.3E-19 108.9 14.9 167 17-213 7-176 (205)
180 PRK09866 hypothetical protein; 99.7 7E-15 1.5E-19 126.8 17.6 121 69-206 230-350 (741)
181 KOG0092 GTPase Rab5/YPT51 and 99.7 1.6E-15 3.5E-20 111.5 11.6 166 18-212 4-170 (200)
182 KOG1547 Septin CDC10 and relat 99.7 4.9E-15 1.1E-19 112.7 14.5 156 19-188 46-228 (336)
183 PF10662 PduV-EutP: Ethanolami 99.7 7.5E-16 1.6E-20 110.1 9.6 141 20-205 2-142 (143)
184 TIGR02528 EutP ethanolamine ut 99.7 1.9E-15 4E-20 109.7 11.9 140 21-205 2-141 (142)
185 PRK05124 cysN sulfate adenylyl 99.7 9.1E-16 2E-20 131.7 11.8 145 12-177 20-195 (474)
186 cd04137 RheB Rheb (Ras Homolog 99.7 2.2E-14 4.7E-19 108.2 18.0 165 20-215 2-169 (180)
187 cd04131 Rnd Rnd subfamily. Th 99.7 2.4E-14 5.2E-19 107.9 17.9 164 20-207 2-174 (178)
188 cd01870 RhoA_like RhoA-like su 99.7 2.2E-15 4.8E-20 113.0 12.1 165 20-208 2-174 (175)
189 TIGR00485 EF-Tu translation el 99.7 7.7E-15 1.7E-19 123.7 16.5 172 16-209 9-201 (394)
190 PF05049 IIGP: Interferon-indu 99.6 6.6E-16 1.4E-20 126.9 9.6 178 17-214 33-223 (376)
191 TIGR00491 aIF-2 translation in 99.6 2.9E-15 6.2E-20 131.0 14.0 115 19-151 4-135 (590)
192 KOG0073 GTP-binding ADP-ribosy 99.6 2.2E-14 4.8E-19 102.7 15.9 143 18-184 15-159 (185)
193 cd04133 Rop_like Rop subfamily 99.6 3.5E-14 7.6E-19 106.8 17.9 167 20-209 2-173 (176)
194 TIGR00483 EF-1_alpha translati 99.6 2.8E-15 6E-20 127.7 13.5 170 16-207 4-217 (426)
195 cd04169 RF3 RF3 subfamily. Pe 99.6 1.1E-14 2.3E-19 116.4 16.0 117 19-152 2-138 (267)
196 cd04102 RabL3 RabL3 (Rab-like3 99.6 3E-14 6.6E-19 109.2 17.8 172 20-211 1-199 (202)
197 PRK10218 GTP-binding protein; 99.6 8.7E-15 1.9E-19 128.4 16.2 164 18-212 4-198 (607)
198 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.6 1.1E-14 2.3E-19 107.4 13.6 166 16-211 19-187 (221)
199 cd04143 Rhes_like Rhes_like su 99.6 2.3E-14 5E-19 113.4 16.7 162 20-210 1-172 (247)
200 PRK05506 bifunctional sulfate 99.6 3.3E-15 7.1E-20 132.9 13.2 143 15-178 20-193 (632)
201 TIGR02034 CysN sulfate adenyly 99.6 4.3E-15 9.3E-20 125.6 13.0 138 20-178 1-169 (406)
202 cd04130 Wrch_1 Wrch-1 subfamil 99.6 3.6E-15 7.8E-20 111.9 11.2 161 20-205 1-170 (173)
203 KOG1191 Mitochondrial GTPase [ 99.6 6.2E-15 1.3E-19 122.4 13.1 132 17-152 266-404 (531)
204 TIGR03680 eif2g_arch translati 99.6 6.4E-15 1.4E-19 124.6 13.2 168 17-210 2-197 (406)
205 cd01883 EF1_alpha Eukaryotic e 99.6 4E-15 8.6E-20 115.9 11.1 136 21-177 1-174 (219)
206 COG0532 InfB Translation initi 99.6 9.7E-15 2.1E-19 122.9 13.7 164 18-208 4-169 (509)
207 TIGR00437 feoB ferrous iron tr 99.6 2.5E-14 5.5E-19 125.8 17.0 154 26-208 1-154 (591)
208 TIGR01393 lepA GTP-binding pro 99.6 8.8E-15 1.9E-19 128.6 14.1 164 19-212 3-183 (595)
209 cd04170 EF-G_bact Elongation f 99.6 1.8E-14 3.9E-19 115.6 14.7 115 21-152 1-131 (268)
210 smart00176 RAN Ran (Ras-relate 99.6 2.1E-14 4.5E-19 110.1 14.1 152 25-211 1-156 (200)
211 cd01885 EF2 EF2 (for archaea a 99.6 1.5E-14 3.2E-19 112.4 13.3 115 20-150 1-138 (222)
212 PRK04000 translation initiatio 99.6 1.5E-14 3.2E-19 122.4 14.3 170 16-210 6-202 (411)
213 KOG0078 GTP-binding protein SE 99.6 8.3E-14 1.8E-18 104.2 16.5 165 15-210 8-175 (207)
214 COG1163 DRG Predicted GTPase [ 99.6 6.3E-15 1.4E-19 116.8 10.9 96 12-114 56-151 (365)
215 PTZ00141 elongation factor 1- 99.6 7.6E-15 1.6E-19 125.1 12.3 142 16-178 4-183 (446)
216 smart00053 DYNc Dynamin, GTPas 99.6 5E-14 1.1E-18 110.2 15.6 132 17-153 24-208 (240)
217 KOG0080 GTPase Rab18, small G 99.6 2.4E-14 5.1E-19 102.2 12.3 121 17-150 9-130 (209)
218 PLN03126 Elongation factor Tu; 99.6 8E-14 1.7E-18 119.5 18.0 140 15-177 77-231 (478)
219 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 1.1E-13 2.4E-18 107.6 17.0 165 20-209 2-176 (222)
220 PRK04004 translation initiatio 99.6 3.3E-14 7.2E-19 124.7 15.4 115 18-150 5-136 (586)
221 PRK05433 GTP-binding protein L 99.6 3.5E-14 7.6E-19 124.9 15.6 166 17-212 5-187 (600)
222 KOG1145 Mitochondrial translat 99.6 3.1E-14 6.7E-19 119.6 14.0 162 17-205 151-312 (683)
223 cd04103 Centaurin_gamma Centau 99.6 4.7E-14 1E-18 104.3 13.4 153 20-206 1-156 (158)
224 PTZ00132 GTP-binding nuclear p 99.6 1.2E-13 2.6E-18 107.3 16.2 163 16-213 6-172 (215)
225 cd04105 SR_beta Signal recogni 99.6 7.9E-14 1.7E-18 107.3 14.9 117 20-153 1-125 (203)
226 cd00882 Ras_like_GTPase Ras-li 99.6 7.7E-14 1.7E-18 101.0 14.2 153 24-205 1-156 (157)
227 PF08477 Miro: Miro-like prote 99.6 7.5E-15 1.6E-19 103.3 8.4 116 21-148 1-119 (119)
228 cd04167 Snu114p Snu114p subfam 99.6 7.4E-15 1.6E-19 113.9 9.0 114 21-150 2-136 (213)
229 PRK00007 elongation factor G; 99.6 5.4E-14 1.2E-18 126.2 15.0 120 16-152 7-142 (693)
230 PF00350 Dynamin_N: Dynamin fa 99.6 1.9E-14 4.1E-19 107.4 10.0 115 22-147 1-168 (168)
231 TIGR00484 EF-G translation elo 99.6 1.1E-13 2.4E-18 124.3 16.4 120 16-152 7-142 (689)
232 cd04129 Rho2 Rho2 subfamily. 99.6 3.4E-13 7.3E-18 102.5 16.8 168 20-211 2-175 (187)
233 PF04670 Gtr1_RagA: Gtr1/RagA 99.6 8.4E-14 1.8E-18 108.3 13.4 160 21-190 1-162 (232)
234 PF00071 Ras: Ras family; Int 99.6 1.4E-13 3.1E-18 101.9 13.6 156 21-207 1-159 (162)
235 PRK12739 elongation factor G; 99.6 1E-13 2.2E-18 124.5 15.1 120 16-152 5-140 (691)
236 cd01873 RhoBTB RhoBTB subfamil 99.6 5.4E-13 1.2E-17 102.0 17.0 166 19-206 2-193 (195)
237 KOG0462 Elongation factor-type 99.5 7.5E-14 1.6E-18 117.3 12.4 170 16-215 57-241 (650)
238 COG2229 Predicted GTPase [Gene 99.5 1E-12 2.2E-17 96.4 16.4 122 17-153 8-137 (187)
239 PRK00741 prfC peptide chain re 99.5 1.7E-13 3.6E-18 118.9 14.6 119 17-152 8-146 (526)
240 TIGR00503 prfC peptide chain r 99.5 3E-13 6.4E-18 117.4 14.1 119 17-152 9-147 (527)
241 KOG0098 GTPase Rab2, small G p 99.5 2E-12 4.2E-17 94.8 15.9 162 17-207 4-166 (216)
242 PTZ00327 eukaryotic translatio 99.5 2.2E-13 4.9E-18 116.0 12.6 171 16-211 31-235 (460)
243 KOG0087 GTPase Rab11/YPT3, sma 99.5 1E-12 2.2E-17 98.2 14.3 119 17-151 12-133 (222)
244 PRK13351 elongation factor G; 99.5 2.5E-13 5.5E-18 122.1 13.5 127 17-163 6-148 (687)
245 TIGR02836 spore_IV_A stage IV 99.5 8.9E-13 1.9E-17 108.7 15.0 126 17-150 15-193 (492)
246 PLN00043 elongation factor 1-a 99.5 5E-13 1.1E-17 114.0 14.0 142 16-178 4-183 (447)
247 PLN00023 GTP-binding protein; 99.5 8E-13 1.7E-17 106.8 14.0 124 13-151 15-165 (334)
248 COG5256 TEF1 Translation elong 99.5 5.4E-13 1.2E-17 109.2 13.0 144 15-179 3-182 (428)
249 COG1100 GTPase SAR1 and relate 99.5 2.9E-12 6.2E-17 99.6 16.5 121 19-153 5-127 (219)
250 KOG0394 Ras-related GTPase [Ge 99.5 1.5E-12 3.3E-17 95.1 12.7 171 17-213 7-182 (210)
251 KOG0070 GTP-binding ADP-ribosy 99.5 1.5E-12 3.2E-17 95.6 12.2 165 16-211 14-180 (181)
252 KOG0095 GTPase Rab30, small G 99.5 3.4E-12 7.4E-17 90.2 13.3 154 19-205 7-165 (213)
253 KOG0079 GTP-binding protein H- 99.5 3.3E-12 7.2E-17 90.1 13.0 160 20-210 9-170 (198)
254 PRK09602 translation-associate 99.5 2.6E-12 5.7E-17 107.8 14.8 89 20-114 2-113 (396)
255 cd01882 BMS1 Bms1. Bms1 is an 99.4 1.7E-11 3.8E-16 95.7 18.1 160 16-207 36-199 (225)
256 PTZ00416 elongation factor 2; 99.4 8.8E-13 1.9E-17 120.4 12.3 119 16-150 16-157 (836)
257 cd01899 Ygr210 Ygr210 subfamil 99.4 3.4E-12 7.4E-17 104.1 13.1 87 22-114 1-110 (318)
258 COG1217 TypA Predicted membran 99.4 7.1E-12 1.5E-16 103.8 14.0 174 17-215 3-201 (603)
259 KOG1490 GTP-binding protein CR 99.4 8.8E-12 1.9E-16 104.1 14.1 134 12-153 161-297 (620)
260 PF09439 SRPRB: Signal recogni 99.4 2.8E-12 6E-17 95.8 9.8 120 19-153 3-128 (181)
261 COG4917 EutP Ethanolamine util 99.4 1.8E-12 3.9E-17 89.0 8.0 142 20-206 2-143 (148)
262 PLN00116 translation elongatio 99.4 2.5E-12 5.4E-17 117.6 11.4 119 16-150 16-163 (843)
263 KOG0448 Mitofusin 1 GTPase, in 99.4 3.3E-12 7.1E-17 110.0 10.8 131 17-163 107-287 (749)
264 TIGR00490 aEF-2 translation el 99.4 2.1E-12 4.6E-17 116.4 10.0 119 16-151 16-152 (720)
265 PTZ00258 GTP-binding protein; 99.4 4.9E-12 1.1E-16 105.3 11.3 92 16-113 18-125 (390)
266 KOG0075 GTP-binding ADP-ribosy 99.4 3.7E-12 8E-17 89.8 8.8 164 17-210 18-183 (186)
267 cd01900 YchF YchF subfamily. 99.4 3.8E-12 8.2E-17 101.6 10.1 86 22-113 1-102 (274)
268 KOG0093 GTPase Rab3, small G p 99.4 1.5E-10 3.1E-15 81.8 16.3 162 19-210 21-184 (193)
269 KOG0091 GTPase Rab39, small G 99.4 1.4E-11 3.1E-16 88.4 11.1 162 19-210 8-174 (213)
270 PRK09601 GTP-binding protein Y 99.4 7.3E-12 1.6E-16 103.1 11.1 88 20-113 3-106 (364)
271 KOG2486 Predicted GTPase [Gene 99.4 3.2E-12 6.9E-17 99.5 8.3 176 16-208 133-315 (320)
272 COG0480 FusA Translation elong 99.4 2.4E-11 5.3E-16 107.7 15.0 121 16-153 7-144 (697)
273 COG3276 SelB Selenocysteine-sp 99.3 2.8E-11 6.1E-16 99.9 13.9 159 21-208 2-161 (447)
274 COG0050 TufB GTPases - transla 99.3 1.7E-11 3.7E-16 96.2 11.2 178 16-215 9-207 (394)
275 KOG0395 Ras-related GTPase [Ge 99.3 7.5E-11 1.6E-15 89.9 14.3 163 19-210 3-166 (196)
276 cd01851 GBP Guanylate-binding 99.3 5.8E-10 1.2E-14 87.1 19.2 129 16-149 4-146 (224)
277 KOG0086 GTPase Rab4, small G p 99.3 8.5E-11 1.8E-15 83.5 12.5 161 19-208 9-170 (214)
278 KOG0071 GTP-binding ADP-ribosy 99.3 1.1E-10 2.4E-15 81.8 12.6 160 17-208 15-177 (180)
279 KOG0088 GTPase Rab21, small G 99.3 1.6E-11 3.5E-16 87.6 8.6 167 17-212 11-178 (218)
280 PRK12740 elongation factor G; 99.3 4.4E-11 9.5E-16 107.5 13.2 111 25-152 1-127 (668)
281 PRK13768 GTPase; Provisional 99.3 4.1E-11 8.9E-16 95.2 11.6 134 70-212 98-250 (253)
282 KOG0074 GTP-binding ADP-ribosy 99.3 1.9E-11 4.2E-16 85.7 7.6 123 13-153 11-135 (185)
283 PRK07560 elongation factor EF- 99.3 8.6E-11 1.9E-15 106.3 13.2 119 17-151 18-153 (731)
284 KOG0410 Predicted GTP binding 99.3 4.4E-11 9.6E-16 95.1 9.9 163 17-210 176-342 (410)
285 KOG0458 Elongation factor 1 al 99.3 1.7E-10 3.6E-15 98.1 13.9 144 14-178 172-352 (603)
286 COG2895 CysN GTPases - Sulfate 99.3 9.7E-11 2.1E-15 94.2 11.7 143 16-179 3-176 (431)
287 COG0481 LepA Membrane GTPase L 99.3 3.4E-11 7.5E-16 100.1 9.2 170 16-215 6-192 (603)
288 KOG0076 GTP-binding ADP-ribosy 99.2 4.1E-11 8.9E-16 86.9 8.1 171 17-211 15-189 (197)
289 COG5192 BMS1 GTP-binding prote 99.2 2.7E-10 5.8E-15 96.7 13.8 173 14-216 64-242 (1077)
290 KOG1144 Translation initiation 99.2 7.8E-11 1.7E-15 102.3 10.6 175 19-211 475-689 (1064)
291 cd01858 NGP_1 NGP-1. Autoanti 99.2 3.6E-11 7.8E-16 88.8 7.3 57 18-79 101-157 (157)
292 PRK09435 membrane ATPase/prote 99.2 3.7E-10 8.1E-15 92.4 13.7 111 68-209 148-260 (332)
293 KOG0461 Selenocysteine-specifi 99.2 1.1E-09 2.4E-14 88.0 15.0 174 17-213 5-197 (522)
294 cd04178 Nucleostemin_like Nucl 99.2 6.9E-11 1.5E-15 88.4 7.1 57 18-79 116-172 (172)
295 KOG1707 Predicted Ras related/ 99.2 2.1E-10 4.6E-15 97.5 10.7 174 16-216 6-182 (625)
296 KOG0090 Signal recognition par 99.2 3.2E-10 7E-15 85.2 9.8 120 19-153 38-161 (238)
297 PRK14845 translation initiatio 99.2 5.2E-10 1.1E-14 103.1 12.8 103 31-151 473-592 (1049)
298 COG4108 PrfC Peptide chain rel 99.1 9.7E-10 2.1E-14 90.8 12.9 119 17-152 10-148 (528)
299 KOG1954 Endocytosis/signaling 99.1 8.1E-10 1.8E-14 89.5 11.8 139 17-163 56-235 (532)
300 COG5257 GCD11 Translation init 99.1 4.8E-10 1E-14 89.2 9.9 175 17-216 8-209 (415)
301 KOG1486 GTP-binding protein DR 99.1 2.5E-10 5.4E-15 87.9 7.9 111 16-135 59-169 (364)
302 KOG3859 Septins (P-loop GTPase 99.1 4.9E-10 1.1E-14 87.5 8.5 155 19-187 42-219 (406)
303 PRK09563 rbgA GTPase YlqF; Rev 99.1 7.9E-10 1.7E-14 89.5 9.8 67 17-88 119-185 (287)
304 PF03193 DUF258: Protein of un 99.1 8.1E-11 1.8E-15 86.2 3.6 60 20-83 36-101 (161)
305 cd01857 HSR1_MMR1 HSR1/MMR1. 99.1 3.8E-10 8.1E-15 81.8 7.1 62 14-80 78-139 (141)
306 cd01855 YqeH YqeH. YqeH is an 99.1 2.9E-10 6.2E-15 86.6 6.0 57 19-79 127-190 (190)
307 KOG4252 GTP-binding protein [S 99.1 1.6E-10 3.4E-15 84.3 4.1 122 16-153 17-140 (246)
308 cd01849 YlqF_related_GTPase Yl 99.0 6.9E-10 1.5E-14 81.8 7.1 58 17-79 98-155 (155)
309 KOG0460 Mitochondrial translat 99.0 2.1E-09 4.4E-14 86.2 10.1 178 16-215 51-251 (449)
310 KOG0393 Ras-related small GTPa 99.0 1.3E-09 2.9E-14 81.9 8.1 166 19-208 4-178 (198)
311 TIGR03596 GTPase_YlqF ribosome 99.0 2.1E-09 4.6E-14 86.5 9.6 66 17-87 116-181 (276)
312 KOG3883 Ras family small GTPas 99.0 8.1E-09 1.7E-13 73.6 11.1 124 16-153 6-134 (198)
313 KOG0081 GTPase Rab27, small G 99.0 2.5E-09 5.4E-14 76.6 8.3 167 20-211 10-187 (219)
314 KOG0083 GTPase Rab26/Rab37, sm 99.0 1.6E-09 3.5E-14 75.3 7.0 163 24-215 2-166 (192)
315 KOG1532 GTPase XAB1, interacts 99.0 8.4E-09 1.8E-13 80.6 11.5 134 69-213 116-268 (366)
316 KOG0072 GTP-binding ADP-ribosy 99.0 5.1E-10 1.1E-14 78.8 4.0 164 17-211 16-181 (182)
317 KOG0447 Dynamin-like GTP bindi 99.0 2.8E-08 6.1E-13 84.4 14.7 133 17-152 306-494 (980)
318 PTZ00099 rab6; Provisional 99.0 4.5E-08 9.8E-13 73.6 14.3 116 69-212 29-145 (176)
319 PRK12288 GTPase RsgA; Reviewed 99.0 2.6E-09 5.7E-14 88.3 8.3 59 21-83 207-271 (347)
320 KOG0077 Vesicle coat complex C 99.0 8.2E-09 1.8E-13 74.5 9.5 119 17-153 18-137 (193)
321 cd01856 YlqF YlqF. Proteins o 98.9 3E-09 6.4E-14 79.7 7.5 58 17-79 113-170 (171)
322 TIGR03348 VI_IcmF type VI secr 98.9 8.9E-09 1.9E-13 97.6 11.9 126 20-153 112-259 (1169)
323 COG0012 Predicted GTPase, prob 98.9 3.7E-09 8E-14 86.3 8.1 89 20-114 3-108 (372)
324 KOG0097 GTPase Rab14, small G 98.9 1.1E-07 2.5E-12 66.8 14.3 121 18-152 10-131 (215)
325 COG1161 Predicted GTPases [Gen 98.9 2.2E-09 4.8E-14 88.1 6.7 63 17-84 130-192 (322)
326 TIGR03597 GTPase_YqeH ribosome 98.9 5.8E-09 1.3E-13 87.0 8.1 121 20-150 155-279 (360)
327 TIGR00092 GTP-binding protein 98.9 8.5E-09 1.8E-13 85.2 8.9 89 20-113 3-107 (368)
328 PRK12289 GTPase RsgA; Reviewed 98.9 3.1E-09 6.8E-14 87.9 6.0 60 21-84 174-239 (352)
329 KOG1491 Predicted GTP-binding 98.9 7.1E-09 1.5E-13 83.2 7.7 90 18-113 19-124 (391)
330 KOG3886 GTP-binding protein [S 98.9 1.6E-08 3.5E-13 77.1 8.6 128 19-153 4-132 (295)
331 COG1162 Predicted GTPases [Gen 98.9 9.8E-09 2.1E-13 82.0 7.9 60 20-83 165-230 (301)
332 TIGR00750 lao LAO/AO transport 98.9 4.1E-08 8.8E-13 80.1 11.7 25 17-41 32-56 (300)
333 TIGR00157 ribosome small subun 98.9 6E-09 1.3E-13 82.4 6.5 59 20-83 121-185 (245)
334 PF00448 SRP54: SRP54-type pro 98.8 1.5E-08 3.4E-13 77.3 8.2 95 69-188 84-178 (196)
335 TIGR01425 SRP54_euk signal rec 98.8 3.4E-07 7.3E-12 77.4 16.9 123 17-151 98-253 (429)
336 PF03029 ATP_bind_1: Conserved 98.8 4.1E-09 8.8E-14 82.9 4.8 130 70-208 92-236 (238)
337 KOG0468 U5 snRNP-specific prot 98.8 5.4E-08 1.2E-12 84.3 11.6 118 17-150 126-262 (971)
338 KOG1424 Predicted GTP-binding 98.8 5.9E-09 1.3E-13 87.7 5.3 62 17-83 312-373 (562)
339 KOG1487 GTP-binding protein DR 98.8 1E-08 2.3E-13 79.4 6.0 131 11-150 51-182 (358)
340 cd01859 MJ1464 MJ1464. This f 98.8 3.3E-08 7.2E-13 72.8 7.6 57 18-79 100-156 (156)
341 PRK13796 GTPase YqeH; Provisio 98.7 1.8E-08 3.9E-13 84.2 6.3 59 19-81 160-222 (365)
342 cd01854 YjeQ_engC YjeQ/EngC. 98.7 5.2E-08 1.1E-12 78.9 8.8 59 20-82 162-226 (287)
343 PRK00098 GTPase RsgA; Reviewed 98.7 4.5E-08 9.8E-13 79.7 8.4 60 19-82 164-229 (298)
344 KOG0464 Elongation factor G [T 98.7 1.3E-08 2.8E-13 83.8 5.1 120 16-152 34-169 (753)
345 cd00066 G-alpha G protein alph 98.7 6.5E-07 1.4E-11 73.6 14.1 85 54-150 147-241 (317)
346 COG1419 FlhF Flagellar GTP-bin 98.7 1.8E-07 3.9E-12 77.6 10.7 144 18-187 202-375 (407)
347 KOG0467 Translation elongation 98.7 1.4E-07 3E-12 82.9 10.3 118 14-150 4-137 (887)
348 TIGR00073 hypB hydrogenase acc 98.7 7.7E-08 1.7E-12 74.3 7.5 26 17-42 20-45 (207)
349 PRK11889 flhF flagellar biosyn 98.7 3.6E-07 7.9E-12 76.0 11.5 144 18-186 240-413 (436)
350 PRK12727 flagellar biosynthesi 98.7 7.7E-07 1.7E-11 76.7 13.8 175 17-219 348-553 (559)
351 KOG0465 Mitochondrial elongati 98.6 1.3E-07 2.8E-12 81.2 7.7 123 14-153 34-172 (721)
352 PRK14723 flhF flagellar biosyn 98.6 5.6E-07 1.2E-11 80.8 12.0 163 19-205 185-379 (767)
353 COG3523 IcmF Type VI protein s 98.6 4.5E-07 9.8E-12 84.5 11.3 126 20-153 126-272 (1188)
354 TIGR00064 ftsY signal recognit 98.6 1.7E-06 3.6E-11 69.5 12.9 96 67-185 153-252 (272)
355 PRK14974 cell division protein 98.6 1.5E-06 3.2E-11 71.6 12.7 94 68-186 222-315 (336)
356 COG1703 ArgK Putative periplas 98.6 2.7E-07 5.9E-12 73.3 8.0 109 69-211 144-256 (323)
357 PRK10416 signal recognition pa 98.6 2.7E-06 6E-11 69.7 14.0 147 17-186 112-295 (318)
358 PRK14721 flhF flagellar biosyn 98.6 8.7E-07 1.9E-11 74.9 11.1 144 17-186 189-362 (420)
359 COG5258 GTPBP1 GTPase [General 98.5 1.6E-06 3.4E-11 71.1 11.7 174 15-209 113-339 (527)
360 smart00275 G_alpha G protein a 98.5 3.9E-06 8.5E-11 69.6 14.3 85 54-150 170-264 (342)
361 KOG2485 Conserved ATP/GTP bind 98.5 4E-07 8.7E-12 72.6 7.5 73 16-89 140-216 (335)
362 PRK14722 flhF flagellar biosyn 98.5 3.9E-07 8.4E-12 75.8 7.7 150 17-186 135-317 (374)
363 PF03308 ArgK: ArgK protein; 98.5 1.3E-07 2.9E-12 73.9 4.6 104 68-210 121-231 (266)
364 cd03112 CobW_like The function 98.5 9.9E-07 2.1E-11 65.1 9.0 22 21-42 2-23 (158)
365 PRK06995 flhF flagellar biosyn 98.5 2E-06 4.2E-11 73.9 11.7 162 19-206 256-448 (484)
366 PRK12726 flagellar biosynthesi 98.5 1.2E-06 2.6E-11 72.6 9.7 145 17-186 204-378 (407)
367 PRK05703 flhF flagellar biosyn 98.5 1.1E-06 2.4E-11 74.8 9.7 96 68-187 299-394 (424)
368 PRK12724 flagellar biosynthesi 98.5 1.4E-06 3E-11 73.3 10.0 143 19-185 223-394 (432)
369 KOG0082 G-protein alpha subuni 98.4 1.5E-05 3.2E-10 65.5 14.2 85 54-150 181-275 (354)
370 PRK00771 signal recognition pa 98.4 6.7E-06 1.4E-10 70.1 12.2 92 69-185 176-267 (437)
371 PRK10463 hydrogenase nickel in 98.4 5.2E-07 1.1E-11 72.4 5.0 26 17-42 102-127 (290)
372 KOG1673 Ras GTPases [General f 98.4 1.1E-05 2.4E-10 58.0 10.9 164 15-204 16-181 (205)
373 PRK06731 flhF flagellar biosyn 98.3 6.6E-06 1.4E-10 65.8 10.8 144 18-186 74-247 (270)
374 PRK12723 flagellar biosynthesi 98.3 1.2E-05 2.6E-10 67.5 12.8 96 67-186 253-348 (388)
375 KOG2484 GTPase [General functi 98.3 3.7E-07 8.1E-12 74.9 3.6 63 16-83 249-311 (435)
376 KOG3887 Predicted small GTPase 98.3 9.1E-06 2E-10 62.8 10.5 125 19-153 27-151 (347)
377 KOG2423 Nucleolar GTPase [Gene 98.3 4.3E-07 9.2E-12 74.6 2.3 64 16-84 304-367 (572)
378 TIGR00101 ureG urease accessor 98.2 3.5E-05 7.6E-10 59.1 12.4 23 20-42 2-24 (199)
379 PRK10867 signal recognition pa 98.2 5.3E-05 1.2E-09 64.5 14.3 70 69-150 184-253 (433)
380 TIGR00959 ffh signal recogniti 98.2 6.2E-05 1.4E-09 64.1 13.1 71 68-150 182-252 (428)
381 KOG1143 Predicted translation 98.1 9.9E-06 2.2E-10 66.3 7.4 142 16-178 164-337 (591)
382 KOG0446 Vacuolar sorting prote 98.1 2.2E-06 4.7E-11 76.4 3.8 133 16-153 26-215 (657)
383 KOG0096 GTPase Ran/TC4/GSP1 (n 98.1 2.5E-05 5.5E-10 58.0 8.6 119 17-151 8-128 (216)
384 COG1116 TauB ABC-type nitrate/ 98.1 3.1E-05 6.7E-10 60.4 9.4 27 19-45 29-55 (248)
385 KOG0466 Translation initiation 98.1 2.5E-06 5.5E-11 67.9 2.6 170 18-215 37-247 (466)
386 COG1121 ZnuC ABC-type Mn/Zn tr 98.1 1.9E-05 4.1E-10 62.2 7.4 24 20-43 31-54 (254)
387 KOG4423 GTP-binding protein-li 98.0 4E-07 8.7E-12 67.2 -2.0 169 19-216 25-201 (229)
388 PRK01889 GTPase RsgA; Reviewed 98.0 4.3E-06 9.3E-11 69.8 3.8 60 19-82 195-260 (356)
389 cd01858 NGP_1 NGP-1. Autoanti 98.0 2.2E-05 4.8E-10 57.8 6.7 91 100-209 5-95 (157)
390 cd03115 SRP The signal recogni 98.0 0.00028 6E-09 52.7 12.7 73 68-152 82-154 (173)
391 KOG0459 Polypeptide release fa 98.0 1.6E-05 3.4E-10 65.7 6.2 145 15-177 75-254 (501)
392 cd03229 ABC_Class3 This class 98.0 3.7E-05 8.1E-10 57.8 7.8 27 18-44 25-51 (178)
393 COG3839 MalK ABC-type sugar tr 97.9 4.7E-05 1E-09 62.5 7.9 26 20-45 30-55 (338)
394 COG0541 Ffh Signal recognition 97.9 0.00013 2.8E-09 61.2 10.5 70 69-150 183-252 (451)
395 cd03114 ArgK-like The function 97.9 0.00017 3.7E-09 52.6 10.0 21 21-41 1-21 (148)
396 PF09547 Spore_IV_A: Stage IV 97.9 0.00018 4E-09 60.2 11.1 129 17-150 15-193 (492)
397 KOG3905 Dynein light intermedi 97.9 0.00043 9.3E-09 56.0 12.4 28 17-44 50-77 (473)
398 cd01859 MJ1464 MJ1464. This f 97.9 0.00016 3.5E-09 53.0 9.5 89 101-211 10-98 (156)
399 cd03222 ABC_RNaseL_inhibitor T 97.9 0.00045 9.8E-09 51.9 11.6 28 17-44 23-50 (177)
400 PF02263 GBP: Guanylate-bindin 97.8 0.00013 2.9E-09 58.2 9.2 67 16-82 18-87 (260)
401 cd01855 YqeH YqeH. YqeH is an 97.8 4.8E-05 1E-09 57.8 6.1 100 93-209 24-125 (190)
402 COG1618 Predicted nucleotide k 97.8 0.001 2.3E-08 48.5 12.2 118 18-148 4-141 (179)
403 TIGR03596 GTPase_YlqF ribosome 97.8 0.00023 5E-09 57.4 9.9 94 94-211 12-105 (276)
404 COG0488 Uup ATPase components 97.8 0.00011 2.4E-09 64.2 8.5 29 17-45 27-55 (530)
405 TIGR02868 CydC thiol reductant 97.8 7.4E-05 1.6E-09 65.8 7.5 28 17-44 359-386 (529)
406 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.8 0.00033 7.1E-09 50.8 9.6 27 18-44 25-51 (144)
407 cd03223 ABCD_peroxisomal_ALDP 97.8 0.00023 4.9E-09 52.9 8.6 28 17-44 25-52 (166)
408 KOG0066 eIF2-interacting prote 97.7 0.00038 8.2E-09 58.7 10.1 25 20-44 614-638 (807)
409 COG0378 HypB Ni2+-binding GTPa 97.7 0.00018 4E-09 54.0 7.1 23 19-41 13-35 (202)
410 cd03230 ABC_DR_subfamily_A Thi 97.7 0.00072 1.6E-08 50.6 10.3 28 17-44 24-51 (173)
411 COG0552 FtsY Signal recognitio 97.7 0.00051 1.1E-08 55.9 9.9 147 16-185 136-319 (340)
412 cd03238 ABC_UvrA The excision 97.7 0.00024 5.3E-09 53.3 7.5 25 17-41 19-43 (176)
413 cd01856 YlqF YlqF. Proteins o 97.7 0.0004 8.7E-09 51.8 8.7 92 94-209 10-101 (171)
414 COG3640 CooC CO dehydrogenase 97.6 0.00019 4E-09 55.5 6.7 46 101-150 153-198 (255)
415 COG4988 CydD ABC-type transpor 97.6 0.00033 7.2E-09 60.7 9.0 28 17-44 345-372 (559)
416 KOG1534 Putative transcription 97.6 0.00043 9.3E-09 52.7 8.4 78 70-152 99-179 (273)
417 COG0523 Putative GTPases (G3E 97.6 0.00083 1.8E-08 55.2 10.7 125 20-153 2-161 (323)
418 cd03216 ABC_Carb_Monos_I This 97.6 0.00052 1.1E-08 50.8 8.7 28 17-44 24-51 (163)
419 KOG1533 Predicted GTPase [Gene 97.6 0.0003 6.4E-09 54.4 7.1 19 22-40 5-23 (290)
420 PF00004 AAA: ATPase family as 97.6 0.00038 8.2E-09 49.1 7.4 21 22-42 1-21 (132)
421 PRK13695 putative NTPase; Prov 97.6 0.00062 1.3E-08 51.0 8.7 22 20-41 1-22 (174)
422 PRK09563 rbgA GTPase YlqF; Rev 97.6 0.00072 1.6E-08 54.9 9.7 93 95-211 16-108 (287)
423 KOG0469 Elongation factor 2 [T 97.6 0.0004 8.6E-09 59.3 8.2 142 16-178 16-187 (842)
424 cd01857 HSR1_MMR1 HSR1/MMR1. 97.6 0.00031 6.8E-09 50.7 6.7 49 100-151 8-56 (141)
425 PRK11174 cysteine/glutathione 97.6 0.00026 5.6E-09 63.2 7.6 27 17-43 374-400 (588)
426 COG1126 GlnQ ABC-type polar am 97.6 8E-05 1.7E-09 56.9 3.6 31 17-47 26-56 (240)
427 PF13555 AAA_29: P-loop contai 97.6 8.4E-05 1.8E-09 45.4 3.0 20 21-40 25-44 (62)
428 PRK11537 putative GTP-binding 97.6 0.00066 1.4E-08 55.8 9.2 25 18-42 3-27 (318)
429 KOG0780 Signal recognition par 97.5 0.00085 1.8E-08 55.5 9.6 73 67-151 182-254 (483)
430 PF05783 DLIC: Dynein light in 97.5 0.008 1.7E-07 52.0 16.0 27 17-43 23-49 (472)
431 cd00071 GMPK Guanosine monopho 97.5 8.6E-05 1.9E-09 53.4 3.5 22 22-43 2-23 (137)
432 COG1136 SalX ABC-type antimicr 97.5 7.8E-05 1.7E-09 57.8 3.4 28 17-44 29-56 (226)
433 cd03228 ABCC_MRP_Like The MRP 97.5 0.00041 8.8E-09 51.8 7.3 27 18-44 27-53 (171)
434 cd03246 ABCC_Protease_Secretio 97.5 0.00062 1.3E-08 50.9 8.2 28 17-44 26-53 (173)
435 TIGR02857 CydD thiol reductant 97.5 0.00033 7.2E-09 61.7 7.5 28 17-44 346-373 (529)
436 COG0488 Uup ATPase components 97.5 0.00039 8.5E-09 60.9 7.7 44 17-60 346-389 (530)
437 KOG1707 Predicted Ras related/ 97.5 0.0024 5.2E-08 55.5 12.1 121 14-152 420-541 (625)
438 smart00010 small_GTPase Small 97.5 0.00062 1.3E-08 47.4 7.4 24 20-43 1-24 (124)
439 KOG0463 GTP-binding protein GP 97.5 0.00039 8.5E-09 57.3 7.0 138 19-177 133-306 (641)
440 COG3840 ThiQ ABC-type thiamine 97.5 9.4E-05 2E-09 55.1 3.2 27 18-44 24-50 (231)
441 TIGR03597 GTPase_YqeH ribosome 97.5 0.00065 1.4E-08 56.9 8.6 100 92-207 52-151 (360)
442 PF00005 ABC_tran: ABC transpo 97.5 9.6E-05 2.1E-09 52.9 3.1 26 19-44 11-36 (137)
443 TIGR02475 CobW cobalamin biosy 97.5 0.00064 1.4E-08 56.5 8.3 25 18-42 3-27 (341)
444 cd01849 YlqF_related_GTPase Yl 97.5 0.00017 3.6E-09 53.0 4.4 83 105-208 1-84 (155)
445 cd03243 ABC_MutS_homologs The 97.5 0.0014 3E-08 50.3 9.7 23 19-41 29-51 (202)
446 COG0194 Gmk Guanylate kinase [ 97.4 5.6E-05 1.2E-09 56.4 1.2 25 19-43 4-28 (191)
447 cd03215 ABC_Carb_Monos_II This 97.4 0.0014 3.1E-08 49.4 8.7 27 18-44 25-51 (182)
448 PRK10790 putative multidrug tr 97.4 0.00054 1.2E-08 61.2 7.2 28 17-44 365-392 (592)
449 COG2274 SunT ABC-type bacterio 97.3 0.002 4.3E-08 58.5 10.3 28 17-44 497-524 (709)
450 PF06858 NOG1: Nucleolar GTP-b 97.3 0.0018 3.9E-08 38.7 6.7 43 103-148 13-58 (58)
451 PRK11160 cysteine/glutathione 97.3 0.00091 2E-08 59.6 8.0 28 17-44 364-391 (574)
452 cd02038 FleN-like FleN is a me 97.3 0.0021 4.6E-08 46.2 8.6 104 24-149 5-109 (139)
453 KOG0781 Signal recognition par 97.3 0.00073 1.6E-08 57.3 6.7 101 67-186 465-567 (587)
454 PF03215 Rad17: Rad17 cell cyc 97.3 0.0076 1.6E-07 52.8 13.2 82 105-188 133-215 (519)
455 PF13207 AAA_17: AAA domain; P 97.3 0.00021 4.5E-09 50.0 2.9 21 21-41 1-21 (121)
456 TIGR03375 type_I_sec_LssB type 97.3 0.00083 1.8E-08 61.2 7.3 28 17-44 489-516 (694)
457 COG1132 MdlB ABC-type multidru 97.3 0.00098 2.1E-08 59.3 7.6 29 17-45 353-381 (567)
458 cd03213 ABCG_EPDR ABCG transpo 97.3 0.0064 1.4E-07 46.3 11.0 27 17-43 33-59 (194)
459 cd03225 ABC_cobalt_CbiO_domain 97.2 0.00031 6.8E-09 54.2 3.7 27 18-44 26-52 (211)
460 cd03264 ABC_drug_resistance_li 97.2 0.00027 5.9E-09 54.6 3.2 24 21-44 27-50 (211)
461 cd03261 ABC_Org_Solvent_Resist 97.2 0.00026 5.7E-09 55.6 3.2 28 17-44 24-51 (235)
462 cd00267 ABC_ATPase ABC (ATP-bi 97.2 0.0027 5.9E-08 46.5 8.4 26 18-43 24-49 (157)
463 TIGR01166 cbiO cobalt transpor 97.2 0.00028 6E-09 53.6 3.1 27 18-44 17-43 (190)
464 cd01130 VirB11-like_ATPase Typ 97.2 0.00027 6E-09 53.5 3.1 26 18-43 24-49 (186)
465 PRK14738 gmk guanylate kinase; 97.2 0.00049 1.1E-08 53.0 4.5 32 10-42 5-36 (206)
466 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.2 0.00029 6.3E-09 54.7 3.1 28 17-44 28-55 (218)
467 COG4525 TauB ABC-type taurine 97.2 0.00027 5.9E-09 53.3 2.7 27 17-43 29-55 (259)
468 cd03265 ABC_DrrA DrrA is the A 97.2 0.0003 6.5E-09 54.7 3.2 26 18-43 25-50 (220)
469 TIGR00235 udk uridine kinase. 97.2 0.00032 6.9E-09 54.1 3.2 26 17-42 4-29 (207)
470 COG4962 CpaF Flp pilus assembl 97.2 0.00052 1.1E-08 56.1 4.4 26 19-44 173-198 (355)
471 TIGR02673 FtsE cell division A 97.2 0.0004 8.6E-09 53.7 3.7 28 17-44 26-53 (214)
472 cd03226 ABC_cobalt_CbiO_domain 97.2 0.00039 8.5E-09 53.4 3.6 27 18-44 25-51 (205)
473 PRK15177 Vi polysaccharide exp 97.2 0.00042 9.1E-09 53.7 3.8 26 19-44 13-38 (213)
474 PF05673 DUF815: Protein of un 97.2 0.0026 5.7E-08 49.9 8.0 28 16-43 49-76 (249)
475 cd03280 ABC_MutS2 MutS2 homolo 97.2 0.01 2.2E-07 45.4 11.4 21 20-40 29-49 (200)
476 cd03293 ABC_NrtD_SsuB_transpor 97.2 0.00034 7.3E-09 54.4 3.2 27 18-44 29-55 (220)
477 KOG1970 Checkpoint RAD17-RFC c 97.2 0.019 4.1E-07 49.9 13.7 91 105-210 195-285 (634)
478 cd00820 PEPCK_HprK Phosphoenol 97.2 0.00044 9.6E-09 47.3 3.3 23 18-40 14-36 (107)
479 COG1120 FepC ABC-type cobalami 97.2 0.00039 8.5E-09 55.0 3.4 27 18-44 27-53 (258)
480 TIGR03608 L_ocin_972_ABC putat 97.2 0.00036 7.8E-09 53.6 3.1 27 18-44 23-49 (206)
481 TIGR00960 3a0501s02 Type II (G 97.2 0.0004 8.7E-09 53.8 3.4 28 17-44 27-54 (216)
482 cd03259 ABC_Carb_Solutes_like 97.2 0.00036 7.8E-09 54.0 3.1 27 18-44 25-51 (213)
483 cd01983 Fer4_NifH The Fer4_Nif 97.1 0.0034 7.3E-08 41.5 7.6 68 22-114 2-69 (99)
484 cd03269 ABC_putative_ATPase Th 97.1 0.00037 8E-09 53.8 3.2 27 18-44 25-51 (210)
485 cd03292 ABC_FtsE_transporter F 97.1 0.00037 8E-09 53.9 3.1 27 18-44 26-52 (214)
486 cd00009 AAA The AAA+ (ATPases 97.1 0.0036 7.7E-08 44.5 8.2 25 19-43 19-43 (151)
487 PRK07261 topology modulation p 97.1 0.00037 7.9E-09 52.1 2.9 23 20-42 1-23 (171)
488 PRK10078 ribose 1,5-bisphospho 97.1 0.0004 8.7E-09 52.6 3.1 23 21-43 4-26 (186)
489 PRK14737 gmk guanylate kinase; 97.1 0.00055 1.2E-08 51.9 3.8 26 18-43 3-28 (186)
490 TIGR02315 ABC_phnC phosphonate 97.1 0.00039 8.3E-09 54.9 3.1 28 17-44 26-53 (243)
491 cd03224 ABC_TM1139_LivF_branch 97.1 0.00049 1.1E-08 53.5 3.7 28 17-44 24-51 (222)
492 cd03258 ABC_MetN_methionine_tr 97.1 0.00051 1.1E-08 53.9 3.7 28 17-44 29-56 (233)
493 cd03235 ABC_Metallic_Cations A 97.1 0.00051 1.1E-08 53.1 3.6 28 17-44 23-50 (213)
494 cd03218 ABC_YhbG The ABC trans 97.1 0.00051 1.1E-08 53.8 3.7 27 18-44 25-51 (232)
495 PRK05480 uridine/cytidine kina 97.1 0.00043 9.3E-09 53.4 3.2 26 17-42 4-29 (209)
496 COG3638 ABC-type phosphate/pho 97.1 0.00039 8.4E-09 53.9 2.9 25 19-43 30-54 (258)
497 cd03257 ABC_NikE_OppD_transpor 97.1 0.00053 1.2E-08 53.5 3.7 28 17-44 29-56 (228)
498 PRK13851 type IV secretion sys 97.1 0.00042 9.1E-09 57.5 3.2 26 18-43 161-186 (344)
499 COG1117 PstB ABC-type phosphat 97.1 0.00044 9.6E-09 52.9 3.0 27 17-43 31-57 (253)
500 KOG0054 Multidrug resistance-a 97.1 0.0025 5.4E-08 61.2 8.6 28 18-45 546-573 (1381)
No 1
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=100.00 E-value=5e-39 Score=248.78 Aligned_cols=202 Identities=44% Similarity=0.765 Sum_probs=172.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (225)
++|+|+|.+|+||||++|+|+|...+.......+.|..|..+...+ .+..+.||||||+.+....++++.+++.+++..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~ 79 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL 79 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence 5899999999999999999999999888777778899999998888 999999999999998887778888999999988
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158 100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 179 (225)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (225)
..+++|+||||++.+ +++..++..++.+.+.||.+..++++||+|++|...+. .++++++...+..++++++.|+.|
T Consensus 80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~--~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDD--SLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTT--THHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccc--cHHHHHhccCchhHhHHhhhcCCE
Confidence 999999999999998 99999999999999999999999999999999988886 688898864567799999999999
Q ss_pred EEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCCCHHHHhhcC
Q 036158 180 CVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 225 (225)
Q Consensus 180 ~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 225 (225)
|+.|++......+...|+.+|+++|.+|++++++.+|++++|++++
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~~ 202 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEEAE 202 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHHH
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHH
Confidence 9999998554556679999999999999999999999999999864
No 2
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=100.00 E-value=3e-37 Score=236.53 Aligned_cols=196 Identities=51% Similarity=0.845 Sum_probs=176.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (225)
++|+|+|.+|+|||||+|+|+|...+.+.....+.|..++.....+ .+..+.|+||||+.+.......+...+.+++..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 4799999999999999999999998777666678899999988888 889999999999998876666777788888888
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158 100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 179 (225)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (225)
+.+++|++|+|++++ +++..+...++.+++.|+....+++++|+|++|.+... .+++++.. ....++.+++.|+.+
T Consensus 80 ~~~g~~~illVi~~~-~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~--~~~~~~~~-~~~~l~~l~~~c~~r 155 (196)
T cd01852 80 SAPGPHAFLLVVPLG-RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGG--TLEDYLEN-SCEALKRLLEKCGGR 155 (196)
T ss_pred cCCCCEEEEEEEECC-CcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCC--cHHHHHHh-ccHHHHHHHHHhCCe
Confidence 889999999999998 49999999999999999988889999999999998775 88888888 457899999999999
Q ss_pred EEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCCCHHHH
Q 036158 180 CVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIF 221 (225)
Q Consensus 180 ~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~~~~~~ 221 (225)
|+.|++..+ ++..+.|+.+|+++|.+|++++++.+|+++||
T Consensus 156 ~~~f~~~~~-~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~~~ 196 (196)
T cd01852 156 YVAFNNKAK-GEEQEQQVKELLAKVESMVKENGGKPYTNDMY 196 (196)
T ss_pred EEEEeCCCC-cchhHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 999999987 77889999999999999999999999999875
No 3
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.92 E-value=3.2e-23 Score=165.61 Aligned_cols=197 Identities=22% Similarity=0.287 Sum_probs=141.2
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHH
Q 036158 13 TSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKE 92 (225)
Q Consensus 13 ~~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~ 92 (225)
.+...+.++|+++|.+|+||||++|+|+|...+..+. ..+.+..+....... .+..+.||||||+.+....+++....
T Consensus 32 ~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~-f~s~t~~~~~~~~~~-~G~~l~VIDTPGL~d~~~~~e~~~~~ 109 (313)
T TIGR00991 32 KEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSA-FQSEGLRPMMVSRTR-AGFTLNIIDTPGLIEGGYINDQAVNI 109 (313)
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCcceeEEEEEEEE-CCeEEEEEECCCCCchHHHHHHHHHH
Confidence 3445678999999999999999999999998654432 233344433344455 78899999999999764434444333
Q ss_pred HHHHHhhcCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158 93 IVKCIGMTKDGIHAVLVVFSVR-NRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 171 (225)
Q Consensus 93 ~~~~~~~~~~~~~~ii~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (225)
+..++. ..++|++|||.+.+ .+++..+...++.+++.||.+...++++|+||+|..++...+.++|+.+ +...+++
T Consensus 110 ik~~l~--~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~-~~~~lq~ 186 (313)
T TIGR00991 110 IKRFLL--GKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSK-RSEALLR 186 (313)
T ss_pred HHHHhh--cCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHh-cHHHHHH
Confidence 333322 24799999997764 3688888999999999999999999999999999887666789999988 8888999
Q ss_pred HHHHcC-----------CcEEEeeCCCcccc--------ccHH-HHHHHHHHHHHHHHHcCCC
Q 036158 172 ILQLCD-----------NRCVLFDNKTKDTA--------KRTE-QVGKLLSLVNSVIVQNGGQ 214 (225)
Q Consensus 172 ~~~~~~-----------~~~~~~~~~~~~~~--------~~~~-~v~~l~~~i~~~~~~~~~~ 214 (225)
+++.+. .++.++.|...+.. .++. =+..|++.|.++.....++
T Consensus 187 ~i~~~~~~~~~~~~~~~~pv~lven~~~c~~n~~ge~vlp~g~~w~~~l~~~~~~~~~~~~~~ 249 (313)
T TIGR00991 187 VIHSGAGLKKRDYQDFPIPVALVENSGRCKKNESDEKILPDGTPWIPKLMKEITEVISNGSKP 249 (313)
T ss_pred HHHHHhcccccccccccCCEEEEecCCcccCCCCCCeECCCCCccHHHHHHHHHHHHhCCCCC
Confidence 988653 23345555433221 0111 3568888888887664443
No 4
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.91 E-value=7.7e-24 Score=174.46 Aligned_cols=162 Identities=22% Similarity=0.270 Sum_probs=133.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (225)
+.|+++|++|+|||||+|+|++.....+ +..+++|++..+...+| .+..+.++||+|+.+.. .+.+.+.+......
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV-~D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~~~--~~~l~~~i~~Qa~~ 79 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIV-SDTPGVTRDRIYGDAEW-LGREFILIDTGGLDDGD--EDELQELIREQALI 79 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEe-ecCCCCccCCccceeEE-cCceEEEEECCCCCcCC--chHHHHHHHHHHHH
Confidence 7899999999999999999999998766 56899999999999999 88889999999998542 35677778888878
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158 100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 179 (225)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (225)
+...+|++|||+|+..++++.|..+.++|+.. ++|+++|+||+|..+.. ....+|+..
T Consensus 80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~-----~kpviLvvNK~D~~~~e-~~~~efysl---------------- 137 (444)
T COG1160 80 AIEEADVILFVVDGREGITPADEEIAKILRRS-----KKPVILVVNKIDNLKAE-ELAYEFYSL---------------- 137 (444)
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEEcccCchhh-hhHHHHHhc----------------
Confidence 88899999999999989999999999999842 38999999999976332 122222211
Q ss_pred EEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 180 CVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 180 ~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
.|....+.||.++.++.+|++.+.+.++
T Consensus 138 --G~g~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 138 --GFGEPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred --CCCCceEeehhhccCHHHHHHHHHhhcC
Confidence 2445567788999999999999988874
No 5
>COG1159 Era GTPase [General function prediction only]
Probab=99.91 E-value=1.8e-23 Score=163.77 Aligned_cols=179 Identities=16% Similarity=0.231 Sum_probs=134.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
.....|+++|+||+|||||+|+|+|.+...+++ .+.+|+..-..-+.. +...++++||||+... ...+.+.+.+.
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~-k~QTTR~~I~GI~t~-~~~QiIfvDTPGih~p---k~~l~~~m~~~ 78 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSP-KPQTTRNRIRGIVTT-DNAQIIFVDTPGIHKP---KHALGELMNKA 78 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecC-CcchhhhheeEEEEc-CCceEEEEeCCCCCCc---chHHHHHHHHH
Confidence 345679999999999999999999999877743 455555554444444 7889999999999855 55666777888
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
+..+...+|+++||+|+++.+...+...++.++.. ..|+++++||+|...+.. .+... .+....
T Consensus 79 a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~-----~~pvil~iNKID~~~~~~-~l~~~---------~~~~~~- 142 (298)
T COG1159 79 ARSALKDVDLILFVVDADEGWGPGDEFILEQLKKT-----KTPVILVVNKIDKVKPKT-VLLKL---------IAFLKK- 142 (298)
T ss_pred HHHHhccCcEEEEEEeccccCCccHHHHHHHHhhc-----CCCeEEEEEccccCCcHH-HHHHH---------HHHHHh-
Confidence 88889999999999999977999898888888872 269999999999887641 01121 111111
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCCCHHH
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEI 220 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~~~~~ 220 (225)
...|....+.||.++.+++.|++.+.+.+++..- +|.+++
T Consensus 143 ---~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~-~yp~d~ 182 (298)
T COG1159 143 ---LLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPW-YYPEDQ 182 (298)
T ss_pred ---hCCcceEEEeeccccCCHHHHHHHHHHhCCCCCC-cCChhh
Confidence 1124466677888999999999999999887643 444444
No 6
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.90 E-value=2.3e-22 Score=172.66 Aligned_cols=163 Identities=24% Similarity=0.327 Sum_probs=124.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCc---HHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS---EFVSKEI 93 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~---~~~~~~~ 93 (225)
.-.++|+|+|.||+||||++|+|+|...+.+....++ |+.+......+ .+..+.||||||+.+..... .++...+
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~-TTr~~ei~~~i-dG~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMG-TTSVQEIEGLV-QGVKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCC-ceEEEEEEEEE-CCceEEEEECCCCCccccchHHHHHHHHHH
Confidence 3457899999999999999999999987766543444 44454444455 78899999999999875332 2333333
Q ss_pred HHHHhhcCCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC-----cccHHHHhhhcCCc
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRN-RFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN-----DETLEDYLGRECPK 167 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~-----~~~~~~~~~~~~~~ 167 (225)
..++. ..++|++|||.+.+. +.+.++...++.|++.||.+.+++++||+|++|..+++ +.+.++|+.+ +..
T Consensus 194 k~~Ls--k~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~-rs~ 270 (763)
T TIGR00993 194 KKFIK--KNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQ-RSH 270 (763)
T ss_pred HHHHh--cCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhh-ChH
Confidence 33333 236899999998762 33346778999999999999999999999999999743 2579999988 888
Q ss_pred hHHHHHHHcCCcEEEee
Q 036158 168 PLKEILQLCDNRCVLFD 184 (225)
Q Consensus 168 ~~~~~~~~~~~~~~~~~ 184 (225)
.++++|+.|..+++.++
T Consensus 271 ~Lq~~Irq~~g~~~l~n 287 (763)
T TIGR00993 271 IVQQAIGQAVGDLRLMN 287 (763)
T ss_pred HHHHHHHHhcCcceecc
Confidence 89999999998766655
No 7
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.90 E-value=3.4e-22 Score=148.83 Aligned_cols=172 Identities=19% Similarity=0.280 Sum_probs=121.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcH---HHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE---FVSKE 92 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~---~~~~~ 92 (225)
....+.|+++|++|+|||||||+|++.......+..+|.|+....+.+. ..+.++|.||++-...+.+ .....
T Consensus 21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~----~~~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD----DELRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec----CcEEEEeCCCcccccCCHHHHHHHHHH
Confidence 3466899999999999999999999977544556688888888776653 2388999999997765542 23334
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158 93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 172 (225)
Q Consensus 93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~ 172 (225)
+..++.... ...++++++|+.+.....|.++++++.+. ..|++||+||+|+++.. .....+.. +++.
T Consensus 97 i~~YL~~R~-~L~~vvlliD~r~~~~~~D~em~~~l~~~-----~i~~~vv~tK~DKi~~~--~~~k~l~~-----v~~~ 163 (200)
T COG0218 97 IEEYLEKRA-NLKGVVLLIDARHPPKDLDREMIEFLLEL-----GIPVIVVLTKADKLKKS--ERNKQLNK-----VAEE 163 (200)
T ss_pred HHHHHhhch-hheEEEEEEECCCCCcHHHHHHHHHHHHc-----CCCeEEEEEccccCChh--HHHHHHHH-----HHHH
Confidence 444444433 37899999999988999999999999885 38999999999999875 33322222 2222
Q ss_pred H-HHcCCc--EEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 173 L-QLCDNR--CVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 173 ~-~~~~~~--~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
+ ...... +..| |+..+.++++|...|.+.+.+
T Consensus 164 l~~~~~~~~~~~~~------ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 164 LKKPPPDDQWVVLF------SSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred hcCCCCccceEEEE------ecccccCHHHHHHHHHHHhhc
Confidence 2 111222 2222 233457899999999887654
No 8
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.89 E-value=7.8e-22 Score=155.47 Aligned_cols=135 Identities=26% Similarity=0.309 Sum_probs=105.4
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCC---CcHHHHH
Q 036158 15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA---DSEFVSK 91 (225)
Q Consensus 15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~---~~~~~~~ 91 (225)
.....++|+|+|.+|+|||||+|+|++...+.+. ...+.|..+..+...+ ++..+.||||||+.+... .++++..
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~-~~~~~T~~~~~~~~~~-~g~~i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATS-AFQSETLRVREVSGTV-DGFKLNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCceEEEEEEEEEE-CCeEEEEEECCCcCcchhhHHHHHHHHH
Confidence 3466799999999999999999999998876553 3455677777777776 788999999999997742 1233334
Q ss_pred HHHHHHhhcCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158 92 EIVKCIGMTKDGIHAVLVVFSVR-NRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN 153 (225)
Q Consensus 92 ~~~~~~~~~~~~~~~ii~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~ 153 (225)
.+.+++.. ..+|+++||..++ .+.+..+..+++.+.+.|+.+...++++|+||+|..++.
T Consensus 105 ~I~~~l~~--~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 105 SIKRYLKK--KTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHHHhc--cCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 44444332 3679999998775 367788889999999999998889999999999988665
No 9
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.88 E-value=4.6e-22 Score=145.02 Aligned_cols=156 Identities=20% Similarity=0.214 Sum_probs=104.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (225)
++|+++|.+|+|||||+|+|+|.+.. . ...+++|.+.....+.+ .+..+.++||||.++......+ .+-..+++.
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~-v-~n~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~s~e-e~v~~~~l~- 75 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQK-V-GNWPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSKSEE-ERVARDYLL- 75 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEE-E-EESTTSSSEEEEEEEEE-TTEEEEEEE----SSSSSSSHH-HHHHHHHHH-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCce-e-cCCCCCCeeeeeEEEEe-cCceEEEEECCCcccCCCCCcH-HHHHHHHHh-
Confidence 47999999999999999999999953 3 44788999998888888 7899999999999876543321 111222322
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158 100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 179 (225)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (225)
...+|++++|+|+. .+. .+..++..+.+. ..|+++++||+|..+..... .....+-+..+.+
T Consensus 76 -~~~~D~ii~VvDa~-~l~-r~l~l~~ql~e~-----g~P~vvvlN~~D~a~~~g~~----------id~~~Ls~~Lg~p 137 (156)
T PF02421_consen 76 -SEKPDLIIVVVDAT-NLE-RNLYLTLQLLEL-----GIPVVVVLNKMDEAERKGIE----------IDAEKLSERLGVP 137 (156)
T ss_dssp -HTSSSEEEEEEEGG-GHH-HHHHHHHHHHHT-----TSSEEEEEETHHHHHHTTEE----------E-HHHHHHHHTS-
T ss_pred -hcCCCEEEEECCCC-CHH-HHHHHHHHHHHc-----CCCEEEEEeCHHHHHHcCCE----------ECHHHHHHHhCCC
Confidence 45789999999997 432 233444555543 38999999999976543111 1134444455666
Q ss_pred EEEeeCCCccccccHHHHHHHHHHH
Q 036158 180 CVLFDNKTKDTAKRTEQVGKLLSLV 204 (225)
Q Consensus 180 ~~~~~~~~~~~~~~~~~v~~l~~~i 204 (225)
+..+. +.++.++++|++.|
T Consensus 138 vi~~s------a~~~~g~~~L~~~I 156 (156)
T PF02421_consen 138 VIPVS------ARTGEGIDELKDAI 156 (156)
T ss_dssp EEEEB------TTTTBTHHHHHHHH
T ss_pred EEEEE------eCCCcCHHHHHhhC
Confidence 55554 44568999999875
No 10
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.87 E-value=3.8e-21 Score=154.30 Aligned_cols=166 Identities=15% Similarity=0.201 Sum_probs=109.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT 100 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (225)
+|+++|.+|+|||||+|+|++.....++ ..+++|+.... .+...++..+.++||||+.+.. ....+.+.+.+..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs-~~~~TTr~~i~-~i~~~~~~qii~vDTPG~~~~~---~~l~~~~~~~~~~~ 76 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITS-PKAQTTRNRIS-GIHTTGASQIIFIDTPGFHEKK---HSLNRLMMKEARSA 76 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecC-CCCCcccCcEE-EEEEcCCcEEEEEECcCCCCCc---chHHHHHHHHHHHH
Confidence 6899999999999999999998865443 34455655433 3333366789999999998642 22333344444456
Q ss_pred CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcE
Q 036158 101 KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 180 (225)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (225)
...+|++++|+|++...+. +..++..+.. ...|+++|+||+|..... ...+. +..+....+
T Consensus 77 l~~aDvvl~VvD~~~~~~~-~~~i~~~l~~-----~~~p~ilV~NK~Dl~~~~--~~~~~--------~~~~~~~~~--- 137 (270)
T TIGR00436 77 IGGVDLILFVVDSDQWNGD-GEFVLTKLQN-----LKRPVVLTRNKLDNKFKD--KLLPL--------IDKYAILED--- 137 (270)
T ss_pred HhhCCEEEEEEECCCCCch-HHHHHHHHHh-----cCCCEEEEEECeeCCCHH--HHHHH--------HHHHHhhcC---
Confidence 6788999999999854443 2344444443 237999999999986332 22221 222222222
Q ss_pred EEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 181 VLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 181 ~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
+....+.||.++.++++|++.+.+.+++..
T Consensus 138 --~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~ 167 (270)
T TIGR00436 138 --FKDIVPISALTGDNTSFLAAFIEVHLPEGP 167 (270)
T ss_pred --CCceEEEecCCCCCHHHHHHHHHHhCCCCC
Confidence 123345677788999999999999886653
No 11
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.87 E-value=2.1e-21 Score=160.15 Aligned_cols=187 Identities=21% Similarity=0.258 Sum_probs=139.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
..++|+++|.+|+|||||+|+|+|+....++ ..+++|++.-...+++ +++.+.++||.|+-....-.+.+..--....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~-~~aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVS-DIAGTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEec-CCCCccccceeeeEEE-CCeEEEEEECCCCCcccccccceEEEeehhh
Confidence 5699999999999999999999999977664 4778899998888898 8999999999998643322221110000111
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
..+...+|++++|+|+..+++..+.++...+.+. .+++++|+||||.++......+++..+ ++..+...+
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~-----g~~~vIvvNKWDl~~~~~~~~~~~k~~-----i~~~l~~l~ 324 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLRIAGLIEEA-----GRGIVIVVNKWDLVEEDEATMEEFKKK-----LRRKLPFLD 324 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHc-----CCCeEEEEEccccCCchhhHHHHHHHH-----HHHHhcccc
Confidence 1344567999999999989999998888888774 489999999999988644466666555 555554444
Q ss_pred CcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCCCHHHH
Q 036158 178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIF 221 (225)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~~~~~~ 221 (225)
|......||.++.++.+|++.+.+......+..-+..|+
T Consensus 325 -----~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN 363 (444)
T COG1160 325 -----FAPIVFISALTGQGLDKLFEAIKEIYECATRRISTSLLN 363 (444)
T ss_pred -----CCeEEEEEecCCCChHHHHHHHHHHHHHhccccCHHHHH
Confidence 334445567788999999999999888887776555443
No 12
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=1.1e-20 Score=157.85 Aligned_cols=171 Identities=19% Similarity=0.159 Sum_probs=113.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT 100 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (225)
.|+|+|.+|+|||||+|+|++..+ .....+.+|+......+.+++...++|+||||+.........+...+.+.
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~---- 234 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKH---- 234 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc--cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHH----
Confidence 799999999999999999998875 33456788888888888874456799999999987554444445445443
Q ss_pred CCCccEEEEEEeCCC---C-CCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 101 KDGIHAVLVVFSVRN---R-FSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 101 ~~~~~~ii~v~~~~~---~-~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
...++++++|+|+.. . .......+++.+......-..+|.++|+||+|+.... .+.+. ++++.+..
T Consensus 235 i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~--el~~~--------l~~l~~~~ 304 (390)
T PRK12298 235 LERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEE--EAEER--------AKAIVEAL 304 (390)
T ss_pred HHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChH--HHHHH--------HHHHHHHh
Confidence 345699999999761 1 1122234445554432111247999999999976432 22222 23333332
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
+... ...+.|+.++.++++|++.|.+++.+.
T Consensus 305 ~~~~----~Vi~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 305 GWEG----PVYLISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CCCC----CEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence 2110 123445667799999999999998775
No 13
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=1.5e-19 Score=148.31 Aligned_cols=172 Identities=17% Similarity=0.157 Sum_probs=114.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (225)
..|+|+|.+|||||||+|+|++..+ .....+.+|..+....+.+.++..++++||||+.+.......+...+.+.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~--~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhi-- 234 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKP--KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHI-- 234 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCC--ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHh--
Confidence 4689999999999999999998764 234466788888888887755678999999999876554444555555544
Q ss_pred cCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158 100 TKDGIHAVLVVFSVRNRFSEEEG-AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 178 (225)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (225)
.+++++++|+|+++..+.++. .+.+.+......-..+|+++|+||+|+.... ..... . ++......+.
T Consensus 235 --e~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~--~~~~~--~-----~~~~~~~~~~ 303 (335)
T PRK12299 235 --ERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEE--EEREK--R-----AALELAALGG 303 (335)
T ss_pred --hhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCch--hHHHH--H-----HHHHHHhcCC
Confidence 456999999999743333332 3444444432111347999999999976442 11110 1 1222222232
Q ss_pred cEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 179 RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
.+ .+.||.++.++++|++.|.+.+.+..
T Consensus 304 ~i------~~iSAktg~GI~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 304 PV------FLISAVTGEGLDELLRALWELLEEAR 331 (335)
T ss_pred CE------EEEEcCCCCCHHHHHHHHHHHHHhhh
Confidence 22 34466677999999999998887653
No 14
>PRK15494 era GTPase Era; Provisional
Probab=99.85 E-value=1.8e-20 Score=154.51 Aligned_cols=177 Identities=20% Similarity=0.247 Sum_probs=117.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
....+|+++|.+|+|||||+|+|++.....+. ..+.+|+......+.+ ++..+.+|||||+.+... .+...+.+.
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs-~k~~tTr~~~~~~~~~-~~~qi~~~DTpG~~~~~~---~l~~~~~r~ 124 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVT-PKVQTTRSIITGIITL-KDTQVILYDTPGIFEPKG---SLEKAMVRC 124 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeecc-CCCCCccCcEEEEEEe-CCeEEEEEECCCcCCCcc---cHHHHHHHH
Confidence 34569999999999999999999998764432 3445566555555666 678899999999865422 233334444
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
...++..+|++++|+|....+...+..++..+.+. ..|+++|+||+|+... ...+ +.+.+...
T Consensus 125 ~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~-----~~p~IlViNKiDl~~~---~~~~---------~~~~l~~~ 187 (339)
T PRK15494 125 AWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSL-----NIVPIFLLNKIDIESK---YLND---------IKAFLTEN 187 (339)
T ss_pred HHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc-----CCCEEEEEEhhcCccc---cHHH---------HHHHHHhc
Confidence 44456688999999998766776666666666542 2577889999997432 2221 22233222
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCCCHHH
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEI 220 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~~~~~ 220 (225)
.. +....+.||.++.++++|++.|.+.+++. ...|.+++
T Consensus 188 ~~----~~~i~~iSAktg~gv~eL~~~L~~~l~~~-~~~~~~~~ 226 (339)
T PRK15494 188 HP----DSLLFPISALSGKNIDGLLEYITSKAKIS-PWLYAEDD 226 (339)
T ss_pred CC----CcEEEEEeccCccCHHHHHHHHHHhCCCC-CCCCCCCC
Confidence 21 11233557778899999999998887763 34455544
No 15
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=1e-19 Score=152.81 Aligned_cols=167 Identities=17% Similarity=0.175 Sum_probs=112.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT 100 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (225)
.|+|+|.+|+|||||||+|++..+. ....+.+|..+....+.++++..++|+||||+.+.......+...+.+.+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~k--Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhi--- 234 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPK--IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHI--- 234 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCc--cccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHH---
Confidence 8999999999999999999987752 23466788888888887744789999999999865444444555554444
Q ss_pred CCCccEEEEEEeCCCC---CC-HHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 101 KDGIHAVLVVFSVRNR---FS-EEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 101 ~~~~~~ii~v~~~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
.+++++++|+|+.+. -. .....+.+.|..+...-..+|++||+||+|+. .. .+. +.++.+..
T Consensus 235 -er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~-~~----~e~--------l~~l~~~l 300 (424)
T PRK12297 235 -ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP-EA----EEN--------LEEFKEKL 300 (424)
T ss_pred -hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc-CC----HHH--------HHHHHHHh
Confidence 355999999999632 11 12233445555542222358999999999963 21 111 22233333
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
+..+ .+.|+.++.++++|++.|.+++.+..
T Consensus 301 ~~~i------~~iSA~tgeGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 301 GPKV------FPISALTGQGLDELLYAVAELLEETP 330 (424)
T ss_pred CCcE------EEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 3222 23456677899999999999887764
No 16
>PRK00089 era GTPase Era; Reviewed
Probab=99.85 E-value=2.7e-20 Score=151.10 Aligned_cols=177 Identities=20% Similarity=0.302 Sum_probs=115.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
....|+|+|.+|+|||||+|+|+|........ .+.+|+......... ++..+.++||||+.+.. ....+.+....
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~-~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~---~~l~~~~~~~~ 78 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSP-KPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPK---RALNRAMNKAA 78 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCC-CCCcccccEEEEEEc-CCceEEEEECCCCCCch---hHHHHHHHHHH
Confidence 34679999999999999999999988654432 333444332222232 55789999999997653 22334444444
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
......+|++++|+|+...++..+..+++.+... ..|+++|+||+|..... ....... ..+.+..+
T Consensus 79 ~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~-----~~pvilVlNKiDl~~~~-~~l~~~~--------~~l~~~~~ 144 (292)
T PRK00089 79 WSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKV-----KTPVILVLNKIDLVKDK-EELLPLL--------EELSELMD 144 (292)
T ss_pred HHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhc-----CCCEEEEEECCcCCCCH-HHHHHHH--------HHHHhhCC
Confidence 5566788999999999866776666666666531 37999999999986432 1222222 22222222
Q ss_pred CcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCCCHH
Q 036158 178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDE 219 (225)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~~~~ 219 (225)
+....+.|+..+.++++|++.+.+.+++.. ..|.++
T Consensus 145 -----~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~-~~y~~~ 180 (292)
T PRK00089 145 -----FAEIVPISALKGDNVDELLDVIAKYLPEGP-PYYPED 180 (292)
T ss_pred -----CCeEEEecCCCCCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence 222334566677999999999999887654 344433
No 17
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.84 E-value=2.6e-19 Score=152.75 Aligned_cols=184 Identities=22% Similarity=0.266 Sum_probs=123.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
...++|+++|.+|+|||||+|+|++...... ...+++|.......+.+ ++..+.+|||||+.......+.+.......
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~-~~~~gtt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIV-SDIAGTTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeec-CCCCCceECcEeEEEEE-CCcEEEEEECCCccccccchhhHHHHHHHH
Confidence 4468999999999999999999998875433 33556777766666666 777999999999976543222111111111
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
...+...+|++|+|+|+.++.+..+..++..+.+. ..|+++|+||||+.+. ....+++... +...+...
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~~~-~~~~~~~~~~-----~~~~~~~~ 316 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLRIAGLILEA-----GKALVIVVNKWDLVKD-EKTREEFKKE-----LRRKLPFL 316 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc-----CCcEEEEEECcccCCC-HHHHHHHHHH-----HHHhcccC
Confidence 12345678999999999888888877766655442 3799999999998732 1233333333 33332221
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCCCH
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTD 218 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~~~ 218 (225)
+ +......||.++.+++++++.+.+.........-+.
T Consensus 317 ~-----~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~~~i~t~ 353 (429)
T TIGR03594 317 D-----FAPIVFISALTGQGVDKLLDAIDEVYENANRRISTS 353 (429)
T ss_pred C-----CCceEEEeCCCCCCHHHHHHHHHHHHHHhcCcCCHH
Confidence 1 123345677788999999999998887765544433
No 18
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.84 E-value=6e-20 Score=128.99 Aligned_cols=116 Identities=22% Similarity=0.339 Sum_probs=84.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT 100 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (225)
+|+|+|.+|+|||||+|+|++....... ..++.|.......+.+ ++..+.++||||+.+........ ..+.......
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~-~~~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~~~~~-~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVS-NIPGTTRDPVYGQFEY-NNKKFILVDTPGINDGESQDNDG-KEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEES-SSTTSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHHHHHH-HHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhcccccccc-ccccceeeeeeeeeee-ceeeEEEEeCCCCcccchhhHHH-HHHHHHHHHH
Confidence 6899999999999999999987644443 3567777776666677 88889999999998654222211 2233344334
Q ss_pred CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 036158 101 KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTG 146 (225)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k 146 (225)
..+|++++|+++..+....+.++++.++ ..+|+++|+||
T Consensus 78 -~~~d~ii~vv~~~~~~~~~~~~~~~~l~------~~~~~i~v~NK 116 (116)
T PF01926_consen 78 -SKSDLIIYVVDASNPITEDDKNILRELK------NKKPIILVLNK 116 (116)
T ss_dssp -CTESEEEEEEETTSHSHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred -HHCCEEEEEEECCCCCCHHHHHHHHHHh------cCCCEEEEEcC
Confidence 6789999999987545555666777773 23899999997
No 19
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.84 E-value=4.5e-19 Score=145.34 Aligned_cols=167 Identities=19% Similarity=0.233 Sum_probs=109.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (225)
..|+|+|.+|+|||||+|+|++... .....+.+|..+....+.+.+...+.|+||||+.+.......+...+.+.+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~--~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhi-- 233 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKP--KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHI-- 233 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCc--cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHH--
Confidence 5789999999999999999998764 223455678888887787734489999999999866544444555555544
Q ss_pred cCCCccEEEEEEeCCCC---CCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 100 TKDGIHAVLVVFSVRNR---FSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 100 ~~~~~~~ii~v~~~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
.+++++++|+|+++. ...++ ..+.+.+..+...-..+|+++|+||+|+.... ..++. .+++.+.
T Consensus 234 --erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~--~~~~~--------~~~l~~~ 301 (329)
T TIGR02729 234 --ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEE--ELAEL--------LKELKKA 301 (329)
T ss_pred --HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChH--HHHHH--------HHHHHHH
Confidence 355999999998732 11112 22333444332111348999999999986442 22222 2223333
Q ss_pred cCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158 176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~ 208 (225)
.+..+ .+.|+.++.++++|++.|.+.+
T Consensus 302 ~~~~v------i~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 302 LGKPV------FPISALTGEGLDELLYALAELL 328 (329)
T ss_pred cCCcE------EEEEccCCcCHHHHHHHHHHHh
Confidence 33332 2345667789999999997764
No 20
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=2.6e-19 Score=152.97 Aligned_cols=179 Identities=21% Similarity=0.260 Sum_probs=120.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
...++|+++|.+|+|||||+|+|++...... ...+++|.......+.+ ++..+.++||||+.................
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~-~~~~gtt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIV-SDIAGTTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCceEEEEEEEEEE-CCeeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 4579999999999999999999998875444 33566777776666666 788899999999875443222121111111
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
...+...+|++|+|+|+..+.+..+..++..+.+. .+|+++++||||..... ..++...+ +...+...
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~-----~~~~ivv~NK~Dl~~~~--~~~~~~~~-----~~~~l~~~ 316 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLRIAGLALEA-----GRALVIVVNKWDLVDEK--TMEEFKKE-----LRRRLPFL 316 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCcEEEEEECccCCCHH--HHHHHHHH-----HHHhcccc
Confidence 12344577999999999888888887777666542 37999999999987331 23333222 33222221
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCC
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQ 214 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~ 214 (225)
. +......||.++.+++++++.+.+...+....
T Consensus 317 ~-----~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~~~ 349 (435)
T PRK00093 317 D-----YAPIVFISALTGQGVDKLLEAIDEAYENANRR 349 (435)
T ss_pred c-----CCCEEEEeCCCCCCHHHHHHHHHHHHHHHcCc
Confidence 1 22334567777899999999998887765443
No 21
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=7.1e-19 Score=149.70 Aligned_cols=188 Identities=15% Similarity=0.131 Sum_probs=123.5
Q ss_pred CCcccCCCCCCCCCCCC----------------------ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEE
Q 036158 2 GGRVIDADSKPTSPSNG----------------------ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCE 59 (225)
Q Consensus 2 ~~~~~~~~~~~~~~~~~----------------------~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~ 59 (225)
||++-..|..+.++.+. ...|+|+|.+|+|||||+|+|++..+. ....+.+|..+.
T Consensus 120 GG~GG~Gn~~f~~~~~~~p~~~~~G~~Ge~~~~~leLk~~adV~LVG~PNAGKSTLln~Ls~akpk--IadypfTTl~P~ 197 (500)
T PRK12296 120 GGRGGLGNAALASKARKAPGFALLGEPGEERDLVLELKSVADVGLVGFPSAGKSSLISALSAAKPK--IADYPFTTLVPN 197 (500)
T ss_pred cCCCcCCCcccCCccCCCCccccCCCCCceEEEEEEecccceEEEEEcCCCCHHHHHHHHhcCCcc--ccccCcccccce
Confidence 67777777777766543 346899999999999999999987653 245677888888
Q ss_pred EEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCC----CCHHHH-HHHHHHHHHhc-
Q 036158 60 MQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNR----FSEEEG-AAIHILESLFG- 133 (225)
Q Consensus 60 ~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~----~~~~~~-~~~~~l~~~~~- 133 (225)
...+.+ .+..++|+||||+.+.......+...+.+.+ ..+|++|+|+|+.+. -...+. .+.+.|..+..
T Consensus 198 lGvv~~-~~~~f~laDtPGliegas~g~gLg~~fLrhi----eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~ 272 (500)
T PRK12296 198 LGVVQA-GDTRFTVADVPGLIPGASEGKGLGLDFLRHI----ERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPA 272 (500)
T ss_pred EEEEEE-CCeEEEEEECCCCccccchhhHHHHHHHHHH----HhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhc
Confidence 888887 6789999999999865444444444444443 456999999998621 111122 22334443321
Q ss_pred --------ccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHH
Q 036158 134 --------KKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVN 205 (225)
Q Consensus 134 --------~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~ 205 (225)
.-..+|++||+||+|+.... ...+. +...++..+.+++ +.|+.++.++++|+..|.
T Consensus 273 l~~~~~~~~l~~kP~IVVlNKiDL~da~--el~e~--------l~~~l~~~g~~Vf------~ISA~tgeGLdEL~~~L~ 336 (500)
T PRK12296 273 LDGDLGLGDLAERPRLVVLNKIDVPDAR--ELAEF--------VRPELEARGWPVF------EVSAASREGLRELSFALA 336 (500)
T ss_pred ccccchhhhhcCCCEEEEEECccchhhH--HHHHH--------HHHHHHHcCCeEE------EEECCCCCCHHHHHHHHH
Confidence 11247999999999975332 22111 2333333343333 335556689999999999
Q ss_pred HHHHHcC
Q 036158 206 SVIVQNG 212 (225)
Q Consensus 206 ~~~~~~~ 212 (225)
+++.+..
T Consensus 337 ell~~~r 343 (500)
T PRK12296 337 ELVEEAR 343 (500)
T ss_pred HHHHhhh
Confidence 9887754
No 22
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.83 E-value=2.6e-19 Score=133.73 Aligned_cols=172 Identities=20% Similarity=0.281 Sum_probs=105.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
.++|+++|.+|+|||||+|+|++...... ...+++|.......+.. ++..+.+|||||+.+.................
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIV-SDIAGTTRDSIDVPFEY-DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceec-cCCCCCccCceeeEEEE-CCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 47899999999999999999998764322 22344555554445555 67789999999998653211111110001112
Q ss_pred hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158 99 MTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 178 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (225)
.....+|++++|+|+..+.+.....++..+.. . ..|+++++||+|+........+.+.+. +++.+...+
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~---~--~~~~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~- 148 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLRIAGLILE---E--GKALVIVVNKWDLVEKDSKTMKEFKKE-----IRRKLPFLD- 148 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHh---c--CCCEEEEEeccccCCccHHHHHHHHHH-----HHhhccccc-
Confidence 23457899999999986666555444444332 1 379999999999876531233333222 222221111
Q ss_pred cEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158 179 RCVLFDNKTKDTAKRTEQVGKLLSLVNSV 207 (225)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~v~~l~~~i~~~ 207 (225)
.......|+..+.+++++++.+.++
T Consensus 149 ----~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 149 ----YAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ----CCceEEEeccCCCCHHHHHHHHHHh
Confidence 1223345667778999999888654
No 23
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.83 E-value=2.6e-19 Score=133.53 Aligned_cols=163 Identities=23% Similarity=0.228 Sum_probs=100.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcH-HHHHHHHHHHh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE-FVSKEIVKCIG 98 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~-~~~~~~~~~~~ 98 (225)
++|+++|.+|+|||||+|+|++.... . ...+..|..+......+ .+..+.+|||||+.+...... .+.......
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~-~-~~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~-- 75 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE-V-APYPFTTKSLFVGHFDY-KYLRWQVIDTPGLLDRPLEERNTIEMQAITA-- 75 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc-c-CCCCCcccceeEEEEcc-CceEEEEEECCCcCCccccCCchHHHHHHHH--
Confidence 57999999999999999999987642 1 22344566666655655 667999999999865322111 111111111
Q ss_pred hcCCCccEEEEEEeCCCCCC---HHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 99 MTKDGIHAVLVVFSVRNRFS---EEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
....+|++++|+|+.++.+ .....++..++..+. ..|+++|+||+|..... .... ..+....
T Consensus 76 -~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~~--~~~~---------~~~~~~~ 140 (168)
T cd01897 76 -LAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLLTFE--DLSE---------IEEEEEL 140 (168)
T ss_pred -HHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccCchh--hHHH---------HHHhhhh
Confidence 1123589999999874432 222345555554432 37999999999986543 2221 1112211
Q ss_pred cCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158 176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~ 208 (225)
-+. .....|+.++.+++++++.+.+++
T Consensus 141 ~~~------~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 141 EGE------EVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred ccC------ceEEEEecccCCHHHHHHHHHHHh
Confidence 111 123567778899999999987764
No 24
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.83 E-value=1.3e-18 Score=133.06 Aligned_cols=172 Identities=15% Similarity=0.297 Sum_probs=107.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcH--HHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE--FVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~~ 94 (225)
...++|+++|.+|+|||||+|+|++..........++.|..+.... + +..+.||||||+........ +....+.
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~--~~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V--NDKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c--CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 4568899999999999999999998752222233445565554433 2 46899999999875432221 1111222
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
.........++++++|+|...+.+..+.++++++... ..|++++.||+|..... ..+..... +.+.+.
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~-----~~~~iiv~nK~Dl~~~~--~~~~~~~~-----i~~~l~ 165 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEY-----GIPVLIVLTKADKLKKG--ERKKQLKK-----VRKALK 165 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHc-----CCcEEEEEECcccCCHH--HHHHHHHH-----HHHHHH
Confidence 2111233456889999988766666665566665432 36889999999987543 33332222 333443
Q ss_pred HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
.....++ +.|+..+.+++++++.|.+++++
T Consensus 166 ~~~~~~~------~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 166 FGDDEVI------LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred hcCCceE------EEEcCCCCCHHHHHHHHHHHhcC
Confidence 3222222 44666778999999999888765
No 25
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.83 E-value=2.1e-19 Score=153.31 Aligned_cols=162 Identities=20% Similarity=0.271 Sum_probs=121.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT 100 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (225)
+|+++|.+|+|||||+|+|++.....+ ...++.|++.....+.+ ++..+.||||||+... ...+.+.+...+..+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~---~~~~~~~~~~~~~~~ 75 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIV-SDTPGVTRDRKYGDAEW-GGREFILIDTGGIEED---DDGLDKQIREQAEIA 75 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCccee-cCCCCcccCceEEEEEE-CCeEEEEEECCCCCCc---chhHHHHHHHHHHHH
Confidence 489999999999999999998874333 34677888888888888 8889999999998643 233455566666667
Q ss_pred CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcE
Q 036158 101 KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 180 (225)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (225)
...+|++++|+|+..+++..+..+.+++++. .+|+++|+||+|..... .. ..+ +...+.
T Consensus 76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~-----~~piilVvNK~D~~~~~-~~------------~~~-~~~lg~-- 134 (429)
T TIGR03594 76 IEEADVILFVVDGREGLTPEDEEIAKWLRKS-----GKPVILVANKIDGKKED-AV------------AAE-FYSLGF-- 134 (429)
T ss_pred HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh-----CCCEEEEEECccCCccc-cc------------HHH-HHhcCC--
Confidence 7788999999999878888888888888763 37999999999976542 11 111 112222
Q ss_pred EEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 181 VLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 181 ~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
......|+.++.++.+|++.+.+.+.+.
T Consensus 135 ---~~~~~vSa~~g~gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 135 ---GEPIPISAEHGRGIGDLLDAILELLPEE 162 (429)
T ss_pred ---CCeEEEeCCcCCChHHHHHHHHHhcCcc
Confidence 2234556777899999999998877553
No 26
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=6.7e-19 Score=151.48 Aligned_cols=183 Identities=16% Similarity=0.200 Sum_probs=120.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH-
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC- 96 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~- 96 (225)
..++|+++|.+|+|||||+|+|++...... ...+++|.+.....+.+ ++..+.||||||+......... .+.+...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~-s~~~gtT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~~~-~e~~~~~~ 286 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVV-DDVAGTTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQASG-HEYYASLR 286 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccc-cCCCCccCCcceEEEEE-CCEEEEEEECCCccccccccch-HHHHHHHH
Confidence 468999999999999999999998875333 33566777666666677 7888999999998643221110 1111111
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
...+...+|++++|+|+.++.+..+..++..+.. ...|+++|+||+|+.... ....+..+ +.+.+...
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~-----~~~piIiV~NK~Dl~~~~--~~~~~~~~-----i~~~l~~~ 354 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQRVLSMVIE-----AGRALVLAFNKWDLVDED--RRYYLERE-----IDRELAQV 354 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECcccCChh--HHHHHHHH-----HHHhcccC
Confidence 1224568899999999987888777666655543 237999999999986532 22222111 22222111
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCCCHHH
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEI 220 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~~~~~ 220 (225)
. + ......||.++.+++++++.+.+.........-+..+
T Consensus 355 ~--~---~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~i~t~~l 393 (472)
T PRK03003 355 P--W---APRVNISAKTGRAVDKLVPALETALESWDTRIPTGRL 393 (472)
T ss_pred C--C---CCEEEEECCCCCCHHHHHHHHHHHHHHhcccCCHHHH
Confidence 1 1 1223467888899999999999999887766555444
No 27
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.83 E-value=5.4e-19 Score=132.02 Aligned_cols=164 Identities=21% Similarity=0.221 Sum_probs=99.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc-eEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ-VVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (225)
+|+++|.+|+|||||+|+|.+.... + ...++.|.......+.+ .+. .+.+|||||+.+.......+...+.+.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~-v-~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~--- 75 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK-I-ADYPFTTLVPNLGVVRV-DDGRSFVVADIPGLIEGASEGKGLGHRFLRH--- 75 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcc-c-cCCCccccCCcceEEEc-CCCCeEEEEecCcccCcccccCCchHHHHHH---
Confidence 5899999999999999999986641 2 22344566666556666 454 899999999864332222222222222
Q ss_pred cCCCccEEEEEEeCCCC-CCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc-
Q 036158 100 TKDGIHAVLVVFSVRNR-FSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC- 176 (225)
Q Consensus 100 ~~~~~~~ii~v~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 176 (225)
...+|++++|+|+.+. -+... ..+++.+..........|+++|+||+|+.+.. ...+. .....+..
T Consensus 76 -~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~--------~~~~~~~~~ 144 (170)
T cd01898 76 -IERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEE--ELFEL--------LKELLKELW 144 (170)
T ss_pred -HHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCch--hhHHH--------HHHHHhhCC
Confidence 2357999999999743 12222 23444444432111247899999999976543 32222 22233332
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV 207 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~ 207 (225)
+..++ ..|+..+.+++++++.+.++
T Consensus 145 ~~~~~------~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 145 GKPVF------PISALTGEGLDELLRKLAEL 169 (170)
T ss_pred CCCEE------EEecCCCCCHHHHHHHHHhh
Confidence 22222 34556678999999988654
No 28
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.83 E-value=1.3e-19 Score=133.46 Aligned_cols=156 Identities=21% Similarity=0.256 Sum_probs=105.9
Q ss_pred EEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCC
Q 036158 23 VLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKD 102 (225)
Q Consensus 23 ~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~ 102 (225)
+++|.+|+|||||+|+|++...... ...+++|.........+ .+..+.+|||||+.+... .....+.........
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~-~~~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~ 75 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIV-EDTPGVTRDRIYGEAEW-GGREFILIDTGGIEPDDE---GISKEIREQAELAIE 75 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEee-cCCCCceeCceeEEEEE-CCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHH
Confidence 4789999999999999998764323 23456677777777777 778999999999986532 223333334444456
Q ss_pred CccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEE
Q 036158 103 GIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVL 182 (225)
Q Consensus 103 ~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (225)
.+|++++|+++.++.+..+..+.++++.. ..|+++|+||+|..... .. ...+...+..
T Consensus 76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~-----~~piiiv~nK~D~~~~~--~~------------~~~~~~~~~~--- 133 (157)
T cd01894 76 EADVILFVVDGREGLTPADEEIAKYLRKS-----KKPVILVVNKVDNIKEE--DE------------AAEFYSLGFG--- 133 (157)
T ss_pred hCCEEEEEEeccccCCccHHHHHHHHHhc-----CCCEEEEEECcccCChH--HH------------HHHHHhcCCC---
Confidence 78999999999766666666666666553 37999999999986542 11 1112222221
Q ss_pred eeCCCccccccHHHHHHHHHHHHHH
Q 036158 183 FDNKTKDTAKRTEQVGKLLSLVNSV 207 (225)
Q Consensus 183 ~~~~~~~~~~~~~~v~~l~~~i~~~ 207 (225)
.....|+..+.+++++++.+.+.
T Consensus 134 --~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 134 --EPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred --CeEEEecccCCCHHHHHHHHHhh
Confidence 12334556678999999988653
No 29
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=2.6e-19 Score=154.03 Aligned_cols=165 Identities=20% Similarity=0.213 Sum_probs=118.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
...++|+|+|.+|+|||||+|+|++...... ...++.|++.......+ .+..+.||||||+... ...+...+...
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v-~~~~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~---~~~~~~~~~~~ 110 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVV-EDVPGVTRDRVSYDAEW-NGRRFTVVDTGGWEPD---AKGLQASVAEQ 110 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccc-cCCCCCCEeeEEEEEEE-CCcEEEEEeCCCcCCc---chhHHHHHHHH
Confidence 3457899999999999999999998765333 34667788877777787 7889999999998632 12233445555
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
+..+...+|++|+|+|+.++.+..+..++.+++.. ..|+++|+||+|..... .. ..+.. ..
T Consensus 111 ~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~-----~~piilV~NK~Dl~~~~-~~------------~~~~~-~~ 171 (472)
T PRK03003 111 AEVAMRTADAVLFVVDATVGATATDEAVARVLRRS-----GKPVILAANKVDDERGE-AD------------AAALW-SL 171 (472)
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECccCCccc-hh------------hHHHH-hc
Confidence 55566788999999999877777777777777642 38999999999975321 01 11111 11
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
+.. .....||.++.++++|++.|.+.+.+
T Consensus 172 g~~-----~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 172 GLG-----EPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred CCC-----CeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 221 12356788889999999999887755
No 30
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.82 E-value=5.7e-19 Score=133.37 Aligned_cols=127 Identities=17% Similarity=0.312 Sum_probs=86.6
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
....++|+++|.+|+|||||+|+|++...........+.|..+..+.. + ..+.+|||||+........+ ...+..
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~---~-~~~~liDtpG~~~~~~~~~~-~~~~~~ 89 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV---N-DGFRLVDLPGYGYAKVSKEE-KEKWQK 89 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe---C-CcEEEEeCCCCccccCChhH-HHHHHH
Confidence 366789999999999999999999987522222334556666654433 2 36999999998765332221 122221
Q ss_pred HH---hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158 96 CI---GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED 152 (225)
Q Consensus 96 ~~---~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~ 152 (225)
.+ ......+|++++|+|+..+++..+.+++..+... ..|+++++||+|....
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~-----~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRER-----GIPVLIVLTKADKLKK 144 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccCCH
Confidence 11 1223456899999999877888887776666542 3799999999998644
No 31
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.82 E-value=6.3e-20 Score=139.66 Aligned_cols=167 Identities=20% Similarity=0.277 Sum_probs=113.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccc----------------cCCCCCceeEEEEEEEE--eeCCceEEEEeCCCC
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKS----------------KAGSSGVTKTCEMQRTM--LKDGQVVNVIDTPGL 79 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~----------------~~~~~~~t~~~~~~~~~--~~~~~~~~liDtPG~ 79 (225)
+.++|+++|+.++|||||+++|++...... .....+.|.......+. . .+..++++||||+
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~-~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNE-NNRKITLIDTPGH 80 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTE-SSEEEEEEEESSS
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccc-cccceeecccccc
Confidence 468999999999999999999986542111 00123455555555665 5 7889999999997
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHH
Q 036158 80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLED 159 (225)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~ 159 (225)
.++ ...+......+|++|+|+|+.+.......+.+..+... ..|+++++||+|... ..+.+
T Consensus 81 ~~f-----------~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~-----~~p~ivvlNK~D~~~---~~~~~ 141 (188)
T PF00009_consen 81 EDF-----------IKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILREL-----GIPIIVVLNKMDLIE---KELEE 141 (188)
T ss_dssp HHH-----------HHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT-----T-SEEEEEETCTSSH---HHHHH
T ss_pred cce-----------eecccceecccccceeeeeccccccccccccccccccc-----ccceEEeeeeccchh---hhHHH
Confidence 532 22222335577999999999878888888888888764 368999999999872 25555
Q ss_pred HhhhcCCchHH-HHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 160 YLGRECPKPLK-EILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 160 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
...+ +. .+++..+..--.+-+..+.|+.++.++++|++.|.+.++
T Consensus 142 ~~~~-----~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 142 IIEE-----IKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHH-----HHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HHHH-----HHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 5444 44 444554332100011223466778999999999988765
No 32
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.82 E-value=3e-18 Score=127.07 Aligned_cols=162 Identities=21% Similarity=0.237 Sum_probs=99.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccc-cCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKS-KAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
+.|+++|.+|+|||||+|+|++...... ....++.|.........++.+..+.+|||||..+ +...+.
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-----------~~~~~~ 69 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-----------FIKNML 69 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH-----------HHHHHH
Confidence 3689999999999999999997542111 1123355666666666663377999999999642 222223
Q ss_pred hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158 99 MTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 178 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (225)
.....+|++++|+|+++.......+.+..+... + .+|+++++||+|..... .......+ +.+.++..+.
T Consensus 70 ~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~-~---~~~~ilv~NK~Dl~~~~--~~~~~~~~-----~~~~~~~~~~ 138 (164)
T cd04171 70 AGAGGIDLVLLVVAADEGIMPQTREHLEILELL-G---IKRGLVVLTKADLVDED--WLELVEEE-----IRELLAGTFL 138 (164)
T ss_pred hhhhcCCEEEEEEECCCCccHhHHHHHHHHHHh-C---CCcEEEEEECccccCHH--HHHHHHHH-----HHHHHHhcCc
Confidence 345678999999999754444444444443332 2 24899999999976431 22222222 3444433211
Q ss_pred cEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158 179 RCVLFDNKTKDTAKRTEQVGKLLSLVNS 206 (225)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~v~~l~~~i~~ 206 (225)
.. ....+.|+.++.+++++++.+.+
T Consensus 139 ~~---~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 139 AD---APIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred CC---CcEEEEeCCCCcCHHHHHHHHhh
Confidence 10 11234556677999999988754
No 33
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.81 E-value=8.4e-19 Score=144.94 Aligned_cols=162 Identities=22% Similarity=0.204 Sum_probs=106.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
..++|+++|.+|+|||||+|+|++.... + ...+++|.+.....+.++++..+.||||||+... ......+.+...+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~-v-~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~--l~~~lie~f~~tl 263 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVY-A-ADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD--LPHELVAAFRATL 263 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcee-e-ccCCccccCCEEEEEEeCCCceEEEEecCccccc--CCHHHHHHHHHHH
Confidence 4589999999999999999999998742 2 2345667777667777766789999999998532 1223334444433
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEEGA-AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
. ....+|++++|+|+.++....+.. +.+.+... +. ...|+++|+||+|..... ... ... ..
T Consensus 264 e-~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~-~~~piIlV~NK~Dl~~~~--~v~------------~~~-~~ 325 (351)
T TIGR03156 264 E-EVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GA-EDIPQLLVYNKIDLLDEP--RIE------------RLE-EG 325 (351)
T ss_pred H-HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-cc-CCCCEEEEEEeecCCChH--hHH------------HHH-hC
Confidence 2 355789999999997555444433 23344442 21 237999999999976431 111 111 10
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV 207 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~ 207 (225)
.. .....|+.++.++++|++.|.++
T Consensus 326 ~~------~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 326 YP------EAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred CC------CEEEEEccCCCCHHHHHHHHHhh
Confidence 11 12345677789999999998764
No 34
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.81 E-value=8e-19 Score=130.02 Aligned_cols=164 Identities=21% Similarity=0.255 Sum_probs=103.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
..+|+++|.+|+|||||+|++++........ ....+.......... .+..+.+|||||+.+...... ..+.....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~---~~~~~~~~ 77 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSP-KPQTTRNRIRGIYTD-DDAQIIFVDTPGIHKPKKKLG---ERMVKAAW 77 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccC-CCCceeceEEEEEEc-CCeEEEEEECCCCCcchHHHH---HHHHHHHH
Confidence 4789999999999999999999987543322 223343333333333 557899999999886532222 12333333
Q ss_pred hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC-
Q 036158 99 MTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD- 177 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 177 (225)
.....+|++++|+++....+.....++..+... ..|+++|+||+|+.... ....+.... +....+
T Consensus 78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~~~~-~~~~~~~~~--------~~~~~~~ 143 (168)
T cd04163 78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKS-----KTPVILVLNKIDLVKDK-EDLLPLLEK--------LKELGPF 143 (168)
T ss_pred HHHHhCCEEEEEEECCCccCchHHHHHHHHHHh-----CCCEEEEEEchhccccH-HHHHHHHHH--------HHhccCC
Confidence 456678999999999855555565666655543 37999999999976322 123332222 222211
Q ss_pred CcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158 178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSV 207 (225)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~ 207 (225)
.++ ...++..+.++++|++.|.++
T Consensus 144 ~~~------~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 144 AEI------FPISALKGENVDELLEEIVKY 167 (168)
T ss_pred Cce------EEEEeccCCChHHHHHHHHhh
Confidence 122 233445668899999998764
No 35
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.81 E-value=4.2e-19 Score=147.00 Aligned_cols=167 Identities=22% Similarity=0.274 Sum_probs=119.4
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158 14 SPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI 93 (225)
Q Consensus 14 ~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (225)
......++++++|+||+|||||+|+|++.+...+. .-+++|++.-...+.+ +|.++.|+||.|+-+....-+.+. +
T Consensus 212 ~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVT-dI~GTTRDviee~i~i-~G~pv~l~DTAGiRet~d~VE~iG--I 287 (454)
T COG0486 212 KILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVT-DIAGTTRDVIEEDINL-NGIPVRLVDTAGIRETDDVVERIG--I 287 (454)
T ss_pred hhhhcCceEEEECCCCCcHHHHHHHHhcCCceEec-CCCCCccceEEEEEEE-CCEEEEEEecCCcccCccHHHHHH--H
Confidence 44567899999999999999999999999987774 4788999999999999 999999999999986543223222 2
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
.++ ......+|.++||+|+...++..+...++.+.. .+|+++|+||.|+.... .... .
T Consensus 288 eRs-~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~------~~~~i~v~NK~DL~~~~--~~~~-------------~ 345 (454)
T COG0486 288 ERA-KKAIEEADLVLFVLDASQPLDKEDLALIELLPK------KKPIIVVLNKADLVSKI--ELES-------------E 345 (454)
T ss_pred HHH-HHHHHhCCEEEEEEeCCCCCchhhHHHHHhccc------CCCEEEEEechhccccc--ccch-------------h
Confidence 222 234457799999999986677777777772222 38999999999988764 1110 0
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
+..... +....|+.++.+++.|.+.|.+++...
T Consensus 346 -~~~~~~----~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 346 -KLANGD----AIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred -hccCCC----ceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 101100 123345556678888888887777655
No 36
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.81 E-value=1.7e-18 Score=129.04 Aligned_cols=161 Identities=16% Similarity=0.148 Sum_probs=101.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK--DGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
+.|+++|.+|+|||||+|+|++...... ...+.|........... .+..+.+|||||.... ....
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~-----------~~~~ 67 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF-----------TNMR 67 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccc--cCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH-----------HHHH
Confidence 4699999999999999999998764322 23345555554555542 3678999999996422 1222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH---
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ--- 174 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~--- 174 (225)
......+|++++|+|+.+.........+..+.. ...|+++|+||+|..... .+..... +.....
T Consensus 68 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~-----~~~p~ivv~NK~Dl~~~~---~~~~~~~-----~~~~~~~~~ 134 (168)
T cd01887 68 ARGASLTDIAILVVAADDGVMPQTIEAIKLAKA-----ANVPFIVALNKIDKPNAN---PERVKNE-----LSELGLQGE 134 (168)
T ss_pred HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHH-----cCCCEEEEEEceeccccc---HHHHHHH-----HHHhhcccc
Confidence 234457899999999975555555555555543 237999999999976432 1222111 111111
Q ss_pred -HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 175 -LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 175 -~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
..+..+ ...+.|+..+.++++|++.|.++..+
T Consensus 135 ~~~~~~~----~~~~~Sa~~~~gi~~l~~~l~~~~~~ 167 (168)
T cd01887 135 DEWGGDV----QIVPTSAKTGEGIDDLLEAILLLAEK 167 (168)
T ss_pred ccccCcC----cEEEeecccCCCHHHHHHHHHHhhhc
Confidence 111111 12344566778999999999877653
No 37
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.81 E-value=8.1e-20 Score=141.54 Aligned_cols=183 Identities=17% Similarity=0.180 Sum_probs=115.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
..++++|+++|.||+|||||||+|+......+.. ....|.........+ ++..++||||||+++....+.+....+
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~-vg~~t~~~~~~~~~~-~~~~l~lwDtPG~gdg~~~D~~~r~~~-- 111 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSK-VGVGTDITTRLRLSY-DGENLVLWDTPGLGDGKDKDAEHRQLY-- 111 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeee-cccCCCchhhHHhhc-cccceEEecCCCcccchhhhHHHHHHH--
Confidence 4567899999999999999999999655433321 122233333333344 678999999999998865555444444
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC----------cccHHHHhhhcC
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN----------DETLEDYLGREC 165 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~----------~~~~~~~~~~~~ 165 (225)
..+.++.|.++++++++++.-..+..++..+.-... .+++++++|++|...+. ...++++.++ .
T Consensus 112 --~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~---~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~-k 185 (296)
T COG3596 112 --RDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGL---DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE-K 185 (296)
T ss_pred --HHHhhhccEEEEeccCCCccccCCHHHHHHHHHhcc---CceeEEEEehhhhhccccccccccCCCCHHHHHHHHH-H
Confidence 445566799999999987755556666665554332 27999999999977552 1233444333 1
Q ss_pred CchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCC
Q 036158 166 PKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQP 215 (225)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~ 215 (225)
...+.+.++. ..+....+.....++++|+..+...++.+...+
T Consensus 186 ~~~~~~~~q~-------V~pV~~~~~r~~wgl~~l~~ali~~lp~e~rs~ 228 (296)
T COG3596 186 AEALGRLFQE-------VKPVVAVSGRLPWGLKELVRALITALPVEARSP 228 (296)
T ss_pred HHHHHHHHhh-------cCCeEEeccccCccHHHHHHHHHHhCcccccch
Confidence 1112222222 112222223445899999999998888665554
No 38
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.81 E-value=4e-18 Score=125.32 Aligned_cols=155 Identities=22% Similarity=0.286 Sum_probs=102.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (225)
++|+++|++|+|||||+|++++...... ...+++|.......+.+ .+..+.+|||||+.+....... ........
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~---~~~~~~~~ 76 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIV-SDIAGTTRDVIEESIDI-GGIPVRLIDTAGIRETEDEIEK---IGIERARE 76 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEec-cCCCCCccceEEEEEEe-CCEEEEEEECCCcCCCcchHHH---HHHHHHHH
Confidence 5899999999999999999998764322 23456666665556666 6778999999999866432111 11111223
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158 100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 179 (225)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (225)
....+|++++|+|+..+.+..+...+.. ....|+++|+||+|..... .. ....+..+
T Consensus 77 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~--~~--------------~~~~~~~~ 133 (157)
T cd04164 77 AIEEADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDS--EL--------------LSLLAGKP 133 (157)
T ss_pred HHhhCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcc--cc--------------ccccCCCc
Confidence 3457899999999986666555544433 1238999999999987543 11 11122223
Q ss_pred EEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158 180 CVLFDNKTKDTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 180 ~~~~~~~~~~~~~~~~~v~~l~~~i~~~~ 208 (225)
+. ..|+.++.++++|++.|.+++
T Consensus 134 ~~------~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 134 II------AISAKTGEGLDELKEALLELA 156 (157)
T ss_pred eE------EEECCCCCCHHHHHHHHHHhh
Confidence 33 334556689999999987764
No 39
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.81 E-value=3.4e-18 Score=137.11 Aligned_cols=152 Identities=22% Similarity=0.293 Sum_probs=103.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCC------CCCceeEEEEEE--EEeeCC--ceEEEEeCCCCCCCCCCcHH
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAG------SSGVTKTCEMQR--TMLKDG--QVVNVIDTPGLFDSSADSEF 88 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~------~~~~t~~~~~~~--~~~~~~--~~~~liDtPG~~~~~~~~~~ 88 (225)
.++|+|+|.+|+|||||+|+|++......... ....|....... ++. ++ ..++||||||+++... +..
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~-~g~~~~l~iiDTpGfgd~~~-~~~ 81 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEE-NGVKLKLTVIDTPGFGDNIN-NSD 81 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEE-CCEEEEEEEEecCCcccccc-chh
Confidence 57999999999999999999999876543221 123333333333 333 34 3799999999998753 333
Q ss_pred HHHHHHHHHh------------------hcCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCC
Q 036158 89 VSKEIVKCIG------------------MTKDGIHAVLVVFSVR-NRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDE 149 (225)
Q Consensus 89 ~~~~~~~~~~------------------~~~~~~~~ii~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~ 149 (225)
.++.+..++. .....+|+++|+++.. .++...+.++++.+.+ ..|+++|+||+|.
T Consensus 82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~------~v~vi~VinK~D~ 155 (276)
T cd01850 82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK------RVNIIPVIAKADT 155 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc------cCCEEEEEECCCc
Confidence 4444433221 1123689999999875 3677888888888765 2799999999998
Q ss_pred CCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeC
Q 036158 150 LEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDN 185 (225)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (225)
+... ....+.+. +++.++..+.+++.|..
T Consensus 156 l~~~--e~~~~k~~-----i~~~l~~~~i~~~~~~~ 184 (276)
T cd01850 156 LTPE--ELKEFKQR-----IMEDIEEHNIKIYKFPE 184 (276)
T ss_pred CCHH--HHHHHHHH-----HHHHHHHcCCceECCCC
Confidence 7543 44444444 78888888888777654
No 40
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.80 E-value=1.6e-18 Score=148.21 Aligned_cols=158 Identities=22% Similarity=0.247 Sum_probs=115.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (225)
++|+++|.+|+|||||+|+|++.....+ ...++.|++.......+ ++..+.||||||+.+.. ......+......
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v-~~~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~ 76 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIV-ADTPGVTRDRIYGEAEW-LGREFILIDTGGIEPDD---DGFEKQIREQAEL 76 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee-CCCCCCcccceEEEEEE-CCcEEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence 5899999999999999999998875433 33667788888888888 77999999999998622 2234445555555
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158 100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 179 (225)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (225)
+...+|++|+|+|+.++.+..+.++.+++++. ..|+++|+||+|..... .. ..+.. ..+.
T Consensus 77 ~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~~~~-~~------------~~~~~-~lg~- 136 (435)
T PRK00093 77 AIEEADVILFVVDGRAGLTPADEEIAKILRKS-----NKPVILVVNKVDGPDEE-AD------------AYEFY-SLGL- 136 (435)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCcEEEEEECccCccch-hh------------HHHHH-hcCC-
Confidence 66788999999999877888887788887764 37999999999954311 11 11111 1221
Q ss_pred EEEeeCCCccccccHHHHHHHHHHHHH
Q 036158 180 CVLFDNKTKDTAKRTEQVGKLLSLVNS 206 (225)
Q Consensus 180 ~~~~~~~~~~~~~~~~~v~~l~~~i~~ 206 (225)
......|+.++.++++|++.+.+
T Consensus 137 ----~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 137 ----GEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred ----CCCEEEEeeCCCCHHHHHHHHHh
Confidence 12345577788999999999876
No 41
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.80 E-value=2.1e-18 Score=154.84 Aligned_cols=165 Identities=19% Similarity=0.194 Sum_probs=119.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
...++|+++|.+|+|||||+|+|++.....+ ...+++|++......++ ++..+.+|||||+.... +.+...+...
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv-~~~pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~ 347 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVV-EDTPGVTRDRVSYDAEW-AGTDFKLVDTGGWEADV---EGIDSAIASQ 347 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCeeEEEEEEEEEE-CCEEEEEEeCCCcCCCC---ccHHHHHHHH
Confidence 3457899999999999999999998764333 34677888887777788 78899999999987422 2234445555
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
+..+...+|++|+|+|+...++..+..+++.++.. .+|+++|+||+|..... .. ..+.. ..
T Consensus 348 ~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~-----~~pvIlV~NK~D~~~~~-~~------------~~~~~-~l 408 (712)
T PRK09518 348 AQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRA-----GKPVVLAVNKIDDQASE-YD------------AAEFW-KL 408 (712)
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc-----CCCEEEEEECcccccch-hh------------HHHHH-Hc
Confidence 55667788999999999877888887777777642 48999999999975321 00 01111 11
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
+.. ...+.||.++.++++|++.|.+.+.+
T Consensus 409 g~~-----~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 409 GLG-----EPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCC-----CeEEEECCCCCCchHHHHHHHHhccc
Confidence 211 12356788899999999999887755
No 42
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.80 E-value=5.9e-18 Score=152.03 Aligned_cols=183 Identities=16% Similarity=0.170 Sum_probs=120.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH-
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC- 96 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~- 96 (225)
..++|+++|.+|+|||||+|+|++.....+ ...+++|++.....+.+ ++..+.||||||+......... .+.+...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v-~~~~gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~~~~-~e~~~~~r 525 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVV-NDLAGTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHKLTG-AEYYSSLR 525 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccc-CCCCCCCcCcceeEEEE-CCCEEEEEECCCcccCcccchh-HHHHHHHH
Confidence 458999999999999999999999874323 23566777766666677 7888999999998643221110 1111111
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
...+...+|++++|+|+..+.+..+..++..+.+ ...|+++|+||||+.... ..+.+... +...+...
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~~i~~~~~~-----~~~piIiV~NK~DL~~~~--~~~~~~~~-----~~~~l~~~ 593 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDLKVMSMAVD-----AGRALVLVFNKWDLMDEF--RRQRLERL-----WKTEFDRV 593 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEEchhcCChh--HHHHHHHH-----HHHhccCC
Confidence 1234567899999999987888877776665543 237999999999986532 22222111 22211111
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCCCHHH
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEI 220 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~~~~~ 220 (225)
. +......||.++.++++|++.+.+.........-+..+
T Consensus 594 ~-----~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~~i~T~~L 632 (712)
T PRK09518 594 T-----WARRVNLSAKTGWHTNRLAPAMQEALESWDQRIPTGKL 632 (712)
T ss_pred C-----CCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCChHHH
Confidence 1 12223457888899999999999998876665544433
No 43
>PRK04213 GTP-binding protein; Provisional
Probab=99.80 E-value=5.7e-18 Score=130.15 Aligned_cols=172 Identities=20% Similarity=0.225 Sum_probs=103.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH-
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK- 95 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~- 95 (225)
...++|+++|.+|+|||||+|+|.+... .. ...+++|.... .+.+ . .+.+|||||++....-.....+.+..
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~-~~-~~~~~~t~~~~--~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKV-RV-GKRPGVTRKPN--HYDW-G--DFILTDLPGFGFMSGVPKEVQEKIKDE 79 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-cc-CCCCceeeCce--EEee-c--ceEEEeCCccccccccCHHHHHHHHHH
Confidence 4568999999999999999999998763 22 22345554433 3333 2 68999999986544322222233332
Q ss_pred ---HHhhcCCCccEEEEEEeCCCCCC-----------HHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHh
Q 036158 96 ---CIGMTKDGIHAVLVVFSVRNRFS-----------EEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL 161 (225)
Q Consensus 96 ---~~~~~~~~~~~ii~v~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~ 161 (225)
++......++++++|+|.+.... ..+.+++..+.. ...|+++|+||+|+.... ++.
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~~~~----~~~- 149 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-----LGIPPIVAVNKMDKIKNR----DEV- 149 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-----cCCCeEEEEECccccCcH----HHH-
Confidence 33334456789999999863211 122333443332 137999999999975432 111
Q ss_pred hhcCCchHHHHHHHcCC--cEEEe-eCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158 162 GRECPKPLKEILQLCDN--RCVLF-DNKTKDTAKRTEQVGKLLSLVNSVIVQNGG 213 (225)
Q Consensus 162 ~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~ 213 (225)
+.++.+..+. .+..+ ....+.||.++ +++++++.|.+.+.+..+
T Consensus 150 -------~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~ 196 (201)
T PRK04213 150 -------LDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR 196 (201)
T ss_pred -------HHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence 2222233332 11111 12346788889 999999999887766544
No 44
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.80 E-value=1.7e-18 Score=131.32 Aligned_cols=165 Identities=20% Similarity=0.197 Sum_probs=106.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccccccCC--------------CCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCc
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKSKAG--------------SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS 86 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~ 86 (225)
+|+|+|.+|+|||||+|+|++......... ..+.|.........+ .+..+.+|||||+.+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~---- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHEDF---- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHHH----
Confidence 589999999999999999998765332111 123445555555566 5778999999997532
Q ss_pred HHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCC
Q 036158 87 EFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECP 166 (225)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~ 166 (225)
...+..+...+|++++|+|+.+.......+.+..+.. ...|+++++||+|..... ........
T Consensus 76 -------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~~i~iv~nK~D~~~~~--~~~~~~~~--- 138 (189)
T cd00881 76 -------SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE-----GGLPIIVAINKIDRVGEE--DLEEVLRE--- 138 (189)
T ss_pred -------HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH-----CCCCeEEEEECCCCcchh--cHHHHHHH---
Confidence 1222233447799999999986666666666655544 238999999999987632 33333333
Q ss_pred chHHHHHHHcCCc--------EEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 167 KPLKEILQLCDNR--------CVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 167 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
+++.++..+.. .....+..+.|+..+.++++++.++.+.++
T Consensus 139 --~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 139 --IKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred --HHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 44444433210 001122345566778899999999987653
No 45
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.79 E-value=9.1e-18 Score=128.67 Aligned_cols=175 Identities=19% Similarity=0.163 Sum_probs=109.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCC---ceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSG---VTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
++|+++|.+|+|||||+|+|++...........+ +|..... +..+....+.+|||||+.+.....+++.+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~---- 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTP--YPHPKFPNVTLWDLPGIGSTAFPPDDYLEE---- 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCcee--eecCCCCCceEEeCCCCCcccCCHHHHHHH----
Confidence 6899999999999999999998653222221222 1222221 222224579999999998754433333221
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcc-------cHHHHhhhcCCchH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDE-------TLEDYLGRECPKPL 169 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~-------~~~~~~~~~~~~~~ 169 (225)
.....+|++++|.+ .+++..+..+++.+++. .+|+++|+||+|...+.+. ..++++++ ..+.+
T Consensus 76 --~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~-----~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~-i~~~~ 145 (197)
T cd04104 76 --MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCM-----GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQE-IRDNC 145 (197)
T ss_pred --hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHh-----CCCEEEEEecccchhhhhhccccccccHHHHHHH-HHHHH
Confidence 13457799988854 36888888888888875 2789999999998654311 12344444 33335
Q ss_pred HHHHHHcCC---cEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCC
Q 036158 170 KEILQLCDN---RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQ 214 (225)
Q Consensus 170 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~ 214 (225)
.+.+...+. .++..+.... .+.++..|.+.+..-+.+..++
T Consensus 146 ~~~~~~~~~~~p~v~~vS~~~~----~~~~~~~l~~~~~~~l~~~~~~ 189 (197)
T cd04104 146 LENLQEAGVSEPPVFLVSNFDP----SDYDFPKLRETLLKDLPAHKRH 189 (197)
T ss_pred HHHHHHcCCCCCCEEEEeCCCh----hhcChHHHHHHHHHHhhHHHHH
Confidence 555554332 2333333321 3478999999998888876654
No 46
>PRK11058 GTPase HflX; Provisional
Probab=99.78 E-value=7.3e-18 Score=142.42 Aligned_cols=166 Identities=18% Similarity=0.129 Sum_probs=108.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
.++|+++|.+|+|||||+|+|++.... + ...+++|.+.....+.+++...+.++||||+... ......+.+...+
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~-v-~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~--lp~~lve~f~~tl- 271 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVY-A-ADQLFATLDPTLRRIDVADVGETVLADTVGFIRH--LPHDLVAAFKATL- 271 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcee-e-ccCCCCCcCCceEEEEeCCCCeEEEEecCccccc--CCHHHHHHHHHHH-
Confidence 478999999999999999999998754 2 2345567777666777744458999999998532 1233444454433
Q ss_pred hcCCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158 99 MTKDGIHAVLVVFSVRNRFSEEEGAA-IHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
.....+|++|+|+|+.++........ .+++.+. +. ...|+++|+||+|+.... . . .... . ..+
T Consensus 272 ~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el-~~-~~~pvIiV~NKiDL~~~~--~-~-~~~~---------~-~~~ 335 (426)
T PRK11058 272 QETRQATLLLHVVDAADVRVQENIEAVNTVLEEI-DA-HEIPTLLVMNKIDMLDDF--E-P-RIDR---------D-EEN 335 (426)
T ss_pred HHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHh-cc-CCCCEEEEEEcccCCCch--h-H-HHHH---------H-hcC
Confidence 34568899999999976544444332 3344443 21 247999999999986431 1 0 0000 0 112
Q ss_pred CcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
.++ ....|+.++.++++|++.|.+.+..
T Consensus 336 ~~~-----~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 336 KPI-----RVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred CCc-----eEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 111 1235777889999999999988754
No 47
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.78 E-value=9.8e-18 Score=129.16 Aligned_cols=164 Identities=25% Similarity=0.267 Sum_probs=101.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
.+.++|+|+|++|||||||+|+|++...... .....|.......+.+++...+.+|||||+.+.. .....+.+...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--~~~~~~~~~~~ 114 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAE--DQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDL--PHQLVEAFRST 114 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccC--CccceeccceeEEEEecCCceEEEeCCCccccCC--CHHHHHHHHHH
Confidence 4568999999999999999999998764222 2234455555555666344489999999986432 12222333333
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGA-AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
+ .....+|++++|+|+.++....+.. +.+.+... +. ...|+++|+||+|..+.. ... .....
T Consensus 115 ~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~-~~-~~~~viiV~NK~Dl~~~~--~~~------------~~~~~ 177 (204)
T cd01878 115 L-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKEL-GA-EDIPMILVLNKIDLLDDE--ELE------------ERLEA 177 (204)
T ss_pred H-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHc-Cc-CCCCEEEEEEccccCChH--HHH------------HHhhc
Confidence 2 2345789999999997554444332 33444433 21 137999999999986543 111 11111
Q ss_pred cCCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158 176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV 207 (225)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~ 207 (225)
.+.+ ....|+.++.+++++++.|.+.
T Consensus 178 ~~~~------~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 178 GRPD------AVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred CCCc------eEEEEcCCCCCHHHHHHHHHhh
Confidence 1112 2344556678999999888653
No 48
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.78 E-value=7.4e-18 Score=125.56 Aligned_cols=161 Identities=11% Similarity=0.032 Sum_probs=96.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccccc--cCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKS--KAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
+|+++|++|+|||||+|+|.+...... ......+|.......+.+ ++..+.+|||||..+. ...+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~-----------~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQESL-----------RSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChhh-----------HHHHH
Confidence 589999999999999999986532111 111223455555556676 6789999999997532 22233
Q ss_pred hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 99 MTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
.....+|++++|+|+.+.. .......++.+.+.. ....|+++++||+|..... ..++.... +....+..
T Consensus 69 ~~~~~~~~~v~vvd~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~--~~~~~~~~-----~~~~~~~~ 139 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRE--RFEESKSALEKVLRNEALEGVPLLILANKQDLPDAL--SVEEIKEV-----FQDKAEEI 139 (167)
T ss_pred HHhCCCCEEEEEEECchHH--HHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCC--CHHHHHHH-----hccccccc
Confidence 4466889999999986322 122223333333322 1247999999999975442 22222111 11111111
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHH
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVN 205 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~ 205 (225)
+.... ...+.|+.++.++++++++|.
T Consensus 140 ~~~~~---~~~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 140 GRRDC---LVLPVSALEGTGVREGIEWLV 165 (167)
T ss_pred cCCce---EEEEeeCCCCcCHHHHHHHHh
Confidence 21111 123456777899999999885
No 49
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.78 E-value=1.9e-17 Score=122.08 Aligned_cols=156 Identities=21% Similarity=0.265 Sum_probs=99.1
Q ss_pred EEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCC
Q 036158 24 LVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDG 103 (225)
Q Consensus 24 v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (225)
|+|.+|+|||||+|++.+.... . ...+++|.......+++ ++..+.+|||||+.+...... ...+....... ..
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~-~-~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~~-~~ 74 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQK-V-GNWPGVTVEKKEGRFKL-GGKEIEIVDLPGTYSLSPYSE--DEKVARDFLLG-EK 74 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCccc-c-cCCCCcccccceEEEee-CCeEEEEEECCCccccCCCCh--hHHHHHHHhcC-CC
Confidence 5899999999999999987632 2 23466777777777777 678999999999976543221 11222221112 58
Q ss_pred ccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEe
Q 036158 104 IHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLF 183 (225)
Q Consensus 104 ~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (225)
+|++++|+|+.+. .. ....+..+.+ ...|+++|+||+|..... ..... ..++....+.+++
T Consensus 75 ~d~vi~v~d~~~~-~~-~~~~~~~~~~-----~~~~~iiv~NK~Dl~~~~--~~~~~--------~~~~~~~~~~~~~-- 135 (158)
T cd01879 75 PDLIVNVVDATNL-ER-NLYLTLQLLE-----LGLPVVVALNMIDEAEKR--GIKID--------LDKLSELLGVPVV-- 135 (158)
T ss_pred CcEEEEEeeCCcc-hh-HHHHHHHHHH-----cCCCEEEEEehhhhcccc--cchhh--------HHHHHHhhCCCeE--
Confidence 8999999999742 22 2233333332 237999999999986543 22211 2233333343333
Q ss_pred eCCCccccccHHHHHHHHHHHHHHH
Q 036158 184 DNKTKDTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 184 ~~~~~~~~~~~~~v~~l~~~i~~~~ 208 (225)
..|+..+.++.++++.+.++.
T Consensus 136 ----~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 136 ----PTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred ----EEEccCCCCHHHHHHHHHHHh
Confidence 345556689999999987764
No 50
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.78 E-value=1.4e-17 Score=123.96 Aligned_cols=161 Identities=16% Similarity=0.122 Sum_probs=99.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcC
Q 036158 22 LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTK 101 (225)
Q Consensus 22 i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~ 101 (225)
|+++|.+|+|||||++++.+...... ..+|.......+.. .+..+.+|||||.... ...+..++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~----~~pt~g~~~~~i~~-~~~~l~i~Dt~G~~~~-----------~~~~~~~~ 65 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLES----VVPTTGFNSVAIPT-QDAIMELLEIGGSQNL-----------RKYWKRYL 65 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCccc----ccccCCcceEEEee-CCeEEEEEECCCCcch-----------hHHHHHHH
Confidence 78999999999999999997653211 11222222334444 6678999999997543 12223456
Q ss_pred CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEE
Q 036158 102 DGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCV 181 (225)
Q Consensus 102 ~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (225)
..+|++++|+|..++.+- .....++.++.......|+++|.||.|..... ...+.... ..+..+....+..+.
T Consensus 66 ~~ad~ii~V~D~t~~~s~--~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~---~~~~~~~~~~~~~~~ 138 (164)
T cd04162 66 SGSQGLIFVVDSADSERL--PLARQELHQLLQHPPDLPLVVLANKQDLPAAR--SVQEIHKE---LELEPIARGRRWILQ 138 (164)
T ss_pred hhCCEEEEEEECCCHHHH--HHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCC--CHHHHHHH---hCChhhcCCCceEEE
Confidence 678999999998743321 12223344443222358999999999975543 33332222 012333333444444
Q ss_pred EeeCCCccccccHHHHHHHHHHHH
Q 036158 182 LFDNKTKDTAKRTEQVGKLLSLVN 205 (225)
Q Consensus 182 ~~~~~~~~~~~~~~~v~~l~~~i~ 205 (225)
.......+|+.++.++.++++.+.
T Consensus 139 ~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 139 GTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred EeeecCCCChhHHHHHHHHHHHHh
Confidence 445566678889999999998764
No 51
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.77 E-value=1.4e-17 Score=127.18 Aligned_cols=168 Identities=18% Similarity=0.204 Sum_probs=106.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccc--------------cccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCC
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAF--------------KSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS 83 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~ 83 (225)
++++|+++|+.++|||||+++|++.... .......+.|.......+++ ++..++++||||+.+
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~-- 77 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD-- 77 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECcCHHH--
Confidence 3589999999999999999999864110 01112456677776666766 778999999999752
Q ss_pred CCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh
Q 036158 84 ADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR 163 (225)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~ 163 (225)
+...+......+|++++|+|+.......+.+.+..+.+. + .+++++++||+|..... ...+....+
T Consensus 78 ---------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~---~~~iIvviNK~D~~~~~-~~~~~~~~~ 143 (195)
T cd01884 78 ---------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV-G---VPYIVVFLNKADMVDDE-ELLELVEME 143 (195)
T ss_pred ---------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-C---CCcEEEEEeCCCCCCcH-HHHHHHHHH
Confidence 222333445578999999999877777777777777653 1 13478899999986321 223333334
Q ss_pred cCCchHHHHHHHcCC-----cEEEeeCCCcccc----ccHHHHHHHHHHHHHH
Q 036158 164 ECPKPLKEILQLCDN-----RCVLFDNKTKDTA----KRTEQVGKLLSLVNSV 207 (225)
Q Consensus 164 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~v~~l~~~i~~~ 207 (225)
+++++...+. ++++.+.....+. .-...+..|++.|.++
T Consensus 144 -----i~~~l~~~g~~~~~v~iipiSa~~g~n~~~~~~w~~~~~~l~~~l~~~ 191 (195)
T cd01884 144 -----VRELLSKYGFDGDNTPIVRGSALKALEGDDPNKWVKKILELLDALDSY 191 (195)
T ss_pred -----HHHHHHHhcccccCCeEEEeeCccccCCCCCCcchhcHhHHHHHHHhC
Confidence 6777766553 3444433221110 0011256788777654
No 52
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.77 E-value=1.7e-17 Score=132.21 Aligned_cols=190 Identities=21% Similarity=0.213 Sum_probs=138.9
Q ss_pred CCcccCCCCCCCCCCCCcee----------------------EEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEE
Q 036158 2 GGRVIDADSKPTSPSNGERN----------------------LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCE 59 (225)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~----------------------i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~ 59 (225)
||.+--.|..|.++.+..++ |+++|.+|+||||||+.+...++ ....++.+|..+.
T Consensus 120 GG~GG~GN~~Fks~~nrAP~~a~~G~~Ge~r~v~LELKllADVGLVG~PNaGKSTlls~vS~AkP--KIadYpFTTL~Pn 197 (369)
T COG0536 120 GGRGGLGNAHFKSSVNRAPRFATPGEPGEERDLRLELKLLADVGLVGLPNAGKSTLLSAVSAAKP--KIADYPFTTLVPN 197 (369)
T ss_pred CCCCCccchhhcCcccCCcccCCCCCCCceEEEEEEEeeecccccccCCCCcHHHHHHHHhhcCC--cccCCccccccCc
Confidence 77777788888877655443 55999999999999999998886 5556888999998
Q ss_pred EEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCC----HHH-HHHHHHHHHHhcc
Q 036158 60 MQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFS----EEE-GAAIHILESLFGK 134 (225)
Q Consensus 60 ~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~----~~~-~~~~~~l~~~~~~ 134 (225)
...+....+..+++-|.||+.+.+.....+..++.+.+..+ -++++|+|+. +.. .++ ..+...|.++-..
T Consensus 198 LGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt----~vL~hviD~s-~~~~~dp~~~~~~i~~EL~~Y~~~ 272 (369)
T COG0536 198 LGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT----RVLLHVIDLS-PIDGRDPIEDYQTIRNELEKYSPK 272 (369)
T ss_pred ccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh----heeEEEEecC-cccCCCHHHHHHHHHHHHHHhhHH
Confidence 88887757778999999999999888888888898888887 8999999987 222 222 3344455554222
Q ss_pred cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 135 KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 135 ~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
=..+|.+||+||+|...+. +.++.+ .+.+.+.+++....+ .|+.++.++++|+..+.+++.+..
T Consensus 273 L~~K~~ivv~NKiD~~~~~-e~~~~~--------~~~l~~~~~~~~~~~-----ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 273 LAEKPRIVVLNKIDLPLDE-EELEEL--------KKALAEALGWEVFYL-----ISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred hccCceEEEEeccCCCcCH-HHHHHH--------HHHHHHhcCCCccee-----eehhcccCHHHHHHHHHHHHHHhh
Confidence 2458999999999965543 233332 233444455443332 455667899999999998888764
No 53
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.77 E-value=2.4e-17 Score=122.66 Aligned_cols=160 Identities=13% Similarity=0.130 Sum_probs=97.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
..++|+++|++|+|||||++++.+...... ..+..+.......+.+ ++ ..+.+|||||.. .+..
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~-----------~~~~ 67 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSER--QGNTIGVDFTMKTLEI-EGKRVKLQIWDTAGQE-----------RFRT 67 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCccc--CCCccceEEEEEEEEE-CCEEEEEEEEECCChH-----------HHHH
Confidence 358999999999999999999987653222 1222223334444555 44 378999999943 2223
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
........+|++++|+|++++.+-.. ..++..+.... ....|+++|.||+|+....+...++ ..++.+
T Consensus 68 ~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~---------~~~~~~ 136 (165)
T cd01864 68 ITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYG--ASNVVLLLIGNKCDLEEQREVLFEE---------ACTLAE 136 (165)
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEECcccccccccCHHH---------HHHHHH
Confidence 33445567899999999974432222 23444444322 2247899999999986543111111 233444
Q ss_pred HcCCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158 175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV 207 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~ 207 (225)
..+.. ...+.|+.++.+++++++.+.+.
T Consensus 137 ~~~~~-----~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 137 KNGML-----AVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred HcCCc-----EEEEEECCCCCCHHHHHHHHHHh
Confidence 33321 12345566778999999888653
No 54
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.77 E-value=3.8e-17 Score=124.96 Aligned_cols=166 Identities=15% Similarity=0.204 Sum_probs=99.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCc-cccccC-------------CCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKR-AFKSKA-------------GSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA 84 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~-~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (225)
..+|+++|.+|+|||||+|+|++.. .+.... ...+.|.......+.+ .+..+.+|||||..++
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~~-- 78 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHADF-- 78 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHHH--
Confidence 3589999999999999999998632 111110 1234455555555666 6789999999997643
Q ss_pred CcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhc
Q 036158 85 DSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE 164 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~ 164 (225)
...+..+...+|++++|+|+.+........++..+.. . ..|+++|+||+|+... .......+
T Consensus 79 ---------~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~---~--~~p~iiv~NK~Dl~~~---~~~~~~~~- 140 (194)
T cd01891 79 ---------GGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE---L--GLKPIVVINKIDRPDA---RPEEVVDE- 140 (194)
T ss_pred ---------HHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH---c--CCCEEEEEECCCCCCC---CHHHHHHH-
Confidence 2233344567899999999975544444444433322 1 3789999999998643 22222222
Q ss_pred CCchHHHHHHH-------cCCcEEEeeCCC----ccccccHHHHHHHHHHHHHHHH
Q 036158 165 CPKPLKEILQL-------CDNRCVLFDNKT----KDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 165 ~~~~~~~~~~~-------~~~~~~~~~~~~----~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
+.+.+.. .+.+++..+... ....+...++++|++.|.+.++
T Consensus 141 ----~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (194)
T cd01891 141 ----VFDLFIELGATEEQLDFPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVP 192 (194)
T ss_pred ----HHHHHHHhCCccccCccCEEEeehhccccccccccchhhHHHHHHHHHhcCC
Confidence 3333321 233333333221 1122334788888888876654
No 55
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.76 E-value=1.6e-16 Score=117.74 Aligned_cols=160 Identities=17% Similarity=0.168 Sum_probs=97.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
++|+++|++|+|||||++++++...... ..+..+.......+.+ ++ ..+.+|||||... +....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~-----------~~~~~ 66 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQ--YKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQER-----------FRSIT 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHH
Confidence 4799999999999999999998764222 1223333333344555 34 3788999999532 12223
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEEG-AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
......+|++++|+|..+..+.+.. .++..+..... ...|++++.||+|.........+. ..+..+.+
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~--~~~pivvv~nK~D~~~~~~~~~~~---------~~~~~~~~ 135 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYAD--PNVVIMLVGNKSDLEDQRQVSREE---------AEAFAEEH 135 (164)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhcccccCCCHHH---------HHHHHHHc
Confidence 3345678999999999743332221 12233333221 247999999999976532112111 23344455
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
+..++. .|+.++.+++++++.|.+.+.+
T Consensus 136 ~~~~~e------~Sa~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 136 GLPFFE------TSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred CCeEEE------EeCCCCCCHHHHHHHHHHHHhh
Confidence 544333 3445568999999999877654
No 56
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.76 E-value=1.1e-16 Score=118.51 Aligned_cols=157 Identities=16% Similarity=0.136 Sum_probs=96.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
.+|+++|++|+|||||+|++++...... ..+..+.+.....+.+ ++ ..+.+|||||... +...+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~-----------~~~~~ 66 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQ--YQATIGIDFLSKTMYL-EDKTVRLQLWDTAGQER-----------FRSLI 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc--CCCceeeeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHHH
Confidence 3799999999999999999998875332 2334444444445555 33 3689999999532 22233
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
......+|++++|+|++++-+..+ ..++..+....+ ...|++++.||+|.........++ ...+....
T Consensus 67 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~D~~~~~~~~~~~---------~~~~~~~~ 135 (161)
T cd01861 67 PSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERG--NDVIIVLVGNKTDLSDKRQVSTEE---------GEKKAKEL 135 (161)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCEEEEEEEChhccccCccCHHH---------HHHHHHHh
Confidence 344567899999999974422222 223333332222 147999999999985432112211 23333444
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV 207 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~ 207 (225)
+..+.. .|+..+.+++++++.+.+.
T Consensus 136 ~~~~~~------~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 136 NAMFIE------TSAKAGHNVKELFRKIASA 160 (161)
T ss_pred CCEEEE------EeCCCCCCHHHHHHHHHHh
Confidence 433332 3455668999999998754
No 57
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.76 E-value=7.8e-17 Score=136.93 Aligned_cols=124 Identities=19% Similarity=0.178 Sum_probs=87.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
.+.++|+++|++|+|||||+|+|++.....+ ...+++|++.....+.+ ++.++.+|||||+.+.....+. .-...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aiv-s~~pgtTrd~~~~~i~~-~g~~v~l~DTaG~~~~~~~ie~---~gi~~ 275 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIV-SDIKGTTRDVVEGDFEL-NGILIKLLDTAGIREHADFVER---LGIEK 275 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcEEEEEEEEEEE-CCEEEEEeeCCCcccchhHHHH---HHHHH
Confidence 4568999999999999999999998764333 23567788877777888 7889999999998754211111 11112
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELE 151 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~ 151 (225)
...+...+|++++|+|+.++.+..+. ++..+.. ...|+++|+||+|+..
T Consensus 276 ~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~-----~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 276 SFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK-----SKKPFILVLNKIDLKI 324 (442)
T ss_pred HHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh-----CCCCEEEEEECccCCC
Confidence 22455678999999999866655443 3333221 2379999999999753
No 58
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.76 E-value=9.4e-17 Score=119.38 Aligned_cols=161 Identities=16% Similarity=0.132 Sum_probs=95.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
++|+++|.+|+|||||+|++.+...... ..+..+.......+.+. ....+.+|||||...+ .....
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~~~~ 67 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSK--YLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY-----------LEVRN 67 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCccceeEEEEEEEECCeEEEEEEEECCccHHH-----------HHHHH
Confidence 4799999999999999999998774322 12222222222333331 2347899999996422 22233
Q ss_pred hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc---cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 99 MTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGK---KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~---~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
.....+|++|+|+|..++.+... ..++..+.+.... ....|+++|.||+|..+......++ .+....
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 138 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDE---------GRLWAE 138 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHH---------HHHHHH
Confidence 45668899999999974422222 2344444443321 1347999999999976322111111 223333
Q ss_pred HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158 175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~ 208 (225)
..+.+++ ..|+.++.+++++++.|.+.+
T Consensus 139 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 139 SKGFKYF------ETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred HcCCeEE------EEECCCCCCHHHHHHHHHHHH
Confidence 4343332 345566789999999987543
No 59
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.76 E-value=1.5e-16 Score=121.03 Aligned_cols=165 Identities=14% Similarity=0.132 Sum_probs=104.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
..++|+++|..|+|||||++++..... .. ...+..+.......+.. ++ ..+.||||||... +..
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~-~~-~~~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~-----------~~~ 70 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGST-ES-PYGYNMGIDYKTTTILL-DGRRVKLQLWDTSGQGR-----------FCT 70 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC-CC-CCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHH
Confidence 458999999999999999999987543 11 11222333333344444 44 4788999999643 223
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
.+..++..+|++|+|+|.+++.+-.. ..+++.+.+.. ...|+++|.||.|+........++ .+++.+
T Consensus 71 l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~---~~~piilVGNK~DL~~~~~v~~~~---------~~~~a~ 138 (189)
T cd04121 71 IFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA---PGVPKILVGNRLHLAFKRQVATEQ---------AQAYAE 138 (189)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccchhccCCCHHH---------HHHHHH
Confidence 33445678999999999985544333 22444444432 247999999999975432111111 344444
Q ss_pred HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCC
Q 036158 175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQ 214 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~ 214 (225)
..+..++ ..||..+.+++++++.+.+.+....+.
T Consensus 139 ~~~~~~~------e~SAk~g~~V~~~F~~l~~~i~~~~~~ 172 (189)
T cd04121 139 RNGMTFF------EVSPLCNFNITESFTELARIVLMRHGR 172 (189)
T ss_pred HcCCEEE------EecCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 4444332 445667799999999999877665444
No 60
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.76 E-value=1.5e-17 Score=141.98 Aligned_cols=158 Identities=23% Similarity=0.307 Sum_probs=105.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHH-HHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKE-IVK 95 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~-~~~ 95 (225)
...++|+++|.+|+|||||+|+|++.....+ ...+++|.+.....+.+ ++.++.+|||||+.++. ..+... +..
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v-~~~~gtT~d~~~~~i~~-~g~~i~l~DT~G~~~~~---~~ie~~gi~~ 287 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIV-TDIAGTTRDVIEEHINL-DGIPLRLIDTAGIRETD---DEVEKIGIER 287 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCccc-CCCCCcccccEEEEEEE-CCeEEEEEeCCCCCCCc---cHHHHHHHHH
Confidence 3458999999999999999999998774333 23566777776667777 78899999999987532 111111 111
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
.......+|++++|+|+.++.+..+...+.. . ...|+++|+||+|+.... ... ..
T Consensus 288 -~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~----~---~~~piiiV~NK~DL~~~~--~~~---------------~~ 342 (449)
T PRK05291 288 -SREAIEEADLVLLVLDASEPLTEEDDEILEE----L---KDKPVIVVLNKADLTGEI--DLE---------------EE 342 (449)
T ss_pred -HHHHHHhCCEEEEEecCCCCCChhHHHHHHh----c---CCCCcEEEEEhhhccccc--hhh---------------hc
Confidence 2234567899999999986665554433322 1 237999999999986432 110 01
Q ss_pred cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
.+.+ ....|+.++.++++|++.|.+.+..
T Consensus 343 ~~~~------~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 343 NGKP------VIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred cCCc------eEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 1111 2234566678888888888887764
No 61
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.76 E-value=1.1e-17 Score=127.66 Aligned_cols=168 Identities=18% Similarity=0.236 Sum_probs=100.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCcc---cc--ccCCCCCceeEEEEEEEEee-------------CCceEEEEeCCCCCC
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRA---FK--SKAGSSGVTKTCEMQRTMLK-------------DGQVVNVIDTPGLFD 81 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~---~~--~~~~~~~~t~~~~~~~~~~~-------------~~~~~~liDtPG~~~ 81 (225)
++|+++|++|+|||||+++|++... +. .....++.|.......+.+. .+..+.+|||||+.+
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 4799999999999999999997311 10 11113355666665555552 156899999999741
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHh
Q 036158 82 SSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL 161 (225)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~ 161 (225)
.... .......+|++++|+|+....+..+.+.+..... . ..|+++++||+|..... ..+...
T Consensus 81 -------~~~~----~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~-~----~~~~iiv~NK~Dl~~~~--~~~~~~ 142 (192)
T cd01889 81 -------LIRT----IIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEI-L----CKKLIVVLNKIDLIPEE--ERERKI 142 (192)
T ss_pred -------HHHH----HHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHH-c----CCCEEEEEECcccCCHH--HHHHHH
Confidence 1222 2233456799999999976555555444443322 1 36999999999987442 222222
Q ss_pred hhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 162 GRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
++ ..+.+...+...+.. .-...+.|+.++.++++|++.+.+.+.
T Consensus 143 ~~-~~~~l~~~~~~~~~~---~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 143 EK-MKKKLQKTLEKTRFK---NSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HH-HHHHHHHHHHhcCcC---CCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 22 111122223222211 012234566778999999999976554
No 62
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.76 E-value=1.9e-17 Score=124.14 Aligned_cols=162 Identities=19% Similarity=0.189 Sum_probs=96.6
Q ss_pred EEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCC
Q 036158 24 LVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKD-GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKD 102 (225)
Q Consensus 24 v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~ 102 (225)
++|++|+|||||+|+|.+... .....+++|..+....+.+ . +..+.+|||||+.+.....+.+...+.. ...
T Consensus 1 iiG~~~~GKStll~~l~~~~~--~~~~~~~~t~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~----~~~ 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP--KVANYPFTTLEPNLGVVEV-PDGARIQVADIPGLIEGASEGRGLGNQFLA----HIR 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc--cccCCCceeecCcceEEEc-CCCCeEEEEeccccchhhhcCCCccHHHHH----HHh
Confidence 579999999999999999875 2223455666666666666 5 8899999999986432222222222222 234
Q ss_pred CccEEEEEEeCCCCC-----C-HHH-HHHHHHHHHHhcc-----cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHH
Q 036158 103 GIHAVLVVFSVRNRF-----S-EEE-GAAIHILESLFGK-----KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 170 (225)
Q Consensus 103 ~~~~ii~v~~~~~~~-----~-~~~-~~~~~~l~~~~~~-----~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~ 170 (225)
.+|++++|+|+.+.. . ..+ ......+...... ....|+++|+||+|+.... ...... ..
T Consensus 74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~-------~~ 144 (176)
T cd01881 74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAE--ELEEEL-------VR 144 (176)
T ss_pred ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchh--HHHHHH-------HH
Confidence 579999999997442 1 222 2233333322111 1248999999999986543 222211 01
Q ss_pred HHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158 171 EILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV 207 (225)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~ 207 (225)
......+.. ....|+..+.+++++++.+..+
T Consensus 145 ~~~~~~~~~------~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 145 ELALEEGAE------VVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred HHhcCCCCC------EEEEehhhhcCHHHHHHHHHhh
Confidence 111111222 2344566778999999988653
No 63
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.76 E-value=3.9e-17 Score=122.33 Aligned_cols=164 Identities=17% Similarity=0.120 Sum_probs=97.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
+|+++|.+|+|||||++++.+.... .. ..+..........+.. ++ ..+.+|||||... +.....
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~-~~-~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~~~ 67 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD-KN-YKATIGVDFEMERFEI-LGVPFSLQLWDTAGQER-----------FKCIAS 67 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CC-CCCceeeEEEEEEEEE-CCEEEEEEEEeCCChHH-----------HHhhHH
Confidence 6899999999999999999987642 21 1222222322233444 33 4799999999642 222333
Q ss_pred hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 99 MTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
..+..+|++++|+|+.++-+. ....+++.++... ....|+++|.||+|+.+.. ....... ..+......
T Consensus 68 ~~~~~ad~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~--~~~~~~~-----~~~~~~~~~ 138 (170)
T cd04108 68 TYYRGAQAIIIVFDLTDVASL--EHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPA--QYALMEQ-----DAIKLAAEM 138 (170)
T ss_pred HHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccc--cccccHH-----HHHHHHHHc
Confidence 456788999999999743221 1222333333221 1125689999999975432 1110001 122333333
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG 213 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~ 213 (225)
+..+. ..|+..+.+++++++.+.++..+-++
T Consensus 139 ~~~~~------e~Sa~~g~~v~~lf~~l~~~~~~~~~ 169 (170)
T cd04108 139 QAEYW------SVSALSGENVREFFFRVAALTFELGC 169 (170)
T ss_pred CCeEE------EEECCCCCCHHHHHHHHHHHHHHccC
Confidence 43332 34666779999999999998877653
No 64
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.76 E-value=3.1e-17 Score=122.60 Aligned_cols=155 Identities=15% Similarity=0.146 Sum_probs=95.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
.+.++|+++|.+|+|||||++++........ . +|.......+.. ....+.+|||||... +...
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~---~--~t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~ 69 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT---I--PTVGFNVETVTY-KNVKFNVWDVGGQDK-----------IRPL 69 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCccc---c--CCcccceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 3468999999999999999999986543211 1 222233334444 667899999999642 2223
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
+..++..+|++|+|+|+.+..+ ..+..+++.+.+... ...|+++|.||+|..... ..++. ++.++
T Consensus 70 ~~~~~~~a~~ii~v~D~t~~~s--~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i---------~~~~~ 136 (168)
T cd04149 70 WRHYYTGTQGLIFVVDSADRDR--IDEARQELHRIINDREMRDALLLVFANKQDLPDAM--KPHEI---------QEKLG 136 (168)
T ss_pred HHHHhccCCEEEEEEeCCchhh--HHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC--CHHHH---------HHHcC
Confidence 3445678899999999974322 222334444443321 237999999999975431 22221 11111
Q ss_pred H---cCCcEEEeeCCCccccccHHHHHHHHHHHH
Q 036158 175 L---CDNRCVLFDNKTKDTAKRTEQVGKLLSLVN 205 (225)
Q Consensus 175 ~---~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~ 205 (225)
. -+..++.+ +.||+++.++++++++|.
T Consensus 137 ~~~~~~~~~~~~----~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 137 LTRIRDRNWYVQ----PSCATSGDGLYEGLTWLS 166 (168)
T ss_pred CCccCCCcEEEE----EeeCCCCCChHHHHHHHh
Confidence 0 11122222 457788899999999885
No 65
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.76 E-value=2.6e-17 Score=123.13 Aligned_cols=160 Identities=15% Similarity=0.120 Sum_probs=97.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT 100 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (225)
+|+++|.+|+|||||++++.+.... ...+|.......+.. .+..+.+|||||.... ...+..+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-----~~~~T~~~~~~~~~~-~~~~i~l~Dt~G~~~~-----------~~~~~~~ 63 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-----QPIPTIGFNVETVEY-KNLKFTIWDVGGKHKL-----------RPLWKHY 63 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-----CcCCcCceeEEEEEE-CCEEEEEEECCCChhc-----------chHHHHH
Confidence 5899999999999999999986421 123344444445555 6778999999997533 1222334
Q ss_pred CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH-cC
Q 036158 101 KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL-CD 177 (225)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 177 (225)
...+|++++|+|.+++.+- .+...++.+.+... ...|+++|.||.|+.... ..++..+. + .+... ++
T Consensus 64 ~~~ad~ii~V~D~s~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~-----~-~~~~~~~~ 133 (169)
T cd04158 64 YLNTQAVVFVVDSSHRDRV--SEAHSELAKLLTEKELRDALLLIFANKQDVAGAL--SVEEMTEL-----L-SLHKLCCG 133 (169)
T ss_pred hccCCEEEEEEeCCcHHHH--HHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCC--CHHHHHHH-----h-CCccccCC
Confidence 5678999999999743211 12333444443221 236999999999975332 22222111 0 01111 11
Q ss_pred CcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
..+..+ ..||+++.++++++++|.+.+.++
T Consensus 134 ~~~~~~----~~Sa~~g~gv~~~f~~l~~~~~~~ 163 (169)
T cd04158 134 RSWYIQ----GCDARSGMGLYEGLDWLSRQLVAA 163 (169)
T ss_pred CcEEEE----eCcCCCCCCHHHHHHHHHHHHhhc
Confidence 122222 457788899999999998766554
No 66
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.76 E-value=1.5e-17 Score=127.99 Aligned_cols=166 Identities=14% Similarity=0.130 Sum_probs=101.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCc-cccccCCCCCceeEEEEEEEEee--------------------------------
Q 036158 20 RNLVLVGRTGNGKSATANSILGKR-AFKSKAGSSGVTKTCEMQRTMLK-------------------------------- 66 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~-~~~~~~~~~~~t~~~~~~~~~~~-------------------------------- 66 (225)
.+|+++|+.|+|||||+.+|.+.. .........+.|..+....+.+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 479999999999999999998763 22222223344444444443331
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-CCHHHHHHHHHHHHHhcccccccEEEEEe
Q 036158 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNR-FSEEEGAAIHILESLFGKKISDYMIVVFT 145 (225)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~vv~~ 145 (225)
....+.||||||.. .+...+......+|++++|+|+.++ ......+.+..+.. .+ .+|+++|+|
T Consensus 81 ~~~~i~~iDtPG~~-----------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~---~~~iiivvN 145 (203)
T cd01888 81 LVRHVSFVDCPGHE-----------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MG---LKHIIIVQN 145 (203)
T ss_pred cccEEEEEECCChH-----------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cC---CCcEEEEEE
Confidence 12689999999953 2333333445578999999999753 33344445544433 11 257899999
Q ss_pred cCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 146 GGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 146 k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
|+|+.... ......++ +++.+...... .....+.|+.++.++++|++.|.+.+++
T Consensus 146 K~Dl~~~~--~~~~~~~~-----i~~~~~~~~~~---~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 146 KIDLVKEE--QALENYEQ-----IKKFVKGTIAE---NAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred chhccCHH--HHHHHHHH-----HHHHHhccccC---CCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 99986432 33333333 34444322111 0112345667789999999999876654
No 67
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.76 E-value=1.5e-16 Score=118.39 Aligned_cols=159 Identities=13% Similarity=0.097 Sum_probs=96.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
++|+++|.+|+|||||+|++.+...... ..+..+.......+.. ++ ..+.+|||||... +....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~g~~~-----------~~~~~ 67 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSA--FVSTVGIDFKVKTVFR-NDKRVKLQIWDTAGQER-----------YRTIT 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHH
Confidence 6899999999999999999998764222 1122222222223333 33 4789999999542 22233
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc-ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK-ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
......+|++++|+|..++-+ ...+.+++.++.... ...|+++|.||+|+.+......++ ..++.+..
T Consensus 68 ~~~~~~~~~~l~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 136 (165)
T cd01865 68 TAYYRGAMGFILMYDITNEES--FNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSER---------GRQLADQL 136 (165)
T ss_pred HHHccCCcEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHH---------HHHHHHHc
Confidence 455678999999999874322 222333444432211 247899999999986543111111 23334443
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
+..++ ..|+.++.++++|++.+.+.+.
T Consensus 137 ~~~~~------~~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 137 GFEFF------EASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred CCEEE------EEECCCCCCHHHHHHHHHHHHH
Confidence 43322 3456677899999999977654
No 68
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.76 E-value=1.5e-16 Score=121.95 Aligned_cols=174 Identities=13% Similarity=0.068 Sum_probs=102.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
.+|+|+|.+|+|||||++++++...... ..+..+.......+.+ ++ ..+.+|||||......... .++....
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~--~~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~~~---~e~~~~~ 74 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEE--YIPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGTAG---QEWMDPR 74 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcc--cCCccccccceeEEEE-CCEEEEEEEEeCCCcccCCccch---hHHHHHH
Confidence 4799999999999999999998664221 1222222332233444 45 3688999999875432211 1122222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc-ccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH-
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFG-KKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ- 174 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~- 174 (225)
......+|++|+|+|+.++.+-+. ..+++.+.+... .....|+++|.||+|........ .+ ..+++..
T Consensus 75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~-~~--------~~~~~~~~ 145 (198)
T cd04142 75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAP-RH--------VLSVLVRK 145 (198)
T ss_pred HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccccccc-HH--------HHHHHHHH
Confidence 234568899999999974433222 223334443321 12347999999999986532111 11 0222221
Q ss_pred HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCC
Q 036158 175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQ 214 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~ 214 (225)
..+..+ ...|+.++.++++|++.+.+..-.+++.
T Consensus 146 ~~~~~~------~e~Sak~g~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 146 SWKCGY------LECSAKYNWHILLLFKELLISATTRGRS 179 (198)
T ss_pred hcCCcE------EEecCCCCCCHHHHHHHHHHHhhccCCC
Confidence 112221 2456667799999999998877777655
No 69
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.76 E-value=1.3e-16 Score=119.02 Aligned_cols=160 Identities=18% Similarity=0.106 Sum_probs=96.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
.++|+++|.+|+|||||++++.+...... ..+..+.......+.+ ++ ..+.+|||||.... ...
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~g~~~~-----------~~~ 68 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPS--FISTIGIDFKIRTIEL-DGKKIKLQIWDTAGQERF-----------RTI 68 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcc--cccCccceEEEEEEEE-CCEEEEEEEEeCCchHHH-----------HHH
Confidence 47999999999999999999998764222 1222222233333444 33 37899999995422 222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
.......+|++++|+|++++.+-.+ ..++..+.... ....|+++|.||+|+........++ ..+..+.
T Consensus 69 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~---------~~~~~~~ 137 (167)
T cd01867 69 TTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHA--SEDVERMLVGNKCDMEEKRVVSKEE---------GEALADE 137 (167)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEECcccccccCCCHHH---------HHHHHHH
Confidence 2344567899999999974432222 12233333321 1247999999999987542112111 2334444
Q ss_pred cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
.+..+ ...|+.++.+++++++.+.+.+.
T Consensus 138 ~~~~~------~~~Sa~~~~~v~~~~~~i~~~~~ 165 (167)
T cd01867 138 YGIKF------LETSAKANINVEEAFFTLAKDIK 165 (167)
T ss_pred cCCEE------EEEeCCCCCCHHHHHHHHHHHHH
Confidence 44433 24455666899999999887664
No 70
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.76 E-value=5.6e-17 Score=120.35 Aligned_cols=157 Identities=17% Similarity=0.075 Sum_probs=94.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
++|+++|.+|+|||||++++++....... .+............+. ....+.+|||||...+ ...+.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~~~ 67 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQ--LSTYALTLYKHNAKFEGKTILVDFWDTAGQERF-----------QTMHA 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCc--CCceeeEEEEEEEEECCEEEEEEEEeCCCchhh-----------hhhhH
Confidence 47999999999999999999876532211 1111111222223331 2236889999996532 23334
Q ss_pred hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158 99 MTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
.++..+|++|+|+|.+++.+..+ ..++..+++.. ...|+++|.||+|+... ..+ + ..++.+..+
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~p~ivv~nK~Dl~~~---~~~----~-----~~~~~~~~~ 132 (161)
T cd04124 68 SYYHKAHACILVFDVTRKITYKNLSKWYEELREYR---PEIPCIVVANKIDLDPS---VTQ----K-----KFNFAEKHN 132 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEECccCchh---HHH----H-----HHHHHHHcC
Confidence 45678899999999975433222 23444444422 23799999999997321 111 1 122222223
Q ss_pred CcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
.+++ ..|+.++.+++++++.+.+.+.+
T Consensus 133 ~~~~------~~Sa~~~~gv~~l~~~l~~~~~~ 159 (161)
T cd04124 133 LPLY------YVSAADGTNVVKLFQDAIKLAVS 159 (161)
T ss_pred CeEE------EEeCCCCCCHHHHHHHHHHHHHh
Confidence 2222 34666779999999999876654
No 71
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.76 E-value=1.7e-16 Score=117.80 Aligned_cols=163 Identities=19% Similarity=0.292 Sum_probs=99.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCc---HHHHHHHHHHHh
Q 036158 22 LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS---EFVSKEIVKCIG 98 (225)
Q Consensus 22 i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~---~~~~~~~~~~~~ 98 (225)
|+++|.+|+|||||+|+|++...........+.|..... ... ...+.++||||+.....+. ++....+..++
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~- 76 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNV--NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYL- 76 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEc--cCeEEEecCCCccccccCHHHHHHHHHHHHHHH-
Confidence 899999999999999999954433333333444444333 222 3389999999998654321 11222222222
Q ss_pred hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH-HcC
Q 036158 99 MTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ-LCD 177 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 177 (225)
.....++.+++++|.+...+....++++++... ..|+++++||+|..... ........ ....++ ...
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-----~~~vi~v~nK~D~~~~~--~~~~~~~~-----~~~~l~~~~~ 144 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-----GIPFLVVLTKADKLKKS--ELAKALKE-----IKKELKLFEI 144 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-----CCCEEEEEEchhcCChH--HHHHHHHH-----HHHHHHhccC
Confidence 233567899999998755556666667776653 26899999999986543 33333222 333333 122
Q ss_pred -CcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158 178 -NRCVLFDNKTKDTAKRTEQVGKLLSLVNSV 207 (225)
Q Consensus 178 -~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~ 207 (225)
.+++ +.|+..+.++.++++.|.++
T Consensus 145 ~~~~~------~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 145 DPPII------LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred CCceE------EEecCCCCCHHHHHHHHHHh
Confidence 2333 33445557889999988764
No 72
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.76 E-value=1.5e-16 Score=123.58 Aligned_cols=164 Identities=16% Similarity=0.127 Sum_probs=100.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKD--GQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
++|+++|.+|+|||||+|++.+.... . ...+..+.+.....+.+++ ...+.||||||...+ ...+
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~-~-~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~-----------~~l~ 67 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFG-K-SYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIG-----------GKML 67 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCC-C-CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHH-----------HHHH
Confidence 47999999999999999999976532 1 1122333333334455533 347899999995321 2223
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGK-KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
..++..+|++|+|+|++++-+... ..++..+.+.... ....|+++|.||+|+........+ ...++...
T Consensus 68 ~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~---------~~~~~~~~ 138 (215)
T cd04109 68 DKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDD---------KHARFAQA 138 (215)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHH---------HHHHHHHH
Confidence 334668899999999975433222 2244455554332 123578999999998643211111 13344444
Q ss_pred cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
.+..++ ..||.++.+++++++.+.+.+...
T Consensus 139 ~~~~~~------~iSAktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 139 NGMESC------LVSAKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred cCCEEE------EEECCCCCCHHHHHHHHHHHHHhc
Confidence 443332 346677899999999998877654
No 73
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.76 E-value=1.7e-16 Score=118.56 Aligned_cols=161 Identities=14% Similarity=0.095 Sum_probs=95.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKD-GQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
.++|+++|.+|+|||||+|++++........ +..+.+.....+.... ...+.+|||||.. .+....
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-----------~~~~~~ 70 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMITIDGKQIKLQIWDTAGQE-----------SFRSIT 70 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CccceeEEEEEEEECCEEEEEEEEECCCcH-----------HHHHHH
Confidence 4799999999999999999999876432222 1222222223333312 2378999999943 222333
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc-cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK-KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
......+|++++|+|+.++.+- .....++.+.... ....|+++|.||+|.........++ .+.+....
T Consensus 71 ~~~~~~~d~il~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 139 (168)
T cd01866 71 RSYYRGAAGALLVYDITRRETF--NHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEE---------GEAFAKEH 139 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHH---------HHHHHHHc
Confidence 3455688999999998743222 2233333332211 1247899999999976432112221 23334444
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
+..+ ...|+..+.++++++..+.+.+.
T Consensus 140 ~~~~------~e~Sa~~~~~i~~~~~~~~~~~~ 166 (168)
T cd01866 140 GLIF------METSAKTASNVEEAFINTAKEIY 166 (168)
T ss_pred CCEE------EEEeCCCCCCHHHHHHHHHHHHH
Confidence 4333 23455566899999988876654
No 74
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.75 E-value=1.5e-16 Score=118.48 Aligned_cols=159 Identities=17% Similarity=0.163 Sum_probs=95.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
++|+++|.+|+|||||++++.+...... ..+..+.......+.. ++ ..+.+|||||.... ....
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~-----------~~~~ 68 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTES--YISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERF-----------RTIT 68 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEEE-CCEEEEEEEEECCCcHhH-----------HHHH
Confidence 6899999999999999999997664221 1222233333334444 33 36899999995422 2222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
......+|++|+|+|+.++-+... ..+++.+.... ....|+++|.||+|.........++ .....+..
T Consensus 69 ~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~--~~~~~~iiv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 137 (166)
T cd01869 69 SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYA--SENVNKLLVGNKCDLTDKRVVDYSE---------AQEFADEL 137 (166)
T ss_pred HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEEChhcccccCCCHHH---------HHHHHHHc
Confidence 334567899999999974322111 12333333322 1237999999999976543111111 23333444
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
+.+++ +.|+.++.+++++++.|.+.+.
T Consensus 138 ~~~~~------~~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 138 GIPFL------ETSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred CCeEE------EEECCCCcCHHHHHHHHHHHHH
Confidence 44333 3455566899999999987654
No 75
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.75 E-value=6.4e-17 Score=121.72 Aligned_cols=161 Identities=14% Similarity=0.107 Sum_probs=97.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
.+.++|+++|..|+|||||++++....... ..+|.......... .+..+.+|||||... +...
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~-----~~~t~~~~~~~~~~-~~~~l~l~D~~G~~~-----------~~~~ 73 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVT-----TIPTIGFNVETVTY-KNISFTVWDVGGQDK-----------IRPL 73 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCC-----cCCccccceEEEEE-CCEEEEEEECCCChh-----------hHHH
Confidence 446899999999999999999996444211 12233343444555 677899999999643 2233
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
+..++..+|++|+|+|+.++.+ ..+..+++.+.+... ...|+++|.||.|+.... ..++.... + . +.
T Consensus 74 ~~~~~~~ad~ii~v~D~t~~~s--~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~-----~-~-~~ 142 (175)
T smart00177 74 WRHYYTNTQGLIFVVDSNDRDR--IDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEK-----L-G-LH 142 (175)
T ss_pred HHHHhCCCCEEEEEEECCCHHH--HHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHH-----h-C-cc
Confidence 3445678899999999974321 122333444433221 236999999999975432 22222111 0 0 00
Q ss_pred HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158 175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~ 208 (225)
....+... ..+.||.++.++++++++|.+.+
T Consensus 143 ~~~~~~~~---~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 143 SIRDRNWY---IQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred ccCCCcEE---EEEeeCCCCCCHHHHHHHHHHHh
Confidence 11111111 12356778899999999997654
No 76
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.75 E-value=7.2e-17 Score=120.19 Aligned_cols=160 Identities=16% Similarity=0.128 Sum_probs=95.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (225)
.+|+++|.+|+|||||++++++...... ..+.............. ....+.+|||||...+. .....
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~-~~~t~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~~-----------~~~~~ 68 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRES-YIPTIEDTYRQVISCSK-NICTLQITDTTGSHQFP-----------AMQRL 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCC-cCCcchheEEEEEEECC-EEEEEEEEECCCCCcch-----------HHHHH
Confidence 6899999999999999999997764222 11111111111112222 23468899999976442 11123
Q ss_pred cCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhccc-ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158 100 TKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKK-ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
+...+|++++|+|.+++.+... ..+++.+.+..+.. ...|+++|.||+|+.+..+...++ ........+
T Consensus 69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~---------~~~~~~~~~ 139 (165)
T cd04140 69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNE---------GAACATEWN 139 (165)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHH---------HHHHHHHhC
Confidence 4457799999999975443332 34555566554322 347999999999986533111111 122222223
Q ss_pred CcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158 178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSV 207 (225)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~ 207 (225)
..+ ...||.++.+++++++.|.++
T Consensus 140 ~~~------~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 140 CAF------METSAKTNHNVQELFQELLNL 163 (165)
T ss_pred CcE------EEeecCCCCCHHHHHHHHHhc
Confidence 222 345667779999999998765
No 77
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.75 E-value=2e-17 Score=132.62 Aligned_cols=154 Identities=23% Similarity=0.313 Sum_probs=95.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCC------CCCceeEEEEEEEEee-CC--ceEEEEeCCCCCCCCCCcHHH
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAG------SSGVTKTCEMQRTMLK-DG--QVVNVIDTPGLFDSSADSEFV 89 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~-~~--~~~~liDtPG~~~~~~~~~~~ 89 (225)
.++|+|+|.+|+|||||||+|++......... ....+.........+. ++ .+++|+||||+++.. ++...
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i-~n~~~ 82 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNI-DNSDC 82 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSS-THCHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccc-cchhh
Confidence 47999999999999999999999876544210 1112333333333332 22 289999999999764 33334
Q ss_pred HHHHHHHHh-----------------hcCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158 90 SKEIVKCIG-----------------MTKDGIHAVLVVFSVR-NRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELE 151 (225)
Q Consensus 90 ~~~~~~~~~-----------------~~~~~~~~ii~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~ 151 (225)
+..+..++. ....++|++||+++.. +++.+.|.+.|+.|.+. .+++.|+.|+|.+.
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~------vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR------VNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT------SEEEEEESTGGGS-
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc------ccEEeEEecccccC
Confidence 444444442 1235789999999874 57899999999888775 79999999999886
Q ss_pred CCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158 152 DNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK 186 (225)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (225)
.. .+..+.+. +.+.++..+.+++.|...
T Consensus 157 ~~--el~~~k~~-----i~~~l~~~~I~~f~f~~~ 184 (281)
T PF00735_consen 157 PE--ELQAFKQR-----IREDLEENNIKIFDFPED 184 (281)
T ss_dssp HH--HHHHHHHH-----HHHHHHHTT--S------
T ss_pred HH--HHHHHHHH-----HHHHHHHcCceeeccccc
Confidence 53 67776666 888888889887776544
No 78
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.75 E-value=2.3e-16 Score=118.37 Aligned_cols=164 Identities=15% Similarity=0.152 Sum_probs=100.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
.++|+++|..|+|||||++++.+...... ...+........+.+ ++ ..+.||||||...+ ...
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~---~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~l 66 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDY---HDPTIEDAYKQQARI-DNEPALLDILDTAGQAEF-----------TAM 66 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCC---cCCcccceEEEEEEE-CCEEEEEEEEeCCCchhh-----------HHH
Confidence 36899999999999999999987654211 111111222223444 44 36889999996532 223
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGA-AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
...++..+|++|+|+|.+++.+-.... +++.+.+.. .....|+++|.||+|......-..++ ..++.+.
T Consensus 67 ~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~-~~~~~piilvgNK~Dl~~~~~v~~~~---------~~~~a~~ 136 (172)
T cd04141 67 RDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVR-LTEDIPLVLVGNKVDLESQRQVTTEE---------GRNLARE 136 (172)
T ss_pred hHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhhhhcCccCHHH---------HHHHHHH
Confidence 334566789999999998665544432 334444432 22347999999999975432111111 2233333
Q ss_pred cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158 176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG 213 (225)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~ 213 (225)
.+.+++ .+||..+.+++++++.+.+.+.+...
T Consensus 137 ~~~~~~------e~Sa~~~~~v~~~f~~l~~~~~~~~~ 168 (172)
T cd04141 137 FNCPFF------ETSAALRHYIDDAFHGLVREIRRKES 168 (172)
T ss_pred hCCEEE------EEecCCCCCHHHHHHHHHHHHHHhcc
Confidence 343322 44556678999999999877665443
No 79
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.75 E-value=2.4e-16 Score=117.44 Aligned_cols=158 Identities=16% Similarity=0.149 Sum_probs=93.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
++|+++|.+|+|||||++++.+...... ..+..........+.. ++ ..+.+|||||... +....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~~ 68 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMAD--CPHTIGVEFGTRIIEV-NGQKIKLQIWDTAGQER-----------FRAVT 68 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC--CCcccceeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHHH
Confidence 6899999999999999999997753221 1111112222223344 33 3689999999532 22333
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc-cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK-KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
...+..+|++|+|+|+.++.+-. .+..++...... ....|+++|.||+|+........++ ..++....
T Consensus 69 ~~~~~~~~~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 137 (166)
T cd04122 69 RSYYRGAAGALMVYDITRRSTYN--HLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEE---------AKQFADEN 137 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHH---------HHHHHHHc
Confidence 44567889999999997442222 222333332111 1236899999999976543111111 23344443
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~ 208 (225)
+..++ ..|+.++.++++++..+.+.+
T Consensus 138 ~~~~~------e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 138 GLLFL------ECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred CCEEE------EEECCCCCCHHHHHHHHHHHH
Confidence 43322 345566789999988776554
No 80
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.75 E-value=8.6e-17 Score=120.70 Aligned_cols=158 Identities=15% Similarity=0.161 Sum_probs=97.0
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158 14 SPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI 93 (225)
Q Consensus 14 ~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (225)
.+....++|+++|++|+|||||+++|.+..... ...|.......+.+ ++..+.+|||||... +
T Consensus 9 ~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~-----~~~t~g~~~~~~~~-~~~~l~l~D~~G~~~-----------~ 71 (173)
T cd04154 9 KLKEREMRILILGLDNAGKTTILKKLLGEDIDT-----ISPTLGFQIKTLEY-EGYKLNIWDVGGQKT-----------L 71 (173)
T ss_pred hcCCCccEEEEECCCCCCHHHHHHHHccCCCCC-----cCCccccceEEEEE-CCEEEEEEECCCCHH-----------H
Confidence 344566899999999999999999999874321 12232333444555 577899999999642 2
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 171 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (225)
...+..+...+|++++|+|+.++.+.. ....++...+.. ....|+++|.||+|..+.. ..++ +.+
T Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~---------~~~ 138 (173)
T cd04154 72 RPYWRNYFESTDALIWVVDSSDRLRLD--DCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEE---------IRE 138 (173)
T ss_pred HHHHHHHhCCCCEEEEEEECCCHHHHH--HHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHH---------HHH
Confidence 223334566889999999997442211 122233333221 1347999999999976542 2222 122
Q ss_pred HHHHc--C-CcEEEeeCCCccccccHHHHHHHHHHHH
Q 036158 172 ILQLC--D-NRCVLFDNKTKDTAKRTEQVGKLLSLVN 205 (225)
Q Consensus 172 ~~~~~--~-~~~~~~~~~~~~~~~~~~~v~~l~~~i~ 205 (225)
.+... . ..+. ....||.++.+++++++++.
T Consensus 139 ~~~~~~~~~~~~~----~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 139 ALELDKISSHHWR----IQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred HhCccccCCCceE----EEeccCCCCcCHHHHHHHHh
Confidence 22111 1 1122 23456778899999998874
No 81
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.75 E-value=4.5e-17 Score=123.40 Aligned_cols=164 Identities=13% Similarity=0.093 Sum_probs=95.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK--DGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
.++|+++|.+|+|||||++++.+...... .+..+.......+... .+..+.+|||||... +...
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-----------~~~~ 68 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT---VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEK-----------LRPL 68 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc---CCccccceeEEEeeccCCCceEEEEEECCCcHh-----------HHHH
Confidence 47899999999999999999987653211 1111122222222221 345899999999532 2233
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH-
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ- 174 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~- 174 (225)
+..+...+|++++|+|+.+.-+... ...+..+..... ....|+++|+||+|..... ..++. ...+.
T Consensus 69 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~~~--~~~~~---------~~~~~~ 136 (183)
T cd04152 69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPNAL--SVSEV---------EKLLAL 136 (183)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCccccC--CHHHH---------HHHhCc
Confidence 3445668899999999874321111 122222333221 1347999999999975432 22221 11111
Q ss_pred --HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 175 --LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 175 --~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
......+. ..+.||.++.++++++..|.+.+.+.
T Consensus 137 ~~~~~~~~~~---~~~~SA~~~~gi~~l~~~l~~~l~~~ 172 (183)
T cd04152 137 HELSASTPWH---VQPACAIIGEGLQEGLEKLYEMILKR 172 (183)
T ss_pred cccCCCCceE---EEEeecccCCCHHHHHHHHHHHHHHH
Confidence 11111111 12457778899999999998777543
No 82
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.75 E-value=1.8e-16 Score=117.44 Aligned_cols=157 Identities=15% Similarity=0.133 Sum_probs=93.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKD-GQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
++|+++|++|+|||||+++|++....... .+..+.......+...+ ...+.+|||||.... .....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-----------~~~~~ 67 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDS--QHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERF-----------RSVTR 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCceeeeEEEEEEEECCEEEEEEEEECcchHHH-----------HHhHH
Confidence 47999999999999999999987643221 22222222223333312 247889999996422 22223
Q ss_pred hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158 99 MTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
.....+|++++|+|.+++.+... ..++..++.... ...|++++.||+|.........++ ...+....+
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~---------~~~~~~~~~ 136 (161)
T cd04113 68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALAS--PNIVVILVGNKSDLADQREVTFLE---------ASRFAQENG 136 (161)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhcchhccCCHHH---------HHHHHHHcC
Confidence 34567899999999975433222 223333433322 247899999999976532111111 233444444
Q ss_pred CcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158 178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNS 206 (225)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~ 206 (225)
..+. ..|+.++.+++++++.+.+
T Consensus 137 ~~~~------~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 137 LLFL------ETSALTGENVEEAFLKCAR 159 (161)
T ss_pred CEEE------EEECCCCCCHHHHHHHHHH
Confidence 3333 2344566899999988854
No 83
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.75 E-value=3.9e-16 Score=117.74 Aligned_cols=164 Identities=12% Similarity=0.061 Sum_probs=97.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-----------CCceEEEEeCCCCCCCCCCc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-----------DGQVVNVIDTPGLFDSSADS 86 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------~~~~~~liDtPG~~~~~~~~ 86 (225)
..++|+++|.+|+|||||++++.+...... ..+..+.+.....+.+. ....+.||||||..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~------ 74 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPK--FITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE------ 74 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCcc--CCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH------
Confidence 348999999999999999999987654221 11111112222222221 13578999999943
Q ss_pred HHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcC
Q 036158 87 EFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGREC 165 (225)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~ 165 (225)
.+..........+|++++|+|+.+.-+... ..++..+.... .....|+++|.||+|+.+......+
T Consensus 75 -----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piiiv~nK~Dl~~~~~v~~~------- 141 (180)
T cd04127 75 -----RFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHA-YCENPDIVLCGNKADLEDQRQVSEE------- 141 (180)
T ss_pred -----HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCcEEEEEeCccchhcCccCHH-------
Confidence 233444456678899999999974322222 12333333221 1124689999999997654211111
Q ss_pred CchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 166 PKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
...++.+..+.++ ...|+.++.+++++++.+.+.+.+
T Consensus 142 --~~~~~~~~~~~~~------~e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 142 --QAKALADKYGIPY------FETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred --HHHHHHHHcCCeE------EEEeCCCCCCHHHHHHHHHHHHHh
Confidence 1333444444332 345666778999999999876543
No 84
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.75 E-value=2.5e-16 Score=117.08 Aligned_cols=158 Identities=15% Similarity=0.123 Sum_probs=95.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
.++|+++|.+|+|||||+|++.+...... ..+..+.......+.. ++ ..+.+|||||... +...
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~ 68 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLD--SKSTIGVEFATRSIQI-DGKTIKAQIWDTAGQER-----------YRAI 68 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceEEEEEEEEE-CCEEEEEEEEeCCChHH-----------HHHH
Confidence 36899999999999999999998764322 1233333333334444 34 3689999999532 2222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
.......++++|+|+|..+..+..+ .+++..+.+... ...|+++|.||+|.........++ ...+...
T Consensus 69 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pi~vv~nK~Dl~~~~~~~~~~---------~~~~~~~ 137 (165)
T cd01868 69 TSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRAVPTEE---------AKAFAEK 137 (165)
T ss_pred HHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccccCCHHH---------HHHHHHH
Confidence 3345567899999999974333222 123333333221 137999999999976432111111 2333333
Q ss_pred cCCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158 176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV 207 (225)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~ 207 (225)
.+..++ ..|+.++.+++++++.+.+.
T Consensus 138 ~~~~~~------~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 138 NGLSFI------ETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred cCCEEE------EEECCCCCCHHHHHHHHHHH
Confidence 333332 34556678999999988654
No 85
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.74 E-value=2.9e-16 Score=116.46 Aligned_cols=159 Identities=23% Similarity=0.183 Sum_probs=94.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
.++|+++|.+|+|||||++++++...... ..+++.........+ ++ ..+.+|||||..+.. ..
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~ 66 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTD---YDPTIEDSYTKQCEI-DGQWAILDILDTAGQEEFS-----------AM 66 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcc---cCCCccceEEEEEEE-CCEEEEEEEEECCCCcchh-----------HH
Confidence 47999999999999999999997664211 122222222223344 34 368899999976431 12
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
+......+|++++|+++++.-+... ..++..+..... ....|++++.||+|.........++ ..+..+.
T Consensus 67 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~---------~~~~~~~ 136 (164)
T cd04145 67 REQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKD-RDEFPMILVGNKADLEHQRKVSREE---------GQELARK 136 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeCccccccceecHHH---------HHHHHHH
Confidence 2234456799999999974322222 223333333221 2247999999999976432111111 2333333
Q ss_pred cCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158 176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~ 208 (225)
.+..+ ...|+.++.+++++++.+.+.+
T Consensus 137 ~~~~~------~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 137 LKIPY------IETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred cCCcE------EEeeCCCCCCHHHHHHHHHHhh
Confidence 33332 3445667799999999987654
No 86
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.74 E-value=2.1e-16 Score=120.54 Aligned_cols=164 Identities=14% Similarity=0.120 Sum_probs=99.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
++|+++|.+|+|||||++++.+...... ...+..........+.+ ++ ..+.||||||.. .+....
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~-----------~~~~~~ 67 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNG-NFIATVGIDFRNKVVTV-DGVKVKLQIWDTAGQE-----------RFRSVT 67 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcc-CcCCcccceeEEEEEEE-CCEEEEEEEEeCCCcH-----------HHHHhh
Confidence 4799999999999999999987764221 11122221222222333 33 378899999943 122223
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
......+|++|+|+|+..+.+... ..++..+.+.... ..|+++|.||+|+........+ ..+.+....
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~~~~~~~~~---------~~~~l~~~~ 136 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQE--DVVIMLLGNKADMSGERVVKRE---------DGERLAKEY 136 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEcccchhccccCHH---------HHHHHHHHc
Confidence 345667899999999974422221 2344444444322 3799999999997643211111 134444444
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG 213 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~ 213 (225)
+..++ ..|+..+.+++++++.|.+.+.+...
T Consensus 137 ~~~~~------e~Sa~~~~~v~~l~~~l~~~~~~~~~ 167 (191)
T cd04112 137 GVPFM------ETSAKTGLNVELAFTAVAKELKHRKY 167 (191)
T ss_pred CCeEE------EEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 54433 33556678999999999988877643
No 87
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.74 E-value=7e-17 Score=119.57 Aligned_cols=155 Identities=14% Similarity=0.065 Sum_probs=91.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT 100 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (225)
+|+++|.+|+|||||++++.+....... ...|.......+.. .+..+.+|||||.... ...+..+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~---~~~t~g~~~~~~~~-~~~~~~l~Dt~G~~~~-----------~~~~~~~ 65 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQI---IVPTVGFNVESFEK-GNLSFTAFDMSGQGKY-----------RGLWEHY 65 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcce---ecCccccceEEEEE-CCEEEEEEECCCCHhh-----------HHHHHHH
Confidence 5899999999999999999986532211 11222222333444 6778999999996532 2233345
Q ss_pred CCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc-ccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc--
Q 036158 101 KDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFG-KKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC-- 176 (225)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 176 (225)
+..+|++|+|+|+.++.+... ...++.+..... .....|+++|+||+|..... ..++.. ..+...
T Consensus 66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~---------~~l~~~~~ 134 (162)
T cd04157 66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKIT---------QLLGLENI 134 (162)
T ss_pred HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHH---------HHhCCccc
Confidence 668899999999974432211 122332222110 11247999999999976432 222211 111110
Q ss_pred C-CcEEEeeCCCccccccHHHHHHHHHHHH
Q 036158 177 D-NRCVLFDNKTKDTAKRTEQVGKLLSLVN 205 (225)
Q Consensus 177 ~-~~~~~~~~~~~~~~~~~~~v~~l~~~i~ 205 (225)
. .++. ....|+.++.++++++++|.
T Consensus 135 ~~~~~~----~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 135 KDKPWH----IFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred cCceEE----EEEeeCCCCCchHHHHHHHh
Confidence 1 1111 23456778899999999885
No 88
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.74 E-value=2.8e-16 Score=116.48 Aligned_cols=160 Identities=19% Similarity=0.158 Sum_probs=94.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
.++|+++|++|+|||||+|++++...........+ .......+.+. ....+.+|||||... +....
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~v~~~~~~~~~~i~D~~G~~~-----------~~~~~ 67 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIG--AAFLTQTVNLDDTTVKFEIWDTAGQER-----------YRSLA 67 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc--eeEEEEEEEECCEEEEEEEEeCCchHH-----------HHHHH
Confidence 36899999999999999999998875332111111 11112233331 224788999999532 22222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
......+|++++|+|..+.-+-. ...++..+..... ...|++++.||+|.........++ ..++....
T Consensus 68 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~---------~~~~~~~~ 136 (163)
T cd01860 68 PMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS--PNIIIALVGNKADLESKRQVSTEE---------AQEYADEN 136 (163)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccCcCCHHH---------HHHHHHHc
Confidence 33456789999999987332211 1233444444321 237899999999976432111111 23344444
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~ 208 (225)
+..+ .+.|+.++.+++++++.+.+.+
T Consensus 137 ~~~~------~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 137 GLLF------FETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred CCEE------EEEECCCCCCHHHHHHHHHHHh
Confidence 4333 3345556789999999987653
No 89
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.74 E-value=2.4e-17 Score=124.21 Aligned_cols=158 Identities=20% Similarity=0.181 Sum_probs=94.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCcccccc-------------CCCCCceeEEEEEEEEe----eCCceEEEEeCCCCCCCC
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKSK-------------AGSSGVTKTCEMQRTML----KDGQVVNVIDTPGLFDSS 83 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~-------------~~~~~~t~~~~~~~~~~----~~~~~~~liDtPG~~~~~ 83 (225)
+|+++|.+|+|||||+++|++....... ....+.|.........+ ..+..+.||||||+.++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 6999999999999999999874321000 00112333333223322 134578899999986431
Q ss_pred CCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh
Q 036158 84 ADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR 163 (225)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~ 163 (225)
..+..++..+|++|+|+|+.+..+..+...+..+.. ...|+++|+||+|+.... ..+..
T Consensus 82 -----------~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~-----~~~~iiiv~NK~Dl~~~~---~~~~~-- 140 (179)
T cd01890 82 -----------YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE-----NNLEIIPVINKIDLPSAD---PERVK-- 140 (179)
T ss_pred -----------HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH-----cCCCEEEEEECCCCCcCC---HHHHH--
Confidence 122233456799999999975555444444433222 237899999999975432 12111
Q ss_pred cCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158 164 ECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~ 208 (225)
.++.+..+... ......|+.++.++++|++.+.+.+
T Consensus 141 ------~~~~~~~~~~~---~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 141 ------QQIEDVLGLDP---SEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred ------HHHHHHhCCCc---ccEEEeeccCCCCHHHHHHHHHhhC
Confidence 22222223211 1124567778899999999997654
No 90
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.74 E-value=1e-16 Score=140.18 Aligned_cols=163 Identities=16% Similarity=0.201 Sum_probs=106.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
...++|+++|++|+|||||+++|.+...... ...+.|.+...+.+.++++..+.||||||+.++. ..
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~--e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~-----------~~ 151 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQG--EAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT-----------SM 151 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccc--cCCceeecceEEEEEECCCcEEEEEECCCCcchh-----------hH
Confidence 3558999999999999999999998765332 2345677766677777334489999999987542 12
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
.......+|++++|+++++.......+.+..+.. ...|+++++||+|............+.+ ..-....+
T Consensus 152 r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~-----~~vPiIVviNKiDl~~~~~e~v~~~L~~-----~g~~~~~~ 221 (587)
T TIGR00487 152 RARGAKVTDIVVLVVAADDGVMPQTIEAISHAKA-----ANVPIIVAINKIDKPEANPDRVKQELSE-----YGLVPEDW 221 (587)
T ss_pred HHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHH-----cCCCEEEEEECcccccCCHHHHHHHHHH-----hhhhHHhc
Confidence 2234567899999999986666666555544332 2379999999999754321122222111 00011222
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNS 206 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~ 206 (225)
+.... ..+.||.++.++++|++.|..
T Consensus 222 ~~~~~----~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 222 GGDTI----FVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred CCCce----EEEEECCCCCChHHHHHhhhh
Confidence 22211 234677788999999998864
No 91
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.74 E-value=6.9e-17 Score=119.46 Aligned_cols=157 Identities=13% Similarity=0.123 Sum_probs=92.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT 100 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (225)
+|+++|.+|+|||||+|++.+...... ..|.......+..+.+..+.+|||||... +...+...
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~~~~ 64 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-----IPTVGFNVEMLQLEKHLSLTVWDVGGQEK-----------MRTVWKCY 64 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-----cCccCcceEEEEeCCceEEEEEECCCCHh-----------HHHHHHHH
Confidence 589999999999999999998775322 12222233344443456899999999642 22223334
Q ss_pred CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158 101 KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 178 (225)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (225)
...+|++++|+|+.+..+ ......++.+.+... ...|+++|+||+|..... ..++.... + .+...+..
T Consensus 65 ~~~~~~iv~v~D~~~~~~--~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~-----~-~~~~~~~~ 134 (160)
T cd04156 65 LENTDGLVYVVDSSDEAR--LDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TAEEITRR-----F-KLKKYCSD 134 (160)
T ss_pred hccCCEEEEEEECCcHHH--HHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CHHHHHHH-----c-CCcccCCC
Confidence 567899999999974321 112223333333221 247999999999975332 22222111 0 00011111
Q ss_pred cEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158 179 RCVLFDNKTKDTAKRTEQVGKLLSLVNS 206 (225)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~v~~l~~~i~~ 206 (225)
+-+. ..+.||.++.+++++++.|.+
T Consensus 135 ~~~~---~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 135 RDWY---VQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred CcEE---EEecccccCCChHHHHHHHhc
Confidence 1111 235677888999999998864
No 92
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.74 E-value=2.1e-16 Score=119.64 Aligned_cols=162 Identities=13% Similarity=0.096 Sum_probs=98.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
....+|+++|.+|+|||||++++........ .+|.......+.. .+..+.+|||||... +...
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~-----~~T~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~ 77 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTT-----IPTIGFNVETVEY-KNLKFTMWDVGGQDK-----------LRPL 77 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-----CCccccceEEEEE-CCEEEEEEECCCCHh-----------HHHH
Confidence 4458999999999999999999975443211 1233333444555 678899999999642 2233
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
+..++..+|++|+|+|++++-+-. ...+.+.+.+... ...|+++|.||.|..+.. ..++.... +. +.
T Consensus 78 ~~~~~~~ad~iI~v~D~t~~~s~~--~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~-----l~--~~ 146 (182)
T PTZ00133 78 WRHYYQNTNGLIFVVDSNDRERIG--DAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVTEK-----LG--LH 146 (182)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHH--HHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHHHH-----hC--CC
Confidence 445677889999999997432111 2223334333221 237899999999975432 22221111 00 01
Q ss_pred HcCCc-EEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 175 LCDNR-CVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 175 ~~~~~-~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
.+..+ ++.+ ..||.++.++++++++|.+.+.+
T Consensus 147 ~~~~~~~~~~----~~Sa~tg~gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 147 SVRQRNWYIQ----GCCATTAQGLYEGLDWLSANIKK 179 (182)
T ss_pred cccCCcEEEE----eeeCCCCCCHHHHHHHHHHHHHH
Confidence 11111 2222 34667789999999999876654
No 93
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.74 E-value=1.9e-16 Score=142.20 Aligned_cols=164 Identities=15% Similarity=0.131 Sum_probs=109.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCc--HHHHHHHHHH
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS--EFVSKEIVKC 96 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~--~~~~~~~~~~ 96 (225)
..+|+++|.+|+|||||+|+|+|.... . ...+++|.+.....+.+ ++..+.++||||+++..... ....+.+...
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~-v-gn~pGvTve~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQR-V-GNWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCc-c-CCCCCceEeeEEEEEEc-CceEEEEEECCCccccccccccccHHHHHHHH
Confidence 478999999999999999999998752 2 34578888877777777 77899999999998764321 1222222221
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
......+|++++|+|++ .+.. ...+...+.+ ...|+++++||+|..+.. .+..- .+++-+..
T Consensus 80 -~l~~~~aD~vI~VvDat-~ler-~l~l~~ql~e-----~giPvIvVlNK~Dl~~~~--~i~id--------~~~L~~~L 141 (772)
T PRK09554 80 -YILSGDADLLINVVDAS-NLER-NLYLTLQLLE-----LGIPCIVALNMLDIAEKQ--NIRID--------IDALSARL 141 (772)
T ss_pred -HHhccCCCEEEEEecCC-cchh-hHHHHHHHHH-----cCCCEEEEEEchhhhhcc--CcHHH--------HHHHHHHh
Confidence 12235789999999997 3322 2223333333 248999999999976443 22211 33344444
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
+.+++. .++.++.+++++.+.+.+..+
T Consensus 142 G~pVvp------iSA~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 142 GCPVIP------LVSTRGRGIEALKLAIDRHQA 168 (772)
T ss_pred CCCEEE------EEeecCCCHHHHHHHHHHhhh
Confidence 554443 344566889999999987764
No 94
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.74 E-value=3.2e-16 Score=116.09 Aligned_cols=157 Identities=19% Similarity=0.130 Sum_probs=92.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee---CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK---DGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
++|+++|.+|+|||||+|++.+...... ..+..+.......+.+. ....+.+|||||... +...
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----------~~~~ 67 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKD--YKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEE-----------FDAI 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHH-----------HHHh
Confidence 4799999999999999999997654221 11222222222333331 234799999999432 2223
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
...+...+|++++|++++++.+.. ....++..........|+++|.||+|.........++ ...+.+..
T Consensus 68 ~~~~~~~~~~~v~v~d~~~~~s~~--~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~---------~~~~~~~~ 136 (162)
T cd04106 68 TKAYYRGAQACILVFSTTDRESFE--AIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEE---------AEALAKRL 136 (162)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHH---------HHHHHHHc
Confidence 334567889999999987432222 2222332221111247999999999986543111111 33444444
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNS 206 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~ 206 (225)
+.+++. .|+..+.+++++++.|.+
T Consensus 137 ~~~~~~------~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 137 QLPLFR------TSVKDDFNVTELFEYLAE 160 (162)
T ss_pred CCeEEE------EECCCCCCHHHHHHHHHH
Confidence 544333 344556889999988864
No 95
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.74 E-value=8.2e-17 Score=124.41 Aligned_cols=137 Identities=15% Similarity=0.157 Sum_probs=90.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccccc-----------------------------cCCCCCceeEEEEEEEEeeCCceE
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKS-----------------------------KAGSSGVTKTCEMQRTMLKDGQVV 71 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~~~~~ 71 (225)
+|+++|++|+|||||+|+|+....... .....+.|.......+.+ ++..+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence 589999999999999999986543211 011256677777777777 78899
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158 72 NVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELE 151 (225)
Q Consensus 72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~ 151 (225)
.|+||||+.++ ...+......+|++|+|+|+..+....+...+..+.. .+ .+++++|+||+|...
T Consensus 80 ~liDTpG~~~~-----------~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~-~~---~~~iIvviNK~D~~~ 144 (208)
T cd04166 80 IIADTPGHEQY-----------TRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSL-LG---IRHVVVAVNKMDLVD 144 (208)
T ss_pred EEEECCcHHHH-----------HHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH-cC---CCcEEEEEEchhccc
Confidence 99999997432 1122234557899999999986665555554444433 22 146788999999865
Q ss_pred CCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158 152 DNDETLEDYLGRECPKPLKEILQLCDN 178 (225)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (225)
.....+.....+ +++++...+.
T Consensus 145 ~~~~~~~~i~~~-----~~~~~~~~~~ 166 (208)
T cd04166 145 YSEEVFEEIVAD-----YLAFAAKLGI 166 (208)
T ss_pred CCHHHHHHHHHH-----HHHHHHHcCC
Confidence 432223333334 5666666664
No 96
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.74 E-value=3.4e-16 Score=120.14 Aligned_cols=162 Identities=14% Similarity=0.177 Sum_probs=99.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
+.|+++|..|+|||||++++...... . ...+..+.......+.+ ++ ..+.+|||+|... +...+
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~-~-~~~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe~-----------~~~l~ 66 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFC-E-ACKSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQER-----------FNSIT 66 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCC-C-cCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCchh-----------hHHHH
Confidence 35899999999999999999876532 2 11222333444445555 44 5789999999642 23334
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEEG-AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
..++.++|++|+|+|++++.+-... .+++.+.+... ...|+++|.||+|+.... .+... ...++....
T Consensus 67 ~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~--~~~piilVgNK~DL~~~~--~v~~~-------~~~~~a~~~ 135 (202)
T cd04120 67 SAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCETDR--EISRQ-------QGEKFAQQI 135 (202)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECccccccc--ccCHH-------HHHHHHHhc
Confidence 4567789999999999855433332 23344443322 247999999999975432 11111 012222221
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
. .+.+| .+||+++.+++++++.+.+.+.+.
T Consensus 136 ~-~~~~~----etSAktg~gV~e~F~~l~~~~~~~ 165 (202)
T cd04120 136 T-GMRFC----EASAKDNFNVDEIFLKLVDDILKK 165 (202)
T ss_pred C-CCEEE----EecCCCCCCHHHHHHHHHHHHHHh
Confidence 1 12222 456677899999999998776543
No 97
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.74 E-value=1.3e-16 Score=119.88 Aligned_cols=156 Identities=14% Similarity=0.097 Sum_probs=95.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
+..+|+++|.+|+|||||++++++..... ...|.......+.+ .+..+.+|||||... +...+
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-----~~~t~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~ 76 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-----TSPTIGSNVEEIVY-KNIRFLMWDIGGQES-----------LRSSW 76 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-----cCCccccceEEEEE-CCeEEEEEECCCCHH-----------HHHHH
Confidence 46899999999999999999998765422 12333344455566 678899999999642 22333
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
..++.++|++++|+|++++-+ .....+.+.+.+... ...|+++++||+|..... ..++..+. +. ...
T Consensus 77 ~~~~~~~d~vi~V~D~s~~~~--~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~--~~~~i~~~-----l~--~~~ 145 (174)
T cd04153 77 NTYYTNTDAVILVIDSTDRER--LPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM--TPAEISES-----LG--LTS 145 (174)
T ss_pred HHHhhcCCEEEEEEECCCHHH--HHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC--CHHHHHHH-----hC--ccc
Confidence 345668899999999974321 111222333332221 247999999999975432 22222111 00 001
Q ss_pred cC-CcEEEeeCCCccccccHHHHHHHHHHHH
Q 036158 176 CD-NRCVLFDNKTKDTAKRTEQVGKLLSLVN 205 (225)
Q Consensus 176 ~~-~~~~~~~~~~~~~~~~~~~v~~l~~~i~ 205 (225)
.. ..+.. .+.||.++.++++++++|.
T Consensus 146 ~~~~~~~~----~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 146 IRDHTWHI----QGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred ccCCceEE----EecccCCCCCHHHHHHHHh
Confidence 11 12222 2456777899999999885
No 98
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.74 E-value=2.3e-16 Score=116.58 Aligned_cols=157 Identities=17% Similarity=0.182 Sum_probs=93.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
++|+++|.+|+|||||+|++++...... ..+++.........+ ++. .+.+|||||.... ...+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~l~ 66 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDE---YDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEY-----------SAMR 66 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCC---cCCcchheEEEEEEE-CCEEEEEEEEECCCCcch-----------HHHH
Confidence 6899999999999999999997664222 112222222223344 333 5778999996532 2222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
..+...+|++++|++.+++.+..+ ..++..+.+... ....|+++|.||+|..... ...++ ..++....
T Consensus 67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~~~-~~~~~---------~~~~~~~~ 135 (162)
T cd04138 67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAART-VSSRQ---------GQDLAKSY 135 (162)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccce-ecHHH---------HHHHHHHh
Confidence 334557799999999874322222 123334443321 1247999999999976532 11111 23333333
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~ 208 (225)
+..++ ..|+.++.+++++++.+.+.+
T Consensus 136 ~~~~~------~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 136 GIPYI------ETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred CCeEE------EecCCCCCCHHHHHHHHHHHh
Confidence 43322 345667799999999887543
No 99
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.74 E-value=2.8e-16 Score=116.42 Aligned_cols=157 Identities=14% Similarity=0.126 Sum_probs=93.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
++|+++|.+|+|||||++++........ ..+++.......+.. ++ ..+.+|||||...+. ...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~~ 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEK---YDPTIEDSYRKQIEV-DGQQCMLEILDTAGTEQFT-----------AMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc---cCCchhhhEEEEEEE-CCEEEEEEEEECCCccccc-----------hHH
Confidence 6899999999999999999997653221 112222222233444 33 357789999975432 222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
..+...+|++++|+|.++..+.+. ..+++.+.+... ....|+++|.||+|.........++ ...+.+..
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 136 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKD-TENVPMVLVGNKCDLEDERVVSREE---------GQALARQW 136 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceecHHH---------HHHHHHHc
Confidence 334567899999999974332222 223344443321 1247999999999976432111111 22333333
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV 207 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~ 207 (225)
+.++ ...|+.++.++.++++.+.+.
T Consensus 137 ~~~~------~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 137 GCPF------YETSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred CCeE------EEecCCCCCCHHHHHHHHHHh
Confidence 4222 244556678999999988654
No 100
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.73 E-value=4.7e-16 Score=114.90 Aligned_cols=159 Identities=13% Similarity=0.094 Sum_probs=94.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
.+|+++|.+|+|||||+|++++...... ..+..+.......+.+. ....+.+|||||.... .....
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----------~~~~~ 67 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEK--HESTTQASFFQKTVNIGGKRIDLAIWDTAGQERY-----------HALGP 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC--cCCccceeEEEEEEEECCEEEEEEEEECCchHHH-----------HHhhH
Confidence 4799999999999999999998765322 11222222222233331 1236899999995321 12222
Q ss_pred hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158 99 MTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
.....+|++++|+|..+..+... ..+++.+...... ..|+++|+||+|.........++ ..++.+..+
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~~~~~~~~~---------~~~~~~~~~ 136 (162)
T cd04123 68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLERQRVVSKSE---------AEEYAKSVG 136 (162)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccccCCCHHH---------HHHHHHHcC
Confidence 34567899999999874432222 2233444444332 47999999999976432111111 233444434
Q ss_pred CcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158 178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~ 208 (225)
..++ ..|+.++.+++++++.+.+.+
T Consensus 137 ~~~~------~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 137 AKHF------ETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred CEEE------EEeCCCCCCHHHHHHHHHHHh
Confidence 4333 334556689999999987654
No 101
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.73 E-value=4.7e-16 Score=117.62 Aligned_cols=161 Identities=14% Similarity=0.098 Sum_probs=99.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
+..++|+++|..|+|||||++++....... ..+|.......+.. .+..+.+|||||.. .+...
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-----~~pt~g~~~~~~~~-~~~~~~i~D~~Gq~-----------~~~~~ 77 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-----TIPTIGFNVETVEY-KNISFTVWDVGGQD-----------KIRPL 77 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCcc-----ccCCcceeEEEEEE-CCEEEEEEECCCCH-----------HHHHH
Confidence 556899999999999999999998654321 12233334444555 67889999999953 22333
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
+..++..+|++|+|+|+.++.+- .....++...+... ...|++++.||.|..... ..+++ .+.+.
T Consensus 78 ~~~~~~~a~~iI~V~D~s~~~s~--~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~---------~~~l~ 144 (181)
T PLN00223 78 WRHYFQNTQGLIFVVDSNDRDRV--VEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEI---------TDKLG 144 (181)
T ss_pred HHHHhccCCEEEEEEeCCcHHHH--HHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHH---------HHHhC
Confidence 44566788999999999743221 12333444443221 247999999999975432 22222 11111
Q ss_pred Hc--CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 175 LC--DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 175 ~~--~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
-. ..+.+.+ .+.||.++.++.+++++|.+.+..
T Consensus 145 l~~~~~~~~~~---~~~Sa~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 145 LHSLRQRHWYI---QSTCATSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred ccccCCCceEE---EeccCCCCCCHHHHHHHHHHHHhh
Confidence 11 1111111 234667789999999999876544
No 102
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.73 E-value=2.9e-17 Score=139.84 Aligned_cols=143 Identities=17% Similarity=0.268 Sum_probs=96.8
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhCCccccc-----------------------------cCCCCCceeEEEEEEEEe
Q 036158 15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKS-----------------------------KAGSSGVTKTCEMQRTML 65 (225)
Q Consensus 15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~ 65 (225)
+.++.++|+++|+.++|||||+++|+....... ....++.|++.....+++
T Consensus 2 ~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~ 81 (425)
T PRK12317 2 KEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET 81 (425)
T ss_pred CCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec
Confidence 346789999999999999999999985432211 111467888888888888
Q ss_pred eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhcccccccEEEE
Q 036158 66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRN--RFSEEEGAAIHILESLFGKKISDYMIVV 143 (225)
Q Consensus 66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~vv 143 (225)
++..+.||||||+.++. ..+ ......+|++++|+|+.+ .....+.+.+..+.. ++. ++++++
T Consensus 82 -~~~~i~liDtpG~~~~~-------~~~----~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~---~~iivv 145 (425)
T PRK12317 82 -DKYYFTIVDCPGHRDFV-------KNM----ITGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGI---NQLIVA 145 (425)
T ss_pred -CCeEEEEEECCCcccch-------hhH----hhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCC---CeEEEE
Confidence 78899999999975432 111 123457899999999986 555555555555443 221 478999
Q ss_pred EecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158 144 FTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 178 (225)
Q Consensus 144 ~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (225)
+||+|+.......+....++ +++++..++.
T Consensus 146 iNK~Dl~~~~~~~~~~~~~~-----i~~~l~~~g~ 175 (425)
T PRK12317 146 INKMDAVNYDEKRYEEVKEE-----VSKLLKMVGY 175 (425)
T ss_pred EEccccccccHHHHHHHHHH-----HHHHHHhhCC
Confidence 99999865322233333334 5666665553
No 103
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.73 E-value=3.6e-16 Score=120.20 Aligned_cols=165 Identities=12% Similarity=0.046 Sum_probs=99.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK--DGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
++|+++|.+|+|||||++++++...... ..+....+.....+.++ ....+.+|||||...+ ...+
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~--~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~-----------~~~~ 67 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQH--YKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERF-----------GGMT 67 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCceeEEEEEEEEEECCCCEEEEEEEECCCchhh-----------hhhH
Confidence 4799999999999999999997653221 11222222223334442 2347899999996422 2233
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhc--ccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEEG-AAIHILESLFG--KKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~--~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
..++..+|++|+|+|..++.+-... .++..+..... .....|+++|.||+|+........++ +.++.+
T Consensus 68 ~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~---------~~~~~~ 138 (201)
T cd04107 68 RVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQ---------MDQFCK 138 (201)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHH---------HHHHHH
Confidence 4456788999999999744332222 22333433221 12347999999999986322111111 344444
Q ss_pred HcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 175 LCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 175 ~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
..+. .+ ...|+..+.+++++++.|.+.+.+..
T Consensus 139 ~~~~~~~------~e~Sak~~~~v~e~f~~l~~~l~~~~ 171 (201)
T cd04107 139 ENGFIGW------FETSAKEGINIEEAMRFLVKNILAND 171 (201)
T ss_pred HcCCceE------EEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 4442 22 24466677899999999998776653
No 104
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.73 E-value=3.9e-16 Score=115.89 Aligned_cols=159 Identities=19% Similarity=0.150 Sum_probs=94.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
.+|+++|.+|+|||||+|++.+...... ...++.......... ++ ..+.+|||||..+.. ...
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~-----------~~~ 65 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDD---YDPTIEDSYRKQIEI-DGEVCLLDILDTAGQEEFS-----------AMR 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcc---cCCchhhhEEEEEEE-CCEEEEEEEEECCCcccch-----------HHH
Confidence 3799999999999999999997664221 112222222233333 33 468899999976432 111
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
......+|++++|+|++++-+... ..+...+.+... ....|+++|.||+|.........++ ...+.+..
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~pii~v~nK~Dl~~~~~~~~~~---------~~~~~~~~ 135 (164)
T smart00173 66 DQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKD-RDDVPIVLVGNKCDLESERVVSTEE---------GKELARQW 135 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceEcHHH---------HHHHHHHc
Confidence 223456799999999974322222 222333333221 1247999999999976532111111 23344444
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
+.++ .+.|+.++.+++++++.|.+.+.
T Consensus 136 ~~~~------~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 136 GCPF------LETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred CCEE------EEeecCCCCCHHHHHHHHHHHHh
Confidence 4333 34455667899999999976654
No 105
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.73 E-value=2.9e-16 Score=116.25 Aligned_cols=158 Identities=15% Similarity=0.117 Sum_probs=92.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
++|+++|++|+|||||+|+|++........ +..+.......+.+. ....+.+|||||.... .....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----------~~~~~ 67 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLA--ATIGVDFKVKTLTVDGKKVKLAIWDTAGQERF-----------RTLTS 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccC--CcccceEEEEEEEECCEEEEEEEEECCCchhh-----------hhhhH
Confidence 479999999999999999999876432222 222222222223331 2247899999996432 12222
Q ss_pred hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158 99 MTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
.....+|++++|+|..+..+... ..++..+.... .....|+++|.||+|..... ...++ ..++....+
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~~~iv~nK~D~~~~~-~~~~~---------~~~~~~~~~ 136 (161)
T cd01863 68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYS-TNNDIVKMLVGNKIDKENRE-VTREE---------GLKFARKHN 136 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhC-CCCCCcEEEEEECCcccccc-cCHHH---------HHHHHHHcC
Confidence 34567899999999874333222 12333344332 22347899999999986332 11221 233333333
Q ss_pred CcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158 178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSV 207 (225)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~ 207 (225)
..++ ..|+..+.+++++++.+.+.
T Consensus 137 ~~~~------~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 137 MLFI------ETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred CEEE------EEecCCCCCHHHHHHHHHHh
Confidence 3332 34455668999999887653
No 106
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.73 E-value=7.4e-16 Score=117.61 Aligned_cols=163 Identities=16% Similarity=0.189 Sum_probs=95.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEE--EEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTC--EMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
++|+++|.+|+|||||++++++..... .. ...|... ....+.+ ++. .+.+|||||..... .
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~-~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~-----------~ 65 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLV-GP--YQNTIGAAFVAKRMVV-GERVVTLGIWDTAGSERYE-----------A 65 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCC-cC--cccceeeEEEEEEEEE-CCEEEEEEEEECCCchhhh-----------h
Confidence 479999999999999999999766421 11 1222222 2223444 343 56799999965321 1
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
.....+..+|++++|+|+++.-+... ..+++.+... ....|+++|.||+|+.+... ...... .....++..
T Consensus 66 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~~~~-~~~~v~----~~~~~~~~~ 137 (193)
T cd04118 66 MSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL---EEHCKIYLCGTKSDLIEQDR-SLRQVD----FHDVQDFAD 137 (193)
T ss_pred hhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc---CCCCCEEEEEEccccccccc-ccCccC----HHHHHHHHH
Confidence 12234567899999999974322211 2234444332 22479999999999754320 000000 011233333
Q ss_pred HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
..+..++ ..|+.++.++++|++.+.+.+.++
T Consensus 138 ~~~~~~~------~~Sa~~~~gv~~l~~~i~~~~~~~ 168 (193)
T cd04118 138 EIKAQHF------ETSSKTGQNVDELFQKVAEDFVSR 168 (193)
T ss_pred HcCCeEE------EEeCCCCCCHHHHHHHHHHHHHHh
Confidence 3343332 345566789999999999877554
No 107
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.73 E-value=8.9e-16 Score=117.86 Aligned_cols=163 Identities=17% Similarity=0.163 Sum_probs=98.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
..++|+++|.+|+|||||++++.+...... ..+..+.......+.+ ++ ..+.||||||.... ..
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~-----------~~ 70 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGS--YITTIGVDFKIRTVEI-NGERVKLQIWDTAGQERF-----------RT 70 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCC--cCccccceeEEEEEEE-CCEEEEEEEEeCCCchhH-----------HH
Confidence 358999999999999999999997764221 1122222222233444 33 36889999995422 22
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
....+...++++++|+|+.++.+-. ....++..+.......|+++|.||+|+.+......++ ..++...
T Consensus 71 ~~~~~~~~a~~iilv~D~~~~~s~~--~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~---------~~~~~~~ 139 (199)
T cd04110 71 ITSTYYRGTHGVIVVYDVTNGESFV--NVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETED---------AYKFAGQ 139 (199)
T ss_pred HHHHHhCCCcEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHH---------HHHHHHH
Confidence 2334566789999999997442222 2223333332222347899999999976543111111 2333333
Q ss_pred cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
.+..++ ..|+.++.+++++++.|.+.+...
T Consensus 140 ~~~~~~------e~Sa~~~~gi~~lf~~l~~~~~~~ 169 (199)
T cd04110 140 MGISLF------ETSAKENINVEEMFNCITELVLRA 169 (199)
T ss_pred cCCEEE------EEECCCCcCHHHHHHHHHHHHHHh
Confidence 343322 345566789999999998777554
No 108
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.73 E-value=1.7e-16 Score=118.29 Aligned_cols=159 Identities=14% Similarity=0.157 Sum_probs=92.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEe-eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTML-KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (225)
+|+++|.+|+|||||+|++.+...... .+....... ....+ .....+.+|||||..+.. ..+ ..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~----~~ 66 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN---VPRVLPEIT-IPADVTPERVPTTIVDTSSRPQDR-------ANL----AA 66 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc---CCCcccceE-eeeeecCCeEEEEEEeCCCchhhh-------HHH----hh
Confidence 799999999999999999998664222 111111111 11111 134578999999976431 111 12
Q ss_pred cCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158 100 TKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
....+|++++|+|..++.+... ..++..++... . ..|+++|.||+|+.+.. ........ +..+.....
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~--~~pviiv~nK~Dl~~~~--~~~~~~~~-----~~~~~~~~~ 136 (166)
T cd01893 67 EIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-V--KVPIILVGNKSDLRDGS--SQAGLEEE-----MLPIMNEFR 136 (166)
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEEchhccccc--chhHHHHH-----HHHHHHHHh
Confidence 3467899999999874433333 12444455432 2 47999999999986543 11111111 222222222
Q ss_pred CcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158 178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~ 208 (225)
. . ......|+.++.+++++++.+.+.+
T Consensus 137 ~-~---~~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 137 E-I---ETCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred c-c---cEEEEeccccccCHHHHHHHHHHHh
Confidence 1 0 1223556677799999999887654
No 109
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.73 E-value=2.3e-16 Score=120.22 Aligned_cols=164 Identities=15% Similarity=0.170 Sum_probs=97.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
+|+++|.+|+|||||++++........ ..+++.........+ ++. .+.+|||||.... .....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~---~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~~~ 65 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVET---YDPTIEDSYRKQVVV-DGQPCMLEVLDTAGQEEY-----------TALRD 65 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcc---CCCchHhhEEEEEEE-CCEEEEEEEEECCCchhh-----------HHHHH
Confidence 589999999999999999986653221 112121111222334 343 5889999996432 12223
Q ss_pred hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 99 MTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGK-KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
.++..+|++|+|+|.++..+... ..++..+...... ....|+++|.||+|+.........+ ..++....
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~---------~~~~~~~~ 136 (190)
T cd04144 66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEE---------GAALARRL 136 (190)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHH---------HHHHHHHh
Confidence 35567899999999974433222 2344444443321 1347999999999976432111111 23333444
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCC
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQ 214 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~ 214 (225)
+..+ ...||.++.+++++++.+.+.+.++...
T Consensus 137 ~~~~------~e~SAk~~~~v~~l~~~l~~~l~~~~~~ 168 (190)
T cd04144 137 GCEF------IEASAKTNVNVERAFYTLVRALRQQRQG 168 (190)
T ss_pred CCEE------EEecCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 4333 2446667799999999999877665443
No 110
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.73 E-value=1.1e-16 Score=143.33 Aligned_cols=162 Identities=14% Similarity=0.142 Sum_probs=108.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
...++|+++|+.++|||||+++|.+..+... ...+.|.....+.+.+ ++..++||||||+.++. ..
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~--e~~GIT~~iga~~v~~-~~~~ItfiDTPGhe~F~-----------~m 353 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAG--EAGGITQHIGAYQVET-NGGKITFLDTPGHEAFT-----------AM 353 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccc--ccCceeeeccEEEEEE-CCEEEEEEECCCCccch-----------hH
Confidence 4568999999999999999999987665322 2456677777777888 67899999999987652 11
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
+......+|++|+|++++++....+.+.+..+.. ...|++|++||+|+... ..+....+ +.. ...+.+.+
T Consensus 354 ~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~-----~~vPiIVviNKiDl~~a---~~e~V~~e-L~~-~~~~~e~~ 423 (787)
T PRK05306 354 RARGAQVTDIVVLVVAADDGVMPQTIEAINHAKA-----AGVPIIVAINKIDKPGA---NPDRVKQE-LSE-YGLVPEEW 423 (787)
T ss_pred HHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHh-----cCCcEEEEEECcccccc---CHHHHHHH-HHH-hcccHHHh
Confidence 1234456799999999987766666666654443 23789999999998543 22222222 000 01112223
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNS 206 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~ 206 (225)
+..+. ..+.|+.++.++++|++.|..
T Consensus 424 g~~vp----~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 424 GGDTI----FVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred CCCce----EEEEeCCCCCCchHHHHhhhh
Confidence 32222 234567778999999999864
No 111
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=3e-16 Score=124.54 Aligned_cols=131 Identities=19% Similarity=0.243 Sum_probs=98.6
Q ss_pred CCCCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCc-HHHH
Q 036158 12 PTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS-EFVS 90 (225)
Q Consensus 12 ~~~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~-~~~~ 90 (225)
+++-....++|+|.|.+|+|||||++.|++.++ ....++.+|...+...++. ++..+.+|||||+-|-.... ..+.
T Consensus 161 LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp--EvA~YPFTTK~i~vGhfe~-~~~R~QvIDTPGlLDRPl~ErN~IE 237 (346)
T COG1084 161 LPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP--EVAPYPFTTKGIHVGHFER-GYLRIQVIDTPGLLDRPLEERNEIE 237 (346)
T ss_pred CCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC--ccCCCCccccceeEeeeec-CCceEEEecCCcccCCChHHhcHHH
Confidence 445556789999999999999999999999887 4556889999999999998 78899999999999754322 1222
Q ss_pred HHHHHHHhhcCCCccEEEEEEeCCC--CCCHH-HHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158 91 KEIVKCIGMTKDGIHAVLVVFSVRN--RFSEE-EGAAIHILESLFGKKISDYMIVVFTGGDELED 152 (225)
Q Consensus 91 ~~~~~~~~~~~~~~~~ii~v~~~~~--~~~~~-~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~ 152 (225)
.+-..++. .-.++|+|++|.+. .++-+ +..+++.++..|. .|+++|+||+|....
T Consensus 238 ~qAi~AL~---hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~~~ 295 (346)
T COG1084 238 RQAILALR---HLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIADE 295 (346)
T ss_pred HHHHHHHH---HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEecccccch
Confidence 22222221 23489999999863 45544 4567788888874 699999999997644
No 112
>COG2262 HflX GTPases [General function prediction only]
Probab=99.73 E-value=1.8e-16 Score=129.40 Aligned_cols=169 Identities=22% Similarity=0.197 Sum_probs=118.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
....+.|+++|-||+|||||+|+|++..... ...-..|.++....+.+++++.+.|-||-||.+ .-..++...+..
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~--~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~--~LP~~LV~AFks 264 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYV--ADQLFATLDPTTRRIELGDGRKVLLTDTVGFIR--DLPHPLVEAFKS 264 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeec--cccccccccCceeEEEeCCCceEEEecCccCcc--cCChHHHHHHHH
Confidence 4567999999999999999999999887632 345566777777778886789999999999984 334556666666
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEEGA-AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
.+... ..+|+++.|+|+.++.-....+ ..+.|.++ +- ...|+++|+||+|.+.+. .. +..+-.
T Consensus 265 TLEE~-~~aDlllhVVDaSdp~~~~~~~~v~~vL~el-~~-~~~p~i~v~NKiD~~~~~--~~-----------~~~~~~ 328 (411)
T COG2262 265 TLEEV-KEADLLLHVVDASDPEILEKLEAVEDVLAEI-GA-DEIPIILVLNKIDLLEDE--EI-----------LAELER 328 (411)
T ss_pred HHHHh-hcCCEEEEEeecCChhHHHHHHHHHHHHHHc-CC-CCCCEEEEEecccccCch--hh-----------hhhhhh
Confidence 55443 3789999999998653322222 33444443 22 237999999999988764 10 111111
Q ss_pred HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
.. .+..+.||.++.+++.|++.|.+.+...
T Consensus 329 ~~-------~~~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 329 GS-------PNPVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred cC-------CCeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 11 1344567778899999999999988754
No 113
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.73 E-value=5.9e-16 Score=113.60 Aligned_cols=156 Identities=17% Similarity=0.153 Sum_probs=91.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
++|+++|.+|+|||||+|++++....... .+..+.......+..+ ....+.+||+||... +.....
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~~~~ 67 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENY--KSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER-----------FRSITP 67 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCcc--CCceeeeeEEEEEEECCEEEEEEEEecCChHH-----------HHHHHH
Confidence 47999999999999999999988764331 1122222222233331 235789999999632 222333
Q ss_pred hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158 99 MTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
.....+|++++|+|+.++-+... ..++..+..... ...|+++++||+|...+.....++ .+.+...++
T Consensus 68 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~---------~~~~~~~~~ 136 (159)
T cd00154 68 SYYRGAHGAILVYDITNRESFENLDKWLKELKEYAP--ENIPIILVGNKIDLEDQRQVSTEE---------AQQFAKENG 136 (159)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEcccccccccccHHH---------HHHHHHHcC
Confidence 44567899999999974221111 223333333221 237999999999986232112111 334444444
Q ss_pred CcEEEeeCCCccccccHHHHHHHHHHHH
Q 036158 178 NRCVLFDNKTKDTAKRTEQVGKLLSLVN 205 (225)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~ 205 (225)
..+...+ +..+.++++++..|.
T Consensus 137 ~~~~~~s------a~~~~~i~~~~~~i~ 158 (159)
T cd00154 137 LLFFETS------AKTGENVEELFQSLA 158 (159)
T ss_pred CeEEEEe------cCCCCCHHHHHHHHh
Confidence 4444333 344578899888774
No 114
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.73 E-value=2.4e-15 Score=111.59 Aligned_cols=159 Identities=13% Similarity=0.071 Sum_probs=91.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCc-cccccCCCCCceeEEEEEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKR-AFKSKAGSSGVTKTCEMQRTMLK--DGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~-~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
++|+++|.+|+|||||++++.... .+... ..+............+. ....+.+|||||.. .+...
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----------~~~~~ 68 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKN-YLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE-----------LYSDM 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcc-CCCceEEEEEEEEEEeCCCCEEEEEEEECCCHH-----------HHHHH
Confidence 479999999999999999998542 22221 11121122222223331 33589999999942 22223
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
+......+|++++|+|.++..+... ..+++.+... ....|+++|.||+|..+.. ...... .+.+...
T Consensus 69 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~~--~~~~~~-------~~~~~~~ 136 (164)
T cd04101 69 VSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTA---SKHMPGVLVGNKMDLADKA--EVTDAQ-------AQAFAQA 136 (164)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHh---CCCCCEEEEEECccccccc--CCCHHH-------HHHHHHH
Confidence 3345568899999999974322221 2233333332 2347999999999975442 111110 1222222
Q ss_pred cCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158 176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~ 208 (225)
.+..+ ...|+.++.+++++++.+.++.
T Consensus 137 ~~~~~------~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 137 NQLKF------FKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred cCCeE------EEEeCCCCCChHHHHHHHHHHh
Confidence 23222 2345667799999999987754
No 115
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.73 E-value=1e-15 Score=114.36 Aligned_cols=163 Identities=14% Similarity=0.094 Sum_probs=95.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
++|+++|++|+|||||+|++++....... .+..+.......+.+ ++. .+.+|||||.... ....
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~-----------~~~~ 66 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQY--KATIGADFLTKEVTV-DDKLVTLQIWDTAGQERF-----------QSLG 66 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCc--CCccceEEEEEEEEE-CCEEEEEEEEeCCChHHH-----------HhHH
Confidence 47999999999999999999987642221 112222222233444 333 5679999996422 2222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEEG-AAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
......+|++|+++|+.++.+.... .+...+...... ....|+++|.||+|...+.....++ ...+.+
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~ 137 (172)
T cd01862 67 VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKK---------AQQWCQ 137 (172)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHH---------HHHHHH
Confidence 3455678999999999744322221 122222222211 1247999999999987432111221 233444
Q ss_pred HcC-CcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 175 LCD-NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 175 ~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
..+ ..++ ..|+.++.+++++++.+.+.+.+.
T Consensus 138 ~~~~~~~~------~~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 138 SNGNIPYF------ETSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred HcCCceEE------EEECCCCCCHHHHHHHHHHHHHhc
Confidence 444 2222 344556789999999998766554
No 116
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.72 E-value=1e-15 Score=114.57 Aligned_cols=164 Identities=16% Similarity=0.110 Sum_probs=94.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
.++|+++|++|+|||||++++++...... ..+..........+.+ ++ ..+.+|||||..++. . ..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-------~---~~ 68 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPER--TEATIGVDFRERTVEI-DGERIKVQLWDTAGQERFR-------K---SM 68 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCc--cccceeEEEEEEEEEE-CCeEEEEEEEeCCChHHHH-------H---hh
Confidence 37899999999999999999987653211 1122222233334444 33 478999999954221 1 12
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEG-AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
+..+...+|++++|+|++++.+.... .++..+.... .....|+++|.||+|+....... .+. ..++.+.
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~-~~~--------~~~~~~~ 138 (170)
T cd04115 69 VQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHS-LPNEVPRILVGNKCDLREQIQVP-TDL--------AQRFADA 138 (170)
T ss_pred HHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhc-CCCCCCEEEEEECccchhhcCCC-HHH--------HHHHHHH
Confidence 33456788999999999754333322 2233333322 11347999999999976443111 111 2334444
Q ss_pred cCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158 176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~ 208 (225)
.+..++..+.... ....++++++..+.+.+
T Consensus 139 ~~~~~~e~Sa~~~---~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 139 HSMPLFETSAKDP---SENDHVEAIFMTLAHKL 168 (170)
T ss_pred cCCcEEEEeccCC---cCCCCHHHHHHHHHHHh
Confidence 4444433333221 12578888888776544
No 117
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.72 E-value=5.8e-16 Score=115.04 Aligned_cols=159 Identities=16% Similarity=0.137 Sum_probs=94.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
+.+|+++|.+|+|||||++++...... .. ..+++.......+.+ ++ ..+.+|||||.... ...
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~-~~--~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~ 65 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFV-EK--YDPTIEDSYRKQVEV-DGQQCMLEILDTAGTEQF-----------TAM 65 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCC-cc--cCCcchheEEEEEEE-CCEEEEEEEEECCCcccc-----------hhH
Confidence 368999999999999999999855421 11 122222222233444 33 35779999997533 122
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
...++..+|++++|+|.++..+... ..++..+.... .....|+++|.||+|+........++ ..++.+.
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~ 135 (164)
T cd04175 66 RDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVK-DTEDVPMILVGNKCDLEDERVVGKEQ---------GQNLARQ 135 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECCcchhccEEcHHH---------HHHHHHH
Confidence 2234567799999999874332222 22333333321 12347999999999976542111111 2333344
Q ss_pred cCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158 176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~ 208 (225)
.+.++ ...|+.++.++++++..+.+.+
T Consensus 136 ~~~~~------~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 136 WGCAF------LETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred hCCEE------EEeeCCCCCCHHHHHHHHHHHh
Confidence 44333 2445567799999999987654
No 118
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.72 E-value=6.6e-16 Score=115.18 Aligned_cols=156 Identities=17% Similarity=0.098 Sum_probs=93.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee---CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK---DGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
++|+++|.+|+|||||+++++....... ...|.........+. ....+.+|||||.......
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----------- 65 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGL----------- 65 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC----CCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccc-----------
Confidence 4799999999999999999986553211 122333333332221 2247899999997643211
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
.......+|++|+|+|..++.+-.. ..+++.+..... ..|+++|.||+|+.... ... + ..+..+.
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~~---~~~---~-----~~~~~~~ 131 (166)
T cd00877 66 RDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDRK---VKA---K-----QITFHRK 131 (166)
T ss_pred cHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhccccc---CCH---H-----HHHHHHH
Confidence 1123457899999999974433222 223344444332 48999999999976321 111 0 1122222
Q ss_pred cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
.+..++ ..|++++.+++++++.|.+.+.+
T Consensus 132 ~~~~~~------e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 132 KNLQYY------EISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred cCCEEE------EEeCCCCCChHHHHHHHHHHHHh
Confidence 222222 44667779999999999877755
No 119
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.72 E-value=2.3e-16 Score=118.19 Aligned_cols=159 Identities=16% Similarity=0.109 Sum_probs=94.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
.+.++|+++|++|+|||||+++|.+...... ..|.......+.+ .+..+.+|||||... +...
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~-----~~t~g~~~~~i~~-~~~~~~~~D~~G~~~-----------~~~~ 74 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHI-----TPTQGFNIKTVQS-DGFKLNVWDIGGQRA-----------IRPY 74 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCccc-----CCCCCcceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 4579999999999999999999998753211 1222233344555 678899999999642 2233
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
+..+...+|++++|+|+....+. .....++...... ....|+++++||+|..... ..+++... + .+.
T Consensus 75 ~~~~~~~~~~ii~v~D~~~~~~~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~i~~~-----l-~~~- 143 (173)
T cd04155 75 WRNYFENTDCLIYVIDSADKKRL--EEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEEIAEA-----L-NLH- 143 (173)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHH--HHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHHHHHH-----c-CCc-
Confidence 33455678999999998732111 1112222222111 1247999999999976542 23333222 0 000
Q ss_pred HcCCcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158 175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNS 206 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~ 206 (225)
....+... ....|+.++.++++++++|.+
T Consensus 144 ~~~~~~~~---~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 144 DLRDRTWH---IQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred ccCCCeEE---EEEeECCCCCCHHHHHHHHhc
Confidence 00111111 124577888999999998853
No 120
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.72 E-value=1e-15 Score=116.44 Aligned_cols=161 Identities=17% Similarity=0.174 Sum_probs=95.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
++|+++|.+|+|||||++++.+...... ..+..+.......+.+ ++ ..+.+|||||.... ....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~g~~~~-----------~~~~ 66 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSES--TKSTIGVDFKIKTVYI-ENKIIKLQIWDTNGQERF-----------RSLN 66 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHHH-----------HhhH
Confidence 4799999999999999999997764221 1222222233333444 33 36789999995422 2233
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
......+|++|+|+|.+++.+-.. ..++..+...... ..|++++.||.|..+......++ .+.+.+..
T Consensus 67 ~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~--~~~~ivv~nK~Dl~~~~~v~~~~---------~~~~~~~~ 135 (188)
T cd04125 67 NSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARE--NVIKVIVANKSDLVNNKVVDSNI---------AKSFCDSL 135 (188)
T ss_pred HHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECCCCcccccCCHHH---------HHHHHHHc
Confidence 345668899999999974422222 1233333333222 36899999999976443111111 12233333
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
+..++ ..|+.++.+++++++.+.+.+..+
T Consensus 136 ~~~~~------evSa~~~~~i~~~f~~l~~~~~~~ 164 (188)
T cd04125 136 NIPFF------ETSAKQSINVEEAFILLVKLIIKR 164 (188)
T ss_pred CCeEE------EEeCCCCCCHHHHHHHHHHHHHHH
Confidence 33333 334556689999999888777654
No 121
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.72 E-value=1.2e-16 Score=121.23 Aligned_cols=163 Identities=9% Similarity=0.049 Sum_probs=96.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
....+|+++|.+|+|||||+|++.+...... .+|.......+.+ .+..+.++||||... ....
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~~~D~~G~~~-----------~~~~ 77 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH-----QPTQHPTSEELAI-GNIKFTTFDLGGHQQ-----------ARRL 77 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccccceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 4458999999999999999999998754221 1233333344555 677899999999642 1223
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
+..++..+|++++|+|+.++-+ .......+.+.+.. ....|+++|+||+|..... ..++.... +. +.....
T Consensus 78 ~~~~~~~ad~ii~vvD~~~~~~--~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~--~~~~i~~~-l~--l~~~~~ 150 (184)
T smart00178 78 WKDYFPEVNGIVYLVDAYDKER--FAESKRELDALLSDEELATVPFLILGNKIDAPYAA--SEDELRYA-LG--LTNTTG 150 (184)
T ss_pred HHHHhCCCCEEEEEEECCcHHH--HHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCC--CHHHHHHH-cC--CCcccc
Confidence 3456678999999999863311 11122233333221 1247999999999975332 22222211 00 000000
Q ss_pred H---cCCcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158 175 L---CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNS 206 (225)
Q Consensus 175 ~---~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~ 206 (225)
. .+.+.. ...+.|+.++.++++++++|.+
T Consensus 151 ~~~~~~~~~~---~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 151 SKGKVGVRPL---EVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred cccccCCcee---EEEEeecccCCChHHHHHHHHh
Confidence 0 011211 2345667778999999999854
No 122
>PLN03118 Rab family protein; Provisional
Probab=99.72 E-value=1.5e-15 Score=117.70 Aligned_cols=170 Identities=14% Similarity=0.105 Sum_probs=100.2
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHH
Q 036158 13 TSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKD-GQVVNVIDTPGLFDSSADSEFVSK 91 (225)
Q Consensus 13 ~~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~ 91 (225)
.++....++|+++|.+|+|||||+++|++..... ..+..+.......+.+.+ ...+.||||||...+
T Consensus 8 ~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~--------- 75 (211)
T PLN03118 8 SSGYDLSFKILLIGDSGVGKSSLLVSFISSSVED---LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERF--------- 75 (211)
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHHhCCCCC---cCCCceeEEEEEEEEECCEEEEEEEEECCCchhh---------
Confidence 3444567899999999999999999999876421 122222233333444422 247899999996543
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHH
Q 036158 92 EIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGA-AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 170 (225)
Q Consensus 92 ~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~ 170 (225)
......++..+|++|+|+|..++.+..... .+......+......|+++|.||+|+........++ ..
T Consensus 76 --~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~---------~~ 144 (211)
T PLN03118 76 --RTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREE---------GM 144 (211)
T ss_pred --HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHH---------HH
Confidence 122233456789999999997443222221 121122222222236889999999976443111111 22
Q ss_pred HHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 171 EILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
.+....+..+ ...|+..+.+++++++.|.+.+.+.
T Consensus 145 ~~~~~~~~~~------~e~SAk~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 145 ALAKEHGCLF------LECSAKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred HHHHHcCCEE------EEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 2333333222 2345566789999999999877654
No 123
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.72 E-value=5.3e-16 Score=115.83 Aligned_cols=157 Identities=15% Similarity=0.114 Sum_probs=93.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT 100 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (225)
+|+++|.+|+|||||+|++.+... . ....|.......+.. .+..+.++||||... +...+..+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~--~---~~~~t~g~~~~~~~~-~~~~~~i~D~~G~~~-----------~~~~~~~~ 63 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIP--K---KVAPTVGFTPTKLRL-DKYEVCIFDLGGGAN-----------FRGIWVNY 63 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCC--c---cccCcccceEEEEEE-CCEEEEEEECCCcHH-----------HHHHHHHH
Confidence 489999999999999999997621 1 112222233344555 678899999999532 23334456
Q ss_pred CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158 101 KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 178 (225)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (225)
+..+|++++|+|+.+..+. .....++....... ...|+++|.||.|..... ...+..... .+..+.+..+.
T Consensus 64 ~~~a~~ii~V~D~s~~~s~--~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~--~~~~i~~~~---~l~~~~~~~~~ 136 (167)
T cd04161 64 YAEAHGLVFVVDSSDDDRV--QEVKEILRELLQHPRVSGKPILVLANKQDKKNAL--LGADVIEYL---SLEKLVNENKS 136 (167)
T ss_pred HcCCCEEEEEEECCchhHH--HHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC--CHHHHHHhc---CcccccCCCCc
Confidence 6788999999999743221 12233344333221 247999999999976543 333333320 01222222222
Q ss_pred cEEEeeCCCccccccH------HHHHHHHHHHH
Q 036158 179 RCVLFDNKTKDTAKRT------EQVGKLLSLVN 205 (225)
Q Consensus 179 ~~~~~~~~~~~~~~~~------~~v~~l~~~i~ 205 (225)
++..+ .+||.++ .++.+-+++|.
T Consensus 137 ~~~~~----~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 137 LCHIE----PCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred eEEEE----EeEceeCCCCccccCHHHHHHHHh
Confidence 33333 2344444 78999998885
No 124
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.72 E-value=2.7e-16 Score=126.61 Aligned_cols=156 Identities=22% Similarity=0.327 Sum_probs=115.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCcccccc------CCCCCceeEEEEEEEEeeCCc---eEEEEeCCCCCCCCCCc
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSK------AGSSGVTKTCEMQRTMLKDGQ---VVNVIDTPGLFDSSADS 86 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~------~~~~~~t~~~~~~~~~~~~~~---~~~liDtPG~~~~~~~~ 86 (225)
..-.++|+++|++|+|||||+|+|++....... ......|.....+...+.++. .++++|||||+|+-.+
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN- 98 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN- 98 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc-
Confidence 355789999999999999999999988543221 111235555666665553332 7999999999997544
Q ss_pred HHHHHHHHHHHh------------------hcCCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 036158 87 EFVSKEIVKCIG------------------MTKDGIHAVLVVFSV-RNRFSEEEGAAIHILESLFGKKISDYMIVVFTGG 147 (225)
Q Consensus 87 ~~~~~~~~~~~~------------------~~~~~~~~ii~v~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~ 147 (225)
..-|+-+..++. ....++|++||.+.. .+.+...|.+.|+.|.+. .+++.|+.|+
T Consensus 99 s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~------vNlIPVI~Ka 172 (373)
T COG5019 99 SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR------VNLIPVIAKA 172 (373)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc------cCeeeeeecc
Confidence 444444444442 234678999999975 468999999999888875 7999999999
Q ss_pred CCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEE-eeC
Q 036158 148 DELEDNDETLEDYLGRECPKPLKEILQLCDNRCVL-FDN 185 (225)
Q Consensus 148 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 185 (225)
|.+... .+..+.+. +.+.++.++++++. |++
T Consensus 173 D~lT~~--El~~~K~~-----I~~~i~~~nI~vf~pyd~ 204 (373)
T COG5019 173 DTLTDD--ELAEFKER-----IREDLEQYNIPVFDPYDP 204 (373)
T ss_pred ccCCHH--HHHHHHHH-----HHHHHHHhCCceeCCCCc
Confidence 988775 77777777 89999999998773 444
No 125
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.72 E-value=7.7e-16 Score=112.82 Aligned_cols=162 Identities=23% Similarity=0.203 Sum_probs=98.0
Q ss_pred EEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCC
Q 036158 24 LVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDG 103 (225)
Q Consensus 24 v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (225)
++|++|+|||||+|+|++....... ...+.|.........+.....+.+|||||+.+...........+. .....
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~----~~~~~ 75 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVS-PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELAR----RVLER 75 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccC-CCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHH----HHHHh
Confidence 5899999999999999988754332 344455555555555533778999999999876543332222222 23446
Q ss_pred ccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEe
Q 036158 104 IHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLF 183 (225)
Q Consensus 104 ~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (225)
+|++++|+++..........+...... ...|+++|+||+|..... ........ .........+.+++.
T Consensus 76 ~d~il~v~~~~~~~~~~~~~~~~~~~~-----~~~~~ivv~nK~D~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~- 143 (163)
T cd00880 76 ADLILFVVDADLRADEEEEKLLELLRE-----RGKPVLLVLNKIDLLPEE--EEEELLEL----RLLILLLLLGLPVIA- 143 (163)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHh-----cCCeEEEEEEccccCChh--hHHHHHHH----HHhhcccccCCceEE-
Confidence 799999999985555544442222222 247999999999987653 33322110 001111111222322
Q ss_pred eCCCccccccHHHHHHHHHHHHHH
Q 036158 184 DNKTKDTAKRTEQVGKLLSLVNSV 207 (225)
Q Consensus 184 ~~~~~~~~~~~~~v~~l~~~i~~~ 207 (225)
.++.++.+++++++.+.+.
T Consensus 144 -----~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 144 -----VSALTGEGIDELREALIEA 162 (163)
T ss_pred -----EeeeccCCHHHHHHHHHhh
Confidence 2344557899999888654
No 126
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.71 E-value=3.9e-16 Score=115.63 Aligned_cols=155 Identities=14% Similarity=0.110 Sum_probs=91.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (225)
++|+++|.+|+|||||++++...... . .. +|.......+.. ....+.+|||||... +...+..
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~--~~--pt~g~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~~ 63 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-T--TI--PTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRH 63 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-c--cC--CCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHH
Confidence 47999999999999999999654432 1 11 222223334454 677899999999742 2233345
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158 100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
++.++|++|+|+|++++.+- ....+++.+..... ...|++++.||.|+.... ..++.... + . +....
T Consensus 64 ~~~~ad~~i~v~D~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~-----~-~-~~~~~ 132 (159)
T cd04150 64 YFQNTQGLIFVVDSNDRERI--GEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVTDK-----L-G-LHSLR 132 (159)
T ss_pred HhcCCCEEEEEEeCCCHHHH--HHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHHHH-----h-C-ccccC
Confidence 67788999999999743221 12223333333221 237999999999975432 22222111 0 0 00001
Q ss_pred CcEEEeeCCCccccccHHHHHHHHHHHH
Q 036158 178 NRCVLFDNKTKDTAKRTEQVGKLLSLVN 205 (225)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~ 205 (225)
.+... ..+.||+++.++++++++|.
T Consensus 133 ~~~~~---~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 133 NRNWY---IQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred CCCEE---EEEeeCCCCCCHHHHHHHHh
Confidence 11111 12456778899999998874
No 127
>CHL00071 tufA elongation factor Tu
Probab=99.71 E-value=4e-16 Score=131.99 Aligned_cols=142 Identities=18% Similarity=0.218 Sum_probs=97.1
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhCCcccc--------------ccCCCCCceeEEEEEEEEeeCCceEEEEeCCCC
Q 036158 14 SPSNGERNLVLVGRTGNGKSATANSILGKRAFK--------------SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79 (225)
Q Consensus 14 ~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (225)
.+.++.++|+++|++++|||||+|+|++..... ......+.|.......+.+ ++..+.|+||||+
T Consensus 7 ~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~~iDtPGh 85 (409)
T CHL00071 7 ERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET-ENRHYAHVDCPGH 85 (409)
T ss_pred cCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc-CCeEEEEEECCCh
Confidence 346788999999999999999999999753211 1112356677766666666 6778999999996
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc-EEEEEecCCCCCCCcccHH
Q 036158 80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLE 158 (225)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~vv~~k~D~~~~~~~~~~ 158 (225)
.++ ...+ ......+|++++|+|+.......+.+.+..+... ..| +++++||+|..... ...+
T Consensus 86 ~~~-------~~~~----~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~-----g~~~iIvvvNK~D~~~~~-~~~~ 148 (409)
T CHL00071 86 ADY-------VKNM----ITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV-----GVPNIVVFLNKEDQVDDE-ELLE 148 (409)
T ss_pred HHH-------HHHH----HHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc-----CCCEEEEEEEccCCCCHH-HHHH
Confidence 421 2222 2334467999999999877877787888776653 245 77899999986432 2233
Q ss_pred HHhhhcCCchHHHHHHHcCC
Q 036158 159 DYLGRECPKPLKEILQLCDN 178 (225)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~ 178 (225)
....+ +.+.++.++.
T Consensus 149 ~~~~~-----l~~~l~~~~~ 163 (409)
T CHL00071 149 LVELE-----VRELLSKYDF 163 (409)
T ss_pred HHHHH-----HHHHHHHhCC
Confidence 33333 6777776653
No 128
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.71 E-value=6.2e-16 Score=117.42 Aligned_cols=164 Identities=15% Similarity=0.129 Sum_probs=96.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEE-EEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCE-MQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
++|+++|.+|+|||||++++.+...... . ..|.... ...+..+++ ..+.+|||||.... ...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~---~-~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~-----------~~~ 65 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEE---Y-VPTVFENYVTNIQGPNGKIIELALWDTAGQEEY-----------DRL 65 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCC---C-CCeeeeeeEEEEEecCCcEEEEEEEECCCchhH-----------HHH
Confidence 4799999999999999999997764211 1 1222222 222333212 36899999995422 222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
.......+|++|+|+|.+++.+-++. .++..+... ....|+++|.||+|+.... ....... ....+++..
T Consensus 66 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~--~~~~~v~---~~~~~~~~~ 137 (187)
T cd04132 66 RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF---CPGTPIMLVGLKTDLRKDK--NLDRKVT---PAQAESVAK 137 (187)
T ss_pred HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh---CCCCCEEEEEeChhhhhCc--cccCCcC---HHHHHHHHH
Confidence 23356788999999999754333222 122333322 1247999999999975432 1111000 111344444
Q ss_pred HcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 175 LCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 175 ~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
..+. .+ ...|+..+.++++++..+.+.+....
T Consensus 138 ~~~~~~~------~e~Sa~~~~~v~~~f~~l~~~~~~~~ 170 (187)
T cd04132 138 KQGAFAY------LECSAKTMENVEEVFDTAIEEALKKE 170 (187)
T ss_pred HcCCcEE------EEccCCCCCCHHHHHHHHHHHHHhhh
Confidence 4443 22 24455677899999999987776653
No 129
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.71 E-value=7.2e-16 Score=120.03 Aligned_cols=160 Identities=14% Similarity=0.040 Sum_probs=97.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEE--EEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEM--QRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEI 93 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (225)
...++|+++|.+|+|||||+++++....... ...|..+.. ..+... ....+.+|||||...+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~----~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------- 75 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----------- 75 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCc----cCCccceeEEEEEEEECCeEEEEEEEECCCchhh-----------
Confidence 6678999999999999999999876553211 122222222 223221 2348999999997543
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 172 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~ 172 (225)
......++..+|++|+|+|.+++.+-.. ..+++.+.+.. ...|+++|.||+|+.... ...+ . + .+
T Consensus 76 ~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~~~--v~~~---~-----~-~~ 141 (219)
T PLN03071 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQ--VKAK---Q-----V-TF 141 (219)
T ss_pred hhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEEchhhhhcc--CCHH---H-----H-HH
Confidence 1222345668899999999985433222 22334444332 247999999999975321 1111 1 1 22
Q ss_pred HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
.+..+.+| | ..||+++.++++++++|.+.+.+.
T Consensus 142 ~~~~~~~~--~----e~SAk~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 142 HRKKNLQY--Y----EISAKSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred HHhcCCEE--E----EcCCCCCCCHHHHHHHHHHHHHcC
Confidence 22233332 2 346677899999999998777654
No 130
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.71 E-value=3.5e-16 Score=137.73 Aligned_cols=167 Identities=17% Similarity=0.230 Sum_probs=114.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCcccc-ccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFK-SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
+.|+++|+.++|||||+++|+|..... ......+.|.......+..+++..+.||||||+.+ +...+.
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~-----------fi~~m~ 69 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK-----------FLSNML 69 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH-----------HHHHHH
Confidence 358999999999999999999854211 12234577877766666665677899999999742 222222
Q ss_pred hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158 99 MTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 178 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (225)
.....+|++++|++++......+.+.+..+... + .++++||+||+|+.... .++....+ +++.+...+.
T Consensus 70 ~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~l-g---i~~iIVVlNKiDlv~~~--~~~~v~~e-----i~~~l~~~~~ 138 (614)
T PRK10512 70 AGVGGIDHALLVVACDDGVMAQTREHLAILQLT-G---NPMLTVALTKADRVDEA--RIAEVRRQ-----VKAVLREYGF 138 (614)
T ss_pred HHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHc-C---CCeEEEEEECCccCCHH--HHHHHHHH-----HHHHHHhcCC
Confidence 345578999999999877777787887766542 2 14568999999986432 44444444 5666655443
Q ss_pred cEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 179 RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
.. ....+.|+.++.++++|++.|.++....
T Consensus 139 ~~---~~ii~VSA~tG~gI~~L~~~L~~~~~~~ 168 (614)
T PRK10512 139 AE---AKLFVTAATEGRGIDALREHLLQLPERE 168 (614)
T ss_pred CC---CcEEEEeCCCCCCCHHHHHHHHHhhccc
Confidence 21 1223456677799999999998876553
No 131
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.71 E-value=2.8e-16 Score=119.61 Aligned_cols=165 Identities=9% Similarity=0.005 Sum_probs=97.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
....+|+++|++|+|||||++++.+..... ...|.......+.+ ++..+.++||||.... ...
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~-----~~~T~~~~~~~i~~-~~~~~~l~D~~G~~~~-----------~~~ 79 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQ-----HVPTLHPTSEELTI-GNIKFKTFDLGGHEQA-----------RRL 79 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcc-----cCCccCcceEEEEE-CCEEEEEEECCCCHHH-----------HHH
Confidence 456899999999999999999999866421 12233333445566 6788999999995421 222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCc-hH----
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPK-PL---- 169 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~-~~---- 169 (225)
+..+...+|++++|+|+.+.-+- .....++.+.+.. ....|++++.||+|..... ..++..+. ... ..
T Consensus 80 ~~~~~~~ad~iilV~D~~~~~s~--~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~--~~~~~~~~-~~~~~~~~~~ 154 (190)
T cd00879 80 WKDYFPEVDGIVFLVDAADPERF--QESKEELDSLLSDEELANVPFLILGNKIDLPGAV--SEEELRQA-LGLYGTTTGK 154 (190)
T ss_pred HHHHhccCCEEEEEEECCcHHHH--HHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCc--CHHHHHHH-hCcccccccc
Confidence 33455678999999999733111 1222334433322 1347999999999975432 22222111 000 00
Q ss_pred -HHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158 170 -KEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV 207 (225)
Q Consensus 170 -~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~ 207 (225)
..+.......+. ...+|+.++.++++++++|.+.
T Consensus 155 ~~~~~~~~~~~~~----~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 155 GVSLKVSGIRPIE----VFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cccccccCceeEE----EEEeEecCCCChHHHHHHHHhh
Confidence 000001111111 2356778889999999999764
No 132
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.71 E-value=2.9e-16 Score=116.04 Aligned_cols=155 Identities=13% Similarity=0.076 Sum_probs=91.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT 100 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (225)
+|+++|.+|+|||||++++........ ..|.......+.+ .+..+.+|||||...+ ...+..+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~-----------~~~~~~~ 63 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTT-----IPTIGFNVETVTY-KNLKFQVWDLGGQTSI-----------RPYWRCY 63 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCc-----CCccCcCeEEEEE-CCEEEEEEECCCCHHH-----------HHHHHHH
Confidence 589999999999999999976553211 1233333344555 6678999999997532 2233345
Q ss_pred CCCccEEEEEEeCCCCCCHH--HHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158 101 KDGIHAVLVVFSVRNRFSEE--EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 178 (225)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (225)
...+|++|+|+|++++.+.. ...+...++.. .....|+++|+||+|..... ...+.... +. ......
T Consensus 64 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~piiiv~nK~Dl~~~~--~~~~i~~~-----~~--~~~~~~ 132 (158)
T cd04151 64 YSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEE--ELKGAVLLVFANKQDMPGAL--SEAEISEK-----LG--LSELKD 132 (158)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhch--hhcCCcEEEEEeCCCCCCCC--CHHHHHHH-----hC--ccccCC
Confidence 56789999999997432111 12222222221 11247999999999976432 22222111 00 000011
Q ss_pred cEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158 179 RCVLFDNKTKDTAKRTEQVGKLLSLVNS 206 (225)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~v~~l~~~i~~ 206 (225)
... ...+.|+.++.+++++++.+.+
T Consensus 133 ~~~---~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 133 RTW---SIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred CcE---EEEEeeccCCCCHHHHHHHHhc
Confidence 101 1345677788999999998853
No 133
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.71 E-value=4.5e-16 Score=136.56 Aligned_cols=168 Identities=20% Similarity=0.232 Sum_probs=113.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCcccc-ccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFK-SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
++|+++|++++|||||+|+|++..... ......+.|.+.....+.+ ++..+.+|||||+.+ +...+.
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~-~~~~v~~iDtPGhe~-----------f~~~~~ 68 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL-PDYRLGFIDVPGHEK-----------FISNAI 68 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe-CCEEEEEEECCCHHH-----------HHHHHH
Confidence 469999999999999999999854211 1123456777777777777 668999999999642 233333
Q ss_pred hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158 99 MTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 178 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (225)
....++|++++|+|++++......+.+..+.. .+. +++++|+||+|..... .++....+ +++++...+.
T Consensus 69 ~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~-lgi---~~iIVVlNK~Dlv~~~--~~~~~~~e-----i~~~l~~~~~ 137 (581)
T TIGR00475 69 AGGGGIDAALLVVDADEGVMTQTGEHLAVLDL-LGI---PHTIVVITKADRVNEE--EIKRTEMF-----MKQILNSYIF 137 (581)
T ss_pred hhhccCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEECCCCCCHH--HHHHHHHH-----HHHHHHHhCC
Confidence 44567899999999987666666666665543 221 3499999999986432 33333333 5566655432
Q ss_pred cEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 179 RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
.- .....+.|+.++.+++++.+.+.++.....
T Consensus 138 ~~--~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~ 169 (581)
T TIGR00475 138 LK--NAKIFKTSAKTGQGIGELKKELKNLLESLD 169 (581)
T ss_pred CC--CCcEEEEeCCCCCCchhHHHHHHHHHHhCC
Confidence 10 011234466777899999999988877643
No 134
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.71 E-value=5.4e-16 Score=121.70 Aligned_cols=87 Identities=21% Similarity=0.296 Sum_probs=63.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT 100 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (225)
+|+++|.+|+|||||+|+|++.... ....+.+|..+....+.+ ++..+.+|||||+.+...........+ ...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~--v~~~~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~----l~~ 74 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE--VAAYEFTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAADGKGRGRQV----IAV 74 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc--ccCCCCccccceEEEEEE-CCeEEEEEECCCcccccccchhHHHHH----HHh
Confidence 6899999999999999999987642 223456666676666677 788999999999876543222222222 234
Q ss_pred CCCccEEEEEEeCC
Q 036158 101 KDGIHAVLVVFSVR 114 (225)
Q Consensus 101 ~~~~~~ii~v~~~~ 114 (225)
...+|++++|+|+.
T Consensus 75 ~~~ad~il~V~D~t 88 (233)
T cd01896 75 ARTADLILMVLDAT 88 (233)
T ss_pred hccCCEEEEEecCC
Confidence 66789999999986
No 135
>PTZ00369 Ras-like protein; Provisional
Probab=99.71 E-value=1.3e-15 Score=115.91 Aligned_cols=163 Identities=20% Similarity=0.156 Sum_probs=96.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
..++|+++|.+|+|||||++++.+....... .++........+.+ ++ ..+.+|||||..++. .
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~ 68 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEY---DPTIEDSYRKQCVI-DEETCLLDILDTAGQEEYS-----------A 68 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCc---CCchhhEEEEEEEE-CCEEEEEEEEeCCCCccch-----------h
Confidence 4589999999999999999999976642221 11111111223333 33 357889999976542 1
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
.+..+...+|++++|+|++++-+-.. ..+++.+...... ...|+++|.||+|..........+ ..+...
T Consensus 69 l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~~~~~i~~~~---------~~~~~~ 138 (189)
T PTZ00369 69 MRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDK-DRVPMILVGNKCDLDSERQVSTGE---------GQELAK 138 (189)
T ss_pred hHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccccccCHHH---------HHHHHH
Confidence 22235567899999999975433222 2333444333221 246899999999965432111111 222333
Q ss_pred HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
..+.++ ...|+.++.+++++++.+.+.+.+.
T Consensus 139 ~~~~~~------~e~Sak~~~gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 139 SFGIPF------LETSAKQRVNVDEAFYELVREIRKY 169 (189)
T ss_pred HhCCEE------EEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 334332 2345566789999999988766554
No 136
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.71 E-value=2.2e-15 Score=116.71 Aligned_cols=164 Identities=18% Similarity=0.144 Sum_probs=97.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
.++|+++|.+|+|||||+|++++...... ..++.+.+.....+.+.++ ..+.+|||||... +...
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~--~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~ 68 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEV--SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER-----------FRSI 68 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC--CCceeceEEEEEEEEECCCCEEEEEEEeCCcchh-----------HHHH
Confidence 47999999999999999999998764222 1222222332333333223 4789999999542 2222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
...++..+|++++|+|.+++-+-.. ..++..+.+.... ...|+++|.||+|+........+ . ..++.+.
T Consensus 69 ~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~~~~v~~~-~--------~~~~~~~ 138 (211)
T cd04111 69 TRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLESQRQVTRE-E--------AEKLAKD 138 (211)
T ss_pred HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEccccccccccCHH-H--------HHHHHHH
Confidence 2345667899999999974422222 1233333332221 23567889999997653211111 1 2334444
Q ss_pred cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
.+..++ ..|+.++.+++++++.|.+.+.++
T Consensus 139 ~~~~~~------e~Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 139 LGMKYI------ETSARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred hCCEEE------EEeCCCCCCHHHHHHHHHHHHHHH
Confidence 453332 345566789999999999877654
No 137
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.71 E-value=7.6e-16 Score=114.27 Aligned_cols=157 Identities=13% Similarity=0.135 Sum_probs=93.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
++|+++|.+|+|||||++.+++...... ..+..........+.. ++ ..+.+|||||.... ....
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~-----------~~~~ 66 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSS--HISTIGVDFKMKTIEV-DGIKVRIQIWDTAGQERY-----------QTIT 66 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHhH-----------HhhH
Confidence 3799999999999999999997664221 1122222233334444 33 36889999995422 2223
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
..+...+|++++|+|++++-+-.. ..+++.+.... ....|+++|.||.|+.+..... .+. ...+.+..
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~--~~~~~iilvgnK~Dl~~~~~v~-~~~--------~~~~~~~~ 135 (161)
T cd04117 67 KQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYA--PEGVQKILIGNKADEEQKRQVG-DEQ--------GNKLAKEY 135 (161)
T ss_pred HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECcccccccCCC-HHH--------HHHHHHHc
Confidence 345668899999999975422222 22333333322 1247999999999976443111 111 23334444
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV 207 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~ 207 (225)
+..+ ...|+..+.++++++..|.++
T Consensus 136 ~~~~------~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 136 GMDF------FETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred CCEE------EEEeCCCCCCHHHHHHHHHhh
Confidence 4333 245566678999999998764
No 138
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.70 E-value=1.1e-16 Score=126.19 Aligned_cols=166 Identities=18% Similarity=0.153 Sum_probs=117.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
....|+++|.+|+|||||+|+|...++ ....+..+|..++...+.+.+...+++.|.||+...+..+..+.-.+.+.+
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKp--kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHi 272 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKP--KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHI 272 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCC--cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHH
Confidence 346688999999999999999998886 445577888888888887744446999999999999888988888888888
Q ss_pred hhcCCCccEEEEEEeCCCC--CCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 98 GMTKDGIHAVLVVFSVRNR--FSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~--~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
..+ ..++||+|.... .++++ ..++..+..+-..-..+|.+||.||+|..+.. ++. +.++.
T Consensus 273 ER~----~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae----~~~--------l~~L~ 336 (366)
T KOG1489|consen 273 ERC----KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE----KNL--------LSSLA 336 (366)
T ss_pred Hhh----ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH----HHH--------HHHHH
Confidence 777 999999999733 24443 22223333221112448999999999976332 111 34444
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNS 206 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~ 206 (225)
+..... + ..+.||..+.++.+|+..+.+
T Consensus 337 ~~lq~~-~----V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 337 KRLQNP-H----VVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred HHcCCC-c----EEEeeeccccchHHHHHHHhh
Confidence 444433 1 123455666888998887754
No 139
>PLN03127 Elongation factor Tu; Provisional
Probab=99.70 E-value=6.1e-16 Score=131.69 Aligned_cols=171 Identities=17% Similarity=0.196 Sum_probs=110.4
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhCC------ccc------c--ccCCCCCceeEEEEEEEEeeCCceEEEEeCCCC
Q 036158 14 SPSNGERNLVLVGRTGNGKSATANSILGK------RAF------K--SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79 (225)
Q Consensus 14 ~~~~~~~~i~v~G~~g~GKSSlin~l~~~------~~~------~--~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (225)
+..+++++|+++|+.++|||||+++|++. ... + .....++.|.+.....++. ++..+.++||||+
T Consensus 56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh 134 (447)
T PLN03127 56 TRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGH 134 (447)
T ss_pred hcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCc
Confidence 33578899999999999999999999733 100 0 1122367788887777776 6778999999998
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc-EEEEEecCCCCCCCcccHH
Q 036158 80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLE 158 (225)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~vv~~k~D~~~~~~~~~~ 158 (225)
.++ ...+.. ....+|++++|+|+.......+.+.+..+... ..| +++++||+|..+.. ...+
T Consensus 135 ~~f-------~~~~~~----g~~~aD~allVVda~~g~~~qt~e~l~~~~~~-----gip~iIvviNKiDlv~~~-~~~~ 197 (447)
T PLN03127 135 ADY-------VKNMIT----GAAQMDGGILVVSAPDGPMPQTKEHILLARQV-----GVPSLVVFLNKVDVVDDE-ELLE 197 (447)
T ss_pred cch-------HHHHHH----HHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-----CCCeEEEEEEeeccCCHH-HHHH
Confidence 642 222222 22358999999999877777787888777653 256 57889999986432 1222
Q ss_pred HHhhhcCCchHHHHHHHcCC-----cEEEeeCCCcccccc-------HHHHHHHHHHHHHHHHH
Q 036158 159 DYLGRECPKPLKEILQLCDN-----RCVLFDNKTKDTAKR-------TEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-------~~~v~~l~~~i~~~~~~ 210 (225)
....+ +++++..++. ++...+.. ++.+ ...+.+|++.+.++++.
T Consensus 198 ~i~~~-----i~~~l~~~~~~~~~vpiip~Sa~---sa~~g~n~~~~~~~i~~Ll~~l~~~lp~ 253 (447)
T PLN03127 198 LVEME-----LRELLSFYKFPGDEIPIIRGSAL---SALQGTNDEIGKNAILKLMDAVDEYIPE 253 (447)
T ss_pred HHHHH-----HHHHHHHhCCCCCcceEEEeccc---eeecCCCcccccchHHHHHHHHHHhCCC
Confidence 22223 5666665443 22222211 1111 13478899999887653
No 140
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.70 E-value=1.4e-16 Score=117.93 Aligned_cols=147 Identities=18% Similarity=0.212 Sum_probs=88.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT 100 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (225)
+|+++|.+|+|||||+|+|.+..... ..|.. +.+ ... .+|||||+.... .... ..+...
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~------~~~~~-----v~~-~~~--~~iDtpG~~~~~---~~~~----~~~~~~ 61 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA------RKTQA-----VEF-NDK--GDIDTPGEYFSH---PRWY----HALITT 61 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC------ccceE-----EEE-CCC--CcccCCccccCC---HHHH----HHHHHH
Confidence 79999999999999999999765211 11222 222 222 279999986332 1122 222233
Q ss_pred CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcE
Q 036158 101 KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 180 (225)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (225)
...+|++++|+|++...+.... ++.+.. ...|+++++||+|.... ..+. +.+.+...+...
T Consensus 62 ~~~ad~il~v~d~~~~~s~~~~----~~~~~~---~~~~ii~v~nK~Dl~~~---~~~~---------~~~~~~~~~~~~ 122 (158)
T PRK15467 62 LQDVDMLIYVHGANDPESRLPA----GLLDIG---VSKRQIAVISKTDMPDA---DVAA---------TRKLLLETGFEE 122 (158)
T ss_pred HhcCCEEEEEEeCCCcccccCH----HHHhcc---CCCCeEEEEEccccCcc---cHHH---------HHHHHHHcCCCC
Confidence 5688999999999744332222 222221 13689999999997432 2221 233444444311
Q ss_pred EEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 181 VLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 181 ~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
.....|+.++.++++|++.+.+.+.+.
T Consensus 123 ----p~~~~Sa~~g~gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 123 ----PIFELNSHDPQSVQQLVDYLASLTKQE 149 (158)
T ss_pred ----CEEEEECCCccCHHHHHHHHHHhchhh
Confidence 222345567799999999999888553
No 141
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.70 E-value=5.8e-16 Score=121.70 Aligned_cols=135 Identities=21% Similarity=0.240 Sum_probs=91.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCcccccc----------------CCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKSK----------------AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA 84 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (225)
+|+++|+.|+|||||+++|+........ ....+.|.......+.+ ++..+.+|||||+.++.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTPG~~~f~- 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTPGHMDFI- 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCCCccchH-
Confidence 5899999999999999999864321110 11234455566677788 78899999999987642
Q ss_pred CcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhc
Q 036158 85 DSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE 164 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~ 164 (225)
..+. .+...+|++++|+|+.+........+++.+.+. ..|+++++||+|.... ...+.+.
T Consensus 79 ------~~~~----~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~-----~~P~iivvNK~D~~~a---~~~~~~~-- 138 (237)
T cd04168 79 ------AEVE----RSLSVLDGAILVISAVEGVQAQTRILWRLLRKL-----NIPTIIFVNKIDRAGA---DLEKVYQ-- 138 (237)
T ss_pred ------HHHH----HHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECccccCC---CHHHHHH--
Confidence 1222 233456999999999877776666666666542 3789999999997654 3344433
Q ss_pred CCchHHHHHHHcCCcEEEe
Q 036158 165 CPKPLKEILQLCDNRCVLF 183 (225)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~ 183 (225)
++.+.++.+..++
T Consensus 139 ------~i~~~~~~~~~~~ 151 (237)
T cd04168 139 ------EIKEKLSSDIVPM 151 (237)
T ss_pred ------HHHHHHCCCeEEE
Confidence 3444455554444
No 142
>PLN03110 Rab GTPase; Provisional
Probab=99.70 E-value=3.3e-15 Score=116.11 Aligned_cols=163 Identities=14% Similarity=0.109 Sum_probs=97.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
...++|+++|++|+|||||+++|++...... ..+..........+.+ ++ ..+.||||||... +.
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~--~~~t~g~~~~~~~v~~-~~~~~~l~l~Dt~G~~~-----------~~ 75 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLE--SKSTIGVEFATRTLQV-EGKTVKAQIWDTAGQER-----------YR 75 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeEEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HH
Confidence 3558999999999999999999998764322 1222222222334444 33 3789999999532 23
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
.....+...++++|+|+|..+..+... ..++..+..... ...|+++|.||+|+..... ..++. .+.+.
T Consensus 76 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~~~-~~~~~--------~~~l~ 144 (216)
T PLN03110 76 AITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD--SNIVIMMAGNKSDLNHLRS-VAEED--------GQALA 144 (216)
T ss_pred HHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC--CCCeEEEEEEChhcccccC-CCHHH--------HHHHH
Confidence 333445668899999999974432222 223344444322 2479999999999754321 11111 22333
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
...+..++ ..|+..+.+++++++.+.+.+.+
T Consensus 145 ~~~~~~~~------e~SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 145 EKEGLSFL------ETSALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred HHcCCEEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 33333322 33455668899999888766644
No 143
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.70 E-value=4.7e-16 Score=121.14 Aligned_cols=163 Identities=19% Similarity=0.148 Sum_probs=101.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccccccCC-------------CCCcee------------------------EEEEEEE
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKSKAG-------------SSGVTK------------------------TCEMQRT 63 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~-------------~~~~t~------------------------~~~~~~~ 63 (225)
+|+++|+.++|||||++.+....... ... ..+.|. ......+
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~-~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 79 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDN-GRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEIC 79 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCC-CCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceee
Confidence 58999999999999999998532211 000 011111 0001122
Q ss_pred EeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEE
Q 036158 64 MLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVV 143 (225)
Q Consensus 64 ~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv 143 (225)
+. .+..+.++||||+.++ .......+. ...+|++++|++++.+....+.+++.++.+. ..|+++|
T Consensus 80 ~~-~~~~i~liDtpG~~~~-------~~~~~~~~~--~~~~D~~llVvda~~g~~~~d~~~l~~l~~~-----~ip~ivv 144 (224)
T cd04165 80 EK-SSKLVTFIDLAGHERY-------LKTTLFGLT--GYAPDYAMLVVAANAGIIGMTKEHLGLALAL-----NIPVFVV 144 (224)
T ss_pred ee-CCcEEEEEECCCcHHH-------HHHHHHhhc--ccCCCEEEEEEECCCCCcHHHHHHHHHHHHc-----CCCEEEE
Confidence 33 5678999999997532 122222221 1368999999999878888888888888764 3789999
Q ss_pred EecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcE--------------------EEeeCCCccccccHHHHHHHHHH
Q 036158 144 FTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC--------------------VLFDNKTKDTAKRTEQVGKLLSL 203 (225)
Q Consensus 144 ~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~v~~l~~~ 203 (225)
+||+|+.... .+.....+ +++.+...+... -..-+....|+.++.++++|.+.
T Consensus 145 vNK~D~~~~~--~~~~~~~~-----l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~ 217 (224)
T cd04165 145 VTKIDLAPAN--ILQETLKD-----LKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAF 217 (224)
T ss_pred EECccccCHH--HHHHHHHH-----HHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHH
Confidence 9999986542 44444444 444444222110 00112334577888999999998
Q ss_pred HHH
Q 036158 204 VNS 206 (225)
Q Consensus 204 i~~ 206 (225)
|..
T Consensus 218 L~~ 220 (224)
T cd04165 218 LNL 220 (224)
T ss_pred HHh
Confidence 864
No 144
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.70 E-value=1.6e-15 Score=113.27 Aligned_cols=161 Identities=16% Similarity=0.077 Sum_probs=94.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
...++|+++|.+|+|||||++++++...... ..+..+.......+.+ ++ ..+.||||||.. .+.
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~i~D~~G~~-----------~~~ 68 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQ--LFHTIGVEFLNKDLEV-DGHFVTLQIWDTAGQE-----------RFR 68 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcC--cCCceeeEEEEEEEEE-CCeEEEEEEEeCCChH-----------HHH
Confidence 3568999999999999999999997664221 1122222222233344 33 367899999953 223
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 171 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (225)
.....+...+|++++|++.+++-+... ..++..+...... ....|+++|.||+|+.+.. ...++ +++
T Consensus 69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~---------~~~ 138 (170)
T cd04116 69 SLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQ-VSTEE---------AQA 138 (170)
T ss_pred HhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccc-cCHHH---------HHH
Confidence 333445678899999999874422222 1223333332211 1236999999999975321 11111 334
Q ss_pred HHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158 172 ILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNS 206 (225)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~ 206 (225)
+.+..+.. .. ...|+.++.++.++++.+.+
T Consensus 139 ~~~~~~~~-~~----~e~Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 139 WCRENGDY-PY----FETSAKDATNVAAAFEEAVR 168 (170)
T ss_pred HHHHCCCC-eE----EEEECCCCCCHHHHHHHHHh
Confidence 44443321 11 23455667899999888754
No 145
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.70 E-value=1.5e-15 Score=113.41 Aligned_cols=162 Identities=16% Similarity=0.070 Sum_probs=93.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
++|+++|.+|+|||||+++|++...... ..++...........+ ....+.+|||||..+... + ..
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~--------~---~~ 66 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTE---YVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDR--------L---RP 66 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC---CCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc--------c---ch
Confidence 4799999999999999999998774211 1121222222223331 233699999999875421 1 11
Q ss_pred hcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHh----hhcCCchHHHH
Q 036158 99 MTKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL----GRECPKPLKEI 172 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~----~~~~~~~~~~~ 172 (225)
.....+|++++|+|.+++.+... ..++..+..... ..|+++|.||+|+.... ...... .........+.
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~v~~~~~~~~ 141 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDDE--NTLKKLEKGKEPITPEEGEKL 141 (171)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhch--hhhhhcccCCCccCHHHHHHH
Confidence 23467899999999974322221 223444444322 48999999999987654 111000 00000112333
Q ss_pred HHHcCC-cEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158 173 LQLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNS 206 (225)
Q Consensus 173 ~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~ 206 (225)
....+. .+ ...|+.++.+++++++.|.+
T Consensus 142 ~~~~~~~~~------~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 142 AKEIGAIGY------MECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HHHhCCeEE------EEeecCCCCCHHHHHHHHhh
Confidence 444343 22 23345566899999988754
No 146
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.69 E-value=3e-15 Score=110.88 Aligned_cols=160 Identities=16% Similarity=0.130 Sum_probs=93.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
++|+++|.+|+|||||+++++....... ..+++........... ....+.+|||||..+. .....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----------~~~~~ 66 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVED---YEPTKADSYRKKVVLDGEDVQLNILDTAGQEDY-----------AAIRD 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccc---cCCcchhhEEEEEEECCEEEEEEEEECCChhhh-----------hHHHH
Confidence 4799999999999999999997664221 1122222112222331 2246899999996533 12222
Q ss_pred hcCCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158 99 MTKDGIHAVLVVFSVRNRFSEE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
.....+|++++|++..++-+-. -...+..+..... ....|+++|+||+|..........+ ...+...++
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~~~~~~~~~---------~~~~~~~~~ 136 (164)
T cd04139 67 NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLEDKRQVSSEE---------AANLARQWG 136 (164)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEccccccccccCHHH---------HHHHHHHhC
Confidence 3455679999999986332111 1223333333211 2348999999999986522111111 233444444
Q ss_pred CcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
.++ ...|+.++.+++++++.+.+.+.
T Consensus 137 ~~~------~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 137 VPY------VETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred CeE------EEeeCCCCCCHHHHHHHHHHHHH
Confidence 433 34455667999999999987654
No 147
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.69 E-value=2e-15 Score=117.66 Aligned_cols=162 Identities=19% Similarity=0.151 Sum_probs=94.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
++|+++|.+|+|||||++++++.........+.. ..+.....+.+. ....+.+|||||... ... .
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~-~~~~~~~~i~~~~~~~~l~i~Dt~G~~~------~~~----~--- 66 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASG-DDDTYERTVSVDGEESTLVVIDHWEQEM------WTE----D--- 66 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCc-cccceEEEEEECCEEEEEEEEeCCCcch------HHH----h---
Confidence 4799999999999999999976553211111111 112222223331 234789999999751 111 1
Q ss_pred hcCC-CccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 99 MTKD-GIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 99 ~~~~-~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
.+.. .+|++++|+|++++-+-.. .+++..+.+.. .....|+++|.||+|+........++ .+++....
T Consensus 67 ~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~-~~~~~piilV~NK~Dl~~~~~v~~~~---------~~~~a~~~ 136 (221)
T cd04148 67 SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNR-QLEDRPIILVGNKSDLARSREVSVQE---------GRACAVVF 136 (221)
T ss_pred HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhccccceecHHH---------HHHHHHHc
Confidence 1223 7899999999975432221 22333343321 11347999999999976543111111 12233333
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
+..++ ..|+..+.+++++++.+.+.+...
T Consensus 137 ~~~~~------e~SA~~~~gv~~l~~~l~~~~~~~ 165 (221)
T cd04148 137 DCKFI------ETSAGLQHNVDELLEGIVRQIRLR 165 (221)
T ss_pred CCeEE------EecCCCCCCHHHHHHHHHHHHHhh
Confidence 33322 346667789999999999887643
No 148
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.69 E-value=1.1e-15 Score=112.87 Aligned_cols=154 Identities=12% Similarity=0.062 Sum_probs=90.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT 100 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (225)
+|+++|.+|+|||||++++++.... ....|.......+.+ .+..+.+|||||.... ...+...
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-----~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-----------~~~~~~~ 63 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-----TTIPTIGFNVETVEY-KNVSFTVWDVGGQDKI-----------RPLWKHY 63 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-----CCCCCcCcceEEEEE-CCEEEEEEECCCChhh-----------HHHHHHH
Confidence 5899999999999999999988731 112233333444555 6778999999997532 1222334
Q ss_pred CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158 101 KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 178 (225)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (225)
...+|++++|+|+..+-+.. ....++...+.. ....|++++.||+|..... ..++..+. +.... ...
T Consensus 64 ~~~~~~~i~v~D~~~~~~~~--~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~-----~~~~~--~~~ 132 (158)
T cd00878 64 YENTNGIIFVVDSSDRERIE--EAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEK-----LGLEK--ILG 132 (158)
T ss_pred hccCCEEEEEEECCCHHHHH--HHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHh-----hChhh--ccC
Confidence 45679999999997431111 122222222211 1247999999999987543 23332222 11110 111
Q ss_pred cEEEeeCCCccccccHHHHHHHHHHHH
Q 036158 179 RCVLFDNKTKDTAKRTEQVGKLLSLVN 205 (225)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~v~~l~~~i~ 205 (225)
.... ....|+.++.+++++++.|.
T Consensus 133 ~~~~---~~~~Sa~~~~gv~~~~~~l~ 156 (158)
T cd00878 133 RRWH---IQPCSAVTGDGLDEGLDWLL 156 (158)
T ss_pred CcEE---EEEeeCCCCCCHHHHHHHHh
Confidence 1111 12335566789999988875
No 149
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=6e-16 Score=125.52 Aligned_cols=156 Identities=21% Similarity=0.274 Sum_probs=111.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccc-----cCCCCCceeEEEEEEEEeeCC---ceEEEEeCCCCCCCCCCcHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKS-----KAGSSGVTKTCEMQRTMLKDG---QVVNVIDTPGLFDSSADSEFV 89 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~-----~~~~~~~t~~~~~~~~~~~~~---~~~~liDtPG~~~~~~~~~~~ 89 (225)
-.+++.++|.+|.|||||||+|++...... ....+..|.......+.+.++ .+++++||||++|.-.+. .-
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns-~~ 98 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNS-NC 98 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccc-cc
Confidence 358999999999999999999998754322 111222344555555554333 279999999999875432 22
Q ss_pred HHHHHHHHh-----------------hcCCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158 90 SKEIVKCIG-----------------MTKDGIHAVLVVFSV-RNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELE 151 (225)
Q Consensus 90 ~~~~~~~~~-----------------~~~~~~~~ii~v~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~ 151 (225)
++-+..++. ....++|+++|.++. .+++.+-|.+.++.+... .+++.|+.|+|.+.
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~------vNiIPVI~KaD~lT 172 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKK------VNLIPVIAKADTLT 172 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhcc------ccccceeeccccCC
Confidence 333333221 123478999999965 457999999999888875 79999999999887
Q ss_pred CCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCC
Q 036158 152 DNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKT 187 (225)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (225)
.. .+..+... +.+.++.++++++.|....
T Consensus 173 ~~--El~~~K~~-----I~~~i~~~nI~vf~fp~~~ 201 (366)
T KOG2655|consen 173 KD--ELNQFKKR-----IRQDIEEHNIKVFDFPTDE 201 (366)
T ss_pred HH--HHHHHHHH-----HHHHHHHcCcceecCCCCc
Confidence 75 77777666 8889999999888776553
No 150
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.69 E-value=4.6e-15 Score=110.65 Aligned_cols=160 Identities=15% Similarity=0.099 Sum_probs=93.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
...+|+++|.+|+|||||++++.+...... ..++.+.......+.+ .+ ..+.+|||||.... ..
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~-----------~~ 71 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPG--QGATIGVDFMIKTVEI-KGEKIKLQIWDTAGQERF-----------RS 71 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHHH-----------HH
Confidence 458999999999999999999986553211 1222223333334444 44 35788999996422 22
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
........+|++++|+|..+..+... ..++..+...... ..|+++|.||+|..... .+.... .+.+.+
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~~~i~v~NK~D~~~~~--~i~~~~-------~~~~~~ 140 (169)
T cd04114 72 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANN--KVITILVGNKIDLAERR--EVSQQR-------AEEFSD 140 (169)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccccc--ccCHHH-------HHHHHH
Confidence 22334567899999999874322221 2233334443322 37889999999975432 111110 111222
Q ss_pred HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158 175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~ 208 (225)
.....+ ...|+.++.+++++++.|.+.+
T Consensus 141 ~~~~~~------~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 141 AQDMYY------LETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred HcCCeE------EEeeCCCCCCHHHHHHHHHHHh
Confidence 222222 2445566789999999987653
No 151
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.69 E-value=8.1e-16 Score=122.97 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=85.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccc----------------cccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAF----------------KSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA 84 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~----------------~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (225)
+|+++|++|+|||||+|+|+..... .......+.|.......+.| ++..++++||||+.++.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~df~- 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVDFT- 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHHHH-
Confidence 5899999999999999999742211 01122456788888888898 88999999999986531
Q ss_pred CcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158 85 DSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED 152 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~ 152 (225)
. .+..+...+|++++|+|+.......+...++.+.+. ..|+++++||+|....
T Consensus 79 ------~----~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~-----~~p~ivviNK~D~~~a 131 (270)
T cd01886 79 ------I----EVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRY-----NVPRIAFVNKMDRTGA 131 (270)
T ss_pred ------H----HHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence 2 223344566999999999877777777777766553 3789999999997654
No 152
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.69 E-value=2e-15 Score=112.01 Aligned_cols=157 Identities=15% Similarity=0.157 Sum_probs=93.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
++|+++|.+|+|||||++++........ ..++........+.. ++. .+.||||||...+.. .+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~-----------~~ 66 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEK---YDPTIEDFYRKEIEV-DSSPSVLEILDTAGTEQFAS-----------MR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC---CCCchhheEEEEEEE-CCEEEEEEEEECCCcccccc-----------hH
Confidence 6899999999999999999987654322 112222233334444 343 577899999754421 12
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
..++..+|++++|+|..++-+-.+ ..++..+..... ....|+++|.||+|+.........+ ...+.+..
T Consensus 67 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 136 (163)
T cd04176 67 DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLESEREVSSAE---------GRALAEEW 136 (163)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhcCccCHHH---------HHHHHHHh
Confidence 234557899999999975432222 233444444321 1347999999999975432111111 12222333
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV 207 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~ 207 (225)
+..+ .+.|+.++.++++++..+.+.
T Consensus 137 ~~~~------~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 137 GCPF------METSAKSKTMVNELFAEIVRQ 161 (163)
T ss_pred CCEE------EEecCCCCCCHHHHHHHHHHh
Confidence 3322 244566778999999888653
No 153
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.69 E-value=1.2e-15 Score=131.57 Aligned_cols=165 Identities=19% Similarity=0.263 Sum_probs=117.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA--DSEFVSKEIVK 95 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~ 95 (225)
+..+|+++|.+|+||||++|+|+|.+. ....-++.|.+.....+.. .+..+.++|+||.++... .++++.+.+
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q--~VgNwpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~S~DE~Var~~-- 76 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQ--KVGNWPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAYSEDEKVARDF-- 76 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCc--eecCCCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCCCchHHHHHHH--
Confidence 346799999999999999999999986 4455789999999988888 788899999999997553 223333322
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
+ ...++|+++-|+|+. .+ ++.+.-.++- + +...|+++++|++|..+... ..-...++-+.
T Consensus 77 -l--l~~~~D~ivnVvDAt-nL---eRnLyltlQL-l--E~g~p~ilaLNm~D~A~~~G----------i~ID~~~L~~~ 136 (653)
T COG0370 77 -L--LEGKPDLIVNVVDAT-NL---ERNLYLTLQL-L--ELGIPMILALNMIDEAKKRG----------IRIDIEKLSKL 136 (653)
T ss_pred -H--hcCCCCEEEEEcccc-hH---HHHHHHHHHH-H--HcCCCeEEEeccHhhHHhcC----------CcccHHHHHHH
Confidence 2 255889999999997 43 3333222221 1 12479999999999765541 22223445555
Q ss_pred cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158 176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG 213 (225)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~ 213 (225)
.|.++.. .+|.++.++++|++++.++..++..
T Consensus 137 LGvPVv~------tvA~~g~G~~~l~~~i~~~~~~~~~ 168 (653)
T COG0370 137 LGVPVVP------TVAKRGEGLEELKRAIIELAESKTT 168 (653)
T ss_pred hCCCEEE------EEeecCCCHHHHHHHHHHhcccccc
Confidence 5665543 4455678999999999888877764
No 154
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.69 E-value=9.6e-16 Score=119.06 Aligned_cols=113 Identities=21% Similarity=0.103 Sum_probs=73.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (225)
++|+++|.+|+|||||+++++....... ..|.........+ ....+.||||||...+. .....
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~-----~~Tig~~~~~~~~-~~~~l~iwDt~G~e~~~-----------~l~~~ 63 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDT-----VSTVGGAFYLKQW-GPYNISIWDTAGREQFH-----------GLGSM 63 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCC-----CCccceEEEEEEe-eEEEEEEEeCCCcccch-----------hhHHH
Confidence 4799999999999999999998764211 2233333333444 45679999999975431 11223
Q ss_pred cCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158 100 TKDGIHAVLVVFSVRNRFSEEEG-AAIHILESLFGKKISDYMIVVFTGGDELE 151 (225)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~vv~~k~D~~~ 151 (225)
++..+|++|+|+|+.++.+-... ..+..+.+... ...|+++|.||+|+..
T Consensus 64 ~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~--~~~piIlVgNK~DL~~ 114 (220)
T cd04126 64 YCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTAN--EDCLFAVVGNKLDLTE 114 (220)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence 46688999999999854333332 22333333221 2368999999999865
No 155
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.69 E-value=4e-15 Score=111.28 Aligned_cols=163 Identities=11% Similarity=0.009 Sum_probs=96.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
.+.++|+++|.+|+|||||++++++...... ...+..........+.+ ++ ..+.+|||+|...+..
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~-~~~~T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~---------- 69 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLN-AYSPTIKPRYAVNTVEV-YGQEKYLILREVGEDEVAIL---------- 69 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcc-cCCCccCcceEEEEEEE-CCeEEEEEEEecCCcccccc----------
Confidence 3568999999999999999999998764201 11222222222233444 34 4688999999764321
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
....++..+|++++|+|++++. ......+++... ......|+++|.||+|+.+..... . ....++.+
T Consensus 70 -~~~~~~~~~d~~llv~d~~~~~--s~~~~~~~~~~~-~~~~~~p~iiv~NK~Dl~~~~~~~----~-----~~~~~~~~ 136 (169)
T cd01892 70 -LNDAELAACDVACLVYDSSDPK--SFSYCAEVYKKY-FMLGEIPCLFVAAKADLDEQQQRY----E-----VQPDEFCR 136 (169)
T ss_pred -cchhhhhcCCEEEEEEeCCCHH--HHHHHHHHHHHh-ccCCCCeEEEEEEccccccccccc----c-----cCHHHHHH
Confidence 1122356889999999997432 222233344332 111247999999999975432100 0 01233333
Q ss_pred HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
..+.. .....|+..+.+++++++.+.+++.
T Consensus 137 ~~~~~-----~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 137 KLGLP-----PPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred HcCCC-----CCEEEEeccCccHHHHHHHHHHHhh
Confidence 33321 1134466677899999999987764
No 156
>PRK12735 elongation factor Tu; Reviewed
Probab=99.68 E-value=1.4e-15 Score=128.13 Aligned_cols=167 Identities=19% Similarity=0.222 Sum_probs=106.6
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCcc------c--------cccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCC
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRA------F--------KSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~------~--------~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (225)
.++.++|+++|+.++|||||+++|++... + .......+.|.......+.. ++..+.|+||||+.+
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-ANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-CCcEEEEEECCCHHH
Confidence 46789999999999999999999996210 0 01112456777776666665 677899999999742
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc-EEEEEecCCCCCCCcccHHHH
Q 036158 82 SSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLEDY 160 (225)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~vv~~k~D~~~~~~~~~~~~ 160 (225)
+...+......+|++++|+|+.......+.+.+..+... ..| +++++||+|..... ...+..
T Consensus 88 -----------f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~-----gi~~iivvvNK~Dl~~~~-~~~~~~ 150 (396)
T PRK12735 88 -----------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-----GVPYIVVFLNKCDMVDDE-ELLELV 150 (396)
T ss_pred -----------HHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHc-----CCCeEEEEEEecCCcchH-HHHHHH
Confidence 222233444578999999999866666666666665542 245 45689999986422 122333
Q ss_pred hhhcCCchHHHHHHHcCCc---EEEeeCCCccccccH----------HHHHHHHHHHHHHHH
Q 036158 161 LGRECPKPLKEILQLCDNR---CVLFDNKTKDTAKRT----------EQVGKLLSLVNSVIV 209 (225)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----------~~v~~l~~~i~~~~~ 209 (225)
..+ ++.+++.++.. +..+ +.|+.++ .++.+|++.|.+.++
T Consensus 151 ~~e-----i~~~l~~~~~~~~~~~ii----~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 151 EME-----VRELLSKYDFPGDDTPII----RGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHH-----HHHHHHHcCCCcCceeEE----ecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 233 66667666531 2222 1222222 367899999988764
No 157
>PRK12736 elongation factor Tu; Reviewed
Probab=99.68 E-value=1.4e-15 Score=128.14 Aligned_cols=173 Identities=17% Similarity=0.170 Sum_probs=110.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccc--------------cccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCC
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAF--------------KSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (225)
.+++++|+++|+.++|||||+++|++.... .......+.|.......+.. ++..+.|+||||+.+
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCPGHAD 87 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECCCHHH
Confidence 577899999999999999999999863210 01112456777776666655 667899999999642
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc-EEEEEecCCCCCCCcccHHHH
Q 036158 82 SSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLEDY 160 (225)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~vv~~k~D~~~~~~~~~~~~ 160 (225)
+ ...+......+|++++|+|+.+.....+.+.+..+... ..| +++++||+|..... ...+..
T Consensus 88 f-----------~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~-----g~~~~IvviNK~D~~~~~-~~~~~i 150 (394)
T PRK12736 88 Y-----------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV-----GVPYLVVFLNKVDLVDDE-ELLELV 150 (394)
T ss_pred H-----------HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-----CCCEEEEEEEecCCcchH-HHHHHH
Confidence 2 12222233477999999999877777777777776553 245 67899999976332 122222
Q ss_pred hhhcCCchHHHHHHHcCC-----cEEEeeCCCcc--ccccHHHHHHHHHHHHHHHHHc
Q 036158 161 LGRECPKPLKEILQLCDN-----RCVLFDNKTKD--TAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
..+ +++.+...+. +++..+..... ...-..++.+|++.+.+.++..
T Consensus 151 ~~~-----i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~ 203 (394)
T PRK12736 151 EME-----VRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTP 203 (394)
T ss_pred HHH-----HHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCC
Confidence 223 6666666653 23333322110 0001136789999998877543
No 158
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.68 E-value=1.2e-15 Score=135.61 Aligned_cols=162 Identities=15% Similarity=0.192 Sum_probs=105.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee---CCceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK---DGQVVNVIDTPGLFDSSADSEFVSKEI 93 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (225)
...++|+|+|++|+|||||+++|.+...... ...+.|.....+.+.+. .+..++||||||+.. +
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~--e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~-----------F 308 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQK--EAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA-----------F 308 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccc--cCCccccccceEEEEEEecCCceEEEEEECCcHHH-----------H
Confidence 4668999999999999999999997765322 23345555444454442 347899999999743 2
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH--
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE-- 171 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~-- 171 (225)
...+......+|++|+|++++++......+.+..+.. ...|+++++||+|.... ..++..++ +..
T Consensus 309 ~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~-----~~iPiIVViNKiDl~~~---~~e~v~~e-----L~~~~ 375 (742)
T CHL00189 309 SSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQA-----ANVPIIVAINKIDKANA---NTERIKQQ-----LAKYN 375 (742)
T ss_pred HHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHh-----cCceEEEEEECCCcccc---CHHHHHHH-----HHHhc
Confidence 2333334557799999999987766666666655543 23799999999997653 22222222 111
Q ss_pred -HHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158 172 -ILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 172 -~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~ 208 (225)
+.+.++..+. ..+.||.++.++++|++.|..+.
T Consensus 376 ll~e~~g~~vp----vv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 376 LIPEKWGGDTP----MIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred cchHhhCCCce----EEEEECCCCCCHHHHHHhhhhhh
Confidence 1122222111 23456677899999999987654
No 159
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.68 E-value=3.1e-15 Score=110.24 Aligned_cols=156 Identities=15% Similarity=0.152 Sum_probs=92.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKD--GQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
+|+++|++|+|||||++++++... ... ...++.......... . ...+.+||+||.... .....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~-----------~~~~~ 65 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEE--YDPTIEDSYRKTIVV-DGETYTLDILDTAGQEEF-----------SAMRD 65 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcC--cCCChhHeEEEEEEE-CCEEEEEEEEECCChHHH-----------HHHHH
Confidence 589999999999999999997763 221 222222333333444 3 246889999996532 12222
Q ss_pred hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158 99 MTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
.....+|++++|++.++..+..+ ..++..+..... ....|++++.||+|.........++ ..+.....+
T Consensus 66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~---------~~~~~~~~~ 135 (160)
T cd00876 66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKD-DEDIPIVLVGNKCDLENERQVSKEE---------GKALAKEWG 135 (160)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCcccccceecHHH---------HHHHHHHcC
Confidence 34456799999999874322222 233334443322 1248999999999987633111111 333444444
Q ss_pred CcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158 178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSV 207 (225)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~ 207 (225)
.+++ ..|+..+.+++++++.|.+.
T Consensus 136 ~~~~------~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 136 CPFI------ETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CcEE------EeccCCCCCHHHHHHHHHhh
Confidence 3333 33445568999999988653
No 160
>PLN03108 Rab family protein; Provisional
Probab=99.68 E-value=6.1e-15 Score=114.16 Aligned_cols=161 Identities=14% Similarity=0.100 Sum_probs=92.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
..++|+|+|++|+|||||+|++++....... .+..........+.+ ++ ..+.+|||||... +..
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~--~~ti~~~~~~~~i~~-~~~~i~l~l~Dt~G~~~-----------~~~ 70 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--DLTIGVEFGARMITI-DNKPIKLQIWDTAGQES-----------FRS 70 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCCccceEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHH
Confidence 3489999999999999999999977643221 112222222223344 33 3688999999542 122
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
.....+..+|++++|+|+.+.-+... ..++..+..... ...|+++|.||+|+........++ ..++.+
T Consensus 71 ~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~---------~~~~~~ 139 (210)
T PLN03108 71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTEE---------GEQFAK 139 (210)
T ss_pred HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCccccCCCHHH---------HHHHHH
Confidence 22334557899999999974322222 123333333221 247999999999976432112111 223333
Q ss_pred HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
..+..++ ..|+.++.+++++++.+.+.+.
T Consensus 140 ~~~~~~~------e~Sa~~~~~v~e~f~~l~~~~~ 168 (210)
T PLN03108 140 EHGLIFM------EASAKTAQNVEEAFIKTAAKIY 168 (210)
T ss_pred HcCCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 3343322 3344556889998876665443
No 161
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.68 E-value=1.3e-15 Score=111.91 Aligned_cols=155 Identities=17% Similarity=0.189 Sum_probs=90.1
Q ss_pred EEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcC
Q 036158 22 LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTK 101 (225)
Q Consensus 22 i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~ 101 (225)
|+++|++|+|||||+|+|.+...... ...|.......... ++..+.+|||||... +...+..+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~----~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~-----------~~~~~~~~~ 65 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSED----TIPTVGFNMRKVTK-GNVTLKVWDLGGQPR-----------FRSMWERYC 65 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcC----ccCCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHHH
Confidence 79999999999999999998764221 11232333334444 567899999999642 222333445
Q ss_pred CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158 102 DGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 179 (225)
Q Consensus 102 ~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (225)
..+|++++|+|+.+..+ ......++...... ....|+++|+||+|..... ...+.... + .+.......
T Consensus 66 ~~~d~ii~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~--~~~~~~~~-----~-~~~~~~~~~ 135 (159)
T cd04159 66 RGVNAIVYVVDAADRTA--LEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL--SVDELIEQ-----M-NLKSITDRE 135 (159)
T ss_pred hcCCEEEEEEECCCHHH--HHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc--CHHHHHHH-----h-CcccccCCc
Confidence 67899999999873211 11122233332221 1236999999999976543 22222111 0 000000111
Q ss_pred EEEeeCCCccccccHHHHHHHHHHHHH
Q 036158 180 CVLFDNKTKDTAKRTEQVGKLLSLVNS 206 (225)
Q Consensus 180 ~~~~~~~~~~~~~~~~~v~~l~~~i~~ 206 (225)
+.. ...|+.++.+++++++.|.+
T Consensus 136 ~~~----~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 136 VSC----YSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred eEE----EEEEeccCCChHHHHHHHhh
Confidence 111 23456677899999998865
No 162
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.68 E-value=7.8e-16 Score=120.87 Aligned_cols=184 Identities=16% Similarity=0.161 Sum_probs=115.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCC-CcHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA-DSEFVSKEIVK 95 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~-~~~~~~~~~~~ 95 (225)
-..++|+|+|.+|+|||||.|.+.|.+++.++. ...+|+......+.- +...++|+||||+..... ........+.+
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~-K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSR-KVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccc-cccceeeeeeEEEec-CceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 346899999999999999999999999887743 334444443333443 777999999999986542 22233333444
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCch-------
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKP------- 168 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~------- 168 (225)
....+...+|.++.|+|+.+.-.....+.+..+.++. ..|-++|.||.|.++.....++ ......+..
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys----~ips~lvmnkid~~k~k~~Ll~-l~~~Lt~g~l~~~kl~ 222 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYS----KIPSILVMNKIDKLKQKRLLLN-LKDLLTNGELAKLKLE 222 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHh----cCCceeeccchhcchhhhHHhh-hHHhccccccchhhhh
Confidence 4445667889999999997444444556677776653 2688999999998765311111 111111111
Q ss_pred HHHHHHH----------cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 169 LKEILQL----------CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 169 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
+++-... || +.-|......|+..+.++++|.+++..-.+
T Consensus 223 v~~~f~~~p~~~~~~~~~g--wshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 223 VQEKFTDVPSDEKWRTICG--WSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred HHHHhccCCcccccccccC--cccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 1111111 11 222334445677788999999999965443
No 163
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.68 E-value=3.9e-15 Score=114.19 Aligned_cols=160 Identities=18% Similarity=0.163 Sum_probs=94.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
+|+++|.+|+|||||++++++...... ...++.......+.+ .+ ..+.+|||||...+. ....
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~-----------~~~~ 65 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPK---YRRTVEEMHRKEYEV-GGVSLTLDILDTSGSYSFP-----------AMRK 65 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcc---CCCchhhheeEEEEE-CCEEEEEEEEECCCchhhh-----------HHHH
Confidence 589999999999999999998764221 112222222233444 34 478899999975431 1222
Q ss_pred hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH-Hc
Q 036158 99 MTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ-LC 176 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 176 (225)
.+...+|++|+|+|+.+..+... ..++..+.+... ....|+++|.||+|..... ..+.. .. ..+... .+
T Consensus 66 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~-~~v~~-~~------~~~~~~~~~ 136 (198)
T cd04147 66 LSIQNSDAFALVYAVDDPESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLEEE-RQVPA-KD------ALSTVELDW 136 (198)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEcccccccc-ccccH-HH------HHHHHHhhc
Confidence 35668899999999974322222 222333333322 1247999999999976532 11110 00 111111 22
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
+..++ ..|+.++.+++++++.+.+.+..
T Consensus 137 ~~~~~------~~Sa~~g~gv~~l~~~l~~~~~~ 164 (198)
T cd04147 137 NCGFV------ETSAKDNENVLEVFKELLRQANL 164 (198)
T ss_pred CCcEE------EecCCCCCCHHHHHHHHHHHhhc
Confidence 22222 34667779999999999876653
No 164
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.68 E-value=7.7e-16 Score=115.82 Aligned_cols=161 Identities=17% Similarity=0.088 Sum_probs=93.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEE-EEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTC-EMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
++|+++|.+|+|||||++++...... .. . .+|... ....+.+ ++ ..+.||||||...+. ..
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~-~~--~-~pt~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~ 65 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP-SE--Y-VPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYD-----------RL 65 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CC--C-CCceeeeeEEEEEE-CCEEEEEEEEECCCccchh-----------hh
Confidence 68999999999999999999976531 11 1 122222 1223444 44 468899999976431 12
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcC-----CchH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGREC-----PKPL 169 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~-----~~~~ 169 (225)
...++..+|++|+|+|.+++.+-... .++..+.... ...|+++|.||.|+.... ...+.+.... .+..
T Consensus 66 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~~~--~~~~~l~~~~~~~v~~~~~ 140 (175)
T cd01874 66 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC---PKTPFLLVGTQIDLRDDP--STIEKLAKNKQKPITPETG 140 (175)
T ss_pred hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEECHhhhhCh--hhHHHhhhccCCCcCHHHH
Confidence 23456688999999999754333322 2334444322 247999999999975432 1111111100 0112
Q ss_pred HHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158 170 KEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNS 206 (225)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~ 206 (225)
+++.+..+ .+.+| ..||.++.+++++++.+.+
T Consensus 141 ~~~a~~~~-~~~~~----e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 141 EKLARDLK-AVKYV----ECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred HHHHHHhC-CcEEE----EecCCCCCCHHHHHHHHHH
Confidence 22332222 12222 4456677999999988765
No 165
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.68 E-value=1.6e-15 Score=113.69 Aligned_cols=164 Identities=16% Similarity=0.089 Sum_probs=94.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
++|+++|.+|+|||||++++.+...... ..++........+.. ++. .+.+|||||..++.. ..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------~~ 65 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEE---YVPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDR-----------LR 65 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC---CCCceeeeeEEEEEE-CCEEEEEEEEeCCCcccccc-----------cc
Confidence 4799999999999999999997663211 111122222223344 333 477999999765421 11
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHh---hhcC-CchHHH
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL---GREC-PKPLKE 171 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~---~~~~-~~~~~~ 171 (225)
......+|++++|++..++-+.... .++..+... ....|+++|.||+|+.... ....... .... ....+.
T Consensus 66 ~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~---~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~ 141 (174)
T cd04135 66 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY---APNVPYLLVGTQIDLRDDP-KTLARLNDMKEKPVTVEQGQK 141 (174)
T ss_pred cccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh---CCCCCEEEEeEchhhhcCh-hhHHHHhhccCCCCCHHHHHH
Confidence 2356688999999998744332221 234444433 2347999999999975432 1111110 0000 011223
Q ss_pred HHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158 172 ILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV 207 (225)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~ 207 (225)
..+..+... + ...|+.++.+++++++.+.+.
T Consensus 142 ~~~~~~~~~-~----~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 142 LAKEIGAHC-Y----VECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred HHHHcCCCE-E----EEecCCcCCCHHHHHHHHHHH
Confidence 333333211 1 245667779999999888654
No 166
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.68 E-value=2.4e-15 Score=113.15 Aligned_cols=162 Identities=15% Similarity=0.128 Sum_probs=106.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
.....+|+++|..||||||+++.|....... ..+|.......+.+ .+..+.+||.+|.. .++.
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~i~~-~~~~~~~~d~gG~~-----------~~~~ 73 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEEIKY-KGYSLTIWDLGGQE-----------SFRP 73 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEEEEE-TTEEEEEEEESSSG-----------GGGG
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccceeee-CcEEEEEEeccccc-----------cccc
Confidence 3678999999999999999999998765322 33455666677777 88899999999953 2345
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
.+..++..+|++|||+|..+.. .-.+..+.+.+++... ...|++|+.||.|..... ..++.... +. +.. +
T Consensus 74 ~w~~y~~~~~~iIfVvDssd~~--~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~--~~~~i~~~-l~--l~~-l 145 (175)
T PF00025_consen 74 LWKSYFQNADGIIFVVDSSDPE--RLQEAKEELKELLNDPELKDIPILILANKQDLPDAM--SEEEIKEY-LG--LEK-L 145 (175)
T ss_dssp GGGGGHTTESEEEEEEETTGGG--GHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS--THHHHHHH-TT--GGG-T
T ss_pred cceeeccccceeEEEEecccce--eecccccchhhhcchhhcccceEEEEeccccccCcc--hhhHHHhh-hh--hhh-c
Confidence 5666778999999999987331 1222333444444331 347999999999976553 33333222 00 011 1
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV 207 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~ 207 (225)
. ...++..+ .+++.++.++.+.+++|.+.
T Consensus 146 ~-~~~~~~v~----~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 146 K-NKRPWSVF----SCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp T-SSSCEEEE----EEBTTTTBTHHHHHHHHHHH
T ss_pred c-cCCceEEE----eeeccCCcCHHHHHHHHHhc
Confidence 1 12334443 33556679999999998764
No 167
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.68 E-value=3.7e-15 Score=113.68 Aligned_cols=168 Identities=15% Similarity=0.075 Sum_probs=97.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEE-EEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCE-MQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
..++|+++|..|+|||||++++...... ... ..|.... ...+.+ ++ ..+.+|||||...+ .
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~-~~~---~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~~-----------~ 65 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFP-KEY---IPTVFDNYSAQTAV-DGRTVSLNLWDTAGQEEY-----------D 65 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCC-cCC---CCceEeeeEEEEEE-CCEEEEEEEEECCCchhh-----------h
Confidence 3479999999999999999999876531 111 1222211 112233 33 47889999996532 2
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCC----ch
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECP----KP 168 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~----~~ 168 (225)
.....++.++|++|+|+|++++-+-+.. .++..+.... ...|+++|.||.|+.... ...+........ +.
T Consensus 66 ~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~~~-~~~~~~~~~~~~~v~~~~ 141 (191)
T cd01875 66 RLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC---PNVPILLVGTKKDLRNDA-DTLKKLKEQGQAPITPQQ 141 (191)
T ss_pred hhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEeChhhhcCh-hhHHHHhhccCCCCCHHH
Confidence 3334567789999999999754333322 1233333322 247999999999975432 111111111001 11
Q ss_pred HHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 169 LKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
.+++.+..+. +.++ ..||..+.+++++++.+.+.+..
T Consensus 142 ~~~~a~~~~~-~~~~----e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 142 GGALAKQIHA-VKYL----ECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred HHHHHHHcCC-cEEE----EeCCCCCCCHHHHHHHHHHHHhc
Confidence 2333333331 1122 34556778999999999876643
No 168
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.67 E-value=6e-15 Score=110.89 Aligned_cols=164 Identities=16% Similarity=0.047 Sum_probs=94.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
+++|+++|.+|+|||||+.+++..... .. ..++........+.. ++ ..+.+|||||.... ...
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~-~~--~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~ 65 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFP-GE--YIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDY-----------DRL 65 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCC-Cc--CCCcceeeeEEEEEE-CCEEEEEEEEECCCchhh-----------hhh
Confidence 368999999999999999999875532 11 111111221222333 33 46889999996533 122
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh----cCCchHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR----ECPKPLK 170 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~----~~~~~~~ 170 (225)
...+...+|++|+|+|++++-+-... .++..+.... ...|+++|.||.|+.+.. ...+...+. ...+..+
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~ 141 (174)
T cd01871 66 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQGL 141 (174)
T ss_pred hhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhccCh-hhHHHHhhccCCCCCHHHHH
Confidence 23456788999999999754332221 2334444322 247999999999975432 122222111 0111123
Q ss_pred HHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158 171 EILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNS 206 (225)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~ 206 (225)
++.+..+. ..+ ...||.++.+++++++.+.+
T Consensus 142 ~~~~~~~~-~~~----~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 142 AMAKEIGA-VKY----LECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred HHHHHcCC-cEE----EEecccccCCHHHHHHHHHH
Confidence 33333332 111 24566778999999988864
No 169
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.67 E-value=7.2e-16 Score=117.42 Aligned_cols=167 Identities=16% Similarity=0.114 Sum_probs=96.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
.+|+++|.+|+|||||++++++...... . .+... ......+.. ++ ..+.||||||...+. ...
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~-~-~~t~~-~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~-----------~l~ 65 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQV-Y-EPTVF-ENYVHDIFV-DGLHIELSLWDTAGQEEFD-----------RLR 65 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCc-c-CCcce-eeeEEEEEE-CCEEEEEEEEECCCChhcc-----------ccc
Confidence 3799999999999999999997664221 1 11111 111122333 33 478999999975431 122
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhc-----CCchHH
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE-----CPKPLK 170 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~-----~~~~~~ 170 (225)
..++..+|++++|++++++-+-... .++..+.... ...|+++|.||+|+.... ...+...+. ..+...
T Consensus 66 ~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~---~~~piilvgNK~Dl~~~~--~~~~~~~~~~~~~v~~~~~~ 140 (189)
T cd04134 66 SLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC---PGVKLVLVALKCDLREAR--NERDDLQRYGKHTISYEEGL 140 (189)
T ss_pred cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccCh--hhHHHHhhccCCCCCHHHHH
Confidence 2356788999999999854333222 2344444322 247999999999986543 111111110 000112
Q ss_pred HHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 171 EILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
++....+. +.+ ...||.++.+++++++.+.+.+...
T Consensus 141 ~~~~~~~~-~~~----~e~SAk~~~~v~e~f~~l~~~~~~~ 176 (189)
T cd04134 141 AVAKRINA-LRY----LECSAKLNRGVNEAFTEAARVALNV 176 (189)
T ss_pred HHHHHcCC-CEE----EEccCCcCCCHHHHHHHHHHHHhcc
Confidence 22322221 122 2456677799999999998777643
No 170
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.67 E-value=1.4e-15 Score=133.36 Aligned_cols=167 Identities=15% Similarity=0.231 Sum_probs=108.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCcc-ccc-------------cCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRA-FKS-------------KAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSAD 85 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~-~~~-------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~ 85 (225)
.+|+++|+.++|||||+++|+.... +.. .....+.|.......+.| .+..++||||||+.++.
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTPGh~DF~-- 78 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTPGHADFG-- 78 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECCCHHHHH--
Confidence 5799999999999999999986432 111 011346777777788888 88999999999987542
Q ss_pred cHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcC
Q 036158 86 SEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGREC 165 (225)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~ 165 (225)
..+ ......+|++++|+|+.+.....++..+..+.+. ..|+++++||+|.... ...+...+
T Consensus 79 -----~ev----~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~-----~ip~IVviNKiD~~~a---~~~~v~~e-- 139 (594)
T TIGR01394 79 -----GEV----ERVLGMVDGVLLLVDASEGPMPQTRFVLKKALEL-----GLKPIVVINKIDRPSA---RPDEVVDE-- 139 (594)
T ss_pred -----HHH----HHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC-----CCCEEEEEECCCCCCc---CHHHHHHH--
Confidence 122 2334466999999999766666666666666552 3688999999997543 33333333
Q ss_pred CchHHHHHHHcCCcE--EEeeCCCccccccH----------HHHHHHHHHHHHHHHHcC
Q 036158 166 PKPLKEILQLCDNRC--VLFDNKTKDTAKRT----------EQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 166 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----------~~v~~l~~~i~~~~~~~~ 212 (225)
+.+++..++..- +.+ .....|+..+ .++..|++.|.+.++...
T Consensus 140 ---i~~l~~~~g~~~e~l~~-pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~ 194 (594)
T TIGR01394 140 ---VFDLFAELGADDEQLDF-PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK 194 (594)
T ss_pred ---HHHHHHhhccccccccC-cEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence 344443322110 000 1122233333 478999999988887653
No 171
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.67 E-value=8.2e-15 Score=110.85 Aligned_cols=166 Identities=14% Similarity=0.082 Sum_probs=98.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
+..++|+++|.+|+|||||++++...... .. ..++........+.+ ++ ..+.||||+|...+ .
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~-~~--~~pT~~~~~~~~~~~-~~~~~~l~iwDtaG~e~~-----------~ 67 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFP-EN--YVPTVFENYTASFEI-DTQRIELSLWDTSGSPYY-----------D 67 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCC-Cc--cCCceeeeeEEEEEE-CCEEEEEEEEECCCchhh-----------H
Confidence 45689999999999999999999876532 21 111111111223344 33 37999999996422 2
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh----cCCch
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR----ECPKP 168 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~----~~~~~ 168 (225)
.....++.++|++|+|+|++++.+-.. ..++..+.+..+ ..|+++|.||.|+.... ....+.... -..+.
T Consensus 68 ~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~~~~-~~~~~~~~~~~~~v~~~~ 143 (182)
T cd04172 68 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRTDL-TTLVELSNHRQTPVSYDQ 143 (182)
T ss_pred hhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEeEChhhhcCh-hhHHHHHhcCCCCCCHHH
Confidence 233456788999999999985544333 234455555432 37999999999975421 111111000 01112
Q ss_pred HHHHHHHcCC-cEEEeeCCCccccccHHH-HHHHHHHHHHH
Q 036158 169 LKEILQLCDN-RCVLFDNKTKDTAKRTEQ-VGKLLSLVNSV 207 (225)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-v~~l~~~i~~~ 207 (225)
..++.+..+. .|+ .+||+++.+ +++++..+.+.
T Consensus 144 ~~~~a~~~~~~~~~------E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 144 GANMAKQIGAATYI------ECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred HHHHHHHcCCCEEE------ECCcCCCCCCHHHHHHHHHHH
Confidence 3444444442 222 446667787 99999887663
No 172
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.67 E-value=4.8e-15 Score=110.64 Aligned_cols=157 Identities=17% Similarity=0.149 Sum_probs=91.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
++|+++|.+|+|||||++++.+...... . ..++.........++ ....+.+|||||...+. ....
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~-~--~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~~~ 67 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIES-Y--DPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFT-----------AMRE 67 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc-c--CCcchheEEEEEEECCEEEEEEEEeCCCcccch-----------hhhH
Confidence 6899999999999999999997664222 1 111111112223331 12478899999976542 1222
Q ss_pred hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158 99 MTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
..+..++++++|++.+++-+-.. ..+.+.+..... ....|++++.||.|.........++ ...+.+.++
T Consensus 68 ~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~---------~~~~~~~~~ 137 (168)
T cd04177 68 LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKD-SDNVPMVLVGNKADLEDDRQVSRED---------GVSLSQQWG 137 (168)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCCEEEEEEChhccccCccCHHH---------HHHHHHHcC
Confidence 34456799999999874322222 223344443322 2347999999999976443111111 122333333
Q ss_pred -CcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158 178 -NRCVLFDNKTKDTAKRTEQVGKLLSLVNS 206 (225)
Q Consensus 178 -~~~~~~~~~~~~~~~~~~~v~~l~~~i~~ 206 (225)
..+ ...||.++.+++++++.+..
T Consensus 138 ~~~~------~~~SA~~~~~i~~~f~~i~~ 161 (168)
T cd04177 138 NVPF------YETSARKRTNVDEVFIDLVR 161 (168)
T ss_pred CceE------EEeeCCCCCCHHHHHHHHHH
Confidence 222 23566677899999988864
No 173
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.67 E-value=5e-15 Score=111.03 Aligned_cols=162 Identities=19% Similarity=0.110 Sum_probs=94.6
Q ss_pred EEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158 22 LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (225)
Q Consensus 22 i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (225)
|+++|.+|+|||||++++.+.... .. ...+........+.. ++. .+.+|||||..... .....
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~-~~--~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~~~~ 65 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFP-ED--YVPTVFENYSADVEV-DGKPVELGLWDTAGQEDYD-----------RLRPL 65 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCC-CC--CCCcEEeeeeEEEEE-CCEEEEEEEEECCCCcccc-----------hhchh
Confidence 589999999999999999986642 21 111122222223344 333 68999999975432 11223
Q ss_pred cCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh----cCCchHHHHH
Q 036158 100 TKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR----ECPKPLKEIL 173 (225)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~----~~~~~~~~~~ 173 (225)
....+|++|+|+|.+++.+-+. ..++..+.+.. ...|+++|.||+|..... ...+++... ...+...++.
T Consensus 66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~~ 141 (174)
T smart00174 66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC---PNTPIILVGTKLDLREDK-STLRELSKQKQEPVTYEQGEALA 141 (174)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEecChhhhhCh-hhhhhhhcccCCCccHHHHHHHH
Confidence 5668899999999974422222 12344444432 248999999999976532 122222111 0011123344
Q ss_pred HHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158 174 QLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 174 ~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~ 208 (225)
+..+. .+ ...|+.++.+++++++.+.+.+
T Consensus 142 ~~~~~~~~------~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 142 KRIGAVKY------LECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred HHcCCcEE------EEecCCCCCCHHHHHHHHHHHh
Confidence 44443 22 2346677799999999887654
No 174
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.67 E-value=8.2e-15 Score=110.91 Aligned_cols=163 Identities=12% Similarity=0.062 Sum_probs=95.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
++|+++|..|+|||||++++.+.... .. ..+..........+.. ++ ..+.+|||+|...+ ...+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~-~~-~~~T~g~~~~~~~i~~-~~~~~~l~iwDt~G~~~~-----------~~~~ 66 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFD-ED-YIQTLGVNFMEKTISI-RGTEITFSIWDLGGQREF-----------INML 66 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CC-CCCccceEEEEEEEEE-CCEEEEEEEEeCCCchhH-----------HHhh
Confidence 47999999999999999999876532 21 1222222222234444 34 46899999996432 2333
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccccEEEEEecCCCCCCCcc-cHHHHhhhcCCchHHHHHHH
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEEG-AAIHILESLFGKKISDYMIVVFTGGDELEDNDE-TLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 175 (225)
..+...+|++++|+|++++.+..+. .+++.+.+... ...| ++|.||+|+...... ..+....+ .+++.+.
T Consensus 67 ~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~--~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~-----~~~~a~~ 138 (182)
T cd04128 67 PLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNK--TAIP-ILVGTKYDLFADLPPEEQEEITKQ-----ARKYAKA 138 (182)
T ss_pred HHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCE-EEEEEchhccccccchhhhhhHHH-----HHHHHHH
Confidence 4567789999999999754333221 23333433221 1245 678999998642210 11111111 3334444
Q ss_pred cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
.+..+ ...||+++.+++++++.+.+.+.+
T Consensus 139 ~~~~~------~e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 139 MKAPL------IFCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred cCCEE------EEEeCCCCCCHHHHHHHHHHHHHh
Confidence 44322 245667779999999998876654
No 175
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.67 E-value=1.7e-14 Score=112.85 Aligned_cols=171 Identities=14% Similarity=0.036 Sum_probs=100.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
....+|+++|..|+|||||++++...... ... .+.. .......+.+ ++ ..+.||||+|...+ .
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~-~~y-~pTi-~~~~~~~i~~-~~~~v~l~iwDTaG~e~~-----------~ 75 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYP-ETY-VPTV-FENYTAGLET-EEQRVELSLWDTSGSPYY-----------D 75 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCC-CCc-CCce-eeeeEEEEEE-CCEEEEEEEEeCCCchhh-----------H
Confidence 45689999999999999999999876532 211 1111 1111122333 33 37999999995422 2
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhh----hcCCch
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLG----RECPKP 168 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~----~~~~~~ 168 (225)
.....++.++|++|+|+|++++.+-.. ..++..+.+.. ...|+++|.||.|+..... ...+... .-..+.
T Consensus 76 ~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~---~~~piilVgNK~DL~~~~~-~~~~l~~~~~~~Vs~~e 151 (232)
T cd04174 76 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC---PSTRILLIGCKTDLRTDLS-TLMELSNQKQAPISYEQ 151 (232)
T ss_pred HHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccc-hhhhhccccCCcCCHHH
Confidence 233356789999999999985543332 23444454433 2378999999999753210 1111000 001112
Q ss_pred HHHHHHHcCCcEEEeeCCCccccccHH-HHHHHHHHHHHHHHHc
Q 036158 169 LKEILQLCDNRCVLFDNKTKDTAKRTE-QVGKLLSLVNSVIVQN 211 (225)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~~i~~~~~~~ 211 (225)
.+++.+..+.. .+ ..+||+++. ++++++..+.....+.
T Consensus 152 ~~~~a~~~~~~-~~----~EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 152 GCALAKQLGAE-VY----LECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred HHHHHHHcCCC-EE----EEccCCcCCcCHHHHHHHHHHHHHHh
Confidence 44555554532 11 245666666 7999999887765443
No 176
>PRK00049 elongation factor Tu; Reviewed
Probab=99.66 E-value=6.5e-15 Score=124.12 Aligned_cols=171 Identities=18% Similarity=0.171 Sum_probs=110.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccc--------------cccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCC
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAF--------------KSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (225)
.++.++|+++|+.++|||||+++|++.... .......+.|.......+.. ++..+.++||||+.
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~- 86 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-EKRHYAHVDCPGHA- 86 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-CCeEEEEEECCCHH-
Confidence 467899999999999999999999973210 01112456777776666665 67789999999974
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEE-EEEecCCCCCCCcccHHHH
Q 036158 82 SSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMI-VVFTGGDELEDNDETLEDY 160 (225)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-vv~~k~D~~~~~~~~~~~~ 160 (225)
.+...+......+|++++|+|+.......+.+.+..+... ..|.+ +++||+|..... ...+..
T Consensus 87 ----------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~-----g~p~iiVvvNK~D~~~~~-~~~~~~ 150 (396)
T PRK00049 87 ----------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-----GVPYIVVFLNKCDMVDDE-ELLELV 150 (396)
T ss_pred ----------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc-----CCCEEEEEEeecCCcchH-HHHHHH
Confidence 2223333445688999999999877777777777776653 25655 689999986421 223333
Q ss_pred hhhcCCchHHHHHHHcCC-----cEEEeeCCCcc--c--cccHHHHHHHHHHHHHHHH
Q 036158 161 LGRECPKPLKEILQLCDN-----RCVLFDNKTKD--T--AKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~--~~~~~~v~~l~~~i~~~~~ 209 (225)
..+ +++++..++. ++...+..... + ..-..++..|++.|.++++
T Consensus 151 ~~~-----i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 151 EME-----VRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred HHH-----HHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 333 6667766543 33333332110 0 0111257889999988764
No 177
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.66 E-value=3.3e-15 Score=111.14 Aligned_cols=160 Identities=17% Similarity=0.216 Sum_probs=90.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
+|+++|.+|+|||||+++++....... ...++.........+ ++. .+.+|||||...... . ...
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~--~----~~~---- 66 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGE---YDPNLESLYSRQVTI-DGEQVSLEILDTAGQQQADT--E----QLE---- 66 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccc---cCCChHHhceEEEEE-CCEEEEEEEEECCCCccccc--c----hHH----
Confidence 589999999999999999986543111 112121112222333 333 578999999874210 0 111
Q ss_pred hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158 99 MTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
.....+|++|+|+|+.++-+-.. ..++..+..........|+++|.||+|.........++ .....+..+
T Consensus 67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~---------~~~~~~~~~ 137 (165)
T cd04146 67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEE---------GEKLASELG 137 (165)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHH---------HHHHHHHcC
Confidence 23346799999999974432222 23344555432112247999999999965432111111 233333444
Q ss_pred CcEEEeeCCCccccccH-HHHHHHHHHHHHHHH
Q 036158 178 NRCVLFDNKTKDTAKRT-EQVGKLLSLVNSVIV 209 (225)
Q Consensus 178 ~~~~~~~~~~~~~~~~~-~~v~~l~~~i~~~~~ 209 (225)
..++ ..|+..+ .+++++++.+.+.+.
T Consensus 138 ~~~~------e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 138 CLFF------EVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred CEEE------EeCCCCCchhHHHHHHHHHHHHh
Confidence 3322 3344455 489999999987654
No 178
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.66 E-value=5.2e-15 Score=108.24 Aligned_cols=154 Identities=19% Similarity=0.214 Sum_probs=90.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
++|+++|.+|+|||||+|+|++.. +.. ...++.+.......+.. ++ ..+.+|||||..+.. ....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~----~~~~------ 68 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FIT-EYKPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYR----AIRR------ 68 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcC-cCCCCceeeeeEEEEEE-CCEEEEEEEEECCCcccch----HHHH------
Confidence 689999999999999999999887 333 23445555555544555 55 678999999965431 1111
Q ss_pred hhcCCCccEEEEEEeCCCC-CCHH--HHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 98 GMTKDGIHAVLVVFSVRNR-FSEE--EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~-~~~~--~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
.....++.+++++|.... .+.. .......+...... ..|+++++||+|..... .... ....+.
T Consensus 69 -~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~---~~~~--------~~~~~~ 134 (161)
T TIGR00231 69 -LYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRDAK---LKTH--------VAFLFA 134 (161)
T ss_pred -HHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCcch---hhHH--------HHHHHh
Confidence 112234556666555422 1111 11233333333221 47999999999986542 1111 233333
Q ss_pred HcCCcEEEeeCCCccccccHHHHHHHHHHHH
Q 036158 175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVN 205 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~ 205 (225)
..+.. ...+.++..+.++.++++.|.
T Consensus 135 ~~~~~-----~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 135 KLNGE-----PIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred hccCC-----ceEEeecCCCCCHHHHHHHhh
Confidence 33321 133445567789999988874
No 179
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=6e-15 Score=108.88 Aligned_cols=167 Identities=17% Similarity=0.176 Sum_probs=109.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
.-.++|+|+|.+|+|||=|+-++.+...... .......+.....+++ ++. ++.||||.|. ++++
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~--~~sTIGVDf~~rt~e~-~gk~iKlQIWDTAGQ-----------ERFr 72 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTES--YISTIGVDFKIRTVEL-DGKTIKLQIWDTAGQ-----------ERFR 72 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchh--hcceeeeEEEEEEeee-cceEEEEEeeecccc-----------HHHh
Confidence 3458999999999999999999987775322 1222333444445555 443 8999999995 4566
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
.....+++++|+||+|+|+++.-+-.. ..++..+.+.... ..|.++|.||+|+.+...-..++ .++..
T Consensus 73 tit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~--~v~~lLVGNK~Dl~~~~~v~~~~---------a~~fa 141 (205)
T KOG0084|consen 73 TITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASE--NVPKLLVGNKCDLTEKRVVSTEE---------AQEFA 141 (205)
T ss_pred hhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccC--CCCeEEEeeccccHhheecCHHH---------HHHHH
Confidence 778889999999999999985422222 2233344443322 36899999999987554111111 23444
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG 213 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~ 213 (225)
...+.+. ...+||+...++++.+..+...++....
T Consensus 142 ~~~~~~~-----f~ETSAK~~~NVe~~F~~la~~lk~~~~ 176 (205)
T KOG0084|consen 142 DELGIPI-----FLETSAKDSTNVEDAFLTLAKELKQRKG 176 (205)
T ss_pred HhcCCcc-----eeecccCCccCHHHHHHHHHHHHHHhcc
Confidence 4444432 2345666668999988888877766543
No 180
>PRK09866 hypothetical protein; Provisional
Probab=99.66 E-value=7e-15 Score=126.75 Aligned_cols=121 Identities=12% Similarity=0.054 Sum_probs=77.6
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 036158 69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGD 148 (225)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D 148 (225)
..++|+||||+.... ...+.+.+.+ ....+|+|+||+|+....+..+..+++.+++.- . ..|+++|+||+|
T Consensus 230 ~QIIFVDTPGIhk~~--~~~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~-K--~~PVILVVNKID 300 (741)
T PRK09866 230 GQLTLLDTPGPNEAG--QPHLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAVG-Q--SVPLYVLVNKFD 300 (741)
T ss_pred CCEEEEECCCCCCcc--chHHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcC-C--CCCEEEEEEccc
Confidence 468999999998542 1223333333 455679999999998667888888888877631 1 149999999999
Q ss_pred CCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158 149 ELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNS 206 (225)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~ 206 (225)
.........+..... +...+...+. .+....+.||..+.++++|++.|.+
T Consensus 301 l~dreeddkE~Lle~-----V~~~L~q~~i---~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 301 QQDRNSDDADQVRAL-----ISGTLMKGCI---TPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CCCcccchHHHHHHH-----HHHHHHhcCC---CCceEEEEeCCCCCCHHHHHHHHHh
Confidence 864322122222222 2223222222 2445566777888999999998854
No 181
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.6e-15 Score=111.49 Aligned_cols=166 Identities=18% Similarity=0.197 Sum_probs=103.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
..++|+|+|.+|+|||||+-++.............+.....+...+.- ...++.+|||.|...+ ....
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~-~~ikfeIWDTAGQERy-----------~sla 71 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDD-NTIKFEIWDTAGQERY-----------HSLA 71 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCC-cEEEEEEEEcCCcccc-----------cccc
Confidence 458999999999999999988886654222222223222222222211 2347889999997633 3444
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc-ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK-ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
.+++++++++|+|+|+++. ....+.-.|++++...- ...-+.+|.||+|+.+..+...++ .+...+..
T Consensus 72 pMYyRgA~AAivvYDit~~--~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~e---------a~~yAe~~ 140 (200)
T KOG0092|consen 72 PMYYRGANAAIVVYDITDE--ESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEE---------AQAYAESQ 140 (200)
T ss_pred cceecCCcEEEEEEecccH--HHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHH---------HHHHHHhc
Confidence 5789999999999999843 22333444555543221 123456699999988754233332 23444443
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
+. ..| .+|++++.++++++..|.+.+.+..
T Consensus 141 gl--l~~----ETSAKTg~Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 141 GL--LFF----ETSAKTGENVNEIFQAIAEKLPCSD 170 (200)
T ss_pred CC--EEE----EEecccccCHHHHHHHHHHhccCcc
Confidence 33 222 4566778999999999988876653
No 182
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.66 E-value=4.9e-15 Score=112.72 Aligned_cols=156 Identities=19% Similarity=0.241 Sum_probs=107.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCC-----CCCceeEEEEEEEEeeCCc---eEEEEeCCCCCCCCCCcHHHH
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAG-----SSGVTKTCEMQRTMLKDGQ---VVNVIDTPGLFDSSADSEFVS 90 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~-----~~~~t~~~~~~~~~~~~~~---~~~liDtPG~~~~~~~~~~~~ 90 (225)
.++|.|+|.+|.|||||+|.|+...+..+... +...|++.....-.+.+++ +++++|||||+|.. +++.-|
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqI-nN~ncW 124 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQI-NNDNCW 124 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCccccc-Cccchh
Confidence 58999999999999999999987665442211 2234544444433332332 89999999999874 343344
Q ss_pred HHHHHHHhh------------------cCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158 91 KEIVKCIGM------------------TKDGIHAVLVVFSVR-NRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELE 151 (225)
Q Consensus 91 ~~~~~~~~~------------------~~~~~~~ii~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~ 151 (225)
+-+..++.. ..-++|.++|.++.+ +.+...|.+.++.|.+. .+++.|+.|+|.+.
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v------vNvvPVIakaDtlT 198 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV------VNVVPVIAKADTLT 198 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh------heeeeeEeeccccc
Confidence 444433321 124679999999774 56888899999988886 79999999999775
Q ss_pred CCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCc
Q 036158 152 DNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTK 188 (225)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (225)
-+ .-.++.++ +++-++..++.+++.+....
T Consensus 199 le--Er~~Fkqr-----I~~el~~~~i~vYPq~~fde 228 (336)
T KOG1547|consen 199 LE--ERSAFKQR-----IRKELEKHGIDVYPQDSFDE 228 (336)
T ss_pred HH--HHHHHHHH-----HHHHHHhcCccccccccccc
Confidence 53 44555555 77777788887776655433
No 183
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.66 E-value=7.5e-16 Score=110.08 Aligned_cols=141 Identities=23% Similarity=0.293 Sum_probs=90.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (225)
.||+|+|++|||||||+++|.+... ....|.... + .+ .+|||||-+- .+. .+..++..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~------~~~KTq~i~-----~-~~---~~IDTPGEyi---E~~----~~y~aLi~ 59 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI------RYKKTQAIE-----Y-YD---NTIDTPGEYI---ENP----RFYHALIV 59 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC------CcCccceeE-----e-cc---cEEECChhhe---eCH----HHHHHHHH
Confidence 4899999999999999999998764 112233322 2 11 2599999652 122 33444444
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158 100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 179 (225)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (225)
....+|++++|.|++++...--..+. ..| .+|++-|+||+|...+. ..++. .++.++..|..
T Consensus 60 ta~dad~V~ll~dat~~~~~~pP~fa----~~f----~~pvIGVITK~Dl~~~~-~~i~~---------a~~~L~~aG~~ 121 (143)
T PF10662_consen 60 TAQDADVVLLLQDATEPRSVFPPGFA----SMF----NKPVIGVITKIDLPSDD-ANIER---------AKKWLKNAGVK 121 (143)
T ss_pred HHhhCCEEEEEecCCCCCccCCchhh----ccc----CCCEEEEEECccCccch-hhHHH---------HHHHHHHcCCC
Confidence 55588999999999854322111222 222 37999999999987332 22222 46677777765
Q ss_pred EEEeeCCCccccccHHHHHHHHHHHH
Q 036158 180 CVLFDNKTKDTAKRTEQVGKLLSLVN 205 (225)
Q Consensus 180 ~~~~~~~~~~~~~~~~~v~~l~~~i~ 205 (225)
.. ...|+.++.++++|.++|.
T Consensus 122 ~i-----f~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 122 EI-----FEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred Ce-----EEEECCCCcCHHHHHHHHh
Confidence 33 2334456699999999885
No 184
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.66 E-value=1.9e-15 Score=109.69 Aligned_cols=140 Identities=19% Similarity=0.283 Sum_probs=84.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT 100 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (225)
+|+++|.+|+|||||+|++.+.... ...|.. ..+ .. .+|||||.... ...+.+.+...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~------~~~t~~-----~~~-~~---~~iDt~G~~~~-------~~~~~~~~~~~ 59 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL------YKKTQA-----VEY-ND---GAIDTPGEYVE-------NRRLYSALIVT 59 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc------ccccee-----EEE-cC---eeecCchhhhh-------hHHHHHHHHHH
Confidence 7999999999999999999987631 112221 223 22 58999996311 11222222234
Q ss_pred CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcE
Q 036158 101 KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 180 (225)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (225)
+.++|++++|+|++++.+.....+++ .+ ..|+++|+||+|+.+.. ...+ + ..+.++..+..
T Consensus 60 ~~~ad~vilv~d~~~~~s~~~~~~~~----~~----~~p~ilv~NK~Dl~~~~-~~~~----~-----~~~~~~~~~~~- 120 (142)
T TIGR02528 60 AADADVIALVQSATDPESRFPPGFAS----IF----VKPVIGLVTKIDLAEAD-VDIE----R-----AKELLETAGAE- 120 (142)
T ss_pred hhcCCEEEEEecCCCCCcCCChhHHH----hc----cCCeEEEEEeeccCCcc-cCHH----H-----HHHHHHHcCCC-
Confidence 67899999999997555443322222 12 14899999999976422 1111 1 23344443321
Q ss_pred EEeeCCCccccccHHHHHHHHHHHH
Q 036158 181 VLFDNKTKDTAKRTEQVGKLLSLVN 205 (225)
Q Consensus 181 ~~~~~~~~~~~~~~~~v~~l~~~i~ 205 (225)
.....|+.++.+++++++.+.
T Consensus 121 ----~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 121 ----PIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred ----cEEEEecCCCCCHHHHHHHHh
Confidence 112345667789999998773
No 185
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.66 E-value=9.1e-16 Score=131.70 Aligned_cols=145 Identities=12% Similarity=0.162 Sum_probs=94.6
Q ss_pred CCCCCCCceeEEEEcCCCCCHHHHHHHHhCCcccccc-------------------------------CCCCCceeEEEE
Q 036158 12 PTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSK-------------------------------AGSSGVTKTCEM 60 (225)
Q Consensus 12 ~~~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~-------------------------------~~~~~~t~~~~~ 60 (225)
..+...+.++|+++|+.++|||||+++|+........ ....+.|.+...
T Consensus 20 ~~~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~ 99 (474)
T PRK05124 20 HAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAY 99 (474)
T ss_pred hhccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeE
Confidence 3455678899999999999999999999855421110 012346677777
Q ss_pred EEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccE
Q 036158 61 QRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYM 140 (225)
Q Consensus 61 ~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 140 (225)
..+.+ ++..+.|+||||+.++ ...+. .....+|++++|+|+.......+.+.+..+.. ++. +++
T Consensus 100 ~~~~~-~~~~i~~iDTPGh~~f-------~~~~~----~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~-lg~---~~i 163 (474)
T PRK05124 100 RYFST-EKRKFIIADTPGHEQY-------TRNMA----TGASTCDLAILLIDARKGVLDQTRRHSFIATL-LGI---KHL 163 (474)
T ss_pred EEecc-CCcEEEEEECCCcHHH-------HHHHH----HHHhhCCEEEEEEECCCCccccchHHHHHHHH-hCC---Cce
Confidence 77777 7789999999996432 12222 22357799999999986665555554444433 222 578
Q ss_pred EEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158 141 IVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 141 ~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
++++||+|........+++...+ +..++..++
T Consensus 164 IvvvNKiD~~~~~~~~~~~i~~~-----l~~~~~~~~ 195 (474)
T PRK05124 164 VVAVNKMDLVDYSEEVFERIRED-----YLTFAEQLP 195 (474)
T ss_pred EEEEEeeccccchhHHHHHHHHH-----HHHHHHhcC
Confidence 99999999864332234444333 455554443
No 186
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.66 E-value=2.2e-14 Score=108.23 Aligned_cols=165 Identities=19% Similarity=0.196 Sum_probs=95.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
.+|+++|.+|+|||||++++++...... ..+++.........+ .+ ..+.+|||||..+. ....
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~-----------~~~~ 66 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVES---YYPTIENTFSKIIRY-KGQDYHLEIVDTAGQDEY-----------SILP 66 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccc---cCcchhhhEEEEEEE-CCEEEEEEEEECCChHhh-----------HHHH
Confidence 6899999999999999999997663211 111121111222333 33 35789999997532 1222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
......+|++++|++.++..+... ..++..+..... ....|++++.||+|..........+ ...+.+..
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~~~~~~---------~~~~~~~~ 136 (180)
T cd04137 67 QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLG-KESVPIVLVGNKSDLHTQRQVSTEE---------GKELAESW 136 (180)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEchhhhhcCccCHHH---------HHHHHHHc
Confidence 234456799999999874322222 222233333221 1246999999999976432111111 22333333
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCC
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQP 215 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~ 215 (225)
+..+. +.|+.++.++.+++..+.+.+.......
T Consensus 137 ~~~~~------~~Sa~~~~gv~~l~~~l~~~~~~~~~~~ 169 (180)
T cd04137 137 GAAFL------ESSARENENVEEAFELLIEEIEKVENPL 169 (180)
T ss_pred CCeEE------EEeCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 43222 3455667899999999988777665443
No 187
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.65 E-value=2.4e-14 Score=107.95 Aligned_cols=164 Identities=14% Similarity=0.067 Sum_probs=95.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
.+|+++|.+|+|||||++++.+... ... ..++........+.+ ++ ..+.+|||||...+ ....
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f-~~~--~~~t~~~~~~~~~~~-~~~~~~l~iwDt~G~~~~-----------~~~~ 66 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY-PET--YVPTVFENYTASFEI-DEQRIELSLWDTSGSPYY-----------DNVR 66 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-CCC--cCCceEEEEEEEEEE-CCEEEEEEEEECCCchhh-----------hhcc
Confidence 6899999999999999999997653 221 111111111223344 33 37889999996432 1222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh----cCCchHHH
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR----ECPKPLKE 171 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~----~~~~~~~~ 171 (225)
..++..+|++|+|+|.+++.+-.. ..++..+++..+ ..|+++|.||.|+.+.. ....+.... -..+..++
T Consensus 67 ~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~---~~~iilVgnK~DL~~~~-~~~~~~~~~~~~~v~~~e~~~ 142 (178)
T cd04131 67 PLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP---NTKVLLVGCKTDLRTDL-STLMELSHQRQAPVSYEQGCA 142 (178)
T ss_pred hhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC---CCCEEEEEEChhhhcCh-hHHHHHHhcCCCCCCHHHHHH
Confidence 346778999999999985544433 234455555432 37999999999975421 111111000 01112344
Q ss_pred HHHHcCCcEEEeeCCCccccccHHH-HHHHHHHHHHH
Q 036158 172 ILQLCDNRCVLFDNKTKDTAKRTEQ-VGKLLSLVNSV 207 (225)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~-v~~l~~~i~~~ 207 (225)
+.+..+.. .++ .+||.++.+ +++++..+.+.
T Consensus 143 ~a~~~~~~-~~~----E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 143 IAKQLGAE-IYL----ECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred HHHHhCCC-EEE----ECccCcCCcCHHHHHHHHHHH
Confidence 44444421 122 445666675 99999888664
No 188
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.65 E-value=2.2e-15 Score=113.03 Aligned_cols=165 Identities=16% Similarity=0.133 Sum_probs=93.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
.+|+++|.+|+|||||++++.+...... ..++........+.+ ++ ..+.+|||||..+.. ...
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~~ 66 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEV---YVPTVFENYVADIEV-DGKQVELALWDTAGQEDYD-----------RLR 66 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCC---CCCccccceEEEEEE-CCEEEEEEEEeCCCchhhh-----------hcc
Confidence 5899999999999999999997653211 111111111223344 33 368999999975331 111
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhc-C---CchHHH
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE-C---PKPLKE 171 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~-~---~~~~~~ 171 (225)
......+|++++|++++++.+... ..++..+.+.. ...|+++|.||+|+.+.. ...++..... . ....++
T Consensus 67 ~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~-~~~~~i~~~~~~~v~~~~~~~ 142 (175)
T cd01870 67 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDE-HTRRELAKMKQEPVKPEEGRD 142 (175)
T ss_pred ccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhcccCh-hhhhhhhhccCCCccHHHHHH
Confidence 234568899999999974422222 12333333322 247999999999976432 1111111100 0 011233
Q ss_pred HHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158 172 ILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~ 208 (225)
+...++.. .....||..+.+++++++.+.+.+
T Consensus 143 ~~~~~~~~-----~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 143 MANKIGAF-----GYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred HHHHcCCc-----EEEEeccccCcCHHHHHHHHHHHh
Confidence 33333321 112456677799999999987643
No 189
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.65 E-value=7.7e-15 Score=123.72 Aligned_cols=172 Identities=18% Similarity=0.212 Sum_probs=105.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCc------cc--------cccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCC
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKR------AF--------KSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~------~~--------~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (225)
.++.++|+++|+.++|||||+++|++.. .+ .......+.|.......+.. ++..+.||||||+.+
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHAD 87 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchHH
Confidence 5778999999999999999999998431 00 01112356777766555555 567899999999753
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHh
Q 036158 82 SSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL 161 (225)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~ 161 (225)
+ ...+ ......+|++++|+|+.+.....+.+.+..+... + .+++++++||+|+.... ...+...
T Consensus 88 f-------~~~~----~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~-g---i~~iIvvvNK~Dl~~~~-~~~~~~~ 151 (394)
T TIGR00485 88 Y-------VKNM----ITGAAQMDGAILVVSATDGPMPQTREHILLARQV-G---VPYIVVFLNKCDMVDDE-ELLELVE 151 (394)
T ss_pred H-------HHHH----HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-C---CCEEEEEEEecccCCHH-HHHHHHH
Confidence 2 1222 2233477999999999866777777777776553 1 13455789999976432 1222222
Q ss_pred hhcCCchHHHHHHHcCC-----cEEEeeCCCcc--ccccHHHHHHHHHHHHHHHH
Q 036158 162 GRECPKPLKEILQLCDN-----RCVLFDNKTKD--TAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 162 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~v~~l~~~i~~~~~ 209 (225)
.+ ++++++..+. +++..++.... ...-..++.+|++.+.++.+
T Consensus 152 ~~-----i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~ 201 (394)
T TIGR00485 152 ME-----VRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIP 201 (394)
T ss_pred HH-----HHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCC
Confidence 23 5666666653 22222222110 01111346778888876653
No 190
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.65 E-value=6.6e-16 Score=126.89 Aligned_cols=178 Identities=19% Similarity=0.151 Sum_probs=97.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCC---ceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSG---VTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI 93 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (225)
+..++|+|+|.+|+|||||||+|.|-..-.......+ +|.....| ..|.-.++++||.||.+....+.+++.+++
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y--~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~ 110 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPY--PHPKFPNVTLWDLPGIGTPNFPPEEYLKEV 110 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEE--E-SS-TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeC--CCCCCCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence 3468999999999999999999987543323232332 33444333 344566899999999986655555444432
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC-------CCCcccHHHHhhhcCC
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDEL-------EDNDETLEDYLGRECP 166 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~-------~~~~~~~~~~~~~~~~ 166 (225)
.....|.||+|.+ . +++..+.++...+++. .+++++|-||+|.- .+..-.-++.+++ ++
T Consensus 111 ------~~~~yD~fiii~s-~-rf~~ndv~La~~i~~~-----gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~-IR 176 (376)
T PF05049_consen 111 ------KFYRYDFFIIISS-E-RFTENDVQLAKEIQRM-----GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQE-IR 176 (376)
T ss_dssp ------TGGG-SEEEEEES-S-S--HHHHHHHHHHHHT-----T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHH-HH
T ss_pred ------cccccCEEEEEeC-C-CCchhhHHHHHHHHHc-----CCcEEEEEecccccHhhhhccCCcccCHHHHHHH-HH
Confidence 2335588777655 3 8899999999888874 48999999999951 1111112223333 22
Q ss_pred chHHHHHHHcCC---cEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCC
Q 036158 167 KPLKEILQLCDN---RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQ 214 (225)
Q Consensus 167 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~ 214 (225)
+...+-++..+. +++.+++.... ......|.+.+.+-++.+.++
T Consensus 177 ~~c~~~L~k~gv~~P~VFLVS~~dl~----~yDFp~L~~tL~~dLp~~Kr~ 223 (376)
T PF05049_consen 177 ENCLENLQKAGVSEPQVFLVSSFDLS----KYDFPKLEETLEKDLPAHKRH 223 (376)
T ss_dssp HHHHHHHHCTT-SS--EEEB-TTTTT----STTHHHHHHHHHHHS-GGGHH
T ss_pred HHHHHHHHHcCCCcCceEEEeCCCcc----cCChHHHHHHHHHHhHHHHHH
Confidence 333444444332 45556665433 367888888888777666554
No 191
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.65 E-value=2.9e-15 Score=130.96 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=76.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-----------------CCceEEEEeCCCCCC
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-----------------DGQVVNVIDTPGLFD 81 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~liDtPG~~~ 81 (225)
.+.|+++|++|+|||||+|+|.+....... ..+.|.+.....+.++ ....+.||||||+..
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e--~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKRE--AGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccccccc--CCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence 467999999999999999999988653221 2223332222222110 012489999999754
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158 82 SSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELE 151 (225)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~ 151 (225)
+ ..........+|++++|+|+++.....+.+.+..+... ..|+++++||+|...
T Consensus 82 f-----------~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~-----~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 82 F-----------TNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY-----KTPFVVAANKIDRIP 135 (590)
T ss_pred H-----------HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc-----CCCEEEEEECCCccc
Confidence 3 12222345578999999999876766676666665442 379999999999864
No 192
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.65 E-value=2.2e-14 Score=102.68 Aligned_cols=143 Identities=17% Similarity=0.217 Sum_probs=102.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
.+++|+++|..|+||||+++.+++... ....+|...+....++ ++..+++||..|. ..++.+|
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~-----~~i~pt~gf~Iktl~~-~~~~L~iwDvGGq-----------~~lr~~W 77 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDT-----DTISPTLGFQIKTLEY-KGYTLNIWDVGGQ-----------KTLRSYW 77 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCc-----cccCCccceeeEEEEe-cceEEEEEEcCCc-----------chhHHHH
Confidence 479999999999999999999999873 3556788888889988 8999999999994 3567788
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc-c-ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK-K-ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
..++...|++|||+|..++..-. +....+++.+.+ + ...|++++.||.|....- ..++.... ..+.++...
T Consensus 78 ~nYfestdglIwvvDssD~~r~~--e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l--~~~~i~~~---~~L~~l~ks 150 (185)
T KOG0073|consen 78 KNYFESTDGLIWVVDSSDRMRMQ--ECKQELTELLVEERLAGAPLLVLANKQDLPGAL--SLEEISKA---LDLEELAKS 150 (185)
T ss_pred HHhhhccCeEEEEEECchHHHHH--HHHHHHHHHHhhhhhcCCceEEEEecCcCcccc--CHHHHHHh---hCHHHhccc
Confidence 88888999999999986443222 233344444333 2 346999999999976433 33332211 225667666
Q ss_pred cCCcEEEee
Q 036158 176 CDNRCVLFD 184 (225)
Q Consensus 176 ~~~~~~~~~ 184 (225)
+.++.....
T Consensus 151 ~~~~l~~cs 159 (185)
T KOG0073|consen 151 HHWRLVKCS 159 (185)
T ss_pred cCceEEEEe
Confidence 666655443
No 193
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.65 E-value=3.5e-14 Score=106.81 Aligned_cols=167 Identities=16% Similarity=0.095 Sum_probs=98.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
++|+++|.+|+|||||+.++..... .... ..+........+.. ++ ..+.+|||+|...+. ...
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f-~~~~--~~Ti~~~~~~~~~~-~~~~v~l~i~Dt~G~~~~~-----------~~~ 66 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF-PTDY--IPTVFDNFSANVSV-DGNTVNLGLWDTAGQEDYN-----------RLR 66 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC-CCCC--CCcceeeeEEEEEE-CCEEEEEEEEECCCCcccc-----------ccc
Confidence 5799999999999999999997653 2211 11111112223333 33 478999999976442 222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHh-hhcCCchHHHHHH
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL-GRECPKPLKEILQ 174 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~-~~~~~~~~~~~~~ 174 (225)
..++..+|++|+|+|.+++.+-... .++..++... ...|+++|.||+|+.+.......+.. .....+..+++.+
T Consensus 67 ~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~ 143 (176)
T cd04133 67 PLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA---PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRK 143 (176)
T ss_pred hhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHH
Confidence 3466789999999999855444332 3444444432 24799999999998543200000000 0001111334444
Q ss_pred HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
..+.. .++ .+||+.+.++++++..+.+++.
T Consensus 144 ~~~~~-~~~----E~SAk~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 144 QIGAA-AYI----ECSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred HcCCC-EEE----ECCCCcccCHHHHHHHHHHHHh
Confidence 43321 122 4566777999999999988763
No 194
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.65 E-value=2.8e-15 Score=127.73 Aligned_cols=170 Identities=18% Similarity=0.221 Sum_probs=104.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCcccc-----------------------------ccCCCCCceeEEEEEEEEee
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFK-----------------------------SKAGSSGVTKTCEMQRTMLK 66 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~ 66 (225)
.++.++|+++|+.++|||||+++|+...... ......+.|.+.....+.+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~- 82 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET- 82 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-
Confidence 4667999999999999999999998532110 0112346788887777877
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCC---CCHHHHHHHHHHHHHhcccccccEEEE
Q 036158 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNR---FSEEEGAAIHILESLFGKKISDYMIVV 143 (225)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~vv 143 (225)
++..+.||||||+.+ +...+......+|++++|+|+.++ ......+.+.... .++ ..+++++
T Consensus 83 ~~~~i~iiDtpGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~-~~~---~~~iIVv 147 (426)
T TIGR00483 83 DKYEVTIVDCPGHRD-----------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLAR-TLG---INQLIVA 147 (426)
T ss_pred CCeEEEEEECCCHHH-----------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHH-HcC---CCeEEEE
Confidence 778999999999642 222222344578999999999765 2222223222222 222 2578999
Q ss_pred EecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHH------------HHHHHHHHH
Q 036158 144 FTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVG------------KLLSLVNSV 207 (225)
Q Consensus 144 ~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~------------~l~~~i~~~ 207 (225)
+||+|+.......++....+ ++++++..+..... -...+.|+.++.++. .|++.|..+
T Consensus 148 iNK~Dl~~~~~~~~~~~~~e-----i~~~~~~~g~~~~~-~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~~ 217 (426)
T TIGR00483 148 INKMDSVNYDEEEFEAIKKE-----VSNLIKKVGYNPDT-VPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDAL 217 (426)
T ss_pred EEChhccCccHHHHHHHHHH-----HHHHHHHcCCCccc-ceEEEeeccccccccccccCCccccchHHHHHHhcC
Confidence 99999864332234344444 66677666532100 011234455556665 477777653
No 195
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.65 E-value=1.1e-14 Score=116.44 Aligned_cols=117 Identities=16% Similarity=0.225 Sum_probs=79.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccC--------------------CCCCceeEEEEEEEEeeCCceEEEEeCCC
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKA--------------------GSSGVTKTCEMQRTMLKDGQVVNVIDTPG 78 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~--------------------~~~~~t~~~~~~~~~~~~~~~~~liDtPG 78 (225)
..+|+++|+.|+|||||+++|+......... ...+.+.......+++ .+..+.+|||||
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTPG 80 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTPG 80 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECCC
Confidence 3689999999999999999998543211100 0123444555567788 788999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158 79 LFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED 152 (225)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~ 152 (225)
+.++. ..... ....+|++|+|+|+..........+++.... ...|+++++||+|....
T Consensus 81 ~~df~-------~~~~~----~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~-----~~~P~iivvNK~D~~~a 138 (267)
T cd04169 81 HEDFS-------EDTYR----TLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL-----RGIPIITFINKLDREGR 138 (267)
T ss_pred chHHH-------HHHHH----HHHHCCEEEEEEECCCCccHHHHHHHHHHHh-----cCCCEEEEEECCccCCC
Confidence 86542 11222 2346799999999976666555555544332 23789999999997654
No 196
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.64 E-value=3e-14 Score=109.24 Aligned_cols=172 Identities=15% Similarity=0.118 Sum_probs=99.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEE--EEEEEee------CCceEEEEeCCCCCCCCCCcHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCE--MQRTMLK------DGQVVNVIDTPGLFDSSADSEFVSK 91 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~------~~~~~~liDtPG~~~~~~~~~~~~~ 91 (225)
++|+++|.+|+|||||++.+.+...... ...|..+. .....++ ....+.||||+|...+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~----~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~--------- 67 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGR----PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESV--------- 67 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCC----CCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhH---------
Confidence 4799999999999999999998764322 12232222 2223331 1236899999996532
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhc-----------------ccccccEEEEEecCCCCCCC
Q 036158 92 EIVKCIGMTKDGIHAVLVVFSVRNRFSEEEG-AAIHILESLFG-----------------KKISDYMIVVFTGGDELEDN 153 (225)
Q Consensus 92 ~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~-----------------~~~~~~~~vv~~k~D~~~~~ 153 (225)
......++.++|++|+|+|.+++-+.+.. .++..+..... .....|+++|.||.|+....
T Consensus 68 --~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r 145 (202)
T cd04102 68 --KSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK 145 (202)
T ss_pred --HHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhc
Confidence 23334567789999999999855333322 23333332110 11246999999999976542
Q ss_pred cccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCc-cccccHHHHHHHHHHHHHHHHHc
Q 036158 154 DETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTK-DTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
...-+....+ ...+.++++......+-.-. .-+...++...|...+..++..+
T Consensus 146 ~~~~~~~~~~-----~~~ia~~~~~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (202)
T cd04102 146 ESSGNLVLTA-----RGFVAEQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIEKR 199 (202)
T ss_pred ccchHHHhhH-----hhhHHHhcCCceEEEecCCcccccCCCccHHHHHHHHHHHHHhh
Confidence 1122222222 45666778877655443211 11223345666777666666543
No 197
>PRK10218 GTP-binding protein; Provisional
Probab=99.64 E-value=8.7e-15 Score=128.35 Aligned_cols=164 Identities=16% Similarity=0.172 Sum_probs=108.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc-ccc-------------cCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCC
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA-FKS-------------KAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS 83 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~-~~~-------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~ 83 (225)
...+|+++|+.++|||||+++|+.... +.. .....+.|.......+.+ ++..+++|||||+.++.
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-~~~~inliDTPG~~df~ 82 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-NDYRINIVDTPGHADFG 82 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-CCEEEEEEECCCcchhH
Confidence 457899999999999999999996432 111 112346677777777788 78899999999987652
Q ss_pred CCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh
Q 036158 84 ADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR 163 (225)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~ 163 (225)
.. +..+...+|++|+|+|+.++....+...+..+.+. ..|.++++||+|.... ..++.+.+
T Consensus 83 -------~~----v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~-----gip~IVviNKiD~~~a---~~~~vl~e 143 (607)
T PRK10218 83 -------GE----VERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY-----GLKPIVVINKVDRPGA---RPDWVVDQ 143 (607)
T ss_pred -------HH----HHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHc-----CCCEEEEEECcCCCCC---chhHHHHH
Confidence 11 22344567999999999766666666666655442 3688999999997643 33344333
Q ss_pred cCCchHHHHHHHcC-------CcEEEeeCCCccccccHH----------HHHHHHHHHHHHHHHcC
Q 036158 164 ECPKPLKEILQLCD-------NRCVLFDNKTKDTAKRTE----------QVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 164 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~----------~v~~l~~~i~~~~~~~~ 212 (225)
+.+++..++ .+++. .|+.++. ++..|++.|.+.++...
T Consensus 144 -----i~~l~~~l~~~~~~~~~PVi~------~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~ 198 (607)
T PRK10218 144 -----VFDLFVNLDATDEQLDFPIVY------ASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD 198 (607)
T ss_pred -----HHHHHhccCccccccCCCEEE------eEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence 344432221 12222 2333333 68899998888877653
No 198
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1.1e-14 Score=107.38 Aligned_cols=166 Identities=14% Similarity=0.159 Sum_probs=110.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEI 93 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~ 93 (225)
+....+|+++|..++||||||+.+..... .. ........+.....+.+ .++ .+.||||+|. +.+
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~f-d~-~YqATIGiDFlskt~~l-~d~~vrLQlWDTAGQ-----------ERF 84 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKF-DN-TYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQ-----------ERF 84 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhh-cc-cccceeeeEEEEEEEEE-cCcEEEEEEEecccH-----------HHH
Confidence 34458999999999999999999986553 22 12333333444444455 444 7899999994 567
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 172 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~ 172 (225)
+..+..+++++.++|+|+|+.++-+-+. ..+++.+....+.+ ...+++|.||.|+....+-+.++-. ..
T Consensus 85 rslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~-~viI~LVGnKtDL~dkrqvs~eEg~---------~k 154 (221)
T KOG0094|consen 85 RSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSD-DVIIFLVGNKTDLSDKRQVSIEEGE---------RK 154 (221)
T ss_pred hhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCC-ceEEEEEcccccccchhhhhHHHHH---------HH
Confidence 7788889999999999999986544443 34555444433332 2678889999999876533333221 22
Q ss_pred HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
.++.+. .++ .+|++.+.+|.+|+.+|...+.+.
T Consensus 155 Akel~a--~f~----etsak~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 155 AKELNA--EFI----ETSAKAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred HHHhCc--EEE----EecccCCCCHHHHHHHHHHhccCc
Confidence 233333 222 345667799999999998877654
No 199
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.64 E-value=2.3e-14 Score=113.37 Aligned_cols=162 Identities=16% Similarity=0.190 Sum_probs=94.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
.+|+++|..|+|||||++++++.... .. ..+++.+.....+.+ ++ ..+.||||+|..++. .+ .
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~-~~--y~pTi~d~~~k~~~i-~~~~~~l~I~Dt~G~~~~~--------~~---~ 65 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFE-EQ--YTPTIEDFHRKLYSI-RGEVYQLDILDTSGNHPFP--------AM---R 65 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCC-CC--CCCChhHhEEEEEEE-CCEEEEEEEEECCCChhhh--------HH---H
Confidence 37999999999999999999876532 11 112222222333444 34 478899999975431 11 1
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHh-------cccccccEEEEEecCCCCCCCcccHHHHhhhcCCchH
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLF-------GKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPL 169 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~-------~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~ 169 (225)
..+...+|++|+|+|++++-+-+. ..+++.+.+.. ......|+++|.||+|+....+...++ +
T Consensus 66 ~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~e---------i 136 (247)
T cd04143 66 RLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDE---------V 136 (247)
T ss_pred HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHH---------H
Confidence 224457899999999985432222 22334443321 011347999999999986432112221 2
Q ss_pred HHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 170 KEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
.+.+.... .+. ....|+.++.+++++++.|.++..-
T Consensus 137 ~~~~~~~~-~~~----~~evSAktg~gI~elf~~L~~~~~~ 172 (247)
T cd04143 137 EQLVGGDE-NCA----YFEVSAKKNSNLDEMFRALFSLAKL 172 (247)
T ss_pred HHHHHhcC-CCE----EEEEeCCCCCCHHHHHHHHHHHhcc
Confidence 33332111 111 1245666779999999999887643
No 200
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.63 E-value=3.3e-15 Score=132.90 Aligned_cols=143 Identities=13% Similarity=0.179 Sum_probs=94.5
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhCCcccccc-------------------------------CCCCCceeEEEEEEE
Q 036158 15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKSK-------------------------------AGSSGVTKTCEMQRT 63 (225)
Q Consensus 15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~-------------------------------~~~~~~t~~~~~~~~ 63 (225)
+.++.++|+++|++++|||||+|+|+........ ....+.|.+.....+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 4567789999999999999999999865432110 011345666666677
Q ss_pred EeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEE
Q 036158 64 MLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVV 143 (225)
Q Consensus 64 ~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv 143 (225)
++ ++..+.|+||||+.++ ...+. .....+|++++|+|+.......+.+.+..+... +. ++++++
T Consensus 100 ~~-~~~~~~liDtPG~~~f-------~~~~~----~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~---~~iivv 163 (632)
T PRK05506 100 AT-PKRKFIVADTPGHEQY-------TRNMV----TGASTADLAIILVDARKGVLTQTRRHSFIASLL-GI---RHVVLA 163 (632)
T ss_pred cc-CCceEEEEECCChHHH-------HHHHH----HHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CC---CeEEEE
Confidence 77 7889999999996422 12222 234577999999999867666555555555443 22 678899
Q ss_pred EecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158 144 FTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 178 (225)
Q Consensus 144 ~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (225)
+||+|........+++...+ +.+++...+.
T Consensus 164 vNK~D~~~~~~~~~~~i~~~-----i~~~~~~~~~ 193 (632)
T PRK05506 164 VNKMDLVDYDQEVFDEIVAD-----YRAFAAKLGL 193 (632)
T ss_pred EEecccccchhHHHHHHHHH-----HHHHHHHcCC
Confidence 99999865332234444344 5555555553
No 201
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.63 E-value=4.3e-15 Score=125.59 Aligned_cols=138 Identities=15% Similarity=0.170 Sum_probs=91.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccc-------------------------------cCCCCCceeEEEEEEEEeeCC
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKS-------------------------------KAGSSGVTKTCEMQRTMLKDG 68 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~ 68 (225)
++|+++|+.++|||||+++|+....... .....+.|.+.....+++ ++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~ 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DK 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CC
Confidence 4799999999999999999974432110 111345677887777888 77
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 036158 69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGD 148 (225)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D 148 (225)
..+.|+||||+.++ ...+. .....+|++++|+|+..+....+.+.+..+... +. +++++++||+|
T Consensus 80 ~~~~liDtPGh~~f-------~~~~~----~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~-~~---~~iivviNK~D 144 (406)
T TIGR02034 80 RKFIVADTPGHEQY-------TRNMA----TGASTADLAVLLVDARKGVLEQTRRHSYIASLL-GI---RHVVLAVNKMD 144 (406)
T ss_pred eEEEEEeCCCHHHH-------HHHHH----HHHhhCCEEEEEEECCCCCccccHHHHHHHHHc-CC---CcEEEEEEecc
Confidence 89999999997532 12222 234577999999999877766666666555542 22 57899999999
Q ss_pred CCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158 149 ELEDNDETLEDYLGRECPKPLKEILQLCDN 178 (225)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (225)
........+++...+ +..+++..+.
T Consensus 145 ~~~~~~~~~~~i~~~-----~~~~~~~~~~ 169 (406)
T TIGR02034 145 LVDYDEEVFENIKKD-----YLAFAEQLGF 169 (406)
T ss_pred cccchHHHHHHHHHH-----HHHHHHHcCC
Confidence 875432223333333 5555555443
No 202
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.63 E-value=3.6e-15 Score=111.87 Aligned_cols=161 Identities=17% Similarity=0.085 Sum_probs=92.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
++++++|.+|+|||||++++.+... ... ..+++.........+ ++ ..+.+|||||..... ...
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~-~~~--~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~~ 65 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGY-PTE--YVPTAFDNFSVVVLV-DGKPVRLQLCDTAGQDEFD-----------KLR 65 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCC--CCCceeeeeeEEEEE-CCEEEEEEEEECCCChhhc-----------ccc
Confidence 4799999999999999999987553 221 222222222223344 33 468899999975331 222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhc----CCchHHH
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE----CPKPLKE 171 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~----~~~~~~~ 171 (225)
..+...+|++|+|+|..++.+-.. ..++..+.... ...|+++|.||+|+.... .....+.... ..+....
T Consensus 66 ~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~ 141 (173)
T cd04130 66 PLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN---PKAPIILVGTQADLRTDV-NVLIQLARYGEKPVSQSRAKA 141 (173)
T ss_pred ccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhhccCh-hHHHHHhhcCCCCcCHHHHHH
Confidence 345678899999999975433322 22344444322 237999999999975432 1111111110 0011233
Q ss_pred HHHHcCC-cEEEeeCCCccccccHHHHHHHHHHHH
Q 036158 172 ILQLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVN 205 (225)
Q Consensus 172 ~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~ 205 (225)
+.+..+. .+ ...|+.++.+++++++.+.
T Consensus 142 ~a~~~~~~~~------~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 142 LAEKIGACEY------IECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHHHhCCCeE------EEEeCCCCCCHHHHHHHHH
Confidence 3333332 22 2455667799999998763
No 203
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=6.2e-15 Score=122.43 Aligned_cols=132 Identities=17% Similarity=0.190 Sum_probs=95.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
...+.|+++|++|+|||||+|+|...+...++ +.+++|++.-...+++ +|.++.|+||.|+-+. .++.+...=.+.
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVS-pv~GTTRDaiea~v~~-~G~~v~L~DTAGiRe~--~~~~iE~~gI~r 341 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVS-PVPGTTRDAIEAQVTV-NGVPVRLSDTAGIREE--SNDGIEALGIER 341 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeC-CCCCcchhhheeEeec-CCeEEEEEeccccccc--cCChhHHHhHHH
Confidence 34589999999999999999999999987775 4778899888888887 9999999999999872 222222222223
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc-------cccccEEEEEecCCCCCC
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK-------KISDYMIVVFTGGDELED 152 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~vv~~k~D~~~~ 152 (225)
.......+|++++|+|+....+.++..+.+.+...-.. ..+.+++++.||.|...+
T Consensus 342 A~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 342 ARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 33455678999999999655555555555555443111 123688899999997765
No 204
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.62 E-value=6.4e-15 Score=124.59 Aligned_cols=168 Identities=15% Similarity=0.173 Sum_probs=99.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcccc-ccCCCCCceeEEEEEEEE--------------e-----------eCCce
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFK-SKAGSSGVTKTCEMQRTM--------------L-----------KDGQV 70 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~--------------~-----------~~~~~ 70 (225)
.+.++|+++|+.++|||||+++|.+..... ......+.|.......+. . +.+..
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 457899999999999999999998653210 111122333333221111 0 01467
Q ss_pred EEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccccEEEEEecCCC
Q 036158 71 VNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRF-SEEEGAAIHILESLFGKKISDYMIVVFTGGDE 149 (225)
Q Consensus 71 ~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~ 149 (225)
+.+|||||+.++ ...+ ......+|++++|+|+++.. .....+.+..+.. ++. +++++++||+|+
T Consensus 82 i~liDtPGh~~f-------~~~~----~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~gi---~~iIVvvNK~Dl 146 (406)
T TIGR03680 82 VSFVDAPGHETL-------MATM----LSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-IGI---KNIVIVQNKIDL 146 (406)
T ss_pred EEEEECCCHHHH-------HHHH----HHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-cCC---CeEEEEEEcccc
Confidence 999999997432 2222 22334679999999998655 4445555554432 222 578999999998
Q ss_pred CCCCcccHHHHhhhcCCchHHHHHHHcC-CcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 150 LEDNDETLEDYLGRECPKPLKEILQLCD-NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
.... ...+...+ +.+++.... ..+. ..+.|+.++.++++|++.|...+..
T Consensus 147 ~~~~--~~~~~~~~-----i~~~l~~~~~~~~~----ii~vSA~~g~gi~~L~e~L~~~l~~ 197 (406)
T TIGR03680 147 VSKE--KALENYEE-----IKEFVKGTVAENAP----IIPVSALHNANIDALLEAIEKFIPT 197 (406)
T ss_pred CCHH--HHHHHHHH-----HHhhhhhcccCCCe----EEEEECCCCCChHHHHHHHHHhCCC
Confidence 6532 22222222 333333221 1111 2345666778999999999886653
No 205
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.62 E-value=4e-15 Score=115.88 Aligned_cols=136 Identities=19% Similarity=0.252 Sum_probs=87.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccc-----------------------------cccCCCCCceeEEEEEEEEeeCCceE
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAF-----------------------------KSKAGSSGVTKTCEMQRTMLKDGQVV 71 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~~~~~~~~~ 71 (225)
+|+++|+.++|||||+.+|+..... .......++|.......+.+ .+..+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence 5899999999999999998633210 01112356788888888888 88999
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccccEEEEE
Q 036158 72 NVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNR-------FSEEEGAAIHILESLFGKKISDYMIVVF 144 (225)
Q Consensus 72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~vv~ 144 (225)
.++||||+.++ ...+......+|++++|+|+.+. ......+.+..... .+ .+|+++++
T Consensus 80 ~liDtpG~~~~-----------~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~iiivv 144 (219)
T cd01883 80 TILDAPGHRDF-----------VPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLART-LG---VKQLIVAV 144 (219)
T ss_pred EEEECCChHHH-----------HHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHH-cC---CCeEEEEE
Confidence 99999996432 12222334567999999999752 22223333333322 22 26889999
Q ss_pred ecCCCCCC--CcccHHHHhhhcCCchHHHHHHHcC
Q 036158 145 TGGDELED--NDETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 145 ~k~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
||+|.... ....+++...+ ++..+...+
T Consensus 145 NK~Dl~~~~~~~~~~~~i~~~-----l~~~l~~~~ 174 (219)
T cd01883 145 NKMDDVTVNWSEERYDEIKKE-----LSPFLKKVG 174 (219)
T ss_pred EccccccccccHHHHHHHHHH-----HHHHHHHcC
Confidence 99998743 12234555444 555666554
No 206
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=9.7e-15 Score=122.87 Aligned_cols=164 Identities=16% Similarity=0.152 Sum_probs=118.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK--DGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
..+.|.++|+...|||||+-.|-+.++... ...+.|.+...+.+.++ ....++|+||||+..+ ..
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~--EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAF-----------t~ 70 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAF-----------TA 70 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccc--cCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHH-----------HH
Confidence 347899999999999999999999887433 35678999999999885 3479999999997633 22
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
+-..-..-+|.++||+++++.+-+.+.+.+..++.. ..|++|++||+|+.+..+.....-+++ ..=.-+.
T Consensus 71 mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a-----~vP~iVAiNKiDk~~~np~~v~~el~~-----~gl~~E~ 140 (509)
T COG0532 71 MRARGASVTDIAILVVAADDGVMPQTIEAINHAKAA-----GVPIVVAINKIDKPEANPDKVKQELQE-----YGLVPEE 140 (509)
T ss_pred HHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHC-----CCCEEEEEecccCCCCCHHHHHHHHHH-----cCCCHhh
Confidence 222334566999999999989988888877777764 489999999999986643332222222 0111233
Q ss_pred cCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158 176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~ 208 (225)
|+... ...+.||+++.++++|++.+.-..
T Consensus 141 ~gg~v----~~VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 141 WGGDV----IFVPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred cCCce----EEEEeeccCCCCHHHHHHHHHHHH
Confidence 34332 234567888999999999886443
No 207
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.62 E-value=2.5e-14 Score=125.75 Aligned_cols=154 Identities=18% Similarity=0.251 Sum_probs=98.9
Q ss_pred cCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCcc
Q 036158 26 GRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIH 105 (225)
Q Consensus 26 G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (225)
|.+|+|||||+|++++... .. ...+++|.+.....+.+ ++..+.++||||.++...... .+.+.+.. .....+|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v-~n~pG~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~s~--~e~v~~~~-l~~~~aD 74 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TV-GNWPGVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTFSL--EEEVARDY-LLNEKPD 74 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-ee-cCCCCeEEEEEEEEEEE-CCeEEEEEECCCccccCccch--HHHHHHHH-HhhcCCC
Confidence 8999999999999998874 22 34667788777777777 778899999999987543221 11222211 1234789
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeC
Q 036158 106 AVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDN 185 (225)
Q Consensus 106 ~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (225)
++++|+|++ .+.. . +....+... ...|+++|+||+|..+.. .... ..+++.+..+.++.
T Consensus 75 vvI~VvDat-~ler-~---l~l~~ql~~--~~~PiIIVlNK~Dl~~~~--~i~~--------d~~~L~~~lg~pvv---- 133 (591)
T TIGR00437 75 LVVNVVDAS-NLER-N---LYLTLQLLE--LGIPMILALNLVDEAEKK--GIRI--------DEEKLEERLGVPVV---- 133 (591)
T ss_pred EEEEEecCC-cchh-h---HHHHHHHHh--cCCCEEEEEehhHHHHhC--CChh--------hHHHHHHHcCCCEE----
Confidence 999999997 3322 2 222222221 248999999999975432 1111 12334444454433
Q ss_pred CCccccccHHHHHHHHHHHHHHH
Q 036158 186 KTKDTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 186 ~~~~~~~~~~~v~~l~~~i~~~~ 208 (225)
+.|+.++.+++++++.+.+..
T Consensus 134 --~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 134 --PTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred --EEECCCCCCHHHHHHHHHHHh
Confidence 445566789999999997653
No 208
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.62 E-value=8.8e-15 Score=128.59 Aligned_cols=164 Identities=21% Similarity=0.236 Sum_probs=103.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCcccccc-------------CCCCCceeEEEEEEEEee--CC--ceEEEEeCCCCCC
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSK-------------AGSSGVTKTCEMQRTMLK--DG--QVVNVIDTPGLFD 81 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~-------------~~~~~~t~~~~~~~~~~~--~~--~~~~liDtPG~~~ 81 (225)
..+|+++|+.++|||||+++|+........ ....+.|.......+.|. ++ ..++||||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 468999999999999999999865321110 012355655555555542 22 5789999999875
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHh
Q 036158 82 SSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL 161 (225)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~ 161 (225)
+. .. +..+...+|++|+|+|+.++.+..+...+....+ . ..|+++|+||+|.... ..++..
T Consensus 83 F~-------~~----v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~--~ipiIiViNKiDl~~~---~~~~~~ 143 (595)
T TIGR01393 83 FS-------YE----VSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---N--DLEIIPVINKIDLPSA---DPERVK 143 (595)
T ss_pred HH-------HH----HHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---c--CCCEEEEEECcCCCcc---CHHHHH
Confidence 41 12 2234456799999999986666665544433322 1 3689999999997533 222222
Q ss_pred hhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 162 GRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
.+ +.+. .+... ......||.++.++++|++.|.+.++...
T Consensus 144 ~e-----l~~~---lg~~~---~~vi~vSAktG~GI~~Lle~I~~~lp~p~ 183 (595)
T TIGR01393 144 KE-----IEEV---IGLDA---SEAILASAKTGIGIEEILEAIVKRVPPPK 183 (595)
T ss_pred HH-----HHHH---hCCCc---ceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence 22 2222 23211 11245677888999999999988876653
No 209
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.62 E-value=1.8e-14 Score=115.60 Aligned_cols=115 Identities=22% Similarity=0.261 Sum_probs=77.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCcccccc--CC--------------CCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKSK--AG--------------SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA 84 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~--~~--------------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (225)
+|+++|++|+|||||+|+|++....... .. ..+.|.......+.+ ++..+++|||||..++
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~~f-- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTPGYADF-- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECcCHHHH--
Confidence 5899999999999999999854321110 00 113344445556677 7889999999997532
Q ss_pred CcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158 85 DSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED 152 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~ 152 (225)
...+. .+...+|++++|+++...........++.+... ..|.++++||+|....
T Consensus 78 -----~~~~~----~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~-----~~p~iivvNK~D~~~~ 131 (268)
T cd04170 78 -----VGETR----AALRAADAALVVVSAQSGVEVGTEKLWEFADEA-----GIPRIIFINKMDRERA 131 (268)
T ss_pred -----HHHHH----HHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECCccCCC
Confidence 12222 233466999999999866666555666555432 3789999999997654
No 210
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.62 E-value=2.1e-14 Score=110.11 Aligned_cols=152 Identities=13% Similarity=0.011 Sum_probs=91.8
Q ss_pred EcCCCCCHHHHHHHHhCCccccccCCCCCceeEE--EEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcC
Q 036158 25 VGRTGNGKSATANSILGKRAFKSKAGSSGVTKTC--EMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTK 101 (225)
Q Consensus 25 ~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~ 101 (225)
+|..|+|||||+++++.... .. ....|... ....+.+. ....+.||||||...+ ......++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f-~~---~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~-----------~~l~~~~~ 65 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF-EK---KYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKF-----------GGLRDGYY 65 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCC-CC---CCCCceeEEEEEEEEEECCEEEEEEEEECCCchhh-----------hhhhHHHh
Confidence 59999999999999986543 11 11223322 22333331 2348999999996532 23334467
Q ss_pred CCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcE
Q 036158 102 DGIHAVLVVFSVRNRFSEEEG-AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 180 (225)
Q Consensus 102 ~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (225)
.++|++|+|+|+.++.+.... .++..+.+.. ...|+++|.||+|+.... ...+ ...+....+..+
T Consensus 66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~~~--v~~~---------~~~~~~~~~~~~ 131 (200)
T smart00176 66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDVKDRK--VKAK---------SITFHRKKNLQY 131 (200)
T ss_pred cCCCEEEEEEECCChHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccccc--CCHH---------HHHHHHHcCCEE
Confidence 788999999999855333322 2334444432 247999999999974321 1111 112222223222
Q ss_pred EEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 181 VLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 181 ~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
+ .+||..+.+++++++.|.+.+.+.
T Consensus 132 --~----e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 132 --Y----DISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred --E----EEeCCCCCCHHHHHHHHHHHHHhc
Confidence 2 356667799999999999777554
No 211
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.61 E-value=1.5e-14 Score=112.42 Aligned_cols=115 Identities=19% Similarity=0.271 Sum_probs=76.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCcccccc--------------CCCCCceeEEEEEEEEee---------CCceEEEEeC
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSK--------------AGSSGVTKTCEMQRTMLK---------DGQVVNVIDT 76 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~---------~~~~~~liDt 76 (225)
.+|+++|+.++|||||+.+|+........ ....+.|.......+.+. .+..+.+|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 37999999999999999999854421110 011233433333333342 1567999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 036158 77 PGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDEL 150 (225)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~ 150 (225)
||+.++. . ....+...+|++++|+|+..+.+..+...++..... ..|+++++||+|..
T Consensus 81 PG~~~f~-------~----~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~-----~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDFS-------S----EVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKE-----RVKPVLVINKIDRL 138 (222)
T ss_pred CCccccH-------H----HHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECCCcc
Confidence 9998652 1 222344567999999999877777666666555432 26899999999976
No 212
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.61 E-value=1.5e-14 Score=122.35 Aligned_cols=170 Identities=14% Similarity=0.181 Sum_probs=101.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCcc-ccccCCCCCceeEEEEEEEEee-------------------------CCc
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRA-FKSKAGSSGVTKTCEMQRTMLK-------------------------DGQ 69 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~-------------------------~~~ 69 (225)
.++.++|+++|+.++|||||+.+|.+... ........+.|.........+. ...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 45679999999999999999999976421 1111123345554433221110 025
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 036158 70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRF-SEEEGAAIHILESLFGKKISDYMIVVFTGGD 148 (225)
Q Consensus 70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D 148 (225)
.+.||||||+.+ +...+......+|++++|+|+.++. ...+.+.+..+.. .+ .+++++|+||+|
T Consensus 86 ~i~liDtPG~~~-----------f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~---i~~iiVVlNK~D 150 (411)
T PRK04000 86 RVSFVDAPGHET-----------LMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IG---IKNIVIVQNKID 150 (411)
T ss_pred EEEEEECCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cC---CCcEEEEEEeec
Confidence 799999999642 2222223334679999999998655 4555555555533 22 257899999999
Q ss_pred CCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 149 ELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
+.... .......+ +++++...... .....+.|+.++.++++|++.|.+.+.+
T Consensus 151 l~~~~--~~~~~~~~-----i~~~l~~~~~~---~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 151 LVSKE--RALENYEQ-----IKEFVKGTVAE---NAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred cccch--hHHHHHHH-----HHHHhccccCC---CCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 86542 22222222 33333221100 0112345667779999999999887654
No 213
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=8.3e-14 Score=104.21 Aligned_cols=165 Identities=18% Similarity=0.136 Sum_probs=113.7
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHH
Q 036158 15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKE 92 (225)
Q Consensus 15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~ 92 (225)
+....++|+++|.+|+|||.++-.+........ .......+.....+++ ++. .+.+|||.|.. .
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~--~~sTiGIDFk~kti~l-~g~~i~lQiWDtaGQe-----------r 73 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTS--FISTIGIDFKIKTIEL-DGKKIKLQIWDTAGQE-----------R 73 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCC--ccceEEEEEEEEEEEe-CCeEEEEEEEEcccch-----------h
Confidence 556779999999999999999988886654222 1223344555556666 444 78999999954 4
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158 93 IVKCIGMTKDGIHAVLVVFSVRNRFSEE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 171 (225)
Q Consensus 93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (225)
+......++.+++++++|+|+...-+-+ -..+++.+.+.-.. ..+.++|.||+|........ .+.-+.
T Consensus 74 f~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~--~v~~~LvGNK~D~~~~R~V~---------~e~ge~ 142 (207)
T KOG0078|consen 74 FRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASD--DVVKILVGNKCDLEEKRQVS---------KERGEA 142 (207)
T ss_pred HHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCC--CCcEEEeecccccccccccc---------HHHHHH
Confidence 5556667888999999999997443322 34477778776444 48999999999976533111 122456
Q ss_pred HHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 172 ILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
+....|..++ .+||+.+.+|.+.+..+.+-+.+
T Consensus 143 lA~e~G~~F~------EtSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 143 LAREYGIKFF------ETSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred HHHHhCCeEE------EccccCCCCHHHHHHHHHHHHHh
Confidence 6667666544 34566678999988888776664
No 214
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.61 E-value=6.3e-15 Score=116.80 Aligned_cols=96 Identities=17% Similarity=0.257 Sum_probs=73.5
Q ss_pred CCCCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHH
Q 036158 12 PTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSK 91 (225)
Q Consensus 12 ~~~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~ 91 (225)
+.-.....-+++++|.+++|||||+|.|++... ....++.+|..+-....++ .+-.+.++|+||+.+.........+
T Consensus 56 f~V~KsGda~v~lVGfPsvGKStLL~~LTnt~s--eva~y~FTTl~~VPG~l~Y-~ga~IQild~Pgii~gas~g~grG~ 132 (365)
T COG1163 56 FAVKKSGDATVALVGFPSVGKSTLLNKLTNTKS--EVADYPFTTLEPVPGMLEY-KGAQIQLLDLPGIIEGASSGRGRGR 132 (365)
T ss_pred ceEeccCCeEEEEEcCCCccHHHHHHHHhCCCc--cccccCceecccccceEee-cCceEEEEcCcccccCcccCCCCcc
Confidence 344444558999999999999999999999885 3345777888888878887 8999999999999887655443333
Q ss_pred HHHHHHhhcCCCccEEEEEEeCC
Q 036158 92 EIVKCIGMTKDGIHAVLVVFSVR 114 (225)
Q Consensus 92 ~~~~~~~~~~~~~~~ii~v~~~~ 114 (225)
++. ...+.+|++++|+|+.
T Consensus 133 ~vl----sv~R~ADlIiiVld~~ 151 (365)
T COG1163 133 QVL----SVARNADLIIIVLDVF 151 (365)
T ss_pred eee----eeeccCCEEEEEEecC
Confidence 332 3456779999999886
No 215
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.61 E-value=7.6e-15 Score=125.15 Aligned_cols=142 Identities=18% Similarity=0.205 Sum_probs=96.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccc-----------------------------cccCCCCCceeEEEEEEEEee
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAF-----------------------------KSKAGSSGVTKTCEMQRTMLK 66 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~~~~ 66 (225)
.++.++|+++|+.++|||||+.+|+..... .......+.|.+.....+++
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~- 82 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET- 82 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc-
Confidence 467799999999999999999988742110 01112356787777777887
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-------CHHHHHHHHHHHHHhccccccc
Q 036158 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRF-------SEEEGAAIHILESLFGKKISDY 139 (225)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~ 139 (225)
++..++|+||||+.++ ...+......+|++++|+|+..+. ....++.+..+... +- ++
T Consensus 83 ~~~~i~lIDtPGh~~f-----------~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~-gi---~~ 147 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDF-----------IKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL-GV---KQ 147 (446)
T ss_pred CCeEEEEEECCChHHH-----------HHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc-CC---Ce
Confidence 7889999999997643 222223345779999999997654 24555666655542 21 45
Q ss_pred EEEEEecCCCCC--CCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158 140 MIVVFTGGDELE--DNDETLEDYLGRECPKPLKEILQLCDN 178 (225)
Q Consensus 140 ~~vv~~k~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (225)
+++++||+|... ..+..+++...+ +++.+...+.
T Consensus 148 iiv~vNKmD~~~~~~~~~~~~~i~~~-----i~~~l~~~g~ 183 (446)
T PTZ00141 148 MIVCINKMDDKTVNYSQERYDEIKKE-----VSAYLKKVGY 183 (446)
T ss_pred EEEEEEccccccchhhHHHHHHHHHH-----HHHHHHhcCC
Confidence 789999999432 223356666666 7777776654
No 216
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.61 E-value=5e-14 Score=110.15 Aligned_cols=132 Identities=16% Similarity=0.196 Sum_probs=83.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCC--------------------------------------------
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSS-------------------------------------------- 52 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~-------------------------------------------- 52 (225)
-..+.|+|+|++|+||||++++|.|...++...+..
T Consensus 24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 345789999999999999999999975332211100
Q ss_pred -----CceeEEEEEEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHHHHHHhhcCC-CccEEEEEEeCCCCCCHHH-HH
Q 036158 53 -----GVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA--DSEFVSKEIVKCIGMTKD-GIHAVLVVFSVRNRFSEEE-GA 123 (225)
Q Consensus 53 -----~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~ii~v~~~~~~~~~~~-~~ 123 (225)
+.+..+-...+..|....++|+||||+..... ........+.+.+..+.. ..+++++|+++...+...+ .+
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ 183 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK 183 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence 00011111122333445899999999974421 123344556666666655 3468999999876666655 35
Q ss_pred HHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158 124 AIHILESLFGKKISDYMIVVFTGGDELEDN 153 (225)
Q Consensus 124 ~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~ 153 (225)
+.+.+... ..++++|+||+|.....
T Consensus 184 ia~~ld~~-----~~rti~ViTK~D~~~~~ 208 (240)
T smart00053 184 LAKEVDPQ-----GERTIGVITKLDLMDEG 208 (240)
T ss_pred HHHHHHHc-----CCcEEEEEECCCCCCcc
Confidence 55555442 37999999999988654
No 217
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.60 E-value=2.4e-14 Score=102.23 Aligned_cols=121 Identities=15% Similarity=0.105 Sum_probs=77.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
.-.++|+++|.+|+|||||+-+++....-+..+...+.........+.- ...++.||||+|.. .++..
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg-~~~KlaiWDTAGqE-----------rFRtL 76 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDG-KRLKLAIWDTAGQE-----------RFRTL 76 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcC-ceEEEEEEeccchH-----------hhhcc
Confidence 4458999999999999999999986654322222233333333333322 33489999999954 45556
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccccEEEEEecCCCC
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEG-AAIHILESLFGKKISDYMIVVFTGGDEL 150 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~vv~~k~D~~ 150 (225)
..++++++.++|+|.|++.+-+-... .++..+..+... ...-.++|.||+|+-
T Consensus 77 TpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn-~diikmlVgNKiDke 130 (209)
T KOG0080|consen 77 TPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTN-PDIIKMLVGNKIDKE 130 (209)
T ss_pred CHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCC-ccHhHhhhcccccch
Confidence 66789999999999999855332222 233333333222 223457899999953
No 218
>PLN03126 Elongation factor Tu; Provisional
Probab=99.60 E-value=8e-14 Score=119.46 Aligned_cols=140 Identities=18% Similarity=0.240 Sum_probs=96.1
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhCCccc--------------cccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCC
Q 036158 15 PSNGERNLVLVGRTGNGKSATANSILGKRAF--------------KSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80 (225)
Q Consensus 15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~ 80 (225)
..++.++|+++|+.++|||||+++|++.... .......+.|.++....+.+ ++..+.|+||||+.
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtPGh~ 155 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHA 155 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECCCHH
Confidence 3577899999999999999999999953211 01122356677776666777 78899999999975
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc-EEEEEecCCCCCCCcccHHH
Q 036158 81 DSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLED 159 (225)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~vv~~k~D~~~~~~~~~~~ 159 (225)
++ ...+. .....+|++++|+|+.+.....+++.+..+... + .| +++++||+|..... ...+.
T Consensus 156 ~f-------~~~~~----~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~-g----i~~iIvvvNK~Dl~~~~-~~~~~ 218 (478)
T PLN03126 156 DY-------VKNMI----TGAAQMDGAILVVSGADGPMPQTKEHILLAKQV-G----VPNMVVFLNKQDQVDDE-ELLEL 218 (478)
T ss_pred HH-------HHHHH----HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-C----CCeEEEEEecccccCHH-HHHHH
Confidence 32 22222 233467999999999877777777777766553 2 44 78899999986432 12333
Q ss_pred HhhhcCCchHHHHHHHcC
Q 036158 160 YLGRECPKPLKEILQLCD 177 (225)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~ 177 (225)
...+ ++++++.++
T Consensus 219 i~~~-----i~~~l~~~g 231 (478)
T PLN03126 219 VELE-----VRELLSSYE 231 (478)
T ss_pred HHHH-----HHHHHHhcC
Confidence 3333 777777764
No 219
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.60 E-value=1.1e-13 Score=107.60 Aligned_cols=165 Identities=14% Similarity=0.068 Sum_probs=92.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
.+|+|+|..|+|||||++++.+.... ... .++........+.+ ++ ..+.||||+|...+ ....
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~-~~y--~pTi~~~~~~~~~~-~~~~v~L~iwDt~G~e~~-----------~~l~ 66 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYP-GSY--VPTVFENYTASFEI-DKRRIELNMWDTSGSSYY-----------DNVR 66 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-Ccc--CCccccceEEEEEE-CCEEEEEEEEeCCCcHHH-----------HHHh
Confidence 68999999999999999999976532 211 11111111123333 33 36889999996432 2223
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh----cCCchHHH
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR----ECPKPLKE 171 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~----~~~~~~~~ 171 (225)
..++..+|++|+|+|+.++.+-... .+...+.... ...|+++|.||+|+..+. .......+. ...+...+
T Consensus 67 ~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~---~~~piiLVgnK~DL~~~~-~~~~~~~~~~~~pIs~e~g~~ 142 (222)
T cd04173 67 PLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC---PNAKVVLVGCKLDMRTDL-ATLRELSKQRLIPVTHEQGTV 142 (222)
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEECcccccch-hhhhhhhhccCCccCHHHHHH
Confidence 3467899999999999854322221 1222232222 247999999999976532 111111110 00112334
Q ss_pred HHHHcCC-cEEEeeCCCccccccHHH-HHHHHHHHHHHHH
Q 036158 172 ILQLCDN-RCVLFDNKTKDTAKRTEQ-VGKLLSLVNSVIV 209 (225)
Q Consensus 172 ~~~~~~~-~~~~~~~~~~~~~~~~~~-v~~l~~~i~~~~~ 209 (225)
+.+..+. .|+ .+||.++.+ +++++.......-
T Consensus 143 ~ak~~~~~~y~------E~SAk~~~~~V~~~F~~~~~~~~ 176 (222)
T cd04173 143 LAKQVGAVSYV------ECSSRSSERSVRDVFHVATVASL 176 (222)
T ss_pred HHHHcCCCEEE------EcCCCcCCcCHHHHHHHHHHHHH
Confidence 4444442 222 334454454 9999887776543
No 220
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.60 E-value=3.3e-14 Score=124.70 Aligned_cols=115 Identities=18% Similarity=0.226 Sum_probs=74.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-----------------CCceEEEEeCCCCC
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-----------------DGQVVNVIDTPGLF 80 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~liDtPG~~ 80 (225)
..+.|+++|++|+|||||+|+|.+....... ..+.|.+.......++ .-..++||||||+.
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~--~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKE--AGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCC--CCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 3478999999999999999999887643222 2222222211111110 00137899999986
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 036158 81 DSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDEL 150 (225)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~ 150 (225)
++. .........+|++++|+|+++.....+.+.+..+.. ...|+++++||+|..
T Consensus 83 ~f~-----------~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~-----~~vpiIvviNK~D~~ 136 (586)
T PRK04004 83 AFT-----------NLRKRGGALADIAILVVDINEGFQPQTIEAINILKR-----RKTPFVVAANKIDRI 136 (586)
T ss_pred HHH-----------HHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH-----cCCCEEEEEECcCCc
Confidence 441 112233456799999999987666666666665543 237899999999975
No 221
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.60 E-value=3.5e-14 Score=124.94 Aligned_cols=166 Identities=19% Similarity=0.205 Sum_probs=104.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccc-------------cCCCCCceeEEEEEEEEee----CCceEEEEeCCCC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKS-------------KAGSSGVTKTCEMQRTMLK----DGQVVNVIDTPGL 79 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~-------------~~~~~~~t~~~~~~~~~~~----~~~~~~liDtPG~ 79 (225)
....+|+++|+.++|||||+++|+....... .....+.|.......+.|. .+..++||||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 3457999999999999999999986432110 0112345555544455542 1457999999998
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHH
Q 036158 80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLED 159 (225)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~ 159 (225)
.++. ..+. .+...+|++|+|+|+.++....+...+..+.+ . ..|+++|+||+|.... ..+.
T Consensus 85 ~dF~-------~~v~----~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~---~--~lpiIvViNKiDl~~a---~~~~ 145 (600)
T PRK05433 85 VDFS-------YEVS----RSLAACEGALLVVDASQGVEAQTLANVYLALE---N--DLEIIPVLNKIDLPAA---DPER 145 (600)
T ss_pred HHHH-------HHHH----HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---C--CCCEEEEEECCCCCcc---cHHH
Confidence 7642 2222 23446699999999986766665555444332 1 3689999999997543 2222
Q ss_pred HhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 160 YLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
...+ +.+. .+... ......|+.++.++++|++.|.+.++...
T Consensus 146 v~~e-----i~~~---lg~~~---~~vi~iSAktG~GI~~Ll~~I~~~lp~P~ 187 (600)
T PRK05433 146 VKQE-----IEDV---IGIDA---SDAVLVSAKTGIGIEEVLEAIVERIPPPK 187 (600)
T ss_pred HHHH-----HHHH---hCCCc---ceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence 2222 2222 22210 01235577788999999999988887653
No 222
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=3.1e-14 Score=119.57 Aligned_cols=162 Identities=14% Similarity=0.127 Sum_probs=117.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
...+.|-++|+...|||||+.+|-+..+... ...+.|.+...+.+.++.|..++|+||||+- .+..+
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~--E~GGITQhIGAF~V~~p~G~~iTFLDTPGHa-----------AF~aM 217 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAG--EAGGITQHIGAFTVTLPSGKSITFLDTPGHA-----------AFSAM 217 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehh--hcCCccceeceEEEecCCCCEEEEecCCcHH-----------HHHHH
Confidence 3468899999999999999999998887444 3567899999999999999999999999975 23344
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
-..-....|++++|+.+++++-+.+.+.+...+. ...|++|++||+|+.+. ..+....+... .--..+.+
T Consensus 218 RaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~-----A~VpiVvAinKiDkp~a---~pekv~~eL~~--~gi~~E~~ 287 (683)
T KOG1145|consen 218 RARGANVTDIVVLVVAADDGVMPQTLEAIKHAKS-----ANVPIVVAINKIDKPGA---NPEKVKRELLS--QGIVVEDL 287 (683)
T ss_pred HhccCccccEEEEEEEccCCccHhHHHHHHHHHh-----cCCCEEEEEeccCCCCC---CHHHHHHHHHH--cCccHHHc
Confidence 3445567799999999998887766555554444 34899999999997755 44444333000 01124566
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHH
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVN 205 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~ 205 (225)
|...-. .+.||.++.+++.|.+.+.
T Consensus 288 GGdVQv----ipiSAl~g~nl~~L~eail 312 (683)
T KOG1145|consen 288 GGDVQV----IPISALTGENLDLLEEAIL 312 (683)
T ss_pred CCceeE----EEeecccCCChHHHHHHHH
Confidence 664433 3446667789998888775
No 223
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.59 E-value=4.7e-14 Score=104.34 Aligned_cols=153 Identities=22% Similarity=0.221 Sum_probs=89.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
++|+++|.+|+|||||+++++....... ..+ +.......+.+ ++ ..+.+|||+|....
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~-~~~---~~~~~~~~i~~-~~~~~~l~i~D~~g~~~~--------------- 60 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQL-ESP---EGGRFKKEVLV-DGQSHLLLIRDEGGAPDA--------------- 60 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCC-CCC---CccceEEEEEE-CCEEEEEEEEECCCCCch---------------
Confidence 4799999999999999998876543211 111 11111233444 44 36889999997521
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
.+...+|++++|+|.+++-+-.. ..+++.+..... ....|+++|.||.|+.......+... ..+++.+..
T Consensus 61 -~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~~~~~~v~~~-------~~~~~~~~~ 131 (158)
T cd04103 61 -QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRN-ISEIPLILVGTQDAISESNPRVIDDA-------RARQLCADM 131 (158)
T ss_pred -hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeeHHHhhhcCCcccCHH-------HHHHHHHHh
Confidence 12346799999999985544443 334444444321 12369999999988642211111111 122233222
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNS 206 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~ 206 (225)
+ .+.++ .+||+++.+++++++.+.+
T Consensus 132 ~-~~~~~----e~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 132 K-RCSYY----ETCATYGLNVERVFQEAAQ 156 (158)
T ss_pred C-CCcEE----EEecCCCCCHHHHHHHHHh
Confidence 1 12222 4566778999999988754
No 224
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.59 E-value=1.2e-13 Score=107.31 Aligned_cols=163 Identities=15% Similarity=0.026 Sum_probs=92.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEE--EEe-eCCceEEEEeCCCCCCCCCCcHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQR--TML-KDGQVVNVIDTPGLFDSSADSEFVSKE 92 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~--~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~ 92 (225)
....++|+++|++|+|||||++.++....... ...|....... +.. .....+.+|||||...+
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~---------- 71 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKK----YIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKF---------- 71 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCC----CCCccceEEEEEEEEECCeEEEEEEEECCCchhh----------
Confidence 45568999999999999999976554332111 11222222222 222 12347899999996432
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158 93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 171 (225)
Q Consensus 93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (225)
......+...++++++|+|..++.+-.. ..++..+.... ...|++++.||+|..... ...+ ...
T Consensus 72 -~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~i~lv~nK~Dl~~~~--~~~~---------~~~ 136 (215)
T PTZ00132 72 -GGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC---ENIPIVLVGNKVDVKDRQ--VKAR---------QIT 136 (215)
T ss_pred -hhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccCcccc--CCHH---------HHH
Confidence 1111234456799999999975433322 22333333332 236888999999975321 1011 112
Q ss_pred HHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158 172 ILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG 213 (225)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~ 213 (225)
+.+..+..++ ..|+.++.++++.+..|.+.+..+..
T Consensus 137 ~~~~~~~~~~------e~Sa~~~~~v~~~f~~ia~~l~~~p~ 172 (215)
T PTZ00132 137 FHRKKNLQYY------DISAKSNYNFEKPFLWLARRLTNDPN 172 (215)
T ss_pred HHHHcCCEEE------EEeCCCCCCHHHHHHHHHHHHhhccc
Confidence 3333333332 33555667888888888777665533
No 225
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.59 E-value=7.9e-14 Score=107.32 Aligned_cols=117 Identities=13% Similarity=0.182 Sum_probs=71.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee---CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK---DGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
++|+++|++|+|||||++.|........ .++. .......... .+..+.||||||+... +..
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t---~~s~--~~~~~~~~~~~~~~~~~~~l~D~pG~~~~-----------~~~ 64 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRST---VTSI--EPNVATFILNSEGKGKKFRLVDVPGHPKL-----------RDK 64 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCc---cCcE--eecceEEEeecCCCCceEEEEECCCCHHH-----------HHH
Confidence 4699999999999999999997753222 1111 2222222221 3568999999997632 222
Q ss_pred HhhcCCCc-cEEEEEEeCCCCCCHHHHHHHHHHHHHhcc----cccccEEEEEecCCCCCCC
Q 036158 97 IGMTKDGI-HAVLVVFSVRNRFSEEEGAAIHILESLFGK----KISDYMIVVFTGGDELEDN 153 (225)
Q Consensus 97 ~~~~~~~~-~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~vv~~k~D~~~~~ 153 (225)
+..++..+ +++|||+|+.+. ........+.+..++.. ....|++++.||+|+....
T Consensus 65 ~~~~~~~~~~~vV~VvD~~~~-~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~ 125 (203)
T cd04105 65 LLETLKNSAKGIVFVVDSATF-QKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAK 125 (203)
T ss_pred HHHHHhccCCEEEEEEECccc-hhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccC
Confidence 22334455 999999999743 12222223333322211 1248999999999987553
No 226
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.59 E-value=7.7e-14 Score=100.99 Aligned_cols=153 Identities=18% Similarity=0.158 Sum_probs=87.1
Q ss_pred EEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee---CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158 24 LVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK---DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT 100 (225)
Q Consensus 24 v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (225)
++|++|+|||||+|+|.+...... ....|. ......... .+..+.+|||||..+.. ......
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~---~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-----------~~~~~~ 65 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPE---EYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFR-----------SLRRLY 65 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCc---ccccch-hheeeEEEEECCEEEEEEEEecCChHHHH-----------hHHHHH
Confidence 579999999999999998775211 112222 333333331 25679999999976431 111335
Q ss_pred CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcE
Q 036158 101 KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 180 (225)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (225)
...+|++++|++.....+......+.............|+++++||+|..... ...... ............+
T Consensus 66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~--~~~~~~------~~~~~~~~~~~~~ 137 (157)
T cd00882 66 YRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEER--VVSEEE------LAEQLAKELGVPY 137 (157)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccccc--chHHHH------HHHHHHhhcCCcE
Confidence 56789999999997443333322220111111122358999999999977553 111110 0122333334444
Q ss_pred EEeeCCCccccccHHHHHHHHHHHH
Q 036158 181 VLFDNKTKDTAKRTEQVGKLLSLVN 205 (225)
Q Consensus 181 ~~~~~~~~~~~~~~~~v~~l~~~i~ 205 (225)
+..+. ..+.++.+++++|.
T Consensus 138 ~~~s~------~~~~~i~~~~~~l~ 156 (157)
T cd00882 138 FETSA------KTGENVEELFEELA 156 (157)
T ss_pred EEEec------CCCCChHHHHHHHh
Confidence 44433 34468888888774
No 227
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.59 E-value=7.5e-15 Score=103.25 Aligned_cols=116 Identities=19% Similarity=0.213 Sum_probs=69.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCcccc--ccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFK--SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
+|+|+|.+|+|||||+++|.+..... ........+.......... ....+.+||++|.......... .
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~-------~-- 70 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDG-DRQSLQFWDFGGQEEFYSQHQF-------F-- 70 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETT-EEEEEEEEEESSSHCHHCTSHH-------H--
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecC-CceEEEEEecCccceecccccc-------h--
Confidence 68999999999999999999877541 1111223333333333332 2335889999997533211111 1
Q ss_pred hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCC
Q 036158 99 MTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGD 148 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D 148 (225)
...+|++++|+|..+..+-.. .+++.++...-+.....|+++|.||.|
T Consensus 71 --~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 71 --LKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp --HHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred --hhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 224599999999974432232 234556666543333489999999998
No 228
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.58 E-value=7.4e-15 Score=113.93 Aligned_cols=114 Identities=18% Similarity=0.238 Sum_probs=72.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCcccccc-----------------CCCCCceeEEEEEEEEee----CCceEEEEeCCCC
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKSK-----------------AGSSGVTKTCEMQRTMLK----DGQVVNVIDTPGL 79 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~-----------------~~~~~~t~~~~~~~~~~~----~~~~~~liDtPG~ 79 (225)
+|+++|+.|+|||||+++|+........ ....+.|.......+.+. ....+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999864422110 011223333333334332 2357999999998
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 036158 80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDEL 150 (225)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~ 150 (225)
.++. .. .......+|++++|+|+.+..+....+.++.+.. . ..|+++|+||+|..
T Consensus 82 ~~f~-------~~----~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~---~--~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFM-------DE----VAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL---E--GLPIVLVINKIDRL 136 (213)
T ss_pred cchH-------HH----HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH---c--CCCEEEEEECcccC
Confidence 7542 11 1223346699999999976665555444443322 2 27999999999975
No 229
>PRK00007 elongation factor G; Reviewed
Probab=99.58 E-value=5.4e-14 Score=126.18 Aligned_cols=120 Identities=18% Similarity=0.222 Sum_probs=89.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCcccc-----cc-----------CCCCCceeEEEEEEEEeeCCceEEEEeCCCC
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFK-----SK-----------AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~-----~~-----------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (225)
.....+|+++|+.|+|||||+|+|+...... .. ....+.|.......+.| .+..++|+||||+
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~~~~~~liDTPG~ 85 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KDHRINIIDTPGH 85 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-CCeEEEEEeCCCc
Confidence 4456899999999999999999997322110 00 02456788777788888 7899999999998
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158 80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED 152 (225)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~ 152 (225)
.++. .++. .....+|++++|+|+.......+...+..+.+. ..|+++++||+|....
T Consensus 86 ~~f~-------~ev~----~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~-----~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 86 VDFT-------IEVE----RSLRVLDGAVAVFDAVGGVEPQSETVWRQADKY-----KVPRIAFVNKMDRTGA 142 (693)
T ss_pred HHHH-------HHHH----HHHHHcCEEEEEEECCCCcchhhHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence 6431 1222 333455999999999878888888888877663 3688999999998754
No 230
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.57 E-value=1.9e-14 Score=107.39 Aligned_cols=115 Identities=17% Similarity=0.244 Sum_probs=70.3
Q ss_pred EEEEcCCCCCHHHHHHHHhCCccccccCCCCCc-eeEEE-----------------------------------------
Q 036158 22 LVLVGRTGNGKSATANSILGKRAFKSKAGSSGV-TKTCE----------------------------------------- 59 (225)
Q Consensus 22 i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~-t~~~~----------------------------------------- 59 (225)
|+|+|..++|||||||+|+|....+....+... .+...
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 789999999999999999998865543321110 00000
Q ss_pred -----------EEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHH
Q 036158 60 -----------MQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHIL 128 (225)
Q Consensus 60 -----------~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l 128 (225)
......+...++.|+||||+.+......++. ..+.+.+|++|+|+++...++..+...+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~-------~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~ 153 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTEIT-------EEYLPKADVVIFVVDANQDLTESDMEFLKQM 153 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSHHH-------HHHHSTTEEEEEEEETTSTGGGHHHHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhHHHH-------HHhhccCCEEEEEeccCcccchHHHHHHHHH
Confidence 0001111334799999999986433333222 2233677999999999866666665555444
Q ss_pred HHHhcccccccEEEEEecC
Q 036158 129 ESLFGKKISDYMIVVFTGG 147 (225)
Q Consensus 129 ~~~~~~~~~~~~~vv~~k~ 147 (225)
.... ...+++|+||+
T Consensus 154 ~~~~----~~~~i~V~nk~ 168 (168)
T PF00350_consen 154 LDPD----KSRTIFVLNKA 168 (168)
T ss_dssp HTTT----CSSEEEEEE-G
T ss_pred hcCC----CCeEEEEEcCC
Confidence 4321 24689999984
No 231
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.57 E-value=1.1e-13 Score=124.29 Aligned_cols=120 Identities=19% Similarity=0.206 Sum_probs=88.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCcccc-----cc-----------CCCCCceeEEEEEEEEeeCCceEEEEeCCCC
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFK-----SK-----------AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~-----~~-----------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (225)
.....+|+++|+.|+|||||+|+|+...... .. ....+.|.......+.+ ++..+++|||||+
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~~~~i~liDTPG~ 85 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-KGHRINIIDTPGH 85 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-CCeEEEEEECCCC
Confidence 4557899999999999999999997533211 00 01346777788888888 8899999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158 80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED 152 (225)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~ 152 (225)
.++. ..+. .+...+|++++|+|+.+.....+...+..+.+. ..|+++++||+|....
T Consensus 86 ~~~~-------~~~~----~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-----~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 86 VDFT-------VEVE----RSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY-----EVPRIAFVNKMDKTGA 142 (689)
T ss_pred cchh-------HHHH----HHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence 8642 1122 234456999999999877777766677665542 3789999999998754
No 232
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.57 E-value=3.4e-13 Score=102.50 Aligned_cols=168 Identities=17% Similarity=0.116 Sum_probs=94.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
.+|+|+|++|+|||||++++........ . ..+........+.+ .+ ..+.+|||||........
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~-~--~~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~----------- 66 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEE-Y--HPTVFENYVTDCRV-DGKPVQLALWDTAGQEEYERLR----------- 66 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc-c--CCcccceEEEEEEE-CCEEEEEEEEECCCChhccccc-----------
Confidence 5899999999999999999985443211 1 11111111223333 33 357899999975432110
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcC--CchHHHHH
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGREC--PKPLKEIL 173 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~--~~~~~~~~ 173 (225)
......+|++++|++.+..-+... ..++..+....+ ..|+++|.||+|+.... ...++...... ......+.
T Consensus 67 ~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~---~~piilvgnK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~ 142 (187)
T cd04129 67 PLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP---NVPVILVGLKKDLRQDA-VAKEEYRTQRFVPIQQGKRVA 142 (187)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhhhCc-ccccccccCCcCCHHHHHHHH
Confidence 123457899999999974322222 124445544332 38999999999975422 01111000000 01122333
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
+..+.. . ....|++++.+++++++.+.+.....
T Consensus 143 ~~~~~~-~----~~e~Sa~~~~~v~~~f~~l~~~~~~~ 175 (187)
T cd04129 143 KEIGAK-K----YMECSALTGEGVDDVFEAATRAALLV 175 (187)
T ss_pred HHhCCc-E----EEEccCCCCCCHHHHHHHHHHHHhcc
Confidence 333321 1 12456777899999999998665443
No 233
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.57 E-value=8.4e-14 Score=108.26 Aligned_cols=160 Identities=16% Similarity=0.141 Sum_probs=91.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT 100 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (225)
+|+++|+.||||||+.+.+++...... ...-+.|.......+...+...+.+||+||..+...+.-. ......
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~d-T~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~------~~~~~i 73 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRD-TLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFN------SQREEI 73 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGG-GGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHT------CCHHHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchh-ccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccccc------ccHHHH
Confidence 689999999999999999997654322 1244567777777776546669999999999866432100 000112
Q ss_pred CCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC-
Q 036158 101 KDGIHAVLVVFSVR-NRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN- 178 (225)
Q Consensus 101 ~~~~~~ii~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 178 (225)
...++++|||+|+. +.+..+-..+...+...........+.|.+.|+|.+... .-.+.... ..+.+.+.+...+.
T Consensus 74 f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~--~r~~~~~~-~~~~i~~~~~~~~~~ 150 (232)
T PF04670_consen 74 FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSED--EREEIFRD-IQQRIRDELEDLGIE 150 (232)
T ss_dssp HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HH--HHHHHHHH-HHHHHHHHHHHTT-T
T ss_pred HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHH--HHHHHHHH-HHHHHHHHhhhcccc
Confidence 45779999999997 333333233334444433334457899999999987653 22222222 22335555555553
Q ss_pred cEEEeeCCCccc
Q 036158 179 RCVLFDNKTKDT 190 (225)
Q Consensus 179 ~~~~~~~~~~~~ 190 (225)
+...|.++.++.
T Consensus 151 ~~~~~~TSI~D~ 162 (232)
T PF04670_consen 151 DITFFLTSIWDE 162 (232)
T ss_dssp SEEEEEE-TTST
T ss_pred ceEEEeccCcCc
Confidence 367777777763
No 234
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.56 E-value=1.4e-13 Score=101.85 Aligned_cols=156 Identities=18% Similarity=0.200 Sum_probs=93.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
+|+++|..|+|||||++++.+.... ... .+....+.....+.. ++. .+.+||++|.... ..+. .
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~-~~~-~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~--------~~~~---~ 66 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFP-ENY-IPTIGIDSYSKEVSI-DGKPVNLEIWDTSGQERF--------DSLR---D 66 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTT-SSS-ETTSSEEEEEEEEEE-TTEEEEEEEEEETTSGGG--------HHHH---H
T ss_pred CEEEECCCCCCHHHHHHHHHhhccc-ccc-ccccccccccccccc-cccccccccccccccccc--------cccc---c
Confidence 6899999999999999999976532 211 112112333333444 333 6999999996422 1111 2
Q ss_pred hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158 99 MTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
.....+|++|+|++.+++-+-.. ..++..+....+ ...|++++.||.|......-..+ ..+++....+
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~--~~~~iivvg~K~D~~~~~~v~~~---------~~~~~~~~~~ 135 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP--EDIPIIVVGNKSDLSDEREVSVE---------EAQEFAKELG 135 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST--TTSEEEEEEETTTGGGGSSSCHH---------HHHHHHHHTT
T ss_pred cccccccccccccccccccccccccccccccccccc--ccccceeeeccccccccccchhh---------HHHHHHHHhC
Confidence 34557799999999974422222 234444444433 13799999999997653211211 1455666666
Q ss_pred CcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158 178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSV 207 (225)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~ 207 (225)
..|+..+ +..+.++.+++..+.+-
T Consensus 136 ~~~~e~S------a~~~~~v~~~f~~~i~~ 159 (162)
T PF00071_consen 136 VPYFEVS------AKNGENVKEIFQELIRK 159 (162)
T ss_dssp SEEEEEB------TTTTTTHHHHHHHHHHH
T ss_pred CEEEEEE------CCCCCCHHHHHHHHHHH
Confidence 5554443 33457888888777544
No 235
>PRK12739 elongation factor G; Reviewed
Probab=99.56 E-value=1e-13 Score=124.49 Aligned_cols=120 Identities=20% Similarity=0.267 Sum_probs=89.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCcccc-----c-----------cCCCCCceeEEEEEEEEeeCCceEEEEeCCCC
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFK-----S-----------KAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~-----~-----------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (225)
.....+|+++|+.++|||||+|+|+...... . .....+.|.......+.| ++..++++||||+
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~ 83 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KGHRINIIDTPGH 83 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-CCEEEEEEcCCCH
Confidence 3456899999999999999999997532110 0 012456788888888888 8899999999997
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158 80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED 152 (225)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~ 152 (225)
.++ ..+ +..+...+|++++|+|+.......+...+..+.+. ..|+++++||+|....
T Consensus 84 ~~f-------~~e----~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~-----~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 84 VDF-------TIE----VERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY-----GVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHH-------HHH----HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence 642 122 33344456999999999878877777777766553 3788999999998754
No 236
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.56 E-value=5.4e-13 Score=102.00 Aligned_cols=166 Identities=13% Similarity=0.006 Sum_probs=91.5
Q ss_pred ceeEEEEcCCCCCHHHHHH-HHhCCcccccc-CCCCCceeE---EEE-E-------EEEee-CCceEEEEeCCCCCCCCC
Q 036158 19 ERNLVLVGRTGNGKSATAN-SILGKRAFKSK-AGSSGVTKT---CEM-Q-------RTMLK-DGQVVNVIDTPGLFDSSA 84 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin-~l~~~~~~~~~-~~~~~~t~~---~~~-~-------~~~~~-~~~~~~liDtPG~~~~~~ 84 (225)
.++|+++|..|+|||||++ .+.+....... .....+|.. ... . ...+. ....+.||||+|....
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4789999999999999996 45433211000 001112221 110 0 01221 1347999999997521
Q ss_pred CcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHH---
Q 036158 85 DSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLED--- 159 (225)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~--- 159 (225)
+ ...++..+|++|+|+|.+++.+-... .++..+.... ...|+++|.||+|+..........
T Consensus 80 --------~---~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~~~~~~~~~~~~ 145 (195)
T cd01873 80 --------D---RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC---PRVPVILVGCKLDLRYADLDEVNRARR 145 (195)
T ss_pred --------h---hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhccccccchhhhccc
Confidence 1 12367799999999999855444432 2445554432 237999999999975321000000
Q ss_pred -------HhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158 160 -------YLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNS 206 (225)
Q Consensus 160 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~ 206 (225)
....-..+..+++.+..+..| + .+||+++.+++++++.+.+
T Consensus 146 ~~~~~~~~~~~V~~~e~~~~a~~~~~~~--~----E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 146 PLARPIKNADILPPETGRAVAKELGIPY--Y----ETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred ccccccccCCccCHHHHHHHHHHhCCEE--E----EcCCCCCCCHHHHHHHHHH
Confidence 000001112344555555432 2 4466777999999988865
No 237
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=7.5e-14 Score=117.27 Aligned_cols=170 Identities=21% Similarity=0.260 Sum_probs=122.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCcccccc-------------CCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCC
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSK-------------AGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLF 80 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~-------------~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~ 80 (225)
.+...+++++.+...|||||..+|+........ ....+.|...+.....+.++ ..+++|||||+.
T Consensus 57 ~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHv 136 (650)
T KOG0462|consen 57 VENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHV 136 (650)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcc
Confidence 366789999999999999999998865542211 12457788777777777332 689999999999
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHH
Q 036158 81 DSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDY 160 (225)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~ 160 (225)
|+.. ++.+.+..+ +++|+|+|+.++..+.+...+....+. ...++.|+||+|.... ..+..
T Consensus 137 DFs~-------EVsRslaac----~G~lLvVDA~qGvqAQT~anf~lAfe~-----~L~iIpVlNKIDlp~a---dpe~V 197 (650)
T KOG0462|consen 137 DFSG-------EVSRSLAAC----DGALLVVDASQGVQAQTVANFYLAFEA-----GLAIIPVLNKIDLPSA---DPERV 197 (650)
T ss_pred cccc-------eehehhhhc----CceEEEEEcCcCchHHHHHHHHHHHHc-----CCeEEEeeeccCCCCC---CHHHH
Confidence 9852 233333333 999999999877776665544333332 2678999999997665 55555
Q ss_pred hhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCC
Q 036158 161 LGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQP 215 (225)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~ 215 (225)
..+ +.+++..+...+. ..||+.+.+++++++.|.+-++......
T Consensus 198 ~~q-----~~~lF~~~~~~~i------~vSAK~G~~v~~lL~AII~rVPpP~~~~ 241 (650)
T KOG0462|consen 198 ENQ-----LFELFDIPPAEVI------YVSAKTGLNVEELLEAIIRRVPPPKGIR 241 (650)
T ss_pred HHH-----HHHHhcCCccceE------EEEeccCccHHHHHHHHHhhCCCCCCCC
Confidence 555 6777776665444 3466778999999999999998876653
No 238
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.54 E-value=1e-12 Score=96.35 Aligned_cols=122 Identities=16% Similarity=0.186 Sum_probs=91.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccc-----cCCC---CCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKS-----KAGS---SGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEF 88 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~-----~~~~---~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~ 88 (225)
....+|+|.|+.++||||++.++........ .... ..+|....+....+.++..+.|+||||+.
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~-------- 79 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQE-------- 79 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcH--------
Confidence 4568999999999999999999987664221 1112 23677778888888566899999999965
Q ss_pred HHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158 89 VSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN 153 (225)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~ 153 (225)
++.-++....+++.++|+++|...+.+....++++.+..... .|++|++||.|+....
T Consensus 80 ---RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~~a~ 137 (187)
T COG2229 80 ---RFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLFDAL 137 (187)
T ss_pred ---HHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccCCCC
Confidence 344455556678899999998876666666777777776532 7999999999987654
No 239
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.54 E-value=1.7e-13 Score=118.87 Aligned_cols=119 Identities=14% Similarity=0.209 Sum_probs=81.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccc--------------------cCCCCCceeEEEEEEEEeeCCceEEEEeC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKS--------------------KAGSSGVTKTCEMQRTMLKDGQVVNVIDT 76 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~--------------------~~~~~~~t~~~~~~~~~~~~~~~~~liDt 76 (225)
....+|+++|+.|+|||||+++|+....... .....+.|.......+.+ ++..+++|||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-~~~~inliDT 86 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-RDCLINLLDT 86 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-CCEEEEEEEC
Confidence 4568999999999999999999973221100 000123445555566777 7889999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158 77 PGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED 152 (225)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~ 152 (225)
||+.++. ..... +...+|++|+|+|+.++.......+++..... ..|+++++||+|....
T Consensus 87 PG~~df~-------~~~~~----~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~-----~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 87 PGHEDFS-------EDTYR----TLTAVDSALMVIDAAKGVEPQTRKLMEVCRLR-----DTPIFTFINKLDRDGR 146 (526)
T ss_pred CCchhhH-------HHHHH----HHHHCCEEEEEEecCCCCCHHHHHHHHHHHhc-----CCCEEEEEECCccccc
Confidence 9987652 11222 23467999999999877766666666554432 3799999999997654
No 240
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.52 E-value=3e-13 Score=117.37 Aligned_cols=119 Identities=15% Similarity=0.199 Sum_probs=81.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccc--c------------------CCCCCceeEEEEEEEEeeCCceEEEEeC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKS--K------------------AGSSGVTKTCEMQRTMLKDGQVVNVIDT 76 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~--~------------------~~~~~~t~~~~~~~~~~~~~~~~~liDt 76 (225)
....+|+++|+.|+|||||+++|+....... + ....+.|.......+.+ ++..+++|||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~-~~~~inliDT 87 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY-RDCLVNLLDT 87 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-CCeEEEEEEC
Confidence 4568999999999999999999863221110 0 00124455555666777 7889999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158 77 PGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED 152 (225)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~ 152 (225)
||+.++. .... .+...+|++|+|+|+...+......+++.+.. ...|+++++||+|....
T Consensus 88 PG~~df~-------~~~~----~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-----~~~PiivviNKiD~~~~ 147 (527)
T TIGR00503 88 PGHEDFS-------EDTY----RTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL-----RDTPIFTFMNKLDRDIR 147 (527)
T ss_pred CChhhHH-------HHHH----HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh-----cCCCEEEEEECccccCC
Confidence 9986442 1122 23346799999999986666666666654443 13799999999997543
No 241
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=2e-12 Score=94.80 Aligned_cols=162 Identities=16% Similarity=0.089 Sum_probs=99.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
...+++.++|.+|+|||.|+..++.....+......+.........+.- ...++.+|||.|.. .++..
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~-k~IKlqiwDtaGqe-----------~frsv 71 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDG-KQIKLQIWDTAGQE-----------SFRSV 71 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcC-ceEEEEEEecCCcH-----------HHHHH
Confidence 3458899999999999999999997764322221122222222222222 33489999999954 45666
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
..+++..+.++|||.|++.+-+-. ...+|+.+++... ...-++++.||+|+....+-+-++ -+...++
T Consensus 72 ~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~--~NmvImLiGNKsDL~~rR~Vs~EE---------GeaFA~e 140 (216)
T KOG0098|consen 72 TRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSN--ENMVIMLIGNKSDLEARREVSKEE---------GEAFARE 140 (216)
T ss_pred HHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcC--CCcEEEEEcchhhhhccccccHHH---------HHHHHHH
Confidence 678899999999999998443322 2344555555422 235678889999976554111111 1223333
Q ss_pred cCCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158 176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV 207 (225)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~ 207 (225)
.+. .|. .+|++++.++++.+.-+...
T Consensus 141 hgL---ifm---ETSakt~~~VEEaF~nta~~ 166 (216)
T KOG0098|consen 141 HGL---IFM---ETSAKTAENVEEAFINTAKE 166 (216)
T ss_pred cCc---eee---hhhhhhhhhHHHHHHHHHHH
Confidence 232 222 56778889999988766543
No 242
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.51 E-value=2.2e-13 Score=116.00 Aligned_cols=171 Identities=12% Similarity=0.151 Sum_probs=104.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCcccc-ccCCCCCceeEEEEEEE---------------Eee-------------
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFK-SKAGSSGVTKTCEMQRT---------------MLK------------- 66 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~-~~~~~~~~t~~~~~~~~---------------~~~------------- 66 (225)
.-+.++|+++|+..+|||||+.+|++..... ......+.|....+... .++
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 3567999999999999999999999865321 11122233322221111 010
Q ss_pred ----CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-CCHHHHHHHHHHHHHhcccccccEE
Q 036158 67 ----DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNR-FSEEEGAAIHILESLFGKKISDYMI 141 (225)
Q Consensus 67 ----~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~ 141 (225)
....+.|+||||+.+ +.+.+......+|++++|+++.+. .....++.+..+. .++- ++++
T Consensus 111 ~~~~~~~~i~~IDtPGH~~-----------fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~-~lgi---~~iI 175 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDI-----------LMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVE-IMKL---KHII 175 (460)
T ss_pred ccccccceEeeeeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHH-HcCC---CcEE
Confidence 124789999999642 222222233477999999999854 3444555554433 3332 6789
Q ss_pred EEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 142 VVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 142 vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
+|+||+|..... ..++..++ +++++..+... .....+.|+.++.++++|++.|.+.++..
T Consensus 176 VvlNKiDlv~~~--~~~~~~~e-----i~~~l~~~~~~---~~~iipVSA~~G~nI~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 176 ILQNKIDLVKEA--QAQDQYEE-----IRNFVKGTIAD---NAPIIPISAQLKYNIDVVLEYICTQIPIP 235 (460)
T ss_pred EEEecccccCHH--HHHHHHHH-----HHHHHHhhccC---CCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence 999999986432 34444444 45555432211 11234567777899999999998766544
No 243
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=1e-12 Score=98.21 Aligned_cols=119 Identities=18% Similarity=0.178 Sum_probs=84.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
...++|+++|.+|+|||-|+.+++............+..... ..+.+ ++. +..||||.|.. +++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t--~t~~v-d~k~vkaqIWDTAGQE-----------Ryr 77 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFAT--RTVNV-DGKTVKAQIWDTAGQE-----------RYR 77 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEe--eceee-cCcEEEEeeecccchh-----------hhc
Confidence 556889999999999999999999877644443333333333 23333 333 78999999953 455
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc-cccccEEEEEecCCCCC
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK-KISDYMIVVFTGGDELE 151 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~vv~~k~D~~~ 151 (225)
.....+++++.+.++|.|++.+.+-+ .+.+||.++... +...++++|.||+|+..
T Consensus 78 AitSaYYrgAvGAllVYDITr~~Tfe--nv~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 78 AITSAYYRGAVGALLVYDITRRQTFE--NVERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred cccchhhcccceeEEEEechhHHHHH--HHHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 66678899999999999998554433 344555554433 35678999999999875
No 244
>PRK13351 elongation factor G; Reviewed
Probab=99.51 E-value=2.5e-13 Score=122.10 Aligned_cols=127 Identities=17% Similarity=0.186 Sum_probs=88.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccc--c--------------CCCCCceeEEEEEEEEeeCCceEEEEeCCCCC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKS--K--------------AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~--~--------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~ 80 (225)
....+|+++|+.|+|||||+++|+....... . ....+.|.......+.| .+..+++|||||+.
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~ 84 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW-DNHRINLIDTPGHI 84 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-CCEEEEEEECCCcH
Confidence 4568999999999999999999985321100 0 00234566666677788 78899999999986
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHH
Q 036158 81 DSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDY 160 (225)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~ 160 (225)
++. ..+..+...+|++++|+|+.++........++.+... ..|+++++||+|.... .+.+.
T Consensus 85 df~-----------~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~-----~~p~iiviNK~D~~~~---~~~~~ 145 (687)
T PRK13351 85 DFT-----------GEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY-----GIPRLIFINKMDRVGA---DLFKV 145 (687)
T ss_pred HHH-----------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEECCCCCCC---CHHHH
Confidence 531 2222344566999999999867766666666655442 3789999999997754 44444
Q ss_pred hhh
Q 036158 161 LGR 163 (225)
Q Consensus 161 ~~~ 163 (225)
+.+
T Consensus 146 ~~~ 148 (687)
T PRK13351 146 LED 148 (687)
T ss_pred HHH
Confidence 333
No 245
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.50 E-value=8.9e-13 Score=108.66 Aligned_cols=126 Identities=17% Similarity=0.216 Sum_probs=86.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcccccc--------------CCCCC---ceeEEEE---EEEEeeCC----ceEE
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSK--------------AGSSG---VTKTCEM---QRTMLKDG----QVVN 72 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~--------------~~~~~---~t~~~~~---~~~~~~~~----~~~~ 72 (225)
...+.|+|+|+.++|||||||++.+.-+.+.. .+..+ +|+++.+ ..+++... .+++
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 45689999999999999999999998322111 12344 6777777 55555455 6999
Q ss_pred EEeCCCCCCCCCCcHHHHHH----------------------HHHHHhhcCCCccEEEEEE-eCC------CCCCHHHHH
Q 036158 73 VIDTPGLFDSSADSEFVSKE----------------------IVKCIGMTKDGIHAVLVVF-SVR------NRFSEEEGA 123 (225)
Q Consensus 73 liDtPG~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~ii~v~-~~~------~~~~~~~~~ 123 (225)
++||+|+.+..+....-... .++.+ ...+++.|+|. |+. ..+...+.+
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI---~dhstIgivVtTDgsi~dI~Re~y~~aEe~ 171 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVI---QEHSTIGVVVTTDGTITDIPREDYVEAEER 171 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHH---HhcCcEEEEEEcCCCccccccccchHHHHH
Confidence 99999998755322111111 11111 12568888887 763 356677788
Q ss_pred HHHHHHHHhcccccccEEEEEecCCCC
Q 036158 124 AIHILESLFGKKISDYMIVVFTGGDEL 150 (225)
Q Consensus 124 ~~~~l~~~~~~~~~~~~~vv~~k~D~~ 150 (225)
.++.|++. .+|+++|+|+.|..
T Consensus 172 ~i~eLk~~-----~kPfiivlN~~dp~ 193 (492)
T TIGR02836 172 VIEELKEL-----NKPFIILLNSTHPY 193 (492)
T ss_pred HHHHHHhc-----CCCEEEEEECcCCC
Confidence 88888875 48999999999954
No 246
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.50 E-value=5e-13 Score=114.04 Aligned_cols=142 Identities=16% Similarity=0.209 Sum_probs=93.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccc-----------------------------cccCCCCCceeEEEEEEEEee
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAF-----------------------------KSKAGSSGVTKTCEMQRTMLK 66 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~~~~ 66 (225)
.+++++|+++|+.++|||||+.+|+..... .......+.|.......+++
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~- 82 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET- 82 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC-
Confidence 467899999999999999999888632110 01112356788887788887
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-CC------HHHHHHHHHHHHHhccccccc
Q 036158 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNR-FS------EEEGAAIHILESLFGKKISDY 139 (225)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~-~~------~~~~~~~~~l~~~~~~~~~~~ 139 (225)
.+..++++||||+.++ ...+......+|++|+|+|+.+. +. ...++.+..+.. .+ .++
T Consensus 83 ~~~~i~liDtPGh~df-----------~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~-~g---i~~ 147 (447)
T PLN00043 83 TKYYCTVIDAPGHRDF-----------IKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT-LG---VKQ 147 (447)
T ss_pred CCEEEEEEECCCHHHH-----------HHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH-cC---CCc
Confidence 7889999999997543 23333445678999999999753 21 233444443333 22 146
Q ss_pred EEEEEecCCCCCCC--cccHHHHhhhcCCchHHHHHHHcCC
Q 036158 140 MIVVFTGGDELEDN--DETLEDYLGRECPKPLKEILQLCDN 178 (225)
Q Consensus 140 ~~vv~~k~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (225)
+++++||+|..... ...+++..++ ++.+++..+.
T Consensus 148 iIV~vNKmD~~~~~~~~~~~~~i~~e-----i~~~l~~~g~ 183 (447)
T PLN00043 148 MICCCNKMDATTPKYSKARYDEIVKE-----VSSYLKKVGY 183 (447)
T ss_pred EEEEEEcccCCchhhhHHHHHHHHHH-----HHHHHHHcCC
Confidence 78899999965211 2245555555 7777776663
No 247
>PLN00023 GTP-binding protein; Provisional
Probab=99.50 E-value=8e-13 Score=106.83 Aligned_cols=124 Identities=18% Similarity=0.210 Sum_probs=78.4
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEE--EEEEEEee--------------CCceEEEEeC
Q 036158 13 TSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTC--EMQRTMLK--------------DGQVVNVIDT 76 (225)
Q Consensus 13 ~~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~~--------------~~~~~~liDt 76 (225)
..+....++|+|+|..|+|||||++.+.+...... ...|..+ ....+.+. ....+.||||
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~----~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDT 90 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIAR----PPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDV 90 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccc----cCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEEC
Confidence 34456679999999999999999999997664221 1222222 22233331 1235899999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc----------cccccEEEEEe
Q 036158 77 PGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGK----------KISDYMIVVFT 145 (225)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~----------~~~~~~~vv~~ 145 (225)
+|... +..+...++.+++++|+|+|++++-+... ..+++.+...... ....|+++|.|
T Consensus 91 AGqEr-----------frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGN 159 (334)
T PLN00023 91 SGHER-----------YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGN 159 (334)
T ss_pred CCChh-----------hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEE
Confidence 99653 33444456788999999999975433222 2234444433210 01368999999
Q ss_pred cCCCCC
Q 036158 146 GGDELE 151 (225)
Q Consensus 146 k~D~~~ 151 (225)
|+|+..
T Consensus 160 K~DL~~ 165 (334)
T PLN00023 160 KADIAP 165 (334)
T ss_pred Cccccc
Confidence 999754
No 248
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=5.4e-13 Score=109.16 Aligned_cols=144 Identities=19% Similarity=0.278 Sum_probs=103.4
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhCCcccc-----------------------------ccCCCCCceeEEEEEEEEe
Q 036158 15 PSNGERNLVLVGRTGNGKSATANSILGKRAFK-----------------------------SKAGSSGVTKTCEMQRTML 65 (225)
Q Consensus 15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~ 65 (225)
..+++++++++|+..+|||||+-.|+-..... ......+.|.+.....++.
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 35788999999999999999998877432110 0112357888888888888
Q ss_pred eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccc
Q 036158 66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNR-------FSEEEGAAIHILESLFGKKISD 138 (225)
Q Consensus 66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~ 138 (225)
+...++|+|+||+-|+ +.+++ .-...+|+.|||+++... ....+++.+ .|...+|- .
T Consensus 83 -~k~~~tIiDaPGHrdF----------vknmI-tGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~-~La~tlGi---~ 146 (428)
T COG5256 83 -DKYNFTIIDAPGHRDF----------VKNMI-TGASQADVAVLVVDARDGEFEAGFGVGGQTREHA-FLARTLGI---K 146 (428)
T ss_pred -CCceEEEeeCCchHHH----------HHHhh-cchhhccEEEEEEECCCCccccccccCCchhHHH-HHHHhcCC---c
Confidence 7788999999997654 22222 334577999999999755 344444443 33444553 7
Q ss_pred cEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158 139 YMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 179 (225)
Q Consensus 139 ~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (225)
.++|++||+|...-++..+++...+ +..+++.+|..
T Consensus 147 ~lIVavNKMD~v~wde~rf~ei~~~-----v~~l~k~~G~~ 182 (428)
T COG5256 147 QLIVAVNKMDLVSWDEERFEEIVSE-----VSKLLKMVGYN 182 (428)
T ss_pred eEEEEEEcccccccCHHHHHHHHHH-----HHHHHHHcCCC
Confidence 8999999999998766677777777 77788888864
No 249
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.49 E-value=2.9e-12 Score=99.62 Aligned_cols=121 Identities=17% Similarity=0.124 Sum_probs=77.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
..+|+++|..|+|||||++++.+........ ....................+.+|||+|.. .+...+.
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~-----------~~~~~~~ 72 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYP-PTIGNLDPAKTIEPYRRNIKLQLWDTAGQE-----------EYRSLRP 72 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCC-CceeeeeEEEEEEeCCCEEEEEeecCCCHH-----------HHHHHHH
Confidence 3899999999999999999999877532211 111111111111111013468999999954 4455666
Q ss_pred hcCCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158 99 MTKDGIHAVLVVFSVRN--RFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN 153 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~ 153 (225)
.++.+++++++|++... +.......+...+....+ ...|++++.||+|+....
T Consensus 73 ~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~~ 127 (219)
T COG1100 73 EYYRGANGILIVYDSTLRESSDELTEEWLEELRELAP--DDVPILLVGNKIDLFDEQ 127 (219)
T ss_pred HHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC--CCceEEEEecccccccch
Confidence 77889999999999863 122222334444444332 237999999999987654
No 250
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.47 E-value=1.5e-12 Score=95.13 Aligned_cols=171 Identities=15% Similarity=0.148 Sum_probs=104.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
...++|.++|.+|+|||||.|.+...+.........+......-..+. ..-.-+.+|||.|...+ .+.
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd-~~~vtlQiWDTAGQERF-----------qsL 74 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVD-DRSVTLQIWDTAGQERF-----------QSL 74 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEc-CeEEEEEEEecccHHHh-----------hhc
Confidence 345899999999999999999999877544332233322222222221 12236899999996533 222
Q ss_pred HhhcCCCccEEEEEEeCCCC--CCHHHHHHHHHHHHHhccc-ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNR--FSEEEGAAIHILESLFGKK-ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~--~~~~~~~~~~~l~~~~~~~-~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
-...++++|..++|.|.+.. +...+.+.-+.+...-..+ ...|.+|+.||+|........ ....+..
T Consensus 75 g~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~----------VS~~~Aq 144 (210)
T KOG0394|consen 75 GVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQ----------VSEKKAQ 144 (210)
T ss_pred ccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccce----------eeHHHHH
Confidence 23467899999999988743 2222333333344332233 457999999999976532111 1123444
Q ss_pred HHcC--CcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158 174 QLCD--NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG 213 (225)
Q Consensus 174 ~~~~--~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~ 213 (225)
.+|+ ..++.|.. ||+...+|++.++-+.+..-++..
T Consensus 145 ~WC~s~gnipyfEt----SAK~~~NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 145 TWCKSKGNIPYFET----SAKEATNVDEAFEEIARRALANED 182 (210)
T ss_pred HHHHhcCCceeEEe----cccccccHHHHHHHHHHHHHhccc
Confidence 5554 34555544 455668999999888877776654
No 251
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.5e-12 Score=95.57 Aligned_cols=165 Identities=12% Similarity=0.071 Sum_probs=112.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
..+..+|+++|--|+||||+++.|.-.+...+ .+|.......+++ .+..+.+||.-|.. .++.
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-----vPTiGfnVE~v~y-kn~~f~vWDvGGq~-----------k~R~ 76 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----VPTIGFNVETVEY-KNISFTVWDVGGQE-----------KLRP 76 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-----CCccccceeEEEE-cceEEEEEecCCCc-----------cccc
Confidence 56779999999999999999999886665433 4577777777888 78899999999964 3455
Q ss_pred HHhhcCCCccEEEEEEeCCCC--CCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNR--FSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
.+..+++..+++|||+|..++ +.....++.+.+.+-- -...|+++..||.|..... +..+..+. ..+-
T Consensus 77 lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~--l~~~~llv~aNKqD~~~al--s~~ei~~~------L~l~ 146 (181)
T KOG0070|consen 77 LWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPE--LRNAPLLVFANKQDLPGAL--SAAEITNK------LGLH 146 (181)
T ss_pred chhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcc--cCCceEEEEechhhccccC--CHHHHHhH------hhhh
Confidence 566788899999999998743 2222222333332211 1247999999999977654 44443322 2222
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
+-++..++.-.. .|.++.++.+-++++.+.+...
T Consensus 147 ~l~~~~w~iq~~----~a~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 147 SLRSRNWHIQST----CAISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred ccCCCCcEEeec----cccccccHHHHHHHHHHHHhcc
Confidence 333344443333 3456799999999998877653
No 252
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=3.4e-12 Score=90.18 Aligned_cols=154 Identities=19% Similarity=0.238 Sum_probs=98.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCce--eEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVT--KTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
-++|+++|..|+|||-|++.++..- ++. ..+.| .+.....+++ ++. ++.+|||.|. +.++
T Consensus 7 lfkivlvgnagvgktclvrrftqgl-fpp---gqgatigvdfmiktvev-~gekiklqiwdtagq-----------erfr 70 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGL-FPP---GQGATIGVDFMIKTVEV-NGEKIKLQIWDTAGQ-----------ERFR 70 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccC-CCC---CCCceeeeeEEEEEEEE-CCeEEEEEEeeccch-----------HHHH
Confidence 4789999999999999999988544 333 22333 3444556666 443 7999999994 4566
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCH-HHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSE-EEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
....++++.+|++|+|.|+....+- -..+++..+.++.... .--++|.||.|+.... .+.+...+ -+
T Consensus 71 sitqsyyrsahalilvydiscqpsfdclpewlreie~yan~k--vlkilvgnk~d~~drr--evp~qige--------ef 138 (213)
T KOG0095|consen 71 SITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNK--VLKILVGNKIDLADRR--EVPQQIGE--------EF 138 (213)
T ss_pred HHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcc--eEEEeeccccchhhhh--hhhHHHHH--------HH
Confidence 7777888899999999999733222 2345667777765443 4458899999975443 22222222 11
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHH
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVN 205 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~ 205 (225)
... +.+.| ..+||+...+++.|+.-+.
T Consensus 139 s~~--qdmyf---letsakea~nve~lf~~~a 165 (213)
T KOG0095|consen 139 SEA--QDMYF---LETSAKEADNVEKLFLDLA 165 (213)
T ss_pred HHh--hhhhh---hhhcccchhhHHHHHHHHH
Confidence 111 11122 2345556688888876554
No 253
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.46 E-value=3.3e-12 Score=90.10 Aligned_cols=160 Identities=16% Similarity=0.197 Sum_probs=101.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc-eEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ-VVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
++.+++|.+|+|||||+-.+..... .. +....+..+.....+.+++.+ .+.||||+|. +.++.+.+
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtF-s~-sYitTiGvDfkirTv~i~G~~VkLqIwDtAGq-----------ErFrtits 75 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTF-SG-SYITTIGVDFKIRTVDINGDRVKLQIWDTAGQ-----------ERFRTITS 75 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhccc-cc-ceEEEeeeeEEEEEeecCCcEEEEEEeecccH-----------HHHHHHHH
Confidence 5678999999999999977765542 22 222223344455566663333 7999999993 56777778
Q ss_pred hcCCCccEEEEEEeCCCCCCH-HHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158 99 MTKDGIHAVLVVFSVRNRFSE-EEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
.++.++|++++|.|.+..-+- .-.++++.++..+.+ .|-++|.||.|..+.. .+.. +..+......+
T Consensus 76 tyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncds---v~~vLVGNK~d~~~Rr--vV~t-------~dAr~~A~~mg 143 (198)
T KOG0079|consen 76 TYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDS---VPKVLVGNKNDDPERR--VVDT-------EDARAFALQMG 143 (198)
T ss_pred HHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCcc---ccceecccCCCCccce--eeeh-------HHHHHHHHhcC
Confidence 889999999999999743221 124566666665543 7889999999976543 1111 11233333333
Q ss_pred CcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
.. ...+|++...++++.+.-|.+.+..
T Consensus 144 ie------~FETSaKe~~NvE~mF~cit~qvl~ 170 (198)
T KOG0079|consen 144 IE------LFETSAKENENVEAMFHCITKQVLQ 170 (198)
T ss_pred ch------heehhhhhcccchHHHHHHHHHHHH
Confidence 32 2344556667888887777655544
No 254
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.45 E-value=2.6e-12 Score=107.78 Aligned_cols=89 Identities=19% Similarity=0.168 Sum_probs=62.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee--------------------C---CceEEEEeC
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK--------------------D---GQVVNVIDT 76 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--------------------~---~~~~~liDt 76 (225)
++|+++|.+|+|||||+|+|++.... ....+.+|..+.......+ + ...+.++||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~--~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVE--IANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccc--ccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 58999999999999999999988752 2345666666655443210 1 136889999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 036158 77 PGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVR 114 (225)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~ 114 (225)
||+.........+...+.+.+. .+|++++|+|..
T Consensus 80 aGl~~ga~~g~glg~~fL~~ir----~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGAHEGRGLGNQFLDDLR----QADALIHVVDAS 113 (396)
T ss_pred CCcCCCccchhhHHHHHHHHHH----HCCEEEEEEeCC
Confidence 9998654444445555554443 559999999984
No 255
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.45 E-value=1.7e-11 Score=95.74 Aligned_cols=160 Identities=16% Similarity=0.195 Sum_probs=93.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
..+...|+++|.+|+|||||+|+|++...........+ + . .+..+.+..++++||||.. ..+..
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~--i---~i~~~~~~~i~~vDtPg~~----------~~~l~ 99 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-P--I---TVVTGKKRRLTFIECPNDI----------NAMID 99 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-c--E---EEEecCCceEEEEeCCchH----------HHHHH
Confidence 35567899999999999999999987632111111111 1 1 1111267789999999842 12222
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc-EEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
. ...+|++++|+|+.......+..++..+... ..| +++|+||+|..... ...++...+ +++.+.
T Consensus 100 ~----ak~aDvVllviDa~~~~~~~~~~i~~~l~~~-----g~p~vi~VvnK~D~~~~~-~~~~~~~~~-----l~~~~~ 164 (225)
T cd01882 100 I----AKVADLVLLLIDASFGFEMETFEFLNILQVH-----GFPRVMGVLTHLDLFKKN-KTLRKTKKR-----LKHRFW 164 (225)
T ss_pred H----HHhcCEEEEEEecCcCCCHHHHHHHHHHHHc-----CCCeEEEEEeccccCCcH-HHHHHHHHH-----HHHHHH
Confidence 2 2456999999999867777777777776652 245 45599999987542 234444333 443221
Q ss_pred --Hc-CCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158 175 --LC-DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV 207 (225)
Q Consensus 175 --~~-~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~ 207 (225)
.. +.+++.++...+.. -...+...++..|..+
T Consensus 165 ~~~~~~~ki~~iSa~~~~~-~~~~e~~~~~r~i~~~ 199 (225)
T cd01882 165 TEVYQGAKLFYLSGIVHGR-YPKTEIHNLARFISVM 199 (225)
T ss_pred HhhCCCCcEEEEeeccCCC-CCHHHHHHHHHHHHhC
Confidence 11 24566665433311 1124445555555433
No 256
>PTZ00416 elongation factor 2; Provisional
Probab=99.45 E-value=8.8e-13 Score=120.35 Aligned_cols=119 Identities=17% Similarity=0.196 Sum_probs=82.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCcccccc--------------CCCCCceeEEEEEEEEee---------CCceEE
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSK--------------AGSSGVTKTCEMQRTMLK---------DGQVVN 72 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~---------~~~~~~ 72 (225)
.....+|+++|+.++|||||+++|+........ ....+.|.......+.|. .+..++
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 455679999999999999999999864422110 011233433333344442 145799
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 036158 73 VIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDEL 150 (225)
Q Consensus 73 liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~ 150 (225)
|+||||+.++ ...+..+...+|++|+|+|+..++...+...++.+.+. ..|+++++||+|..
T Consensus 96 liDtPG~~~f-----------~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~-----~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDF-----------SSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQE-----RIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhH-----------HHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHc-----CCCEEEEEEChhhh
Confidence 9999998753 22233445677999999999878888887777766653 26999999999986
No 257
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.42 E-value=3.4e-12 Score=104.12 Aligned_cols=87 Identities=18% Similarity=0.195 Sum_probs=58.6
Q ss_pred EEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-----------------------CCceEEEEeCCC
Q 036158 22 LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-----------------------DGQVVNVIDTPG 78 (225)
Q Consensus 22 i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------------~~~~~~liDtPG 78 (225)
|+++|.+|+|||||+|+|++... .. ...+.+|..+......++ ...++.+|||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~-~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EI-ANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cc-cCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence 58999999999999999998774 22 334556655554333220 124799999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 036158 79 LFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVR 114 (225)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~ 114 (225)
+.........+...+...+ ..+|++++|+|..
T Consensus 79 lv~ga~~~~glg~~fL~~i----r~aD~ii~Vvd~~ 110 (318)
T cd01899 79 LVPGAHEGKGLGNKFLDDL----RDADALIHVVDAS 110 (318)
T ss_pred CCCCccchhhHHHHHHHHH----HHCCEEEEEEeCC
Confidence 9755433333444444443 4559999999985
No 258
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.41 E-value=7.1e-12 Score=103.82 Aligned_cols=174 Identities=16% Similarity=0.262 Sum_probs=117.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccc--------------cCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKS--------------KAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDS 82 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~ 82 (225)
.+..+|+++.+...|||||+..|+.++..-. .....+.|.-..-..+.| ++..|+++||||+-|+
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~-~~~~INIvDTPGHADF 81 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNY-NGTRINIVDTPGHADF 81 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeec-CCeEEEEecCCCcCCc
Confidence 3457899999999999999999997664211 111356787777778888 8999999999999998
Q ss_pred CCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhh
Q 036158 83 SADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLG 162 (225)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~ 162 (225)
...-+ +.+++ +|.+++++|+.+..-+.++-.++...+. ..+.+||+||+|.... ..++.+.
T Consensus 82 GGEVE-------Rvl~M----VDgvlLlVDA~EGpMPQTrFVlkKAl~~-----gL~PIVVvNKiDrp~A---rp~~Vvd 142 (603)
T COG1217 82 GGEVE-------RVLSM----VDGVLLLVDASEGPMPQTRFVLKKALAL-----GLKPIVVINKIDRPDA---RPDEVVD 142 (603)
T ss_pred cchhh-------hhhhh----cceEEEEEEcccCCCCchhhhHHHHHHc-----CCCcEEEEeCCCCCCC---CHHHHHH
Confidence 64333 22222 3999999999877666676666544432 2566889999997765 4444444
Q ss_pred hcCCchHHHHH-------HHcCCcEEEeeCCC----ccccccHHHHHHHHHHHHHHHHHcCCCC
Q 036158 163 RECPKPLKEIL-------QLCDNRCVLFDNKT----KDTAKRTEQVGKLLSLVNSVIVQNGGQP 215 (225)
Q Consensus 163 ~~~~~~~~~~~-------~~~~~~~~~~~~~~----~~~~~~~~~v~~l~~~i~~~~~~~~~~~ 215 (225)
+ ...++ +++..++.+-+... .+......++..|++.|.++++...+..
T Consensus 143 ~-----vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~ 201 (603)
T COG1217 143 E-----VFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDL 201 (603)
T ss_pred H-----HHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCC
Confidence 4 33333 33444544433211 1122334678999999999998877643
No 259
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.40 E-value=8.8e-12 Score=104.06 Aligned_cols=134 Identities=19% Similarity=0.211 Sum_probs=96.0
Q ss_pred CCCCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHH
Q 036158 12 PTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSK 91 (225)
Q Consensus 12 ~~~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~ 91 (225)
+++...+..+++|+|-+|+|||||+|.++...+ ....+..+|.......+.+ ....+.++||||+.|....+.-+.+
T Consensus 161 lPsIDp~trTlllcG~PNVGKSSf~~~vtradv--evqpYaFTTksL~vGH~dy-kYlrwQViDTPGILD~plEdrN~IE 237 (620)
T KOG1490|consen 161 LPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD--EVQPYAFTTKLLLVGHLDY-KYLRWQVIDTPGILDRPEEDRNIIE 237 (620)
T ss_pred CCCCCCCcCeEEEecCCCCCcHhhccccccccc--ccCCcccccchhhhhhhhh-heeeeeecCCccccCcchhhhhHHH
Confidence 345567789999999999999999999998775 3334566676666666666 6678999999999976543332222
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCC--CCCHH-HHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158 92 EIVKCIGMTKDGIHAVLVVFSVRN--RFSEE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDN 153 (225)
Q Consensus 92 ~~~~~~~~~~~~~~~ii~v~~~~~--~~~~~-~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~ 153 (225)
.. .....+ +---+|+|++|.+. +.+.+ +..++..++.+|.. +|+++|+||+|.+.++
T Consensus 238 mq-sITALA-HLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaN---K~~IlvlNK~D~m~~e 297 (620)
T KOG1490|consen 238 MQ-IITALA-HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFAN---KVTILVLNKIDAMRPE 297 (620)
T ss_pred HH-HHHHHH-HhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcC---CceEEEeecccccCcc
Confidence 11 111111 11257889988863 34444 46788999999977 8999999999999876
No 260
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.40 E-value=2.8e-12 Score=95.78 Aligned_cols=120 Identities=16% Similarity=0.219 Sum_probs=66.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEE--eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTM--LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
...|+++|++|+|||+|+..|.......+ .|......... ...+..+.|+|+||+...+ .+..+.+.
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T------~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr---~~~~~~~~-- 71 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPT------VTSMENNIAYNVNNSKGKKLRLVDIPGHPRLR---SKLLDELK-- 71 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---------SSEEEECCGSSTCGTCECEEEETT-HCCC---HHHHHHHH--
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCe------eccccCCceEEeecCCCCEEEEEECCCcHHHH---HHHHHhhh--
Confidence 46899999999999999999987643221 22211111111 1245689999999987442 22222221
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc----cccccEEEEEecCCCCCCC
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK----KISDYMIVVFTGGDELEDN 153 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~vv~~k~D~~~~~ 153 (225)
+...+-+||||+|+. .....-.+..+.|..++.. ....|++|+.||.|.....
T Consensus 72 ---~~~~~k~IIfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 72 ---YLSNAKGIIFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp ---HHGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred ---chhhCCEEEEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 234579999999986 2222223333333333322 2357999999999987654
No 261
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.39 E-value=1.8e-12 Score=88.96 Aligned_cols=142 Identities=20% Similarity=0.243 Sum_probs=90.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (225)
.+|+++|..|+|||||.++|.|...... .| ..+++ ++. -.|||||.+-. .+.+..++.-
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lyk------KT-----QAve~-~d~--~~IDTPGEy~~-------~~~~Y~aL~t 60 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYK------KT-----QAVEF-NDK--GDIDTPGEYFE-------HPRWYHALIT 60 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhc------cc-----ceeec-cCc--cccCCchhhhh-------hhHHHHHHHH
Confidence 4799999999999999999999875322 12 23344 222 15999996521 2344455555
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158 100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 179 (225)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (225)
....+|++++|..++++-+.--..++ .-..++++-|+||+|+.++. .++. .++.+...|..
T Consensus 61 t~~dadvi~~v~~and~~s~f~p~f~--------~~~~k~vIgvVTK~DLaed~--dI~~---------~~~~L~eaGa~ 121 (148)
T COG4917 61 TLQDADVIIYVHAANDPESRFPPGFL--------DIGVKKVIGVVTKADLAEDA--DISL---------VKRWLREAGAE 121 (148)
T ss_pred HhhccceeeeeecccCccccCCcccc--------cccccceEEEEecccccchH--hHHH---------HHHHHHHcCCc
Confidence 66788999999988754222111111 11235799999999988653 4333 35556666654
Q ss_pred EEEeeCCCccccccHHHHHHHHHHHHH
Q 036158 180 CVLFDNKTKDTAKRTEQVGKLLSLVNS 206 (225)
Q Consensus 180 ~~~~~~~~~~~~~~~~~v~~l~~~i~~ 206 (225)
..+..+ +....++++|++++..
T Consensus 122 ~IF~~s-----~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 122 PIFETS-----AVDNQGVEELVDYLAS 143 (148)
T ss_pred ceEEEe-----ccCcccHHHHHHHHHh
Confidence 443332 2344899999998854
No 262
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.39 E-value=2.5e-12 Score=117.61 Aligned_cols=119 Identities=17% Similarity=0.226 Sum_probs=82.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCcccccc--------------CCCCCceeEEEEEEEEee---------------
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSK--------------AGSSGVTKTCEMQRTMLK--------------- 66 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~--------------- 66 (225)
.....+|+|+|+.++|||||+++|+........ ....+.|.......+.|.
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 456789999999999999999999855432111 011234444444444442
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 036158 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTG 146 (225)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k 146 (225)
.+..++|+||||+.++. .++ ......+|++|+|+|+..+....+...++.+... ..|+++++||
T Consensus 96 ~~~~inliDtPGh~dF~-------~e~----~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~-----~~p~i~~iNK 159 (843)
T PLN00116 96 NEYLINLIDSPGHVDFS-------SEV----TAALRITDGALVVVDCIEGVCVQTETVLRQALGE-----RIRPVLTVNK 159 (843)
T ss_pred CceEEEEECCCCHHHHH-------HHH----HHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHC-----CCCEEEEEEC
Confidence 25578999999987551 222 2334566999999999878887777777766553 3789999999
Q ss_pred CCCC
Q 036158 147 GDEL 150 (225)
Q Consensus 147 ~D~~ 150 (225)
+|..
T Consensus 160 ~D~~ 163 (843)
T PLN00116 160 MDRC 163 (843)
T ss_pred Cccc
Confidence 9987
No 263
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3.3e-12 Score=110.00 Aligned_cols=131 Identities=24% Similarity=0.327 Sum_probs=92.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEE------------------------------------
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEM------------------------------------ 60 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~------------------------------------ 60 (225)
....+|+++|.+++||||++|+++..++.+... ++|+.|..
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~---gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~ 183 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGI---GHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPD 183 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccc---cccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcc
Confidence 446889999999999999999999888655422 22222211
Q ss_pred --------EEEEeeCCc------eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHH
Q 036158 61 --------QRTMLKDGQ------VVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIH 126 (225)
Q Consensus 61 --------~~~~~~~~~------~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~ 126 (225)
..+.||.+. .+.++|.||++-.. +...++......+|++|||+.+...++..+++++.
T Consensus 184 ~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~s--------e~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~ 255 (749)
T KOG0448|consen 184 KDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDS--------ELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFH 255 (749)
T ss_pred cccCcceEEEEEecCccchhhhccceeccCCCCCCch--------hhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHH
Confidence 224444441 58999999997432 23334445666889999999998788888888887
Q ss_pred HHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh
Q 036158 127 ILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR 163 (225)
Q Consensus 127 ~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~ 163 (225)
...+. ++++.|+.||||...+.++-.++...+
T Consensus 256 ~vs~~-----KpniFIlnnkwDasase~ec~e~V~~Q 287 (749)
T KOG0448|consen 256 KVSEE-----KPNIFILNNKWDASASEPECKEDVLKQ 287 (749)
T ss_pred Hhhcc-----CCcEEEEechhhhhcccHHHHHHHHHH
Confidence 66653 478999999999887654455555444
No 264
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.38 E-value=2.1e-12 Score=116.40 Aligned_cols=119 Identities=16% Similarity=0.224 Sum_probs=78.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccc--------------cccCCCCCceeEEEEE----EEEeeCCceEEEEeCC
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAF--------------KSKAGSSGVTKTCEMQ----RTMLKDGQVVNVIDTP 77 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~--------------~~~~~~~~~t~~~~~~----~~~~~~~~~~~liDtP 77 (225)
.....+|+++|+.++|||||+++|+..... .......+.|...... .+.+ .+..++|||||
T Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~-~~~~i~liDTP 94 (720)
T TIGR00490 16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEG-NEYLINLIDTP 94 (720)
T ss_pred cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecC-CceEEEEEeCC
Confidence 345689999999999999999998743110 0101112334333222 2445 56789999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158 78 GLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELE 151 (225)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~ 151 (225)
|+.++. .... .+...+|++|+|+|+.......+...++.+.+. ..|.++++||+|...
T Consensus 95 G~~~f~-------~~~~----~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 95 GHVDFG-------GDVT----RAMRAVDGAIVVVCAVEGVMPQTETVLRQALKE-----NVKPVLFINKVDRLI 152 (720)
T ss_pred CccccH-------HHHH----HHHHhcCEEEEEEecCCCCCccHHHHHHHHHHc-----CCCEEEEEEChhccc
Confidence 998752 1122 234466999999999767666666666554332 257789999999764
No 265
>PTZ00258 GTP-binding protein; Provisional
Probab=99.38 E-value=4.9e-12 Score=105.27 Aligned_cols=92 Identities=17% Similarity=0.260 Sum_probs=69.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc----------------eEEEEeCCCC
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ----------------VVNVIDTPGL 79 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~----------------~~~liDtPG~ 79 (225)
....++|+++|.+|+|||||+|+|++... .....+++|..+....+.+++.+ .+.++||||+
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~--~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGL 95 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQV--PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGL 95 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcc--cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCc
Confidence 35678999999999999999999998775 33346788888888777764322 4899999999
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeC
Q 036158 80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSV 113 (225)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~ 113 (225)
.........+...+...+ ..+|++++|+|.
T Consensus 96 v~ga~~g~gLg~~fL~~I----r~aD~il~VVd~ 125 (390)
T PTZ00258 96 VKGASEGEGLGNAFLSHI----RAVDGIYHVVRA 125 (390)
T ss_pred CcCCcchhHHHHHHHHHH----HHCCEEEEEEeC
Confidence 866554455555555544 355999999997
No 266
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.38 E-value=3.7e-12 Score=89.78 Aligned_cols=164 Identities=15% Similarity=0.116 Sum_probs=101.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
...+.+.++|--++||||++|.+...... .....|.....+.+.- +...+.+||.||.. .++.+
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~----edmiptvGfnmrk~tk-gnvtiklwD~gGq~-----------rfrsm 81 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYL----EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQP-----------RFRSM 81 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccch----hhhcccccceeEEecc-CceEEEEEecCCCc-----------cHHHH
Confidence 35688999999999999999998854421 1223455555555543 56689999999964 45667
Q ss_pred HhhcCCCccEEEEEEeCCCC--CCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNR--FSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
+..+++++++++||+|+.++ ++..-.++...+.+- .=...|++|+.||.|....- ...+...+ -.+..
T Consensus 82 WerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~--~l~gip~LVLGnK~d~~~AL--~~~~li~r------mgL~s 151 (186)
T KOG0075|consen 82 WERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKP--SLTGIPLLVLGNKIDLPGAL--SKIALIER------MGLSS 151 (186)
T ss_pred HHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcch--hhcCCcEEEecccccCcccc--cHHHHHHH------hCccc
Confidence 77888999999999998632 333333333333221 11347999999999976553 32222222 11111
Q ss_pred HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
-....++-|. .|.+...+++..++++.+.-+.
T Consensus 152 itdREvcC~s----iScke~~Nid~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 152 ITDREVCCFS----ISCKEKVNIDITLDWLIEHSKS 183 (186)
T ss_pred cccceEEEEE----EEEcCCccHHHHHHHHHHHhhh
Confidence 1112233232 2334458899999999776544
No 267
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.38 E-value=3.8e-12 Score=101.55 Aligned_cols=86 Identities=20% Similarity=0.244 Sum_probs=65.6
Q ss_pred EEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc----------------eEEEEeCCCCCCCCCC
Q 036158 22 LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ----------------VVNVIDTPGLFDSSAD 85 (225)
Q Consensus 22 i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~----------------~~~liDtPG~~~~~~~ 85 (225)
|+++|.+|+|||||+|+|++... .....+++|.......+.+++.+ .+.++||||+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~--~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA--EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC--ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 58999999999999999999886 23446788888887777774432 4999999999976555
Q ss_pred cHHHHHHHHHHHhhcCCCccEEEEEEeC
Q 036158 86 SEFVSKEIVKCIGMTKDGIHAVLVVFSV 113 (225)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~ii~v~~~ 113 (225)
...+...+...+ ..+|++++|+++
T Consensus 79 ~~glg~~fL~~i----~~~D~li~VV~~ 102 (274)
T cd01900 79 GEGLGNKFLSHI----REVDAIAHVVRC 102 (274)
T ss_pred hhHHHHHHHHHH----HhCCEEEEEEeC
Confidence 555555555443 356999999986
No 268
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=1.5e-10 Score=81.82 Aligned_cols=162 Identities=12% Similarity=0.088 Sum_probs=96.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEE-EeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRT-MLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
..+++++|.+.+|||||+-+..+...-..-. .....+.....+ +......+.+|||.|.. .++...
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afv--sTvGidFKvKTvyr~~kRiklQiwDTagqE-----------ryrtiT 87 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFV--STVGIDFKVKTVYRSDKRIKLQIWDTAGQE-----------RYRTIT 87 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhcccccccee--eeeeeeEEEeEeeecccEEEEEEEecccch-----------hhhHHH
Confidence 4689999999999999999999877432211 111222222222 22122379999999964 244444
Q ss_pred hhcCCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
-.++++++++|++.|+...-+-. -..+...++... -...|+++|.||+|.-... .+. .+..+.++++.
T Consensus 88 TayyRgamgfiLmyDitNeeSf~svqdw~tqIktys--w~naqvilvgnKCDmd~eR--vis-------~e~g~~l~~~L 156 (193)
T KOG0093|consen 88 TAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYS--WDNAQVILVGNKCDMDSER--VIS-------HERGRQLADQL 156 (193)
T ss_pred HHHhhccceEEEEEecCCHHHHHHHHHHHHHheeee--ccCceEEEEecccCCccce--eee-------HHHHHHHHHHh
Confidence 56788999999999997321111 122333333331 1357999999999964332 111 12245566666
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
|..+ ..+|++...+++++++++...+-+
T Consensus 157 Gfef------FEtSaK~NinVk~~Fe~lv~~Ic~ 184 (193)
T KOG0093|consen 157 GFEF------FETSAKENINVKQVFERLVDIICD 184 (193)
T ss_pred ChHH------hhhcccccccHHHHHHHHHHHHHH
Confidence 6532 234455557777777777655544
No 269
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.36 E-value=1.4e-11 Score=88.39 Aligned_cols=162 Identities=17% Similarity=0.133 Sum_probs=102.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEE--EEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQ--RTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
++++.|+|.+-+|||+|+..++..+...-. .+|...+.. .+++.+| .++.||||.|. +.++
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaels----dptvgvdffarlie~~pg~riklqlwdtagq-----------erfr 72 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELS----DPTVGVDFFARLIELRPGYRIKLQLWDTAGQ-----------ERFR 72 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccC----CCccchHHHHHHHhcCCCcEEEEEEeeccch-----------HHHH
Confidence 578999999999999999999977643221 222222221 1222233 37899999994 5677
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEEGA-AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
...++++++.-++++|.|++.+.+-+..+ +++..+-..+...+.-.++|.+|.|+....+-+-++ .+.+.
T Consensus 73 sitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EE---------aEklA 143 (213)
T KOG0091|consen 73 SITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEE---------AEKLA 143 (213)
T ss_pred HHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHH---------HHHHH
Confidence 77888999999999999998665544433 223333233322333456778899976443222221 45566
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
..||-.+. .+|++++.++++....|.+-+..
T Consensus 144 a~hgM~FV------ETSak~g~NVeEAF~mlaqeIf~ 174 (213)
T KOG0091|consen 144 ASHGMAFV------ETSAKNGCNVEEAFDMLAQEIFQ 174 (213)
T ss_pred HhcCceEE------EecccCCCcHHHHHHHHHHHHHH
Confidence 66664322 44566778999888887765543
No 270
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.36 E-value=7.3e-12 Score=103.11 Aligned_cols=88 Identities=19% Similarity=0.219 Sum_probs=66.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC----------------ceEEEEeCCCCCCCC
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG----------------QVVNVIDTPGLFDSS 83 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~liDtPG~~~~~ 83 (225)
++|+++|.+|+|||||+|+|++... .....+++|..+....+.+++. ..+.++||||+....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~--~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGA--EAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC--eecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 6899999999999999999999884 2234677887887766666432 149999999998755
Q ss_pred CCcHHHHHHHHHHHhhcCCCccEEEEEEeC
Q 036158 84 ADSEFVSKEIVKCIGMTKDGIHAVLVVFSV 113 (225)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~ 113 (225)
...+.+...+...+ ..+|++++|+|+
T Consensus 81 ~~g~glg~~fL~~i----~~aD~li~VVd~ 106 (364)
T PRK09601 81 SKGEGLGNQFLANI----REVDAIVHVVRC 106 (364)
T ss_pred ChHHHHHHHHHHHH----HhCCEEEEEEeC
Confidence 44444555555443 456999999997
No 271
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.36 E-value=3.2e-12 Score=99.54 Aligned_cols=176 Identities=14% Similarity=0.097 Sum_probs=105.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccc-cCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcH--HHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKS-KAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE--FVSKE 92 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~ 92 (225)
....+++++.|.+|+|||||||.++....... +...++.|...+... -+.+++++|.||++.+....+ +-+..
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~----v~~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH----VGKSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee----ccceEEEEecCCcccccCCccCcchHhH
Confidence 46679999999999999999999998764332 222555566555443 377899999999664432211 11222
Q ss_pred HH-HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158 93 IV-KCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 171 (225)
Q Consensus 93 ~~-~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (225)
+. .+..... ..--+++.+|++-++...|...+.++.+. ..|+.+|+||+|+..+-......... +....++.
T Consensus 209 ~t~~Y~leR~-nLv~~FLLvd~sv~i~~~D~~~i~~~ge~-----~VP~t~vfTK~DK~k~~~~~~kKp~~-~i~~~f~~ 281 (320)
T KOG2486|consen 209 FTKSYLLERE-NLVRVFLLVDASVPIQPTDNPEIAWLGEN-----NVPMTSVFTKCDKQKKVKRTGKKPGL-NIKINFQG 281 (320)
T ss_pred hHHHHHHhhh-hhheeeeeeeccCCCCCCChHHHHHHhhc-----CCCeEEeeehhhhhhhccccccCccc-cceeehhh
Confidence 22 2222222 33344555566556667777888888874 38999999999987553111111111 12223444
Q ss_pred HHHHcCCcEEEeeCCCc---cccccHHHHHHHHHHHHHHH
Q 036158 172 ILQLCDNRCVLFDNKTK---DTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 172 ~~~~~~~~~~~~~~~~~---~~~~~~~~v~~l~~~i~~~~ 208 (225)
+++.|- ....+ .|+.+..+++.|+-.|.+..
T Consensus 282 l~~~~f------~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~~ 315 (320)
T KOG2486|consen 282 LIRGVF------LVDLPWIYVSSVTSLGRDLLLLHIAQLR 315 (320)
T ss_pred ccccce------eccCCceeeecccccCceeeeeehhhhh
Confidence 554432 22222 45566688888887776543
No 272
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=2.4e-11 Score=107.75 Aligned_cols=121 Identities=21% Similarity=0.256 Sum_probs=92.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccC----------------CCCCceeEEEEEEEEeeCC-ceEEEEeCCC
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKA----------------GSSGVTKTCEMQRTMLKDG-QVVNVIDTPG 78 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~-~~~~liDtPG 78 (225)
.....+|+++|+..+|||||..+|+-........ ...+.|.......+.| .+ ..++||||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~-~~~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW-KGDYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE-cCceEEEEeCCCC
Confidence 4567899999999999999998887554322211 1246788888888999 64 9999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158 79 LFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN 153 (225)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~ 153 (225)
+.|+. -++.+ ...-.|++++|+|+...........++...+. ..|.++++||+|.+..+
T Consensus 86 HVDFt-------~EV~r----slrvlDgavvVvdaveGV~~QTEtv~rqa~~~-----~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 86 HVDFT-------IEVER----SLRVLDGAVVVVDAVEGVEPQTETVWRQADKY-----GVPRILFVNKMDRLGAD 144 (697)
T ss_pred ccccH-------HHHHH----HHHhhcceEEEEECCCCeeecHHHHHHHHhhc-----CCCeEEEEECccccccC
Confidence 99983 22222 23344999999999888888887888777664 37999999999988664
No 273
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=2.8e-11 Score=99.91 Aligned_cols=159 Identities=21% Similarity=0.288 Sum_probs=119.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCcc-ccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158 21 NLVLVGRTGNGKSATANSILGKRA-FKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (225)
.|+..|+...|||||+.+++|... ........+.|.+..++.... ++..+.++|.||+.++ +..++ .
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~-~d~~~~fIDvpgh~~~----------i~~mi-a 69 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL-EDGVMGFIDVPGHPDF----------ISNLL-A 69 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC-CCCceEEeeCCCcHHH----------HHHHH-h
Confidence 588899999999999999998753 223345678999999999988 5669999999998743 23332 3
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158 100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 179 (225)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (225)
.....|..++|+++++.+...+.+.+..+.. |+. ++.++|+||+|..... .+++. .+++++....
T Consensus 70 g~~~~d~alLvV~~deGl~~qtgEhL~iLdl-lgi---~~giivltk~D~~d~~--r~e~~--------i~~Il~~l~l- 134 (447)
T COG3276 70 GLGGIDYALLVVAADEGLMAQTGEHLLILDL-LGI---KNGIIVLTKADRVDEA--RIEQK--------IKQILADLSL- 134 (447)
T ss_pred hhcCCceEEEEEeCccCcchhhHHHHHHHHh-cCC---CceEEEEeccccccHH--HHHHH--------HHHHHhhccc-
Confidence 3457799999999988999888888877765 444 6889999999976553 34444 3445555442
Q ss_pred EEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158 180 CVLFDNKTKDTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 180 ~~~~~~~~~~~~~~~~~v~~l~~~i~~~~ 208 (225)
.-.+....|+.+++++++|...|.++.
T Consensus 135 --~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 135 --ANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred --ccccccccccccCCCHHHHHHHHHHhh
Confidence 223345677788999999999999998
No 274
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=1.7e-11 Score=96.22 Aligned_cols=178 Identities=18% Similarity=0.224 Sum_probs=120.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCcc------------c--cccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCC
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRA------------F--KSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~------------~--~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (225)
.+++.+|+.+|+.+.|||||..+|+..-. . .......+.|.......++. ..+++..+|+||+-|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet-~~rhyahVDcPGHaD 87 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD 87 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec-CCceEEeccCCChHH
Confidence 57889999999999999999988864321 0 01122457788877777787 889999999999865
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHh
Q 036158 82 SSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL 161 (225)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~ 161 (225)
+ +.+.|..++ ..|..|+|+.+.+..-+..++.+...++. +- +.+++++||+|...+. +.++...
T Consensus 88 Y------vKNMItgAa-----qmDgAILVVsA~dGpmPqTrEHiLlarqv-Gv---p~ivvflnK~Dmvdd~-ellelVe 151 (394)
T COG0050 88 Y------VKNMITGAA-----QMDGAILVVAATDGPMPQTREHILLARQV-GV---PYIVVFLNKVDMVDDE-ELLELVE 151 (394)
T ss_pred H------HHHHhhhHH-----hcCccEEEEEcCCCCCCcchhhhhhhhhc-CC---cEEEEEEecccccCcH-HHHHHHH
Confidence 4 222222222 45999999998777777777766555543 22 5788899999988653 4556566
Q ss_pred hhcCCchHHHHHHHcCCc--EEEe-eCCC----ccccccHHHHHHHHHHHHHHHHHcCCCC
Q 036158 162 GRECPKPLKEILQLCDNR--CVLF-DNKT----KDTAKRTEQVGKLLSLVNSVIVQNGGQP 215 (225)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~--~~~~-~~~~----~~~~~~~~~v~~l~~~i~~~~~~~~~~~ 215 (225)
.+ ++++++.++.. -.++ ..+. ...+.-...+.+|++.+.++++...+..
T Consensus 152 mE-----vreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~~ 207 (394)
T COG0050 152 ME-----VRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERDI 207 (394)
T ss_pred HH-----HHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCcc
Confidence 66 89999988764 1111 1110 1111234577899999998887766553
No 275
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.33 E-value=7.5e-11 Score=89.95 Aligned_cols=163 Identities=19% Similarity=0.139 Sum_probs=99.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
..+|+++|.+|+|||+|+..+++...... ..+...........+. .....+.|+||+|..++. .+..
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~-y~ptied~y~k~~~v~-~~~~~l~ilDt~g~~~~~-----------~~~~ 69 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVED-YDPTIEDSYRKELTVD-GEVCMLEILDTAGQEEFS-----------AMRD 69 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccc-cCCCccccceEEEEEC-CEEEEEEEEcCCCcccCh-----------HHHH
Confidence 57899999999999999999887775333 2222223333333333 133478899999955442 2223
Q ss_pred hcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158 99 MTKDGIHAVLVVFSVRNRFSEEEG-AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
.+....|++++|++++++-+-++. .+.+.+.+..+. ...|+++|.||+|+........++ -+.+...++
T Consensus 70 ~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~-~~~PivlVGNK~Dl~~~R~V~~ee---------g~~la~~~~ 139 (196)
T KOG0395|consen 70 LYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGR-DDVPIILVGNKCDLERERQVSEEE---------GKALARSWG 139 (196)
T ss_pred HhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCCEEEEEEcccchhccccCHHH---------HHHHHHhcC
Confidence 455677999999999866554443 344455333222 346999999999976533112221 233444444
Q ss_pred CcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
..+ + ..||+...++++++..+.+.+..
T Consensus 140 ~~f--~----E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 140 CAF--I----ETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred CcE--E----EeeccCCcCHHHHHHHHHHHHHh
Confidence 432 2 23444447888888888877665
No 276
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=99.32 E-value=5.8e-10 Score=87.05 Aligned_cols=129 Identities=16% Similarity=0.049 Sum_probs=78.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCC-ccccccCCCCCceeEEEEEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGK-RAFKSKAGSSGVTKTCEMQRTMLK--DGQVVNVIDTPGLFDSSADSEFVSKE 92 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~-~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~ 92 (225)
..+...|+|+|++++|||+|+|.|++. ..+........+|+........++ .+..+.++||||+.+...........
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence 356688999999999999999999998 356665555667776665555442 35789999999999775433111112
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHH-----------hcccccccEEEEEecCCC
Q 036158 93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESL-----------FGKKISDYMIVVFTGGDE 149 (225)
Q Consensus 93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~~~~vv~~k~D~ 149 (225)
+...... -++++||.++.. ....+...+..+.+. .........+.|+..++.
T Consensus 84 ~~~l~~l---lss~~i~n~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvRD~~~ 146 (224)
T cd01851 84 LFALATL---LSSVLIYNSWET--ILGDDLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVRDFSL 146 (224)
T ss_pred HHHHHHH---HhCEEEEeccCc--ccHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEecCcC
Confidence 2221111 348888888764 233343343333321 111233456666666654
No 277
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=8.5e-11 Score=83.50 Aligned_cols=161 Identities=16% Similarity=0.166 Sum_probs=93.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
-++++++|+.|+|||-|+..+.....-+..+...+.........+-. ...++.+|||.|. +.++.-..
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGg-K~vKLQIWDTAGQ-----------ErFRSVtR 76 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGG-KTVKLQIWDTAGQ-----------ERFRSVTR 76 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecC-cEEEEEEeecccH-----------HHHHHHHH
Confidence 47899999999999999999886554222222222222222222211 2238999999994 45677777
Q ss_pred hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc-ccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158 99 MTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFG-KKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
.+++++.+.++|.|++.+-+-. .+-.|+..... ......++++.||.|+-+..+.+ +.+.-+.|.
T Consensus 77 sYYRGAAGAlLVYD~Tsrdsfn--aLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~Vt------------flEAs~Faq 142 (214)
T KOG0086|consen 77 SYYRGAAGALLVYDITSRDSFN--ALTNWLTDARTLASPNIVVILCGNKKDLDPEREVT------------FLEASRFAQ 142 (214)
T ss_pred HHhccccceEEEEeccchhhHH--HHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhh------------HHHHHhhhc
Confidence 8999999999999998543222 23333332210 11124466667888876554222 222333333
Q ss_pred CcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158 178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~ 208 (225)
.+...| ..+|+.++.++++.+-...+-+
T Consensus 143 Enel~f---lETSa~TGeNVEEaFl~c~~tI 170 (214)
T KOG0086|consen 143 ENELMF---LETSALTGENVEEAFLKCARTI 170 (214)
T ss_pred ccceee---eeecccccccHHHHHHHHHHHH
Confidence 322222 2345567788888776655433
No 278
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=1.1e-10 Score=81.79 Aligned_cols=160 Identities=14% Similarity=0.153 Sum_probs=101.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
.++.+|+.+|-.++||||++..|.-... .....|.......+.+ .+..+++||..|.+ .++..
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-----~~~ipTvGFnvetVty-kN~kfNvwdvGGqd-----------~iRpl 77 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQS-----VTTIPTVGFNVETVTY-KNVKFNVWDVGGQD-----------KIRPL 77 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCC-----cccccccceeEEEEEe-eeeEEeeeeccCch-----------hhhHH
Confidence 4579999999999999999988764332 1233455666667777 78899999999954 56777
Q ss_pred HhhcCCCccEEEEEEeCCCC--CCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC-cccHHHHhhhcCCchHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNR--FSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN-DETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~-~~~~~~~~~~~~~~~~~~~~ 173 (225)
+..++.+..++|||+|..++ +++.-.++...+.+. +--..+++|..||-|+.... +..+.++++- -
T Consensus 78 WrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~--em~~~~~LvlANkQDlp~A~~pqei~d~leL---------e 146 (180)
T KOG0071|consen 78 WRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDR--EMRDAIILILANKQDLPDAMKPQEIQDKLEL---------E 146 (180)
T ss_pred HHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCH--hhhcceEEEEecCcccccccCHHHHHHHhcc---------c
Confidence 88899999999999987543 222222233333221 11235788889999976554 2233333322 1
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~ 208 (225)
..-+.++++-.. ++..+.++.+-+.++.+..
T Consensus 147 ~~r~~~W~vqp~----~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 147 RIRDRNWYVQPS----CALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred cccCCccEeecc----ccccchhHHHHHHHHHhhc
Confidence 122344554433 3444577777666665543
No 279
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.30 E-value=1.6e-11 Score=87.64 Aligned_cols=167 Identities=13% Similarity=0.109 Sum_probs=101.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
.-.++|+++|.-=+|||||+=...........-.............++- ..-.+.||||.|...+ -..
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed-~ra~L~IWDTAGQErf-----------HAL 78 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVED-CRADLHIWDTAGQERF-----------HAL 78 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhccccccc-ceeeeeeeeccchHhh-----------hcc
Confidence 4458999999999999999976664442111000000011111111211 2236899999996532 111
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
--.++++.+++++|+|++++-+-. -+.+...++..+|.. ..++||.||+|+-+....+..+ .....+.
T Consensus 79 GPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGne--i~l~IVGNKiDLEeeR~Vt~qe---------Ae~YAes 147 (218)
T KOG0088|consen 79 GPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNE--IELLIVGNKIDLEEERQVTRQE---------AEAYAES 147 (218)
T ss_pred CceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCe--eEEEEecCcccHHHhhhhhHHH---------HHHHHHh
Confidence 124678899999999998553322 244566677777764 6789999999975543222222 3344455
Q ss_pred cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
.|..|+ .+||+...+|.+|++.+-+.+.+..
T Consensus 148 vGA~y~------eTSAk~N~Gi~elFe~Lt~~MiE~~ 178 (218)
T KOG0088|consen 148 VGALYM------ETSAKDNVGISELFESLTAKMIEHS 178 (218)
T ss_pred hchhhe------ecccccccCHHHHHHHHHHHHHHHh
Confidence 555443 4566677999999998887666543
No 280
>PRK12740 elongation factor G; Reviewed
Probab=99.29 E-value=4.4e-11 Score=107.51 Aligned_cols=111 Identities=21% Similarity=0.260 Sum_probs=77.3
Q ss_pred EcCCCCCHHHHHHHHhCCcccccc----------------CCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHH
Q 036158 25 VGRTGNGKSATANSILGKRAFKSK----------------AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEF 88 (225)
Q Consensus 25 ~G~~g~GKSSlin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~ 88 (225)
+|+.|+|||||+++|+........ ....+.|.......+.+ .+..+++|||||..++
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~i~liDtPG~~~~------ 73 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-KGHKINLIDTPGHVDF------ 73 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-CCEEEEEEECCCcHHH------
Confidence 599999999999999654322110 01245666677777888 7889999999998642
Q ss_pred HHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158 89 VSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED 152 (225)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~ 152 (225)
...+. .....+|++++|+|+...........+..+... ..|+++|+||+|....
T Consensus 74 -~~~~~----~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~-----~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 74 -TGEVE----RALRVLDGAVVVVCAVGGVEPQTETVWRQAEKY-----GVPRIIFVNKMDRAGA 127 (668)
T ss_pred -HHHHH----HHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence 11222 233466999999999866666666666555442 3789999999997654
No 281
>PRK13768 GTPase; Provisional
Probab=99.29 E-value=4.1e-11 Score=95.18 Aligned_cols=134 Identities=16% Similarity=0.130 Sum_probs=77.4
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCC
Q 036158 70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDE 149 (225)
Q Consensus 70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~ 149 (225)
.+.++||||..+.... ...+..+.+.+.... .+++++|+|+....+..+.....++..........|+++|+||+|.
T Consensus 98 ~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~--~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~ 174 (253)
T PRK13768 98 DYVLVDTPGQMELFAF-RESGRKLVERLSGSS--KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADL 174 (253)
T ss_pred CEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcC--CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhh
Confidence 6999999997654321 333444555544332 7999999999755555555544444322111234899999999998
Q ss_pred CCCCcccHHHHhhhcC-------------------CchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 150 LEDNDETLEDYLGREC-------------------PKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 150 ~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
.... ..+....... +..+.+.++..+..+.. .+.|+.++.++++|++.|.+.+..
T Consensus 175 ~~~~--~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~v----i~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 175 LSEE--ELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRV----IPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred cCch--hHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcE----EEEECCCCcCHHHHHHHHHHHcCC
Confidence 8664 3332222100 11122234444432211 233445668999999999888765
Q ss_pred cC
Q 036158 211 NG 212 (225)
Q Consensus 211 ~~ 212 (225)
++
T Consensus 249 ~~ 250 (253)
T PRK13768 249 GE 250 (253)
T ss_pred CC
Confidence 43
No 282
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.27 E-value=1.9e-11 Score=85.65 Aligned_cols=123 Identities=16% Similarity=0.180 Sum_probs=85.9
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHH
Q 036158 13 TSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKE 92 (225)
Q Consensus 13 ~~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~ 92 (225)
+++....++|+++|--++||||++..|.+.++.+..+ |.......++..+..++++||..|. +.
T Consensus 11 ks~t~rEirilllGldnAGKTT~LKqL~sED~~hltp-----T~GFn~k~v~~~g~f~LnvwDiGGq-----------r~ 74 (185)
T KOG0074|consen 11 KSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTP-----TNGFNTKKVEYDGTFHLNVWDIGGQ-----------RG 74 (185)
T ss_pred cCCCcceEEEEEEecCCCcchhHHHHHccCChhhccc-----cCCcceEEEeecCcEEEEEEecCCc-----------cc
Confidence 4666888999999999999999999999988754422 3333334455535579999999994 35
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCC-CCHH-HHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158 93 IVKCIGMTKDGIHAVLVVFSVRNR-FSEE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDN 153 (225)
Q Consensus 93 ~~~~~~~~~~~~~~ii~v~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~ 153 (225)
++.+|+.++.++|.+|||+|..+. ...+ ..++.+.+.+. +-...|+++.-||-|.+...
T Consensus 75 IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleee--Kl~~vpvlIfankQdlltaa 135 (185)
T KOG0074|consen 75 IRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEE--KLAEVPVLIFANKQDLLTAA 135 (185)
T ss_pred cchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhh--hhhccceeehhhhhHHHhhc
Confidence 677888899999999999997532 2211 12222222221 01347889999999977654
No 283
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.26 E-value=8.6e-11 Score=106.32 Aligned_cols=119 Identities=16% Similarity=0.248 Sum_probs=78.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccC--------------CCCCceeEEEEEEEEe--e-CCceEEEEeCCCC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKA--------------GSSGVTKTCEMQRTML--K-DGQVVNVIDTPGL 79 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~--------------~~~~~t~~~~~~~~~~--~-~~~~~~liDtPG~ 79 (225)
....+|+++|+.++|||||+.+|+......... ...+.|.......+.| . .+..++|+||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 456789999999999999999997543211100 0122343333333332 1 3567999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158 80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELE 151 (225)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~ 151 (225)
.++. ..+. .....+|++|+|+|+.......+...++...+. ..|+++++||+|...
T Consensus 98 ~df~-------~~~~----~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~-----~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 98 VDFG-------GDVT----RAMRAVDGAIVVVDAVEGVMPQTETVLRQALRE-----RVKPVLFINKVDRLI 153 (731)
T ss_pred cChH-------HHHH----HHHHhcCEEEEEEECCCCCCccHHHHHHHHHHc-----CCCeEEEEECchhhc
Confidence 8752 2222 333456999999999877777777777665442 257799999999763
No 284
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.26 E-value=4.4e-11 Score=95.08 Aligned_cols=163 Identities=18% Similarity=0.200 Sum_probs=107.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
.+.+.|+|+|-||+||||||++|++....+. ..-..|.++..+...+|.+..+.+.||-||..- -...+...+...
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~--drLFATLDpT~h~a~Lpsg~~vlltDTvGFisd--LP~~LvaAF~AT 251 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPN--DRLFATLDPTLHSAHLPSGNFVLLTDTVGFISD--LPIQLVAAFQAT 251 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCcc--chhheeccchhhhccCCCCcEEEEeechhhhhh--CcHHHHHHHHHH
Confidence 3458899999999999999999996665322 345678888888889999999999999999732 223344444433
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcc-c--ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGA-AIHILESLFGK-K--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 172 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~-~~~~l~~~~~~-~--~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~ 172 (225)
+.. .-.+|+++.|.|++++.-..+++ .+..+.++ +- + ....++=|-||.|.-++. .++ +
T Consensus 252 Lee-VaeadlllHvvDiShP~ae~q~e~Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e~~~---~e~---E--------- 314 (410)
T KOG0410|consen 252 LEE-VAEADLLLHVVDISHPNAEEQRETVLHVLNQI-GVPSEPKLQNMIEVDNKIDYEEDE---VEE---E--------- 314 (410)
T ss_pred HHH-HhhcceEEEEeecCCccHHHHHHHHHHHHHhc-CCCcHHHHhHHHhhcccccccccc---Ccc---c---------
Confidence 322 22569999999998776555544 44444443 32 1 123466677787755442 110 0
Q ss_pred HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
=++....|+.++.++++++..+...+..
T Consensus 315 ----------~n~~v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 315 ----------KNLDVGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred ----------cCCccccccccCccHHHHHHHHHHHhhh
Confidence 0123455667788999999888766654
No 285
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=1.7e-10 Score=98.09 Aligned_cols=144 Identities=21% Similarity=0.264 Sum_probs=102.2
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhCCcccc-----------------------------ccCCCCCceeEEEEEEEE
Q 036158 14 SPSNGERNLVLVGRTGNGKSATANSILGKRAFK-----------------------------SKAGSSGVTKTCEMQRTM 64 (225)
Q Consensus 14 ~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~ 64 (225)
+....++.++++|+..+|||||...|+-.-... ......+.|.......++
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 445688999999999999999998876321100 112245778888888888
Q ss_pred eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhccccc
Q 036158 65 LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNR-------FSEEEGAAIHILESLFGKKIS 137 (225)
Q Consensus 65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~ 137 (225)
. ....++|+|+||+.++. -..+ .....+|+.+||+|+... .....++.+..++. ++.
T Consensus 252 s-~~~~~tliDaPGhkdFi------~nmi-----~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~-Lgi--- 315 (603)
T KOG0458|consen 252 S-KSKIVTLIDAPGHKDFI------PNMI-----SGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRS-LGI--- 315 (603)
T ss_pred c-CceeEEEecCCCccccc------hhhh-----ccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHH-cCc---
Confidence 6 77899999999988773 1112 234467999999998632 12223555555554 443
Q ss_pred ccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH-HHcCC
Q 036158 138 DYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL-QLCDN 178 (225)
Q Consensus 138 ~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 178 (225)
..++|++||+|.+.=++..+++.... +...+ +.||+
T Consensus 316 ~qlivaiNKmD~V~Wsq~RF~eIk~~-----l~~fL~~~~gf 352 (603)
T KOG0458|consen 316 SQLIVAINKMDLVSWSQDRFEEIKNK-----LSSFLKESCGF 352 (603)
T ss_pred ceEEEEeecccccCccHHHHHHHHHH-----HHHHHHHhcCc
Confidence 68999999999998877788888777 77777 77775
No 286
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.25 E-value=9.7e-11 Score=94.16 Aligned_cols=143 Identities=15% Similarity=0.186 Sum_probs=104.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCcccc-----------c--------------------cCCCCCceeEEEEEEEE
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFK-----------S--------------------KAGSSGVTKTCEMQRTM 64 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~-----------~--------------------~~~~~~~t~~~~~~~~~ 64 (225)
....+|++-+|+..-||||||-.|+...... + .....+.|.+..+.-+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 3566899999999999999998888554210 0 00134789998887777
Q ss_pred eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEE
Q 036158 65 LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVF 144 (225)
Q Consensus 65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~ 144 (225)
. ..+++.+.||||+.++ .+ +++ .-..-+|+.|+++|+...+-...+ .-..+..++|- +++++++
T Consensus 83 T-~KRkFIiADTPGHeQY-------TR---NMa-TGASTadlAIlLVDAR~Gvl~QTr-RHs~I~sLLGI---rhvvvAV 146 (431)
T COG2895 83 T-EKRKFIIADTPGHEQY-------TR---NMA-TGASTADLAILLVDARKGVLEQTR-RHSFIASLLGI---RHVVVAV 146 (431)
T ss_pred c-ccceEEEecCCcHHHH-------hh---hhh-cccccccEEEEEEecchhhHHHhH-HHHHHHHHhCC---cEEEEEE
Confidence 7 8899999999998643 22 222 233466999999999866655443 34455555665 7999999
Q ss_pred ecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158 145 TGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 179 (225)
Q Consensus 145 ~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (225)
||+|+...+++.+++...+ ...+.+..+..
T Consensus 147 NKmDLvdy~e~~F~~I~~d-----y~~fa~~L~~~ 176 (431)
T COG2895 147 NKMDLVDYSEEVFEAIVAD-----YLAFAAQLGLK 176 (431)
T ss_pred eeecccccCHHHHHHHHHH-----HHHHHHHcCCC
Confidence 9999998887788888777 77777777763
No 287
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.25 E-value=3.4e-11 Score=100.07 Aligned_cols=170 Identities=21% Similarity=0.244 Sum_probs=113.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccc-------------cCCCCCceeEEEEEEEEee----CCceEEEEeCCC
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKS-------------KAGSSGVTKTCEMQRTMLK----DGQVVNVIDTPG 78 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~-------------~~~~~~~t~~~~~~~~~~~----~~~~~~liDtPG 78 (225)
.....++.++.+-..|||||..+|+.....-. .....+.|...+.....+. +...++||||||
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG 85 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG 85 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence 35567899999999999999988875432110 1124567777666665553 224799999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHH
Q 036158 79 LFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLE 158 (225)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~ 158 (225)
+.|+.. ++++.+..| .+.++|+|+..+....+.... ...+.. ..-++.|+||+|+... ..+
T Consensus 86 HVDFsY-------EVSRSLAAC----EGalLvVDAsQGveAQTlAN~---YlAle~--~LeIiPViNKIDLP~A---dpe 146 (603)
T COG0481 86 HVDFSY-------EVSRSLAAC----EGALLVVDASQGVEAQTLANV---YLALEN--NLEIIPVLNKIDLPAA---DPE 146 (603)
T ss_pred ccceEE-------EehhhHhhC----CCcEEEEECccchHHHHHHHH---HHHHHc--CcEEEEeeecccCCCC---CHH
Confidence 999852 233333334 899999999877655543322 222222 2578999999997665 555
Q ss_pred HHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCC
Q 036158 159 DYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQP 215 (225)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~ 215 (225)
...++ +.+++ |.. -......||+++.+++++++.|.+-++...+.+
T Consensus 147 rvk~e-----Ie~~i---Gid---~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~ 192 (603)
T COG0481 147 RVKQE-----IEDII---GID---ASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDP 192 (603)
T ss_pred HHHHH-----HHHHh---CCC---cchheeEecccCCCHHHHHHHHHhhCCCCCCCC
Confidence 65555 55555 221 122345688899999999999999888876653
No 288
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=4.1e-11 Score=86.91 Aligned_cols=171 Identities=13% Similarity=0.078 Sum_probs=108.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccc---cCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKS---KAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI 93 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (225)
+....|+++|.-++|||||+.++-....... .+....+|.......+.+ .+.++.+||.-|. +.+
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v-~~~~l~fwdlgGQ-----------e~l 82 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV-CNAPLSFWDLGGQ-----------ESL 82 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee-ccceeEEEEcCCh-----------HHH
Confidence 4567899999999999999977653321111 112334566666677777 6889999999993 455
Q ss_pred HHHHhhcCCCccEEEEEEeCCCC-CCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNR-FSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 172 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~ 172 (225)
++.+..++..+|++|+|+|+.++ .-++....++.+... ..-...|+++..||-|.-... ...+...- +. .
T Consensus 83 rSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~-E~leg~p~L~lankqd~q~~~--~~~El~~~-----~~-~ 153 (197)
T KOG0076|consen 83 RSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVEN-EKLEGAPVLVLANKQDLQNAM--EAAELDGV-----FG-L 153 (197)
T ss_pred HHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHH-HHhcCCchhhhcchhhhhhhh--hHHHHHHH-----hh-h
Confidence 66667777888999999999742 112222233322221 011247999999999965443 33332111 22 1
Q ss_pred HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
.+.-+.+-+.| .+.|+-.+.++++-.+++..-+..+
T Consensus 154 ~e~~~~rd~~~---~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 154 AELIPRRDNPF---QPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhcCCccCcc---ccchhhhcccHHHHHHHHHHHHhhc
Confidence 33334444444 4557778899999999998877776
No 289
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=2.7e-10 Score=96.71 Aligned_cols=173 Identities=18% Similarity=0.181 Sum_probs=113.0
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158 14 SPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI 93 (225)
Q Consensus 14 ~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (225)
....+.+.++|+|++|+||||||.+|...-.-.......++ ..+.-...+.++++.+|. | ..++
T Consensus 64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GP------iTvvsgK~RRiTflEcp~--D--------l~~m 127 (1077)
T COG5192 64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGP------ITVVSGKTRRITFLECPS--D--------LHQM 127 (1077)
T ss_pred ccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCc------eEEeecceeEEEEEeChH--H--------HHHH
Confidence 33456677889999999999999999864321111111111 111222566899999994 1 2233
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
....+ -+|.+++++|+.-++..++++++..+... | -+.++.|+|+.|+.+.. .++.....+..+.+|.++.
T Consensus 128 iDvaK----IaDLVlLlIdgnfGfEMETmEFLnil~~H-G---mPrvlgV~ThlDlfk~~-stLr~~KKrlkhRfWtEiy 198 (1077)
T COG5192 128 IDVAK----IADLVLLLIDGNFGFEMETMEFLNILISH-G---MPRVLGVVTHLDLFKNP-STLRSIKKRLKHRFWTEIY 198 (1077)
T ss_pred HhHHH----hhheeEEEeccccCceehHHHHHHHHhhc-C---CCceEEEEeecccccCh-HHHHHHHHHHhhhHHHHHc
Confidence 33322 45999999999888888888888888763 2 26799999999988654 5777777777778888887
Q ss_pred HHcCCcEEE--eeCCCccccccHHHHHHHHHHHHHH----HHHcCCCCC
Q 036158 174 QLCDNRCVL--FDNKTKDTAKRTEQVGKLLSLVNSV----IVQNGGQPY 216 (225)
Q Consensus 174 ~~~~~~~~~--~~~~~~~~~~~~~~v~~l~~~i~~~----~~~~~~~~~ 216 (225)
+.....|+. .+.++++ ..+-.|..+|.-| +..++.+||
T Consensus 199 qGaKlFylsgV~nGRYpD-----reilnLsRfisVMKfRPl~Wrn~HPy 242 (1077)
T COG5192 199 QGAKLFYLSGVENGRYPD-----REILNLSRFISVMKFRPLEWRNMHPY 242 (1077)
T ss_pred CCceEEEecccccCCCCC-----HHHHHHHHHHhhhcccccccccCCce
Confidence 654444432 3345554 5666666666543 345556665
No 290
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=7.8e-11 Score=102.34 Aligned_cols=175 Identities=17% Similarity=0.180 Sum_probs=111.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEe-----------------eCCceEEEEeCCCCCC
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTML-----------------KDGQVVNVIDTPGLFD 81 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-----------------~~~~~~~liDtPG~~~ 81 (225)
.+.+.++|+..+|||-|+..|.+.++-... ..+.|.......+.. ..-..+.+|||||+..
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqege--aggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEGE--AGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred CceEEEeecccccchHHHHHhhcccccccc--ccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 467999999999999999999988763332 223333322211111 0223589999999765
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCc----ccH
Q 036158 82 SSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDND----ETL 157 (225)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~----~~~ 157 (225)
+ ..++. .-...+|.+|+|+|+.+++.+...+.+..|+.. ..|++|++||+|.+.+-. ..+
T Consensus 553 F--------tnlRs---rgsslC~~aIlvvdImhGlepqtiESi~lLR~r-----ktpFivALNKiDRLYgwk~~p~~~i 616 (1064)
T KOG1144|consen 553 F--------TNLRS---RGSSLCDLAILVVDIMHGLEPQTIESINLLRMR-----KTPFIVALNKIDRLYGWKSCPNAPI 616 (1064)
T ss_pred h--------hhhhh---ccccccceEEEEeehhccCCcchhHHHHHHHhc-----CCCeEEeehhhhhhcccccCCCchH
Confidence 4 22222 233355999999999999999888888888775 379999999999873220 111
Q ss_pred HHHh-------hhcCCchHHHHHHHc---CCc-EEEee--------CCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 158 EDYL-------GRECPKPLKEILQLC---DNR-CVLFD--------NKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 158 ~~~~-------~~~~~~~~~~~~~~~---~~~-~~~~~--------~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
.+.+ .+.++..+..++-.+ |.+ -++|. +..++||.++.+|.+|+-+|.++.+..
T Consensus 617 ~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~ 689 (1064)
T KOG1144|consen 617 VEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKT 689 (1064)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHH
Confidence 1111 111222244443222 222 11232 346889999999999999998887764
No 291
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.22 E-value=3.6e-11 Score=88.80 Aligned_cols=57 Identities=25% Similarity=0.342 Sum_probs=43.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCC
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (225)
...+|+++|.+|+|||||+|+|.+.....++. .+++|+...... -+..+.|+||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~-~~g~T~~~~~~~----~~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAP-IPGETKVWQYIT----LMKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCC-CCCeeEeEEEEE----cCCCEEEEECcCC
Confidence 45789999999999999999999987655533 556666655433 2345899999995
No 292
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.22 E-value=3.7e-10 Score=92.42 Aligned_cols=111 Identities=13% Similarity=0.089 Sum_probs=63.6
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHH-HHHHhcccccccEEEEEec
Q 036158 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHI-LESLFGKKISDYMIVVFTG 146 (225)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~vv~~k 146 (225)
+..++|+||+|..+.. .. + ...+|.+++|++.. +.++.+.++. +.+ ..-++|+||
T Consensus 148 g~d~viieT~Gv~qs~---~~----i-------~~~aD~vlvv~~p~---~gd~iq~~k~gi~E-------~aDIiVVNK 203 (332)
T PRK09435 148 GYDVILVETVGVGQSE---TA----V-------AGMVDFFLLLQLPG---AGDELQGIKKGIME-------LADLIVINK 203 (332)
T ss_pred CCCEEEEECCCCccch---hH----H-------HHhCCEEEEEecCC---chHHHHHHHhhhhh-------hhheEEeeh
Confidence 4679999999988432 11 1 12469999997532 2233333322 333 233899999
Q ss_pred CCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEe-eCCCccccccHHHHHHHHHHHHHHHH
Q 036158 147 GDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLF-DNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 147 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
+|+.+.. .......+ +++.+.....+...+ .+....|+.++.++++|++.|.++.+
T Consensus 204 aDl~~~~--~a~~~~~e-----l~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 204 ADGDNKT--AARRAAAE-----YRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred hcccchh--HHHHHHHH-----HHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 9987653 33333333 444443322110001 12234556677999999999998876
No 293
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=1.1e-09 Score=87.96 Aligned_cols=174 Identities=18% Similarity=0.252 Sum_probs=104.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCc---ccccc--CCCCCceeEEEEEEEEeeCC--------ceEEEEeCCCCCCCC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKR---AFKSK--AGSSGVTKTCEMQRTMLKDG--------QVVNVIDTPGLFDSS 83 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~---~~~~~--~~~~~~t~~~~~~~~~~~~~--------~~~~liDtPG~~~~~ 83 (225)
...++++++|+..+|||||.++|.... .++.. +...+.|.+........+.. ..+.++|+||+.
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa--- 81 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA--- 81 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH---
Confidence 455999999999999999999986432 22211 12334455544444333222 256999999974
Q ss_pred CCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC--cccHHHHh
Q 036158 84 ADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN--DETLEDYL 161 (225)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~--~~~~~~~~ 161 (225)
.+.+.+.....-.|..++|+|+..+......+.+-. .+.+ .+..+||+||+|.++.. ...++...
T Consensus 82 --------sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLii-g~~~----c~klvvvinkid~lpE~qr~ski~k~~ 148 (522)
T KOG0461|consen 82 --------SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLII-GELL----CKKLVVVINKIDVLPENQRASKIEKSA 148 (522)
T ss_pred --------HHHHHHHhhhheeeeeeEEEehhcccccccchhhhh-hhhh----ccceEEEEeccccccchhhhhHHHHHH
Confidence 344444455667799999999976554444444432 2222 26789999999987653 12334333
Q ss_pred hhcCCchHHHHHHHcCC----cEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158 162 GRECPKPLKEILQLCDN----RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG 213 (225)
Q Consensus 162 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~ 213 (225)
.. ++.-++..+. +.+.+... ........+.+|.+.+.+-.-+..+
T Consensus 149 kk-----~~KtLe~t~f~g~~PI~~vsa~--~G~~~~~~i~eL~e~l~s~if~P~R 197 (522)
T KOG0461|consen 149 KK-----VRKTLESTGFDGNSPIVEVSAA--DGYFKEEMIQELKEALESRIFEPKR 197 (522)
T ss_pred HH-----HHHHHHhcCcCCCCceeEEecC--CCccchhHHHHHHHHHHHhhcCCCc
Confidence 33 6666666543 33333322 2223347888998888766544433
No 294
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.18 E-value=6.9e-11 Score=88.37 Aligned_cols=57 Identities=32% Similarity=0.456 Sum_probs=45.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCC
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (225)
...+++++|.+|+|||||+|+|++.....++ ..+++|+..+... + +..+.|+||||+
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~--~--~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVH--L--DKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEE--e--CCCEEEEECcCC
Confidence 3479999999999999999999998876664 3567777655443 2 356899999995
No 295
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.18 E-value=2.1e-10 Score=97.49 Aligned_cols=174 Identities=15% Similarity=0.205 Sum_probs=106.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCC-CCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGS-SGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
....+||+|+|..|+||||||-+|+.....+..+.. +..+.. .-..|+..+.+++||+.-.+. ...+.+
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP----advtPe~vpt~ivD~ss~~~~---~~~l~~--- 75 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP----ADVTPENVPTSIVDTSSDSDD---RLCLRK--- 75 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC----CccCcCcCceEEEecccccch---hHHHHH---
Confidence 466799999999999999999999988754332221 112221 112235667999999853221 122222
Q ss_pred HHHhhcCCCccEEEEEEeCCCC--CCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNR--FSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 172 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~ 172 (225)
..+++|++++|...++. ++.-...++-.+++.++.....|+++|.||.|.......+.+.. +..+
T Consensus 76 -----EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~--------~~pi 142 (625)
T KOG1707|consen 76 -----EIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVN--------TLPI 142 (625)
T ss_pred -----HHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHH--------HHHH
Confidence 23456999999977643 33334556777777777777899999999999887753322321 1222
Q ss_pred HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCC
Q 036158 173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPY 216 (225)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~ 216 (225)
+... .-+.++..+||.+-.++.+++-..++-+.-.-++.|
T Consensus 143 m~~f----~EiEtciecSA~~~~n~~e~fYyaqKaVihPt~PLy 182 (625)
T KOG1707|consen 143 MIAF----AEIETCIECSALTLANVSELFYYAQKAVIHPTSPLY 182 (625)
T ss_pred HHHh----HHHHHHHhhhhhhhhhhHhhhhhhhheeeccCcccc
Confidence 2221 114455666777777777777666555444433333
No 296
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=3.2e-10 Score=85.17 Aligned_cols=120 Identities=13% Similarity=0.201 Sum_probs=73.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
...|+++|.++||||+|+-.|...... ..-+..+.....+.+ +.....|+|.||+... ...+.....
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~-----~TvtSiepn~a~~r~-gs~~~~LVD~PGH~rl-------R~kl~e~~~ 104 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHR-----GTVTSIEPNEATYRL-GSENVTLVDLPGHSRL-------RRKLLEYLK 104 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCcc-----CeeeeeccceeeEee-cCcceEEEeCCCcHHH-------HHHHHHHcc
Confidence 368999999999999999877754321 122233334444455 5556899999998622 122222222
Q ss_pred hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc----cccccEEEEEecCCCCCCC
Q 036158 99 MTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK----KISDYMIVVFTGGDELEDN 153 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~vv~~k~D~~~~~ 153 (225)
.. ..+-+++||+|.- .+...-+...+.+...+-. ....|++++.||-|+....
T Consensus 105 ~~-~~akaiVFVVDSa-~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAk 161 (238)
T KOG0090|consen 105 HN-YSAKAIVFVVDSA-TFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAK 161 (238)
T ss_pred cc-ccceeEEEEEecc-ccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcC
Confidence 11 2778999999985 3333333333333333222 2347899999999988664
No 297
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.15 E-value=5.2e-10 Score=103.06 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=74.2
Q ss_pred CHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC-----------------ceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158 31 GKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG-----------------QVVNVIDTPGLFDSSADSEFVSKEI 93 (225)
Q Consensus 31 GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~liDtPG~~~~~~~~~~~~~~~ 93 (225)
+||||+.+|.+.++... ...+.|.+...+.+.++.. ..+.||||||+..+
T Consensus 473 ~KTtLLD~iR~t~v~~~--EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F----------- 539 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKK--EAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAF----------- 539 (1049)
T ss_pred ccccHHHHHhCCCcccc--cCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHH-----------
Confidence 49999999999987433 3566777777766655211 13899999996533
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELE 151 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~ 151 (225)
..........+|++++|+|+++.+...+.+.+..+... ..|+++|+||+|+.+
T Consensus 540 ~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~-----~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 540 TSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQY-----KTPFVVAANKIDLIP 592 (1049)
T ss_pred HHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHc-----CCCEEEEEECCCCcc
Confidence 11122344578999999999877777777777766653 379999999999864
No 298
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=9.7e-10 Score=90.77 Aligned_cols=119 Identities=15% Similarity=0.179 Sum_probs=86.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccC--------------------CCCCceeEEEEEEEEeeCCceEEEEeC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKA--------------------GSSGVTKTCEMQRTMLKDGQVVNVIDT 76 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~--------------------~~~~~t~~~~~~~~~~~~~~~~~liDt 76 (225)
....+.+++-++.+|||||...|+=.-...... ...+.....-.-.+++ .+..++|+||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y-~~~~iNLLDT 88 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY-ADCLVNLLDT 88 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEecc-CCeEEeccCC
Confidence 456789999999999999997765221111100 0234455555566777 8999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158 77 PGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED 152 (225)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~ 152 (225)
||+.|+..+...+.. .+|..++|+|+-.++.+.+..+++..+-. ..|++-.+||+|...-
T Consensus 89 PGHeDFSEDTYRtLt-----------AvDsAvMVIDaAKGiE~qT~KLfeVcrlR-----~iPI~TFiNKlDR~~r 148 (528)
T COG4108 89 PGHEDFSEDTYRTLT-----------AVDSAVMVIDAAKGIEPQTLKLFEVCRLR-----DIPIFTFINKLDREGR 148 (528)
T ss_pred CCccccchhHHHHHH-----------hhheeeEEEecccCccHHHHHHHHHHhhc-----CCceEEEeeccccccC
Confidence 999998643332222 45999999999889998888888877654 3799999999996544
No 299
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=8.1e-10 Score=89.46 Aligned_cols=139 Identities=17% Similarity=0.283 Sum_probs=84.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEE---------------------------------
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRT--------------------------------- 63 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~--------------------------------- 63 (225)
...+-|+++|..++||||+||.|+..+.. .....+..|++......
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dyp-g~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYP-GLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCC-ccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 45678999999999999999999987743 22222222322222110
Q ss_pred -----EeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhccc
Q 036158 64 -----MLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRN-RFSEEEGAAIHILESLFGKK 135 (225)
Q Consensus 64 -----~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~-~~~~~~~~~~~~l~~~~~~~ 135 (225)
.+++. .+++++||||+-+...+.-...-.+...+.....++|.||+++|+-. .++.+..+.+..++- .+
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG---~E 211 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG---HE 211 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC---Cc
Confidence 00000 26999999999866433211111222333344567899999999851 345555666665544 32
Q ss_pred ccccEEEEEecCCCCCCCcccHHHHhhh
Q 036158 136 ISDYMIVVFTGGDELEDNDETLEDYLGR 163 (225)
Q Consensus 136 ~~~~~~vv~~k~D~~~~~~~~~~~~~~~ 163 (225)
..+-||+||+|..+.. .+-+.+..
T Consensus 212 --dkiRVVLNKADqVdtq--qLmRVyGA 235 (532)
T KOG1954|consen 212 --DKIRVVLNKADQVDTQ--QLMRVYGA 235 (532)
T ss_pred --ceeEEEeccccccCHH--HHHHHHHH
Confidence 5788999999987663 44444443
No 300
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=4.8e-10 Score=89.18 Aligned_cols=175 Identities=17% Similarity=0.211 Sum_probs=102.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcc-ccccCCCCCceeEEEEEE-------------------------EEeeCCce
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRA-FKSKAGSSGVTKTCEMQR-------------------------TMLKDGQV 70 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~-~~~~~~~~~~t~~~~~~~-------------------------~~~~~~~~ 70 (225)
-+..+|+.+|+...|||||..+|.|.-. ..+.....+.|....+.. .+..--+.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 3568999999999999999999997532 111111111111111100 00001247
Q ss_pred EEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCH-HHHHHHHHHHHHhcccccccEEEEEecCCC
Q 036158 71 VNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSE-EEGAAIHILESLFGKKISDYMIVVFTGGDE 149 (225)
Q Consensus 71 ~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~ 149 (225)
+.|+|.||+. .-+..+++. .--.|+.+||+.++.++-+ .+++.+-.| +..+- ++++++=||+|+
T Consensus 88 VSfVDaPGHe----------~LMATMLsG-AAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIigi---k~iiIvQNKIDl 152 (415)
T COG5257 88 VSFVDAPGHE----------TLMATMLSG-AALMDGALLVIAANEPCPQPQTREHLMAL-EIIGI---KNIIIVQNKIDL 152 (415)
T ss_pred EEEeeCCchH----------HHHHHHhcc-hhhhcceEEEEecCCCCCCCchHHHHHHH-hhhcc---ceEEEEecccce
Confidence 9999999964 112222222 2244999999988754322 233333222 23333 899999999998
Q ss_pred CCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCC
Q 036158 150 LEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPY 216 (225)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~ 216 (225)
...+ ...+.|. + +++.++.. +---....+.||.++.+++.|+++|.+.++...+.+.
T Consensus 153 V~~E-~AlE~y~-q-----Ik~FvkGt---~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~ 209 (415)
T COG5257 153 VSRE-RALENYE-Q-----IKEFVKGT---VAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLD 209 (415)
T ss_pred ecHH-HHHHHHH-H-----HHHHhccc---ccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCC
Confidence 7543 3334332 2 34444322 2112235567888899999999999999988766653
No 301
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.12 E-value=2.5e-10 Score=87.94 Aligned_cols=111 Identities=18% Similarity=0.320 Sum_probs=80.6
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
....-+|+++|.+.+|||||+..|+.... ....+..+|..|-.....+ ++-++.++|.||+.+.+.+.....++..
T Consensus 59 KsGdaRValIGfPSVGKStlLs~iT~T~S--eaA~yeFTTLtcIpGvi~y-~ga~IQllDLPGIieGAsqgkGRGRQvi- 134 (364)
T KOG1486|consen 59 KSGDARVALIGFPSVGKSTLLSKITSTHS--EAASYEFTTLTCIPGVIHY-NGANIQLLDLPGIIEGASQGKGRGRQVI- 134 (364)
T ss_pred ccCCeEEEEecCCCccHHHHHHHhhcchh--hhhceeeeEEEeecceEEe-cCceEEEecCcccccccccCCCCCceEE-
Confidence 33458999999999999999999997764 2234667788888888888 8999999999999987665544333322
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK 135 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~ 135 (225)
....-+|.+++|+|+.. ++..++.++.-.+..|-+
T Consensus 135 ---avArtaDlilMvLDatk--~e~qr~~le~ELe~vGiR 169 (364)
T KOG1486|consen 135 ---AVARTADLILMVLDATK--SEDQREILEKELEAVGIR 169 (364)
T ss_pred ---EEeecccEEEEEecCCc--chhHHHHHHHHHHHhcee
Confidence 34456799999999973 344555665544444443
No 302
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.09 E-value=4.9e-10 Score=87.49 Aligned_cols=155 Identities=18% Similarity=0.212 Sum_probs=93.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeC---CceEEEEeCCCCCCCCCCcHHHHHHHH-
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKD---GQVVNVIDTPGLFDSSADSEFVSKEIV- 94 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~liDtPG~~~~~~~~~~~~~~~~- 94 (225)
.++|+-+|.||.|||||+..|++...-.......-.+........++.. ...++++||.|++|-....+. .+.+.
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~S-yk~iVd 120 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDS-YKPIVD 120 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccc-cchHHH
Confidence 6899999999999999999999877422211121122222222333312 237999999999975432211 11111
Q ss_pred -----------------HHHh-hcCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcc
Q 036158 95 -----------------KCIG-MTKDGIHAVLVVFSVR-NRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDE 155 (225)
Q Consensus 95 -----------------~~~~-~~~~~~~~ii~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~ 155 (225)
+.+. -...++|+.+|.+..+ +.+...+.-.++.+.+. .+++.|+.|+|.....
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ldsk------VNIIPvIAKaDtisK~-- 192 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDSK------VNIIPVIAKADTISKE-- 192 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhhh------hhhHHHHHHhhhhhHH--
Confidence 1111 2345789999998664 55666665566555553 7889999999976543
Q ss_pred cHHHHhhhcCCchHHHHHHHcCCcEEEeeCCC
Q 036158 156 TLEDYLGRECPKPLKEILQLCDNRCVLFDNKT 187 (225)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (225)
.+..+... +..-+..-|.+++.|....
T Consensus 193 eL~~FK~k-----imsEL~sngv~IYqfPtDd 219 (406)
T KOG3859|consen 193 ELKRFKIK-----IMSELVSNGVQIYQFPTDD 219 (406)
T ss_pred HHHHHHHH-----HHHHHHhcCceeeeccchH
Confidence 45554433 3334445566777776543
No 303
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.09 E-value=7.9e-10 Score=89.53 Aligned_cols=67 Identities=27% Similarity=0.413 Sum_probs=51.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEF 88 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~ 88 (225)
...++++++|.+|+||||++|+|.+.....+. ..+++|+..+.. .+ +..+.|+||||+........+
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~--~~--~~~~~l~DtPGi~~~~~~~~~ 185 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTG-NRPGVTKAQQWI--KL--GKGLELLDTPGILWPKLEDQE 185 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccC-CCCCeEEEEEEE--Ee--CCcEEEEECCCcCCCCCCcHH
Confidence 35689999999999999999999998865553 356777776543 33 456899999999876544443
No 304
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.08 E-value=8.1e-11 Score=86.22 Aligned_cols=60 Identities=28% Similarity=0.352 Sum_probs=36.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccC------CCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCC
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKA------GSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS 83 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~ 83 (225)
..++++|++|+|||||||+|++.....+.. ....+|+....+.+ .....||||||+.+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l----~~g~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPL----PDGGYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEE----TTSEEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEec----CCCcEEEECCCCCccc
Confidence 789999999999999999999885433211 12234455544443 2246899999998664
No 305
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.08 E-value=3.8e-10 Score=81.83 Aligned_cols=62 Identities=29% Similarity=0.472 Sum_probs=44.6
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCC
Q 036158 14 SPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80 (225)
Q Consensus 14 ~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~ 80 (225)
|......+++++|.+|+|||||+|+|++...... ....+.|+.... +.+ +..+.|+||||+.
T Consensus 78 Sa~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~~~~~~~--~~~--~~~~~i~DtpG~~ 139 (141)
T cd01857 78 SALKENATIGLVGYPNVGKSSLINALVGKKKVSV-SATPGKTKHFQT--IFL--TPTITLCDCPGLV 139 (141)
T ss_pred EecCCCcEEEEECCCCCCHHHHHHHHhCCCceee-CCCCCcccceEE--EEe--CCCEEEEECCCcC
Confidence 4444445899999999999999999998875433 334555555443 444 2368999999985
No 306
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.06 E-value=2.9e-10 Score=86.61 Aligned_cols=57 Identities=30% Similarity=0.353 Sum_probs=41.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCcccc-------ccCCCCCceeEEEEEEEEeeCCceEEEEeCCCC
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFK-------SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~-------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (225)
..+++++|.+|+|||||+|+|++..... ..+..+++|+....... +..+.|+||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~----~~~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL----GNGKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec----CCCCEEEeCcCC
Confidence 4689999999999999999999865321 22344566776655443 225899999996
No 307
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.06 E-value=1.6e-10 Score=84.32 Aligned_cols=122 Identities=20% Similarity=0.154 Sum_probs=77.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCC-CCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAG-SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
....++++++|.-++||||+|.+....- |..... ..++........+.. ++..+.+|||.|..+ +.
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCkgi-fTkdykktIgvdflerqi~v~~-Edvr~mlWdtagqeE-----------fD 83 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCKGI-FTKDYKKTIGVDFLERQIKVLI-EDVRSMLWDTAGQEE-----------FD 83 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhccc-cccccccccchhhhhHHHHhhH-HHHHHHHHHhccchh-----------HH
Confidence 4556899999999999999999987322 211111 111111001111111 344678999999653 34
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDN 153 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~ 153 (225)
...+.+++++.+.++|++-.++.+-+. .++.+.++.-. ...|+++|-||+|+++++
T Consensus 84 aItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~---~~IPtV~vqNKIDlveds 140 (246)
T KOG4252|consen 84 AITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKET---ERIPTVFVQNKIDLVEDS 140 (246)
T ss_pred HHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHh---ccCCeEEeeccchhhHhh
Confidence 445568889999999999876655433 23334444433 348999999999999876
No 308
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.04 E-value=6.9e-10 Score=81.76 Aligned_cols=58 Identities=26% Similarity=0.446 Sum_probs=44.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (225)
....+++++|.+|+||||++|+|++......+ ..+++|+...... + +..+.|+||||+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~-~~~~~t~~~~~~~--~--~~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVG-NVPGTTTSQQEVK--L--DNKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcccccccc-CCCCcccceEEEE--e--cCCEEEEECCCC
Confidence 45688999999999999999999997755443 3456666655433 2 356999999996
No 309
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=2.1e-09 Score=86.24 Aligned_cols=178 Identities=18% Similarity=0.205 Sum_probs=120.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCcc------c--------cccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCC
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRA------F--------KSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~------~--------~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (225)
.+++.+|+-+|+...|||||.-+|+.--. + .......+.|.......++. ..+++.=+|+||+-|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeT-a~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYET-AKRHYAHTDCPGHAD 129 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeec-cccccccCCCCchHH
Confidence 57899999999999999999988863211 0 01122456777776666666 678899999999875
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHh
Q 036158 82 SSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL 161 (225)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~ 161 (225)
+ +.+++..+ ...|+.|+|+.+.+..-+..++.+...++. |- ++++|.+||.|...+. +.++-..
T Consensus 130 Y----------IKNMItGa-aqMDGaILVVaatDG~MPQTrEHlLLArQV-GV---~~ivvfiNKvD~V~d~-e~leLVE 193 (449)
T KOG0460|consen 130 Y----------IKNMITGA-AQMDGAILVVAATDGPMPQTREHLLLARQV-GV---KHIVVFINKVDLVDDP-EMLELVE 193 (449)
T ss_pred H----------HHHhhcCc-cccCceEEEEEcCCCCCcchHHHHHHHHHc-CC---ceEEEEEecccccCCH-HHHHHHH
Confidence 4 33333332 256999999999877777787777666653 33 7899999999988553 4555555
Q ss_pred hhcCCchHHHHHHHcCCc---EEEeeCCC------ccccccHHHHHHHHHHHHHHHHHcCCCC
Q 036158 162 GRECPKPLKEILQLCDNR---CVLFDNKT------KDTAKRTEQVGKLLSLVNSVIVQNGGQP 215 (225)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~---~~~~~~~~------~~~~~~~~~v~~l~~~i~~~~~~~~~~~ 215 (225)
.+ +++++..++.. ...+..+. .........|.+|++.++.+++...+..
T Consensus 194 mE-----~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~ 251 (449)
T KOG0460|consen 194 ME-----IRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDL 251 (449)
T ss_pred HH-----HHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCccccc
Confidence 55 88999887642 22222111 1122234568889999988776655443
No 310
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.03 E-value=1.3e-09 Score=81.94 Aligned_cols=166 Identities=19% Similarity=0.136 Sum_probs=99.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
..+++|||..++|||+|+-+.... .++... ..+..+.....+...++. .+.||||.|..+.. .++
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~-~fp~~y--vPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYD--------rlR-- 70 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTN-AFPEEY--VPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYD--------RLR-- 70 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccC-cCcccc--cCeEEccceEEEEecCCCEEEEeeeecCCCcccc--------ccc--
Confidence 478999999999999999777754 333322 222223333444552133 68999999988763 122
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHH--HHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh----cCCchHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEE--EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR----ECPKPLK 170 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~----~~~~~~~ 170 (225)
-..++.+|+|++++++.++.+-+ ...++-.++++++. .|+++|.+|.|+..+. ...+..... -.....+
T Consensus 71 -plsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~---vpiiLVGtk~DLr~d~-~~~~~l~~~~~~~Vt~~~g~ 145 (198)
T KOG0393|consen 71 -PLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPN---VPIILVGTKADLRDDP-STLEKLQRQGLEPVTYEQGL 145 (198)
T ss_pred -ccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCC---CCEEEEeehHHhhhCH-HHHHHHHhccCCcccHHHHH
Confidence 24788999999999987554444 24456666665543 8999999999988432 222222111 1112234
Q ss_pred HHHHHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158 171 EILQLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 171 ~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~ 208 (225)
++....|. .|+ ..|+.+..++.+.++......
T Consensus 146 ~lA~~iga~~y~------EcSa~tq~~v~~vF~~a~~~~ 178 (198)
T KOG0393|consen 146 ELAKEIGAVKYL------ECSALTQKGVKEVFDEAIRAA 178 (198)
T ss_pred HHHHHhCcceee------eehhhhhCCcHHHHHHHHHHH
Confidence 55555553 222 334445566666665544433
No 311
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.02 E-value=2.1e-09 Score=86.54 Aligned_cols=66 Identities=29% Similarity=0.405 Sum_probs=48.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE 87 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~ 87 (225)
....+++++|.+|+|||||+|+|.+.....+. ..+++|+..+.. .+ +..+.|+||||+........
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~--~~--~~~~~l~DtPG~~~~~~~~~ 181 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWI--KL--SDGLELLDTPGILWPKFEDQ 181 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeecceEEE--Ee--CCCEEEEECCCcccCCCCch
Confidence 34688999999999999999999988765553 456777766543 33 34689999999965543333
No 312
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.01 E-value=8.1e-09 Score=73.60 Aligned_cols=124 Identities=16% Similarity=0.154 Sum_probs=77.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEI 93 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~ 93 (225)
..+..+|+|+|.-++|||+++..|+-........ ...+-.+.....++.+.+- .+.|+||.|+.+.. .++.+
T Consensus 6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e-~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~---~eLpr-- 79 (198)
T KOG3883|consen 6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTE-LHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQ---QELPR-- 79 (198)
T ss_pred hCcceEEEEECCccccHHHHHHHHHhccCCCCCc-cccchhhheeEeeecCCChhheEEEeecccccCch---hhhhH--
Confidence 3556899999999999999998887544321111 1122223333444442332 79999999998651 22222
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHh---cccccccEEEEEecCCCCCCC
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLF---GKKISDYMIVVFTGGDELEDN 153 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~vv~~k~D~~~~~ 153 (225)
-+.+-+|++++|.+..+. +..+.++.|++.. ...-..|++|+.|+.|..++.
T Consensus 80 -----hy~q~aDafVLVYs~~d~---eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~ 134 (198)
T KOG3883|consen 80 -----HYFQFADAFVLVYSPMDP---ESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPR 134 (198)
T ss_pred -----hHhccCceEEEEecCCCH---HHHHHHHHHHHHHhhccccccccEEEEechhhcccch
Confidence 244567999999988743 3333444444433 223446999999999987664
No 313
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=2.5e-09 Score=76.63 Aligned_cols=167 Identities=13% Similarity=0.072 Sum_probs=90.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEe----eCC------ceEEEEeCCCCCCCCCCcHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTML----KDG------QVVNVIDTPGLFDSSADSEFV 89 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~------~~~~liDtPG~~~~~~~~~~~ 89 (225)
++.+.+|.+|+||||++...+........-...+ .+.....+.+ |++ .++.||||.|...
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVG--IDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQER-------- 79 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVG--IDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQER-------- 79 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEee--cccccceEEEeccCCCCCCcceEEEEeeeccccHHH--------
Confidence 4677889999999999988775543111000001 1111111111 111 1789999999543
Q ss_pred HHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCch
Q 036158 90 SKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKP 168 (225)
Q Consensus 90 ~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~ 168 (225)
++...-...+.+=++++++|.+...+-.. +.++..++... -...+-+++..||+|+.... .+. ...
T Consensus 80 ---FRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hA-YcE~PDivlcGNK~DL~~~R--~Vs-------~~q 146 (219)
T KOG0081|consen 80 ---FRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHA-YCENPDIVLCGNKADLEDQR--VVS-------EDQ 146 (219)
T ss_pred ---HHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhh-ccCCCCEEEEcCccchhhhh--hhh-------HHH
Confidence 33333334456678999999974322222 23333333221 11235678889999975442 111 122
Q ss_pred HHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 169 LKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
..++..+.+.+|+--+.. ++..-...++-|++.+++-++.+
T Consensus 147 a~~La~kyglPYfETSA~--tg~Nv~kave~LldlvM~Rie~~ 187 (219)
T KOG0081|consen 147 AAALADKYGLPYFETSAC--TGTNVEKAVELLLDLVMKRIEQC 187 (219)
T ss_pred HHHHHHHhCCCeeeeccc--cCcCHHHHHHHHHHHHHHHHHHH
Confidence 567888888877643333 23223356666666666555443
No 314
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.00 E-value=1.6e-09 Score=75.32 Aligned_cols=163 Identities=11% Similarity=0.050 Sum_probs=100.5
Q ss_pred EEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCC
Q 036158 24 LVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKD 102 (225)
Q Consensus 24 v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~ 102 (225)
++|.+++|||-|+-.+...... .+.--.....+..-..+... ...++.+|||.|.. .++.-...+++
T Consensus 2 llgds~~gktcllir~kdgafl-~~~fistvgid~rnkli~~~~~kvklqiwdtagqe-----------rfrsvt~ayyr 69 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFL-AGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQE-----------RFRSVTHAYYR 69 (192)
T ss_pred ccccCccCceEEEEEeccCcee-cCceeeeeeeccccceeccCCcEEEEEEeeccchH-----------HHhhhhHhhhc
Confidence 6899999999988544322211 11000011111111222221 22378999999954 45555667888
Q ss_pred CccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEE
Q 036158 103 GIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCV 181 (225)
Q Consensus 103 ~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (225)
.+|+++++.|+..+.+-+. +.++..+.++-.+. ..++++.||+|..... .+. ...-..+.+..+.+++
T Consensus 70 da~allllydiankasfdn~~~wlsei~ey~k~~--v~l~llgnk~d~a~er------~v~---~ddg~kla~~y~ipfm 138 (192)
T KOG0083|consen 70 DADALLLLYDIANKASFDNCQAWLSEIHEYAKEA--VALMLLGNKCDLAHER------AVK---RDDGEKLAEAYGIPFM 138 (192)
T ss_pred ccceeeeeeecccchhHHHHHHHHHHHHHHHHhh--HhHhhhccccccchhh------ccc---cchHHHHHHHHCCCce
Confidence 9999999999975555444 44666777765443 6788999999975432 111 1223556667776543
Q ss_pred EeeCCCccccccHHHHHHHHHHHHHHHHHcCCCC
Q 036158 182 LFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQP 215 (225)
Q Consensus 182 ~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~ 215 (225)
.+|++++.+++-.+-.|.+-+.+.+-.+
T Consensus 139 ------etsaktg~nvd~af~~ia~~l~k~~~~~ 166 (192)
T KOG0083|consen 139 ------ETSAKTGFNVDLAFLAIAEELKKLKMGA 166 (192)
T ss_pred ------eccccccccHhHHHHHHHHHHHHhccCC
Confidence 5677888999988888877776665444
No 315
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.99 E-value=8.4e-09 Score=80.59 Aligned_cols=134 Identities=16% Similarity=0.176 Sum_probs=70.5
Q ss_pred ceEEEEeCCCCCCCC--CCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEE
Q 036158 69 QVVNVIDTPGLFDSS--ADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVF 144 (225)
Q Consensus 69 ~~~~liDtPG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~ 144 (225)
..++||||||..+.. .....+ |...+ +..-+-+++||+|....-.... ..++-...-++.. +.|+++|+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsI---Ite~l--ass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilykt--klp~ivvf 188 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSI---ITETL--ASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKT--KLPFIVVF 188 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccc---hHhhH--hhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhc--cCCeEEEE
Confidence 458999999987642 111111 11222 2235688999998752222211 1222222222222 37999999
Q ss_pred ecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEE------------EeeC---CCccccccHHHHHHHHHHHHHHHH
Q 036158 145 TGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCV------------LFDN---KTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 145 ~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~---~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
||+|..... ...++... -+.+++.+......|+ -|.+ ..-.|+.++.+.++++..+.+.+.
T Consensus 189 NK~Dv~d~~--fa~eWm~D--fE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vd 264 (366)
T KOG1532|consen 189 NKTDVSDSE--FALEWMTD--FEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVD 264 (366)
T ss_pred ecccccccH--HHHHHHHH--HHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHH
Confidence 999987664 33333332 1112222221111000 0111 112456678999999999999998
Q ss_pred HcCC
Q 036158 210 QNGG 213 (225)
Q Consensus 210 ~~~~ 213 (225)
+...
T Consensus 265 Ey~~ 268 (366)
T KOG1532|consen 265 EYEE 268 (366)
T ss_pred HHHH
Confidence 7643
No 316
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=5.1e-10 Score=78.85 Aligned_cols=164 Identities=15% Similarity=0.106 Sum_probs=105.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
+...+|.++|--|+||+|.+-.+--.++... -+|.......+.+ .+.++.+||.-|.. .++-+
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevvtt-----kPtigfnve~v~y-KNLk~~vwdLggqt-----------SirPy 78 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVVTT-----KPTIGFNVETVPY-KNLKFQVWDLGGQT-----------SIRPY 78 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCccccc-----CCCCCcCcccccc-ccccceeeEccCcc-----------cccHH
Confidence 3678999999999999998866653333211 1233333444555 67789999999854 45666
Q ss_pred HhhcCCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRN--RFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
|..++...+++|||+|..+ +++..-.++...+++--= .+.-++++.||.|-.... ...+.... ..+.+
T Consensus 79 WRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eL--q~a~llv~anKqD~~~~~--t~~E~~~~---L~l~~--- 148 (182)
T KOG0072|consen 79 WRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEEL--QHAKLLVFANKQDYSGAL--TRSEVLKM---LGLQK--- 148 (182)
T ss_pred HHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhh--cCceEEEEeccccchhhh--hHHHHHHH---hChHH---
Confidence 7778889999999998853 455555556666654211 125678889999965543 33333222 00122
Q ss_pred HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
...+.. .....||.++.++++.++++.+.++++
T Consensus 149 -Lk~r~~---~Iv~tSA~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 149 -LKDRIW---QIVKTSAVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred -Hhhhee---EEEeeccccccCCcHHHHHHHHHHhcc
Confidence 222222 233556778899999999999888764
No 317
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.97 E-value=2.8e-08 Score=84.39 Aligned_cols=133 Identities=18% Similarity=0.226 Sum_probs=89.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCC---------------------------------------------
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGS--------------------------------------------- 51 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~--------------------------------------------- 51 (225)
..-++|+|+|.-.+||||.+.++.....|+.+++.
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~ 385 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL 385 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence 44689999999999999999999877766554331
Q ss_pred -------CCceeEEEEEEEEe--eCCceEEEEeCCCCCCCCC--CcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHH
Q 036158 52 -------SGVTKTCEMQRTML--KDGQVVNVIDTPGLFDSSA--DSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEE 120 (225)
Q Consensus 52 -------~~~t~~~~~~~~~~--~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~ 120 (225)
.+.|.........+ |+-..++|+|.||...... ...++...|.++.+.+..++++||+|+.-. ..+.+
T Consensus 386 RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG-SVDAE 464 (980)
T KOG0447|consen 386 RMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG-SVDAE 464 (980)
T ss_pred HHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC-Ccchh
Confidence 13344344443333 3334899999999986442 234455667777777889999999999754 34433
Q ss_pred HHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158 121 EGAAIHILESLFGKKISDYMIVVFTGGDELED 152 (225)
Q Consensus 121 ~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~ 152 (225)
-...-+.+.+. ....+.+++|+||.|+.+.
T Consensus 465 RSnVTDLVsq~--DP~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 465 RSIVTDLVSQM--DPHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred hhhHHHHHHhc--CCCCCeeEEEEeecchhhh
Confidence 33333444443 2245789999999998765
No 318
>PTZ00099 rab6; Provisional
Probab=98.96 E-value=4.5e-08 Score=73.60 Aligned_cols=116 Identities=18% Similarity=0.077 Sum_probs=70.7
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecC
Q 036158 69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGG 147 (225)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~ 147 (225)
..+.||||||...+ ...+..++..+|++|+|+|.+++.+-.. ..++..+....+ ...|+++|.||+
T Consensus 29 v~l~iwDt~G~e~~-----------~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~--~~~piilVgNK~ 95 (176)
T PTZ00099 29 VRLQLWDTAGQERF-----------RSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG--KDVIIALVGNKT 95 (176)
T ss_pred EEEEEEECCChHHh-----------hhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECc
Confidence 47899999996532 2333445678999999999975432222 123333333221 236889999999
Q ss_pred CCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 148 DELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 148 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
|+........++ ........+..+ ...||.++.+++++++.|.+.+.+..
T Consensus 96 DL~~~~~v~~~e---------~~~~~~~~~~~~------~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 96 DLGDLRKVTYEE---------GMQKAQEYNTMF------HETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred ccccccCCCHHH---------HHHHHHHcCCEE------EEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 975432111111 223333333322 24566778999999999998887754
No 319
>PRK12288 GTPase RsgA; Reviewed
Probab=98.96 E-value=2.6e-09 Score=88.33 Aligned_cols=59 Identities=25% Similarity=0.374 Sum_probs=41.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccccccCCCC------CceeEEEEEEEEeeCCceEEEEeCCCCCCCC
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSS------GVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS 83 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~ 83 (225)
.++|+|.+|+|||||||+|++.....++.... -+|+..+.+.+. .+ ..|+||||+.++.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~--~~--~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFP--HG--GDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEec--CC--CEEEECCCCCccc
Confidence 58999999999999999999887554433221 245555555442 23 3599999998764
No 320
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=8.2e-09 Score=74.54 Aligned_cols=119 Identities=12% Similarity=0.040 Sum_probs=77.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
++.-+++++|--|+|||||++.|-..+...- .+|.++......+ .+..++.+|..|+. +-++.
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qh-----vPTlHPTSE~l~I-g~m~ftt~DLGGH~-----------qArr~ 80 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQH-----VPTLHPTSEELSI-GGMTFTTFDLGGHL-----------QARRV 80 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHcccccccc-----CCCcCCChHHhee-cCceEEEEccccHH-----------HHHHH
Confidence 4456799999999999999999987664322 2233333334455 77889999999964 23445
Q ss_pred HhhcCCCccEEEEEEeCCCC-CCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158 97 IGMTKDGIHAVLVVFSVRNR-FSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN 153 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~ 153 (225)
+..+...+|++++.+|+-+. .-.+.+..++.+...- .-...|+++..||+|.....
T Consensus 81 wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e-~la~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 81 WKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDE-SLATVPFLILGNKIDIPYAA 137 (193)
T ss_pred HHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHH-HHhcCcceeecccccCCCcc
Confidence 55677788999999988421 2222233333332210 01237999999999976653
No 321
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.95 E-value=3e-09 Score=79.67 Aligned_cols=58 Identities=29% Similarity=0.425 Sum_probs=43.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (225)
...++++++|.+|+|||||+|+|++...... ...+++|...+.... . ..+.++||||+
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~---~-~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKI---S-PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEe---c-CCEEEEECCCC
Confidence 3457899999999999999999998775433 334566666655443 2 56899999997
No 322
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.94 E-value=8.9e-09 Score=97.56 Aligned_cols=126 Identities=17% Similarity=0.242 Sum_probs=81.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCcccccc------CCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCC----CcHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSK------AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA----DSEFV 89 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~----~~~~~ 89 (225)
+=.+|+|++|+||||+|+.- |....-.. ....+.|..|... -....+++||+|.+-... .+...
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~ww-----f~~~avliDtaG~y~~~~~~~~~~~~~ 185 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWW-----FTDEAVLIDTAGRYTTQDSDPEEDAAA 185 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceE-----ecCCEEEEcCCCccccCCCcccccHHH
Confidence 55789999999999999665 33321110 1123445555543 234578999999764332 23345
Q ss_pred HHHHHHHHhhc--CCCccEEEEEEeCCCCCC--HH--------HHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158 90 SKEIVKCIGMT--KDGIHAVLVVFSVRNRFS--EE--------EGAAIHILESLFGKKISDYMIVVFTGGDELEDN 153 (225)
Q Consensus 90 ~~~~~~~~~~~--~~~~~~ii~v~~~~~~~~--~~--------~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~ 153 (225)
+..+...++.. ...+++||+++++.+-+. .. -+..+..+.+.++-+ .|++|++||+|.+.+.
T Consensus 186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~--~PVYvv~Tk~Dll~GF 259 (1169)
T TIGR03348 186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGAR--FPVYLVLTKADLLAGF 259 (1169)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCC--CCEEEEEecchhhcCH
Confidence 66777766554 457899999999873332 22 134445555555554 8999999999998764
No 323
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=3.7e-09 Score=86.31 Aligned_cols=89 Identities=20% Similarity=0.213 Sum_probs=69.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC-----------------ceEEEEeCCCCCCC
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG-----------------QVVNVIDTPGLFDS 82 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~liDtPG~~~~ 82 (225)
++++++|.||+|||||+|+++...+ ....+|.+|.++....+.++.- ..+.++|.+|+...
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a--~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGA--EIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCc--cccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 6899999999999999999998773 3345777888877766554221 15899999999988
Q ss_pred CCCcHHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 036158 83 SADSEFVSKEIVKCIGMTKDGIHAVLVVFSVR 114 (225)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~ 114 (225)
+...+.+..++...++. +|+++.|++..
T Consensus 81 As~GeGLGNkFL~~IRe----vdaI~hVVr~f 108 (372)
T COG0012 81 ASKGEGLGNKFLDNIRE----VDAIIHVVRCF 108 (372)
T ss_pred cccCCCcchHHHHhhhh----cCeEEEEEEec
Confidence 87778888888766544 49999999764
No 324
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=1.1e-07 Score=66.84 Aligned_cols=121 Identities=14% Similarity=0.139 Sum_probs=74.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
-.++..++|..|+|||-|+..++....-..-+...+.........+.- ...++.+|||.|. +.++...
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsg-qkiklqiwdtagq-----------erfravt 77 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSG-QKIKLQIWDTAGQ-----------ERFRAVT 77 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecC-cEEEEEEeecccH-----------HHHHHHH
Confidence 357889999999999999999886654222222233323333333332 3448999999994 4566666
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc-ccccccEEEEEecCCCCCC
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFG-KKISDYMIVVFTGGDELED 152 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~vv~~k~D~~~~ 152 (225)
.++++++.+.++|.|+..+-+-.. +-.|+..... .....-++++.||+|+-..
T Consensus 78 rsyyrgaagalmvyditrrstynh--lsswl~dar~ltnpnt~i~lignkadle~q 131 (215)
T KOG0097|consen 78 RSYYRGAAGALMVYDITRRSTYNH--LSSWLTDARNLTNPNTVIFLIGNKADLESQ 131 (215)
T ss_pred HHHhccccceeEEEEehhhhhhhh--HHHHHhhhhccCCCceEEEEecchhhhhhc
Confidence 788899999999999984433222 2233332210 0112346677899996543
No 325
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.93 E-value=2.2e-09 Score=88.09 Aligned_cols=63 Identities=27% Similarity=0.421 Sum_probs=49.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA 84 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (225)
....+++|+|-+|+||||+||+|.+.....++ ..++.|...+.... +..+.|+||||+.-...
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s-~~PG~Tk~~q~i~~----~~~i~LlDtPGii~~~~ 192 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTS-NRPGTTKGIQWIKL----DDGIYLLDTPGIIPPKF 192 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeC-CCCceecceEEEEc----CCCeEEecCCCcCCCCc
Confidence 34588999999999999999999999986554 35677777665554 44489999999985543
No 326
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.89 E-value=5.8e-09 Score=87.03 Aligned_cols=121 Identities=19% Similarity=0.224 Sum_probs=65.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCcc----ccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRA----FKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~----~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
.+++++|.+|+|||||+|+|++... ....+..+++|....... + +..+.|+||||+.....-...+..+-..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~--~--~~~~~l~DtPG~~~~~~~~~~l~~~~l~ 230 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIP--L--DDGHSLYDTPGIINSHQMAHYLDKKDLK 230 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEE--e--CCCCEEEECCCCCChhHhhhhcCHHHHh
Confidence 5899999999999999999998542 113344567776655433 3 3446899999998542111111111111
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDEL 150 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~ 150 (225)
.+. .........+.++....+.......++.+.. . ...+.+..++.+..
T Consensus 231 ~~~-~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~---~--~~~~~~~~~~~~~~ 279 (360)
T TIGR03597 231 YIT-PKKEIKPKTYQLNPNQTLFLGGLARFDYLKG---E--KTSFTFYVSNELNI 279 (360)
T ss_pred hcC-CCCccCceEEEeCCCCEEEEceEEEEEEecC---C--ceEEEEEccCCcee
Confidence 111 1234567777776653333323223332221 1 13455556655544
No 327
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.89 E-value=8.5e-09 Score=85.20 Aligned_cols=89 Identities=16% Similarity=0.102 Sum_probs=66.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc----------------eEEEEeCCCCCCCC
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ----------------VVNVIDTPGLFDSS 83 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~----------------~~~liDtPG~~~~~ 83 (225)
++++++|.+|+|||||+|+|++...... ..++.+|..+....+.+++.+ .+.++|.||+....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~-a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEA-ANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCcccc-CCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 6899999999999999999998875233 335777777777777764432 58999999998765
Q ss_pred CCcHHHHHHHHHHHhhcCCCccEEEEEEeC
Q 036158 84 ADSEFVSKEIVKCIGMTKDGIHAVLVVFSV 113 (225)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~ 113 (225)
.........+...+..+ |++++|++.
T Consensus 82 s~g~Glgn~fL~~ir~~----d~l~hVvr~ 107 (368)
T TIGR00092 82 SKGEGLGNQFLANIREV----DIIQHVVRC 107 (368)
T ss_pred hcccCcchHHHHHHHhC----CEEEEEEeC
Confidence 54444555666555444 999999987
No 328
>PRK12289 GTPase RsgA; Reviewed
Probab=98.88 E-value=3.1e-09 Score=87.89 Aligned_cols=60 Identities=27% Similarity=0.356 Sum_probs=41.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccccccCCC------CCceeEEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGS------SGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA 84 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (225)
.++|+|++|+|||||||+|++.....+.... .-+|+..... .++++ ..|+||||+.....
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~--~l~~g--~~liDTPG~~~~~l 239 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELF--ELPNG--GLLADTPGFNQPDL 239 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEE--ECCCC--cEEEeCCCcccccc
Confidence 4899999999999999999987654332211 1245555444 33233 27999999987654
No 329
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.88 E-value=7.1e-09 Score=83.21 Aligned_cols=90 Identities=21% Similarity=0.230 Sum_probs=72.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc----------------eEEEEeCCCCCC
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ----------------VVNVIDTPGLFD 81 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~----------------~~~liDtPG~~~ 81 (225)
.+++++++|.+|+|||||+|+|+..... ....+.+|.++....+..+..+ .+.++|..|+..
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~--~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAG--AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCC--ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 5689999999999999999999988764 3457788888888777663332 699999999998
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCccEEEEEEeC
Q 036158 82 SSADSEFVSKEIVKCIGMTKDGIHAVLVVFSV 113 (225)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~ 113 (225)
.+...+.+...+.+.++.. |+++-|+++
T Consensus 97 GAs~G~GLGN~FLs~iR~v----DaifhVVr~ 124 (391)
T KOG1491|consen 97 GASAGEGLGNKFLSHIRHV----DAIFHVVRA 124 (391)
T ss_pred CcccCcCchHHHHHhhhhc----cceeEEEEe
Confidence 8777778888877766554 888888765
No 330
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.86 E-value=1.6e-08 Score=77.09 Aligned_cols=128 Identities=19% Similarity=0.262 Sum_probs=83.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
..+|+++|.+|+||||+=..++..... ......+.|.+.....+.+-++.-+.+||+.|...+ +...+...-.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a-~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~f------men~~~~q~d 76 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIA-RDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEF------MENYLSSQED 76 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhh-hhhhccCCcceeeehhhhhhhhheeehhccCCcHHH------HHHHHhhcch
Confidence 468999999999999998766643321 112355667777776666645568899999995421 1222222223
Q ss_pred hcCCCccEEEEEEeCCCCCCHHHHHHHH-HHHHHhcccccccEEEEEecCCCCCCC
Q 036158 99 MTKDGIHAVLVVFSVRNRFSEEEGAAIH-ILESLFGKKISDYMIVVFTGGDELEDN 153 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~vv~~k~D~~~~~ 153 (225)
.....++++++|+|+..+--..|..... -|+.++.......+.+.++|+|+..-.
T Consensus 77 ~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d 132 (295)
T KOG3886|consen 77 NIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQED 132 (295)
T ss_pred hhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccc
Confidence 3456889999999997553334433333 334444444557899999999988664
No 331
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.86 E-value=9.8e-09 Score=81.99 Aligned_cols=60 Identities=28% Similarity=0.317 Sum_probs=40.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCcccccc------CCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCC
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSK------AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS 83 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~ 83 (225)
...+++|++|+|||||+|+|.+.....+. ....-+|+....+.+. ..-.|+||||+.++.
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~----~gG~iiDTPGf~~~~ 230 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLP----GGGWIIDTPGFRSLG 230 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcC----CCCEEEeCCCCCccC
Confidence 47889999999999999999975432221 1223355655555442 123589999998764
No 332
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.86 E-value=4.1e-08 Score=80.07 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=21.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
.....|+|+|++|+|||||++.+..
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4568899999999999999998764
No 333
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.85 E-value=6e-09 Score=82.42 Aligned_cols=59 Identities=25% Similarity=0.291 Sum_probs=41.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCC------CCCceeEEEEEEEEeeCCceEEEEeCCCCCCCC
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAG------SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS 83 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~ 83 (225)
..++++|.+|+|||||||+|++.....+... ...+|+....+.. .+ ..|+||||+....
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l---~~--~~liDtPG~~~~~ 185 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF---HG--GLIADTPGFNEFG 185 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc---CC--cEEEeCCCccccC
Confidence 4789999999999999999998754332211 2235666665554 22 3799999998654
No 334
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.84 E-value=1.5e-08 Score=77.30 Aligned_cols=95 Identities=17% Similarity=0.083 Sum_probs=58.1
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 036158 69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGD 148 (225)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D 148 (225)
..++||||||.... +.....++.+.+... .++-+++|+++... .++...+....+.+ ..--+++||.|
T Consensus 84 ~D~vlIDT~Gr~~~---d~~~~~el~~~~~~~--~~~~~~LVlsa~~~--~~~~~~~~~~~~~~-----~~~~lIlTKlD 151 (196)
T PF00448_consen 84 YDLVLIDTAGRSPR---DEELLEELKKLLEAL--NPDEVHLVLSATMG--QEDLEQALAFYEAF-----GIDGLILTKLD 151 (196)
T ss_dssp SSEEEEEE-SSSST---HHHHHHHHHHHHHHH--SSSEEEEEEEGGGG--GHHHHHHHHHHHHS-----STCEEEEESTT
T ss_pred CCEEEEecCCcchh---hHHHHHHHHHHhhhc--CCccceEEEecccC--hHHHHHHHHHhhcc-----cCceEEEEeec
Confidence 46999999997632 444555565555444 67889999998633 33333343333332 35578899999
Q ss_pred CCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCc
Q 036158 149 ELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTK 188 (225)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (225)
..... - .+-++....+.+..++.+-..
T Consensus 152 et~~~----G---------~~l~~~~~~~~Pi~~it~Gq~ 178 (196)
T PF00448_consen 152 ETARL----G---------ALLSLAYESGLPISYITTGQR 178 (196)
T ss_dssp SSSTT----H---------HHHHHHHHHTSEEEEEESSSS
T ss_pred CCCCc----c---------cceeHHHHhCCCeEEEECCCC
Confidence 76542 1 134556667888777776443
No 335
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.84 E-value=3.4e-07 Score=77.38 Aligned_cols=123 Identities=15% Similarity=0.179 Sum_probs=71.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHh------CCccccccCCCCC---------ce--eEEEEEEEEe--------------
Q 036158 17 NGERNLVLVGRTGNGKSATANSIL------GKRAFKSKAGSSG---------VT--KTCEMQRTML-------------- 65 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~------~~~~~~~~~~~~~---------~t--~~~~~~~~~~-------------- 65 (225)
.+...|+++|.+|+||||++..|. |.++.-....... .. .....+....
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 345789999999999999998875 3332211111100 00 0011111100
Q ss_pred --eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEE
Q 036158 66 --KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVV 143 (225)
Q Consensus 66 --~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv 143 (225)
..+..++|+||||... .......++...... ..++.++||+|+..+ .......+.+.+. ..+.-+|
T Consensus 178 ~~~~~~DvViIDTaGr~~---~d~~lm~El~~i~~~--~~p~e~lLVlda~~G--q~a~~~a~~F~~~-----~~~~g~I 245 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRHK---QEDSLFEEMLQVAEA--IQPDNIIFVMDGSIG--QAAEAQAKAFKDS-----VDVGSVI 245 (429)
T ss_pred HHhCCCCEEEEECCCCCc---chHHHHHHHHHHhhh--cCCcEEEEEeccccC--hhHHHHHHHHHhc-----cCCcEEE
Confidence 0245799999999653 334555666655433 267899999998633 2233344444432 2577899
Q ss_pred EecCCCCC
Q 036158 144 FTGGDELE 151 (225)
Q Consensus 144 ~~k~D~~~ 151 (225)
+||.|...
T Consensus 246 lTKlD~~a 253 (429)
T TIGR01425 246 ITKLDGHA 253 (429)
T ss_pred EECccCCC
Confidence 99999653
No 336
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.83 E-value=4.1e-09 Score=82.88 Aligned_cols=130 Identities=17% Similarity=0.148 Sum_probs=54.6
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHH-HHHHh-cccccccEEEEEecC
Q 036158 70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHI-LESLF-GKKISDYMIVVFTGG 147 (225)
Q Consensus 70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~-l~~~~-~~~~~~~~~vv~~k~ 147 (225)
.+.|+||||..+...- ......+.+.+.. ...-++++++|+. ..+... ..+.. +.... .-+...|.+.|+||+
T Consensus 92 ~y~l~DtPGQiElf~~-~~~~~~i~~~L~~--~~~~~~v~LvD~~-~~~~~~-~f~s~~L~s~s~~~~~~lP~vnvlsK~ 166 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTH-SDSGRKIVERLQK--NGRLVVVFLVDSS-FCSDPS-KFVSSLLLSLSIMLRLELPHVNVLSKI 166 (238)
T ss_dssp SEEEEE--SSHHHHHH-SHHHHHHHHTSSS------EEEEEE-GG-G-SSHH-HHHHHHHHHHHHHHHHTSEEEEEE--G
T ss_pred cEEEEeCCCCEEEEEe-chhHHHHHHHHhh--hcceEEEEEEecc-cccChh-hHHHHHHHHHHHHhhCCCCEEEeeecc
Confidence 6999999997643110 1112222222222 3445788888886 333211 22221 11110 012348999999999
Q ss_pred CCCCCCcccHHHHhh-------------hcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158 148 DELEDNDETLEDYLG-------------RECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 148 D~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~ 208 (225)
|.........-++.. ....+.+.+++...+... ...+-+++.+.++++|+..|.+..
T Consensus 167 Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~----~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 167 DLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVI----RFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp GGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS-------EE-BTTTTTTHHHHHHHHHHHH
T ss_pred CcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCc----eEEEEECCChHHHHHHHHHHHHHh
Confidence 988632111111111 111122333333333321 122334456688999999887764
No 337
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=5.4e-08 Score=84.26 Aligned_cols=118 Identities=21% Similarity=0.237 Sum_probs=77.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCC---------------CCCceeEEEEEEEEee----CCceEEEEeCC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAG---------------SSGVTKTCEMQRTMLK----DGQVVNVIDTP 77 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~---------------~~~~t~~~~~~~~~~~----~~~~~~liDtP 77 (225)
.-..+|+++|+-.+|||+|+..|..+.-...... ..+.+.......+.+. ....++++|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 4467899999999999999999987653211000 1233333333333331 12368999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 036158 78 GLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDEL 150 (225)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~ 150 (225)
|+.++. .+... ....+|++++|+|+-+++.-...++++..-+ . ..|+.+|+||+|.+
T Consensus 206 GHVnF~-------DE~ta----~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq---~--~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 206 GHVNFS-------DETTA----SLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ---N--RLPIVVVINKVDRL 262 (971)
T ss_pred Ccccch-------HHHHH----HhhhcceEEEEEEcccCceeeHHHHHHHHHh---c--cCcEEEEEehhHHH
Confidence 999773 22222 2335599999999977777766666654333 2 28999999999965
No 338
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.81 E-value=5.9e-09 Score=87.69 Aligned_cols=62 Identities=27% Similarity=0.374 Sum_probs=50.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS 83 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~ 83 (225)
...++|++||-+|+||||+||+|.|.+...+ +..++.|.+.+.+.+ ...+.|.||||+.-..
T Consensus 312 ~~~vtVG~VGYPNVGKSSTINaLvG~KkVsV-S~TPGkTKHFQTi~l----s~~v~LCDCPGLVfPS 373 (562)
T KOG1424|consen 312 KDVVTVGFVGYPNVGKSSTINALVGRKKVSV-SSTPGKTKHFQTIFL----SPSVCLCDCPGLVFPS 373 (562)
T ss_pred CceeEEEeecCCCCchhHHHHHHhcCceeee-ecCCCCcceeEEEEc----CCCceecCCCCccccC
Confidence 3479999999999999999999999997655 457888888776554 4458899999997544
No 339
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.80 E-value=1e-08 Score=79.42 Aligned_cols=131 Identities=18% Similarity=0.197 Sum_probs=88.6
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHH
Q 036158 11 KPTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVS 90 (225)
Q Consensus 11 ~~~~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~ 90 (225)
.|.-.....-++.++|.+.+||||++..|.|... ..+.+..+|-.+-.....+ .+-++.+.|.||+.+.+.+.....
T Consensus 51 gfDV~ktg~a~vg~vgFPSvGksTl~~~l~g~~s--~vasyefttl~~vpG~~~y-~gaKiqlldlpgiiegakdgkgrg 127 (358)
T KOG1487|consen 51 GFDVAKTGDARVGFVGFPSVGKSTLLSKLTGTFS--EVAAYEFTTLTTVPGVIRY-KGAKIQLLDLPGIIEGAKDGKGRG 127 (358)
T ss_pred CccceeecceeeeEEecCccchhhhhhhhcCCCC--ccccccceeEEEecceEec-cccceeeecCcchhcccccCCCCc
Confidence 4454555567899999999999999999998763 2233444444444444445 888999999999998765444333
Q ss_pred HHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccc-cccEEEEEecCCCC
Q 036158 91 KEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKI-SDYMIVVFTGGDEL 150 (225)
Q Consensus 91 ~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~vv~~k~D~~ 150 (225)
+++. ...+-++.+++|+|...+++ .+++++.-.+-|+-+. +.|.-+.+.|.|.-
T Consensus 128 ~qvi----avartcnli~~vld~~kp~~--hk~~ie~eleg~girlnk~pp~i~~kkKdkg 182 (358)
T KOG1487|consen 128 KQVI----AVARTCNLIFIVLDVLKPLS--HKKIIEKELEGFGIRLNKQPPNIGTKKKDKG 182 (358)
T ss_pred cEEE----EEeecccEEEEEeeccCccc--HHHHHHHhhhcceeeccCCCCCccccccccC
Confidence 3332 23344589999999976665 5567777667777763 34666666666643
No 340
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.77 E-value=3.3e-08 Score=72.76 Aligned_cols=57 Identities=28% Similarity=0.447 Sum_probs=40.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCC
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (225)
...+++++|.+|+||||++|++.+....... ...+.|...+.. .. +..+.+|||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~-~~~~~t~~~~~~--~~--~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTS-PSPGYTKGEQLV--KI--TSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeeeeeEEE--Ec--CCCEEEEECcCC
Confidence 4578999999999999999999986643332 234445444322 22 346899999995
No 341
>PRK13796 GTPase YqeH; Provisional
Probab=98.75 E-value=1.8e-08 Score=84.18 Aligned_cols=59 Identities=27% Similarity=0.306 Sum_probs=41.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCc----cccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCC
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKR----AFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~----~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (225)
..++.++|.+|+|||||||+|++.. .....+..+++|+...... + +....|+||||+..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~--l--~~~~~l~DTPGi~~ 222 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIP--L--DDGSFLYDTPGIIH 222 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEE--c--CCCcEEEECCCccc
Confidence 3579999999999999999998643 1112234567777654433 3 22358999999963
No 342
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.75 E-value=5.2e-08 Score=78.93 Aligned_cols=59 Identities=31% Similarity=0.361 Sum_probs=40.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCC------CCCceeEEEEEEEEeeCCceEEEEeCCCCCCC
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAG------SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDS 82 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~ 82 (225)
..++++|++|+|||||+|+|++......+.. ...+|+...... ++. ...++||||+.++
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~--~~~--~~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFP--LPG--GGLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEE--cCC--CCEEEECCCCCcc
Confidence 6799999999999999999998765433221 122444444333 311 2379999999754
No 343
>PRK00098 GTPase RsgA; Reviewed
Probab=98.74 E-value=4.5e-08 Score=79.69 Aligned_cols=60 Identities=30% Similarity=0.334 Sum_probs=40.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCC------CCceeEEEEEEEEeeCCceEEEEeCCCCCCC
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGS------SGVTKTCEMQRTMLKDGQVVNVIDTPGLFDS 82 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~ 82 (225)
...++++|++|+|||||+|+|++......+... ..+|+...... ++. ...|+||||+...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~--~~~--~~~~~DtpG~~~~ 229 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYD--LPG--GGLLIDTPGFSSF 229 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEE--cCC--CcEEEECCCcCcc
Confidence 457899999999999999999987654332221 12444444433 322 2489999999854
No 344
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=1.3e-08 Score=83.78 Aligned_cols=120 Identities=18% Similarity=0.202 Sum_probs=87.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCcccccc----------------CCCCCceeEEEEEEEEeeCCceEEEEeCCCC
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSK----------------AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (225)
..+..+|+++.+..+||||....|+-......+ ....+.|.......+.| .|..+++|||||+
T Consensus 34 ~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdw-kg~rinlidtpgh 112 (753)
T KOG0464|consen 34 IAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDW-KGHRINLIDTPGH 112 (753)
T ss_pred hhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeeccc-ccceEeeecCCCc
Confidence 355679999999999999999888744322111 11356788888888999 8999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158 80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED 152 (225)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~ 152 (225)
.|+... +.+ +.+-.|+++.|+|+..+........++.-.+ .+.|..+.+||+|+...
T Consensus 113 vdf~le-------ver----clrvldgavav~dasagve~qtltvwrqadk-----~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 113 VDFRLE-------VER----CLRVLDGAVAVFDASAGVEAQTLTVWRQADK-----FKIPAHCFINKMDKLAA 169 (753)
T ss_pred ceEEEE-------HHH----HHHHhcCeEEEEeccCCcccceeeeehhccc-----cCCchhhhhhhhhhhhh
Confidence 988532 222 3334599999999987766555444433332 34788999999998765
No 345
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.70 E-value=6.5e-07 Score=73.55 Aligned_cols=85 Identities=11% Similarity=0.139 Sum_probs=55.8
Q ss_pred ceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCC--------CCHHHHHHH
Q 036158 54 VTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNR--------FSEEEGAAI 125 (225)
Q Consensus 54 ~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~--------~~~~~~~~~ 125 (225)
.|.......+.+ ++..+.++|++|... .++.|..+..+++++|||++..+- ....-.+.+
T Consensus 147 ~T~Gi~~~~f~~-~~~~~~~~DvgGq~~-----------~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl 214 (317)
T cd00066 147 KTTGIVETKFTI-KNLKFRMFDVGGQRS-----------ERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESL 214 (317)
T ss_pred ccCCeeEEEEEe-cceEEEEECCCCCcc-----------cchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHH
Confidence 344455555666 678899999999542 233444566789999999998621 112234455
Q ss_pred HHHHHHhccc--ccccEEEEEecCCCC
Q 036158 126 HILESLFGKK--ISDYMIVVFTGGDEL 150 (225)
Q Consensus 126 ~~l~~~~~~~--~~~~~~vv~~k~D~~ 150 (225)
..+..++... ...|+++++||.|..
T Consensus 215 ~~f~~i~~~~~~~~~pill~~NK~D~f 241 (317)
T cd00066 215 NLFDSICNSRWFANTSIILFLNKKDLF 241 (317)
T ss_pred HHHHHHHhCccccCCCEEEEccChHHH
Confidence 5555555443 247999999999965
No 346
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.70 E-value=1.8e-07 Score=77.55 Aligned_cols=144 Identities=21% Similarity=0.186 Sum_probs=82.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccc-cccCCCCCceeEEEEEE-----------------------------EEeeC
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAF-KSKAGSSGVTKTCEMQR-----------------------------TMLKD 67 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~-~~~~~~~~~t~~~~~~~-----------------------------~~~~~ 67 (225)
+...|++||+||+||||.+-.|...... .....-.-.|+++.+.. ..+ .
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l-~ 280 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL-R 280 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-h
Confidence 3688999999999999999777654431 11111112344443322 111 3
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 036158 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGG 147 (225)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~ 147 (225)
++.++|+||.|.... +.....++...+... ...-+.||++++.. ...+.+.+.+ |+. ...--+++||.
T Consensus 281 ~~d~ILVDTaGrs~~---D~~~i~el~~~~~~~--~~i~~~Lvlsat~K----~~dlkei~~~-f~~--~~i~~~I~TKl 348 (407)
T COG1419 281 DCDVILVDTAGRSQY---DKEKIEELKELIDVS--HSIEVYLVLSATTK----YEDLKEIIKQ-FSL--FPIDGLIFTKL 348 (407)
T ss_pred cCCEEEEeCCCCCcc---CHHHHHHHHHHHhcc--ccceEEEEEecCcc----hHHHHHHHHH-hcc--CCcceeEEEcc
Confidence 457999999997643 444555565555444 23446667777622 2223333333 222 25567899999
Q ss_pred CCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCC
Q 036158 148 DELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKT 187 (225)
Q Consensus 148 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (225)
|....- -+ +-.++...+.++.++.+..
T Consensus 349 DET~s~----G~---------~~s~~~e~~~PV~YvT~GQ 375 (407)
T COG1419 349 DETTSL----GN---------LFSLMYETRLPVSYVTNGQ 375 (407)
T ss_pred cccCch----hH---------HHHHHHHhCCCeEEEeCCC
Confidence 965432 11 4456666677777776643
No 347
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=1.4e-07 Score=82.86 Aligned_cols=118 Identities=25% Similarity=0.339 Sum_probs=80.2
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccC--------------CCCCceeEEEEEEEEeeCCceEEEEeCCCC
Q 036158 14 SPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKA--------------GSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79 (225)
Q Consensus 14 ~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (225)
..+....+|.++.+...|||||..+|+..+...+.. ...+.|-..-...... .+..++|||+||+
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~-~~~~~nlidspgh 82 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLH-KDYLINLIDSPGH 82 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccccccc-CceEEEEecCCCc
Confidence 344566899999999999999999998766532211 1233444443333333 6778999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHH--HHHHHhcccccccEEEEEecCCCC
Q 036158 80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIH--ILESLFGKKISDYMIVVFTGGDEL 150 (225)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~vv~~k~D~~ 150 (225)
.|+. .++..+. .-.|++++.+|+-.+....+...++ |+.. ..+++|+||+|.+
T Consensus 83 vdf~-------sevssas----~l~d~alvlvdvvegv~~qt~~vlrq~~~~~-------~~~~lvinkidrl 137 (887)
T KOG0467|consen 83 VDFS-------SEVSSAS----RLSDGALVLVDVVEGVCSQTYAVLRQAWIEG-------LKPILVINKIDRL 137 (887)
T ss_pred cchh-------hhhhhhh----hhcCCcEEEEeeccccchhHHHHHHHHHHcc-------CceEEEEehhhhH
Confidence 9874 2233333 3348989999987788777766665 3333 4668899999943
No 348
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.68 E-value=7.7e-08 Score=74.28 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=22.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
...++|+|+|+.|+|||||++.++..
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999998754
No 349
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.67 E-value=3.6e-07 Score=75.98 Aligned_cols=144 Identities=21% Similarity=0.183 Sum_probs=79.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCc------cccccCC-CC-C---------ceeEEEEEEEE-----------ee--C
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKR------AFKSKAG-SS-G---------VTKTCEMQRTM-----------LK--D 67 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~------~~~~~~~-~~-~---------~t~~~~~~~~~-----------~~--~ 67 (225)
....|+|+|++|+||||++..|...- +.....+ .. + ....+...... .. .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 34689999999999999998885321 1000000 00 0 00000000000 00 1
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 036158 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGG 147 (225)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~ 147 (225)
+..++||||||... .+.....++.+.+... .++.++||+++... ..+..+.++.+.. ...--+++||.
T Consensus 320 ~~DvVLIDTaGRs~---kd~~lm~EL~~~lk~~--~PdevlLVLsATtk-~~d~~~i~~~F~~------~~idglI~TKL 387 (436)
T PRK11889 320 RVDYILIDTAGKNY---RASETVEEMIETMGQV--EPDYICLTLSASMK-SKDMIEIITNFKD------IHIDGIVFTKF 387 (436)
T ss_pred CCCEEEEeCccccC---cCHHHHHHHHHHHhhc--CCCeEEEEECCccC-hHHHHHHHHHhcC------CCCCEEEEEcc
Confidence 34789999999753 3344555666655433 46788999887521 1122333333332 25567899999
Q ss_pred CCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158 148 DELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK 186 (225)
Q Consensus 148 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (225)
|..... -.+-++...++.+..++.+-
T Consensus 388 DET~k~-------------G~iLni~~~~~lPIsyit~G 413 (436)
T PRK11889 388 DETASS-------------GELLKIPAVSSAPIVLMTDG 413 (436)
T ss_pred cCCCCc-------------cHHHHHHHHHCcCEEEEeCC
Confidence 965432 11455666778777777653
No 350
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.66 E-value=7.7e-07 Score=76.67 Aligned_cols=175 Identities=15% Similarity=0.154 Sum_probs=91.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCc--------cccccCCC-C-C---------ceeEEEEEEE-----------Eee
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKR--------AFKSKAGS-S-G---------VTKTCEMQRT-----------MLK 66 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~--------~~~~~~~~-~-~---------~t~~~~~~~~-----------~~~ 66 (225)
.....|+|+|++|+||||++..|...- +.-..... . + .......... .+
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l- 426 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL- 426 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-
Confidence 456789999999999999998876421 10000000 0 0 0000001110 11
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 036158 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTG 146 (225)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k 146 (225)
.+..++||||||.... +.....++.. +.... ....++|++....... -.+.++.+... .+.-+|+||
T Consensus 427 ~~~DLVLIDTaG~s~~---D~~l~eeL~~-L~aa~--~~a~lLVLpAtss~~D-l~eii~~f~~~------~~~gvILTK 493 (559)
T PRK12727 427 RDYKLVLIDTAGMGQR---DRALAAQLNW-LRAAR--QVTSLLVLPANAHFSD-LDEVVRRFAHA------KPQGVVLTK 493 (559)
T ss_pred ccCCEEEecCCCcchh---hHHHHHHHHH-HHHhh--cCCcEEEEECCCChhH-HHHHHHHHHhh------CCeEEEEec
Confidence 2457999999998632 2222222221 21111 2346677777532221 12334433332 567899999
Q ss_pred CCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCcc-ccccHHHHHHHHHHHHHHHHHcCCCCCCHH
Q 036158 147 GDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKD-TAKRTEQVGKLLSLVNSVIVQNGGQPYTDE 219 (225)
Q Consensus 147 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~l~~~i~~~~~~~~~~~~~~~ 219 (225)
+|..... -. +-.++...+.++.++.+.... ..........|...+..+-.+... +++.+
T Consensus 494 lDEt~~l----G~---------aLsv~~~~~LPI~yvt~GQ~VPeDL~~A~~~~Lv~r~~~l~~~~~~-~~~~~ 553 (559)
T PRK12727 494 LDETGRF----GS---------ALSVVVDHQMPITWVTDGQRVPDDLHRANAASLVLRLEDLRRAADK-PCTPE 553 (559)
T ss_pred CcCccch----hH---------HHHHHHHhCCCEEEEeCCCCchhhhhcCCHHHHHHHHHHHHhhccC-CCChh
Confidence 9964321 11 344555667777776654332 112334556788888887776655 44433
No 351
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=1.3e-07 Score=81.25 Aligned_cols=123 Identities=16% Similarity=0.189 Sum_probs=91.9
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhCCcccccc----------------CCCCCceeEEEEEEEEeeCCceEEEEeCC
Q 036158 14 SPSNGERNLVLVGRTGNGKSATANSILGKRAFKSK----------------AGSSGVTKTCEMQRTMLKDGQVVNVIDTP 77 (225)
Q Consensus 14 ~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~liDtP 77 (225)
.+.++..+|++.-+-.+||||+-+.++........ ....+.|.......+.| ...++++||||
T Consensus 34 ~~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w-~~~~iNiIDTP 112 (721)
T KOG0465|consen 34 IPLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTW-RDYRINIIDTP 112 (721)
T ss_pred CchhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeee-ccceeEEecCC
Confidence 44567889999999999999999998865543221 11346777888888899 78899999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158 78 GLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN 153 (225)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~ 153 (225)
|+.|+...-+ .+..-.|+.++|+++-.+......-..+.+..+ ..|.++.+||+|.+..+
T Consensus 113 GHvDFT~EVe-----------RALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry-----~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 113 GHVDFTFEVE-----------RALRVLDGAVLVLDAVAGVESQTETVWRQMKRY-----NVPRICFINKMDRMGAS 172 (721)
T ss_pred CceeEEEEeh-----------hhhhhccCeEEEEEcccceehhhHHHHHHHHhc-----CCCeEEEEehhhhcCCC
Confidence 9998842222 233345888888887667776676777777765 37999999999999775
No 352
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.61 E-value=5.6e-07 Score=80.78 Aligned_cols=163 Identities=19% Similarity=0.168 Sum_probs=85.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCC-CceeEEEE------------------EE-----------EEeeCC
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSS-GVTKTCEM------------------QR-----------TMLKDG 68 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~-~~t~~~~~------------------~~-----------~~~~~~ 68 (225)
.-.|+|+|++|+||||++..|.+......+.... -.+.+... .. -.. .+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~-~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAAL-GD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHh-cC
Confidence 4578999999999999998887643211100000 00000000 00 011 33
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecC
Q 036158 69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGG 147 (225)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~ 147 (225)
..++||||||.... +..+.+++..... ...++-+++|+++... ..+ .+.++.+....+. ...-+|+||.
T Consensus 264 ~D~VLIDTAGRs~~---d~~l~eel~~l~~--~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~---~i~glIlTKL 333 (767)
T PRK14723 264 KHLVLIDTVGMSQR---DRNVSEQIAMLCG--VGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGE---DVDGCIITKL 333 (767)
T ss_pred CCEEEEeCCCCCcc---CHHHHHHHHHHhc--cCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccC---CCCEEEEecc
Confidence 47999999997632 3334444443322 2356778999998622 122 1233333321111 3457899999
Q ss_pred CCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCcc-ccccHHHHHHHHHHHH
Q 036158 148 DELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKD-TAKRTEQVGKLLSLVN 205 (225)
Q Consensus 148 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~l~~~i~ 205 (225)
|...... .+-.+....+.++.++.+-... .......-++|.+.+-
T Consensus 334 DEt~~~G-------------~iL~i~~~~~lPI~yit~GQ~VPdDL~~a~~~~lv~~ll 379 (767)
T PRK14723 334 DEATHLG-------------PALDTVIRHRLPVHYVSTGQKVPEHLELAQADELVDRAF 379 (767)
T ss_pred CCCCCcc-------------HHHHHHHHHCCCeEEEecCCCChhhcccCCHHHHHHHHh
Confidence 9764321 1445666667777777654332 1122234455555553
No 353
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=4.5e-07 Score=84.49 Aligned_cols=126 Identities=17% Similarity=0.230 Sum_probs=76.9
Q ss_pred eeEEEEcCCCCCHHHHH-HHHhCCcccc----ccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCC----cHHHH
Q 036158 20 RNLVLVGRTGNGKSATA-NSILGKRAFK----SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSAD----SEFVS 90 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSli-n~l~~~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~----~~~~~ 90 (225)
+=.+|+|++|+||||++ |+-+...... .....++ |..|+. -.+..-++|||.|-+-...+ +...+
T Consensus 126 PWy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g-T~~cdw-----wf~deaVlIDtaGry~~q~s~~~~~~~~W 199 (1188)
T COG3523 126 PWYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG-TRNCDW-----WFTDEAVLIDTAGRYITQDSADEVDRAEW 199 (1188)
T ss_pred CceEEecCCCCCcchHHhcccccCcchhhhccccccCCC-CcccCc-----ccccceEEEcCCcceecccCcchhhHHHH
Confidence 33578999999999999 4333222111 0111122 666652 24567899999997644332 22334
Q ss_pred HHHHHHHhh--cCCCccEEEEEEeCCCCCCHHH----------HHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158 91 KEIVKCIGM--TKDGIHAVLVVFSVRNRFSEEE----------GAAIHILESLFGKKISDYMIVVFTGGDELEDN 153 (225)
Q Consensus 91 ~~~~~~~~~--~~~~~~~ii~v~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~ 153 (225)
..+...++. ....+++||+.+++.+-.+... +..+..+.+.++.+ .|+++++||.|++++.
T Consensus 200 ~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~--~PVYl~lTk~Dll~GF 272 (1188)
T COG3523 200 LGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHAR--LPVYLVLTKADLLPGF 272 (1188)
T ss_pred HHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccC--CceEEEEecccccccH
Confidence 444444443 3457899999999863322222 22355566666654 8999999999998764
No 354
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.58 E-value=1.7e-06 Score=69.50 Aligned_cols=96 Identities=16% Similarity=0.133 Sum_probs=55.9
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh----cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEE
Q 036158 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM----TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIV 142 (225)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 142 (225)
.+..++|+||||.... +.....++...... ....+|.+++|+++.. ..........+.+.+ ...-+
T Consensus 153 ~~~D~ViIDT~G~~~~---d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~~~~f~~~~-----~~~g~ 222 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQN---KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQAKVFNEAV-----GLTGI 222 (272)
T ss_pred CCCCEEEEeCCCCCcc---hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHHHHHHHhhC-----CCCEE
Confidence 4467999999998643 33344444443322 1235799999999962 333333334433322 46688
Q ss_pred EEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeC
Q 036158 143 VFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDN 185 (225)
Q Consensus 143 v~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (225)
|+||.|....... .-++....+.+..++.+
T Consensus 223 IlTKlDe~~~~G~-------------~l~~~~~~~~Pi~~~~~ 252 (272)
T TIGR00064 223 ILTKLDGTAKGGI-------------ILSIAYELKLPIKFIGV 252 (272)
T ss_pred EEEccCCCCCccH-------------HHHHHHHHCcCEEEEeC
Confidence 9999997544311 23344455666666654
No 355
>PRK14974 cell division protein FtsY; Provisional
Probab=98.58 E-value=1.5e-06 Score=71.59 Aligned_cols=94 Identities=16% Similarity=0.116 Sum_probs=54.9
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 036158 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGG 147 (225)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~ 147 (225)
+..++|+||||.... +.....++....... .+|.++||+++... .+..+....+.+.. ..--+++||.
T Consensus 222 ~~DvVLIDTaGr~~~---~~~lm~eL~~i~~~~--~pd~~iLVl~a~~g--~d~~~~a~~f~~~~-----~~~giIlTKl 289 (336)
T PRK14974 222 GIDVVLIDTAGRMHT---DANLMDELKKIVRVT--KPDLVIFVGDALAG--NDAVEQAREFNEAV-----GIDGVILTKV 289 (336)
T ss_pred CCCEEEEECCCccCC---cHHHHHHHHHHHHhh--CCceEEEeeccccc--hhHHHHHHHHHhcC-----CCCEEEEeee
Confidence 346999999997632 344555555444322 57899999998632 22222333333221 4568899999
Q ss_pred CCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158 148 DELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK 186 (225)
Q Consensus 148 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (225)
|....... +-.+....+.++.++.+-
T Consensus 290 D~~~~~G~-------------~ls~~~~~~~Pi~~i~~G 315 (336)
T PRK14974 290 DADAKGGA-------------ALSIAYVIGKPILFLGVG 315 (336)
T ss_pred cCCCCccH-------------HHHHHHHHCcCEEEEeCC
Confidence 97543211 233444457777766543
No 356
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.58 E-value=2.7e-07 Score=73.28 Aligned_cols=109 Identities=16% Similarity=0.134 Sum_probs=58.7
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHH-HHHHHhcccccccEEEEEecC
Q 036158 69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIH-ILESLFGKKISDYMIVVFTGG 147 (225)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~vv~~k~ 147 (225)
..++|+.|-|.++.. ..+. .-+|.+++|.-.... ++.+.++ -+.++ -=++|+||.
T Consensus 144 ~DvIIVETVGvGQse-------v~I~-------~~aDt~~~v~~pg~G---D~~Q~iK~GimEi-------aDi~vINKa 199 (323)
T COG1703 144 YDVIIVETVGVGQSE-------VDIA-------NMADTFLVVMIPGAG---DDLQGIKAGIMEI-------ADIIVINKA 199 (323)
T ss_pred CCEEEEEecCCCcch-------hHHh-------hhcceEEEEecCCCC---cHHHHHHhhhhhh-------hheeeEecc
Confidence 458999999988652 1121 134888888744311 2333332 23332 238999999
Q ss_pred CCCCCCcccHHHHhhhcCCchHHHH---HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 148 DELEDNDETLEDYLGRECPKPLKEI---LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 148 D~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
|. ++......++... ++.. -..-+++.. ...+++..+.++++|.+.|.++.+..
T Consensus 200 D~-~~A~~a~r~l~~a-----l~~~~~~~~~~~W~pp----v~~t~A~~g~Gi~~L~~ai~~h~~~~ 256 (323)
T COG1703 200 DR-KGAEKAARELRSA-----LDLLREVWRENGWRPP----VVTTSALEGEGIDELWDAIEDHRKFL 256 (323)
T ss_pred Ch-hhHHHHHHHHHHH-----HHhhcccccccCCCCc----eeEeeeccCCCHHHHHHHHHHHHHHH
Confidence 93 3322222222211 2211 111122222 23456667789999999999877654
No 357
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.56 E-value=2.7e-06 Score=69.71 Aligned_cols=147 Identities=16% Similarity=0.151 Sum_probs=78.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCc------cccccCCC-C----------CceeEEEEEEEE---------------
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKR------AFKSKAGS-S----------GVTKTCEMQRTM--------------- 64 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~------~~~~~~~~-~----------~~t~~~~~~~~~--------------- 64 (225)
.+...|+++|++|+||||++..|.+.- +.-..... . ............
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 345789999999999999997775422 11000000 0 000001111100
Q ss_pred -eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh---h-cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc
Q 036158 65 -LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG---M-TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDY 139 (225)
Q Consensus 65 -~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 139 (225)
...+..++|+||||.... .....+++..... . ....++..++|+++..+ .........+.+. ...
T Consensus 192 ~~~~~~D~ViIDTaGr~~~---~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~a~~f~~~-----~~~ 261 (318)
T PRK10416 192 AKARGIDVLIIDTAGRLHN---KTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQAKAFHEA-----VGL 261 (318)
T ss_pred HHhCCCCEEEEeCCCCCcC---CHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHHHHHHHhh-----CCC
Confidence 013447999999997643 2333334443332 1 12357889999999733 2222222222222 146
Q ss_pred EEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158 140 MIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK 186 (225)
Q Consensus 140 ~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (225)
.-+|+||.|..... -.+-++....+.++.++..-
T Consensus 262 ~giIlTKlD~t~~~-------------G~~l~~~~~~~~Pi~~v~~G 295 (318)
T PRK10416 262 TGIILTKLDGTAKG-------------GVVFAIADELGIPIKFIGVG 295 (318)
T ss_pred CEEEEECCCCCCCc-------------cHHHHHHHHHCCCEEEEeCC
Confidence 68999999954332 11344555667777777653
No 358
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.56 E-value=8.7e-07 Score=74.87 Aligned_cols=144 Identities=15% Similarity=0.149 Sum_probs=77.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCC-ceeEEEE------------------E-----------EEEee
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSG-VTKTCEM------------------Q-----------RTMLK 66 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~-~t~~~~~------------------~-----------~~~~~ 66 (225)
...-+|+++|++|+||||++..|.+...........+ .+.+... . ...+
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l- 267 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHEL- 267 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHh-
Confidence 4457899999999999999998765321100000000 0000000 0 0112
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 036158 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTG 146 (225)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k 146 (225)
.+..++++||+|.... .....+++... .. ....+-.+||+++... ..+ + ..+...|.. ...--+|+||
T Consensus 268 ~~~d~VLIDTaGrsqr---d~~~~~~l~~l-~~-~~~~~~~~LVl~at~~--~~~--~-~~~~~~f~~--~~~~~~I~TK 335 (420)
T PRK14721 268 RGKHMVLIDTVGMSQR---DQMLAEQIAML-SQ-CGTQVKHLLLLNATSS--GDT--L-DEVISAYQG--HGIHGCIITK 335 (420)
T ss_pred cCCCEEEecCCCCCcc---hHHHHHHHHHH-hc-cCCCceEEEEEcCCCC--HHH--H-HHHHHHhcC--CCCCEEEEEe
Confidence 3446899999997632 23334444332 22 2245668888888622 222 2 222233332 2566789999
Q ss_pred CCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158 147 GDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK 186 (225)
Q Consensus 147 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (225)
.|...... .+-.++...+.++.++.+-
T Consensus 336 lDEt~~~G-------------~~l~~~~~~~lPi~yvt~G 362 (420)
T PRK14721 336 VDEAASLG-------------IALDAVIRRKLVLHYVTNG 362 (420)
T ss_pred eeCCCCcc-------------HHHHHHHHhCCCEEEEECC
Confidence 99754321 1344556667777777654
No 359
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.54 E-value=1.6e-06 Score=71.08 Aligned_cols=174 Identities=14% Similarity=0.153 Sum_probs=106.7
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhCCccccccC------------CCCCceeEEEEEEEEeeC---------------
Q 036158 15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKSKA------------GSSGVTKTCEMQRTMLKD--------------- 67 (225)
Q Consensus 15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~------------~~~~~t~~~~~~~~~~~~--------------- 67 (225)
...+++.+++.|+.+.|||||+-+|+-...-+-.. ...+.|.......+-+.+
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 34678999999999999999998886444321110 011222222222222211
Q ss_pred -------CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccE
Q 036158 68 -------GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYM 140 (225)
Q Consensus 68 -------~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 140 (225)
+.-+.|+||-|+.. ++...++.. .-+++|-.++|+-+++..+...++.+-.+... ..|+
T Consensus 193 ~~vv~~aDklVsfVDtvGHEp------wLrTtirGL---~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~-----~lPv 258 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEP------WLRTTIRGL---LGQKVDYGLLVVAADDGVTKMTKEHLGIALAM-----ELPV 258 (527)
T ss_pred hHhhhhcccEEEEEecCCccH------HHHHHHHHH---hccccceEEEEEEccCCcchhhhHhhhhhhhh-----cCCE
Confidence 23588999999762 222223322 23477999999999888888887777666553 3799
Q ss_pred EEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC-cEEEee------------------CCCccccccHHHHHHHH
Q 036158 141 IVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN-RCVLFD------------------NKTKDTAKRTEQVGKLL 201 (225)
Q Consensus 141 ~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------------------~~~~~~~~~~~~v~~l~ 201 (225)
++++||+|..+++ .+....++ +.++++..+. ++..-+ +...+|+.++.+++-|.
T Consensus 259 iVvvTK~D~~~dd--r~~~v~~e-----i~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~ 331 (527)
T COG5258 259 IVVVTKIDMVPDD--RFQGVVEE-----ISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLD 331 (527)
T ss_pred EEEEEecccCcHH--HHHHHHHH-----HHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHH
Confidence 9999999988775 66666665 5555544332 222111 12345667778887777
Q ss_pred HHHHHHHH
Q 036158 202 SLVNSVIV 209 (225)
Q Consensus 202 ~~i~~~~~ 209 (225)
+.+..+-+
T Consensus 332 e~f~~Lp~ 339 (527)
T COG5258 332 EFFLLLPK 339 (527)
T ss_pred HHHHhCCc
Confidence 77654433
No 360
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.54 E-value=3.9e-06 Score=69.60 Aligned_cols=85 Identities=12% Similarity=0.134 Sum_probs=56.5
Q ss_pred ceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCC--------CCHHHHHHH
Q 036158 54 VTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNR--------FSEEEGAAI 125 (225)
Q Consensus 54 ~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~--------~~~~~~~~~ 125 (225)
.|.......+.+ ++..+.++|..|.. ..++.|..+..+++++|||++..+- ....-.+.+
T Consensus 170 ~T~Gi~~~~f~~-~~~~~~~~DvgGqr-----------~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl 237 (342)
T smart00275 170 PTTGIQETAFIV-KKLFFRMFDVGGQR-----------SERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESL 237 (342)
T ss_pred CccceEEEEEEE-CCeEEEEEecCCch-----------hhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHH
Confidence 344555555666 77789999999953 2234444567789999999998731 112234455
Q ss_pred HHHHHHhccc--ccccEEEEEecCCCC
Q 036158 126 HILESLFGKK--ISDYMIVVFTGGDEL 150 (225)
Q Consensus 126 ~~l~~~~~~~--~~~~~~vv~~k~D~~ 150 (225)
..+..++... ...|+++++||.|..
T Consensus 238 ~~f~~l~~~~~~~~~piil~~NK~D~~ 264 (342)
T smart00275 238 NLFESICNSRWFANTSIILFLNKIDLF 264 (342)
T ss_pred HHHHHHHcCccccCCcEEEEEecHHhH
Confidence 5556655543 346999999999976
No 361
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.52 E-value=4e-07 Score=72.57 Aligned_cols=73 Identities=26% Similarity=0.300 Sum_probs=50.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCcc----ccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRA----FKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFV 89 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~----~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~ 89 (225)
.+.++++.|+|-+|+|||||||++-.... .......++.|+..... +.+.....+.++||||.....-.+.+.
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~rp~vy~iDTPGil~P~I~~~e~ 216 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISHRPPVYLIDTPGILVPSIVDVED 216 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEeccCCceEEecCCCcCCCCCCCHHH
Confidence 35679999999999999999999764432 22233456677666542 233367789999999998765555443
No 362
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.51 E-value=3.9e-07 Score=75.84 Aligned_cols=150 Identities=17% Similarity=0.180 Sum_probs=77.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCC-CCceeEEE------------------EEE-----------EEee
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGS-SGVTKTCE------------------MQR-----------TMLK 66 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~-~~~t~~~~------------------~~~-----------~~~~ 66 (225)
...-.++|+|++|+||||++..|........+... .-.|.+.. ... ..+
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l- 213 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL- 213 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh-
Confidence 34568999999999999999888653211100000 00011110 000 112
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc---ccccEEEE
Q 036158 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK---ISDYMIVV 143 (225)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~vv 143 (225)
.+..++||||||.... +....+.+. .+.. ...+.-.++|+++...... -.+.+..+....+.. .....-+|
T Consensus 214 ~~~DlVLIDTaG~~~~---d~~l~e~La-~L~~-~~~~~~~lLVLsAts~~~~-l~evi~~f~~~~~~p~~~~~~~~~~I 287 (374)
T PRK14722 214 RNKHMVLIDTIGMSQR---DRTVSDQIA-MLHG-ADTPVQRLLLLNATSHGDT-LNEVVQAYRSAAGQPKAALPDLAGCI 287 (374)
T ss_pred cCCCEEEEcCCCCCcc---cHHHHHHHH-HHhc-cCCCCeEEEEecCccChHH-HHHHHHHHHHhhcccccccCCCCEEE
Confidence 3457999999997633 233333332 2222 2344567888888633221 123444444432111 00245789
Q ss_pred EecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158 144 FTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK 186 (225)
Q Consensus 144 ~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (225)
+||.|....... +-.++...+.++.++.+-
T Consensus 288 ~TKlDEt~~~G~-------------~l~~~~~~~lPi~yvt~G 317 (374)
T PRK14722 288 LTKLDEASNLGG-------------VLDTVIRYKLPVHYVSTG 317 (374)
T ss_pred EeccccCCCccH-------------HHHHHHHHCcCeEEEecC
Confidence 999996543211 344555557776666553
No 363
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.51 E-value=1.3e-07 Score=73.92 Aligned_cols=104 Identities=20% Similarity=0.218 Sum_probs=54.6
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCC--CCCCHHHHHHHHHHHHHhcccccccEEEEEe
Q 036158 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVR--NRFSEEEGAAIHILESLFGKKISDYMIVVFT 145 (225)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~ 145 (225)
+..++|+.|.|.++.. -.+ ..-+|.+++|+... +.+...-.-+ .++ .=++|+|
T Consensus 121 G~D~IiiETVGvGQsE-------~~I-------~~~aD~~v~v~~Pg~GD~iQ~~KaGi----mEi-------aDi~vVN 175 (266)
T PF03308_consen 121 GFDVIIIETVGVGQSE-------VDI-------ADMADTVVLVLVPGLGDEIQAIKAGI----MEI-------ADIFVVN 175 (266)
T ss_dssp T-SEEEEEEESSSTHH-------HHH-------HTTSSEEEEEEESSTCCCCCTB-TTH----HHH--------SEEEEE
T ss_pred CCCEEEEeCCCCCccH-------HHH-------HHhcCeEEEEecCCCccHHHHHhhhh----hhh-------ccEEEEe
Confidence 4569999999988431 111 23459999998653 2222111112 222 2388999
Q ss_pred cCCCCCCCcccHHHHhhhcCCchHHHHHHHcC-----CcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 146 GGDELEDNDETLEDYLGRECPKPLKEILQLCD-----NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 146 k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
|+|.. ..+....+ ++..++... ++...+ .+++.++.++++|.+.|.++...
T Consensus 176 KaD~~-----gA~~~~~~-----l~~~l~l~~~~~~~W~ppV~----~tsA~~~~Gi~eL~~~i~~~~~~ 231 (266)
T PF03308_consen 176 KADRP-----GADRTVRD-----LRSMLHLLREREDGWRPPVL----KTSALEGEGIDELWEAIDEHRDY 231 (266)
T ss_dssp --SHH-----HHHHHHHH-----HHHHHHHCSTSCTSB--EEE----EEBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCChH-----HHHHHHHH-----HHHHHhhccccccCCCCCEE----EEEeCCCCCHHHHHHHHHHHHHH
Confidence 99932 22233333 344443322 222223 33455678999999999876644
No 364
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.50 E-value=9.9e-07 Score=65.12 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q 036158 21 NLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~ 42 (225)
.++++|..|+|||||++.++..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 5789999999999999988765
No 365
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.49 E-value=2e-06 Score=73.92 Aligned_cols=162 Identities=15% Similarity=0.153 Sum_probs=81.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCC-ceeEEE------------------EE-----------EEEeeCC
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSG-VTKTCE------------------MQ-----------RTMLKDG 68 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~-~t~~~~------------------~~-----------~~~~~~~ 68 (225)
...|+|+|++|+||||++..|.+......+..... .+.+.. .. ...+ .+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L-~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSEL-RN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhc-cC
Confidence 46799999999999999988875332111000000 000000 00 0122 23
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 036158 69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGD 148 (225)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D 148 (225)
..+++|||+|.... ..... +....+..... ++-.+||+++... . ..+.+.++. |.. ....-+|+||.|
T Consensus 335 ~d~VLIDTaGr~~~---d~~~~-e~~~~l~~~~~-p~e~~LVLdAt~~--~--~~l~~i~~~-f~~--~~~~g~IlTKlD 402 (484)
T PRK06995 335 KHIVLIDTIGMSQR---DRMVS-EQIAMLHGAGA-PVKRLLLLNATSH--G--DTLNEVVQA-YRG--PGLAGCILTKLD 402 (484)
T ss_pred CCeEEeCCCCcChh---hHHHH-HHHHHHhccCC-CCeeEEEEeCCCc--H--HHHHHHHHH-hcc--CCCCEEEEeCCC
Confidence 46899999996532 11122 22222222222 3447888888622 1 222233333 322 145678899999
Q ss_pred CCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCcc-ccccHHHHHHHHHHHHH
Q 036158 149 ELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKD-TAKRTEQVGKLLSLVNS 206 (225)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~l~~~i~~ 206 (225)
..... -.+-.++...+.++.++.+-... .......-+.|.+.+-.
T Consensus 403 et~~~-------------G~~l~i~~~~~lPI~yvt~GQ~VPeDL~~a~~~~lv~~ll~ 448 (484)
T PRK06995 403 EAASL-------------GGALDVVIRYKLPLHYVSNGQRVPEDLHLANKKFLLHRAFC 448 (484)
T ss_pred Ccccc-------------hHHHHHHHHHCCCeEEEecCCCChhhhccCCHHHHHHHHhc
Confidence 65432 11445666667777777654332 11222334455555443
No 366
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.48 E-value=1.2e-06 Score=72.64 Aligned_cols=145 Identities=17% Similarity=0.100 Sum_probs=79.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCc------cccccCC-CCC----------ceeEEEEEEEE-----------e--e
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKR------AFKSKAG-SSG----------VTKTCEMQRTM-----------L--K 66 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~------~~~~~~~-~~~----------~t~~~~~~~~~-----------~--~ 66 (225)
.+...|+++|++|+||||++..|...- +.-.... ... ........... . .
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~ 283 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYV 283 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhc
Confidence 446789999999999999997775321 1000000 000 00000000000 0 0
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 036158 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTG 146 (225)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k 146 (225)
.+..++||||||... .+.+...++....... .+|.+++|+++. .. ..+..+.+.. |.. ...--+|+||
T Consensus 284 ~~~D~VLIDTAGr~~---~d~~~l~EL~~l~~~~--~p~~~~LVLsag--~~--~~d~~~i~~~-f~~--l~i~glI~TK 351 (407)
T PRK12726 284 NCVDHILIDTVGRNY---LAEESVSEISAYTDVV--HPDLTCFTFSSG--MK--SADVMTILPK-LAE--IPIDGFIITK 351 (407)
T ss_pred CCCCEEEEECCCCCc---cCHHHHHHHHHHhhcc--CCceEEEECCCc--cc--HHHHHHHHHh-cCc--CCCCEEEEEc
Confidence 245789999999764 2344455555544332 457778887763 22 2234444433 322 2466889999
Q ss_pred CCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158 147 GDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK 186 (225)
Q Consensus 147 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (225)
.|...... .+-++....+.++.++.+-
T Consensus 352 LDET~~~G-------------~~Lsv~~~tglPIsylt~G 378 (407)
T PRK12726 352 MDETTRIG-------------DLYTVMQETNLPVLYMTDG 378 (407)
T ss_pred ccCCCCcc-------------HHHHHHHHHCCCEEEEecC
Confidence 99754321 1445666778777776653
No 367
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.47 E-value=1.1e-06 Score=74.79 Aligned_cols=96 Identities=19% Similarity=0.158 Sum_probs=53.9
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 036158 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGG 147 (225)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~ 147 (225)
+..++||||||.... +......+...+.. .....-+++|+++... ..+ +..+.+.|.. ....-+++||+
T Consensus 299 ~~DlVlIDt~G~~~~---d~~~~~~L~~ll~~-~~~~~~~~LVl~a~~~--~~~---l~~~~~~f~~--~~~~~vI~TKl 367 (424)
T PRK05703 299 DCDVILIDTAGRSQR---DKRLIEELKALIEF-SGEPIDVYLVLSATTK--YED---LKDIYKHFSR--LPLDGLIFTKL 367 (424)
T ss_pred CCCEEEEeCCCCCCC---CHHHHHHHHHHHhc-cCCCCeEEEEEECCCC--HHH---HHHHHHHhCC--CCCCEEEEecc
Confidence 357999999998533 33334445555442 2234567777887522 222 2222222322 13347899999
Q ss_pred CCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCC
Q 036158 148 DELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKT 187 (225)
Q Consensus 148 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (225)
|..... . .+.+++...+.++.++.+-.
T Consensus 368 Det~~~----G---------~i~~~~~~~~lPv~yit~Gq 394 (424)
T PRK05703 368 DETSSL----G---------SILSLLIESGLPISYLTNGQ 394 (424)
T ss_pred cccccc----c---------HHHHHHHHHCCCEEEEeCCC
Confidence 975432 1 14566677788877776643
No 368
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.47 E-value=1.4e-06 Score=73.27 Aligned_cols=143 Identities=15% Similarity=0.146 Sum_probs=75.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCc-------cccccCCC-CC----------ceeEEEEEEE----------EeeCCce
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKR-------AFKSKAGS-SG----------VTKTCEMQRT----------MLKDGQV 70 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~-------~~~~~~~~-~~----------~t~~~~~~~~----------~~~~~~~ 70 (225)
...|+++|++|+||||++..|.... +.-..... .. .......... . ..+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~-~~~~D 301 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLA-RDGSE 301 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHH-hCCCC
Confidence 4579999999999999998776422 10000000 00 0000000000 0 02457
Q ss_pred EEEEeCCCCCCCCCCcHHHHHHHHHHHhhcC-CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCC
Q 036158 71 VNVIDTPGLFDSSADSEFVSKEIVKCIGMTK-DGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDE 149 (225)
Q Consensus 71 ~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~ 149 (225)
++||||||+... +....+++...+.... ...+-.+||+++... ..+ + ..+.+.|.. ...--+|+||.|.
T Consensus 302 ~VLIDTaGr~~r---d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~--~-~~~~~~f~~--~~~~glIlTKLDE 371 (432)
T PRK12724 302 LILIDTAGYSHR---NLEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHH--T-LTVLKAYES--LNYRRILLTKLDE 371 (432)
T ss_pred EEEEeCCCCCcc---CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHH--H-HHHHHHhcC--CCCCEEEEEcccC
Confidence 899999998633 2334444544443321 234578889998632 212 2 222223322 2566889999997
Q ss_pred CCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeC
Q 036158 150 LEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDN 185 (225)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (225)
...... +-.+....+.++.++.+
T Consensus 372 t~~~G~-------------il~i~~~~~lPI~ylt~ 394 (432)
T PRK12724 372 ADFLGS-------------FLELADTYSKSFTYLSV 394 (432)
T ss_pred CCCccH-------------HHHHHHHHCCCEEEEec
Confidence 543211 34455566777766655
No 369
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.40 E-value=1.5e-05 Score=65.49 Aligned_cols=85 Identities=15% Similarity=0.154 Sum_probs=57.5
Q ss_pred ceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCC--------CCCHHHHHHH
Q 036158 54 VTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRN--------RFSEEEGAAI 125 (225)
Q Consensus 54 ~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~--------~~~~~~~~~~ 125 (225)
.|+...-..+.+ .+.++.++|.+|.- .-++-|..+..+++++|||+...+ ..+..-.+.+
T Consensus 181 ~T~GI~e~~F~~-k~~~f~~~DvGGQR-----------seRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~ 248 (354)
T KOG0082|consen 181 PTTGIVEVEFTI-KGLKFRMFDVGGQR-----------SERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESL 248 (354)
T ss_pred CcCCeeEEEEEe-CCCceEEEeCCCcH-----------HHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHH
Confidence 566666677888 78999999999942 223344457889999999998751 1122224445
Q ss_pred HHHHHHhccc--ccccEEEEEecCCCC
Q 036158 126 HILESLFGKK--ISDYMIVVFTGGDEL 150 (225)
Q Consensus 126 ~~l~~~~~~~--~~~~~~vv~~k~D~~ 150 (225)
+.+...+..+ ...++++.+||.|+.
T Consensus 249 ~LF~sI~n~~~F~~tsiiLFLNK~DLF 275 (354)
T KOG0082|consen 249 KLFESICNNKWFANTSIILFLNKKDLF 275 (354)
T ss_pred HHHHHHhcCcccccCcEEEEeecHHHH
Confidence 5555555444 235899999999976
No 370
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.38 E-value=6.7e-06 Score=70.10 Aligned_cols=92 Identities=14% Similarity=0.080 Sum_probs=53.7
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 036158 69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGD 148 (225)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D 148 (225)
..++|+||||.... +....+++....... .+|.+++|+|+... . ..++..+. |... ....-+|+||.|
T Consensus 176 ~DvVIIDTAGr~~~---d~~lm~El~~l~~~~--~pdevlLVvda~~g--q---~av~~a~~-F~~~-l~i~gvIlTKlD 243 (437)
T PRK00771 176 ADVIIVDTAGRHAL---EEDLIEEMKEIKEAV--KPDEVLLVIDATIG--Q---QAKNQAKA-FHEA-VGIGGIIITKLD 243 (437)
T ss_pred CCEEEEECCCcccc---hHHHHHHHHHHHHHh--cccceeEEEecccc--H---HHHHHHHH-HHhc-CCCCEEEEeccc
Confidence 37899999997633 344555555543322 56889999998643 2 33344443 3221 134578999999
Q ss_pred CCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeC
Q 036158 149 ELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDN 185 (225)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (225)
....... +-.+....+.++.++.+
T Consensus 244 ~~a~~G~-------------~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 244 GTAKGGG-------------ALSAVAETGAPIKFIGT 267 (437)
T ss_pred CCCcccH-------------HHHHHHHHCcCEEEEec
Confidence 6533211 34455556666666554
No 371
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.37 E-value=5.2e-07 Score=72.35 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=22.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
.....|.|+|++|+|||||++.+++.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45688999999999999999887754
No 372
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.36 E-value=1.1e-05 Score=57.97 Aligned_cols=164 Identities=13% Similarity=0.101 Sum_probs=95.4
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158 15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEI 93 (225)
Q Consensus 15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (225)
+....++|.++|....|||||+-...+...-.. ........+....+... -...+.+||..|.. +.
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~--~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~-----------~~ 82 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEE--YTQTLGVNFMDKTVSIRGTDISFSIWDLGGQR-----------EF 82 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHH--HHHHhCccceeeEEEecceEEEEEEEecCCcH-----------hh
Confidence 456679999999999999999988877653211 11111122222222221 12367899999953 44
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcc-cHHHHhhhcCCchHHHH
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDE-TLEDYLGRECPKPLKEI 172 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~-~~~~~~~~~~~~~~~~~ 172 (225)
.+++-.+...+-+++|.+|...+.+. ....+|.++..+-..-.-.++|.||-|..-.-+. ..+.... ..+..
T Consensus 83 ~n~lPiac~dsvaIlFmFDLt~r~TL--nSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~-----qar~Y 155 (205)
T KOG1673|consen 83 INMLPIACKDSVAILFMFDLTRRSTL--NSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISR-----QARKY 155 (205)
T ss_pred hccCceeecCcEEEEEEEecCchHHH--HHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHH-----HHHHH
Confidence 55665667788899999999854332 2355566655444322334678999886644321 2222222 25555
Q ss_pred HHHcCCcEEEeeCCCccccccHHHHHHHHHHH
Q 036158 173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLV 204 (225)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i 204 (225)
.+..+....+.+.. +..++...+..+
T Consensus 156 Ak~mnAsL~F~Sts------~sINv~KIFK~v 181 (205)
T KOG1673|consen 156 AKVMNASLFFCSTS------HSINVQKIFKIV 181 (205)
T ss_pred HHHhCCcEEEeecc------ccccHHHHHHHH
Confidence 55556555444332 336677766554
No 373
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.35 E-value=6.6e-06 Score=65.81 Aligned_cols=144 Identities=20% Similarity=0.187 Sum_probs=79.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc------ccccCCCC-----------CceeEEEEEEEE-----------e--eC
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA------FKSKAGSS-----------GVTKTCEMQRTM-----------L--KD 67 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~------~~~~~~~~-----------~~t~~~~~~~~~-----------~--~~ 67 (225)
+..+++++|++|+||||++..|.+.-. ........ ............ + ..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 457999999999999999987754311 00000000 000000101000 0 02
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 036158 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGG 147 (225)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~ 147 (225)
+..+.|+||||.... +....+++...+... .++-++||+++... .....+.++. |.. ...--+++||.
T Consensus 154 ~~D~ViIDt~Gr~~~---~~~~l~el~~~~~~~--~~~~~~LVl~a~~~----~~d~~~~~~~-f~~--~~~~~~I~TKl 221 (270)
T PRK06731 154 RVDYILIDTAGKNYR---ASETVEEMIETMGQV--EPDYICLTLSASMK----SKDMIEIITN-FKD--IHIDGIVFTKF 221 (270)
T ss_pred CCCEEEEECCCCCcC---CHHHHHHHHHHHhhh--CCCeEEEEEcCccC----HHHHHHHHHH-hCC--CCCCEEEEEee
Confidence 457899999997532 344555565554433 45778999998521 1223333333 222 25668899999
Q ss_pred CCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158 148 DELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK 186 (225)
Q Consensus 148 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (225)
|...... .+-++...++.+..++.+-
T Consensus 222 Det~~~G-------------~~l~~~~~~~~Pi~~it~G 247 (270)
T PRK06731 222 DETASSG-------------ELLKIPAVSSAPIVLMTDG 247 (270)
T ss_pred cCCCCcc-------------HHHHHHHHHCcCEEEEeCC
Confidence 9764321 1344556667777776653
No 374
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.35 E-value=1.2e-05 Score=67.52 Aligned_cols=96 Identities=14% Similarity=0.109 Sum_probs=54.5
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 036158 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTG 146 (225)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k 146 (225)
.+..++|+||||.... +.....++...+.... ..+-.+||+++... ..+ +.+.+..+ .. ..+--+++||
T Consensus 253 ~~~DlVLIDTaGr~~~---~~~~l~el~~~l~~~~-~~~e~~LVlsat~~--~~~--~~~~~~~~-~~--~~~~~~I~TK 321 (388)
T PRK12723 253 KDFDLVLVDTIGKSPK---DFMKLAEMKELLNACG-RDAEFHLAVSSTTK--TSD--VKEIFHQF-SP--FSYKTVIFTK 321 (388)
T ss_pred CCCCEEEEcCCCCCcc---CHHHHHHHHHHHHhcC-CCCeEEEEEcCCCC--HHH--HHHHHHHh-cC--CCCCEEEEEe
Confidence 3457999999997632 2223445555544332 23357899998633 222 22444443 11 1466889999
Q ss_pred CCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158 147 GDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK 186 (225)
Q Consensus 147 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (225)
.|...... .+-.+....+.++.++.+-
T Consensus 322 lDet~~~G-------------~~l~~~~~~~~Pi~yit~G 348 (388)
T PRK12723 322 LDETTCVG-------------NLISLIYEMRKEVSYVTDG 348 (388)
T ss_pred ccCCCcch-------------HHHHHHHHHCCCEEEEeCC
Confidence 99654321 1344555667776666553
No 375
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.34 E-value=3.7e-07 Score=74.89 Aligned_cols=63 Identities=22% Similarity=0.367 Sum_probs=49.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCC
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS 83 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~ 83 (225)
....++++|+|-+|+||||+||+|.....+.++. .++.|+..+. +. -+..|.|+|.||+.-..
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~-~pGvT~smqe--V~--Ldk~i~llDsPgiv~~~ 311 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGN-VPGVTRSMQE--VK--LDKKIRLLDSPGIVPPS 311 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccCCC-Cccchhhhhh--ee--ccCCceeccCCceeecC
Confidence 3667999999999999999999999999887754 5566665432 32 47789999999987443
No 376
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=9.1e-06 Score=62.79 Aligned_cols=125 Identities=18% Similarity=0.155 Sum_probs=67.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
.++|+++|..-+||||.-...+..-.....- .-..|.......+.. .-.++.+||.||.-++..+.-...
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTl-flESTski~~d~is~-sfinf~v~dfPGQ~~~Fd~s~D~e-------- 96 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETL-FLESTSKITRDHISN-SFINFQVWDFPGQMDFFDPSFDYE-------- 96 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCcee-EeeccCcccHhhhhh-hhcceEEeecCCccccCCCccCHH--------
Confidence 4679999999999999887665433211100 000111111111111 123678999999887654332221
Q ss_pred hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158 99 MTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN 153 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~ 153 (225)
+...++.++|||+|+.+.+-..-..+...+.....-....++=|.+.|.|.+.+.
T Consensus 97 ~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 97 MIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD 151 (347)
T ss_pred HHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence 1234669999999997432222222222222222222335677889999988654
No 377
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.27 E-value=4.3e-07 Score=74.57 Aligned_cols=64 Identities=23% Similarity=0.314 Sum_probs=49.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA 84 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (225)
..+++.|+++|-+|+||||+||.|-...++.+.+ -++.|..-++... -..|.|||+||+.....
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAP-IpGETKVWQYItL----mkrIfLIDcPGvVyps~ 367 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAP-IPGETKVWQYITL----MKRIFLIDCPGVVYPSS 367 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccccccC-CCCcchHHHHHHH----HhceeEecCCCccCCCC
Confidence 4678999999999999999999999999988754 4454544333322 34789999999986543
No 378
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.25 E-value=3.5e-05 Score=59.08 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCC
Q 036158 20 RNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
++|+++|+.|+|||||++.+++.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999988764
No 379
>PRK10867 signal recognition particle protein; Provisional
Probab=98.23 E-value=5.3e-05 Score=64.55 Aligned_cols=70 Identities=16% Similarity=0.156 Sum_probs=40.6
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 036158 69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGD 148 (225)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D 148 (225)
..++|+||||.... ++....++....... .++.+++|+|+.. ..+.....+.+.+.+ ...-+|+||.|
T Consensus 184 ~DvVIIDTaGrl~~---d~~lm~eL~~i~~~v--~p~evllVlda~~--gq~av~~a~~F~~~~-----~i~giIlTKlD 251 (433)
T PRK10867 184 YDVVIVDTAGRLHI---DEELMDELKAIKAAV--NPDEILLVVDAMT--GQDAVNTAKAFNEAL-----GLTGVILTKLD 251 (433)
T ss_pred CCEEEEeCCCCccc---CHHHHHHHHHHHHhh--CCCeEEEEEeccc--HHHHHHHHHHHHhhC-----CCCEEEEeCcc
Confidence 46999999996532 344444444433322 5677899999752 222223333333221 34578899999
Q ss_pred CC
Q 036158 149 EL 150 (225)
Q Consensus 149 ~~ 150 (225)
..
T Consensus 252 ~~ 253 (433)
T PRK10867 252 GD 253 (433)
T ss_pred Cc
Confidence 54
No 380
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.15 E-value=6.2e-05 Score=64.08 Aligned_cols=71 Identities=18% Similarity=0.173 Sum_probs=41.8
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 036158 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGG 147 (225)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~ 147 (225)
+..++|+||||... .+.....++...... -.++.++||+|+.. ..+.....+.+.+.. ...-+|+||.
T Consensus 182 ~~DvVIIDTaGr~~---~d~~l~~eL~~i~~~--~~p~e~lLVvda~t--gq~~~~~a~~f~~~v-----~i~giIlTKl 249 (428)
T TIGR00959 182 GFDVVIVDTAGRLQ---IDEELMEELAAIKEI--LNPDEILLVVDAMT--GQDAVNTAKTFNERL-----GLTGVVLTKL 249 (428)
T ss_pred CCCEEEEeCCCccc---cCHHHHHHHHHHHHh--hCCceEEEEEeccc--hHHHHHHHHHHHhhC-----CCCEEEEeCc
Confidence 34689999999753 233344444444332 25688899999862 222333333333322 3457789999
Q ss_pred CCC
Q 036158 148 DEL 150 (225)
Q Consensus 148 D~~ 150 (225)
|..
T Consensus 250 D~~ 252 (428)
T TIGR00959 250 DGD 252 (428)
T ss_pred cCc
Confidence 954
No 381
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=9.9e-06 Score=66.32 Aligned_cols=142 Identities=17% Similarity=0.142 Sum_probs=86.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCcccccc------------CCCCCceeEEEE--EE-------EEe---------
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSK------------AGSSGVTKTCEM--QR-------TML--------- 65 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~------------~~~~~~t~~~~~--~~-------~~~--------- 65 (225)
..-..+++++|.-.+|||||+--|+.....+.. ....+.|...-. .. +.+
T Consensus 164 qfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi 243 (591)
T KOG1143|consen 164 QFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEI 243 (591)
T ss_pred cceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHH
Confidence 445789999999999999999888755431110 001111111100 00 000
Q ss_pred --eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEE
Q 036158 66 --KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVV 143 (225)
Q Consensus 66 --~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv 143 (225)
.....++++|..|...+. +-....+..+ -+|-.++|+.++..++...++.+-.+..+ +.|++++
T Consensus 244 ~e~SSKlvTfiDLAGh~kY~-------~TTi~gLtgY--~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL-----~iPfFvl 309 (591)
T KOG1143|consen 244 VEKSSKLVTFIDLAGHAKYQ-------KTTIHGLTGY--TPHFACLVVSADRGITWTTREHLGLIAAL-----NIPFFVL 309 (591)
T ss_pred HhhhcceEEEeecccchhhh-------eeeeeecccC--CCceEEEEEEcCCCCccccHHHHHHHHHh-----CCCeEEE
Confidence 011258889998865321 1111111122 57999999999888888888888877775 3799999
Q ss_pred EecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158 144 FTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 178 (225)
Q Consensus 144 ~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (225)
++|+|+.... .++..+++ +.+++...|-
T Consensus 310 vtK~Dl~~~~--~~~~tv~~-----l~nll~~~Gc 337 (591)
T KOG1143|consen 310 VTKMDLVDRQ--GLKKTVKD-----LSNLLAKAGC 337 (591)
T ss_pred EEeeccccch--hHHHHHHH-----HHHHHhhcCc
Confidence 9999987664 66666655 5555555443
No 382
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=98.12 E-value=2.2e-06 Score=76.36 Aligned_cols=133 Identities=17% Similarity=0.176 Sum_probs=85.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEE-----------------------------------
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEM----------------------------------- 60 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~----------------------------------- 60 (225)
...-+.|+|+|..++||||.++++.|....+.+.. -.|+.+..
T Consensus 26 ~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~g--ivTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI 103 (657)
T KOG0446|consen 26 FIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVG--IVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEI 103 (657)
T ss_pred cccCCceEEecCCCCcchhHHHHhhcccccccccc--ceecccceeecccccCCcccchhccccccccccCCHHHHHHHH
Confidence 35568899999999999999999999765433211 01110000
Q ss_pred --------------------EEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCC
Q 036158 61 --------------------QRTMLKDGQVVNVIDTPGLFDSSA--DSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFS 118 (225)
Q Consensus 61 --------------------~~~~~~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~ 118 (225)
..+..+.-.+++++|+||+..... ..+.+..++...+..+....+.+|+.+... ..+
T Consensus 104 ~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~a-n~d 182 (657)
T KOG0446|consen 104 RSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPA-NSD 182 (657)
T ss_pred HhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccch-hhh
Confidence 001111223689999999986553 334677788888888888889888877543 222
Q ss_pred HHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158 119 EEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN 153 (225)
Q Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~ 153 (225)
-..-+.+...++. ......++.|+||+|.+...
T Consensus 183 ~ats~alkiarev--Dp~g~RTigvitK~DlmdkG 215 (657)
T KOG0446|consen 183 IATSPALVVAREV--DPGGSRTLEVITKFDFMDKG 215 (657)
T ss_pred hhcCHHHHHHHhh--CCCccchhHHhhhHHhhhcC
Confidence 2223355555554 12346899999999987544
No 383
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=2.5e-05 Score=58.00 Aligned_cols=119 Identities=19% Similarity=0.099 Sum_probs=70.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC-ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG-QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
....+++++|..|.||||++++.+-...........+ ...+...+....+ ..+..|||.|..-.....+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~G--v~~~pl~f~tn~g~irf~~wdtagqEk~gglrd-------- 77 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLG--VEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRD-------- 77 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcce--eEEeeeeeecccCcEEEEeeecccceeeccccc--------
Confidence 3478999999999999999988876664332222222 2222222221122 5899999999764432221
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELE 151 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~ 151 (225)
.++-.....|+.+|...+++-.. .++.+.+...+++ .|+++..||.|...
T Consensus 78 ---gyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~N---iPiv~cGNKvDi~~ 128 (216)
T KOG0096|consen 78 ---GYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVREN---IPIVLCGNKVDIKA 128 (216)
T ss_pred ---ccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcC---CCeeeeccceeccc
Confidence 12223455666677765554443 2344445544443 79999999999653
No 384
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.10 E-value=3.1e-05 Score=60.37 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=23.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAF 45 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~ 45 (225)
.=.|+++|++|||||||+|.+.|-...
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 356899999999999999999987653
No 385
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=2.5e-06 Score=67.94 Aligned_cols=170 Identities=16% Similarity=0.168 Sum_probs=96.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccc-cCCCCCcee----------------------------------EEEEEE
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKS-KAGSSGVTK----------------------------------TCEMQR 62 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~-~~~~~~~t~----------------------------------~~~~~~ 62 (225)
-.++|+-+|+...||||++.++.|-.-... ..-....|. .|+...
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g 116 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG 116 (466)
T ss_pred eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence 358899999999999999999987542100 000111111 111111
Q ss_pred EE--eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCC----CCCHHHHHHHHHHHHHhcccc
Q 036158 63 TM--LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRN----RFSEEEGAAIHILESLFGKKI 136 (225)
Q Consensus 63 ~~--~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~----~~~~~~~~~~~~l~~~~~~~~ 136 (225)
.. +.--+++.++|+||++- . +..++.. .--.|+.++++.+.. +.+.+....++.++-
T Consensus 117 ~~~~~klvRHVSfVDCPGHDi--------L--MaTMLnG-aAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~L------ 179 (466)
T KOG0466|consen 117 CEGKMKLVRHVSFVDCPGHDI--------L--MATMLNG-AAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKL------ 179 (466)
T ss_pred CCCceEEEEEEEeccCCchHH--------H--HHHHhcc-hHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhh------
Confidence 10 10124789999999751 1 1111111 112377777776652 344444445555443
Q ss_pred cccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCC
Q 036158 137 SDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQP 215 (225)
Q Consensus 137 ~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~ 215 (225)
++++++-||+|+...+ ...+++ ++ ++..+...... -.+..+.||.-..+++.+.++|.+.++..-+.|
T Consensus 180 -khiiilQNKiDli~e~-~A~eq~-e~-----I~kFi~~t~ae---~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf 247 (466)
T KOG0466|consen 180 -KHIIILQNKIDLIKES-QALEQH-EQ-----IQKFIQGTVAE---GAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDF 247 (466)
T ss_pred -ceEEEEechhhhhhHH-HHHHHH-HH-----HHHHHhccccC---CCceeeehhhhccChHHHHHHHHhcCCCCcccc
Confidence 8999999999988654 223332 22 45555443221 112345566667899999999988776665544
No 386
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.05 E-value=1.9e-05 Score=62.15 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=21.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 20 RNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
-.++|+|++|+|||||+.+|+|.-
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999999943
No 387
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.03 E-value=4e-07 Score=67.17 Aligned_cols=169 Identities=13% Similarity=0.156 Sum_probs=100.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc---eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ---VVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~---~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
-.+++|+|.-|+||||++...+....... ...............| +.. .+.|||..|...+. .
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~--yRAtIgvdfalkVl~w-dd~t~vRlqLwdIagQerfg-----------~ 90 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYH--YRATIGVDFALKVLQW-DDKTIVRLQLWDIAGQERFG-----------N 90 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHH--HHHHHhHHHHHHHhcc-ChHHHHHHHHhcchhhhhhc-----------c
Confidence 46899999999999999988775542111 0111111122222344 222 67899999976442 2
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHH-----hcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESL-----FGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 170 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~ 170 (225)
+..-++..+++..+|+|.+...+.+- ..+|.+.. +..+...|++++-||+|.-+.. ..+. -+
T Consensus 91 mtrVyykea~~~~iVfdvt~s~tfe~--~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a---~~~~--------~~ 157 (229)
T KOG4423|consen 91 MTRVYYKEAHGAFIVFDVTRSLTFEP--VSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSA---KNEA--------TR 157 (229)
T ss_pred eEEEEecCCcceEEEEEccccccccH--HHHHHHhccCcccCCCCCcchheeccchhccChHh---hhhh--------HH
Confidence 33347788999999999975444332 33333332 2223346889999999965543 1111 11
Q ss_pred HHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCC
Q 036158 171 EILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPY 216 (225)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~ 216 (225)
.+-..|+.+ -|..-..++++...+++|..+.+.+++--+.+++.
T Consensus 158 ~~d~f~ken--gf~gwtets~Kenkni~Ea~r~lVe~~lvnd~q~~ 201 (229)
T KOG4423|consen 158 QFDNFKKEN--GFEGWTETSAKENKNIPEAQRELVEKILVNDEQPI 201 (229)
T ss_pred HHHHHHhcc--CccceeeeccccccChhHHHHHHHHHHHhhccCCc
Confidence 122222221 13334456677779999999988888877776554
No 388
>PRK01889 GTPase RsgA; Reviewed
Probab=98.03 E-value=4.3e-06 Score=69.78 Aligned_cols=60 Identities=33% Similarity=0.499 Sum_probs=37.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCC------CCCceeEEEEEEEEeeCCceEEEEeCCCCCCC
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAG------SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDS 82 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~ 82 (225)
.-+++++|.+|+|||||+|.|++......+.. ...+|+..... .++.+ ..++||||+.+.
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~--~l~~~--~~l~DtpG~~~~ 260 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELH--PLPSG--GLLIDTPGMREL 260 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEE--EecCC--CeecCCCchhhh
Confidence 45899999999999999999998654322211 11123322222 23222 358899998654
No 389
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.00 E-value=2.2e-05 Score=57.76 Aligned_cols=91 Identities=15% Similarity=0.143 Sum_probs=56.9
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158 100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 179 (225)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (225)
....+|++++|+|+..+....+..+.+.+... ...+|+++|+||+|+.+.. ....+ ...++.. ..
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~---~~~~p~ilVlNKiDl~~~~--~~~~~---------~~~~~~~-~~ 69 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLKKE---KPHKHLIFVLNKCDLVPTW--VTARW---------VKILSKE-YP 69 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHHhc---cCCCCEEEEEEchhcCCHH--HHHHH---------HHHHhcC-Cc
Confidence 44577999999999866665566666666542 1137999999999986432 22222 2222211 11
Q ss_pred EEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 180 CVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 180 ~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
.. ..+.|+..+.++++|++.+.++..
T Consensus 70 ~~----~~~iSa~~~~~~~~L~~~l~~~~~ 95 (157)
T cd01858 70 TI----AFHASINNPFGKGSLIQLLRQFSK 95 (157)
T ss_pred EE----EEEeeccccccHHHHHHHHHHHHh
Confidence 11 134556677899999999987753
No 390
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.00 E-value=0.00028 Score=52.73 Aligned_cols=73 Identities=18% Similarity=0.144 Sum_probs=42.1
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 036158 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGG 147 (225)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~ 147 (225)
+..++++||||.... .......+...... ..++.+++|+++... ....+.+..+.+.. ...-+|+||.
T Consensus 82 ~~d~viiDt~g~~~~---~~~~l~~l~~l~~~--~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~-----~~~~viltk~ 149 (173)
T cd03115 82 NFDVVIVDTAGRLQI---DENLMEELKKIKRV--VKPDEVLLVVDAMTG--QDAVNQAKAFNEAL-----GITGVILTKL 149 (173)
T ss_pred CCCEEEEECcccchh---hHHHHHHHHHHHhh--cCCCeEEEEEECCCC--hHHHHHHHHHHhhC-----CCCEEEEECC
Confidence 446899999997532 22333444333221 247999999998522 22233333333322 2457888999
Q ss_pred CCCCC
Q 036158 148 DELED 152 (225)
Q Consensus 148 D~~~~ 152 (225)
|....
T Consensus 150 D~~~~ 154 (173)
T cd03115 150 DGDAR 154 (173)
T ss_pred cCCCC
Confidence 97654
No 391
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=1.6e-05 Score=65.68 Aligned_cols=145 Identities=20% Similarity=0.242 Sum_probs=88.0
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhCCccc-----------------------------cccCCCCCceeEEEEEEEEe
Q 036158 15 PSNGERNLVLVGRTGNGKSATANSILGKRAF-----------------------------KSKAGSSGVTKTCEMQRTML 65 (225)
Q Consensus 15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~~~ 65 (225)
+...+.+++++|+..+||||+-..|+..... .......+-|.......++.
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 3477899999999999999999887653320 01111345677788888888
Q ss_pred eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-----CCHH-HHHHHHHHHHHhccccccc
Q 036158 66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNR-----FSEE-EGAAIHILESLFGKKISDY 139 (225)
Q Consensus 66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~ 139 (225)
..+.++++|+||+-.+- -+++ .-..++|+-++|+.+... +..- +.+.-..+.+..+. ++
T Consensus 155 -e~~~ftiLDApGHk~fv----------~nmI-~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv---~~ 219 (501)
T KOG0459|consen 155 -ENKRFTILDAPGHKSFV----------PNMI-GGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGV---KH 219 (501)
T ss_pred -cceeEEeeccCcccccc----------hhhc-cccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhcc---ce
Confidence 78899999999987552 1111 234467888888877311 1000 11222233333333 78
Q ss_pred EEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158 140 MIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 140 ~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
.++++||+|..... .+.+.|-+ +...+...++..|
T Consensus 220 lVv~vNKMddPtvn-Ws~eRy~E--~~~k~~~fLr~~g 254 (501)
T KOG0459|consen 220 LIVLINKMDDPTVN-WSNERYEE--CKEKLQPFLRKLG 254 (501)
T ss_pred EEEEEEeccCCccC-cchhhHHH--HHHHHHHHHHHhc
Confidence 99999999976543 23333321 1222555565444
No 392
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.99 E-value=3.7e-05 Score=57.81 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=23.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
+.-.++|+|++|+|||||++.|.|...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 445789999999999999999998754
No 393
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.93 E-value=4.7e-05 Score=62.53 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=22.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccc
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAF 45 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~ 45 (225)
=.++++|++|||||||++.|.|-...
T Consensus 30 ef~vllGPSGcGKSTlLr~IAGLe~~ 55 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMIAGLEEP 55 (338)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45888999999999999999997753
No 394
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.93 E-value=0.00013 Score=61.18 Aligned_cols=70 Identities=16% Similarity=0.101 Sum_probs=45.8
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 036158 69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGD 148 (225)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D 148 (225)
..++|+||.|-.. -++++..++...-.. -++|=++||+|+.-+ ++-....+.+.+.. .-.=||+||.|
T Consensus 183 ~DvvIvDTAGRl~---ide~Lm~El~~Ik~~--~~P~E~llVvDam~G--QdA~~~A~aF~e~l-----~itGvIlTKlD 250 (451)
T COG0541 183 YDVVIVDTAGRLH---IDEELMDELKEIKEV--INPDETLLVVDAMIG--QDAVNTAKAFNEAL-----GITGVILTKLD 250 (451)
T ss_pred CCEEEEeCCCccc---ccHHHHHHHHHHHhh--cCCCeEEEEEecccc--hHHHHHHHHHhhhc-----CCceEEEEccc
Confidence 4699999999653 356666666554333 378999999998633 22333444555443 34568899999
Q ss_pred CC
Q 036158 149 EL 150 (225)
Q Consensus 149 ~~ 150 (225)
.-
T Consensus 251 Gd 252 (451)
T COG0541 251 GD 252 (451)
T ss_pred CC
Confidence 54
No 395
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.92 E-value=0.00017 Score=52.58 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=18.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q 036158 21 NLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~ 41 (225)
+|+++|+.|+||||++..+..
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 378999999999999987753
No 396
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.91 E-value=0.00018 Score=60.21 Aligned_cols=129 Identities=19% Similarity=0.250 Sum_probs=69.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcc-----------------ccccCCCCCceeEEEEE-----EEEeeCC--ceEE
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRA-----------------FKSKAGSSGVTKTCEMQ-----RTMLKDG--QVVN 72 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~-----------------~~~~~~~~~~t~~~~~~-----~~~~~~~--~~~~ 72 (225)
...+.|+|+|+.-+||||||..+...-+ .+++.+..-.|+++.+. .+.+.++ .+++
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR 94 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR 94 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence 4568999999999999999998764322 12222222334444332 2333222 3899
Q ss_pred EEeCCCCCCCCCCc--HHHHHHH------------HHHHhh------cCCCccEEEEEEeCC------CCCCHHHHHHHH
Q 036158 73 VIDTPGLFDSSADS--EFVSKEI------------VKCIGM------TKDGIHAVLVVFSVR------NRFSEEEGAAIH 126 (225)
Q Consensus 73 liDtPG~~~~~~~~--~~~~~~~------------~~~~~~------~~~~~~~ii~v~~~~------~~~~~~~~~~~~ 126 (225)
++|+-|+-=..+.. +.-..++ ..+..- ..+..=++++..|.+ +.+-..+.+.++
T Consensus 95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ 174 (492)
T PF09547_consen 95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE 174 (492)
T ss_pred EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence 99999984211110 0000000 111100 011112445545553 123344566777
Q ss_pred HHHHHhcccccccEEEEEecCCCC
Q 036158 127 ILESLFGKKISDYMIVVFTGGDEL 150 (225)
Q Consensus 127 ~l~~~~~~~~~~~~~vv~~k~D~~ 150 (225)
.|+++ .+|++|++|-.+..
T Consensus 175 ELk~i-----gKPFvillNs~~P~ 193 (492)
T PF09547_consen 175 ELKEI-----GKPFVILLNSTKPY 193 (492)
T ss_pred HHHHh-----CCCEEEEEeCCCCC
Confidence 77775 48999999988744
No 397
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.89 E-value=0.00043 Score=56.00 Aligned_cols=28 Identities=21% Similarity=0.559 Sum_probs=24.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
....+|+|+|..|+||||||..|-|.+-
T Consensus 50 psgk~VlvlGdn~sGKtsLi~klqg~e~ 77 (473)
T KOG3905|consen 50 PSGKNVLVLGDNGSGKTSLISKLQGSET 77 (473)
T ss_pred CCCCeEEEEccCCCchhHHHHHhhcccc
Confidence 4567899999999999999999998773
No 398
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.88 E-value=0.00016 Score=53.02 Aligned_cols=89 Identities=15% Similarity=0.113 Sum_probs=53.5
Q ss_pred CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcE
Q 036158 101 KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 180 (225)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (225)
...+|++++|+|+.++....+..+.+.+.. ..+|+++|+||+|..+.. ... . +..+.+..+.++
T Consensus 10 ~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~~~~--~~~----~-----~~~~~~~~~~~~ 73 (156)
T cd01859 10 IKESDVVLEVLDARDPELTRSRKLERYVLE-----LGKKLLIVLNKADLVPKE--VLE----K-----WKSIKESEGIPV 73 (156)
T ss_pred HhhCCEEEEEeeCCCCcccCCHHHHHHHHh-----CCCcEEEEEEhHHhCCHH--HHH----H-----HHHHHHhCCCcE
Confidence 345799999999975544444344333322 137999999999975321 111 1 122222222222
Q ss_pred EEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 181 VLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 181 ~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
...|+.++.++++|++.+.++++..
T Consensus 74 ------~~iSa~~~~gi~~L~~~l~~~~~~~ 98 (156)
T cd01859 74 ------VYVSAKERLGTKILRRTIKELAKID 98 (156)
T ss_pred ------EEEEccccccHHHHHHHHHHHHhhc
Confidence 2345566789999999999887653
No 399
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.86 E-value=0.00045 Score=51.89 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=24.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.+.-.++++|++|+|||||++.|.|...
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 4556899999999999999999998753
No 400
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=97.85 E-value=0.00013 Score=58.22 Aligned_cols=67 Identities=28% Similarity=0.268 Sum_probs=46.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCc-cccccCCCCCceeEEEEEEEEe--eCCceEEEEeCCCCCCC
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKR-AFKSKAGSSGVTKTCEMQRTML--KDGQVVNVIDTPGLFDS 82 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~-~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~liDtPG~~~~ 82 (225)
..+...|.|+|+..+|||.|+|.|++.. .|...+...+.|...-...... .++..+.++||.|+.+.
T Consensus 18 ~~~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~~ 87 (260)
T PF02263_consen 18 DQPVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGDV 87 (260)
T ss_dssp TSBEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTTT
T ss_pred CCCEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhcccc
Confidence 3556789999999999999999999753 4555554555666544333222 13458999999999884
No 401
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.83 E-value=4.8e-05 Score=57.80 Aligned_cols=100 Identities=11% Similarity=-0.062 Sum_probs=58.2
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHH-H
Q 036158 93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK-E 171 (225)
Q Consensus 93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~-~ 171 (225)
+...+..+...+|++++|+|+.+........+ .... ..+|+++|+||+|+.... ........ +. .
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l----~~~~---~~~~~ilV~NK~Dl~~~~--~~~~~~~~-----~~~~ 89 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRL----RLFG---GNNPVILVGNKIDLLPKD--KNLVRIKN-----WLRA 89 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchhH----HHhc---CCCcEEEEEEchhcCCCC--CCHHHHHH-----HHHH
Confidence 46666778889999999999974433322222 1111 237999999999986542 11111111 11 0
Q ss_pred H-HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 172 I-LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 172 ~-~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
. .+..+.. +......|+.++.++++|++.|.++++
T Consensus 90 ~~~~~~~~~---~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 90 KAAAGLGLK---PKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred HHHhhcCCC---cccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 1 1111211 112234566777999999999988775
No 402
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.81 E-value=0.001 Score=48.52 Aligned_cols=118 Identities=12% Similarity=0.206 Sum_probs=64.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhC---CccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCC----------CCCCC
Q 036158 18 GERNLVLVGRTGNGKSATANSILG---KRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTP----------GLFDS 82 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~---~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtP----------G~~~~ 82 (225)
..++|.+.|++|+||||++..+.. ...+.+.. ..|.+.. - ++. .+.++|+. |+...
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgG---f~t~EVR-----~-gGkR~GF~Ivdl~tg~~~~la~~~~~~~ 74 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGG---FITPEVR-----E-GGKRIGFKIVDLATGEEGILARVGFSRP 74 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeee---EEeeeee-----c-CCeEeeeEEEEccCCceEEEEEcCCCCc
Confidence 358999999999999999976652 22121110 0111111 0 111 34444444 11111
Q ss_pred C-----CCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 036158 83 S-----ADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGD 148 (225)
Q Consensus 83 ~-----~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D 148 (225)
. .+-+...+....++..+...+|++|+- .+. ++......+.+.+.+.++++ +|++.++.+-+
T Consensus 75 rvGkY~V~v~~le~i~~~al~rA~~~aDvIIID-EIG-pMElks~~f~~~ve~vl~~~--kpliatlHrrs 141 (179)
T COG1618 75 RVGKYGVNVEGLEEIAIPALRRALEEADVIIID-EIG-PMELKSKKFREAVEEVLKSG--KPLIATLHRRS 141 (179)
T ss_pred ccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEe-ccc-chhhccHHHHHHHHHHhcCC--CcEEEEEeccc
Confidence 1 122334445556666666667877652 223 55555677888888888765 78776666554
No 403
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.80 E-value=0.00023 Score=57.41 Aligned_cols=94 Identities=13% Similarity=0.147 Sum_probs=58.1
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
.+.+......+|++++|+|+..+.+..+..+.+.+. .+|+++|+||+|+.+.. .... |.+.+
T Consensus 12 ~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~-------~kp~IiVlNK~DL~~~~--~~~~---------~~~~~ 73 (276)
T TIGR03596 12 RREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG-------NKPRLIVLNKADLADPA--VTKQ---------WLKYF 73 (276)
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC-------CCCEEEEEEccccCCHH--HHHH---------HHHHH
Confidence 334445556779999999997666655544444432 27999999999975331 1222 22233
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
+..+..++.+ |+.++.++++|++.+.+++++.
T Consensus 74 ~~~~~~vi~i------Sa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 74 EEKGIKALAI------NAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred HHcCCeEEEE------ECCCcccHHHHHHHHHHHHHHh
Confidence 3323233333 3445678999999998887654
No 404
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.79 E-value=0.00011 Score=64.16 Aligned_cols=29 Identities=34% Similarity=0.456 Sum_probs=25.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAF 45 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~ 45 (225)
.+.-+|+|+|.+|+|||||++.|.|....
T Consensus 27 ~~G~riGLvG~NGaGKSTLLkilaG~~~~ 55 (530)
T COG0488 27 NPGERIGLVGRNGAGKSTLLKILAGELEP 55 (530)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCcC
Confidence 45679999999999999999999998753
No 405
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.79 E-value=7.4e-05 Score=65.79 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=24.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
++.-+++++|++|+|||||++.|+|...
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3556789999999999999999998764
No 406
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.78 E-value=0.00033 Score=50.83 Aligned_cols=27 Identities=37% Similarity=0.492 Sum_probs=23.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
+.-.++|+|++|+|||||++.|.|...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 445689999999999999999998764
No 407
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.76 E-value=0.00023 Score=52.94 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=24.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.+.-.++|+|++|+|||||++.|.|...
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3456789999999999999999998754
No 408
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.00038 Score=58.67 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=22.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
-+|+++|+.|+|||||+..|+|.-.
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gkl~ 638 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGKLD 638 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcCCC
Confidence 5799999999999999999998653
No 409
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.69 E-value=0.00018 Score=54.00 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhC
Q 036158 19 ERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
.++|.|.|++|||||+||..++.
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~ 35 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLR 35 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHH
Confidence 48999999999999999977664
No 410
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.68 E-value=0.00072 Score=50.56 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=23.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.+.-.++|+|++|+|||||++.|.|...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3445799999999999999999998753
No 411
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.67 E-value=0.00051 Score=55.88 Aligned_cols=147 Identities=16% Similarity=0.162 Sum_probs=79.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCC------ccccccCCC-C----------CceeEEEEEEEEe-------------
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGK------RAFKSKAGS-S----------GVTKTCEMQRTML------------- 65 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~------~~~~~~~~~-~----------~~t~~~~~~~~~~------------- 65 (225)
.+....|+++|-+|+||||.|-.|... ++....... + +....+.......
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~ 215 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ 215 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence 345789999999999999999766422 111000000 0 0000000000000
Q ss_pred ---eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH---hhcC-CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccc
Q 036158 66 ---KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI---GMTK-DGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISD 138 (225)
Q Consensus 66 ---~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 138 (225)
..+..++|+||.|--.. ...++.++.+.. .... ..+|-+++|+|+..+ +.-..-.+.+.+.. .
T Consensus 216 ~Akar~~DvvliDTAGRLhn---k~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG--qnal~QAk~F~eav-----~ 285 (340)
T COG0552 216 AAKARGIDVVLIDTAGRLHN---KKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG--QNALSQAKIFNEAV-----G 285 (340)
T ss_pred HHHHcCCCEEEEeCcccccC---chhHHHHHHHHHHHhccccCCCCceEEEEEEcccC--hhHHHHHHHHHHhc-----C
Confidence 13346999999996533 334444444433 2222 346779999998633 33334445555543 2
Q ss_pred cEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeC
Q 036158 139 YMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDN 185 (225)
Q Consensus 139 ~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (225)
-.=+++||.|..... -.+-.+....+.++.++.-
T Consensus 286 l~GiIlTKlDgtAKG-------------G~il~I~~~l~~PI~fiGv 319 (340)
T COG0552 286 LDGIILTKLDGTAKG-------------GIILSIAYELGIPIKFIGV 319 (340)
T ss_pred CceEEEEecccCCCc-------------ceeeeHHHHhCCCEEEEeC
Confidence 346899999954322 1134456666777776654
No 412
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.66 E-value=0.00024 Score=53.30 Aligned_cols=25 Identities=32% Similarity=0.296 Sum_probs=21.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
.+.-.++|+|++|+|||||++.+++
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh
Confidence 4556899999999999999999974
No 413
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.66 E-value=0.0004 Score=51.84 Aligned_cols=92 Identities=18% Similarity=0.202 Sum_probs=53.8
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
.+.+......+|++++|+|+..+....+..+++.+ . .+|+++|+||+|+.... .... +.+.+
T Consensus 10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~----~---~k~~ilVlNK~Dl~~~~--~~~~---------~~~~~ 71 (171)
T cd01856 10 LRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL----G---NKPRIIVLNKADLADPK--KTKK---------WLKYF 71 (171)
T ss_pred HHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh----c---CCCEEEEEehhhcCChH--HHHH---------HHHHH
Confidence 33344455567999999999755554443333322 1 26899999999985331 1111 22222
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
+..+.+++. .|+.++.++++|.+.+.+.+.
T Consensus 72 ~~~~~~vi~------iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 72 ESKGEKVLF------VNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred HhcCCeEEE------EECCCcccHHHHHHHHHHHHH
Confidence 222222222 344556889999999988753
No 414
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.65 E-value=0.00019 Score=55.52 Aligned_cols=46 Identities=20% Similarity=0.176 Sum_probs=29.6
Q ss_pred CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 036158 101 KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDEL 150 (225)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~ 150 (225)
..++|.+|.|+|.+ . ...+..+.+.++-++-..+++.+|+||+|..
T Consensus 153 ~~~vD~vivVvDpS-~---~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 153 IEGVDLVIVVVDPS-Y---KSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred ccCCCEEEEEeCCc-H---HHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 46789999999986 2 2233344444432221138999999999954
No 415
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00033 Score=60.72 Aligned_cols=28 Identities=39% Similarity=0.490 Sum_probs=25.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
++.-+++++|++|+|||||+|.|.|...
T Consensus 345 ~~g~~talvG~SGaGKSTLl~lL~G~~~ 372 (559)
T COG4988 345 KAGQLTALVGASGAGKSTLLNLLLGFLA 372 (559)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCcCC
Confidence 5567899999999999999999999775
No 416
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.64 E-value=0.00043 Score=52.68 Aligned_cols=78 Identities=17% Similarity=0.189 Sum_probs=43.5
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHH---HHHHHHHHhcccccccEEEEEec
Q 036158 70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGA---AIHILESLFGKKISDYMIVVFTG 146 (225)
Q Consensus 70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~vv~~k 146 (225)
.+.++|+||..+-- .--.+..++.+.+..-.-++ .++|+++.. -+....+- .+..+.... ....|.+-|++|
T Consensus 99 dylifDcPGQIELy-tH~pVm~~iv~hl~~~~F~~-c~Vylldsq-f~vD~~KfiSG~lsAlsAMi--~lE~P~INvlsK 173 (273)
T KOG1534|consen 99 DYLIFDCPGQIELY-THLPVMPQIVEHLKQWNFNV-CVVYLLDSQ-FLVDSTKFISGCLSALSAMI--SLEVPHINVLSK 173 (273)
T ss_pred CEEEEeCCCeeEEe-ecChhHHHHHHHHhcccCce-eEEEEeccc-hhhhHHHHHHHHHHHHHHHH--HhcCcchhhhhH
Confidence 58899999987542 12235566666665522122 355555653 22222211 222222221 234789999999
Q ss_pred CCCCCC
Q 036158 147 GDELED 152 (225)
Q Consensus 147 ~D~~~~ 152 (225)
+|++++
T Consensus 174 MDLlk~ 179 (273)
T KOG1534|consen 174 MDLLKD 179 (273)
T ss_pred HHHhhh
Confidence 998876
No 417
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.62 E-value=0.00083 Score=55.19 Aligned_cols=125 Identities=21% Similarity=0.215 Sum_probs=66.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCcccc----------c-cCCCCCceeEEEEEEEEee----------------------
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFK----------S-KAGSSGVTKTCEMQRTMLK---------------------- 66 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~----------~-~~~~~~~t~~~~~~~~~~~---------------------- 66 (225)
+..+|-|.=|||||||||.|+....-. . +-.....-..+....+++.
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~ 81 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR 81 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence 567889999999999999998655310 0 0000000000111111221
Q ss_pred -CCceEEEEeCCCCCCCCCCcHHHHHHHHH-HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEE
Q 036158 67 -DGQVVNVIDTPGLFDSSADSEFVSKEIVK-CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVF 144 (225)
Q Consensus 67 -~~~~~~liDtPG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~ 144 (225)
+.....+|.|-|+.++. .+...+.. ......-..|.++-|+|+. .+...... +.+.+..+...-=++++
T Consensus 82 ~~~~D~ivIEtTGlA~P~----pv~~t~~~~~~l~~~~~ld~vvtvVDa~-~~~~~~~~----~~~~~~~Qia~AD~ivl 152 (323)
T COG0523 82 RDRPDRLVIETTGLADPA----PVIQTFLTDPELADGVRLDGVVTVVDAA-HFLEGLDA----IAELAEDQLAFADVIVL 152 (323)
T ss_pred cCCCCEEEEeCCCCCCCH----HHHHHhccccccccceeeceEEEEEeHH-HhhhhHHH----HHHHHHHHHHhCcEEEE
Confidence 22457899999987652 11111111 0111223568899999997 43322211 22333233334558999
Q ss_pred ecCCCCCCC
Q 036158 145 TGGDELEDN 153 (225)
Q Consensus 145 ~k~D~~~~~ 153 (225)
||.|...+.
T Consensus 153 NK~Dlv~~~ 161 (323)
T COG0523 153 NKTDLVDAE 161 (323)
T ss_pred ecccCCCHH
Confidence 999988764
No 418
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.62 E-value=0.00052 Score=50.84 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=24.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.+.-.++|+|++|+|||||++.|.|...
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3446789999999999999999998764
No 419
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.59 E-value=0.0003 Score=54.37 Aligned_cols=19 Identities=37% Similarity=0.629 Sum_probs=16.1
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 036158 22 LVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 22 i~v~G~~g~GKSSlin~l~ 40 (225)
-+|+|++||||||..+.+.
T Consensus 5 qvVIGPPgSGKsTYc~g~~ 23 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMS 23 (290)
T ss_pred eEEEcCCCCCccchhhhHH
Confidence 5789999999999987653
No 420
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.59 E-value=0.00038 Score=49.13 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 036158 22 LVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 22 i~v~G~~g~GKSSlin~l~~~ 42 (225)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998843
No 421
>PRK13695 putative NTPase; Provisional
Probab=97.58 E-value=0.00062 Score=50.96 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhC
Q 036158 20 RNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~ 41 (225)
++|+|.|.+|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998754
No 422
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.58 E-value=0.00072 Score=54.88 Aligned_cols=93 Identities=15% Similarity=0.200 Sum_probs=56.7
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
+.+......+|++|+|+|+..+++.....+.+.+. .+|+++|+||+|+.+.. ..+. |.+.++
T Consensus 16 ~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~-------~kp~iiVlNK~DL~~~~--~~~~---------~~~~~~ 77 (287)
T PRK09563 16 REIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG-------NKPRLLILNKSDLADPE--VTKK---------WIEYFE 77 (287)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC-------CCCEEEEEEchhcCCHH--HHHH---------HHHHHH
Confidence 33444555679999999997666655544433332 27999999999975321 1222 223333
Q ss_pred HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
..+..++.+ |+.++.++++|++.+.+++++.
T Consensus 78 ~~~~~vi~v------Sa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 78 EQGIKALAI------NAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred HcCCeEEEE------ECCCcccHHHHHHHHHHHHHHH
Confidence 323333333 3445678999999998887654
No 423
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.0004 Score=59.25 Aligned_cols=142 Identities=19% Similarity=0.279 Sum_probs=81.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCC--------------CCCceeEEEEEEEEe---------------e
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAG--------------SSGVTKTCEMQRTML---------------K 66 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~--------------~~~~t~~~~~~~~~~---------------~ 66 (225)
..+..++.|+.+...|||||..+|.......+... ..+.|.........+ .
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 45567899999999999999999885543222111 122333333222111 1
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 036158 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTG 146 (225)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k 146 (225)
++..++|||.||+.|+.. ++ -.+.+-.|+.+.|+|--++..-.+...+ ++..+++ ...++++||
T Consensus 96 ~~FLiNLIDSPGHVDFSS-------EV----TAALRVTDGALVVVDcv~GvCVQTETVL---rQA~~ER--IkPvlv~NK 159 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSS-------EV----TAALRVTDGALVVVDCVSGVCVQTETVL---RQAIAER--IKPVLVMNK 159 (842)
T ss_pred cceeEEeccCCCcccchh-------hh----hheeEeccCcEEEEEccCceEechHHHH---HHHHHhh--ccceEEeeh
Confidence 334799999999998742 12 1234455888888886545443333333 3333333 333679999
Q ss_pred CCCCCCC-cccHHHHhhhcCCchHHHHHHHcCC
Q 036158 147 GDELEDN-DETLEDYLGRECPKPLKEILQLCDN 178 (225)
Q Consensus 147 ~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (225)
+|..--+ +-..++..+. ++++.+..+.
T Consensus 160 ~DRAlLELq~~~EeLyqt-----f~R~VE~vNv 187 (842)
T KOG0469|consen 160 MDRALLELQLSQEELYQT-----FQRIVENVNV 187 (842)
T ss_pred hhHHHHhhcCCHHHHHHH-----HHHHHhcccE
Confidence 9953111 1234444444 6777766554
No 424
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.56 E-value=0.00031 Score=50.66 Aligned_cols=49 Identities=12% Similarity=0.085 Sum_probs=36.4
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158 100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELE 151 (225)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~ 151 (225)
....+|++++|+|+..+.+..+..+.+.+.+.. ..+|+++|+||+|+.+
T Consensus 8 ~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~---~~k~~iivlNK~DL~~ 56 (141)
T cd01857 8 VVERSDIVVQIVDARNPLLFRPPDLERYVKEVD---PRKKNILLLNKADLLT 56 (141)
T ss_pred HHhhCCEEEEEEEccCCcccCCHHHHHHHHhcc---CCCcEEEEEechhcCC
Confidence 344669999999997666666666677766542 1379999999999754
No 425
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.56 E-value=0.00026 Score=63.23 Aligned_cols=27 Identities=33% Similarity=0.582 Sum_probs=24.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
++.-+++++|++|+|||||++.|+|..
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355778999999999999999999876
No 426
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.56 E-value=8e-05 Score=56.88 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=25.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKS 47 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~ 47 (225)
.+.=.++++|++|||||||+++|.+......
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~ 56 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGLEEPDS 56 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCcCCCC
Confidence 3445789999999999999999998775443
No 427
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.55 E-value=8.4e-05 Score=45.41 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=18.1
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 036158 21 NLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~ 40 (225)
..+|.|++|+||||++.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999998865
No 428
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.55 E-value=0.00066 Score=55.84 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 18 GERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
+.+..+|.|.-|||||||+|.++..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 4578899999999999999999854
No 429
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.00085 Score=55.52 Aligned_cols=73 Identities=15% Similarity=0.126 Sum_probs=46.6
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 036158 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTG 146 (225)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k 146 (225)
++..++|+||.|-. ....++.+++....... .+|-+|||+|+.-.. .-....+.+++.. .-.-+++||
T Consensus 182 e~fdvIIvDTSGRh---~qe~sLfeEM~~v~~ai--~Pd~vi~VmDasiGQ--aae~Qa~aFk~~v-----dvg~vIlTK 249 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRH---KQEASLFEEMKQVSKAI--KPDEIIFVMDASIGQ--AAEAQARAFKETV-----DVGAVILTK 249 (483)
T ss_pred cCCcEEEEeCCCch---hhhHHHHHHHHHHHhhc--CCCeEEEEEeccccH--hHHHHHHHHHHhh-----ccceEEEEe
Confidence 44579999999965 33456666666654333 689999999996332 2223344444432 244678899
Q ss_pred CCCCC
Q 036158 147 GDELE 151 (225)
Q Consensus 147 ~D~~~ 151 (225)
.|...
T Consensus 250 lDGha 254 (483)
T KOG0780|consen 250 LDGHA 254 (483)
T ss_pred cccCC
Confidence 88653
No 430
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.55 E-value=0.008 Score=51.98 Aligned_cols=27 Identities=22% Similarity=0.534 Sum_probs=23.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
.+...|+|+|..++||||||.+|.+..
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e 49 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIE 49 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccC
Confidence 455789999999999999999998654
No 431
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.54 E-value=8.6e-05 Score=53.42 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhCCc
Q 036158 22 LVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 22 i~v~G~~g~GKSSlin~l~~~~ 43 (225)
|+|+|++|+||||+++.|.+..
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999999763
No 432
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.54 E-value=7.8e-05 Score=57.79 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=23.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
++.=.++++|++|||||||+|.|-+-..
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 3445789999999999999999987664
No 433
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.54 E-value=0.00041 Score=51.81 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=23.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
+.-.++|+|++|+|||||++.|.|...
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 446789999999999999999999764
No 434
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.53 E-value=0.00062 Score=50.92 Aligned_cols=28 Identities=36% Similarity=0.550 Sum_probs=23.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.+.-.++++|++|+|||||++.|.|...
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 3445789999999999999999998754
No 435
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.52 E-value=0.00033 Score=61.72 Aligned_cols=28 Identities=36% Similarity=0.475 Sum_probs=24.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
++.-+++++|++|+|||||++.|.|...
T Consensus 346 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 373 (529)
T TIGR02857 346 PPGERVALVGPSGAGKSTLLNLLLGFVD 373 (529)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4567899999999999999999998765
No 436
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.51 E-value=0.00039 Score=60.85 Aligned_cols=44 Identities=23% Similarity=0.256 Sum_probs=30.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEE
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEM 60 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~ 60 (225)
...-+|+++|+.|+|||||++.|.|......+....+.+....+
T Consensus 346 ~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igy 389 (530)
T COG0488 346 DRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGY 389 (530)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEE
Confidence 45678999999999999999999876643333223333433333
No 437
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.50 E-value=0.0024 Score=55.45 Aligned_cols=121 Identities=15% Similarity=0.061 Sum_probs=69.6
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEe-eCCceEEEEeCCCCCCCCCCcHHHHHH
Q 036158 14 SPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTML-KDGQVVNVIDTPGLFDSSADSEFVSKE 92 (225)
Q Consensus 14 ~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~ 92 (225)
....+.+...++|+.++|||.++++++|...... . ..........-.+.. ....-+.|-|.+-........
T Consensus 420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~-~-~~~~~~~~avn~v~~~g~~k~LiL~ei~~~~~~~l~~------ 491 (625)
T KOG1707|consen 420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDN-N-TGTTKPRYAVNSVEVKGQQKYLILREIGEDDQDFLTS------ 491 (625)
T ss_pred cccceeeeEEEEcCCcCchHHHHHHHhccccccc-c-ccCCCCceeeeeeeeccccceEEEeecCccccccccC------
Confidence 3456678899999999999999999999876441 1 111111111112222 133456777776431111111
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158 93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED 152 (225)
Q Consensus 93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~ 152 (225)
..-.+|++++++|...+.+-.. +..+.+....+...|+++|.+|+|+-+.
T Consensus 492 -------ke~~cDv~~~~YDsS~p~sf~~---~a~v~~~~~~~~~~Pc~~va~K~dlDe~ 541 (625)
T KOG1707|consen 492 -------KEAACDVACLVYDSSNPRSFEY---LAEVYNKYFDLYKIPCLMVATKADLDEV 541 (625)
T ss_pred -------ccceeeeEEEecccCCchHHHH---HHHHHHHhhhccCCceEEEeeccccchh
Confidence 1124599999999874433322 2222222222345899999999997543
No 438
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.50 E-value=0.00062 Score=47.41 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 20 RNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
++|+++|..|+|||+|+.++....
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~ 24 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFP 24 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCC
Confidence 379999999999999999985433
No 439
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.50 E-value=0.00039 Score=57.28 Aligned_cols=138 Identities=18% Similarity=0.173 Sum_probs=75.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccc------------cCCCCCcee--EEEEEE-----------------EEe--
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKS------------KAGSSGVTK--TCEMQR-----------------TML-- 65 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~------------~~~~~~~t~--~~~~~~-----------------~~~-- 65 (225)
+.+|+|+|...+|||||+-.|+.....+. .....+.|. ...... .+|
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 57999999999999999988775432110 000000000 000101 111
Q ss_pred ---eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEE
Q 036158 66 ---KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIV 142 (225)
Q Consensus 66 ---~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 142 (225)
....-+++||..|+..+-... + ..+.-.-+|.-.+.+-+...+-.-.++.+-....+ ..|+++
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTT------v---FGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL-----~VPVfv 278 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTT------V---FGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALAL-----HVPVFV 278 (641)
T ss_pred eccccceeEEEEeccchhhhhhee------e---eccccCCCCceEEEecccccceeccHHhhhhhhhh-----cCcEEE
Confidence 011258899999976321000 0 11233445666666655545444455555443333 279999
Q ss_pred EEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158 143 VFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 143 v~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
|+||+|.-+.. -+++.+.. +.++++.-+
T Consensus 279 VVTKIDMCPAN--iLqEtmKl-----l~rllkS~g 306 (641)
T KOG0463|consen 279 VVTKIDMCPAN--ILQETMKL-----LTRLLKSPG 306 (641)
T ss_pred EEEeeccCcHH--HHHHHHHH-----HHHHhcCCC
Confidence 99999976654 55555555 777777733
No 440
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.50 E-value=9.4e-05 Score=55.11 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=23.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
..-.++++|++|+|||||+|.+.|...
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhccC
Confidence 345799999999999999999998764
No 441
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.49 E-value=0.00065 Score=56.91 Aligned_cols=100 Identities=14% Similarity=0.125 Sum_probs=58.8
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158 92 EIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 171 (225)
Q Consensus 92 ~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (225)
.+.+.+......++++++|+|+.+.... +...+.+..+ .+|+++|+||+|+.+.. ...+..... +++
T Consensus 52 ~f~~~l~~~~~~~~~Il~VvD~~d~~~s----~~~~l~~~~~---~~piilV~NK~DLl~k~-~~~~~~~~~-----l~~ 118 (360)
T TIGR03597 52 DFLNLLNSLGDSNALIVYVVDIFDFEGS----LIPELKRFVG---GNPVLLVGNKIDLLPKS-VNLSKIKEW-----MKK 118 (360)
T ss_pred HHHHHHhhcccCCcEEEEEEECcCCCCC----ccHHHHHHhC---CCCEEEEEEchhhCCCC-CCHHHHHHH-----HHH
Confidence 4445555666788999999998643332 2233333333 27999999999987543 112221111 333
Q ss_pred HHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158 172 ILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV 207 (225)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~ 207 (225)
..+..+... ......|+.++.++++|++.|.++
T Consensus 119 ~~k~~g~~~---~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 119 RAKELGLKP---VDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHHcCCCc---CcEEEecCCCCCCHHHHHHHHHHH
Confidence 444444320 112234566779999999999776
No 442
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.48 E-value=9.6e-05 Score=52.87 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=23.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.-.++|+|++|+|||||++.|.|...
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCEEEEEccCCCccccceeeeccccc
Confidence 35689999999999999999998764
No 443
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.48 E-value=0.00064 Score=56.49 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 18 GERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
+.+..+|.|.-|+|||||+|.++..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 3467889999999999999999854
No 444
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.48 E-value=0.00017 Score=52.98 Aligned_cols=83 Identities=14% Similarity=0.177 Sum_probs=46.9
Q ss_pred cEEEEEEeCCCCCCHHHHHHHH-HHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEe
Q 036158 105 HAVLVVFSVRNRFSEEEGAAIH-ILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLF 183 (225)
Q Consensus 105 ~~ii~v~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (225)
|++++|+|+..+.+..+..+.. .+.. ..+|+++|+||+|+.+.. ....++. .+.+......
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~-----~~~p~IiVlNK~Dl~~~~--~~~~~~~--------~~~~~~~~~i--- 62 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKE-----KGKKLILVLNKADLVPKE--VLRKWLA--------YLRHSYPTIP--- 62 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhc-----CCCCEEEEEechhcCCHH--HHHHHHH--------HHHhhCCceE---
Confidence 6899999997555554433332 2221 137999999999985431 2222211 1111112122
Q ss_pred eCCCccccccHHHHHHHHHHHHHHH
Q 036158 184 DNKTKDTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 184 ~~~~~~~~~~~~~v~~l~~~i~~~~ 208 (225)
...|+.++.++++|++.+.+..
T Consensus 63 ---i~vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 63 ---FKISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred ---EEEeccCCcChhhHHHHHHHHh
Confidence 2334556688999999886543
No 445
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.47 E-value=0.0014 Score=50.30 Aligned_cols=23 Identities=35% Similarity=0.289 Sum_probs=20.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhC
Q 036158 19 ERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
.-+++|+|++|+|||||+++|.+
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHH
Confidence 35899999999999999999873
No 446
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.41 E-value=5.6e-05 Score=56.36 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
..-++|.|++|+||||++++|+...
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4568999999999999999999766
No 447
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.40 E-value=0.0014 Score=49.40 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=23.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
+.-.++++|++|+|||||++.|.|...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 445789999999999999999999764
No 448
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.38 E-value=0.00054 Score=61.23 Aligned_cols=28 Identities=36% Similarity=0.517 Sum_probs=24.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.+.-+++++|++|+|||||++.|+|...
T Consensus 365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~~ 392 (592)
T PRK10790 365 PSRGFVALVGHTGSGKSTLASLLMGYYP 392 (592)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 3456789999999999999999998764
No 449
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.34 E-value=0.002 Score=58.48 Aligned_cols=28 Identities=32% Similarity=0.527 Sum_probs=24.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
++.-+|+++|++|||||||++.|+|...
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~ 524 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYK 524 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4456799999999999999999998775
No 450
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.34 E-value=0.0018 Score=38.68 Aligned_cols=43 Identities=23% Similarity=0.293 Sum_probs=28.8
Q ss_pred CccEEEEEEeCCC--CCCHH-HHHHHHHHHHHhcccccccEEEEEecCC
Q 036158 103 GIHAVLVVFSVRN--RFSEE-EGAAIHILESLFGKKISDYMIVVFTGGD 148 (225)
Q Consensus 103 ~~~~ii~v~~~~~--~~~~~-~~~~~~~l~~~~~~~~~~~~~vv~~k~D 148 (225)
-.++++|++|.+. +++-+ +..+++.++..|+. +|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~---~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPN---KPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTT---S-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCC---CCEEEEEeccC
Confidence 4589999999863 34444 45678899999875 89999999998
No 451
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.33 E-value=0.00091 Score=59.59 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=24.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.+.-+++++|++|+|||||++.|.|...
T Consensus 364 ~~G~~~aivG~sGsGKSTL~~ll~g~~~ 391 (574)
T PRK11160 364 KAGEKVALLGRTGCGKSTLLQLLTRAWD 391 (574)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3456899999999999999999998764
No 452
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.33 E-value=0.0021 Score=46.22 Aligned_cols=104 Identities=19% Similarity=0.138 Sum_probs=53.4
Q ss_pred EEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCC
Q 036158 24 LVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDG 103 (225)
Q Consensus 24 v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (225)
.-|..|+||||+--.+...-. .. .....-.+.+...-.+ ...++++|||+..+. ..... ...
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~-~~--~~~~~~vd~D~~~~~~--~yd~VIiD~p~~~~~---------~~~~~----l~~ 66 (139)
T cd02038 5 TSGKGGVGKTNISANLALALA-KL--GKRVLLLDADLGLANL--DYDYIIIDTGAGISD---------NVLDF----FLA 66 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHH-HC--CCcEEEEECCCCCCCC--CCCEEEEECCCCCCH---------HHHHH----HHh
Confidence 457899999999755442210 00 0000000000000001 146899999974421 11122 224
Q ss_pred ccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCC
Q 036158 104 IHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDE 149 (225)
Q Consensus 104 ~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~ 149 (225)
+|.+++|++.+ ..+-.. ...++.+.+.. ...++.+|+|+++.
T Consensus 67 aD~vviv~~~~-~~s~~~~~~~l~~l~~~~---~~~~~~lVvN~~~~ 109 (139)
T cd02038 67 ADEVIVVTTPE-PTSITDAYALIKKLAKQL---RVLNFRVVVNRAES 109 (139)
T ss_pred CCeEEEEcCCC-hhHHHHHHHHHHHHHHhc---CCCCEEEEEeCCCC
Confidence 49999998876 333222 34555554432 23578899999873
No 453
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.00073 Score=57.30 Aligned_cols=101 Identities=14% Similarity=0.170 Sum_probs=56.5
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccc--ccEEEEE
Q 036158 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKIS--DYMIVVF 144 (225)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~vv~ 144 (225)
++..++|+||+|-- .++..++..+...+.. ..+|.|++|-.+- ...+...-+..+.+.+..... .---+++
T Consensus 465 ~gfDVvLiDTAGR~---~~~~~lm~~l~k~~~~--~~pd~i~~vgeal--vg~dsv~q~~~fn~al~~~~~~r~id~~~l 537 (587)
T KOG0781|consen 465 QGFDVVLIDTAGRM---HNNAPLMTSLAKLIKV--NKPDLILFVGEAL--VGNDSVDQLKKFNRALADHSTPRLIDGILL 537 (587)
T ss_pred cCCCEEEEeccccc---cCChhHHHHHHHHHhc--CCCceEEEehhhh--hCcHHHHHHHHHHHHHhcCCCccccceEEE
Confidence 45679999999953 4455566666666543 4889999996652 112222334444444433211 1235789
Q ss_pred ecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158 145 TGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK 186 (225)
Q Consensus 145 ~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (225)
||.|... +.+.. .-.+.=..+.+++++.--
T Consensus 538 tk~dtv~-------d~vg~-----~~~m~y~~~~pi~fvg~g 567 (587)
T KOG0781|consen 538 TKFDTVD-------DKVGA-----AVSMVYITGKPILFVGVG 567 (587)
T ss_pred Eeccchh-------hHHHH-----HhhheeecCCceEEEecC
Confidence 9999543 33333 333333445666665543
No 454
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.31 E-value=0.0076 Score=52.83 Aligned_cols=82 Identities=13% Similarity=0.167 Sum_probs=46.1
Q ss_pred cEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcc-cHHHHhhhcCCchHHHHHHHcCCcEEEe
Q 036158 105 HAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDE-TLEDYLGRECPKPLKEILQLCDNRCVLF 183 (225)
Q Consensus 105 ~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (225)
--+|||-|....+......+-+.|.++.......|++++++-+|....... ....+..+ ...-.+++..++.....|
T Consensus 133 ~kvILVEDlPN~~~~~~~~f~~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~--~L~~~~il~~~~i~~I~F 210 (519)
T PF03215_consen 133 KKVILVEDLPNVFHRDTSRFREALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAE--RLFPKEILNHPGITRIKF 210 (519)
T ss_pred ceEEEeeccccccchhHHHHHHHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhh--hccCHHHHhCCCceEEEe
Confidence 457777777644444445566667766654322399999996654332200 01011000 112356777888888889
Q ss_pred eCCCc
Q 036158 184 DNKTK 188 (225)
Q Consensus 184 ~~~~~ 188 (225)
++..+
T Consensus 211 NpIa~ 215 (519)
T PF03215_consen 211 NPIAP 215 (519)
T ss_pred cCCCH
Confidence 88766
No 455
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.30 E-value=0.00021 Score=49.96 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q 036158 21 NLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~ 41 (225)
+|+|.|++||||||+.+.|..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999974
No 456
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.28 E-value=0.00083 Score=61.22 Aligned_cols=28 Identities=29% Similarity=0.515 Sum_probs=24.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.+.-+|+++|++|+|||||++.|.|...
T Consensus 489 ~~G~~iaIvG~sGsGKSTLlklL~gl~~ 516 (694)
T TIGR03375 489 RPGEKVAIIGRIGSGKSTLLKLLLGLYQ 516 (694)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3456799999999999999999998764
No 457
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.27 E-value=0.00098 Score=59.30 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=25.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAF 45 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~ 45 (225)
.+.-+++++|++||||||++|.|.+....
T Consensus 353 ~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~ 381 (567)
T COG1132 353 EPGEKVAIVGPSGSGKSTLIKLLLRLYDP 381 (567)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 45678999999999999999999987643
No 458
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.26 E-value=0.0064 Score=46.33 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=23.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
.+.-.++|+|++|+|||||++.|.|..
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 445679999999999999999999875
No 459
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.25 E-value=0.00031 Score=54.19 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=23.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
+.-.++|+|++|+|||||++.|.|...
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 446789999999999999999998753
No 460
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.24 E-value=0.00027 Score=54.57 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=22.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 21 NLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.++++|++|+|||||++.|.|...
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCC
Confidence 899999999999999999998653
No 461
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.23 E-value=0.00026 Score=55.60 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=23.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.+.-.++|+|++|+|||||++.|.|...
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3445789999999999999999998753
No 462
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.22 E-value=0.0027 Score=46.54 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=22.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
+.-.++|+|++|+|||||++.|.|..
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678999999999999999999865
No 463
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.22 E-value=0.00028 Score=53.59 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=23.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
+.-.++|+|++|+|||||++.|.|...
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345689999999999999999998753
No 464
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.22 E-value=0.00027 Score=53.52 Aligned_cols=26 Identities=31% Similarity=0.581 Sum_probs=22.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
....++++|++|+|||||+++|++.-
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 35679999999999999999999764
No 465
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.22 E-value=0.00049 Score=53.04 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=24.2
Q ss_pred CCCCCCCCCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 10 SKPTSPSNGERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 10 ~~~~~~~~~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
|.+..+. ....|+|+|++|||||||++.|...
T Consensus 5 ~~~~~~~-~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 5 WLFNKPA-KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred cccCCCC-CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3334443 4567888999999999999999754
No 466
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.21 E-value=0.00029 Score=54.67 Aligned_cols=28 Identities=29% Similarity=0.397 Sum_probs=23.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.+.-.++|+|++|+|||||++.|.|...
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 3445789999999999999999998753
No 467
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.20 E-value=0.00027 Score=53.32 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=22.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
.+.-.++++|++|||||||+|.+.|.-
T Consensus 29 a~ge~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 29 ASGELVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCc
Confidence 334568889999999999999998865
No 468
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.20 E-value=0.0003 Score=54.70 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=23.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
+.-.++|+|++|+|||||++.|.|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44678999999999999999999875
No 469
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.19 E-value=0.00032 Score=54.08 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
++...|+|+|++|||||||++.|.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999864
No 470
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=97.19 E-value=0.00052 Score=56.10 Aligned_cols=26 Identities=31% Similarity=0.509 Sum_probs=23.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
..+|++.|-||||||||+|+|++.-.
T Consensus 173 r~NILisGGTGSGKTTlLNal~~~i~ 198 (355)
T COG4962 173 RCNILISGGTGSGKTTLLNALSGFID 198 (355)
T ss_pred ceeEEEeCCCCCCHHHHHHHHHhcCC
Confidence 36899999999999999999997653
No 471
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.18 E-value=0.0004 Score=53.73 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=23.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.+.-.++|+|++|+|||||++.|.|...
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3445799999999999999999998753
No 472
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.18 E-value=0.00039 Score=53.44 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=23.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
+.-.++|+|++|+|||||++.|.|...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 445799999999999999999998753
No 473
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.18 E-value=0.00042 Score=53.70 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=23.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.-.++|+|++|+|||||++.|.|...
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 45789999999999999999998753
No 474
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.17 E-value=0.0026 Score=49.86 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=23.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
..+..++++.|..|+||||++++++...
T Consensus 49 G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 49 GLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred CCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999999544
No 475
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.17 E-value=0.01 Score=45.44 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 036158 20 RNLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~ 40 (225)
.+++|.|++|+|||||++.|.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 469999999999999999977
No 476
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.17 E-value=0.00034 Score=54.42 Aligned_cols=27 Identities=33% Similarity=0.405 Sum_probs=23.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
+.-.++|+|++|+|||||++.|.|...
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345689999999999999999998753
No 477
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.17 E-value=0.019 Score=49.88 Aligned_cols=91 Identities=13% Similarity=0.118 Sum_probs=49.3
Q ss_pred cEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEee
Q 036158 105 HAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFD 184 (225)
Q Consensus 105 ~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (225)
-.+|||-|....+-.++.+.++.+...+-.....|+++++|-+-..... ..+ ..+...+-+.++...+.|+
T Consensus 195 ~~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~n----nq~-----rlf~~d~q~~~ri~~IsFN 265 (634)
T KOG1970|consen 195 KKLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLSNGNN----NQD-----RLFPKDIQEEPRISNISFN 265 (634)
T ss_pred ceEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcEEEEEeccccCCCc----chh-----hhchhhhhhccCcceEeec
Confidence 3468887776433332444444333344444557899999865533221 111 2223444477888888888
Q ss_pred CCCccccccHHHHHHHHHHHHHHHHH
Q 036158 185 NKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 185 ~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
+..+ .-+...+..|......
T Consensus 266 PIa~------T~MKK~L~ric~~e~~ 285 (634)
T KOG1970|consen 266 PIAP------TIMKKFLKRICRIEAN 285 (634)
T ss_pred CCcH------HHHHHHHHHHHHHhcc
Confidence 8765 3455555555544333
No 478
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.17 E-value=0.00044 Score=47.26 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=20.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHh
Q 036158 18 GERNLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~ 40 (225)
+.-.++++|++|+|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 34668999999999999999986
No 479
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.16 E-value=0.00039 Score=55.03 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=22.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
+.-.++++|++|||||||+++|.|.-.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 346688999999999999999998543
No 480
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.15 E-value=0.00036 Score=53.62 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=23.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
+.-.++|+|++|+|||||++.|.|...
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345689999999999999999998753
No 481
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.15 E-value=0.0004 Score=53.81 Aligned_cols=28 Identities=36% Similarity=0.495 Sum_probs=23.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.+.-.++|+|++|+|||||++.|.|...
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3446789999999999999999998753
No 482
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.15 E-value=0.00036 Score=53.95 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=23.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
+.-.++|+|++|+|||||++.|.|...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 445699999999999999999998753
No 483
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.15 E-value=0.0034 Score=41.47 Aligned_cols=68 Identities=22% Similarity=0.245 Sum_probs=40.9
Q ss_pred EEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcC
Q 036158 22 LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTK 101 (225)
Q Consensus 22 i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~ 101 (225)
+++.|..|+||||+...+...-.. . +. .. .-+ + .+.++|+|+..+..... .....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~---~---g~----~v--~~~-~--d~iivD~~~~~~~~~~~----------~~~~~ 56 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK---R---GK----RV--LLI-D--DYVLIDTPPGLGLLVLL----------CLLAL 56 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---C---CC----eE--EEE-C--CEEEEeCCCCccchhhh----------hhhhh
Confidence 678899999999999887643311 0 00 00 111 1 57899999865431000 01233
Q ss_pred CCccEEEEEEeCC
Q 036158 102 DGIHAVLVVFSVR 114 (225)
Q Consensus 102 ~~~~~ii~v~~~~ 114 (225)
..+|.++++++.+
T Consensus 57 ~~~~~vi~v~~~~ 69 (99)
T cd01983 57 LAADLVIIVTTPE 69 (99)
T ss_pred hhCCEEEEecCCc
Confidence 3568888888776
No 484
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.15 E-value=0.00037 Score=53.78 Aligned_cols=27 Identities=33% Similarity=0.422 Sum_probs=23.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
+.-.++|+|++|+|||||++.|.|...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 445689999999999999999998753
No 485
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.14 E-value=0.00037 Score=53.90 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=23.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
+.-.++|+|++|+|||||++.|.|...
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 445789999999999999999998753
No 486
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.14 E-value=0.0036 Score=44.48 Aligned_cols=25 Identities=36% Similarity=0.590 Sum_probs=21.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
...++++|++|+|||++++.+...-
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998544
No 487
>PRK07261 topology modulation protein; Provisional
Probab=97.13 E-value=0.00037 Score=52.12 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCC
Q 036158 20 RNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
.+|+|+|.+|+|||||...|...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999988643
No 488
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.13 E-value=0.0004 Score=52.60 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCc
Q 036158 21 NLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
.|+|+|++|+||||+++.|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999997654
No 489
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.13 E-value=0.00055 Score=51.90 Aligned_cols=26 Identities=19% Similarity=0.428 Sum_probs=22.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
+..-|+|+|++|+|||||++.|+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 44679999999999999999998764
No 490
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.12 E-value=0.00039 Score=54.92 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=23.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.+.-.++|+|++|+|||||++.|.|...
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 3445799999999999999999998753
No 491
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.12 E-value=0.00049 Score=53.50 Aligned_cols=28 Identities=29% Similarity=0.501 Sum_probs=24.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.+.-.++|+|++|+|||||++.|.|...
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3456799999999999999999998753
No 492
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.11 E-value=0.00051 Score=53.89 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=24.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.+.-.++|+|++|+|||||++.|.|...
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3456799999999999999999998764
No 493
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.11 E-value=0.00051 Score=53.13 Aligned_cols=28 Identities=36% Similarity=0.482 Sum_probs=23.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.+.-.++|+|++|+|||||++.|.|...
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 3445799999999999999999998753
No 494
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.11 E-value=0.00051 Score=53.83 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=23.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
+.-.++|+|++|+|||||++.|.|...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 445799999999999999999998753
No 495
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.11 E-value=0.00043 Score=53.40 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=22.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
.+...|+|.|++|||||||.+.|.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999998864
No 496
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.11 E-value=0.00039 Score=53.87 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=21.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
.=.|+++|++|+|||||+++|.+.-
T Consensus 30 GE~VaiIG~SGaGKSTLLR~lngl~ 54 (258)
T COG3638 30 GEMVAIIGPSGAGKSTLLRSLNGLV 54 (258)
T ss_pred CcEEEEECCCCCcHHHHHHHHhccc
Confidence 3468999999999999999998843
No 497
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.10 E-value=0.00053 Score=53.52 Aligned_cols=28 Identities=43% Similarity=0.583 Sum_probs=24.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.+.-.++|+|++|+|||||++.|.|...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 56 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3456799999999999999999998753
No 498
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.10 E-value=0.00042 Score=57.48 Aligned_cols=26 Identities=27% Similarity=0.609 Sum_probs=23.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
...+|+|.|++|||||||+|+|++.-
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHccc
Confidence 45889999999999999999999754
No 499
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.10 E-value=0.00044 Score=52.87 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=21.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
.+.-..+++|++|||||||+++|-+-.
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHhhc
Confidence 345678999999999999998876443
No 500
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.10 E-value=0.0025 Score=61.22 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=24.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAF 45 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~ 45 (225)
..-.++|+|++|+|||||+.+|+|+-..
T Consensus 546 ~G~lvaVvG~vGsGKSSLL~AiLGEm~~ 573 (1381)
T KOG0054|consen 546 KGQLVAVVGPVGSGKSSLLSAILGEMPK 573 (1381)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCccc
Confidence 3456899999999999999999998653
Done!