Query 036158
Match_columns 225
No_of_seqs 133 out of 1551
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 17:02:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036158.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036158hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lxw_A GTPase IMAP family memb 100.0 1.5E-33 5.2E-38 222.3 19.7 205 15-225 17-223 (247)
2 3lxx_A GTPase IMAP family memb 100.0 1.4E-32 4.8E-37 215.8 20.8 204 16-225 26-229 (239)
3 2xtp_A GTPase IMAP family memb 100.0 3.2E-28 1.1E-32 193.1 23.7 204 15-224 18-222 (260)
4 3def_A T7I23.11 protein; chlor 99.9 1.7E-22 5.7E-27 160.5 16.2 191 17-213 34-246 (262)
5 1h65_A Chloroplast outer envel 99.9 1E-21 3.5E-26 156.6 19.0 200 17-221 37-257 (270)
6 4dhe_A Probable GTP-binding pr 99.9 5.8E-22 2E-26 153.2 16.5 181 16-212 26-213 (223)
7 3iev_A GTP-binding protein ERA 99.9 4.4E-22 1.5E-26 161.5 13.1 178 14-212 5-184 (308)
8 1wf3_A GTP-binding protein; GT 99.9 1.4E-21 4.8E-26 157.9 14.6 168 18-211 6-174 (301)
9 3pqc_A Probable GTP-binding pr 99.9 1.7E-20 5.7E-25 141.6 18.3 173 15-210 19-194 (195)
10 1svi_A GTP-binding protein YSX 99.9 1.5E-20 5.3E-25 142.1 17.8 172 16-209 20-194 (195)
11 2lkc_A Translation initiation 99.8 6.3E-20 2.2E-24 136.6 15.5 168 17-212 6-173 (178)
12 2qu8_A Putative nucleolar GTP- 99.8 2.8E-19 9.7E-24 138.8 19.5 181 16-211 26-206 (228)
13 3t5d_A Septin-7; GTP-binding p 99.8 2.4E-20 8.2E-25 148.9 12.8 173 18-209 7-203 (274)
14 1mky_A Probable GTP-binding pr 99.8 1.5E-20 5.3E-25 159.4 11.8 167 20-212 2-168 (439)
15 2dyk_A GTP-binding protein; GT 99.8 7.2E-20 2.5E-24 134.0 13.0 158 20-207 2-159 (161)
16 2gf9_A RAS-related protein RAB 99.8 3.1E-19 1.1E-23 134.4 16.5 170 12-211 15-186 (189)
17 1lnz_A SPO0B-associated GTP-bi 99.8 7.9E-21 2.7E-25 155.7 7.5 176 20-218 159-339 (342)
18 4dcu_A GTP-binding protein ENG 99.8 1.9E-20 6.4E-25 159.6 9.6 183 16-218 192-377 (456)
19 2hjg_A GTP-binding protein ENG 99.8 1.7E-20 5.8E-25 159.1 8.8 182 17-217 173-356 (436)
20 3tw8_B RAS-related protein RAB 99.8 1.6E-18 5.6E-23 129.0 18.4 165 16-211 6-172 (181)
21 4bas_A ADP-ribosylation factor 99.8 1.6E-18 5.5E-23 131.2 18.1 173 13-213 11-192 (199)
22 1kao_A RAP2A; GTP-binding prot 99.8 1.8E-18 6E-23 127.0 17.7 162 18-210 2-166 (167)
23 3i8s_A Ferrous iron transport 99.8 1.8E-19 6.1E-24 143.9 12.8 167 18-211 2-170 (274)
24 2gj8_A MNME, tRNA modification 99.8 9.7E-20 3.3E-24 135.5 10.5 164 18-210 3-166 (172)
25 4dcu_A GTP-binding protein ENG 99.8 9.9E-21 3.4E-25 161.4 5.7 169 14-211 18-186 (456)
26 1z08_A RAS-related protein RAB 99.8 1E-18 3.5E-23 128.9 15.6 163 17-210 4-169 (170)
27 3oes_A GTPase rhebl1; small GT 99.8 1.7E-18 5.9E-23 131.7 17.2 169 14-213 19-190 (201)
28 2a9k_A RAS-related protein RAL 99.8 1.4E-18 4.9E-23 130.0 16.5 165 16-211 15-182 (187)
29 1upt_A ARL1, ADP-ribosylation 99.8 1E-18 3.6E-23 129.0 15.3 164 16-211 4-170 (171)
30 3tkl_A RAS-related protein RAB 99.8 3.1E-18 1.1E-22 129.4 18.0 166 17-213 14-182 (196)
31 3iby_A Ferrous iron transport 99.8 3E-19 1E-23 141.1 12.6 161 20-207 2-164 (256)
32 3t5g_A GTP-binding protein RHE 99.8 3.6E-18 1.2E-22 127.5 17.6 167 17-214 4-173 (181)
33 2hjg_A GTP-binding protein ENG 99.8 4.3E-20 1.5E-24 156.6 7.7 164 19-211 3-166 (436)
34 1z0f_A RAB14, member RAS oncog 99.8 5.3E-19 1.8E-23 131.4 12.8 164 16-210 12-178 (179)
35 2g6b_A RAS-related protein RAB 99.8 3.3E-18 1.1E-22 127.4 17.2 166 17-212 8-176 (180)
36 2efe_B Small GTP-binding prote 99.8 5.7E-19 2E-23 131.7 12.7 165 16-210 9-175 (181)
37 2fg5_A RAB-22B, RAS-related pr 99.8 3.1E-19 1.1E-23 134.9 11.3 167 16-211 20-187 (192)
38 1z0j_A RAB-22, RAS-related pro 99.8 3.8E-19 1.3E-23 131.2 11.3 163 17-209 4-168 (170)
39 1u8z_A RAS-related protein RAL 99.8 3.1E-18 1.1E-22 125.7 16.1 163 17-210 2-167 (168)
40 3clv_A RAB5 protein, putative; 99.8 5.2E-18 1.8E-22 128.6 17.8 161 17-211 5-205 (208)
41 1r2q_A RAS-related protein RAB 99.8 4.1E-19 1.4E-23 130.9 11.1 162 18-209 5-168 (170)
42 2oil_A CATX-8, RAS-related pro 99.8 1.7E-18 5.7E-23 130.8 14.7 165 17-211 23-189 (193)
43 1ksh_A ARF-like protein 2; sma 99.8 5.1E-18 1.7E-22 127.3 17.3 163 17-211 16-181 (186)
44 2a5j_A RAS-related protein RAB 99.8 1.9E-18 6.6E-23 130.3 15.0 165 16-211 18-185 (191)
45 4dsu_A GTPase KRAS, isoform 2B 99.8 6.3E-18 2.2E-22 126.8 17.5 162 18-211 3-167 (189)
46 1zd9_A ADP-ribosylation factor 99.8 1.5E-18 5.3E-23 130.6 14.1 165 16-211 19-186 (188)
47 2wji_A Ferrous iron transport 99.8 1.8E-18 6.3E-23 127.5 14.3 162 18-208 2-163 (165)
48 1zbd_A Rabphilin-3A; G protein 99.8 2.6E-18 8.9E-23 130.7 15.5 163 18-210 7-171 (203)
49 3k53_A Ferrous iron transport 99.8 1.9E-18 6.5E-23 137.7 15.3 168 18-213 2-169 (271)
50 3a1s_A Iron(II) transport prot 99.8 3.3E-18 1.1E-22 135.3 16.3 165 17-210 3-167 (258)
51 2bcg_Y Protein YP2, GTP-bindin 99.8 6.5E-18 2.2E-22 128.8 17.4 164 17-211 6-172 (206)
52 2p5s_A RAS and EF-hand domain 99.8 2.6E-19 8.9E-24 136.1 9.4 170 16-210 25-197 (199)
53 1g16_A RAS-related protein SEC 99.8 1.5E-18 5.2E-23 127.9 13.2 162 18-211 2-166 (170)
54 2h57_A ADP-ribosylation factor 99.8 1.4E-18 4.7E-23 131.0 13.2 164 16-211 18-188 (190)
55 2bme_A RAB4A, RAS-related prot 99.8 7.4E-18 2.5E-22 126.2 17.2 164 17-211 8-174 (186)
56 3cph_A RAS-related protein SEC 99.8 2.2E-18 7.6E-23 131.9 14.6 165 15-211 16-183 (213)
57 1ek0_A Protein (GTP-binding pr 99.8 3.4E-19 1.2E-23 131.3 9.4 163 18-208 2-167 (170)
58 2bov_A RAla, RAS-related prote 99.8 9.2E-18 3.1E-22 127.7 17.6 165 15-210 10-177 (206)
59 2il1_A RAB12; G-protein, GDP, 99.8 7.7E-19 2.6E-23 132.7 11.5 164 16-210 23-190 (192)
60 1x3s_A RAS-related protein RAB 99.8 1.1E-18 3.8E-23 131.7 12.3 166 16-212 12-180 (195)
61 3bc1_A RAS-related protein RAB 99.8 1.1E-17 3.7E-22 125.9 17.6 166 17-211 9-186 (195)
62 2nzj_A GTP-binding protein REM 99.8 5.7E-18 2E-22 125.5 15.8 166 17-211 2-170 (175)
63 3con_A GTPase NRAS; structural 99.8 9.6E-18 3.3E-22 126.2 17.3 166 15-212 17-185 (190)
64 2q3h_A RAS homolog gene family 99.8 1E-17 3.5E-22 127.2 17.6 186 1-211 2-196 (201)
65 3gee_A MNME, tRNA modification 99.8 6.1E-19 2.1E-23 150.4 11.7 164 19-209 233-397 (476)
66 3kkq_A RAS-related protein M-R 99.8 1.6E-17 5.5E-22 124.2 18.1 167 13-210 12-182 (183)
67 1mky_A Probable GTP-binding pr 99.8 8.4E-19 2.9E-23 148.8 12.3 186 17-219 178-364 (439)
68 1moz_A ARL1, ADP-ribosylation 99.8 1.4E-18 4.9E-23 129.8 11.8 161 17-211 16-181 (183)
69 3reg_A RHO-like small GTPase; 99.8 4.8E-18 1.6E-22 128.4 14.7 166 16-212 20-190 (194)
70 2hup_A RAS-related protein RAB 99.8 5.2E-18 1.8E-22 129.2 15.0 166 17-213 27-196 (201)
71 3q72_A GTP-binding protein RAD 99.8 6.4E-18 2.2E-22 124.2 14.9 162 19-211 2-165 (166)
72 2erx_A GTP-binding protein DI- 99.8 2.5E-18 8.4E-23 126.9 12.6 164 18-211 2-168 (172)
73 1z2a_A RAS-related protein RAB 99.8 4.1E-18 1.4E-22 125.3 13.8 160 18-209 4-166 (168)
74 3qq5_A Small GTP-binding prote 99.8 2.3E-19 8E-24 150.7 7.8 169 16-213 31-199 (423)
75 4djt_A GTP-binding nuclear pro 99.8 1E-18 3.6E-23 134.5 10.8 172 16-217 8-182 (218)
76 3t1o_A Gliding protein MGLA; G 99.8 5.3E-18 1.8E-22 128.0 14.2 168 16-211 11-193 (198)
77 2fh5_B SR-beta, signal recogni 99.8 6.2E-18 2.1E-22 129.7 14.8 120 17-153 5-131 (214)
78 1wms_A RAB-9, RAB9, RAS-relate 99.8 1.7E-17 5.7E-22 123.2 16.5 165 17-211 5-175 (177)
79 1ega_A Protein (GTP-binding pr 99.8 2.1E-18 7.1E-23 139.4 12.4 169 18-211 7-176 (301)
80 2fu5_C RAS-related protein RAB 99.8 3.1E-18 1.1E-22 128.1 12.5 164 17-211 6-172 (183)
81 3dz8_A RAS-related protein RAB 99.8 1.6E-18 5.5E-23 130.8 11.0 167 17-212 21-188 (191)
82 2x77_A ADP-ribosylation factor 99.8 5.2E-18 1.8E-22 127.6 13.7 164 17-212 20-186 (189)
83 2hxs_A RAB-26, RAS-related pro 99.8 6.2E-18 2.1E-22 125.7 13.9 168 16-212 3-175 (178)
84 1z06_A RAS-related protein RAB 99.8 4.5E-18 1.5E-22 128.0 13.2 165 16-210 17-188 (189)
85 2f7s_A C25KG, RAS-related prot 99.8 1.1E-17 3.8E-22 128.6 15.6 162 17-210 23-199 (217)
86 2y8e_A RAB-protein 6, GH09086P 99.8 3E-18 1E-22 127.3 12.0 162 17-209 12-176 (179)
87 3q85_A GTP-binding protein REM 99.8 3.2E-18 1.1E-22 126.2 12.0 164 19-211 2-168 (169)
88 2wjg_A FEOB, ferrous iron tran 99.8 1.3E-17 4.5E-22 125.1 15.3 169 16-213 4-172 (188)
89 2ce2_X GTPase HRAS; signaling 99.8 8.3E-17 2.8E-21 117.7 19.3 161 18-210 2-165 (166)
90 1r8s_A ADP-ribosylation factor 99.8 3.5E-18 1.2E-22 125.4 11.9 160 20-211 1-163 (164)
91 2ew1_A RAS-related protein RAB 99.8 2.5E-17 8.5E-22 125.5 16.7 164 17-211 24-190 (201)
92 4gzl_A RAS-related C3 botulinu 99.8 2.1E-18 7.3E-23 131.6 10.7 167 16-207 27-202 (204)
93 2fn4_A P23, RAS-related protei 99.8 6.2E-17 2.1E-21 120.4 18.4 168 15-213 5-175 (181)
94 2j1l_A RHO-related GTP-binding 99.8 2E-17 6.7E-22 127.2 16.0 171 17-213 32-212 (214)
95 2h17_A ADP-ribosylation factor 99.8 2.6E-18 8.8E-23 128.6 10.6 159 16-206 18-179 (181)
96 4dkx_A RAS-related protein RAB 99.8 4.4E-18 1.5E-22 131.1 12.1 163 17-210 11-176 (216)
97 2o52_A RAS-related protein RAB 99.8 1E-17 3.5E-22 127.4 14.0 164 17-211 23-189 (200)
98 1c1y_A RAS-related protein RAP 99.8 8E-18 2.7E-22 123.6 12.9 161 18-208 2-165 (167)
99 2yc2_C IFT27, small RAB-relate 99.8 5.9E-18 2E-22 128.9 12.4 169 17-211 18-193 (208)
100 3llu_A RAS-related GTP-binding 99.8 1.4E-17 4.8E-22 126.2 14.4 176 14-207 15-194 (196)
101 1ky3_A GTP-binding protein YPT 99.8 1.5E-17 5.1E-22 123.9 14.1 169 16-211 5-179 (182)
102 2gf0_A GTP-binding protein DI- 99.8 6.4E-18 2.2E-22 127.9 12.2 165 17-212 6-173 (199)
103 1zj6_A ADP-ribosylation factor 99.8 1.3E-17 4.6E-22 125.2 13.4 162 17-212 14-180 (187)
104 2atx_A Small GTP binding prote 99.8 3.2E-17 1.1E-21 123.8 15.4 167 17-209 16-192 (194)
105 3gj0_A GTP-binding nuclear pro 99.8 2.7E-18 9.2E-23 132.5 9.6 166 15-212 11-177 (221)
106 1wb1_A Translation elongation 99.8 8.7E-18 3E-22 143.8 13.7 168 17-211 17-190 (482)
107 3geh_A MNME, tRNA modification 99.8 5.9E-19 2E-23 150.0 6.3 164 18-212 223-386 (462)
108 3cpj_B GTP-binding protein YPT 99.8 2.7E-17 9.2E-22 127.2 15.2 164 17-211 11-177 (223)
109 1fzq_A ADP-ribosylation factor 99.8 3.3E-17 1.1E-21 122.6 15.1 162 17-210 14-178 (181)
110 3q3j_B RHO-related GTP-binding 99.8 5E-17 1.7E-21 124.9 16.3 173 16-212 24-205 (214)
111 1vg8_A RAS-related protein RAB 99.8 3.9E-17 1.4E-21 124.4 15.4 166 16-211 5-176 (207)
112 3j2k_7 ERF3, eukaryotic polype 99.7 1.6E-17 5.4E-22 140.8 14.2 168 14-202 12-217 (439)
113 3l0i_B RAS-related protein RAB 99.7 5.8E-19 2E-23 134.1 4.8 164 17-211 31-197 (199)
114 2gco_A H9, RHO-related GTP-bin 99.7 4.7E-17 1.6E-21 123.7 15.1 167 17-209 23-199 (201)
115 3b1v_A Ferrous iron uptake tra 99.7 3.2E-17 1.1E-21 130.5 14.7 163 19-211 3-165 (272)
116 1mh1_A RAC1; GTP-binding, GTPa 99.7 3.7E-17 1.3E-21 122.2 14.0 170 17-211 3-181 (186)
117 2atv_A RERG, RAS-like estrogen 99.7 2.7E-17 9.2E-22 124.5 13.2 164 16-211 25-192 (196)
118 2b6h_A ADP-ribosylation factor 99.7 9.4E-17 3.2E-21 121.3 16.1 161 17-209 27-190 (192)
119 2fv8_A H6, RHO-related GTP-bin 99.7 8.2E-17 2.8E-21 123.0 15.8 169 17-211 23-201 (207)
120 1xzp_A Probable tRNA modificat 99.7 5.4E-18 1.9E-22 144.7 10.0 160 19-209 243-404 (482)
121 2qtf_A Protein HFLX, GTP-bindi 99.7 1E-16 3.4E-21 132.6 17.2 174 20-213 180-357 (364)
122 1jwy_B Dynamin A GTPase domain 99.7 1.1E-17 3.9E-22 135.8 11.4 178 17-211 22-263 (315)
123 1m7b_A RND3/RHOE small GTP-bin 99.7 5.7E-17 1.9E-21 121.5 14.4 169 17-209 5-182 (184)
124 3cbq_A GTP-binding protein REM 99.7 5.9E-17 2E-21 122.8 14.1 170 15-213 19-191 (195)
125 1m2o_B GTP-binding protein SAR 99.7 6.4E-17 2.2E-21 122.0 14.2 163 17-206 21-188 (190)
126 3c5c_A RAS-like protein 12; GD 99.7 1.4E-16 4.8E-21 119.8 16.0 164 16-210 18-186 (187)
127 3tr5_A RF-3, peptide chain rel 99.7 1E-17 3.4E-22 144.6 10.3 119 17-152 11-149 (528)
128 3ihw_A Centg3; RAS, centaurin, 99.7 7.5E-17 2.6E-21 121.1 13.9 164 14-212 15-182 (184)
129 2cxx_A Probable GTP-binding pr 99.7 1.9E-17 6.5E-22 124.3 10.2 172 20-213 2-187 (190)
130 2e87_A Hypothetical protein PH 99.7 4.1E-16 1.4E-20 128.9 18.6 170 17-212 165-338 (357)
131 3r7w_A Gtpase1, GTP-binding pr 99.7 1.3E-16 4.6E-21 129.2 15.3 126 18-151 2-129 (307)
132 1d2e_A Elongation factor TU (E 99.7 1.3E-16 4.3E-21 133.7 15.2 167 18-211 2-196 (397)
133 2g3y_A GTP-binding protein GEM 99.7 7.6E-16 2.6E-20 118.2 18.3 167 17-211 35-204 (211)
134 1gwn_A RHO-related GTP-binding 99.7 1.3E-16 4.4E-21 121.9 13.9 169 17-209 26-203 (205)
135 3o47_A ADP-ribosylation factor 99.7 1.5E-16 5E-21 130.1 15.1 160 18-211 164-328 (329)
136 1zun_B Sulfate adenylate trans 99.7 5.7E-17 2E-21 137.3 13.0 160 16-199 21-213 (434)
137 2c78_A Elongation factor TU-A; 99.7 2.9E-17 9.8E-22 138.0 10.9 170 15-211 7-213 (405)
138 1s0u_A EIF-2-gamma, translatio 99.7 3.3E-16 1.1E-20 131.7 17.2 170 16-211 5-199 (408)
139 3p26_A Elongation factor 1 alp 99.7 7.4E-17 2.5E-21 138.3 13.5 141 17-178 31-207 (483)
140 2elf_A Protein translation elo 99.7 8.1E-17 2.8E-21 133.4 13.2 152 21-210 23-180 (370)
141 1f6b_A SAR1; gtpases, N-termin 99.7 9E-17 3.1E-21 122.0 12.4 157 17-206 23-195 (198)
142 2j0v_A RAC-like GTP-binding pr 99.7 1.4E-16 4.9E-21 121.9 13.7 170 17-212 7-182 (212)
143 2iwr_A Centaurin gamma 1; ANK 99.7 1E-16 3.5E-21 119.2 11.8 158 17-210 5-169 (178)
144 1kk1_A EIF2gamma; initiation o 99.7 1.4E-16 4.9E-21 133.9 13.9 170 16-211 7-201 (410)
145 3lvq_E ARF-GAP with SH3 domain 99.7 1.1E-16 3.7E-21 137.9 13.3 172 17-219 320-493 (497)
146 1pui_A ENGB, probable GTP-bind 99.7 6.1E-16 2.1E-20 118.1 15.9 175 16-210 23-199 (210)
147 3bwd_D RAC-like GTP-binding pr 99.7 6.2E-17 2.1E-21 120.6 10.1 167 17-208 6-179 (182)
148 2aka_B Dynamin-1; fusion prote 99.7 1.1E-16 3.9E-21 128.8 12.0 173 17-206 24-249 (299)
149 3sjy_A Translation initiation 99.7 2.3E-16 7.8E-21 132.4 13.9 171 16-212 5-194 (403)
150 3izy_P Translation initiation 99.7 1.7E-18 5.7E-23 149.1 0.2 163 18-210 3-168 (537)
151 3t34_A Dynamin-related protein 99.7 2.2E-16 7.6E-21 130.6 11.8 133 18-153 33-219 (360)
152 1g7s_A Translation initiation 99.7 5.7E-16 1.9E-20 135.3 14.3 116 18-151 4-136 (594)
153 2qag_A Septin-2, protein NEDD5 99.7 2.3E-16 8E-21 130.4 11.1 151 18-181 36-211 (361)
154 2zej_A Dardarin, leucine-rich 99.7 3.8E-16 1.3E-20 117.1 10.7 169 19-210 2-178 (184)
155 2ged_A SR-beta, signal recogni 99.7 3.1E-16 1.1E-20 118.1 10.0 129 17-163 46-180 (193)
156 4a9a_A Ribosome-interacting GT 99.7 4.9E-16 1.7E-20 128.3 11.9 126 16-150 69-195 (376)
157 3th5_A RAS-related C3 botulinu 99.5 5.8E-18 2E-22 129.0 0.0 168 17-207 28-202 (204)
158 3zvr_A Dynamin-1; hydrolase, D 99.7 7.7E-16 2.6E-20 136.8 13.1 171 17-206 49-274 (772)
159 1udx_A The GTP-binding protein 99.7 3.8E-15 1.3E-19 124.8 16.5 170 20-213 158-328 (416)
160 3cb4_D GTP-binding protein LEP 99.7 1.3E-15 4.4E-20 133.0 13.7 166 18-213 3-185 (599)
161 2ywe_A GTP-binding protein LEP 99.6 1E-15 3.4E-20 133.5 12.1 166 17-212 4-186 (600)
162 2cjw_A GTP-binding protein GEM 99.6 3.3E-15 1.1E-19 112.9 13.5 166 17-211 4-173 (192)
163 3izq_1 HBS1P, elongation facto 99.6 1E-15 3.5E-20 134.3 12.0 160 16-200 164-362 (611)
164 3vqt_A RF-3, peptide chain rel 99.6 3.9E-15 1.3E-19 129.1 15.1 119 17-152 29-167 (548)
165 1zo1_I IF2, translation initia 99.6 2.7E-17 9.2E-22 140.5 1.5 161 18-206 3-163 (501)
166 2x2e_A Dynamin-1; nitration, h 99.6 3.6E-15 1.2E-19 123.0 14.1 174 17-206 29-254 (353)
167 2wkq_A NPH1-1, RAS-related C3 99.6 4.5E-15 1.5E-19 121.0 14.3 168 17-209 153-329 (332)
168 2f9l_A RAB11B, member RAS onco 99.6 1.3E-14 4.3E-19 110.1 15.8 161 19-210 5-168 (199)
169 2j69_A Bacterial dynamin-like 99.6 7.2E-16 2.5E-20 137.3 9.9 124 17-152 67-245 (695)
170 1nrj_B SR-beta, signal recogni 99.6 3.2E-15 1.1E-19 114.8 12.1 124 16-153 9-136 (218)
171 1jny_A EF-1-alpha, elongation 99.6 2.3E-15 7.9E-20 127.5 11.9 140 17-177 4-181 (435)
172 3avx_A Elongation factor TS, e 99.6 1.1E-14 3.7E-19 133.5 16.9 167 15-210 292-486 (1289)
173 1dar_A EF-G, elongation factor 99.6 7.8E-15 2.7E-19 130.6 14.7 121 15-152 8-144 (691)
174 1f60_A Elongation factor EEF1A 99.6 1.5E-15 5.2E-20 129.3 9.1 140 17-177 5-180 (458)
175 3mca_A HBS1, elongation factor 99.6 1.7E-16 5.9E-21 138.8 2.1 169 16-209 174-396 (592)
176 3dpu_A RAB family protein; roc 99.6 1.3E-14 4.4E-19 126.0 13.7 166 16-212 38-210 (535)
177 1oix_A RAS-related protein RAB 99.6 7.9E-14 2.7E-18 105.1 16.2 160 18-208 28-190 (191)
178 2xex_A Elongation factor G; GT 99.6 2.1E-14 7.2E-19 127.8 14.4 120 16-152 7-142 (693)
179 2qpt_A EH domain-containing pr 99.6 2E-15 6.9E-20 131.0 7.2 140 16-163 62-242 (550)
180 2h5e_A Peptide chain release f 99.6 1.3E-14 4.6E-19 125.2 12.3 119 17-152 11-149 (529)
181 1r5b_A Eukaryotic peptide chai 99.6 3.6E-15 1.2E-19 127.3 8.6 138 17-176 41-217 (467)
182 2qag_C Septin-7; cell cycle, c 99.6 4.2E-14 1.4E-18 118.5 12.8 169 17-205 29-222 (418)
183 1wxq_A GTP-binding protein; st 99.5 8.4E-14 2.9E-18 116.3 13.6 90 20-115 1-113 (397)
184 2rdo_7 EF-G, elongation factor 99.5 1.1E-13 3.8E-18 123.3 15.1 120 16-152 7-149 (704)
185 2dy1_A Elongation factor G; tr 99.5 1.2E-13 4E-18 122.6 14.8 117 17-150 7-139 (665)
186 3r7w_B Gtpase2, GTP-binding pr 99.5 5.2E-14 1.8E-18 113.8 11.2 121 21-152 1-121 (331)
187 2qag_B Septin-6, protein NEDD5 99.5 1.2E-13 4E-18 115.6 11.4 152 18-185 41-217 (427)
188 2qnr_A Septin-2, protein NEDD5 99.5 3.9E-13 1.3E-17 108.4 13.8 174 17-210 16-214 (301)
189 3j25_A Tetracycline resistance 99.5 1.8E-14 6.3E-19 127.2 6.3 118 19-153 2-135 (638)
190 3sop_A Neuronal-specific septi 99.5 1.7E-13 5.7E-18 108.9 8.2 152 19-183 2-179 (270)
191 4fn5_A EF-G 1, elongation fact 99.5 8.7E-13 3E-17 117.9 13.8 129 16-163 10-160 (709)
192 3c5h_A Glucocorticoid receptor 99.4 1.6E-13 5.4E-18 108.2 7.0 89 103-209 162-254 (255)
193 3p32_A Probable GTPase RV1496/ 99.4 1E-13 3.5E-18 114.4 5.1 114 67-210 170-284 (355)
194 1jal_A YCHF protein; nucleotid 99.4 5E-13 1.7E-17 109.8 8.3 90 20-115 3-108 (363)
195 2dby_A GTP-binding protein; GD 99.4 1.5E-12 5.2E-17 107.4 11.0 90 20-115 2-111 (368)
196 1n0u_A EF-2, elongation factor 99.4 7.8E-13 2.7E-17 120.0 9.8 118 17-150 17-163 (842)
197 2www_A Methylmalonic aciduria 99.4 4.9E-13 1.7E-17 110.0 6.5 114 67-210 165-279 (349)
198 2p67_A LAO/AO transport system 99.3 1.1E-11 3.7E-16 101.7 9.9 111 67-209 147-260 (341)
199 1yrb_A ATP(GTP)binding protein 99.3 2E-11 6.7E-16 96.2 10.9 188 13-212 8-259 (262)
200 3h2y_A GTPase family protein; 99.3 3.1E-13 1E-17 111.9 -1.0 125 19-153 160-289 (368)
201 2j37_W Signal recognition part 99.2 8.5E-11 2.9E-15 100.6 12.0 164 17-207 99-310 (504)
202 2qm8_A GTPase/ATPase; G protei 99.2 5E-11 1.7E-15 97.5 10.0 111 67-209 146-260 (337)
203 2ohf_A Protein OLA1, GTP-bindi 99.2 1.4E-11 4.9E-16 102.1 6.7 92 17-114 20-127 (396)
204 3ec1_A YQEH GTPase; atnos1, at 99.2 5.4E-13 1.8E-17 110.5 -1.8 124 19-153 162-290 (369)
205 1tq4_A IIGP1, interferon-induc 99.2 5.8E-10 2E-14 93.2 14.7 170 19-212 69-255 (413)
206 1f5n_A Interferon-induced guan 99.1 2.1E-10 7.1E-15 99.8 10.8 110 16-131 35-148 (592)
207 2wsm_A Hydrogenase expression/ 99.1 1.4E-10 4.8E-15 88.9 7.6 157 18-211 29-215 (221)
208 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 1.1E-10 3.7E-15 97.0 7.4 92 17-114 18-126 (392)
209 1puj_A YLQF, conserved hypothe 99.1 1.7E-10 5.7E-15 92.1 8.0 67 17-88 118-184 (282)
210 3szr_A Interferon-induced GTP- 99.1 1.9E-10 6.6E-15 101.0 7.9 81 69-153 147-230 (608)
211 3ohm_A Guanine nucleotide-bind 99.1 9.2E-10 3.2E-14 89.3 10.8 143 54-212 153-320 (327)
212 4fid_A G protein alpha subunit 98.9 2.5E-08 8.5E-13 81.2 13.6 84 55-150 148-241 (340)
213 3cnl_A YLQF, putative uncharac 98.9 1.5E-09 5E-14 85.7 4.8 60 20-84 100-159 (262)
214 3dm5_A SRP54, signal recogniti 98.8 1.1E-07 3.9E-12 79.9 14.2 143 18-185 99-274 (443)
215 2hf9_A Probable hydrogenase ni 98.7 2.6E-08 8.9E-13 76.4 7.9 25 18-42 37-61 (226)
216 3q5d_A Atlastin-1; G protein, 98.6 1.2E-07 4E-12 80.0 8.5 110 16-131 64-196 (447)
217 2v3c_C SRP54, signal recogniti 98.6 4.6E-08 1.6E-12 82.4 6.0 121 18-151 98-252 (432)
218 1cip_A Protein (guanine nucleo 98.6 3.3E-07 1.1E-11 75.2 10.0 141 55-211 180-345 (353)
219 3kl4_A SRP54, signal recogniti 98.5 9E-07 3.1E-11 74.4 11.8 144 18-185 96-273 (433)
220 1zcb_A G alpha I/13; GTP-bindi 98.5 1.1E-06 3.9E-11 72.2 10.8 83 55-150 188-281 (362)
221 3e70_C DPA, signal recognition 98.4 1.3E-05 4.3E-10 65.1 15.2 145 17-186 127-304 (328)
222 1rj9_A FTSY, signal recognitio 98.4 1.6E-05 5.4E-10 63.9 15.6 145 18-185 101-282 (304)
223 2yhs_A FTSY, cell division pro 98.4 2E-06 6.8E-11 73.1 9.8 147 17-186 291-474 (503)
224 1j8m_F SRP54, signal recogniti 98.3 2.6E-06 8.9E-11 68.3 9.3 144 19-185 98-274 (297)
225 2xxa_A Signal recognition part 98.3 7.3E-06 2.5E-10 69.0 12.1 123 17-151 98-254 (433)
226 4ido_A Atlastin-1; GTPase, GTP 98.3 1.5E-05 5.2E-10 67.0 12.7 125 17-148 65-220 (457)
227 1t9h_A YLOQ, probable GTPase E 98.2 3.4E-07 1.2E-11 73.6 2.2 59 19-82 173-237 (307)
228 1vma_A Cell division protein F 98.2 7.6E-06 2.6E-10 65.8 9.7 96 68-186 186-285 (306)
229 1azs_C GS-alpha; complex (lyas 98.1 2.1E-05 7.3E-10 65.4 11.0 84 55-150 204-297 (402)
230 2og2_A Putative signal recogni 98.1 4.4E-05 1.5E-09 62.6 11.9 147 17-186 155-339 (359)
231 3b9q_A Chloroplast SRP recepto 98.1 4.8E-05 1.6E-09 61.0 12.0 147 17-186 98-282 (302)
232 2px0_A Flagellar biosynthesis 98.1 2E-06 6.9E-11 68.9 3.8 141 18-184 104-273 (296)
233 1zu4_A FTSY; GTPase, signal re 98.1 4E-05 1.4E-09 62.0 11.4 95 68-185 191-289 (320)
234 2yv5_A YJEQ protein; hydrolase 98.0 7.8E-06 2.7E-10 65.6 6.6 59 19-82 165-229 (302)
235 2xtz_A Guanine nucleotide-bind 98.0 3.7E-05 1.3E-09 63.0 10.6 72 68-150 182-263 (354)
236 2ffh_A Protein (FFH); SRP54, s 98.0 6.3E-05 2.2E-09 63.1 11.6 72 67-150 179-250 (425)
237 2rcn_A Probable GTPase ENGC; Y 98.0 3.7E-06 1.3E-10 68.9 3.8 58 20-81 216-280 (358)
238 1u0l_A Probable GTPase ENGC; p 97.9 8.5E-06 2.9E-10 65.4 5.0 60 19-82 169-234 (301)
239 1ls1_A Signal recognition part 97.8 0.00018 6.2E-09 57.4 10.2 93 68-185 180-272 (295)
240 3ney_A 55 kDa erythrocyte memb 97.7 2.8E-06 9.6E-11 63.8 -1.9 27 17-43 17-43 (197)
241 1ye8_A Protein THEP1, hypothet 97.6 2.9E-05 9.8E-10 57.4 2.6 24 20-43 1-24 (178)
242 1lvg_A Guanylate kinase, GMP k 97.6 2.8E-05 9.6E-10 58.4 2.3 24 19-42 4-27 (198)
243 1puj_A YLQF, conserved hypothe 97.5 0.00011 3.9E-09 58.2 5.7 104 73-210 3-106 (282)
244 1u0l_A Probable GTPase ENGC; p 97.5 0.00014 5E-09 58.2 6.2 106 68-205 62-168 (301)
245 1kgd_A CASK, peripheral plasma 97.5 5.4E-05 1.9E-09 55.8 2.8 24 20-43 6-29 (180)
246 3h2y_A GTPase family protein; 97.5 0.00045 1.6E-08 56.9 8.5 101 92-209 58-159 (368)
247 3l82_B F-box only protein 4; T 97.4 0.00011 3.7E-09 55.5 4.1 108 91-211 113-224 (227)
248 3tif_A Uncharacterized ABC tra 97.4 7.2E-05 2.4E-09 57.8 3.2 27 18-44 30-56 (235)
249 1znw_A Guanylate kinase, GMP k 97.4 7.3E-05 2.5E-09 56.4 2.8 27 17-43 18-44 (207)
250 3tr0_A Guanylate kinase, GMP k 97.4 8E-05 2.7E-09 55.8 2.9 25 18-42 6-30 (205)
251 2pcj_A ABC transporter, lipopr 97.4 8.5E-05 2.9E-09 56.9 3.1 25 20-44 31-55 (224)
252 3a00_A Guanylate kinase, GMP k 97.4 6.9E-05 2.4E-09 55.5 2.3 23 21-43 3-25 (186)
253 3c8u_A Fructokinase; YP_612366 97.4 9E-05 3.1E-09 55.9 2.9 27 17-43 20-46 (208)
254 1z6g_A Guanylate kinase; struc 97.4 7.9E-05 2.7E-09 56.8 2.6 26 18-43 22-47 (218)
255 2cbz_A Multidrug resistance-as 97.4 0.0001 3.5E-09 57.0 3.2 27 18-44 30-56 (237)
256 1s96_A Guanylate kinase, GMP k 97.3 9E-05 3.1E-09 56.6 2.8 27 17-43 14-40 (219)
257 2onk_A Molybdate/tungstate ABC 97.3 0.00011 3.7E-09 56.9 3.2 25 20-44 25-49 (240)
258 3ec1_A YQEH GTPase; atnos1, at 97.3 9.1E-05 3.1E-09 61.1 2.9 101 93-209 61-161 (369)
259 1zp6_A Hypothetical protein AT 97.3 0.00014 4.8E-09 53.8 3.7 25 18-42 8-32 (191)
260 3gfo_A Cobalt import ATP-bindi 97.3 0.00011 3.8E-09 58.1 3.2 26 19-44 34-59 (275)
261 4g1u_C Hemin import ATP-bindin 97.3 0.00011 3.8E-09 57.8 3.2 26 19-44 37-62 (266)
262 1g6h_A High-affinity branched- 97.3 0.00012 4E-09 57.4 3.2 26 19-44 33-58 (257)
263 1b0u_A Histidine permease; ABC 97.3 0.00012 4E-09 57.5 3.2 26 19-44 32-57 (262)
264 2ff7_A Alpha-hemolysin translo 97.3 0.00012 4.1E-09 57.0 3.2 26 19-44 35-60 (247)
265 1sgw_A Putative ABC transporte 97.3 0.00011 3.8E-09 55.9 3.0 25 20-44 36-60 (214)
266 2pze_A Cystic fibrosis transme 97.3 0.00012 4.2E-09 56.2 3.2 26 19-44 34-59 (229)
267 2qt1_A Nicotinamide riboside k 97.3 0.00022 7.5E-09 53.6 4.4 31 12-42 14-44 (207)
268 2olj_A Amino acid ABC transpor 97.3 0.00013 4.5E-09 57.2 3.2 26 19-44 50-75 (263)
269 1ji0_A ABC transporter; ATP bi 97.3 0.00014 4.7E-09 56.4 3.2 26 19-44 32-57 (240)
270 1mv5_A LMRA, multidrug resista 97.3 0.00023 8E-09 55.1 4.5 27 18-44 27-53 (243)
271 4gp7_A Metallophosphoesterase; 97.3 0.00013 4.6E-09 53.3 2.9 23 19-41 9-31 (171)
272 1vpl_A ABC transporter, ATP-bi 97.3 0.00014 4.9E-09 56.8 3.2 26 19-44 41-66 (256)
273 2d2e_A SUFC protein; ABC-ATPas 97.3 0.00015 5E-09 56.5 3.3 24 19-42 29-52 (250)
274 2qi9_C Vitamin B12 import ATP- 97.3 0.00014 4.9E-09 56.6 3.2 25 20-44 27-51 (249)
275 2ghi_A Transport protein; mult 97.3 0.00014 4.9E-09 56.9 3.2 26 18-43 45-70 (260)
276 3asz_A Uridine kinase; cytidin 97.3 0.00013 4.4E-09 55.0 2.8 25 18-42 5-29 (211)
277 4dzz_A Plasmid partitioning pr 97.3 0.0023 7.9E-08 47.6 9.8 69 68-150 75-143 (206)
278 2eyu_A Twitching motility prot 97.3 0.00014 4.9E-09 57.0 3.1 27 17-43 23-49 (261)
279 2zu0_C Probable ATP-dependent 97.3 0.00015 5.3E-09 57.0 3.2 24 19-42 46-69 (267)
280 2ixe_A Antigen peptide transpo 97.2 0.00016 5.3E-09 57.1 3.2 27 18-44 44-70 (271)
281 2ihy_A ABC transporter, ATP-bi 97.2 0.00016 5.3E-09 57.4 3.2 26 19-44 47-72 (279)
282 1htw_A HI0065; nucleotide-bind 97.2 0.00016 5.4E-09 52.3 3.0 26 18-43 32-57 (158)
283 2yz2_A Putative ABC transporte 97.2 0.00017 5.8E-09 56.7 3.2 27 18-44 32-58 (266)
284 2nq2_C Hypothetical ABC transp 97.2 0.00017 5.8E-09 56.3 3.2 26 19-44 31-56 (253)
285 3b85_A Phosphate starvation-in 97.2 0.00012 3.9E-09 55.5 2.1 23 20-42 23-45 (208)
286 3tau_A Guanylate kinase, GMP k 97.2 0.00019 6.3E-09 54.2 3.2 26 18-43 7-32 (208)
287 2pjz_A Hypothetical protein ST 97.2 0.00022 7.6E-09 56.0 3.2 24 20-43 31-54 (263)
288 2j41_A Guanylate kinase; GMP, 97.1 0.00023 7.7E-09 53.3 3.1 25 19-43 6-30 (207)
289 2v9p_A Replication protein E1; 97.1 0.0002 6.9E-09 57.4 2.8 25 18-42 125-149 (305)
290 3fvq_A Fe(3+) IONS import ATP- 97.1 0.00026 8.8E-09 58.0 3.1 26 19-44 30-55 (359)
291 3nh6_A ATP-binding cassette SU 97.1 0.00019 6.6E-09 57.6 2.3 27 18-44 79-105 (306)
292 2i3b_A HCR-ntpase, human cance 97.1 0.00021 7.2E-09 53.2 2.3 23 21-43 3-25 (189)
293 3aez_A Pantothenate kinase; tr 97.1 0.00029 1E-08 56.7 3.2 28 16-43 87-114 (312)
294 1ex7_A Guanylate kinase; subst 97.1 0.00018 6.1E-09 53.5 1.8 21 22-42 4-24 (186)
295 3lnc_A Guanylate kinase, GMP k 97.1 0.00022 7.6E-09 54.6 2.4 26 18-43 26-52 (231)
296 2qor_A Guanylate kinase; phosp 97.1 0.00034 1.2E-08 52.5 3.4 26 17-42 10-35 (204)
297 1z47_A CYSA, putative ABC-tran 97.1 0.0003 1E-08 57.6 3.3 26 19-44 41-66 (355)
298 2bbs_A Cystic fibrosis transme 97.1 0.00034 1.2E-08 55.7 3.5 26 19-44 64-89 (290)
299 3tui_C Methionine import ATP-b 97.0 0.00032 1.1E-08 57.6 3.2 27 18-44 53-79 (366)
300 3jvv_A Twitching mobility prot 97.0 0.00029 9.9E-09 57.7 3.0 25 19-43 123-147 (356)
301 3rlf_A Maltose/maltodextrin im 97.0 0.00033 1.1E-08 57.8 3.2 26 19-44 29-54 (381)
302 2gza_A Type IV secretion syste 97.0 0.0003 1E-08 57.8 3.0 27 18-44 174-200 (361)
303 2yyz_A Sugar ABC transporter, 97.0 0.00033 1.1E-08 57.4 3.3 26 19-44 29-54 (359)
304 2it1_A 362AA long hypothetical 97.0 0.00034 1.2E-08 57.4 3.2 26 19-44 29-54 (362)
305 2pt7_A CAG-ALFA; ATPase, prote 97.0 0.00027 9.1E-09 57.4 2.6 24 20-43 172-195 (330)
306 4eun_A Thermoresistant glucoki 97.0 0.00032 1.1E-08 52.5 2.8 24 18-41 28-51 (200)
307 1kag_A SKI, shikimate kinase I 97.0 0.00037 1.3E-08 50.6 3.0 23 20-42 5-27 (173)
308 1g29_1 MALK, maltose transport 97.0 0.00037 1.3E-08 57.5 3.3 25 20-44 30-54 (372)
309 1v43_A Sugar-binding transport 97.0 0.00038 1.3E-08 57.4 3.2 26 19-44 37-62 (372)
310 2bbw_A Adenylate kinase 4, AK4 97.0 0.00045 1.5E-08 53.4 3.5 26 19-44 27-55 (246)
311 2jeo_A Uridine-cytidine kinase 97.0 0.00039 1.3E-08 53.8 3.1 26 17-42 23-48 (245)
312 1knq_A Gluconate kinase; ALFA/ 97.0 0.00046 1.6E-08 50.3 3.3 24 18-41 7-30 (175)
313 2bdt_A BH3686; alpha-beta prot 97.0 0.00046 1.6E-08 51.0 3.1 21 21-41 4-24 (189)
314 2f1r_A Molybdopterin-guanine d 97.0 0.00015 5.2E-09 53.1 0.5 24 20-43 3-26 (171)
315 3uie_A Adenylyl-sulfate kinase 96.9 0.00045 1.6E-08 51.6 3.0 27 17-43 23-49 (200)
316 3gd7_A Fusion complex of cysti 96.9 0.00046 1.6E-08 57.2 3.1 27 18-44 46-72 (390)
317 2oap_1 GSPE-2, type II secreti 96.9 0.0004 1.4E-08 59.7 2.9 25 19-43 260-284 (511)
318 2ewv_A Twitching motility prot 96.9 0.00043 1.5E-08 57.1 2.9 27 17-43 134-160 (372)
319 3d31_A Sulfate/molybdate ABC t 96.9 0.00031 1.1E-08 57.3 2.0 26 19-44 26-51 (348)
320 4e22_A Cytidylate kinase; P-lo 96.9 0.00071 2.4E-08 52.6 3.9 27 17-43 25-54 (252)
321 1np6_A Molybdopterin-guanine d 96.9 0.00058 2E-08 50.1 3.1 24 19-42 6-29 (174)
322 1p9r_A General secretion pathw 96.9 0.00049 1.7E-08 57.6 2.9 26 18-43 166-191 (418)
323 4a74_A DNA repair and recombin 96.9 0.0004 1.4E-08 52.8 2.2 24 19-42 25-48 (231)
324 3l2o_B F-box only protein 4; s 96.9 0.00076 2.6E-08 53.4 3.7 106 93-211 200-309 (312)
325 3lw7_A Adenylate kinase relate 96.9 0.0006 2.1E-08 49.3 3.1 20 20-39 2-21 (179)
326 1sq5_A Pantothenate kinase; P- 96.9 0.00058 2E-08 54.8 3.2 26 17-42 78-103 (308)
327 3tqc_A Pantothenate kinase; bi 96.9 0.00063 2.1E-08 54.9 3.3 27 16-42 89-115 (321)
328 1cke_A CK, MSSA, protein (cyti 96.8 0.0007 2.4E-08 51.4 3.5 22 20-41 6-27 (227)
329 2wwf_A Thymidilate kinase, put 96.8 0.0009 3.1E-08 50.2 3.9 27 15-41 6-32 (212)
330 2vp4_A Deoxynucleoside kinase; 96.8 0.0007 2.4E-08 51.8 3.3 26 17-42 18-43 (230)
331 1jjv_A Dephospho-COA kinase; P 96.8 0.00074 2.5E-08 50.6 3.4 22 20-41 3-24 (206)
332 2ehv_A Hypothetical protein PH 96.8 0.00065 2.2E-08 52.3 3.1 23 18-40 29-51 (251)
333 1oxx_K GLCV, glucose, ABC tran 96.8 0.00031 1.1E-08 57.5 1.3 26 19-44 31-56 (353)
334 1lw7_A Transcriptional regulat 96.8 0.00041 1.4E-08 57.0 1.9 25 19-43 170-194 (365)
335 1nij_A Hypothetical protein YJ 96.8 0.00051 1.7E-08 55.4 2.3 26 18-43 3-28 (318)
336 3ec2_A DNA replication protein 96.8 0.00049 1.7E-08 50.5 2.1 25 19-43 38-62 (180)
337 2cdn_A Adenylate kinase; phosp 96.8 0.00094 3.2E-08 49.8 3.6 25 17-41 18-42 (201)
338 3kb2_A SPBC2 prophage-derived 96.8 0.0008 2.7E-08 48.6 3.0 22 20-41 2-23 (173)
339 1odf_A YGR205W, hypothetical 3 96.8 0.0009 3.1E-08 53.3 3.5 27 16-42 28-54 (290)
340 2if2_A Dephospho-COA kinase; a 96.7 0.00081 2.8E-08 50.2 2.9 22 20-41 2-23 (204)
341 2kjq_A DNAA-related protein; s 96.7 0.00061 2.1E-08 48.6 2.1 26 18-43 35-60 (149)
342 1rz3_A Hypothetical protein rb 96.7 0.00089 3E-08 50.1 3.1 25 17-41 20-44 (201)
343 2yv5_A YJEQ protein; hydrolase 96.7 0.0056 1.9E-07 48.9 7.9 86 100-204 76-163 (302)
344 1y63_A LMAJ004144AAA protein; 96.7 0.0012 4.1E-08 48.6 3.7 25 18-42 9-33 (184)
345 3vaa_A Shikimate kinase, SK; s 96.7 0.001 3.4E-08 49.7 3.3 25 17-41 23-47 (199)
346 1ukz_A Uridylate kinase; trans 96.7 0.0015 5.2E-08 48.7 4.2 27 14-40 10-36 (203)
347 3cm0_A Adenylate kinase; ATP-b 96.7 0.0011 3.7E-08 48.7 3.2 23 18-40 3-25 (186)
348 1kht_A Adenylate kinase; phosp 96.7 0.001 3.5E-08 48.9 3.1 23 19-41 3-25 (192)
349 1ly1_A Polynucleotide kinase; 96.7 0.0011 3.8E-08 48.2 3.3 22 20-41 3-24 (181)
350 3kta_A Chromosome segregation 96.7 0.00094 3.2E-08 48.9 2.8 21 21-41 28-48 (182)
351 2npi_A Protein CLP1; CLP1-PCF1 96.6 0.00077 2.6E-08 57.1 2.5 26 18-43 137-162 (460)
352 2rhm_A Putative kinase; P-loop 96.6 0.0013 4.5E-08 48.4 3.5 24 18-41 4-27 (193)
353 2jaq_A Deoxyguanosine kinase; 96.6 0.0011 3.8E-08 49.3 3.1 21 21-41 2-22 (205)
354 1qhx_A CPT, protein (chloramph 96.6 0.0014 4.6E-08 47.8 3.5 22 20-41 4-25 (178)
355 1yqt_A RNAse L inhibitor; ATP- 96.6 0.0011 3.6E-08 57.5 3.2 28 17-44 45-72 (538)
356 3t61_A Gluconokinase; PSI-biol 96.6 0.001 3.6E-08 49.6 2.8 23 19-41 18-40 (202)
357 2qz4_A Paraplegin; AAA+, SPG7, 96.6 0.014 4.8E-07 45.0 9.3 24 18-41 38-61 (262)
358 2v54_A DTMP kinase, thymidylat 96.6 0.0015 5.1E-08 48.6 3.6 24 19-42 4-27 (204)
359 1xjc_A MOBB protein homolog; s 96.6 0.0014 4.6E-08 47.9 3.2 24 19-42 4-27 (169)
360 3fb4_A Adenylate kinase; psych 96.6 0.0013 4.3E-08 49.7 3.1 21 20-40 1-21 (216)
361 2yvu_A Probable adenylyl-sulfa 96.6 0.0019 6.4E-08 47.5 4.0 26 17-42 11-36 (186)
362 4b4t_L 26S protease subunit RP 96.6 0.024 8.1E-07 47.6 11.0 25 18-42 214-238 (437)
363 3iij_A Coilin-interacting nucl 96.5 0.0017 6E-08 47.4 3.6 24 17-40 9-32 (180)
364 3dl0_A Adenylate kinase; phosp 96.5 0.0015 5E-08 49.3 3.1 21 20-40 1-21 (216)
365 1nks_A Adenylate kinase; therm 96.5 0.0014 4.9E-08 48.1 3.0 22 20-41 2-23 (194)
366 3j16_B RLI1P; ribosome recycli 96.5 0.0018 6E-08 56.9 4.0 29 17-45 101-129 (608)
367 3trf_A Shikimate kinase, SK; a 96.5 0.0016 5.3E-08 47.8 3.2 22 19-40 5-26 (185)
368 1aky_A Adenylate kinase; ATP:A 96.5 0.0016 5.5E-08 49.3 3.3 23 18-40 3-25 (220)
369 3b60_A Lipid A export ATP-bind 96.5 0.0015 5.1E-08 57.1 3.5 27 18-44 368-394 (582)
370 2plr_A DTMP kinase, probable t 96.5 0.0018 6.3E-08 48.3 3.6 23 19-41 4-26 (213)
371 3ozx_A RNAse L inhibitor; ATP 96.5 0.0018 6.1E-08 56.0 3.8 28 17-44 23-50 (538)
372 2x8a_A Nuclear valosin-contain 96.5 0.0011 3.8E-08 52.2 2.3 21 22-42 47-67 (274)
373 1uf9_A TT1252 protein; P-loop, 96.5 0.0018 6.2E-08 48.1 3.4 26 17-42 6-31 (203)
374 3end_A Light-independent proto 96.5 0.0067 2.3E-07 48.3 6.9 23 17-39 39-61 (307)
375 1tev_A UMP-CMP kinase; ploop, 96.5 0.0017 6E-08 47.7 3.3 22 19-40 3-24 (196)
376 2pez_A Bifunctional 3'-phospho 96.5 0.0019 6.6E-08 47.2 3.4 24 18-41 4-27 (179)
377 1vht_A Dephospho-COA kinase; s 96.5 0.002 6.7E-08 48.7 3.5 23 19-41 4-26 (218)
378 1nn5_A Similar to deoxythymidy 96.4 0.0019 6.4E-08 48.5 3.4 24 18-41 8-31 (215)
379 2obl_A ESCN; ATPase, hydrolase 96.4 0.0012 4.1E-08 53.9 2.4 26 18-43 70-95 (347)
380 3euj_A Chromosome partition pr 96.4 0.0012 4.2E-08 56.1 2.5 23 20-42 30-52 (483)
381 3b5x_A Lipid A export ATP-bind 96.4 0.002 6.9E-08 56.2 4.0 27 18-44 368-394 (582)
382 3bk7_A ABC transporter ATP-bin 96.4 0.002 6.9E-08 56.5 3.9 28 17-44 115-142 (607)
383 1gvn_B Zeta; postsegregational 96.4 0.0023 7.8E-08 50.8 3.9 26 16-41 30-55 (287)
384 2yl4_A ATP-binding cassette SU 96.4 0.0015 5.1E-08 57.2 3.0 27 18-44 369-395 (595)
385 2c95_A Adenylate kinase 1; tra 96.4 0.002 6.7E-08 47.6 3.3 23 18-40 8-30 (196)
386 3ozx_A RNAse L inhibitor; ATP 96.4 0.0022 7.5E-08 55.4 4.0 25 20-44 295-319 (538)
387 3qf4_B Uncharacterized ABC tra 96.4 0.0016 5.5E-08 57.1 3.2 28 17-44 379-406 (598)
388 1ixz_A ATP-dependent metallopr 96.4 0.0013 4.5E-08 50.9 2.3 21 22-42 52-72 (254)
389 4a82_A Cystic fibrosis transme 96.4 0.0014 4.7E-08 57.3 2.7 27 18-44 366-392 (578)
390 4eaq_A DTMP kinase, thymidylat 96.4 0.0028 9.7E-08 48.5 4.1 27 16-42 23-49 (229)
391 3tlx_A Adenylate kinase 2; str 96.4 0.0024 8.1E-08 49.3 3.6 24 17-40 27-50 (243)
392 3h4m_A Proteasome-activating n 96.4 0.015 5E-07 45.6 8.3 23 19-41 51-73 (285)
393 1fnn_A CDC6P, cell division co 96.4 0.03 1E-06 45.7 10.5 22 21-42 46-67 (389)
394 3qf4_A ABC transporter, ATP-bi 96.4 0.0018 6.2E-08 56.6 3.1 27 18-44 368-394 (587)
395 1yqt_A RNAse L inhibitor; ATP- 96.3 0.0027 9.4E-08 54.9 4.2 26 19-44 312-337 (538)
396 2pt5_A Shikimate kinase, SK; a 96.3 0.0022 7.4E-08 46.2 3.1 22 20-41 1-22 (168)
397 1zd8_A GTP:AMP phosphotransfer 96.3 0.002 7E-08 49.0 3.0 22 19-40 7-28 (227)
398 1f2t_A RAD50 ABC-ATPase; DNA d 96.3 0.0021 7.2E-08 45.8 2.9 21 20-40 24-44 (149)
399 4b4t_I 26S protease regulatory 96.3 0.026 8.9E-07 47.2 9.7 24 19-42 216-239 (437)
400 4b4t_K 26S protease regulatory 96.3 0.027 9.2E-07 47.2 9.9 24 19-42 206-229 (428)
401 3bk7_A ABC transporter ATP-bin 96.3 0.0029 1E-07 55.5 4.2 25 20-44 383-407 (607)
402 1e4v_A Adenylate kinase; trans 96.3 0.0022 7.7E-08 48.3 3.0 21 20-40 1-21 (214)
403 2dpy_A FLII, flagellum-specifi 96.3 0.0017 5.7E-08 54.7 2.4 27 17-43 155-181 (438)
404 3qf7_A RAD50; ABC-ATPase, ATPa 96.3 0.0021 7.2E-08 52.8 2.9 20 21-40 25-44 (365)
405 2z0h_A DTMP kinase, thymidylat 96.3 0.0025 8.5E-08 47.1 3.1 21 21-41 2-22 (197)
406 1zak_A Adenylate kinase; ATP:A 96.3 0.0025 8.4E-08 48.3 3.1 22 19-40 5-26 (222)
407 2w0m_A SSO2452; RECA, SSPF, un 96.2 0.0019 6.4E-08 49.0 2.4 22 20-41 24-45 (235)
408 1ak2_A Adenylate kinase isoenz 96.2 0.0029 9.9E-08 48.4 3.5 25 16-40 13-37 (233)
409 2f6r_A COA synthase, bifunctio 96.2 0.0051 1.8E-07 48.6 5.0 24 17-40 73-96 (281)
410 2pbr_A DTMP kinase, thymidylat 96.2 0.0026 9E-08 46.8 3.1 21 21-41 2-22 (195)
411 1via_A Shikimate kinase; struc 96.2 0.0024 8.4E-08 46.4 2.8 21 21-41 6-26 (175)
412 4b4t_J 26S protease regulatory 96.2 0.036 1.2E-06 46.0 10.0 24 19-42 182-205 (405)
413 1iy2_A ATP-dependent metallopr 96.2 0.0019 6.6E-08 50.7 2.3 21 22-42 76-96 (278)
414 1qf9_A UMP/CMP kinase, protein 96.2 0.0037 1.3E-07 45.9 3.7 21 20-40 7-27 (194)
415 1xwi_A SKD1 protein; VPS4B, AA 96.2 0.14 4.6E-06 41.1 13.2 25 18-42 44-68 (322)
416 3r20_A Cytidylate kinase; stru 96.2 0.003 1E-07 48.6 3.2 23 18-40 8-30 (233)
417 1uj2_A Uridine-cytidine kinase 96.2 0.003 1E-07 49.0 3.2 25 17-41 20-44 (252)
418 1gtv_A TMK, thymidylate kinase 96.2 0.0012 4E-08 49.6 0.8 21 21-41 2-22 (214)
419 2ze6_A Isopentenyl transferase 96.2 0.003 1E-07 49.1 3.2 21 21-41 3-23 (253)
420 2vli_A Antibiotic resistance p 96.2 0.0022 7.6E-08 46.8 2.3 22 19-40 5-26 (183)
421 2bwj_A Adenylate kinase 5; pho 96.1 0.003 1E-07 46.7 3.0 23 19-41 12-34 (199)
422 3cnl_A YLQF, putative uncharac 96.1 0.0049 1.7E-07 48.2 4.3 79 101-206 19-97 (262)
423 2grj_A Dephospho-COA kinase; T 96.1 0.0033 1.1E-07 46.8 3.1 25 17-41 10-34 (192)
424 2p5t_B PEZT; postsegregational 96.1 0.0025 8.7E-08 49.4 2.6 26 16-41 29-54 (253)
425 1in4_A RUVB, holliday junction 96.1 0.0022 7.6E-08 51.9 2.4 24 20-43 52-75 (334)
426 3j16_B RLI1P; ribosome recycli 96.1 0.0037 1.3E-07 54.8 3.9 25 21-45 380-404 (608)
427 2iyv_A Shikimate kinase, SK; t 96.1 0.003 1E-07 46.2 2.9 21 20-40 3-23 (184)
428 2xb4_A Adenylate kinase; ATP-b 96.1 0.0032 1.1E-07 47.8 3.1 21 20-40 1-21 (223)
429 4f4c_A Multidrug resistance pr 96.1 0.0024 8.1E-08 61.0 2.7 27 18-44 1104-1130(1321)
430 1cr0_A DNA primase/helicase; R 96.1 0.0023 7.7E-08 50.8 2.2 24 19-42 35-58 (296)
431 1e6c_A Shikimate kinase; phosp 96.1 0.0031 1.1E-07 45.5 2.8 21 20-40 3-23 (173)
432 4b4t_H 26S protease regulatory 96.1 0.029 1E-06 47.3 9.0 25 18-42 242-266 (467)
433 3a4m_A L-seryl-tRNA(SEC) kinas 96.1 0.0039 1.3E-07 48.6 3.4 23 19-41 4-26 (260)
434 3nwj_A ATSK2; P loop, shikimat 96.1 0.0034 1.2E-07 48.8 3.0 23 19-41 48-70 (250)
435 1jbk_A CLPB protein; beta barr 96.0 0.0043 1.5E-07 45.1 3.4 24 19-42 43-66 (195)
436 2chg_A Replication factor C sm 96.0 0.071 2.4E-06 39.4 10.3 21 21-41 40-60 (226)
437 1m7g_A Adenylylsulfate kinase; 96.0 0.0045 1.5E-07 46.5 3.5 25 18-42 24-48 (211)
438 3thx_A DNA mismatch repair pro 96.0 0.11 3.6E-06 47.9 12.8 21 19-39 662-682 (934)
439 1svm_A Large T antigen; AAA+ f 96.0 0.0037 1.3E-07 51.6 2.9 25 18-42 168-192 (377)
440 3umf_A Adenylate kinase; rossm 96.0 0.0063 2.2E-07 46.2 4.0 26 16-41 26-51 (217)
441 1zuh_A Shikimate kinase; alpha 95.9 0.0048 1.6E-07 44.5 3.0 21 20-40 8-28 (168)
442 2cvh_A DNA repair and recombin 95.9 0.0034 1.2E-07 47.1 2.4 23 19-41 20-42 (220)
443 3be4_A Adenylate kinase; malar 95.9 0.0045 1.5E-07 46.7 2.9 21 20-40 6-26 (217)
444 3sr0_A Adenylate kinase; phosp 95.9 0.0051 1.7E-07 46.3 3.2 22 20-41 1-22 (206)
445 1n0w_A DNA repair protein RAD5 95.9 0.0036 1.2E-07 47.8 2.3 24 19-42 24-47 (243)
446 1qhl_A Protein (cell division 95.9 0.00047 1.6E-08 52.9 -2.7 23 21-43 29-51 (227)
447 2iw3_A Elongation factor 3A; a 95.8 0.0025 8.6E-08 58.6 1.5 25 20-44 700-724 (986)
448 4b4t_M 26S protease regulatory 95.8 0.024 8.1E-07 47.6 7.3 25 18-42 214-238 (434)
449 1lv7_A FTSH; alpha/beta domain 95.8 0.006 2E-07 47.2 3.4 23 20-42 46-68 (257)
450 1q3t_A Cytidylate kinase; nucl 95.8 0.0064 2.2E-07 46.5 3.5 26 16-41 13-38 (236)
451 4f4c_A Multidrug resistance pr 95.8 0.0057 1.9E-07 58.4 3.7 27 18-44 443-469 (1321)
452 3vfd_A Spastin; ATPase, microt 95.7 0.047 1.6E-06 45.0 8.7 23 19-41 148-170 (389)
453 2w58_A DNAI, primosome compone 95.7 0.0065 2.2E-07 45.1 3.3 23 20-42 55-77 (202)
454 3exa_A TRNA delta(2)-isopenten 95.7 0.0068 2.3E-07 48.6 3.5 24 19-42 3-26 (322)
455 3qks_A DNA double-strand break 95.7 0.0059 2E-07 45.8 2.9 21 20-40 24-44 (203)
456 3bos_A Putative DNA replicatio 95.7 0.0067 2.3E-07 46.0 3.3 25 18-42 51-75 (242)
457 1a7j_A Phosphoribulokinase; tr 95.7 0.0041 1.4E-07 49.4 2.1 24 18-41 4-27 (290)
458 3n70_A Transport activator; si 95.7 0.0079 2.7E-07 42.4 3.3 25 19-43 24-48 (145)
459 2p65_A Hypothetical protein PF 95.7 0.0054 1.8E-07 44.5 2.5 24 19-42 43-66 (187)
460 3a8t_A Adenylate isopentenyltr 95.7 0.0088 3E-07 48.4 3.9 24 20-43 41-64 (339)
461 3ux8_A Excinuclease ABC, A sub 95.6 0.0042 1.4E-07 55.2 2.2 22 19-40 348-369 (670)
462 3g5u_A MCG1178, multidrug resi 95.6 0.0061 2.1E-07 58.0 3.3 27 18-44 415-441 (1284)
463 4aby_A DNA repair protein RECN 95.6 0.0023 7.8E-08 53.3 0.2 20 21-40 62-81 (415)
464 2iw3_A Elongation factor 3A; a 95.6 0.0053 1.8E-07 56.5 2.6 25 19-43 461-485 (986)
465 4fcw_A Chaperone protein CLPB; 95.5 0.011 3.7E-07 47.0 4.1 26 17-42 45-70 (311)
466 1nlf_A Regulatory protein REPA 95.5 0.006 2.1E-07 47.9 2.4 24 18-41 29-52 (279)
467 3t15_A Ribulose bisphosphate c 95.5 0.013 4.5E-07 46.5 4.3 25 18-42 35-59 (293)
468 2qmh_A HPR kinase/phosphorylas 95.5 0.011 3.7E-07 44.2 3.5 24 19-42 34-57 (205)
469 3syl_A Protein CBBX; photosynt 95.5 0.01 3.5E-07 47.1 3.7 25 17-41 65-89 (309)
470 1ltq_A Polynucleotide kinase; 95.4 0.009 3.1E-07 47.3 3.3 22 20-41 3-24 (301)
471 1zcb_A G alpha I/13; GTP-bindi 95.4 0.01 3.5E-07 48.7 3.6 23 17-39 31-53 (362)
472 3cr8_A Sulfate adenylyltranfer 95.4 0.0044 1.5E-07 53.7 1.4 26 18-43 368-393 (552)
473 3ake_A Cytidylate kinase; CMP 95.4 0.0092 3.1E-07 44.3 3.1 21 21-41 4-24 (208)
474 3cf2_A TER ATPase, transitiona 95.4 0.069 2.4E-06 48.3 9.2 27 17-43 236-262 (806)
475 1t9h_A YLOQ, probable GTPase E 95.4 0.068 2.3E-06 42.7 8.2 50 100-152 83-132 (307)
476 3b9p_A CG5977-PA, isoform A; A 95.4 0.0099 3.4E-07 46.9 3.4 23 19-41 54-76 (297)
477 3u61_B DNA polymerase accessor 95.3 0.8 2.7E-05 36.3 17.6 21 21-41 50-70 (324)
478 3lv8_A DTMP kinase, thymidylat 95.3 0.01 3.5E-07 45.6 3.2 33 9-41 17-49 (236)
479 3foz_A TRNA delta(2)-isopenten 95.3 0.013 4.3E-07 46.9 3.7 23 19-41 10-32 (316)
480 3co5_A Putative two-component 95.3 0.0079 2.7E-07 42.3 2.3 23 20-42 28-50 (143)
481 3d3q_A TRNA delta(2)-isopenten 95.3 0.01 3.5E-07 48.1 3.2 22 20-41 8-29 (340)
482 3g5u_A MCG1178, multidrug resi 95.3 0.0089 3E-07 56.9 3.2 27 18-44 1058-1084(1284)
483 1sxj_E Activator 1 40 kDa subu 95.3 0.011 3.7E-07 47.9 3.3 20 22-41 39-58 (354)
484 1e69_A Chromosome segregation 95.3 0.0074 2.5E-07 48.6 2.3 20 21-40 26-45 (322)
485 3cf0_A Transitional endoplasmi 95.3 0.011 3.9E-07 46.9 3.4 24 19-42 49-72 (301)
486 4ag6_A VIRB4 ATPase, type IV s 95.3 0.01 3.5E-07 49.1 3.1 25 18-42 34-58 (392)
487 3crm_A TRNA delta(2)-isopenten 95.3 0.011 3.8E-07 47.6 3.2 22 20-41 6-27 (323)
488 1p5z_B DCK, deoxycytidine kina 95.2 0.0087 3E-07 46.6 2.5 25 17-41 22-46 (263)
489 1d2n_A N-ethylmaleimide-sensit 95.2 0.015 5.1E-07 45.4 3.7 26 17-42 62-87 (272)
490 3qkt_A DNA double-strand break 95.2 0.013 4.4E-07 47.5 3.5 20 21-40 25-44 (339)
491 3eph_A TRNA isopentenyltransfe 95.2 0.012 4.2E-07 48.8 3.3 22 19-40 2-23 (409)
492 2rcn_A Probable GTPase ENGC; Y 95.2 0.15 5.2E-06 41.6 9.7 85 101-203 128-212 (358)
493 1njg_A DNA polymerase III subu 95.1 0.012 4.1E-07 44.3 2.9 22 20-41 46-67 (250)
494 1w1w_A Structural maintenance 95.1 0.009 3.1E-07 50.1 2.4 22 20-41 27-48 (430)
495 2ius_A DNA translocase FTSK; n 95.1 0.011 3.7E-07 50.7 2.8 24 18-41 166-189 (512)
496 1pzn_A RAD51, DNA repair and r 95.1 0.0091 3.1E-07 48.7 2.2 25 19-43 131-155 (349)
497 2o5v_A DNA replication and rep 95.0 0.012 4.1E-07 48.2 2.9 21 21-41 28-48 (359)
498 2h92_A Cytidylate kinase; ross 95.0 0.013 4.6E-07 44.0 2.9 23 19-41 3-25 (219)
499 3gmt_A Adenylate kinase; ssgci 95.0 0.015 5E-07 44.5 3.1 23 18-40 7-29 (230)
500 2ocp_A DGK, deoxyguanosine kin 95.0 0.016 5.3E-07 44.5 3.3 22 20-41 3-24 (241)
No 1
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=100.00 E-value=1.5e-33 Score=222.32 Aligned_cols=205 Identities=32% Similarity=0.572 Sum_probs=162.7
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCc-HHHHHHH
Q 036158 15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS-EFVSKEI 93 (225)
Q Consensus 15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~-~~~~~~~ 93 (225)
+..+.++|+|+|.+|+|||||+|+|++...+.......++|..+....+.+ .+..+.||||||+.+..... ++....+
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEE-TTEEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEE-CCcEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 346789999999999999999999999987766555556788888888888 88999999999998654333 3344556
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc-ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK-ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 172 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~ 172 (225)
..++..+.+++|++|+|+|++ +++..+...++++.+.++.+ ...|+++++||+|+... .+++++.....+.++++
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~---~~~~~l~~~~~~~l~~l 171 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLG-RFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGG---SLHDYVSNTENRALREL 171 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETT-BCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC---CHHHHHHHCCCHHHHHH
T ss_pred HHHHHhcCCCCCEEEEEEeCC-CCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCC---CHHHHHhhcccHHHHHH
Confidence 666666678999999999998 68888889999999998775 34688899999997543 77888776555779999
Q ss_pred HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCCCHHHHhhcC
Q 036158 173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 225 (225)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 225 (225)
++.|+.+++.|++... ++..+.|+++|++.|.+++.++++.+|+++||+++|
T Consensus 172 ~~~~g~~~~~~~~~~~-~~~~~~~v~~Ll~~i~~~~~~~~~~~y~~~~~~~~~ 223 (247)
T 3lxw_A 172 VAECGGRVCAFDNRAT-GREQEAQVEQLLGMVEGLVLEHKGAHYSNEVYELAQ 223 (247)
T ss_dssp HHHTTTCEEECCTTCC-HHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred HHHcCCeEEEEeCCCC-ccccHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 9999999999998764 456689999999999999999999999999998753
No 2
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=215.77 Aligned_cols=204 Identities=36% Similarity=0.657 Sum_probs=149.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
....++|+|+|.+|+|||||+|+|++...........++|..+....+.+ .+..+.||||||+.+......+..+.+..
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 45679999999999999999999999887555443446788888888888 88899999999999887777778888888
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
++..+.+++|++|+|+|+. +++..+...+..+.+.++.....|+++|+||+|..... .+++++.. ....++++++.
T Consensus 105 ~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~i~~-~~~~l~~l~~~ 180 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDT--NLHDYLRE-APEDIQDLMDI 180 (239)
T ss_dssp HHHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------------CHHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcc--cHHHHHHh-chHHHHHHHHH
Confidence 8888889999999999997 77778888888888888776667999999999987664 67777665 34568999999
Q ss_pred cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCCCHHHHhhcC
Q 036158 176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 225 (225)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 225 (225)
|+.+++.|++... +++...++.+|++.+.+++.++++.+|++++|++++
T Consensus 181 ~~~~~~~~~~~~~-~~~~~~~v~~ll~~i~~~~~~~~g~~~~~~~~~~~e 229 (239)
T 3lxx_A 181 FGDRYCALNNKAT-GAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAE 229 (239)
T ss_dssp HSSSEEECCTTCC-HHHHHHHHHHHHHHHHHHHHHCTTSCC---------
T ss_pred cCCEEEEEECCCC-ccccHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Confidence 9999999988753 446678999999999999999999999999998763
No 3
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.97 E-value=3.2e-28 Score=193.14 Aligned_cols=204 Identities=31% Similarity=0.561 Sum_probs=164.4
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
+..+.++|+|+|++|+|||||+|+|++...+.....+.++|..+....+.+ .+..+.||||||+.++........+.+.
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 445679999999999999999999999886655444444677777777777 7889999999999987766666666777
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEe-cCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFT-GGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~-k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
..+..+.+.+|++|+|+|+. +++..+...++++.+.++.+...|+++|+| |+|.... .+..++.......+++++
T Consensus 97 ~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~ 172 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG---SLMDYMHDSDNKALSKLV 172 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC---CHHHHHHHCCCHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc---cHHHHHHhcchHHHHHHH
Confidence 77777788999999999998 588888888899999887765578888888 9998743 566666654556678899
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCCCHHHHhhc
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAEL 224 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~~~~~~~~~ 224 (225)
+.|+.++..|.+ .+.||..+.++++|++.|.+++.++.+.+|.++++.+.
T Consensus 173 ~~~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~ 222 (260)
T 2xtp_A 173 AACGGRICAFNN-RAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLI 222 (260)
T ss_dssp HHTTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHC
T ss_pred HHhCCeEEEecC-cccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHH
Confidence 999988876766 78889999999999999999999988778887777553
No 4
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.90 E-value=1.7e-22 Score=160.47 Aligned_cols=191 Identities=19% Similarity=0.268 Sum_probs=135.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
.+.++|+++|.+|+|||||+|+|++...... ....++|.......+.+ ++..+.||||||+.++....+...+.+.++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRV-SPFQAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCC-CSSCC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCccc-CCCCCcceeeEEEEEEE-CCeeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 4679999999999999999999999875433 23455666777777777 788999999999988766666666666665
Q ss_pred HhhcCCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRN-RFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
+ ...++|++++|++++. +++..+..+++.+.+.++.+...|+++|+||+|.........++++.+ ....++++++.
T Consensus 112 l--~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~-~~~~l~~~i~~ 188 (262)
T 3def_A 112 L--VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK-RSDSLLKTIRA 188 (262)
T ss_dssp T--TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH-HHHHHHHHHHH
T ss_pred H--hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh-hhHHHHHHHHH
Confidence 5 3457899999988763 466777789999999888776679999999999875554577777655 33446666666
Q ss_pred cC-----------CcEEEeeCCCccccccHH----------HHHHHHHHHHHHHHHcCC
Q 036158 176 CD-----------NRCVLFDNKTKDTAKRTE----------QVGKLLSLVNSVIVQNGG 213 (225)
Q Consensus 176 ~~-----------~~~~~~~~~~~~~~~~~~----------~v~~l~~~i~~~~~~~~~ 213 (225)
+. .++.++.+..... .+.. -+..|+..|.+++.....
T Consensus 189 ~~~~~~~~~~~~~~pv~~ve~~~~~~-~n~~g~~~lp~~~~w~~~~~~~~~~~~~~~~~ 246 (262)
T 3def_A 189 GSKMRKQEFEDSAIAVVYAENSGRCS-KNDKDEKALPNGEAWIPNLVKAITDVATNQRK 246 (262)
T ss_dssp HHTCCHHHHHHHCCEEEECCCCTTCC-BCTTSCBBCTTSCBSCC-CHHHHHHHHTSCSC
T ss_pred HhCccccccccccCCEEEEeCCCCCC-CCCCCCeECCCCCeeHHHHHHHHHHHHhCCCC
Confidence 54 3444454442221 1111 356777878777765443
No 5
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.89 E-value=1e-21 Score=156.59 Aligned_cols=200 Identities=20% Similarity=0.297 Sum_probs=136.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
...++|+++|.+|+|||||+|+|++....... ...++|..+....+.. .+..+.||||||+.++..........+..+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSIS-PFQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCcceeeEEEEEee-CCeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 45799999999999999999999988754332 2445565555556666 788999999999987654444444444443
Q ss_pred HhhcCCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRN-RFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
+ ....+|+++||++++. +++..+..+++.+.+.++.+...|+++|+||+|..+.....++++..+ ....+++.++.
T Consensus 115 ~--~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~-~~~~l~~~~~~ 191 (270)
T 1h65_A 115 L--LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQVVRS 191 (270)
T ss_dssp T--TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHHHHH
T ss_pred h--hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHHH-HHHHHHHHHHH
Confidence 2 3457899999988763 577777788898988887665679999999999876544467776654 23334444432
Q ss_pred c----------CCcEEEeeCCCcc--c----c---ccHHHHHHHHHHHHHHHHHcCCCCCC-HHHH
Q 036158 176 C----------DNRCVLFDNKTKD--T----A---KRTEQVGKLLSLVNSVIVQNGGQPYT-DEIF 221 (225)
Q Consensus 176 ~----------~~~~~~~~~~~~~--~----~---~~~~~v~~l~~~i~~~~~~~~~~~~~-~~~~ 221 (225)
. ..++.+..+.... . . .......+|++.|.+++...+..... +.+.
T Consensus 192 ~~~~~~~~~~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~Ll~~l~~~~~~~~~~l~~d~~~~ 257 (270)
T 1h65_A 192 GASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVDKNLI 257 (270)
T ss_dssp HTTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSSSCCEECCHHHH
T ss_pred hhhhhhhhhhccCCEEEEeCCCcccccCCCceECCCCCCcHHHHHHHHHHHHhcCCCceecCHHHh
Confidence 1 1244444432110 0 0 11124669999999999999888765 3444
No 6
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.89 E-value=5.8e-22 Score=153.22 Aligned_cols=181 Identities=13% Similarity=0.177 Sum_probs=120.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcH--HHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE--FVSKEI 93 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~ 93 (225)
....++|+|+|.+|+|||||+|+|++..........+++|............+..+.||||||+.+...... +....+
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 345789999999999999999999998732233345566777666666533567999999999886543322 222222
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
..........+|++++|+|+.++++..+..+++++.+ ...|+++|+||+|+.... ........ +.+.+
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~-----~~~p~i~v~nK~Dl~~~~--~~~~~~~~-----~~~~l 173 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP-----TGKPIHSLLTKCDKLTRQ--ESINALRA-----TQKSL 173 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG-----GCCCEEEEEECGGGSCHH--HHHHHHHH-----HHHHH
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh-----cCCCEEEEEeccccCChh--hHHHHHHH-----HHHHH
Confidence 2222233456899999999987788777777777655 237999999999987543 33333333 34444
Q ss_pred HHc-----CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 174 QLC-----DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 174 ~~~-----~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
..+ ......+ ..|+.++.++++|++.|.+.+.+..
T Consensus 174 ~~~~~~~~~~~~~~~----~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 174 DAYRDAGYAGKLTVQ----LFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp HHHHHHTCCSCEEEE----EEBTTTTBSHHHHHHHHHHHHC---
T ss_pred HhhhhcccCCCCeEE----EeecCCCcCHHHHHHHHHHhcCccC
Confidence 432 2222222 3455677999999999999887654
No 7
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.88 E-value=4.4e-22 Score=161.51 Aligned_cols=178 Identities=14% Similarity=0.250 Sum_probs=125.0
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHH
Q 036158 14 SPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKD-GQVVNVIDTPGLFDSSADSEFVSKE 92 (225)
Q Consensus 14 ~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~ 92 (225)
++..+...|+++|.+|+|||||+|+|++...... ...+++|+......... + +..+.||||||+.+.. ......+.
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~-s~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~-~~~~l~~~ 81 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSII-SPKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPK-KSDVLGHS 81 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCC-CSSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCC-TTCHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCcccc-CCCCCceeeEEEEEEec-CCCCeEEEEECcCCCccc-cchhHHHH
Confidence 4456778999999999999999999999886543 33556677666666666 5 8899999999998754 22345555
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158 93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAA-IHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 171 (225)
Q Consensus 93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (225)
+...+..+...+|++++|+|+.++.+..+... ++.+.. ...|+++|+||+|..... ....+.. ..
T Consensus 82 ~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~~~~-~~~~~~~--------~~ 147 (308)
T 3iev_A 82 MVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-----LNKPVIVVINKIDKIGPA-KNVLPLI--------DE 147 (308)
T ss_dssp HHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-----GCCCEEEEEECGGGSSSG-GGGHHHH--------HH
T ss_pred HHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-----cCCCEEEEEECccCCCCH-HHHHHHH--------HH
Confidence 66666666678899999999987777777665 555443 247999999999987322 2333332 33
Q ss_pred HHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 172 ILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
+.+.++.. ....+.||.++.++++|++.|.+.+.+..
T Consensus 148 l~~~~~~~----~~i~~vSA~~g~gv~~L~~~l~~~l~~~~ 184 (308)
T 3iev_A 148 IHKKHPEL----TEIVPISALKGANLDELVKTILKYLPEGE 184 (308)
T ss_dssp HHHHCTTC----CCEEECBTTTTBSHHHHHHHHHHHSCBCC
T ss_pred HHHhccCC----CeEEEEeCCCCCCHHHHHHHHHHhCccCC
Confidence 33444321 12234566778999999999999887643
No 8
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.87 E-value=1.4e-21 Score=157.93 Aligned_cols=168 Identities=17% Similarity=0.156 Sum_probs=118.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
...+|+++|.+|+|||||+|+|++....... ..+++|+......... ++..+.||||||+.+.. ..+.+.+....
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs-~~~~tTr~~i~~i~~~-~~~~l~l~DTpG~~~~~---~~l~~~~~~~~ 80 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPIS-PRPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPM---DALGEFMDQEV 80 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCC---SHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeec-CCCCceeEEEEEEEEe-CCcEEEEecCccccchh---hHHHHHHHHHH
Confidence 4568999999999999999999998865432 2344555544444444 77899999999998643 23444566666
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCccc-HHHHhhhcCCchHHHHHHHc
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDET-LEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 176 (225)
..++..+|++++|+|++++++..+..+++.+.+... ..|+++|+||+|+.... . +.+.. +++ +
T Consensus 81 ~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~---~~p~ilV~NK~Dl~~~~--~~~~~~~--------~~~---~ 144 (301)
T 1wf3_A 81 YEALADVNAVVWVVDLRHPPTPEDELVARALKPLVG---KVPILLVGNKLDAAKYP--EEAMKAY--------HEL---L 144 (301)
T ss_dssp HHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTT---TSCEEEEEECGGGCSSH--HHHHHHH--------HHT---S
T ss_pred HHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcC---CCCEEEEEECcccCCch--HHHHHHH--------HHh---c
Confidence 677889999999999987788777666666655321 37999999999986542 2 22221 111 1
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
+ +....+.||.++.++++|++.|.+.+.+.
T Consensus 145 ~-----~~~~~~iSA~~g~gv~~l~~~l~~~l~~~ 174 (301)
T 1wf3_A 145 P-----EAEPRMLSALDERQVAELKADLLALMPEG 174 (301)
T ss_dssp T-----TSEEEECCTTCHHHHHHHHHHHHTTCCBC
T ss_pred C-----cCcEEEEeCCCCCCHHHHHHHHHHhcccC
Confidence 1 11234567788899999999998776543
No 9
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.87 E-value=1.7e-20 Score=141.64 Aligned_cols=173 Identities=16% Similarity=0.234 Sum_probs=115.4
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcH--HHHHH
Q 036158 15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE--FVSKE 92 (225)
Q Consensus 15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~ 92 (225)
+....++|+|+|.+|+|||||+|+|++.... ......+.|....... .+..+.+|||||+........ +....
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYL----VNSKYYFVDLPGYGYAKVSKKERMLWKR 93 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEE----ETTTEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEE----ECCcEEEEECCCCccccCChhhHHHHHH
Confidence 3456789999999999999999999988732 2233444455444332 245789999999876543322 22223
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158 93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 172 (225)
Q Consensus 93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~ 172 (225)
+..........+|++++|+|+....+..+...++++... ..|+++|+||+|+.... .......+ +++.
T Consensus 94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~~~--~~~~~~~~-----~~~~ 161 (195)
T 3pqc_A 94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVKMS--ERAKKLEE-----HRKV 161 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCGG--GHHHHHHH-----HHHH
T ss_pred HHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCChH--HHHHHHHH-----HHHH
Confidence 333333334577999999999877777777777777664 37999999999987543 44444444 4555
Q ss_pred HHHcC-CcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 173 LQLCD-NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 173 ~~~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
....+ .+++ ..|+.++.+++++++.|.+.+.+
T Consensus 162 ~~~~~~~~~~------~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 162 FSKYGEYTII------PTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp HHSSCCSCEE------ECCTTTCTTHHHHHHHHHHHHC-
T ss_pred HhhcCCCceE------EEecCCCCCHHHHHHHHHHHhhc
Confidence 54433 2222 34556679999999999988765
No 10
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.87 E-value=1.5e-20 Score=142.09 Aligned_cols=172 Identities=16% Similarity=0.261 Sum_probs=106.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcH--HHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE--FVSKEI 93 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~ 93 (225)
....++|+|+|.+|+|||||+|+|++..........++.|....... . +..+.+|||||+.+...... +....+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--I--NDELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--E--TTTEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--E--CCcEEEEECCCCCccccCHHHHHHHHHH
Confidence 34679999999999999999999998763322233444555544433 2 34799999999887654332 112222
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
..........+|++++|+|+.++.+..+.++++++.+ ...|+++|+||+|..... .......+ +++.+
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~p~i~v~nK~Dl~~~~--~~~~~~~~-----~~~~~ 163 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-----YGIPVIVIATKADKIPKG--KWDKHAKV-----VRQTL 163 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGGSCGG--GHHHHHHH-----HHHHH
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEECcccCChH--HHHHHHHH-----HHHHH
Confidence 2222223346699999999987788777777777665 237999999999987643 34333333 33323
Q ss_pred HH-cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 174 QL-CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 174 ~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
.. .+.+++ ..|+.++.++++|++.|.+.++
T Consensus 164 ~~~~~~~~~------~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 164 NIDPEDELI------LFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TCCTTSEEE------ECCTTTCTTHHHHHHHHHHHHT
T ss_pred cccCCCceE------EEEccCCCCHHHHHHHHHHHhc
Confidence 21 122222 3455667899999999987664
No 11
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.84 E-value=6.3e-20 Score=136.56 Aligned_cols=168 Identities=16% Similarity=0.198 Sum_probs=107.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
...++|+++|.+|+|||||+|+|++...... ..++.|.......+.+ ++..+.+|||||.......
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~----------- 71 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQ--EAGGITQHIGAYQVTV-NDKKITFLDTPGHEAFTTM----------- 71 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCS--SCCSSSTTCCCCEEEE-TTEEEEESCCCSSSSSSCS-----------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccC--CCCceeEeeeEEEEEe-CCceEEEEECCCCHHHHHH-----------
Confidence 4568999999999999999999998765322 1233333443445556 7788999999998765321
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
.......+|++++|+|++++......+.+..+. . ...|+++|+||+|+.............+ ...+.+.+
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~---~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~ 141 (178)
T 2lkc_A 72 RARGAQVTDIVILVVAADDGVMPQTVEAINHAK---A--ANVPIIVAINKMDKPEANPDRVMQELME-----YNLVPEEW 141 (178)
T ss_dssp CCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHG---G--GSCCEEEEEETTTSSCSCHHHHHHHHTT-----TTCCBTTT
T ss_pred HHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHH---h--CCCCEEEEEECccCCcCCHHHHHHHHHh-----cCcChhHc
Confidence 124567889999999997665555544443332 2 2479999999999875421122221111 00011111
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
+..+..+ ..|+.++.++++|++.|.+.+....
T Consensus 142 ~~~~~~~----~~Sa~~~~gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 142 GGDTIFC----KLSAKTKEGLDHLLEMILLVSEMEE 173 (178)
T ss_dssp TSSEEEE----ECCSSSSHHHHHHHHHHHHHHHHTT
T ss_pred CCcccEE----EEecCCCCCHHHHHHHHHHhhhhhc
Confidence 2112222 3466777999999999998877654
No 12
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.84 E-value=2.8e-19 Score=138.82 Aligned_cols=181 Identities=15% Similarity=0.117 Sum_probs=107.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
....++|+|+|.+|+|||||+|+|++.... . ......|.........+ .+..+.||||||+.+.......... ..
T Consensus 26 ~~~~~kI~vvG~~~vGKSsLin~l~~~~~~-~-~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~--~~ 100 (228)
T 2qu8_A 26 NPHKKTIILSGAPNVGKSSFMNIVSRANVD-V-QSYSFTTKNLYVGHFDH-KLNKYQIIDTPGLLDRAFENRNTIE--MT 100 (228)
T ss_dssp CTTSEEEEEECSTTSSHHHHHHHHTTTCEE-E-ECC-----CEEEEEEEE-TTEEEEEEECTTTTTSCGGGCCHHH--HH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCc-c-CCCCCcceeeeeeeeec-CCCeEEEEECCCCcCcccchhhhHH--HH
Confidence 356799999999999999999999988753 2 22345566666666666 6789999999999754211111110 01
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
.+......+|++|+|+|++++.+........++..+.......|+++|+||+|+....... .+.... +.++...
T Consensus 101 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~-----~~~~~~~ 174 (228)
T 2qu8_A 101 TITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLS-IDNKLL-----IKQILDN 174 (228)
T ss_dssp HHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCC-HHHHHH-----HHHHHHH
T ss_pred HHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhH-HHHHHH-----HHHHHHh
Confidence 1112245679999999997554422222333444332221247999999999987543111 111111 3444444
Q ss_pred cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
.+..+..+ ..|+.++.+++++++.|.+.+.+.
T Consensus 175 ~~~~~~~~----~~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 175 VKNPIKFS----SFSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp CCSCEEEE----ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred cCCCceEE----EEecccCCCHHHHHHHHHHHHHHH
Confidence 44112222 345667799999999998877654
No 13
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.84 E-value=2.4e-20 Score=148.93 Aligned_cols=173 Identities=18% Similarity=0.264 Sum_probs=100.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCC----CCceeEEEEEEEEee-CC--ceEEEEeCCCCCCCCCCcH---
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGS----SGVTKTCEMQRTMLK-DG--QVVNVIDTPGLFDSSADSE--- 87 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~----~~~t~~~~~~~~~~~-~~--~~~~liDtPG~~~~~~~~~--- 87 (225)
..++|+|+|.+|+|||||+|+|++...+...... ...|.........+. ++ ..+.||||||+++......
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 4689999999999999999999998876543210 122333333333321 33 2899999999987643322
Q ss_pred HHH----HHHHHHHhh---------cCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158 88 FVS----KEIVKCIGM---------TKDGIHAVLVVFSVR-NRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN 153 (225)
Q Consensus 88 ~~~----~~~~~~~~~---------~~~~~~~ii~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~ 153 (225)
.+. .++..++.. ...++|+++++++.. ..+...+.++++.+.. ..|+++|+||+|.....
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCCHH
Confidence 111 111222221 234578999998654 4678888777776654 38999999999987543
Q ss_pred cccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 154 DETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
....+..+ +.+.+..++.+++.+ ++..+.+++++.+.|.++++
T Consensus 161 --e~~~~~~~-----i~~~l~~~~i~v~~~------sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 161 --ECQQFKKQ-----IMKEIQEHKIKIYEF------PETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp --HHHHHHHH-----HHHHHHHTTCCCCCC-----------------CHHHHHTCS
T ss_pred --HHHHHHHH-----HHHHHHHcCCeEEcC------CCCCChhHHHHHHHHhcCCC
Confidence 45555444 666677777664444 34556889999998877653
No 14
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.83 E-value=1.5e-20 Score=159.44 Aligned_cols=167 Identities=19% Similarity=0.271 Sum_probs=112.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (225)
++|+++|.+|+|||||+|+|++.....+ ...+++|++.....+.+ ++..+.||||||+.... .+.....+...+..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v-~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~ 77 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIV-EDEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNP--QDIISQKMKEVTLN 77 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSG--GGCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcee-cCCCCCccceeeEEEEE-CCeEEEEEECCCccccc--cchHHHHHHHHHHH
Confidence 5799999999999999999998875433 34677888888888888 88899999999987431 11223345555556
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158 100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 179 (225)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (225)
++..+|++|+|+|+..+++..+..+.+++++. .+|+++|+||+|.... ..... ..+.. ..+.
T Consensus 78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~-----~~p~ilv~NK~D~~~~----~~~~~-------~~~~~-~lg~- 139 (439)
T 1mky_A 78 MIREADLVLFVVDGKRGITKEDESLADFLRKS-----TVDTILVANKAENLRE----FEREV-------KPELY-SLGF- 139 (439)
T ss_dssp HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-----TCCEEEEEESCCSHHH----HHHHT-------HHHHG-GGSS-
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCccc----cHHHH-------HHHHH-hcCC-
Confidence 67788999999999878888887777777652 3899999999996421 01100 02221 2232
Q ss_pred EEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 180 CVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 180 ~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
....+.||.++.++.+|++.|.+.+.+..
T Consensus 140 ----~~~~~iSA~~g~gv~~L~~~i~~~l~~~~ 168 (439)
T 1mky_A 140 ----GEPIPVSAEHNINLDTMLETIIKKLEEKG 168 (439)
T ss_dssp ----CSCEECBTTTTBSHHHHHHHHHHHHHHTT
T ss_pred ----CCEEEEeccCCCCHHHHHHHHHHhccccc
Confidence 22345688889999999999998887643
No 15
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.83 E-value=7.2e-20 Score=133.97 Aligned_cols=158 Identities=22% Similarity=0.257 Sum_probs=104.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (225)
++|+++|.+|+|||||+|++.+...... ...++.|.......+.+ ++..+.+|||||...... ....+...+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~----~~~~~~~~~~~ 75 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVV-ADVPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGDK----WEKKIQEKVDR 75 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEE-TTEEEEEEECGGGCSSSS----CCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeec-cCCCCceecceEEEEEe-CCceEEEEECCCCCCccc----hHHHHHHHHHH
Confidence 6899999999999999999998764222 23445566666666776 778999999999886432 12233344445
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158 100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 179 (225)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (225)
....+|++++|+|+.++++..+..+.+++.+. ..|+++|+||+|..... +. ..++. ..+.
T Consensus 76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~-----~~--------~~~~~-~~~~- 135 (161)
T 2dyk_A 76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRRK-----GKPVILVATKVDDPKHE-----LY--------LGPLY-GLGF- 135 (161)
T ss_dssp HTTTCSEEEEEEESSSCCCHHHHHHHHHHHHH-----TCCEEEEEECCCSGGGG-----GG--------CGGGG-GGSS-
T ss_pred HHHhCCEEEEEEECCCcccHhHHHHHHHHHhc-----CCCEEEEEECcccccch-----Hh--------HHHHH-hCCC-
Confidence 56788999999999877777776666666652 37999999999976431 11 11111 2232
Q ss_pred EEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158 180 CVLFDNKTKDTAKRTEQVGKLLSLVNSV 207 (225)
Q Consensus 180 ~~~~~~~~~~~~~~~~~v~~l~~~i~~~ 207 (225)
......|+.++.+++++++.+.+.
T Consensus 136 ----~~~~~~Sa~~~~gv~~l~~~l~~~ 159 (161)
T 2dyk_A 136 ----GDPIPTSSEHARGLEELLEAIWER 159 (161)
T ss_dssp ----CSCEECBTTTTBSHHHHHHHHHHH
T ss_pred ----CCeEEEecccCCChHHHHHHHHHh
Confidence 123455677789999999998764
No 16
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.83 E-value=3.1e-19 Score=134.45 Aligned_cols=170 Identities=13% Similarity=0.061 Sum_probs=105.4
Q ss_pred CCCCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHH
Q 036158 12 PTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVS 90 (225)
Q Consensus 12 ~~~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~ 90 (225)
........++|+|+|.+|+|||||+|+|++........... +.......+... ....+.||||||.......
T Consensus 15 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----- 87 (189)
T 2gf9_A 15 VPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTV--GIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI----- 87 (189)
T ss_dssp CCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCC--CCEEEEEEEEETTEEEEEEEEECCSCCSSCCS-----
T ss_pred CCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCce--eEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh-----
Confidence 33444557899999999999999999999876432222222 222222333331 2347999999997754321
Q ss_pred HHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchH
Q 036158 91 KEIVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPL 169 (225)
Q Consensus 91 ~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~ 169 (225)
+..+...+|++|+|+|+.++.+... ..++..+..... ...|+++|+||+|+........+ ..
T Consensus 88 ------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~---------~~ 150 (189)
T 2gf9_A 88 ------TTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSW--DNAQVILVGNKCDLEDERVVPAE---------DG 150 (189)
T ss_dssp ------GGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHH---------HH
T ss_pred ------HHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccccccCCCHH---------HH
Confidence 2345668899999999974322221 223344443321 24799999999998654311111 13
Q ss_pred HHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 170 KEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
+++.+..+..++ ..|+.++.+++++++.|.+.+.++
T Consensus 151 ~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 151 RRLADDLGFEFF------EASAKENINVKQVFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHTCEEE------ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeEE------EEECCCCCCHHHHHHHHHHHHHHH
Confidence 445555554433 345566789999999998877654
No 17
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.82 E-value=7.9e-21 Score=155.72 Aligned_cols=176 Identities=16% Similarity=0.129 Sum_probs=113.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (225)
.+|+|+|.+|+|||||+|+|++..... ...+.+|..+....+.++++..+.|+||||+.+.......+...+.+.+.
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i--~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~- 235 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKI--ADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE- 235 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEE--SSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH-
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCcc--ccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHH-
Confidence 469999999999999999999876432 23455666666666777445899999999986433223334444444443
Q ss_pred cCCCccEEEEEEeCCC---CCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 100 TKDGIHAVLVVFSVRN---RFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 100 ~~~~~~~ii~v~~~~~---~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
.+|++|+|+|+.+ +-...+ ..++..+..+...-...|+++|+||+|+.... +. +.++.+.
T Consensus 236 ---~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~-----e~--------~~~l~~~ 299 (342)
T 1lnz_A 236 ---RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA-----EN--------LEAFKEK 299 (342)
T ss_dssp ---HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH-----HH--------HHHHHHH
T ss_pred ---hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH-----HH--------HHHHHHH
Confidence 3599999999974 222222 23444444432111358999999999976431 11 2333344
Q ss_pred cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC-CCCCH
Q 036158 176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG-QPYTD 218 (225)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~-~~~~~ 218 (225)
++.. ......|+.++.++++|++.|.+++.+... ..|.+
T Consensus 300 l~~~----~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~~~~y~~ 339 (342)
T 1lnz_A 300 LTDD----YPVFPISAVTREGLRELLFEVANQLENTPEFPLYDE 339 (342)
T ss_dssp CCSC----CCBCCCSSCCSSTTHHHHHHHHHHHTSCCCCCSSCS
T ss_pred hhcC----CCEEEEECCCCcCHHHHHHHHHHHHhhCccccCCCc
Confidence 3322 134456778889999999999999988765 34443
No 18
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.82 E-value=1.9e-20 Score=159.64 Aligned_cols=183 Identities=16% Similarity=0.210 Sum_probs=121.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCC---cHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSAD---SEFVSKE 92 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~---~~~~~~~ 92 (225)
....++|+++|.+|+|||||+|+|++...... ...+++|.+.....+.+ ++..+.||||||+.+.... .+.. ..
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~-~~~~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~-~~ 268 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIV-SNVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKY-SV 268 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEE-CC------CTTSEEEEE-TTEEEEETTGGGTTTBTTBCCCCSHH-HH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCcccc-CCCCCeEEEEEEEEEEE-CCceEEEEECCCCCcCcccchHHHHH-HH
Confidence 34578999999999999999999998764433 23456666665556666 7889999999998653311 1111 11
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158 93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 172 (225)
Q Consensus 93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~ 172 (225)
+. ...+...+|++|+|+|+..+++..+.+++..+.+. ..|+++|+||||+........+++.+. +++.
T Consensus 269 ~~--~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~-----~~~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~ 336 (456)
T 4dcu_A 269 LR--ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA-----GKAVVIVVNKWDAVDKDESTMKEFEEN-----IRDH 336 (456)
T ss_dssp HH--HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSCCCSSHHHHHHHH-----HHHH
T ss_pred HH--HHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHc-----CCCEEEEEEChhcCCCchHHHHHHHHH-----HHHh
Confidence 11 11233456999999999888888887777777652 379999999999886553344444433 4444
Q ss_pred HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCCCH
Q 036158 173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTD 218 (225)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~~~ 218 (225)
+...+.. .....||.++.++++|++.+.+...+......+.
T Consensus 337 ~~~~~~~-----~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~t~ 377 (456)
T 4dcu_A 337 FQFLDYA-----PILFMSALTKKRIHTLMPAIIKASENHSLRVQTN 377 (456)
T ss_dssp CGGGTTS-----CEEECCTTTCTTGGGHHHHHHHHHHHHTCCCCHH
T ss_pred cccCCCC-----CEEEEcCCCCcCHHHHHHHHHHHHHHhcccCCHH
Confidence 4332221 1234566778999999999999888876655443
No 19
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.82 E-value=1.7e-20 Score=159.07 Aligned_cols=182 Identities=16% Similarity=0.195 Sum_probs=114.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcH--HHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE--FVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~~ 94 (225)
...++|+++|.+|+|||||+|+|++...... ...+++|.+.....+.+ ++..+.||||||+.+.....+ +....+.
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~-~~~~gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIV-SNVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEE-C---------CCEEEEE-TTEEEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceee-cCCCCceeeeeEEEEEE-CCeEEEEEECCCcCcCccccchHHHHHHHH
Confidence 3568999999999999999999998875433 23556677666666777 788899999999865432111 1111111
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
. ..+...+|++++|+|+.++.+..+..++..+.+ ...|+++|+||||+........+++..+ +.+.+.
T Consensus 251 ~--~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~-----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~-----~~~~l~ 318 (436)
T 2hjg_A 251 A--LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE-----AGKAVVIVVNKWDAVDKDESTMKEFEEN-----IRDHFQ 318 (436)
T ss_dssp H--HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-----TTCEEEEEEECGGGSCCCTTHHHHHHHH-----HHHHCG
T ss_pred H--HHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHH-----cCCcEEEEEECccCCCcchHHHHHHHHH-----HHHhcc
Confidence 1 123345699999999987888777666555543 2489999999999876542233333333 333333
Q ss_pred HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCCC
Q 036158 175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYT 217 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~~ 217 (225)
....- .....||.++.++++|++.+.+...+.....-+
T Consensus 319 ~~~~~-----~~~~~SA~tg~~v~~l~~~i~~~~~~~~~~~~t 356 (436)
T 2hjg_A 319 FLDYA-----PILFMSALTKKRIHTLMPAIIKASENHSLRVQT 356 (436)
T ss_dssp GGTTS-----CEEECCTTTCTTGGGHHHHHHHHHHHHTCCCCH
T ss_pred cCCCC-----CEEEEecccCCCHHHHHHHHHHHHHHhhcCCCH
Confidence 22221 123456677899999999999888876654433
No 20
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.82 E-value=1.6e-18 Score=128.99 Aligned_cols=165 Identities=16% Similarity=0.167 Sum_probs=105.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI 93 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~ 93 (225)
....++|+|+|.+|+|||||+|+|++..... ...++.+.......+.+ ++ ..+.+|||||......
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~--------- 73 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSG--SYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRT--------- 73 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC-----CCTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSS---------
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCC--ccCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhh---------
Confidence 3456999999999999999999999877532 22344455555555666 55 5799999999654422
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
.+..+...+|++++|+|+.++.+... ...++..+.......|+++|+||+|.........++ ...+.
T Consensus 74 --~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~ 140 (181)
T 3tw8_B 74 --ITSTYYRGTHGVIVVYDVTSAESFVN--VKRWLHEINQNCDDVCRILVGNKNDDPERKVVETED---------AYKFA 140 (181)
T ss_dssp --CCGGGGTTCSEEEEEEETTCHHHHHH--HHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred --hHHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHH---------HHHHH
Confidence 12245678899999999975422222 222333322222247999999999976543111111 34444
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
...+.+++ ..|+.++.+++++++.|.+.+.+.
T Consensus 141 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (181)
T 3tw8_B 141 GQMGIQLF------ETSAKENVNVEEMFNCITELVLRA 172 (181)
T ss_dssp HHHTCCEE------ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHcCCeEE------EEECCCCCCHHHHHHHHHHHHHHH
Confidence 45555443 345566789999999998887664
No 21
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.82 E-value=1.6e-18 Score=131.23 Aligned_cols=173 Identities=13% Similarity=0.117 Sum_probs=105.6
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHH
Q 036158 13 TSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKE 92 (225)
Q Consensus 13 ~~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~ 92 (225)
.++....++|+|+|.+|+|||||+|+|++........ ..|.......+.. .+..+.||||||....
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~---~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~---------- 76 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHI---TATVGYNVETFEK-GRVAFTVFDMGGAKKF---------- 76 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSCCC----CC---CCCSSEEEEEEEE-TTEEEEEEEECCSGGG----------
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccccc---ccccceeEEEEEe-CCEEEEEEECCCCHhH----------
Confidence 4556788999999999999999999999887543111 2233344444555 7889999999997533
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc---------ccccEEEEEecCCCCCCCcccHHHHhhh
Q 036158 93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK---------ISDYMIVVFTGGDELEDNDETLEDYLGR 163 (225)
Q Consensus 93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~vv~~k~D~~~~~~~~~~~~~~~ 163 (225)
...+..++..+|++|+|+|+.++.+-.. ...++....... ...|+++|+||+|+.... ..+++...
T Consensus 77 -~~~~~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~ 151 (199)
T 4bas_A 77 -RGLWETYYDNIDAVIFVVDSSDHLRLCV--VKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK--TAAELVEI 151 (199)
T ss_dssp -GGGGGGGCTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC--CHHHHHHH
T ss_pred -HHHHHHHHhcCCEEEEEEECCcHHHHHH--HHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC--CHHHHHHH
Confidence 2333456778999999999985433222 223333332221 147999999999987653 33333322
Q ss_pred cCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158 164 ECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG 213 (225)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~ 213 (225)
. .+..+.+..+ +..+ ..|+.++.+++++++.|.+.+.+..+
T Consensus 152 -~--~~~~~~~~~~--~~~~----~~Sa~~g~gv~~l~~~l~~~~~~~~~ 192 (199)
T 4bas_A 152 -L--DLTTLMGDHP--FVIF----ASNGLKGTGVHEGFSWLQETASRQSG 192 (199)
T ss_dssp -H--THHHHHTTSC--EEEE----ECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred -h--cchhhccCCe--eEEE----EeeCCCccCHHHHHHHHHHHHHHHhc
Confidence 0 0111112222 2222 34566778999999999988877644
No 22
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.82 E-value=1.8e-18 Score=126.97 Aligned_cols=162 Identities=15% Similarity=0.126 Sum_probs=99.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
+.++|+++|.+|+|||||+|++++...... ...++.......+.+ ++. .+.+|||||..+.. .. ..
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~----~~---~~- 69 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEK---YDPTIEDFYRKEIEV-DSSPSVLEILDTAGTEQFA----SM---RD- 69 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSC---CCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH----HH---HH-
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCccc---CCCCcceeEEEEEEE-CCEEEEEEEEECCCchhhH----HH---HH-
Confidence 468999999999999999999997664322 122222222334444 443 58999999976441 11 11
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
.....+|++++|+|+.++.+... ...+..+.+... ....|+++|+||+|+........++ ..++..
T Consensus 70 ---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 136 (167)
T 1kao_A 70 ---LYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLESEREVSSSE---------GRALAE 136 (167)
T ss_dssp ---HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred ---HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcccccccCCHHH---------HHHHHH
Confidence 22335599999999974322221 223333433322 1247999999999976433111111 234444
Q ss_pred HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
..+.+++ ..|+.++.+++++++.|.+.+.+
T Consensus 137 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 137 EWGCPFM------ETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp HHTSCEE------EECTTCHHHHHHHHHHHHHHHHH
T ss_pred HhCCCEE------EecCCCCcCHHHHHHHHHHHHhh
Confidence 4454433 33566789999999999887765
No 23
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.81 E-value=1.8e-19 Score=143.85 Aligned_cols=167 Identities=16% Similarity=0.176 Sum_probs=111.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCc--HHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS--EFVSKEIVK 95 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~--~~~~~~~~~ 95 (225)
+.++|+++|.+|+|||||+|+|++... .. ...+++|.......+.+ .+..+.+|||||+.+..... ....+.+..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~-~v-~~~~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~ 78 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQ-RV-GNWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCE-EE-EECTTSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----CCHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCc-cc-CCCCCeeEEEEEEEEEe-CCCceEEEECcCCCccccccccCCHHHHHHH
Confidence 468999999999999999999999874 23 23567777777777777 67899999999998765211 112222222
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
.. .....+|++++|+|+.. . .....+...+.+. ..|+++|+||+|..... .. ......+.+.
T Consensus 79 ~~-~~~~~~d~ii~VvD~~~-~-~~~~~~~~~l~~~-----~~p~ivv~NK~Dl~~~~--~~--------~~~~~~l~~~ 140 (274)
T 3i8s_A 79 HY-ILSGDADLLINVVDASN-L-ERNLYLTLQLLEL-----GIPCIVALNMLDIAEKQ--NI--------RIEIDALSAR 140 (274)
T ss_dssp HH-HHHTCCSEEEEEEEGGG-H-HHHHHHHHHHHHH-----TCCEEEEEECHHHHHHT--TE--------EECHHHHHHH
T ss_pred HH-HhhcCCCEEEEEecCCC-h-HHHHHHHHHHHhc-----CCCEEEEEECccchhhh--hH--------HHHHHHHHHh
Confidence 21 22357899999999973 2 2233344444443 48999999999975432 11 1113444445
Q ss_pred cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
.+.+++ +.|+.++.++++|++.|.+.+...
T Consensus 141 lg~~~i------~~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 141 LGCPVI------PLVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp HTSCEE------ECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred cCCCEE------EEEcCCCCCHHHHHHHHHHHHhcC
Confidence 554433 345677899999999998776544
No 24
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.81 E-value=9.7e-20 Score=135.49 Aligned_cols=164 Identities=18% Similarity=0.183 Sum_probs=104.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
+..+|+++|.+|+|||||+|+|.+...... ...+++|.......+.+ ++..+.+|||||+.+.....+.. .+...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~-~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~--~~~~~~ 78 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIV-TDIAGTTRDVLREHIHI-DGMPLHIIDTAGLREASDEVERI--GIERAW 78 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCC-CSSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCSSHHHHH--HHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccee-eCCCCceeceeeEEEEE-CCeEEEEEECCCcccchhHHHHH--HHHHHH
Confidence 457999999999999999999998764222 22445565555566666 67789999999987542111110 111111
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
.++..+|++++|+|+.++.+.....++..+.+... ...|+++|+||+|+..... . +. + ..+
T Consensus 79 -~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~-~---~~-~-----------~~~ 139 (172)
T 2gj8_A 79 -QEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLP--AKLPITVVRNKADITGETL-G---MS-E-----------VNG 139 (172)
T ss_dssp -HHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSC--TTCCEEEEEECHHHHCCCC-E---EE-E-----------ETT
T ss_pred -HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcc--cCCCEEEEEECccCCcchh-h---hh-h-----------ccC
Confidence 23457899999999976655555556666655432 2379999999999743210 0 00 0 011
Q ss_pred CcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
.. ....||.++.++++|++.|.+.+..
T Consensus 140 --~~----~~~~SA~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 140 --HA----LIRLSARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp --EE----EEECCTTTCTTHHHHHHHHHHHC--
T ss_pred --Cc----eEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 11 2345677789999999999776544
No 25
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.81 E-value=9.9e-21 Score=161.35 Aligned_cols=169 Identities=19% Similarity=0.196 Sum_probs=106.6
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158 14 SPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI 93 (225)
Q Consensus 14 ~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (225)
.+.+..++|+|+|.+|+|||||+|+|++.....+ ...++.|.+.....+.+ .+..+.||||||+... .+...+.+
T Consensus 18 ~~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~-~~~~~~liDT~G~~~~---~~~~~~~~ 92 (456)
T 4dcu_A 18 GSHMGKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIG---DEPFLAQI 92 (456)
T ss_dssp -----CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTT-CSSCCEEECCCC---------CCHHHH
T ss_pred hhhcCCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEE-CCceEEEEECCCCCCc---chHHHHHH
Confidence 3345678999999999999999999998775433 34678888888888888 7889999999998733 22334556
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
...+..+...+|++|+|+|+..+++..+.++++.+.+ ..+|+++|+||+|..... ....++ +
T Consensus 93 ~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~-----~~~pvilV~NK~D~~~~~-~~~~e~--------~---- 154 (456)
T 4dcu_A 93 RQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTEMR-ANIYDF--------Y---- 154 (456)
T ss_dssp HHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT-----CCSCEEEEEECC----------CCS--------G----
T ss_pred HHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH-----cCCCEEEEEECccchhhh-hhHHHH--------H----
Confidence 6666666677899999999987888888877777754 248999999999976432 011111 1
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
..+. ......||.++.++.+|++.+.+.+.+.
T Consensus 155 -~lg~-----~~~~~iSA~~g~gv~~L~~~i~~~l~~~ 186 (456)
T 4dcu_A 155 -SLGF-----GEPYPISGTHGLGLGDLLDAVAEHFKNI 186 (456)
T ss_dssp -GGSS-----SSEEECCTTTCTTHHHHHHHHHTTGGGS
T ss_pred -HcCC-----CceEEeecccccchHHHHHHHHhhcccc
Confidence 0111 1122457778899999999998776543
No 26
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.81 E-value=1e-18 Score=128.93 Aligned_cols=163 Identities=11% Similarity=0.119 Sum_probs=100.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
...++|+|+|.+|+|||||+|++++...... ..+..+.......+.+ ++ ..+.+|||||..+. .
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~ 69 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDK--HITTLGASFLTKKLNI-GGKRVNLAIWDTAGQERF-----------H 69 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSS--CCCCCSCEEEEEEEES-SSCEEEEEEEECCCC---------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcC--CCCccceEEEEEEEEE-CCEEEEEEEEECCCcHhh-----------h
Confidence 4468999999999999999999997764222 1222233333334444 33 37889999996533 2
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
.........+|++++|+|+.++.+... ..++..+...... ..|+++|+||+|+........++ ..++.
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~---------~~~~~ 138 (170)
T 1z08_A 70 ALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN--EICLCIVGNKIDLEKERHVSIQE---------AESYA 138 (170)
T ss_dssp ---CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGG--GSEEEEEEECGGGGGGCCSCHHH---------HHHHH
T ss_pred hhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECcccccccccCHHH---------HHHHH
Confidence 233456778999999999974322222 2233444443322 37999999999986543112111 34455
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
+..+..++ ..|+.++.+++++++.|.+.+.+
T Consensus 139 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 139 ESVGAKHY------HTSAKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp HHTTCEEE------EEBTTTTBSHHHHHHHHHHHHHC
T ss_pred HHcCCeEE------EecCCCCCCHHHHHHHHHHHHhh
Confidence 55565443 34556778999999999877653
No 27
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.81 E-value=1.7e-18 Score=131.71 Aligned_cols=169 Identities=17% Similarity=0.146 Sum_probs=101.5
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEe-eCCceEEEEeCCCCCCCCCCcHHHHHH
Q 036158 14 SPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTML-KDGQVVNVIDTPGLFDSSADSEFVSKE 92 (225)
Q Consensus 14 ~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~ 92 (225)
.+....++|+|+|.+|+|||||+|+|++...... ...++.........+ .....+.||||||..+....
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------- 88 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEG---YDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL------- 88 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSC---CCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCC-------
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCC---CCCccceEEEEEEEECCEEEEEEEEECCCccchHHH-------
Confidence 3456789999999999999999999998764322 112222221222222 13457899999998765322
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHH
Q 036158 93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 170 (225)
Q Consensus 93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~ 170 (225)
+..+...+|++++|+|+.++.+. .....++..+... ....|+++|+||+|+.........+ ..
T Consensus 89 ----~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~---------~~ 153 (201)
T 3oes_A 89 ----PYSFIIGVHGYVLVYSVTSLHSF--QVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVE---------GK 153 (201)
T ss_dssp ----CGGGTTTCCEEEEEEETTCHHHH--HHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHH---------HH
T ss_pred ----HHHHHhcCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHH---------HH
Confidence 22456688999999999743221 1222333333222 1247999999999976443111111 23
Q ss_pred HHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158 171 EILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG 213 (225)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~ 213 (225)
++....+..++ ..|+.++.+++++++.|.+.+.+...
T Consensus 154 ~~~~~~~~~~~------~~Sa~~~~~v~~l~~~l~~~i~~~~~ 190 (201)
T 3oes_A 154 KLAESWGATFM------ESSARENQLTQGIFTKVIQEIARVEN 190 (201)
T ss_dssp HHHHHHTCEEE------ECCTTCHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHhCCeEE------EEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence 44455554332 34667789999999999988877643
No 28
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.81 E-value=1.4e-18 Score=129.96 Aligned_cols=165 Identities=18% Similarity=0.154 Sum_probs=101.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI 93 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~ 93 (225)
..+.++|+|+|.+|+|||||+|+|++...... ...++.......+.+ ++ ..+.||||||..+.. .. +
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----~~---~ 83 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVED---YEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDYA----AI---R 83 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCS---CCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH----HH---H
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCc---CCCccceEEEEEEEE-CCEEEEEEEEECCCCcccH----HH---H
Confidence 45679999999999999999999997764221 222222333333444 44 378999999976431 11 1
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 172 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~ 172 (225)
. .+...+|++++|+|+.+..+... ..++..+..... ....|+++|+||+|+........++ ++++
T Consensus 84 ~----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~ 149 (187)
T 2a9k_A 84 D----NYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEE---------AKNR 149 (187)
T ss_dssp H----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTCCEEEEEECGGGGGGCCSCHHH---------HHHH
T ss_pred H----HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccCccCHHH---------HHHH
Confidence 1 22335699999999974322111 233344444332 1247999999999976543111111 3445
Q ss_pred HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
.+..+.+++ ..|+.++.+++++++.|.+.+.++
T Consensus 150 ~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~~ 182 (187)
T 2a9k_A 150 AEQWNVNYV------ETSAKTRANVDKVFFDLMREIRAR 182 (187)
T ss_dssp HHHTTCEEE------ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHcCCeEE------EeCCCCCCCHHHHHHHHHHHHHHh
Confidence 555565433 234556689999999998877654
No 29
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.81 E-value=1e-18 Score=128.97 Aligned_cols=164 Identities=13% Similarity=0.117 Sum_probs=105.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
..+.++|+++|.+|+|||||+|+|.+..... ...|.......+.+ ++..+.+|||||.... ..
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~-----------~~ 66 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVVT-----TIPTIGFNVETVTY-KNLKFQVWDLGGLTSI-----------RP 66 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCCC-----CCCCSSEEEEEEEE-TTEEEEEEEECCCGGG-----------GG
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCC-----cCCcCccceEEEEE-CCEEEEEEECCCChhh-----------hH
Confidence 3566999999999999999999998766421 12233444556666 6889999999997532 22
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
.+..+...+|++++|+|+.++.+-.. ...++....... ...|+++|+||+|+.... ..++.... +. .
T Consensus 67 ~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~-----~~--~ 135 (171)
T 1upt_A 67 YWRCYYSNTDAVIYVVDSCDRDRIGI--SKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSSEMANS-----LG--L 135 (171)
T ss_dssp GGGGGCTTCSEEEEEEETTCCTTHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHH-----HT--G
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--CHHHHHHH-----hC--c
Confidence 33456678999999999975533222 223333333221 347999999999987653 22222211 00 0
Q ss_pred HHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 174 QLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 174 ~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
..+.. .+.. ...|+.++.+++++++.|.+.+.+.
T Consensus 136 ~~~~~~~~~~----~~~Sa~~~~gi~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 136 PALKDRKWQI----FKTSATKGTGLDEAMEWLVETLKSR 170 (171)
T ss_dssp GGCTTSCEEE----EECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred hhccCCceEE----EECcCCCCcCHHHHHHHHHHHHhhc
Confidence 11111 1222 2456677799999999998887654
No 30
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.81 E-value=3.1e-18 Score=129.37 Aligned_cols=166 Identities=18% Similarity=0.152 Sum_probs=107.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
...++|+|+|.+|+|||||+|+|++...... ..+..+.......+.+ ++ ..+.||||||......
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~---------- 80 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTES--YISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRT---------- 80 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSC--CCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGCT----------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCC--CCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhhh----------
Confidence 4568999999999999999999997764322 2344455555555666 44 4799999999654321
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
.+..+...+|++|+|+|+.++.+.. ...++..+...... ..|+++|+||+|+........+ ...++.
T Consensus 81 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~---------~~~~~~ 148 (196)
T 3tkl_A 81 -ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTKKVVDYT---------TAKEFA 148 (196)
T ss_dssp -THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCCSCHH---------HHHHHH
T ss_pred -hHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccccccccCHH---------HHHHHH
Confidence 1123445789999999997432211 12344444443322 4799999999998755311111 134455
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG 213 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~ 213 (225)
...+.+++. .|+.++.+++++++.|.+.+.+...
T Consensus 149 ~~~~~~~~~------~Sa~~g~gv~~l~~~l~~~i~~~~~ 182 (196)
T 3tkl_A 149 DSLGIPFLE------TSAKNATNVEQSFMTMAAEIKKRMG 182 (196)
T ss_dssp HHTTCCEEE------ECTTTCTTHHHHHHHHHHHHHHHC-
T ss_pred HHcCCcEEE------EeCCCCCCHHHHHHHHHHHHHHHhc
Confidence 555655443 3555678999999999988877643
No 31
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.81 E-value=3e-19 Score=141.13 Aligned_cols=161 Identities=15% Similarity=0.163 Sum_probs=105.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcH--HHHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE--FVSKEIVKCI 97 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~~~~~ 97 (225)
++|+++|.+|+|||||+|+|+|.... . ...+++|.+.....+.+ ++..+.||||||+.+...... ...+.+....
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~-v-~~~pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQR-V-GNWPGVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEE-E-EECTTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC-c-cCCCCceEEEEEEEEEE-CCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 58999999999999999999998743 2 23567777777777777 788999999999987653210 1122222221
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
. ....+|++|+|+|+.. . .....+...+.+ ...|+++|+||+|..... . .......+.+..+
T Consensus 79 ~-~~~~~d~vi~VvDas~-~-~~~~~l~~~l~~-----~~~pvilv~NK~Dl~~~~--~--------~~~~~~~l~~~lg 140 (256)
T 3iby_A 79 V-IDLEYDCIINVIDACH-L-ERHLYLTSQLFE-----LGKPVVVALNMMDIAEHR--G--------ISIDTEKLESLLG 140 (256)
T ss_dssp H-HHSCCSEEEEEEEGGG-H-HHHHHHHHHHTT-----SCSCEEEEEECHHHHHHT--T--------CEECHHHHHHHHC
T ss_pred H-hhCCCCEEEEEeeCCC-c-hhHHHHHHHHHH-----cCCCEEEEEEChhcCCcC--C--------cHHHHHHHHHHcC
Confidence 1 1257899999999973 1 122223333322 248999999999975432 1 1111344444455
Q ss_pred CcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158 178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSV 207 (225)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~ 207 (225)
.+++ +.|+.++.++++|++.|.++
T Consensus 141 ~~vi------~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 141 CSVI------PIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp SCEE------ECBGGGTBSHHHHHHHHHTC
T ss_pred CCEE------EEECCCCCCHHHHHHHHHhh
Confidence 4433 45666779999999999887
No 32
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.80 E-value=3.6e-18 Score=127.49 Aligned_cols=167 Identities=16% Similarity=0.146 Sum_probs=102.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
.+.++|+++|.+|+|||||+|+|++...... ...++.......... ++ ..+.+|||||..++....
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~-------- 71 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDS---YDPTIENTFTKLITV-NGQEYHLQLVDTAGQDEYSIFP-------- 71 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSC---CCTTCCEEEEEEEEE-TTEEEEEEEEECCCCCTTCCCC--------
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCC---CCCCccccEEEEEEE-CCEEEEEEEEeCCCchhhhHHH--------
Confidence 3568999999999999999999996553222 122222222333444 45 367899999987653221
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
..+...+|++++|+|+.++.+... ..++..+.+... ....|+++|+||+|+........++ ..++.
T Consensus 72 ---~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~ 138 (181)
T 3t5g_A 72 ---QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG-KVQIPIMLVGNKKDLHMERVISYEE---------GKALA 138 (181)
T ss_dssp ---GGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCHHH---------HHHHH
T ss_pred ---HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhcceecHHH---------HHHHH
Confidence 235567899999999974322222 122333333222 1247999999999976443112221 34455
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCC
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQ 214 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~ 214 (225)
+..+..++ ..|+.++.+++++++.|.+.+.+..+.
T Consensus 139 ~~~~~~~~------~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 173 (181)
T 3t5g_A 139 ESWNAAFL------ESSAKENQTAVDVFRRIILEAEKMDGA 173 (181)
T ss_dssp HHTTCEEE------ECCTTSHHHHHHHHHHHHHHHHTC---
T ss_pred HHhCCcEE------EEecCCCCCHHHHHHHHHHHHHHhcCC
Confidence 55555433 345667899999999999988876553
No 33
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.80 E-value=4.3e-20 Score=156.57 Aligned_cols=164 Identities=19% Similarity=0.185 Sum_probs=104.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
.++|+++|.+|+|||||+|+|++.....+ ...+++|++.....+.+ .+..+.||||||+.... ......+...+.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~---~~~~~~~~~~~~ 77 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGD---EPFLAQIRQQAE 77 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTT-CSSCCEEEC------------CHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEE-CCceEEEEECCCCCCcc---hhHHHHHHHHHH
Confidence 37899999999999999999998775433 34677888888888888 78899999999987332 113445555555
Q ss_pred hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158 99 MTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 178 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (225)
.+...+|++|+|+|+..+++..+.++.+.+++ ..+|+++|+||+|..... ... .+.. ..+
T Consensus 78 ~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~~~-~~~--------~~~~-----~lg- 137 (436)
T 2hjg_A 78 IAMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTEMR-ANI--------YDFY-----SLG- 137 (436)
T ss_dssp HHHHHCSEEEEEEETTTCSCHHHHHHHHHHTT-----CCSCEEEEEECCCC------CC--------CSSG-----GGS-
T ss_pred HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCccch-hhH--------HHHH-----HcC-
Confidence 66667899999999987888877666665543 248999999999976432 010 1111 112
Q ss_pred cEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 179 RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
+....+.||.++.++.+|++.+.+.+.+.
T Consensus 138 ----~~~~~~iSA~~g~gv~~L~~~i~~~l~~~ 166 (436)
T 2hjg_A 138 ----FGEPYPISGTHGLGLGDLLDAVAEHFKNI 166 (436)
T ss_dssp ----SCCCEECBTTTTBTHHHHHHHHHHTGGGC
T ss_pred ----CCCeEEEeCcCCCChHHHHHHHHHhcCcc
Confidence 12334567888999999999998888653
No 34
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.80 E-value=5.3e-19 Score=131.43 Aligned_cols=164 Identities=16% Similarity=0.142 Sum_probs=99.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI 93 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~ 93 (225)
....++|+|+|.+|+|||||+|+|++........ +..+.......+.. ++ ..+.+|||||..... .
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~-------~-- 79 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCP--HTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFR-------A-- 79 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCT--TSCCCCEEEEEEEE-TTEEEEEEEEECTTGGGTC-------H--
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CccceEEEEEEEEE-CCeEEEEEEEECCCChHhh-------h--
Confidence 3457999999999999999999999876432222 22222222233333 33 478999999965432 1
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 172 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~ 172 (225)
.+..+...+|++++|+|+.++.+... ..++..+..... ...|+++|+||+|+........+ ..+++
T Consensus 80 --~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~---------~~~~~ 146 (179)
T 1z0f_A 80 --VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIILIGNKADLEAQRDVTYE---------EAKQF 146 (179)
T ss_dssp --HHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHH---------HHHHH
T ss_pred --hHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHH---------HHHHH
Confidence 11223346799999999975422222 223334444322 24789999999998643311111 13445
Q ss_pred HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
.+..+..++ ..|+.++.+++++++.|.+.+.+
T Consensus 147 ~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 147 AEENGLLFL------EASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp HHHTTCEEE------ECCTTTCTTHHHHHHHHHHHHC-
T ss_pred HHHcCCEEE------EEeCCCCCCHHHHHHHHHHHHhh
Confidence 555554433 23556678999999998876643
No 35
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=3.3e-18 Score=127.38 Aligned_cols=166 Identities=16% Similarity=0.117 Sum_probs=101.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
...++|+++|.+|+|||||+|+|++...... ...+..+.......+.. ++. .+.+|||||.... .
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~-----------~ 74 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAG-TFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERF-----------R 74 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCC-CCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC---------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCC-CcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHHH-----------H
Confidence 4568999999999999999999998764322 12233333333333444 443 7899999996533 2
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
..+..+...+|++++|+|+.++.+..+ ..++..+..... ...|+++|+||+|+........++ ..++.
T Consensus 75 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~ 143 (180)
T 2g6b_A 75 SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHERVVKRED---------GEKLA 143 (180)
T ss_dssp ----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSCCCSCHHH---------HHHHH
T ss_pred HHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCcccccCHHH---------HHHHH
Confidence 223455667899999999974432222 233444444332 247999999999987543111111 23344
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
+..+..++ ..|+.++.+++++++.|.+.+.++.
T Consensus 144 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 144 KEYGLPFM------ETSAKTGLNVDLAFTAIAKELKRRS 176 (180)
T ss_dssp HHHTCCEE------ECCTTTCTTHHHHHHHHHHHHHC--
T ss_pred HHcCCeEE------EEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 44454433 3455677899999999988876653
No 36
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.80 E-value=5.7e-19 Score=131.67 Aligned_cols=165 Identities=21% Similarity=0.185 Sum_probs=100.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKD-GQVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
....++|+|+|.+|+|||||+|+|++...........+.+ .....+.+.+ ...+.||||||.....
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------- 75 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAA--FFSQTLAVNDATVKFEIWDTAGQERYH----------- 75 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCS--EEEEEEEETTEEEEEEEEECCCSGGGG-----------
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeE--EEEEEEEECCEEEEEEEEeCCCChhhh-----------
Confidence 3556899999999999999999999876533222222222 2223333311 3479999999965321
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
..+......+|++|+|+|+.++.+.. ...++..+..... ...|+++|+||+|+........++ ++++.
T Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~---------~~~~~ 144 (181)
T 2efe_B 76 SLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN--PNMVMALAGNKSDLLDARKVTAED---------AQTYA 144 (181)
T ss_dssp GGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTCCSCHHH---------HHHHH
T ss_pred hhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccccccCCHHH---------HHHHH
Confidence 11223455789999999997443322 2233444443321 247899999999986543111111 34455
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
+..+.+++ ..|+.++.+++++++.|.+.+.+
T Consensus 145 ~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 145 QENGLFFM------ETSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp HHTTCEEE------ECCSSSCTTHHHHHHHHHHTCC-
T ss_pred HHcCCEEE------EEECCCCCCHHHHHHHHHHHHHh
Confidence 55554433 23556678999999999776644
No 37
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=3.1e-19 Score=134.88 Aligned_cols=167 Identities=17% Similarity=0.095 Sum_probs=100.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
....++|+|+|.+|+|||||+|+|++...........+.+.......+.. ....+.||||||..+.. .
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~ 87 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGN-ELHKFLIWDTAGQERFH-----------S 87 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSS-SEEEEEEEEECCSGGGG-----------G
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCC-EEEEEEEEcCCCchhhH-----------h
Confidence 35679999999999999999999998764322222333333333222221 34589999999965331 1
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
.+..+...+|++|+|+|+.++.+... ..++..+.+... ...|+++|+||+|+........++ .+++.+
T Consensus 88 ~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~~~~v~~~~---------~~~~~~ 156 (192)
T 2fg5_A 88 LAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGP--ENIVMAIAGNKCDLSDIREVPLKD---------AKEYAE 156 (192)
T ss_dssp GTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred hhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccccccccCHHH---------HHHHHH
Confidence 12234457799999999974422222 223334433321 247999999999986432111111 344555
Q ss_pred HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
..+..++ ..|+.++.+++++++.|.+.+.+.
T Consensus 157 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 157 SIGAIVV------ETSAKNAINIEELFQGISRQIPPL 187 (192)
T ss_dssp TTTCEEE------ECBTTTTBSHHHHHHHHHHTCC--
T ss_pred HcCCEEE------EEeCCCCcCHHHHHHHHHHHHHhh
Confidence 5554433 345566789999999998766543
No 38
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.80 E-value=3.8e-19 Score=131.15 Aligned_cols=163 Identities=16% Similarity=0.094 Sum_probs=99.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
...++|+++|.+|+|||||+|+|++...........+.+... ....+. ....+.+|||||+.... .
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Dt~G~~~~~-----------~ 70 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMT--KTVQYQNELHKFLIWDTAGLERFR-----------A 70 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEE--EEEEETTEEEEEEEEEECCSGGGG-----------G
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEE--EEEEECCeEEEEEEEcCCCchhhh-----------c
Confidence 346899999999999999999999877432222222323222 233331 22579999999975321 1
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
........+|++++|+|+.++.+... ..++..+..... ...|+++|.||+|.........+ ....+..
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~~~v~~~---------~~~~~~~ 139 (170)
T 1z0j_A 71 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP--PSIVVAIAGNKCDLTDVREVMER---------DAKDYAD 139 (170)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTSEEEEEEECTTCGGGCCSCHH---------HHHHHHH
T ss_pred ccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECCccccccccCHH---------HHHHHHH
Confidence 12234457799999999975433222 234444444311 24689999999998654311111 1334444
Q ss_pred HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
..+.+++ ..|+.++.+++++++.|.+.+.
T Consensus 140 ~~~~~~~------~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 140 SIHAIFV------ETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp HTTCEEE------ECBTTTTBSHHHHHHHHHHHCC
T ss_pred HcCCEEE------EEeCCCCcCHHHHHHHHHHHHh
Confidence 5554433 3455667899999999977653
No 39
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.80 E-value=3.1e-18 Score=125.74 Aligned_cols=163 Identities=18% Similarity=0.150 Sum_probs=98.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
.+.++|+++|.+|+|||||+|+|++...... ..+++.......+.+ ++ ..+.+|||||..+.. .
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~-------~--- 67 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVED---YEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDYA-------A--- 67 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSC---CCTTCCEEEEEEEEE-TTEEEEEEEEECCC---CH-------H---
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCC---CCCCcceEEEEEEEE-CCEEEEEEEEECCCcchhH-------H---
Confidence 3568999999999999999999997764222 222222222233444 44 378999999975431 1
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
.+..+...+|++++|+|+.++.+... ..++..+...... ...|+++|+||+|+........++ ..+..
T Consensus 68 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~ 136 (168)
T 1u8z_A 68 -IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVEE---------AKNRA 136 (168)
T ss_dssp -HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGGCCSCHHH---------HHHHH
T ss_pred -HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccccccCccCHHH---------HHHHH
Confidence 11222335699999999974322221 2333444443321 247999999999986543112221 34444
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
+..+.+++ ..|+.++.+++++++.+.+.+.+
T Consensus 137 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 137 DQWNVNYV------ETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp HHHTCEEE------ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHcCCeEE------EeCCCCCCCHHHHHHHHHHHHHh
Confidence 55554433 33555678999999999887654
No 40
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.80 E-value=5.2e-18 Score=128.59 Aligned_cols=161 Identities=15% Similarity=0.170 Sum_probs=99.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC----------------------------
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG---------------------------- 68 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~---------------------------- 68 (225)
...++|+|+|.+|+|||||+|+|++...... ..+..+.......+.+ ++
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHEN--TNTTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSS--CCCCCSCEEEEEEEET-TC----------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCC--cCccccceeEEEEEEe-cCcccccccccccccccccccccccccccc
Confidence 4569999999999999999999998764321 1222222333333333 22
Q ss_pred -----------ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccc
Q 036158 69 -----------QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKI 136 (225)
Q Consensus 69 -----------~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~ 136 (225)
..+.||||||...... ........+|++|+|+|+.++.+..+ ..++..+....
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---- 146 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYAS-----------IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---- 146 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTT-----------THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS----
T ss_pred ccccccCccceeEEEEEECCCcHHHHH-----------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC----
Confidence 6799999999664421 11223457799999999975432222 22233333321
Q ss_pred cccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 137 SDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 137 ~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
..|+++|+||+| ........++ ++++++..+.+++. .|+..+.+++++++.|.+.+.++
T Consensus 147 ~~piilv~NK~D-~~~~~~~~~~---------~~~~~~~~~~~~~~------~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 147 NYIIILVANKID-KNKFQVDILE---------VQKYAQDNNLLFIQ------TSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp CCEEEEEEECTT-CC-CCSCHHH---------HHHHHHHTTCEEEE------ECTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCC-cccccCCHHH---------HHHHHHHcCCcEEE------EecCCCCCHHHHHHHHHHHHHHh
Confidence 279999999999 4322112222 34555555654443 34556689999999998877654
No 41
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.80 E-value=4.1e-19 Score=130.86 Aligned_cols=162 Identities=15% Similarity=0.130 Sum_probs=97.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
..++|+++|.+|+|||||+|+|++...........+.+. ....+.+. ....+.+|||||..... ..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~G~~~~~-----------~~ 71 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAF--LTQTVCLDDTTVKFEIWDTAGQERYH-----------SL 71 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEE--EEEEEEETTEEEEEEEEEECCSGGGG-----------GG
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEE--EEEEEEECCEEEEEEEEeCCCcHHhh-----------hh
Confidence 468999999999999999999997664322222222222 22333331 23479999999965331 11
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
...+...+|++++|+|++++.+... ..++..+..... ...|+++|.||+|.........++ ..++...
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~Dl~~~~~~~~~~---------~~~~~~~ 140 (170)
T 1r2q_A 72 APMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSGNKADLANKRAVDFQE---------AQSYADD 140 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCccccccCHHH---------HHHHHHH
Confidence 2234557899999999974422222 223333333222 247889999999976432111111 3344444
Q ss_pred cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
.+..++ ..|+.++.+++++++.|.+.+.
T Consensus 141 ~~~~~~------~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 141 NSLLFM------ETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp TTCEEE------ECCTTTCTTHHHHHHHHHHTSC
T ss_pred cCCeEE------EEeCCCCCCHHHHHHHHHHHHh
Confidence 454433 3455667899999999976553
No 42
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.80 E-value=1.7e-18 Score=130.79 Aligned_cols=165 Identities=18% Similarity=0.156 Sum_probs=100.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
...++|+|+|.+|+|||||+|+|++...........+.+... ..+... ....+.||||||.......
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~---------- 90 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFST--RTVMLGTAAVKAQIWDTAGLERYRAI---------- 90 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEE--EEEEETTEEEEEEEEEESCCCTTCTT----------
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEEEECCEEEEEEEEeCCCchhhhhh----------
Confidence 446899999999999999999999876533322222222222 223321 2347899999998754321
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc-cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK-KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
+..+...+|++|+|+|+.++.+.. ....++..+... ....|+++|+||+|+........+ ..+.+..
T Consensus 91 -~~~~~~~~d~vi~v~D~~~~~s~~--~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~ 158 (193)
T 2oil_A 91 -TSAYYRGAVGALLVFDLTKHQTYA--VVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTE---------EARMFAE 158 (193)
T ss_dssp -HHHHHTTCCEEEEEEETTCHHHHH--THHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHH---------HHHHHHH
T ss_pred -hHHHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHH---------HHHHHHH
Confidence 112345779999999997432211 122333333221 134789999999998654311111 1344445
Q ss_pred HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
..+..++. .|+.++.+++++++.|.+.+.++
T Consensus 159 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~~ 189 (193)
T 2oil_A 159 NNGLLFLE------TSALDSTNVELAFETVLKEIFAK 189 (193)
T ss_dssp HTTCEEEE------ECTTTCTTHHHHHHHHHHHHHHH
T ss_pred HcCCEEEE------EeCCCCCCHHHHHHHHHHHHHHH
Confidence 55544433 34556789999999998776553
No 43
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.80 E-value=5.1e-18 Score=127.27 Aligned_cols=163 Identities=13% Similarity=0.105 Sum_probs=105.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
.+.++|+++|.+|+|||||+|++++.. ... ...|.......+.+ ++..+.+|||||.. .+...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~----~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~-----------~~~~~ 78 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDT----ISPTLGFNIKTLEH-RGFKLNIWDVGGQK-----------SLRSY 78 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSS----CCCCSSEEEEEEEE-TTEEEEEEEECCSH-----------HHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCc----ccccCccceEEEEE-CCEEEEEEECCCCH-----------hHHHH
Confidence 567999999999999999999999877 211 12233344555666 78899999999964 23344
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
+..+...+|++++|+|+.++.+-. ....++.+.... ....|+++|+||+|+.... ..++..+. +. +.
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~-----~~--~~ 147 (186)
T 1ksh_A 79 WRNYFESTDGLIWVVDSADRQRMQ--DCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEA-----LE--LD 147 (186)
T ss_dssp GGGGCTTCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHH-----TT--GG
T ss_pred HHHHhcCCCEEEEEEECcCHHHHH--HHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHHHHHHH-----hC--hh
Confidence 456678899999999997543322 222333333322 1347999999999987653 33322221 00 01
Q ss_pred HcC-CcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 175 LCD-NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 175 ~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
... ..+.. ...|+.++.+++++++.|.+.+.++
T Consensus 148 ~~~~~~~~~----~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 148 SIRSHHWRI----QGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp GCCSSCEEE----EECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred hccCCceEE----EEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 111 12222 2446667799999999999888765
No 44
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.80 E-value=1.9e-18 Score=130.32 Aligned_cols=165 Identities=15% Similarity=0.088 Sum_probs=100.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI 93 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~ 93 (225)
....++|+|+|.+|+|||||+|+|++........ +..+.......+.+ ++ ..+.||||||........
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~------- 87 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRSIT------- 87 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEE-TTEEEEEEEECCTTGGGTSCCC-------
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CcccceeEEEEEEE-CCEEEEEEEEECCCchhhhhhH-------
Confidence 4567899999999999999999999776432221 22222333334444 44 478999999976543221
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 172 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~ 172 (225)
..+...+|++|+|+|+.++.+... ..++..+..... ...|+++|+||+|+........++ ..++
T Consensus 88 ----~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~~~---------~~~~ 152 (191)
T 2a5j_A 88 ----RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS--SNMVIMLIGNKSDLESRRDVKREE---------GEAF 152 (191)
T ss_dssp ----HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHH---------HHHH
T ss_pred ----HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCCccccCHHH---------HHHH
Confidence 123457899999999974322221 223334433222 247999999999986432111111 3444
Q ss_pred HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
....+..++. .|+.++.+++++++.|.+.+.++
T Consensus 153 ~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~~ 185 (191)
T 2a5j_A 153 AREHGLIFME------TSAKTACNVEEAFINTAKEIYRK 185 (191)
T ss_dssp HHHHTCEEEE------ECTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHcCCEEEE------EeCCCCCCHHHHHHHHHHHHHHH
Confidence 4555554433 34556689999999988766543
No 45
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.80 E-value=6.3e-18 Score=126.76 Aligned_cols=162 Identities=19% Similarity=0.186 Sum_probs=99.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
..++|+++|.+|+|||||+|+|++...... ..+++.........+ ++. .+.+|||||..+......
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~-------- 70 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDE---YDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRD-------- 70 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCC---CCTTCCEEEEEEEEE-TTEEEEEEEEECCCC---CTTHH--------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCC---CCCCchheEEEEEEE-CCcEEEEEEEECCCcHHHHHHHH--------
Confidence 468999999999999999999997764222 223333333344444 454 477899999765432111
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
.+...+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+.... ...+. ..++..
T Consensus 71 ---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~--~~~~~--------~~~~~~ 136 (189)
T 4dsu_A 71 ---QYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSRT--VDTKQ--------AQDLAR 136 (189)
T ss_dssp ---HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSSCS--SCHHH--------HHHHHH
T ss_pred ---HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCcccc--cCHHH--------HHHHHH
Confidence 12234699999999974322222 223333433221 2347999999999986432 11111 344555
Q ss_pred HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
..+.+++. .|+.++.+++++++.|.+.+.+.
T Consensus 137 ~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~~ 167 (189)
T 4dsu_A 137 SYGIPFIE------TSAKTRQGVDDAFYTLVREIRKH 167 (189)
T ss_dssp HHTCCEEE------CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HcCCeEEE------EeCCCCCCHHHHHHHHHHHHHHh
Confidence 55554433 35566789999999998877654
No 46
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.79 E-value=1.5e-18 Score=130.61 Aligned_cols=165 Identities=16% Similarity=0.101 Sum_probs=101.6
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
..+.++|+|+|.+|+|||||+|+|++...... ...|.......+.. .+..+.||||||..+ +..
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~ 82 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNED----MIPTVGFNMRKITK-GNVTIKLWDIGGQPR-----------FRS 82 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCS----CCCCCSEEEEEEEE-TTEEEEEEEECCSHH-----------HHT
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCc----cCCCCceeEEEEEe-CCEEEEEEECCCCHh-----------HHH
Confidence 35679999999999999999999997664311 12233334444555 788999999999642 222
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
.+..+...+|++|+|+|+.+..+.. ....++...... ....|+++|+||+|+.... ..++.... .. .
T Consensus 83 ~~~~~~~~~d~ii~v~D~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~-~~------~ 151 (188)
T 1zd9_A 83 MWERYCRGVSAIVYMVDAADQEKIE--ASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEK-MN------L 151 (188)
T ss_dssp THHHHHTTCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHH-TT------G
T ss_pred HHHHHHccCCEEEEEEECCCHHHHH--HHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHH-hC------h
Confidence 3334456789999999997442222 233344443322 1347999999999987543 22222222 00 0
Q ss_pred HHcC-CcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 174 QLCD-NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 174 ~~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
.... ..+.. ...|+.++.+++++++.|.+.+.++
T Consensus 152 ~~~~~~~~~~----~~~SA~~g~gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 152 SAIQDREICC----YSISCKEKDNIDITLQWLIQHSKSR 186 (188)
T ss_dssp GGCCSSCEEE----EECCTTTCTTHHHHHHHHHHTCC--
T ss_pred hhhccCCeeE----EEEECCCCCCHHHHHHHHHHHHHhh
Confidence 0011 11222 2456677899999999998766543
No 47
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.79 E-value=1.8e-18 Score=127.55 Aligned_cols=162 Identities=15% Similarity=0.240 Sum_probs=98.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
..++|+++|++|+|||||+|+|.+...... ..++.|.......+.+ ++..+.+|||||+........ .+.+....
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~--~~~~~~~~ 76 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIG--NWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSI--DEIIARDY 76 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEEE-TTEEEEEEECCCCSCSSSSSH--HHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeecc--CCCCcceeeeEEEEEE-CCcEEEEEECCCcccCCCcch--hHHHHHHH
Confidence 357899999999999999999998764221 2334455544455566 678999999999886542221 11222111
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
.. ...+|++++|+|+.+ . . ....++.+.... ..|+++|.||+|+.... .. .....++.+..+
T Consensus 77 ~~-~~~~~~~i~v~D~~~-~-~---~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~--~~--------~~~~~~~~~~~~ 138 (165)
T 2wji_A 77 II-NEKPDLVVNIVDATA-L-E---RNLYLTLQLMEM--GANLLLALNKMDLAKSL--GI--------EIDVDKLEKILG 138 (165)
T ss_dssp HH-HHCCSEEEEEEETTC-H-H---HHHHHHHHHHHT--TCCEEEEEECHHHHHHT--TC--------CCCHHHHHHHHT
T ss_pred Hh-cCCCCEEEEEecCCc-h-h---HhHHHHHHHHhc--CCCEEEEEEchHhcccc--Ch--------hhHHHHHHHHhC
Confidence 11 125799999999873 2 1 122233332222 47999999999964321 10 111344444445
Q ss_pred CcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158 178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~ 208 (225)
.++ ...||+++.+++++++.+.+.+
T Consensus 139 ~~~------~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 139 VKV------VPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp SCE------EECBGGGTBSHHHHHHHHHHHT
T ss_pred CCE------EEEEcCCCCCHHHHHHHHHHHh
Confidence 433 2456778899999999997654
No 48
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.79 E-value=2.6e-18 Score=130.71 Aligned_cols=163 Identities=12% Similarity=0.069 Sum_probs=100.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
..++|+|+|.+|+|||||+|+|++........ +..+.......+... ....+.||||||.... ...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----------~~~ 73 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFV--STVGIDFKVKTIYRNDKRIKLQIWDTAGLERY-----------RTI 73 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCC--CCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-----------HHH
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcC--CccceeEEEEEEEECCeEEEEEEEECCCchhh-----------cch
Confidence 45899999999999999999999877432222 222222323333331 1348999999997532 223
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
+..+...+|++|+|+|+.++.+... ..++..+..... ...|+++|+||+|+........+ ...++.+.
T Consensus 74 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~~ 142 (203)
T 1zbd_A 74 TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVLLVGNKCDMEDERVVSSE---------RGRQLADH 142 (203)
T ss_dssp HHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--SSCEEEEEEECTTCTTSCCSCHH---------HHHHHHHH
T ss_pred HHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCcccccCHH---------HHHHHHHH
Confidence 3456668899999999974322111 223333333221 24799999999998654311111 13445555
Q ss_pred cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
.+.+++ ..|+.++.+++++++.|.+.+.+
T Consensus 143 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 143 LGFEFF------EASAKDNINVKQTFERLVDVICE 171 (203)
T ss_dssp HTCEEE------ECBTTTTBSSHHHHHHHHHHHHH
T ss_pred CCCeEE------EEECCCCCCHHHHHHHHHHHHHH
Confidence 555433 33555668888888888776654
No 49
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.79 E-value=1.9e-18 Score=137.69 Aligned_cols=168 Identities=18% Similarity=0.197 Sum_probs=111.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
+.++|+++|++|+|||||+|+|++... .. ...++.|.......+.+ .+..+.+|||||+.+....... +.+...
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-~~-~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~- 75 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-HV-GNWPGVTVEKKEGIMEY-REKEFLVVDLPGIYSLTAHSID--ELIARN- 75 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-EE-EECTTSSCEEEEEEEEE-TTEEEEEEECCCCSCCCSSCHH--HHHHHH-
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-cc-CCCCCeEEEeeEEEEEE-CCceEEEEeCCCccccccCCHH--HHHHHH-
Confidence 458999999999999999999999875 22 23566777777777777 7888999999999876543221 111111
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
......+|++++|+|+.. . . +.+.+..+.... ...|+++|+||+|..... ........+.+..+
T Consensus 76 ~~~~~~~d~vi~v~D~~~-~-~---~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~----------~~~~~~~~l~~~lg 139 (271)
T 3k53_A 76 FILDGNADVIVDIVDSTC-L-M---RNLFLTLELFEM-EVKNIILVLNKFDLLKKK----------GAKIDIKKMRKELG 139 (271)
T ss_dssp HHHTTCCSEEEEEEEGGG-H-H---HHHHHHHHHHHT-TCCSEEEEEECHHHHHHH----------TCCCCHHHHHHHHS
T ss_pred hhhccCCcEEEEEecCCc-c-h---hhHHHHHHHHhc-CCCCEEEEEEChhcCccc----------ccHHHHHHHHHHcC
Confidence 122357899999999973 2 1 222222232211 117999999999964321 01112445555556
Q ss_pred CcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158 178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG 213 (225)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~ 213 (225)
.+++ +.|+..+.+++++++.+.+.......
T Consensus 140 ~~~~------~~Sa~~g~gi~~l~~~i~~~~~~~~~ 169 (271)
T 3k53_A 140 VPVI------PTNAKKGEGVEELKRMIALMAEGKVT 169 (271)
T ss_dssp SCEE------ECBGGGTBTHHHHHHHHHHHHHTCCC
T ss_pred CcEE------EEEeCCCCCHHHHHHHHHHHHhcccc
Confidence 5443 45666778999999999998876543
No 50
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.79 E-value=3.3e-18 Score=135.31 Aligned_cols=165 Identities=19% Similarity=0.199 Sum_probs=109.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
.+.++|+|+|.+|+|||||+|+|++.... . ...++.|.......+.. .+..+.||||||+........ .+.+...
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~-~-~~~pg~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~--~e~v~~~ 77 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQY-V-ANWPGVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYSSI--DEKIARD 77 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEE-E-EECTTSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSSSH--HHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCc-c-cCCCCceEEEEEEEEEE-CCeEEEEEECCCcCccCCCCH--HHHHHHH
Confidence 34689999999999999999999997753 2 23457777777767776 678999999999987653321 1122211
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
.. ....+|++++|+|+.. +. .. +.++.++.. ...|+++|+||+|..... . ......++.+..
T Consensus 78 ~~-~~~~~d~ii~V~D~t~-~~-~~---~~~~~~l~~--~~~pvilv~NK~Dl~~~~--~--------i~~~~~~l~~~l 139 (258)
T 3a1s_A 78 YL-LKGDADLVILVADSVN-PE-QS---LYLLLEILE--MEKKVILAMTAIDEAKKT--G--------MKIDRYELQKHL 139 (258)
T ss_dssp HH-HHSCCSEEEEEEETTS-CH-HH---HHHHHHHHT--TTCCEEEEEECHHHHHHT--T--------CCBCHHHHHHHH
T ss_pred HH-hhcCCCEEEEEeCCCc-hh-hH---HHHHHHHHh--cCCCEEEEEECcCCCCcc--c--------hHHHHHHHHHHc
Confidence 11 1147899999999973 32 12 223333322 248999999999965332 1 111245555555
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
+.+++ +.|+.++.++++|++.+.+..+.
T Consensus 140 g~~vi------~~SA~~g~gi~el~~~i~~~~~~ 167 (258)
T 3a1s_A 140 GIPVV------FTSSVTGEGLEELKEKIVEYAQK 167 (258)
T ss_dssp CSCEE------ECCTTTCTTHHHHHHHHHHHHHS
T ss_pred CCCEE------EEEeeCCcCHHHHHHHHHHHhhc
Confidence 65443 34556679999999999988763
No 51
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.79 E-value=6.5e-18 Score=128.84 Aligned_cols=164 Identities=16% Similarity=0.135 Sum_probs=104.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
...++|+|+|.+|+|||||+|+|++...... ..+..+.......+.+ ++ ..+.||||||.......
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~--------- 73 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTND--YISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRTI--------- 73 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTT--CCCSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTCC---------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCcccceeEEEEEEE-CCEEEEEEEEeCCChHHHHHH---------
Confidence 4468999999999999999999998764322 2233333344444555 44 37999999997654322
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
+..+...+|++|+|+|+.++.+... ..++..+..... ...|+++|+||+|+........++ ..++.
T Consensus 74 --~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~ 140 (206)
T 2bcg_Y 74 --TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT--STVLKLLVGNKCDLKDKRVVEYDV---------AKEFA 140 (206)
T ss_dssp --CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTCCSCHHH---------HHHHH
T ss_pred --HHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccccccCHHH---------HHHHH
Confidence 2245668899999999974432222 223334433322 247899999999987543111111 33444
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
...+.+++ ..|+..+.+++++++.|.+.+.+.
T Consensus 141 ~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 141 DANKMPFL------ETSALDSTNVEDAFLTMARQIKES 172 (206)
T ss_dssp HHTTCCEE------ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHcCCeEE------EEeCCCCCCHHHHHHHHHHHHHHH
Confidence 45554433 335566789999999998887664
No 52
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.79 E-value=2.6e-19 Score=136.06 Aligned_cols=170 Identities=14% Similarity=0.090 Sum_probs=94.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI 93 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~ 93 (225)
....++|+|+|.+|+|||||+|+|++...........+ .......+.+ ++ ..+.||||||..... ..+
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-------~~~ 94 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLG--VDFQMKTLIV-DGERTVLQLWDTAGQERFR-------SIA 94 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC------------CEEEEEEE-TTEEEEEEEEECTTCTTCH-------HHH
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCcc--ceeEEEEEEE-CCEEEEEEEEECCCCcchh-------hhH
Confidence 35679999999999999999999997764222111112 2222233344 33 469999999976431 111
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 172 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~ 172 (225)
. .+...+|++|+|+|+.++.+... ..++..+..... ...|+++|+||+|+.... . .+...........++
T Consensus 95 ~----~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~~--~-~~~~~~v~~~~~~~~ 165 (199)
T 2p5s_A 95 K----SYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAH--ETVPIMLVGNKADIRDTA--A-TEGQKCVPGHFGEKL 165 (199)
T ss_dssp H----HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGHHHH--H-HTTCCCCCHHHHHHH
T ss_pred H----HHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccccccc--c-cccccccCHHHHHHH
Confidence 1 22335699999999974432222 223444444322 247999999999975211 0 000000001113344
Q ss_pred HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
....+..++ ..|+..+.++++++..|.+.+.+
T Consensus 166 ~~~~~~~~~------~~SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 166 AMTYGALFC------ETSAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp HHHHTCEEE------ECCTTTCTTHHHHHHHHHHHHTC
T ss_pred HHHcCCeEE------EeeCCCCCCHHHHHHHHHHHHHh
Confidence 445554433 34556678999999999877653
No 53
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.79 E-value=1.5e-18 Score=127.90 Aligned_cols=162 Identities=12% Similarity=0.151 Sum_probs=100.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
..++|+++|.+|+|||||+|+|++...... ..+..+.......+.+ ++ ..+.+|||||........
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~--------- 69 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPS--FITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTIT--------- 69 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCCC---------
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCC--CCCccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhhhH---------
Confidence 358999999999999999999997764222 2223333344444555 33 378999999976443221
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
..+...+|++++|+|+.++.+... ..++..+..... ...|+++|+||+|+.... ...++ ..++.+
T Consensus 70 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~-~~~~~---------~~~~~~ 135 (170)
T 1g16_A 70 --TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMETRV-VTADQ---------GEALAK 135 (170)
T ss_dssp --HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTCC-SCHHH---------HHHHHH
T ss_pred --HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCCcCc-cCHHH---------HHHHHH
Confidence 123457799999999974322211 234444444322 247999999999984321 11111 334445
Q ss_pred HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
..+..++ ..|+.++.+++++++.|.+.+.++
T Consensus 136 ~~~~~~~------~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 136 ELGIPFI------ESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp HHTCCEE------ECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred HcCCeEE------EEECCCCCCHHHHHHHHHHHHHHH
Confidence 5554433 345566789999999999888765
No 54
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=130.98 Aligned_cols=164 Identities=13% Similarity=0.077 Sum_probs=101.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
..+.++|+|+|.+|+|||||+|+|++...+... ...|.......+.+ ++..+.||||||..... .
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~-----------~ 82 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN---ILPTIGFSIEKFKS-SSLSFTVFDMSGQGRYR-----------N 82 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSS---CCCCSSEEEEEEEC-SSCEEEEEEECCSTTTG-----------G
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCC---cCCccceeEEEEEE-CCEEEEEEECCCCHHHH-----------H
Confidence 466799999999999999999999987733222 22344455566666 67899999999976442 2
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc----ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK----ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 171 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (225)
.+..+...+|++|+|+|+.++.+. .....++....... ...|+++|+||+|+.... ..++. .+
T Consensus 83 ~~~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~---------~~ 149 (190)
T 2h57_A 83 LWEHYYKEGQAIIFVIDSSDRLRM--VVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAV--TSVKV---------SQ 149 (190)
T ss_dssp GGGGGGGGCSEEEEEEETTCHHHH--HHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCC--CHHHH---------HH
T ss_pred HHHHHHhcCCEEEEEEECCCHHHH--HHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCC--CHHHH---------HH
Confidence 223455678999999999743211 12223333332221 247999999999986542 22222 22
Q ss_pred HHH--HcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 172 ILQ--LCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 172 ~~~--~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
.+. .... .+.. ...|+.++.+++++++.|.+.+++.
T Consensus 150 ~~~~~~~~~~~~~~----~~~Sa~~~~gi~~l~~~l~~~i~~~ 188 (190)
T 2h57_A 150 LLCLENIKDKPWHI----CASDAIKGEGLQEGVDWLQDQIQTV 188 (190)
T ss_dssp HHTGGGCCSSCEEE----EECBTTTTBTHHHHHHHHHHHC---
T ss_pred HhChhhccCCceEE----EEccCCCCcCHHHHHHHHHHHHHHh
Confidence 221 1111 1222 2346677799999999998876543
No 55
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.79 E-value=7.4e-18 Score=126.22 Aligned_cols=164 Identities=15% Similarity=0.126 Sum_probs=104.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
...++|+|+|.+|+|||||+|+|++...... ..+..+.......+.+ ++ ..+.+|||||.... .
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~ 73 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDD--SNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERF-----------R 73 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTT--CCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------H
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHHH-----------H
Confidence 4568999999999999999999997764322 2233333444444555 44 48999999996532 2
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
..+..+...+|++|+|+|+.++.+... ..++..+..... ...|+++|+||+|+.........+ ..++.
T Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~ 142 (186)
T 2bme_A 74 SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS--QNIVIILCGNKKDLDADREVTFLE---------ASRFA 142 (186)
T ss_dssp HHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHH---------HHHHH
T ss_pred HHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHHH---------HHHHH
Confidence 334566778999999999974322221 223333444322 247999999999986432111111 33444
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
...+..++ ..|+.++.+++++++.+.+.+.+.
T Consensus 143 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (186)
T 2bme_A 143 QENELMFL------ETSALTGENVEEAFVQCARKILNK 174 (186)
T ss_dssp HHTTCEEE------ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHcCCEEE------EecCCCCCCHHHHHHHHHHHHHHH
Confidence 44454333 235566789999999988776553
No 56
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.79 E-value=2.2e-18 Score=131.92 Aligned_cols=165 Identities=13% Similarity=0.152 Sum_probs=101.9
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHH
Q 036158 15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKE 92 (225)
Q Consensus 15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~ 92 (225)
+....++|+|+|.+|+|||||+|+|++...... ..+..+.......+.+ ++ ..+.||||||.......
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~------- 85 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPS--FITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTI------- 85 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCS--SSCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTCC-------
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcc--cCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHH-------
Confidence 345679999999999999999999997664222 2233344444455555 45 47999999997644221
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158 93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 171 (225)
Q Consensus 93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (225)
+..+...+|++|+|+|+.++.+... ..++..+...... ..|+++|+||+|+.... ...++ ..+
T Consensus 86 ----~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~-~~~~~---------~~~ 149 (213)
T 3cph_A 86 ----TTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDMETRV-VTADQ---------GEA 149 (213)
T ss_dssp ----CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTT--CSEEEEEEECTTCSSCC-SCHHH---------HHH
T ss_pred ----HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCcccc-cCHHH---------HHH
Confidence 1223457899999999974322211 2344444443322 37999999999984321 11111 334
Q ss_pred HHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 172 ILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
+....+.+++ ..|+.++.+++++++.|.+.+.+.
T Consensus 150 ~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~~ 183 (213)
T 3cph_A 150 LAKELGIPFI------ESSAKNDDNVNEIFFTLAKLIQEK 183 (213)
T ss_dssp HHHHHTCCEE------ECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred HHHHcCCEEE------EEeCCCCCCHHHHHHHHHHHHHHH
Confidence 4444554433 345566788999999988777653
No 57
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.79 E-value=3.4e-19 Score=131.33 Aligned_cols=163 Identities=17% Similarity=0.119 Sum_probs=97.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
+.++|+++|.+|+|||||+|+|++....... .+..+.......+.+ ++ ..+.+|||||..... .
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~-----------~ 67 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENK--EPTIGAAFLTQRVTI-NEHTVKFEIWDTAGQERFA-----------S 67 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTC--CCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGG-----------G
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEEEEE-CCEEEEEEEEECCCChhhh-----------h
Confidence 3589999999999999999999977643222 222223333333444 33 379999999965321 1
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
.+..+...+|++++|+|+.++.+..+ ..++..+..... ...|+++|+||+|+..... ..+.. .....++..
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~--~~~v~----~~~~~~~~~ 139 (170)
T 1ek0_A 68 LAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS--KDIIIALVGNKIDXLQEGG--ERKVA----REEGEKLAE 139 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGSSC--CCCSC----HHHHHHHHH
T ss_pred hhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCcccccc--ccCCC----HHHHHHHHH
Confidence 12234457799999999974422222 223333333322 2478999999999875421 00000 011234444
Q ss_pred HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158 175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~ 208 (225)
..+..++ ..|+.++.+++++++.|.+.+
T Consensus 140 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 140 EKGLLFF------ETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp HHTCEEE------ECCTTTCTTHHHHHHHHHTTS
T ss_pred HcCCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 4454433 334556789999999987644
No 58
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.79 E-value=9.2e-18 Score=127.72 Aligned_cols=165 Identities=18% Similarity=0.156 Sum_probs=101.2
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHH
Q 036158 15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKE 92 (225)
Q Consensus 15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~ 92 (225)
+..+.++|+|+|.+|+|||||+|+|++...... ..+++.......+.+ ++. .+.||||||..+.. ..
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----~~--- 78 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVED---YEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDYA----AI--- 78 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTT---CCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH----HH---
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCC---CCCccceEEEEEEEE-CCEEEEEEEEcCCChhhhH----HH---
Confidence 345679999999999999999999997764221 222222333334444 443 79999999976541 11
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158 93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 171 (225)
Q Consensus 93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (225)
. ..+...+|++++|+|+++..+... ..++..+..... ....|+++|+||+|+........++ ..+
T Consensus 79 ~----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~---------~~~ 144 (206)
T 2bov_A 79 R----DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEE---------AKN 144 (206)
T ss_dssp H----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGGGCCSCHHH---------HHH
T ss_pred H----HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCccccccccHHH---------HHH
Confidence 1 122335699999999974322111 223334443322 1247999999999986543112221 344
Q ss_pred HHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 172 ILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
+.+..+..++. .|+.++.+++++++.|.+.+.+
T Consensus 145 ~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 145 RAEQWNVNYVE------TSAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp HHHHHTCEEEE------ECTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHhCCeEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 55555554433 3445668999999999877755
No 59
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.79 E-value=7.7e-19 Score=132.74 Aligned_cols=164 Identities=13% Similarity=0.172 Sum_probs=98.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI 93 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~ 93 (225)
....++|+|+|.+|+|||||+|+|++...... ..+..+.......+.+ ++ ..+.||||||.... ....
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~-------~~~~ 92 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEA--CKSTVGVDFKIKTVEL-RGKKIRLQIWDTAGQERF-------NSIT 92 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSGGG-------HHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcC--CCCccceeEEEEEEEE-CCeEEEEEEEeCCCcHHH-------HHHH
Confidence 35578999999999999999999998764322 1233334444445555 44 37899999996532 1112
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 172 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~ 172 (225)
..+...+|++|+|+|+.++.+..+ ..++..+..... ...|+++|+||+|+........++ .+++
T Consensus 93 ----~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilV~NK~Dl~~~~~v~~~~---------~~~~ 157 (192)
T 2il1_A 93 ----SAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCETDREITRQQ---------GEKF 157 (192)
T ss_dssp ----HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHH---------HHHH
T ss_pred ----HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHHH---------HHHH
Confidence 223345699999999975433222 223344444322 247999999999976443111111 2333
Q ss_pred HHHc-CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 173 LQLC-DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 173 ~~~~-~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
.+.. +..++ ..|+.++.+++++++.|.+.+.+
T Consensus 158 ~~~~~~~~~~------~~SA~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 158 AQQITGMRFC------EASAKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp HHTSTTCEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHhcCCCeEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 3332 22222 34566779999999999877654
No 60
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=1.1e-18 Score=131.66 Aligned_cols=166 Identities=13% Similarity=0.073 Sum_probs=101.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
..+.++|+|+|.+|+|||||+|+|++....... .+..+.......+.+. ....+.||||||.......
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------- 80 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPEL--AATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL--------- 80 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTC--CCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCS---------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCCccC--CCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhh---------
Confidence 345689999999999999999999977643221 2222233333334441 1247999999997644221
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 172 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~ 172 (225)
+..+...+|++|+|+|+.++.+.. ....++.++... ....|+++|+||+|+.... ...++ ..++
T Consensus 81 --~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~---------~~~~ 146 (195)
T 1x3s_A 81 --TPSYYRGAQGVILVYDVTRRDTFV--KLDNWLNELETYCTRNDIVNMLVGNKIDKENRE-VDRNE---------GLKF 146 (195)
T ss_dssp --HHHHHTTCCEEEEEEETTCHHHHH--THHHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-SCHHH---------HHHH
T ss_pred --hHHHhccCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCcCCCcEEEEEECCcCcccc-cCHHH---------HHHH
Confidence 112345779999999997432221 222333433221 1247899999999984332 11111 3344
Q ss_pred HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
....+..++ ..|+.++.+++++++.|.+.+.+..
T Consensus 147 ~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 147 ARKHSMLFI------EASAKTCDGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp HHHTTCEEE------ECCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred HHHcCCEEE------EecCCCCCCHHHHHHHHHHHHHhhh
Confidence 445554433 3355667899999999998887653
No 61
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.79 E-value=1.1e-17 Score=125.88 Aligned_cols=166 Identities=12% Similarity=0.068 Sum_probs=102.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEE-EEEEEeeC----------CceEEEEeCCCCCCCCCC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCE-MQRTMLKD----------GQVVNVIDTPGLFDSSAD 85 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~----------~~~~~liDtPG~~~~~~~ 85 (225)
...++|+|+|.+|+|||||+|+|++....... .+..+.... ...+...+ ...+.||||||....
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--- 83 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKF--ITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF--- 83 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSC--CCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG---
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCc--ccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH---
Confidence 45689999999999999999999976642221 112222222 22334312 248999999997432
Q ss_pred cHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhc
Q 036158 86 SEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE 164 (225)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~ 164 (225)
...+..+...+|++|+|+|+.++.+... ..++..+..... ....|+++|+||+|+........+
T Consensus 84 --------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~------ 148 (195)
T 3bc1_A 84 --------RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLEDQRAVKEE------ 148 (195)
T ss_dssp --------HHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGGGCCSCHH------
T ss_pred --------HHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccCHH------
Confidence 2334456778899999999974432222 233333433221 124799999999998653211111
Q ss_pred CCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 165 CPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
..+++....+.+++ ..|+..+.+++++++.|.+.+.+.
T Consensus 149 ---~~~~~~~~~~~~~~------~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 149 ---EARELAEKYGIPYF------ETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp ---HHHHHHHHHTCCEE------ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHcCCCEE------EEECCCCCCHHHHHHHHHHHHHHH
Confidence 13445555554443 345566789999999998877553
No 62
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.79 E-value=5.7e-18 Score=125.45 Aligned_cols=166 Identities=19% Similarity=0.147 Sum_probs=95.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
...++|+++|.+|+|||||+|+|.+...... ....+.+... ..+.+ ++. .+.+|||||..... ..
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~--~~~~~-~~~~~~~~~~D~~g~~~~~---------~~ 68 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYE--RTLTV-DGEDTTLVVVDTWEAEKLD---------KS 68 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEE--EEEEE-TTEEEEEEEECCC----------------C
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeE--EEEEE-CCEEEEEEEEecCCCCccc---------hh
Confidence 3568999999999999999999998775333 2233333322 33444 443 78999999976421 01
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
.....+...+|++++|+|++++.+... ..++..+.... .....|+++|+||+|+........++ .+.+.
T Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~piilv~NK~Dl~~~~~v~~~~---------~~~~~ 138 (175)
T 2nzj_A 69 WSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTH-QADHVPIILVGNKADLARCREVSVEE---------GRACA 138 (175)
T ss_dssp HHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCHHH---------HHHHH
T ss_pred hhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-ccCCCCEEEEEEChhhccccccCHHH---------HHHHH
Confidence 112235667899999999974322222 12333333321 11247999999999987543112111 22333
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
...+..++ ..|+.++.+++++++.|.+.+.+.
T Consensus 139 ~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 139 VVFDCKFI------ETSATLQHNVAELFEGVVRQLRLR 170 (175)
T ss_dssp HHHTSEEE------ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHcCCeEE------EEecCCCCCHHHHHHHHHHHHHHh
Confidence 33443332 345667789999999998877654
No 63
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.79 E-value=9.6e-18 Score=126.18 Aligned_cols=166 Identities=17% Similarity=0.159 Sum_probs=99.3
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHH
Q 036158 15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKE 92 (225)
Q Consensus 15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~ 92 (225)
+..+.++|+++|.+|+|||||+|+|++...... ...++.......+.+ ++. .+.||||||..+.
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~---------- 82 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDE---YDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEY---------- 82 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSC---CCTTCCEEEEEEEEE-TTEEEEEEEEECCC--------------
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccc---cCCccceEEEEEEEE-CCEEEEEEEEECCChHHH----------
Confidence 345678999999999999999999997654222 222233333334444 443 5899999996533
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158 93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 171 (225)
Q Consensus 93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (225)
......+...+|++++|+++.+..+..+ ..++..+..... ....|+++|+||+|+.... ...+ ..++
T Consensus 83 -~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~-~~~~---------~~~~ 150 (190)
T 3con_A 83 -SAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPTRT-VDTK---------QAHE 150 (190)
T ss_dssp --------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCC-SCHH---------HHHH
T ss_pred -HHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCccc-CCHH---------HHHH
Confidence 2223345678899999999974432222 223334444322 1247999999999976532 1111 1344
Q ss_pred HHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 172 ILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
+.+..+.+++ ..|+.++.+++++++.|.+.+.+..
T Consensus 151 ~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~~~ 185 (190)
T 3con_A 151 LAKSYGIPFI------ETSAKTRQGVEDAFYTLVREIRQYR 185 (190)
T ss_dssp HHHHHTCCEE------ECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCeEE------EEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 5555554433 3355667899999999988877654
No 64
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.79 E-value=1e-17 Score=127.24 Aligned_cols=186 Identities=16% Similarity=0.064 Sum_probs=99.5
Q ss_pred CCCcccCCCCCCCCCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCC
Q 036158 1 MGGRVIDADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPG 78 (225)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG 78 (225)
||.+...............++|+++|.+|+|||||+|++++.... .. ..+++.......+.+ ++. .+.+|||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~-~~--~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G 77 (201)
T 2q3h_A 2 MGPGEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYP-TE--YIPTAFDNFSAVVSV-DGRPVRLQLCDTAG 77 (201)
T ss_dssp ------------------CEEEEEECSTTSSHHHHHHHHHC-----------CCSSEEEEEEEEE-TTEEEEEEEEECCC
T ss_pred CCCCCCCcccccCCCCCcceEEEEECCCCCCHHHHHHHHHhCCCC-CC--CCCcccceeEEEEEE-CCEEEEEEEEECCC
Confidence 344444444444455677899999999999999999999987632 21 222222332333444 454 677999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCccc
Q 036158 79 LFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDET 156 (225)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~ 156 (225)
....... +..+...+|++|+|+|++++.+..+. .++..+..... ..|+++|.||+|+.... ..
T Consensus 78 ~~~~~~~-----------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~-~~ 142 (201)
T 2q3h_A 78 QDEFDKL-----------RPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLREDV-KV 142 (201)
T ss_dssp STTCSSS-----------GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGGGCH-HH
T ss_pred CHHHHHH-----------hHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhhch-hh
Confidence 8765321 22456688999999999744332222 24444444322 47999999999986532 11
Q ss_pred HHHHhh---h-cCCchHHHHHHHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 157 LEDYLG---R-ECPKPLKEILQLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 157 ~~~~~~---~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
...+.. . ........+....+. .+ ...|+.++.+++++++.|.+.+.+.
T Consensus 143 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------~~~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 143 LIELDKCKEKPVPEEAAKLLAEEIKAASY------IECSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp HHHHHTTTCCCCCHHHHHHHHHHHTCSEE------EECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred hhhhcccccccCCHHHHHHHHHhcCCcEE------EEEecCCCCCHHHHHHHHHHHHhcc
Confidence 111110 0 001113344444443 32 2345667799999999998777654
No 65
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.79 E-value=6.1e-19 Score=150.42 Aligned_cols=164 Identities=14% Similarity=0.173 Sum_probs=91.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
.++|+++|.+|+|||||+|+|++.....+ ...+++|.+.....+.+ ++..+.||||||+.++... ..........
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v-s~~~gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~~~---ve~~gi~~~~ 307 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIV-SHMPGTTRDYIEECFIH-DKTMFRLTDTAGLREAGEE---IEHEGIRRSR 307 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC-------------------CEEEEE-TTEEEEEEC-----------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccc-CCCCCceEEEEEEEEEE-CCeEEEEEECCCCCcchhH---HHHHHHHHHH
Confidence 57899999999999999999998864333 23556777777677777 8889999999999754211 1111112234
Q ss_pred hcCCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158 99 MTKDGIHAVLVVFSVRNRFSEEEGA-AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
.+...+|++++|+|+.++.+..+.. ...++.. +. ..|+++|+||+|+.... .... ++ +.+. ..
T Consensus 308 ~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l~---~~piIvV~NK~Dl~~~~--~~~~--~~-----l~~~---~~ 371 (476)
T 3gee_A 308 MKMAEADLILYLLDLGTERLDDELTEIRELKAA-HP---AAKFLTVANKLDRAANA--DALI--RA-----IADG---TG 371 (476)
T ss_dssp CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHH-CT---TSEEEEEEECTTSCTTT--HHHH--HH-----HHHH---HT
T ss_pred hhcccCCEEEEEEECCCCcchhhhHHHHHHHHh-cC---CCCEEEEEECcCCCCcc--chhH--HH-----HHhc---CC
Confidence 5677899999999998666653221 2223333 22 37999999999987654 2211 11 1111 01
Q ss_pred CcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
. .....|++++.++++|++.|.+.+.
T Consensus 372 ~------~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 372 T------EVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp S------CEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred C------ceEEEEECCCCCHHHHHHHHHHHHh
Confidence 1 2234577788999999999999887
No 66
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.79 E-value=1.6e-17 Score=124.15 Aligned_cols=167 Identities=25% Similarity=0.205 Sum_probs=100.5
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHH
Q 036158 13 TSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVS 90 (225)
Q Consensus 13 ~~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~ 90 (225)
.....+.++|+|+|.+|+|||||+|+|++...... ...++.......... ++. .+.+|||||.........
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~--- 84 (183)
T 3kkq_A 12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDD---YDPTIEDSYLKHTEI-DNQWAILDVLDTAGQEEFSAMRE--- 84 (183)
T ss_dssp --CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSC---CCTTCCEEEEEEEEE-TTEEEEEEEEECCSCGGGCSSHH---
T ss_pred CccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCC---CCCCccceeEEEEEe-CCcEEEEEEEECCCchhhHHHHH---
Confidence 34456789999999999999999999997653222 122222222333444 454 466799999764432111
Q ss_pred HHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchH
Q 036158 91 KEIVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPL 169 (225)
Q Consensus 91 ~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~ 169 (225)
.+...+|++++|+|+.++.+... ..++..+..... ....|+++|+||+|+........++ .
T Consensus 85 --------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~---------~ 146 (183)
T 3kkq_A 85 --------QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMHLRKVTRDQ---------G 146 (183)
T ss_dssp --------HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-SSCCCEEEEEECTTCSTTCCSCHHH---------H
T ss_pred --------HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCCchhccCcCHHH---------H
Confidence 12234699999999974322211 223333333221 2347999999999986543112211 3
Q ss_pred HHHHHHcCCcEEEeeCCCccccc-cHHHHHHHHHHHHHHHHH
Q 036158 170 KEILQLCDNRCVLFDNKTKDTAK-RTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~i~~~~~~ 210 (225)
.++.+..+..++.. |+. ++.+++++++.|.+.+.+
T Consensus 147 ~~~~~~~~~~~~~~------Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 147 KEMATKYNIPYIET------SAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHTCCEEEE------BCSSSCBSHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCeEEEe------ccCCCCCCHHHHHHHHHHHHhh
Confidence 44555556554443 344 568999999999887764
No 67
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.78 E-value=8.4e-19 Score=148.77 Aligned_cols=186 Identities=17% Similarity=0.215 Sum_probs=111.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH-H
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIV-K 95 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~-~ 95 (225)
...++|+++|++|+|||||+|+|++.....+ ...+++|.+.....+.+ ++..+.+|||||+........+..+.+. .
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v-~~~~gtT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALV-SPIPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEE-CCCC------CCEEEEE-TTEEEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCccccc-CCCCCCcCCceEEEEEE-CCEEEEEEECCCCccccccchhhHHHHHHH
Confidence 3468999999999999999999999875333 33556676666666777 7889999999998533211100000000 0
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
....+...+|++++|+|+..+.+..+..+...+.. ...|+++|+||||+.+......+++... +.+.+..
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~-----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~ 325 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQRMAGLMER-----RGRASVVVFNKWDLVVHREKRYDEFTKL-----FREKLYF 325 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-----TTCEEEEEEECGGGSTTGGGCHHHHHHH-----HHHHCGG
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCCCchhhHHHHHHHH-----HHHHhcc
Confidence 00112234699999999986777666555554443 2379999999999876532223333222 2222222
Q ss_pred cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCCCHH
Q 036158 176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDE 219 (225)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~~~~ 219 (225)
.... .....||.++.++++|++.+.+...+.....-+..
T Consensus 326 ~~~~-----~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~i~t~~ 364 (439)
T 1mky_A 326 IDYS-----PLIFTSADKGWNIDRMIDAMNLAYASYTTKVPSSA 364 (439)
T ss_dssp GTTS-----CEEECBTTTTBSHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCCC-----cEEEEECCCCCCHHHHHHHHHHHHHhhcccCCHHH
Confidence 2211 12345777889999999999999888766554433
No 68
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.78 E-value=1.4e-18 Score=129.81 Aligned_cols=161 Identities=16% Similarity=0.127 Sum_probs=100.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
...++|+++|.+|+|||||+|++++...... .. |.......+.+ ++..+.+|||||...... .
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~----t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~-----------~ 78 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTT-KP----TIGFNVETLSY-KNLKLNVWDLGGQTSIRP-----------Y 78 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEE-CS----STTCCEEEEEE-TTEEEEEEEEC----CCT-----------T
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCcc-CC----cCccceEEEEE-CCEEEEEEECCCCHhHHH-----------H
Confidence 5679999999999999999999997765222 11 21122334555 678999999999875432 2
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
+..+...+|++++|+|+.++.+-. ....++...... ....|+++|+||+|+.... ..++... .+.
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~---------~~~ 145 (183)
T 1moz_A 79 WRCYYADTAAVIFVVDSTDKDRMS--TASKELHLMLQEEELQDAALLVFANKQDQPGAL--SASEVSK---------ELN 145 (183)
T ss_dssp GGGTTTTEEEEEEEEETTCTTTHH--HHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC--CHHHHHH---------HTT
T ss_pred HHHHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC--CHHHHHH---------HhC
Confidence 234567889999999997543322 233444444332 2347999999999986542 2222211 111
Q ss_pred Hc--C-CcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 175 LC--D-NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 175 ~~--~-~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
.. . ..+. ....|+.++.+++++++.|.+.+.++
T Consensus 146 ~~~~~~~~~~----~~~~Sa~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 146 LVELKDRSWS----IVASSAIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp TTTCCSSCEE----EEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred cccccCCceE----EEEccCCCCcCHHHHHHHHHHHHHhc
Confidence 11 1 1111 23456777899999999999887654
No 69
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.78 E-value=4.8e-18 Score=128.40 Aligned_cols=166 Identities=13% Similarity=0.092 Sum_probs=104.6
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEI 93 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~ 93 (225)
....++|+++|.+|+|||||+|++++...... ...++.......+.. ++. .+.+|||||.....
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~---------- 85 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTA---YVPTVFENFSHVMKY-KNEEFILHLWDTAGQEEYD---------- 85 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSS---CCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGT----------
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCc---cCCeeeeeeEEEEEE-CCEEEEEEEEECCCcHHHH----------
Confidence 45679999999999999999999998764211 122222222223344 444 56999999965332
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 171 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (225)
.....+...+|++++|+|+.++.+..+ ..++..+.... ...|+++|.||+|+......... .....+
T Consensus 86 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~-------~~~~~~ 154 (194)
T 3reg_A 86 -RLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI---DTAKTVLVGLKVDLRKDGSDDVT-------KQEGDD 154 (194)
T ss_dssp -TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTSEEEEEEECGGGCCTTTTCCC-------HHHHHH
T ss_pred -HHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccCCCCccc-------HHHHHH
Confidence 233456778999999999985433222 23444444432 23799999999998753211100 111344
Q ss_pred HHHHcCCc-EEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 172 ILQLCDNR-CVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 172 ~~~~~~~~-~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
+.+..+.. ++ ..|+.++.+++++++.|.+.+.++.
T Consensus 155 ~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 155 LCQKLGCVAYI------EASSVAKIGLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp HHHHHTCSCEE------ECBTTTTBSHHHHHHHHHHHHHCSC
T ss_pred HHHhcCCCEEE------EeecCCCCCHHHHHHHHHHHHHhcC
Confidence 55555544 33 3456677999999999998887654
No 70
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.78 E-value=5.2e-18 Score=129.17 Aligned_cols=166 Identities=16% Similarity=0.145 Sum_probs=101.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
...++|+|+|.+|+|||||+|+|++...... ..+..+.......+.+ ++ ..+.||||||.... .
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~ 92 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSER--QGSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQERF-----------R 92 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEE-TTEEEEEEEECCTTCGGG-----------H
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCC--CCCCcceEEEEEEEEE-CCEEEEEEEEECCCcHhH-----------H
Confidence 4468999999999999999999997664211 1122222333344455 44 48999999996532 1
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
..+..++..+|++|+|+|+.++.+... ..++..+..... ...|+++|.||+|+........++ .+++.
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~~~v~~~~---------~~~~~ 161 (201)
T 2hup_A 93 TITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG--SNIVQLLIGNKSDLSELREVSLAE---------AQSLA 161 (201)
T ss_dssp HHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCccccccccCHHH---------HHHHH
Confidence 223344567899999999974322211 233344443321 247999999999986532111111 34455
Q ss_pred HHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158 174 QLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG 213 (225)
Q Consensus 174 ~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~ 213 (225)
...+. .++ ..|+.++.+++++++.|.+.+.++..
T Consensus 162 ~~~~~~~~~------~~SA~~g~gi~~l~~~l~~~i~~~~~ 196 (201)
T 2hup_A 162 EHYDILCAI------ETSAKDSSNVEEAFLRVATELIMRHG 196 (201)
T ss_dssp HHTTCSEEE------ECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred HHcCCCEEE------EEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 55554 332 34556678999999999888776644
No 71
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.78 E-value=6.4e-18 Score=124.21 Aligned_cols=162 Identities=19% Similarity=0.132 Sum_probs=88.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
.++|+++|.+|+|||||+|++.+...... ....+.+.. ....+. ....+.+|||||..... ...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~~-----------~~~ 66 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTYD---RSIVVDGEEASLMVYDIWEQDGGR-----------WLP 66 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEE---EEEEETTEEEEEEEEECC--------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccceE---EEEEECCEEEEEEEEECCCCccch-----------hhh
Confidence 47999999999999999999998764322 222333332 122331 22378899999976432 222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
..+...+|++++|+|++++.+... ..++..+.... .....|+++|.||+|+........++ ...+....
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 136 (166)
T 3q72_A 67 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRAR-QTDDVPIILVGNKSDLVRSREVSVDE---------GRACAVVF 136 (166)
T ss_dssp ------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCSCHHH---------HHHHHHHT
T ss_pred hhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEeccccccccccCHHH---------HHHHHHHh
Confidence 335567899999999974422221 12223333221 12347999999999987543112111 23344444
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
+.+++ ..|+.++.+++++++.|.+.+.+.
T Consensus 137 ~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 137 DCKFI------ETSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp TCEEE------ECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred CCcEE------EeccCCCCCHHHHHHHHHHHHHhc
Confidence 54332 346677799999999998887654
No 72
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=2.5e-18 Score=126.90 Aligned_cols=164 Identities=18% Similarity=0.130 Sum_probs=97.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
+.++|+++|.+|+|||||+|+|++...........+.+. ...... ++ ..+.+|||||..+.. .....
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~~~Dt~G~~~~~-------~~~~~ 70 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY---RQVISC-DKSICTLQITDTTGSHQFP-------AMQRL 70 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE---EEEEEE-TTEEEEEEEEECCSCSSCH-------HHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE---EEEEEE-CCEEEEEEEEECCCchhhH-------HHHHH
Confidence 358999999999999999999998764322111111111 112222 33 368999999976541 11112
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
+...+|++++|+|++++.+... ..++..+.+........|+++|+||+|+......... ....+..
T Consensus 71 ----~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~---------~~~~~~~ 137 (172)
T 2erx_A 71 ----SISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSS---------EAEALAR 137 (172)
T ss_dssp ----HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHH---------HHHHHHH
T ss_pred ----hcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHH---------HHHHHHH
Confidence 2234699999999974322221 3344555554322234799999999997654311111 1233444
Q ss_pred HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
..+..++ ..|+.++.+++++++.|.+.+.++
T Consensus 138 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~~ 168 (172)
T 2erx_A 138 TWKCAFM------ETSAKLNHNVKELFQELLNLEKRR 168 (172)
T ss_dssp HHTCEEE------ECBTTTTBSHHHHHHHHHHTCCSS
T ss_pred HhCCeEE------EecCCCCcCHHHHHHHHHHHHhhh
Confidence 4454333 345566789999999998766543
No 73
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.78 E-value=4.1e-18 Score=125.32 Aligned_cols=160 Identities=17% Similarity=0.090 Sum_probs=99.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
..++|+++|.+|+|||||+|+|++...... ..+..+.......+.+ ++ ..+.+|||||..+.....
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~--------- 71 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKD--YKKTIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDAIT--------- 71 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCC--SSCCCSSSEEEEEEEE-TTEEEEEEEECCTTGGGTTCCC---------
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCC--CCCceEEEEEEEEEEE-CCEEEEEEEEcCCCcHhHHHHH---------
Confidence 468999999999999999999997664222 1222222333334444 33 379999999976443211
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
..+...+|++++|+|++++.+... ..++..+.... ...|+++|+||+|.........++ ..++.+
T Consensus 72 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 137 (168)
T 1z2a_A 72 --KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDDSCIKNEE---------AEGLAK 137 (168)
T ss_dssp --HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGGCSSCHHH---------HHHHHH
T ss_pred --HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCcccccCHHH---------HHHHHH
Confidence 123457799999999974322111 22333343332 247999999999986543111111 344555
Q ss_pred HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
..+.+++ ..|+.++.+++++++.|.+.+.
T Consensus 138 ~~~~~~~------~~Sa~~~~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 138 RLKLRFY------RTSVKEDLNVSEVFKYLAEKHL 166 (168)
T ss_dssp HHTCEEE------ECBTTTTBSSHHHHHHHHHHHH
T ss_pred HcCCeEE------EEecCCCCCHHHHHHHHHHHHh
Confidence 5555433 3455667899999999987664
No 74
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.78 E-value=2.3e-19 Score=150.68 Aligned_cols=169 Identities=16% Similarity=0.161 Sum_probs=111.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
....++|+|+|++|+|||||+|+|++...... ...+++|.......+.+.+...+.||||||+.++............
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~-~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~- 108 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIV-SDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKAR- 108 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHH-
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCcc-CCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHH-
Confidence 45678999999999999999999998875433 3456677777777777733449999999999876543222222222
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
.....+|++|+|+|+ .....+..++..+.+. ..|+++|+||+|....... +. ..++.+.
T Consensus 109 ---~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~~~~~---~~--------~~~l~~~ 167 (423)
T 3qq5_A 109 ---RVFYRADCGILVTDS--APTPYEDDVVNLFKEM-----EIPFVVVVNKIDVLGEKAE---EL--------KGLYESR 167 (423)
T ss_dssp ---HHHTSCSEEEEECSS--SCCHHHHHHHHHHHHT-----TCCEEEECCCCTTTTCCCT---HH--------HHHSSCC
T ss_pred ---HHHhcCCEEEEEEeC--CChHHHHHHHHHHHhc-----CCCEEEEEeCcCCCCccHH---HH--------HHHHHHH
Confidence 234467999999998 4556667777777764 3799999999998766421 11 1222222
Q ss_pred cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158 176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG 213 (225)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~ 213 (225)
++. .....|++++.+++++++.|.+.+++...
T Consensus 168 ~g~------~v~~vSAktg~gI~eL~~~L~~~l~~~~e 199 (423)
T 3qq5_A 168 YEA------KVLLVSALQKKGFDDIGKTISEILPGDEE 199 (423)
T ss_dssp TTC------CCCCCSSCCTTSTTTHHHHHHHHSCCCCC
T ss_pred cCC------CEEEEECCCCCCHHHHHHHHHHhhhhhcc
Confidence 232 34556778889999999999998866633
No 75
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.78 E-value=1e-18 Score=134.45 Aligned_cols=172 Identities=16% Similarity=0.198 Sum_probs=103.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI 93 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~ 93 (225)
....++|+|+|.+|+|||||+|+|++...........+.+. .........+ ..+.||||||.........
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~------ 79 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVN--HPVTFLDDQGNVIKFNVWDTAGQEKKAVLKD------ 79 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEE--EEEEEEBTTSCEEEEEEEEECSGGGTSCCCH------
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceee--EEEEEEeCCCcEEEEEEEecCCchhhchHHH------
Confidence 35679999999999999999999997764322111222222 2222222122 4699999999765432222
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 172 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~ 172 (225)
.....+|++|+|+|+.++.+..+ ..++..+...... ..|+++|+||+|+........+ ...++
T Consensus 80 -----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~~---------~~~~~ 143 (218)
T 4djt_A 80 -----VYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGN--EAPIVVCANKIDIKNRQKISKK---------LVMEV 143 (218)
T ss_dssp -----HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCS--SSCEEEEEECTTCC----CCHH---------HHHHH
T ss_pred -----HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccccccCHH---------HHHHH
Confidence 23446899999999985433222 2344455444332 3799999999997644211111 12233
Q ss_pred HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCCC
Q 036158 173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYT 217 (225)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~~ 217 (225)
....+..++ ..|+.++.+++++++.|.+.+.+.....+.
T Consensus 144 ~~~~~~~~~------~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~~ 182 (218)
T 4djt_A 144 LKGKNYEYF------EISAKTAHNFGLPFLHLARIFTGRPDLIFV 182 (218)
T ss_dssp TTTCCCEEE------EEBTTTTBTTTHHHHHHHHHHHCCTTCCBC
T ss_pred HHHcCCcEE------EEecCCCCCHHHHHHHHHHHHhcccccccc
Confidence 333333333 345566789999999999999887665543
No 76
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.78 E-value=5.3e-18 Score=128.02 Aligned_cols=168 Identities=11% Similarity=0.068 Sum_probs=103.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCC------CCCceeEEEEEEEE---e-eCCceEEEEeCCCCCCCCCC
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAG------SSGVTKTCEMQRTM---L-KDGQVVNVIDTPGLFDSSAD 85 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~---~-~~~~~~~liDtPG~~~~~~~ 85 (225)
....++|+|+|.+|+|||||+|.+.+......... ....|......... . .....+.+|||||.....
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-- 88 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN-- 88 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS--
T ss_pred cccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH--
Confidence 35579999999999999999998887553221110 01223333332221 1 012379999999987542
Q ss_pred cHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc----ccccccEEEEEecCCCCCCCcccHHHHh
Q 036158 86 SEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFG----KKISDYMIVVFTGGDELEDNDETLEDYL 161 (225)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~vv~~k~D~~~~~~~~~~~~~ 161 (225)
..+..++..+|++|+|+|+.++......+.++.+..++. .....|+++|.||+|+.... ..++
T Consensus 89 ---------~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~--~~~~-- 155 (198)
T 3t1o_A 89 ---------ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDAL--PVEM-- 155 (198)
T ss_dssp ---------HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCC--CHHH--
T ss_pred ---------HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccccc--CHHH--
Confidence 122235668899999999975444444444444433322 12357999999999976542 2221
Q ss_pred hhcCCchHHHHHHHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 162 GRECPKPLKEILQLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 162 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
+++.++..+. .+ ...|+.++.+++++++.|.+.+.++
T Consensus 156 -------~~~~~~~~~~~~~------~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 156 -------VRAVVDPEGKFPV------LEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp -------HHHHHCTTCCSCE------EECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHhcCCceE------EEEecCCCcCHHHHHHHHHHHHHHH
Confidence 3444444443 22 2456677899999999998877664
No 77
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.78 E-value=6.2e-18 Score=129.73 Aligned_cols=120 Identities=18% Similarity=0.224 Sum_probs=76.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKD--GQVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
...++|+++|.+|+|||||+|+|++.... .. ..+++ .....+.+.+ +..+.+|||||... +.
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~ 68 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYR-DT--QTSIT--DSSAIYKVNNNRGNSLTLIDLPGHES-----------LR 68 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCC-CB--CCCCS--CEEEEEECSSTTCCEEEEEECCCCHH-----------HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcc-cc--cCCcc--eeeEEEEecCCCccEEEEEECCCChh-----------HH
Confidence 45689999999999999999999977632 21 22222 2333355522 56899999999752 12
Q ss_pred H-HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc----cccccEEEEEecCCCCCCC
Q 036158 95 K-CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK----KISDYMIVVFTGGDELEDN 153 (225)
Q Consensus 95 ~-~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~vv~~k~D~~~~~ 153 (225)
. .+..++..+|++|+|+|+.+ .........+++...+.. ....|+++|+||+|+....
T Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 69 FQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp HHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred HHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 2 23334667899999999973 222233344444433221 2347999999999987654
No 78
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.78 E-value=1.7e-17 Score=123.22 Aligned_cols=165 Identities=16% Similarity=0.073 Sum_probs=101.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
...++|+++|.+|+|||||+|++++...... ..+..+.......+.+ ++ ..+.+|||||.... .
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~ 70 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQ--LFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERF-----------R 70 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEEE-TTEEEEEEEEECCCCGGG-----------H
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCceeeeEEEEEEEE-CCEEEEEEEEeCCCchhh-----------h
Confidence 4568999999999999999999997664222 1222233333344455 44 38999999996432 2
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 171 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (225)
..+..+...+|++++|+|++++.+... ..++..+...... ....|+++|+||+|..... ...++ ..+
T Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-~~~~~---------~~~ 140 (177)
T 1wms_A 71 SLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-VSTEE---------AQA 140 (177)
T ss_dssp HHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-SCHHH---------HHH
T ss_pred hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccc-cCHHH---------HHH
Confidence 334456778899999999974432221 2334444443321 1347999999999986321 11221 233
Q ss_pred HHH-HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 172 ILQ-LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 172 ~~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
+.. ..+..++ ..|+.++.+++++++.|.+.+.+.
T Consensus 141 ~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 141 WCRDNGDYPYF------ETSAKDATNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp HHHHTTCCCEE------ECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred HHHhcCCceEE------EEeCCCCCCHHHHHHHHHHHHHhh
Confidence 333 2233332 345567799999999998877553
No 79
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.77 E-value=2.1e-18 Score=139.41 Aligned_cols=169 Identities=15% Similarity=0.193 Sum_probs=111.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCC-CCCCCcHHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF-DSSADSEFVSKEIVKC 96 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~-~~~~~~~~~~~~~~~~ 96 (225)
...+|+++|++|+|||||+|+|++....... ..+++|+......+.. ++..+.++||||+. .. ...+...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s-~~~~tTr~~~~gi~~~-~~~~i~~iDTpG~~~~~---~~~l~~~~~~~ 81 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITS-RKAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEE---KRAINRLMNKA 81 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECC-CCSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHH---HHHHHHHHTCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccC-CCCCcceeeEEEEEEE-CCeeEEEEECcCCCccc---hhhHHHHHHHH
Confidence 3468999999999999999999998764432 2344555444444555 67899999999986 21 11222233334
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
+..+...+|++++|+|+.+ ++..+..+++.+.. ...|+++++||+|..... ..+.+. +.++.+..
T Consensus 82 ~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~-----~~~P~ilvlNK~D~~~~~-~~~~~~--------l~~l~~~~ 146 (301)
T 1ega_A 82 ASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE-----GKAPVILAVNKVDNVQEK-ADLLPH--------LQFLASQM 146 (301)
T ss_dssp TTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS-----SSSCEEEEEESTTTCCCH-HHHHHH--------HHHHHTTS
T ss_pred HHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh-----cCCCEEEEEECcccCccH-HHHHHH--------HHHHHHhc
Confidence 4566788999999999985 88777766655542 237999999999976421 122222 23333333
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
+.. ...+.|+.++.++++|++.|.+.+++.
T Consensus 147 ~~~-----~~i~iSA~~g~~v~~l~~~i~~~l~~~ 176 (301)
T 1ega_A 147 NFL-----DIVPISAETGLNVDTIAAIVRKHLPEA 176 (301)
T ss_dssp CCS-----EEEECCTTTTTTHHHHHHHHHTTCCBC
T ss_pred CcC-----ceEEEECCCCCCHHHHHHHHHHhCCcC
Confidence 321 123446667789999999998776543
No 80
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.77 E-value=3.1e-18 Score=128.07 Aligned_cols=164 Identities=15% Similarity=0.110 Sum_probs=82.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
...++|+|+|.+|+|||||+|+|++...... ..++.+.......+.+ ++ ..+.||||||.... .
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~ 71 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNST--FISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERF-----------R 71 (183)
T ss_dssp SEEEEEEEECCCCC----------------C--HHHHHCEEEEEEEEEE-TTEEEEEEEEEC------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCcccceeEEEEEEE-CCEEEEEEEEcCCCChhh-----------h
Confidence 3468999999999999999999997653211 1222333344444555 45 57999999997533 2
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
..+..+...+|++|+|+|+.++.+... ..++..+..... ...|+++|.||+|+........++ ..++.
T Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~~~---------~~~~~ 140 (183)
T 2fu5_C 72 TITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS--ADVEKMILGNKCDVNDKRQVSKER---------GEKLA 140 (183)
T ss_dssp --CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEEC--CCSCCCSCHHH---------HHHHH
T ss_pred hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccCCccCcCCHHH---------HHHHH
Confidence 233456678999999999975322221 223333333221 247999999999986543111111 34444
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
+..+.+++ ..|+.++.+++++++.|.+.+.++
T Consensus 141 ~~~~~~~~------~~Sa~~~~~i~~l~~~l~~~i~~~ 172 (183)
T 2fu5_C 141 LDYGIKFM------ETSAKANINVENAFFTLARDIKAK 172 (183)
T ss_dssp HHHTCEEE------ECCC---CCHHHHHHHHHHHHHHH
T ss_pred HHcCCeEE------EEeCCCCCCHHHHHHHHHHHHHHH
Confidence 55554433 345567789999999988777553
No 81
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=1.6e-18 Score=130.76 Aligned_cols=167 Identities=12% Similarity=0.044 Sum_probs=102.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
...++|+|+|.+|+|||||+|+|++...........+.+.......... ....+.||||||.. .+...
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~-----------~~~~~ 88 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHE-KRVKLQIWDTAGQE-----------RYRTI 88 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETT-TTEEEEEECHHHHH-----------HCHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECC-EEEEEEEEeCCChH-----------HHHHH
Confidence 4578999999999999999999997653222111112222222222222 34579999999943 22333
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
...+...+|++|+|+|+.++.+.. ...+++.+..... ...|+++|+||+|+........++ .+.+...
T Consensus 89 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~ 157 (191)
T 3dz8_A 89 TTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSW--DNAQVILVGNKCDMEEERVVPTEK---------GQLLAEQ 157 (191)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred HHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccccccCHHH---------HHHHHHH
Confidence 444566789999999997432221 1234444444321 247999999999975443111111 3344455
Q ss_pred cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
.+..++ ..|+.++.+++++++.|.+.+.+..
T Consensus 158 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 158 LGFDFF------EASAKENISVRQAFERLVDAICDKM 188 (191)
T ss_dssp HTCEEE------ECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred cCCeEE------EEECCCCCCHHHHHHHHHHHHHHhc
Confidence 555433 3455667899999999988876653
No 82
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.77 E-value=5.2e-18 Score=127.61 Aligned_cols=164 Identities=13% Similarity=0.107 Sum_probs=104.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
.+.++|+++|.+|+|||||+|++.+...... . .|.......+.+ ++..+.+|||||.......
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~----~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~----------- 82 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTT-V----PTVGVNLETLQY-KNISFEVWDLGGQTGVRPY----------- 82 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEE-C----SSTTCCEEEEEE-TTEEEEEEEECCSSSSCCC-----------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCc-C----CCCceEEEEEEE-CCEEEEEEECCCCHhHHHH-----------
Confidence 4679999999999999999999987664322 1 122233344555 6789999999998754321
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
+..+...+|++++|+|+.++.+-.. ...++.+.... ....|+++|+||+|+.... ..++.... +. ..
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~-----~~--~~ 151 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGV--AKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQ-----LG--VS 151 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHH--HHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHH-----TT--GG
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHH--HHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHH-----hC--hh
Confidence 2245678899999999975433222 23334443322 1247999999999987553 22322222 00 01
Q ss_pred HcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 175 LCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 175 ~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
.+.. .+. ....|+.++.+++++++.|.+.+.+..
T Consensus 152 ~~~~~~~~----~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 186 (189)
T 2x77_A 152 SIMNRTWT----IVKSSSKTGDGLVEGMDWLVERLREQG 186 (189)
T ss_dssp GCCSSCEE----EEECCTTTCTTHHHHHHHHHHHHHHTC
T ss_pred hccCCceE----EEEccCCCccCHHHHHHHHHHHHHhcc
Confidence 1111 122 224566777999999999998887754
No 83
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.77 E-value=6.2e-18 Score=125.69 Aligned_cols=168 Identities=15% Similarity=0.073 Sum_probs=102.6
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC---ceEEEEeCCCCCCCCCCcHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG---QVVNVIDTPGLFDSSADSEFVSKE 92 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~liDtPG~~~~~~~~~~~~~~ 92 (225)
....++|+++|.+|+|||||+|+|++....... .+..+.......+.+ ++ ..+.+|||||.......
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~~~~~------- 72 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQY--KQTIGLDFFLRRITL-PGNLNVTLQIWDIGGQTIGGKM------- 72 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHH--HHTTTSSEEEEEEEE-TTTEEEEEEEEECTTCCTTCTT-------
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCC--CCceeEEEEEEEEEe-CCCCEEEEEEEECCCCccccch-------
Confidence 346799999999999999999999976642111 112222333444555 33 58999999997654321
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhccccccc-EEEEEecCCCCCCCcccHHHHhhhcCCchHH
Q 036158 93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLEDYLGRECPKPLK 170 (225)
Q Consensus 93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~-~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~ 170 (225)
+..+...+|++++|+|+.++.+..+ ..++..+..........| +++|.||+|+........++ ..
T Consensus 73 ----~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~---------~~ 139 (178)
T 2hxs_A 73 ----LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEK---------HL 139 (178)
T ss_dssp ----HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHH---------HH
T ss_pred ----hhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHH---------HH
Confidence 1123457899999999974432222 233344444322111244 78999999976432111111 33
Q ss_pred HHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 171 EILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
++.+..+..++ ..|+.++.+++++++.|.+.+.+..
T Consensus 140 ~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 140 RFCQENGFSSH------FVSAKTGDSVFLCFQKVAAEILGIK 175 (178)
T ss_dssp HHHHHHTCEEE------EECTTTCTTHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCcEE------EEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 44444454433 3455667899999999988776543
No 84
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.77 E-value=4.5e-18 Score=128.02 Aligned_cols=165 Identities=14% Similarity=0.098 Sum_probs=97.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI 93 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~ 93 (225)
....++|+|+|.+|+|||||+|+|++....... .+..+.......+.+ ++ ..+.||||||..+ +
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~ 82 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRT--EATIGVDFRERAVDI-DGERIKIQLWDTAGQER-----------F 82 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSC--CCCCSCCEEEEEEEE-TTEEEEEEEEECCCSHH-----------H
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCCcceEEEEEEEEE-CCEEEEEEEEECCCchh-----------h
Confidence 456799999999999999999999976643222 222233333344444 44 4799999999532 2
Q ss_pred H-HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158 94 V-KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 171 (225)
Q Consensus 94 ~-~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (225)
. ..+..+...+|++|+|+|+.+..+... ..++..+..... ....|+++|+||+|+........+ ..++
T Consensus 83 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~---------~~~~ 152 (189)
T 1z06_A 83 RKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSAIQVPTD---------LAQK 152 (189)
T ss_dssp HTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGGCCSCHH---------HHHH
T ss_pred hhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceeCHH---------HHHH
Confidence 2 223334567899999999974322211 223444444321 234799999999998643211111 1334
Q ss_pred HHHHcCCcEEEeeCCCccccccH---HHHHHHHHHHHHHHHH
Q 036158 172 ILQLCDNRCVLFDNKTKDTAKRT---EQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~---~~v~~l~~~i~~~~~~ 210 (225)
+....+..++. .|+.++ .+++++++.|.+.+.+
T Consensus 153 ~~~~~~~~~~~------~Sa~~~~~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 153 FADTHSMPLFE------TSAKNPNDNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp HHHHTTCCEEE------CCSSSGGGGSCHHHHHHHHC-----
T ss_pred HHHHcCCEEEE------EeCCcCCcccCHHHHHHHHHHHHhh
Confidence 44455544433 344555 7899999988766543
No 85
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.77 E-value=1.1e-17 Score=128.56 Aligned_cols=162 Identities=12% Similarity=0.083 Sum_probs=100.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeE--EEEEEEEeeC-----------CceEEEEeCCCCCCCC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKT--CEMQRTMLKD-----------GQVVNVIDTPGLFDSS 83 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~~~-----------~~~~~liDtPG~~~~~ 83 (225)
...++|+|+|.+|+|||||+|+|++..... ....|.. .....+.+.. ...+.||||||..
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~--- 95 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNP----KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE--- 95 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCC----EEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH---
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCc----CCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH---
Confidence 446899999999999999999999866421 1122222 2222333422 3579999999942
Q ss_pred CCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCCcccHHHHh
Q 036158 84 ADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYL 161 (225)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~vv~~k~D~~~~~~~~~~~~~ 161 (225)
.+...+..++..+|++|+|+|+.+..+ ......++..+.... ...|+++|+||+|+........+
T Consensus 96 --------~~~~~~~~~~~~~d~iilV~D~~~~~s--~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~--- 162 (217)
T 2f7s_A 96 --------RFRSLTTAFFRDAMGFLLMFDLTSQQS--FLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNER--- 162 (217)
T ss_dssp --------HHHHHHHHHHTTCCEEEEEEETTCHHH--HHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHH---
T ss_pred --------hHHhHHHHHhcCCCEEEEEEECcCHHH--HHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHH---
Confidence 233344455678899999999974322 122334444432211 34799999999998643211111
Q ss_pred hhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 162 GRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
...++....+..++. .|+.++.+++++++.|.+.+.+
T Consensus 163 ------~~~~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 163 ------QARELADKYGIPYFE------TSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp ------HHHHHHHHTTCCEEE------EBTTTTBTHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHCCCcEEE------EECCCCCCHHHHHHHHHHHHHH
Confidence 134455555655443 3455668999999998877655
No 86
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.77 E-value=3e-18 Score=127.32 Aligned_cols=162 Identities=15% Similarity=0.093 Sum_probs=99.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
.+.++|+|+|.+|+|||||+|+|++...... ..+..+.......+.+ ++ ..+.+|||||......
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~---------- 78 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNT--YQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRS---------- 78 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSS--CCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGG----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHHH----------
Confidence 4568999999999999999999997664322 2333344444445555 44 3799999999653321
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
.+..+...+|++++|+|+.++.+.. ...++..+..... ...|+++|+||+|+........++ .....
T Consensus 79 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~ 146 (179)
T 2y8e_A 79 -LIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG--SDVIIMLVGNKTDLSDKRQVSTEE---------GERKA 146 (179)
T ss_dssp -GSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSSEEEEEEECGGGGGGCCSCHHH---------HHHHH
T ss_pred -HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccccCcCCHHH---------HHHHH
Confidence 1112334679999999997432211 1233344443322 247899999999976543111111 23344
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
...+..++. .|+.++.+++++++.|.+.+.
T Consensus 147 ~~~~~~~~~------~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 147 KELNVMFIE------TSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp HHHTCEEEE------EBTTTTBSHHHHHHHHHHTCC
T ss_pred HHcCCeEEE------EeCCCCCCHHHHHHHHHHHHh
Confidence 444544433 345566899999999876553
No 87
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.77 E-value=3.2e-18 Score=126.20 Aligned_cols=164 Identities=20% Similarity=0.138 Sum_probs=93.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
.++|+++|.+|+|||||+|+|++....... ....+.......+.+ ++ ..+.+|||||..+.... +.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~-------~~-- 69 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAH--EMENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGGW-------LQ-- 69 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEE-TTEEEEEEEECCCCC-----------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccc--cCCCcCCeeeEEEEE-CCeEEEEEEEECCCccccchh-------hh--
Confidence 478999999999999999999876543221 222334444444445 44 36889999998754210 11
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
..+...+|++++|+|++++.+... ..++..+..... ....|+++|.||+|+........++ ..++.+.
T Consensus 70 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~~ 138 (169)
T 3q85_A 70 -DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREVSLEE---------GRHLAGT 138 (169)
T ss_dssp -CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred -hhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhccc-CCCCCEEEEeeCcchhhcccCCHHH---------HHHHHHH
Confidence 111224699999999974322111 123333333221 1247999999999976433112111 3445555
Q ss_pred cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
.+..++ ..|+.++.+++++++.+.+.+...
T Consensus 139 ~~~~~~------~~Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 139 LSCKHI------ETSAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp TTCEEE------ECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred cCCcEE------EecCccCCCHHHHHHHHHHHHHhc
Confidence 555433 345667799999999998877654
No 88
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.77 E-value=1.3e-17 Score=125.15 Aligned_cols=169 Identities=15% Similarity=0.227 Sum_probs=108.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
..+.++|+++|++|+|||||+|+|++...... ..++.|.......+.+ ++..+.+|||||......... .+.+..
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~--~~~~~~ 78 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIG--NWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSI--DEIIAR 78 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEE--ECTTSCCEEEEEEEEE-TTEEEEEEECCCCSCCSSSSH--HHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccc--CCCCeeccceEEEEEe-CCcEEEEEECCCcCccccccH--HHHHHH
Confidence 34678999999999999999999998764322 2345566666666777 788999999999886642211 111211
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
.... ...+|++++|+|..+ + . ....++..... ...|+++|.||+|..... . ......++.+.
T Consensus 79 ~~~~-~~~~~~~i~v~d~~~-~-~---~~~~~~~~~~~--~~~piilv~nK~Dl~~~~--~--------~~~~~~~~~~~ 140 (188)
T 2wjg_A 79 DYII-NEKPDLVVNIVDATA-L-E---RNLYLTLQLME--MGANLLLALNKMDLAKSL--G--------IEIDVDKLEKI 140 (188)
T ss_dssp HHHH-HHCCSEEEEEEEGGG-H-H---HHHHHHHHHHT--TTCCEEEEEECHHHHHHT--T--------CCCCHHHHHHH
T ss_pred HHHh-ccCCCEEEEEecchh-H-H---HHHHHHHHHHh--cCCCEEEEEEhhhccccc--c--------chHHHHHHHHH
Confidence 1111 124699999999862 2 1 22333333322 247999999999965322 1 11224555555
Q ss_pred cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158 176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG 213 (225)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~ 213 (225)
++..++ ..|+..+.+++++++.+.+.+.+...
T Consensus 141 ~~~~~~------~~Sa~~~~~v~~l~~~i~~~~~~~~~ 172 (188)
T 2wjg_A 141 LGVKVV------PLSAAKKMGIEELKKAISIAVKDKKT 172 (188)
T ss_dssp HTSCEE------ECBGGGTBSHHHHHHHHHHHHTTC--
T ss_pred hCCCeE------EEEecCCCCHHHHHHHHHHHHHhccC
Confidence 565433 34566778999999999999887764
No 89
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.77 E-value=8.3e-17 Score=117.73 Aligned_cols=161 Identities=19% Similarity=0.180 Sum_probs=97.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
+.++|+++|.+|+|||||+|++++...... ...++.......+.. ++ ..+.+|||||..+.. ... ..
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~----~~~---~~ 70 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDE---CDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYS----AMR---DQ 70 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSC---CCTTCCEEEEEEEEE-TTEEEEEEEEECCCCSSCC----HHH---HH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccc---cCCccceEEEEEEEE-CCEEEEEEEEECCCchhhh----HHH---HH
Confidence 357899999999999999999997764222 122222222233344 33 358899999976542 111 11
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
+...+|++++|+++.+..+... ..++..+..... ....|+++|+||+|..... ...+. ..++.+
T Consensus 71 ----~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~nK~Dl~~~~--~~~~~--------~~~~~~ 135 (166)
T 2ce2_X 71 ----YMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDLAART--VESRQ--------AQDLAR 135 (166)
T ss_dssp ----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCC--SCHHH--------HHHHHH
T ss_pred ----hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEchhhhhcc--cCHHH--------HHHHHH
Confidence 2234699999999874322221 233344444322 1247999999999987532 11111 344555
Q ss_pred HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
..+.+++. .|+.++.+++++++.|.+.+.+
T Consensus 136 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 136 SYGIPYIE------TSAKTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp HHTCCEEE------ECTTTCTTHHHHHHHHHHHHHT
T ss_pred HcCCeEEE------ecCCCCCCHHHHHHHHHHHHHh
Confidence 55554443 3455668999999999887654
No 90
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.77 E-value=3.5e-18 Score=125.36 Aligned_cols=160 Identities=11% Similarity=0.047 Sum_probs=98.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (225)
++|+++|.+|+|||||+|++++...... ..|.......+.+ .+..+.+|||||.... ...+..
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~-----------~~~~~~ 63 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDKI-----------RPLWRH 63 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCC-----CCCSSCCEEEEEC-SSCEEEEEECCCCGGG-----------HHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcc-----cCcCceeEEEEEE-CCEEEEEEEcCCChhh-----------HHHHHH
Confidence 4799999999999999999987653211 1233333445555 6789999999997532 223334
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158 100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
+...+|++++|+|+.++.+-. ....++.+.... ....|+++|+||+|+.... ..++.... .. .....
T Consensus 64 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~-~~------~~~~~ 132 (164)
T 1r8s_A 64 YFQNTQGLIFVVDSNDRERVN--EAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDK-LG------LHSLR 132 (164)
T ss_dssp HTTTCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHH-TT------GGGCS
T ss_pred HhccCCEEEEEEECCCHHHHH--HHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHH-hC------ccccc
Confidence 567889999999997542222 233444444332 1247999999999986543 22222221 00 01111
Q ss_pred C-cEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 178 N-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 178 ~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
. .+. ....|+.++.+++++++.|.+.+.++
T Consensus 133 ~~~~~----~~~~Sa~~~~gi~~l~~~l~~~i~~~ 163 (164)
T 1r8s_A 133 HRNWY----IQATCATSGDGLYEGLDWLSNQLRNQ 163 (164)
T ss_dssp SCCEE----EEECBTTTTBTHHHHHHHHHHHC---
T ss_pred CccEE----EEEcccCCCcCHHHHHHHHHHHHhhc
Confidence 1 122 22456677899999999998776543
No 91
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=2.5e-17 Score=125.52 Aligned_cols=164 Identities=14% Similarity=0.127 Sum_probs=103.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
...++|+|+|.+|+|||||+|+|++...... ..+..+.......+.+ ++ ..+.||||||... +.
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~ 89 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPG--QGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQER-----------FR 89 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTT--CCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCC--CCCccceeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HH
Confidence 3468999999999999999999997664221 2223333444445555 44 3789999999642 23
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
.....++..+|++|+|+|+.++.+... ..++..+..... ...|+++|.||+|+........++ ..++.
T Consensus 90 ~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~~~v~~~~---------~~~~~ 158 (201)
T 2ew1_A 90 SITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS--NKVITVLVGNKIDLAERREVSQQR---------AEEFS 158 (201)
T ss_dssp HHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCSSCHHH---------HHHHH
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccccccCHHH---------HHHHH
Confidence 334566788999999999974322211 233444444322 247899999999986432111111 23344
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
...+..++ ..|+.++.+++++++.|.+.+.+.
T Consensus 159 ~~~~~~~~------~~Sa~~g~gv~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 159 EAQDMYYL------ETSAKESDNVEKLFLDLACRLISE 190 (201)
T ss_dssp HHHTCCEE------ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHcCCEEE------EEeCCCCCCHHHHHHHHHHHHHHH
Confidence 44454333 345667799999999998777554
No 92
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.77 E-value=2.1e-18 Score=131.64 Aligned_cols=167 Identities=16% Similarity=0.029 Sum_probs=99.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEI 93 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~ 93 (225)
..+.++|+++|.+|+|||||++++++...... ..+++.......+.+ ++. .+.+|||||.....
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~---------- 92 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGE---YIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYD---------- 92 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC----CCCCSEEEEEEEEEC-C-CEEEEEEEEECCSGGGT----------
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCC---cCCeecceeEEEEEE-CCEEEEEEEEECCCchhhH----------
Confidence 35679999999999999999999996654222 223333333334444 444 45699999975432
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh-----cCC
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR-----ECP 166 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~-----~~~ 166 (225)
.....+...+|++++|+|++++.+..+. .++..+.... ...|+++|+||+|+.... ...+...+ ...
T Consensus 93 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~ 166 (204)
T 4gzl_A 93 -RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDK--DTIEKLKEKKLTPITY 166 (204)
T ss_dssp -TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHTCH--HHHHHHHHTTCCCCCH
T ss_pred -HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhccch--hhhhhhhccccccccH
Confidence 2233466789999999999854333332 3444444432 248999999999987543 21111111 011
Q ss_pred chHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158 167 KPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV 207 (225)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~ 207 (225)
.....+.+..+... ....||.++.+++++++.|.+.
T Consensus 167 ~~~~~~~~~~~~~~-----~~~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 167 PQGLAMAKEIGAVK-----YLECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp HHHHHHHHHTTCSE-----EEECCTTTCTTHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcE-----EEEeeCCCCCCHHHHHHHHHHH
Confidence 11333444444321 2234666779999999998654
No 93
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.77 E-value=6.2e-17 Score=120.38 Aligned_cols=168 Identities=18% Similarity=0.177 Sum_probs=101.7
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHH
Q 036158 15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKE 92 (225)
Q Consensus 15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~ 92 (225)
+....++|+|+|.+|+|||||+|+|++...... ..+++.......+.+ ++ ..+.+|||||..+......
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~----- 75 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSD---YDPTIEDSYTKICSV-DGIPARLDILDTAGQEEFGAMRE----- 75 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSS---CCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCCHH-----
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccc---cCCCcCceEEEEEEE-CCEEEEEEEEECCCchhhHHHHH-----
Confidence 345679999999999999999999998753221 222232222234444 44 3788999999875532211
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158 93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 171 (225)
Q Consensus 93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (225)
. +...+|++++|+|+.++.+... ..++..+..... ....|+++|+||+|+........++ ...
T Consensus 76 --~----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~---------~~~ 139 (181)
T 2fn4_A 76 --Q----YMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD-RDDFPVVLVGNKADLESQRQVPRSE---------ASA 139 (181)
T ss_dssp --H----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-SSCCCEEEEEECGGGGGGCCSCHHH---------HHH
T ss_pred --H----HHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccCHHH---------HHH
Confidence 1 1234699999999974322121 123333322221 1247999999999986543111111 233
Q ss_pred HHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158 172 ILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG 213 (225)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~ 213 (225)
+....+..++ ..|+.++.+++++++.|.+.+.+...
T Consensus 140 ~~~~~~~~~~------~~Sa~~~~gv~~l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 140 FGASHHVAYF------EASAKLRLNVDEAFEQLVRAVRKYQE 175 (181)
T ss_dssp HHHHTTCEEE------ECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCeEE------EecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 4444444333 34556678999999999988876643
No 94
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.77 E-value=2e-17 Score=127.16 Aligned_cols=171 Identities=18% Similarity=0.134 Sum_probs=94.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
...++|+++|.+|+|||||+|+|++...... ...++.......+.+ ++. .+.||||||..+..
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~----------- 96 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPES---YTPTVFERYMVNLQV-KGKPVHLHIWDTAGQDDYD----------- 96 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC----------CCCCCEEEEEEEEE-TTEEEEEEEEEC------------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCC---CCCccceeEEEEEEE-CCEEEEEEEEECCCchhhh-----------
Confidence 4568999999999999999999998764221 112222222333444 343 78999999965432
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh-----cCCc
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR-----ECPK 167 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~-----~~~~ 167 (225)
.....+...+|++++|+|+.++.+.... .++..+.... ...|+++|+||+|+.... ...+.... ....
T Consensus 97 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~ 171 (214)
T 2j1l_A 97 RLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC---KKVPIIVVGCKTDLRKDK--SLVNKLRRNGLEPVTYH 171 (214)
T ss_dssp --------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECGGGGSCH--HHHHHHHHTTCCCCCHH
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhhccc--hhhhhhcccccCcccHH
Confidence 2223456688999999999744222221 2344444332 237999999999987653 22221110 0111
Q ss_pred hHHHHHHHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158 168 PLKEILQLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG 213 (225)
Q Consensus 168 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~ 213 (225)
...++.+..+. .++ ..|+.++.+++++++.|.+.+.+..+
T Consensus 172 ~~~~~~~~~~~~~~~------~~SA~~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 172 RGQEMARSVGAVAYL------ECSARLHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp HHHHHHHHTTCSEEE------ECBTTTTBSHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhcCCCEEE------EecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 23445555554 333 34556778999999999988876643
No 95
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.77 E-value=2.6e-18 Score=128.56 Aligned_cols=159 Identities=13% Similarity=0.094 Sum_probs=97.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
..+.++|+++|.+|+|||||+|+|++...... ....+. ....+.+ ++..+.+|||||..... .
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~t~~~----~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~ 80 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGS----NVEEIVI-NNTRFLMWDIGGQESLR-----------S 80 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCEEE-ECCSSS----SCEEEEE-TTEEEEEEEESSSGGGT-----------C
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCcc-CCcCce----eeEEEEE-CCEEEEEEECCCCHhHH-----------H
Confidence 45679999999999999999999998775222 112222 2234455 67899999999975432 2
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
.+..+...+|++++|+|+.++.+... ...++...... ....|+++|+||+|+.... ..++..+. .. +
T Consensus 81 ~~~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~-~~------~ 149 (181)
T 2h17_A 81 SWNTYYTNTEFVIVVVDSTDRERISV--TREELYKMLAHEDLRKAGLLIFANKQDVKECM--TVAEISQF-LK------L 149 (181)
T ss_dssp GGGGGGTTCCEEEEEEETTCTTTHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHH-TT------G
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhChhhCCCeEEEEEECCCcccCC--CHHHHHHH-hC------c
Confidence 23345678899999999975533322 23333333322 1347999999999986542 22222111 00 0
Q ss_pred HHcC-CcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158 174 QLCD-NRCVLFDNKTKDTAKRTEQVGKLLSLVNS 206 (225)
Q Consensus 174 ~~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~i~~ 206 (225)
.... ..+.. ...|+.++.+++++++.|.+
T Consensus 150 ~~~~~~~~~~----~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 150 TSIKDHQWHI----QACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp GGCCSSCEEE----EECBTTTTBTHHHHHHHHHT
T ss_pred ccccCCceEE----EEccCCCCcCHHHHHHHHHh
Confidence 1111 11222 24566777999999998864
No 96
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.76 E-value=4.4e-18 Score=131.10 Aligned_cols=163 Identities=16% Similarity=0.126 Sum_probs=98.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
...++|+|+|.+|+|||||+++++..... ... .+....+........ ++ ..+.||||+|...+.
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~-~~~-~~Tig~d~~~k~~~~-~~~~v~l~iwDtaGqe~~~----------- 76 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFD-NTY-QATIGIDFLSKTMYL-EDRTIRLQLWDTAGLERFR----------- 76 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC------------CEEEEEEC-SSCEEEEEEECCSCTTTCG-----------
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCC-CCc-CCccceEEEEEEEEe-cceEEEEEEEECCCchhhh-----------
Confidence 45689999999999999999999866532 211 111122222223333 33 378899999977542
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
.....++..++++++|+|.+++-+-.. ..++..+....+. ..|+++|.||+|+.....-..++ ..++.
T Consensus 77 ~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~--~~piilVgNK~Dl~~~r~V~~~e---------~~~~a 145 (216)
T 4dkx_A 77 SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGS--DVIIMLVGNKTDLADKRQVSIEE---------GERKA 145 (216)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT--SSEEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred hHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCC--CCeEEEEeeccchHhcCcccHHH---------HhhHH
Confidence 222345678899999999985432222 2344444444333 37899999999976543212222 34455
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
+..+..++ .+||+++.+|+++++.|.+.+..
T Consensus 146 ~~~~~~~~------e~SAktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 146 KELNVMFI------ETSAKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp HHHTCEEE------EEBTTTTBSHHHHHHHHHHHC--
T ss_pred HHhCCeeE------EEeCCCCcCHHHHHHHHHHHHHh
Confidence 55565432 35677889999999998766543
No 97
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.76 E-value=1e-17 Score=127.36 Aligned_cols=164 Identities=14% Similarity=0.122 Sum_probs=96.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
...++|+|+|.+|+|||||+|+|++....... .+..+.......+.+ ++ ..+.||||||.... .
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~-----------~ 88 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDS--NHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQERF-----------R 88 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEEE-TTEEEEEEEECCTTHHHH-----------S
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccC--CCcccceeEEEEEEE-CCeeeEEEEEcCCCcHhH-----------H
Confidence 45699999999999999999999987643221 222232333334444 44 58999999995322 1
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
..+..+...+|++|+|+|+.++.+... ..++..+..... ...|+++|+||+|+.........+ ..++.
T Consensus 89 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~v~~~~---------~~~~~ 157 (200)
T 2o52_A 89 SVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS--PNIVVILCGNKKDLDPEREVTFLE---------ASRFA 157 (200)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC--TTCEEEEEEECGGGGGGCCSCHHH---------HHHHH
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCcccccccCHHH---------HHHHH
Confidence 222234567899999999974322221 223333333222 247999999999976432111111 23344
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
...+..++. .|+.++.+++++++.|.+.+.++
T Consensus 158 ~~~~~~~~~------~SA~~g~gi~~l~~~l~~~i~~~ 189 (200)
T 2o52_A 158 QENELMFLE------TSALTGENVEEAFLKCARTILNK 189 (200)
T ss_dssp HHTTCEEEE------ECTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHcCCEEEE------EeCCCCCCHHHHHHHHHHHHHHH
Confidence 444544333 35566789999999998776553
No 98
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.76 E-value=8e-18 Score=123.64 Aligned_cols=161 Identities=15% Similarity=0.122 Sum_probs=95.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
+.++|+++|.+|+|||||+|+|++...... ...++.......+.+. ....+.+|||||...... ... .
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----~~~---~- 70 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEK---YDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA----MRD---L- 70 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCS---CCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT----HHH---H-
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCC---CCCCccceEEEEEEECCEEEEEEEEECCChHHHHH----HHH---H-
Confidence 458999999999999999999997654221 1122222222233331 123789999999875431 111 1
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
+...+|++++|+|++++.+... ..+++.+..... ....|+++|+||+|+........++ ..++.+.
T Consensus 71 ---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~ 137 (167)
T 1c1y_A 71 ---YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDERVVGKEQ---------GQNLARQ 137 (167)
T ss_dssp ---HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred ---HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-cCCCcEEEEEECccccccccCCHHH---------HHHHHHH
Confidence 2234699999999974322121 233444444322 2347999999999986543111111 3334444
Q ss_pred c-CCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158 176 C-DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 176 ~-~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~ 208 (225)
. +..++ ..|+.++.+++++++.|.+.+
T Consensus 138 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 138 WCNCAFL------ESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp TTSCEEE------ECBTTTTBSHHHHHHHHHHHH
T ss_pred ccCCcEE------EecCCCCCCHHHHHHHHHHHH
Confidence 3 33322 345667789999999998765
No 99
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.76 E-value=5.9e-18 Score=128.91 Aligned_cols=169 Identities=16% Similarity=0.078 Sum_probs=76.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeC---CceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKD---GQVVNVIDTPGLFDSSADSEFVSKEI 93 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (225)
...++|+|+|.+|+|||||+|+|++..........+....+.....+.+++ ...+.||||||.. .+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----------~~ 86 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD-----------LY 86 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTH-----------HH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH-----------HH
Confidence 456899999999999999999999872111111111111123344455522 3479999999963 23
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccccEEEEEecCCCCC-CCcccHHHHhhhcCCchHH
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGK-KISDYMIVVFTGGDELE-DNDETLEDYLGRECPKPLK 170 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~~vv~~k~D~~~-~~~~~~~~~~~~~~~~~~~ 170 (225)
...+..+...+|++|+|+|+.++.+... ..++..+...... ....|+++|+||+|... ......+ ...
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~---------~~~ 157 (208)
T 2yc2_C 87 KEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLD---------MAQ 157 (208)
T ss_dssp HHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHH---------HHH
T ss_pred HHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHH---------HHH
Confidence 4455667788999999999974432222 2334444443220 02479999999999865 2211111 134
Q ss_pred HHHHHcCCcEEEeeCCCcccccc-HHHHHHHHHHHHHHHHHc
Q 036158 171 EILQLCDNRCVLFDNKTKDTAKR-TEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~i~~~~~~~ 211 (225)
++.+..+..++ ..|+.+ +.+++++++.|.+.+.+.
T Consensus 158 ~~~~~~~~~~~------~~Sa~~~~~gi~~l~~~i~~~~~~~ 193 (208)
T 2yc2_C 158 DWATTNTLDFF------DVSANPPGKDADAPFLSIATTFYRN 193 (208)
T ss_dssp HHHHHTTCEEE------ECCC-------CHHHHHHHHHHHHH
T ss_pred HHHHHcCCEEE------EeccCCCCcCHHHHHHHHHHHHHHH
Confidence 55555554333 345566 789999999998876554
No 100
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.76 E-value=1.4e-17 Score=126.18 Aligned_cols=176 Identities=14% Similarity=0.070 Sum_probs=98.2
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158 14 SPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI 93 (225)
Q Consensus 14 ~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (225)
.+....++|+++|.+|+|||||+|.+.+....... .....+.......+.......+.+|||||...+.......
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~---- 89 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNET-LFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDY---- 89 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGG-GGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCH----
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCcce-eeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhc----
Confidence 34567899999999999999999999885432211 1111122111111211144689999999987643221000
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcc--cHHHHhhhcCCchHHH
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDE--TLEDYLGRECPKPLKE 171 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~--~~~~~~~~~~~~~~~~ 171 (225)
..++..+|++|+|+|+.++.......+..++.+........|+++|.||+|+...... .......+ ...+
T Consensus 90 ----~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~----~~~~ 161 (196)
T 3llu_A 90 ----EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQR----ANDD 161 (196)
T ss_dssp ----HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHH----HHHH
T ss_pred ----ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHH----HHHH
Confidence 1223367999999999865334445556666665322335799999999998653200 01111111 1222
Q ss_pred HHHHc--CCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158 172 ILQLC--DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV 207 (225)
Q Consensus 172 ~~~~~--~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~ 207 (225)
+.+.. .....+ ...||.+ .+++++++.+.+.
T Consensus 162 ~~~~~~~~~~~~~----~e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 162 LADAGLEKLHLSF----YLTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp HHHTTCTTSCEEE----EEECTTS-THHHHHHHHHHHH
T ss_pred HHHhhhhcCCcce----EEEEech-hhHHHHHHHHHHH
Confidence 33311 112222 2456677 8999999888654
No 101
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.76 E-value=1.5e-17 Score=123.85 Aligned_cols=169 Identities=14% Similarity=0.094 Sum_probs=95.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK--DGQVVNVIDTPGLFDSSADSEFVSKEI 93 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (225)
....++|+++|.+|+|||||+|+|++...... ..+..+.......+.+. ....+.+|||||....
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------- 71 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQ--YKATIGADFLTKEVTVDGDKVATMQVWDTAGQERF----------- 71 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTT--C---CCCSCEEEEECCSSSCCEEEEEECCC----------------
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcc--cCCccceEEEEEEEEEcCCcEEEEEEEECCCChHh-----------
Confidence 34679999999999999999999998764322 12222233333444442 1347999999996432
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHH
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 170 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~ 170 (225)
...+..+...+|++|+|+|+.++.+... ..++..+...... ....|+++|+||+|+.........+ ...
T Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~--------~~~ 143 (182)
T 1ky3_A 72 QSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEK--------SAQ 143 (182)
T ss_dssp -----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHH--------HHH
T ss_pred hhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHH--------HHH
Confidence 2333456778999999999974422221 2233344333221 1347999999999975332111111 123
Q ss_pred HHHH-HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 171 EILQ-LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 171 ~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
++.. ..+..++ ..|+.++.+++++++.|.+.+.+.
T Consensus 144 ~~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 144 ELAKSLGDIPLF------LTSAKNAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp HHHHHTTSCCEE------EEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCeEE------EEecCCCCCHHHHHHHHHHHHHHh
Confidence 3333 2223333 345566789999999998776543
No 102
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=6.4e-18 Score=127.91 Aligned_cols=165 Identities=19% Similarity=0.176 Sum_probs=100.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
...++|+|+|.+|+|||||+|+|++...........+.+ ....... ++ ..+.||||||..+.. .. ..
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~---~~~~~~~-~~~~~~~~l~Dt~G~~~~~----~~---~~ 74 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDT---YRQVISC-DKSVCTLQITDTTGSHQFP----AM---QR 74 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEE---EEEEEEE-TTEEEEEEEEECCGGGSCH----HH---HH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccc---eeEEEEE-CCEEEEEEEEeCCChHHhH----HH---HH
Confidence 456999999999999999999999766432211111111 1122223 33 378999999976431 11 11
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
.+...+|++++|+|++++.+... ..++..+.+........|+++|+||+|+.... ...++ ...+.
T Consensus 75 ----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~---------~~~~~ 140 (199)
T 2gf0_A 75 ----LSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-VDTRE---------AQAVA 140 (199)
T ss_dssp ----HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS-SCHHH---------HHHHH
T ss_pred ----HhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccc-cCHHH---------HHHHH
Confidence 22335699999999974322221 23445555543322347999999999986532 11111 23344
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
...+..++ ..|+.++.+++++++.|.+.+.++.
T Consensus 141 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~~~ 173 (199)
T 2gf0_A 141 QEWKCAFM------ETSAKMNYNVKELFQELLTLETRRN 173 (199)
T ss_dssp HHHTCEEE------ECBTTTTBSHHHHHHHHHHHCSSSC
T ss_pred HHhCCeEE------EEecCCCCCHHHHHHHHHHHHhhhh
Confidence 44454333 3455667899999999988876654
No 103
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=1.3e-17 Score=125.20 Aligned_cols=162 Identities=14% Similarity=0.104 Sum_probs=98.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
.+.++|+++|.+|+|||||+|+|++...... . .|.......+.+ ++..+.+|||||..... ..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~----~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~ 76 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-S----PTIGSNVEEIVI-NNTRFLMWDIGGQESLR-----------SS 76 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEE-E----CCSCSSCEEEEE-TTEEEEEEECCC----C-----------GG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcC-c----CCCccceEEEEE-CCEEEEEEECCCCHhHH-----------HH
Confidence 4569999999999999999999997664322 1 122222334555 67899999999986432 11
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
+..+...+|++++|+|+.++.+-.. ...++.+.... ....|+++|+||+|+.... ..++. .+.+.
T Consensus 77 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i---------~~~~~ 143 (187)
T 1zj6_A 77 WNTYYTNTEFVIVVVDSTDRERISV--TREELYKMLAHEDLRKAGLLIFANKQDVKECM--TVAEI---------SQFLK 143 (187)
T ss_dssp GHHHHTTCCEEEEEEETTCTTTHHH--HHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC--CHHHH---------HHHHT
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhchhhCCCeEEEEEECCCCcCCC--CHHHH---------HHHhC
Confidence 2233457899999999975533222 22333333322 1347999999999986542 22222 11221
Q ss_pred H--cC-CcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 175 L--CD-NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 175 ~--~~-~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
. .. ..+.. ...|+.++.+++++++.|.+.+.+..
T Consensus 144 ~~~~~~~~~~~----~~~Sa~~g~gi~~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 144 LTSIKDHQWHI----QACCALTGEGLCQGLEWMMSRLKIRL 180 (187)
T ss_dssp GGGCCSSCEEE----EECBTTTTBTHHHHHHHHHHHHCC--
T ss_pred hhhhcCCCcEE----EEccCCCCcCHHHHHHHHHHHHHHHh
Confidence 1 11 12222 24566778999999999988775553
No 104
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=3.2e-17 Score=123.76 Aligned_cols=167 Identities=14% Similarity=0.033 Sum_probs=101.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
...++|+++|.+|+|||||+|+|++...... ..+++.......+.+ ++ ..+.+|||||..+...
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~---------- 81 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEE---YVPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDR---------- 81 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCS---CCCSSCCCEEEEEES-SSCEEEEEEECCCCSSSSTT----------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCC---CCCcccceeEEEEEE-CCEEEEEEEEECCCCcchhH----------
Confidence 4568999999999999999999997753211 122222222233444 34 4789999999875531
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh----cC-Cc
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR----EC-PK 167 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~----~~-~~ 167 (225)
....+...+|++|+|+|+.++.+.... .++..+.+... ..|+++|.||+|+.... ...+.+.. .. .+
T Consensus 82 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~ 155 (194)
T 2atx_A 82 -LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLRDDP--KTLARLNDMKEKPICVE 155 (194)
T ss_dssp -TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTSTTCH--HHHHHHTTTTCCCCCHH
T ss_pred -HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcccc--cchhhcccccCcccCHH
Confidence 223456788999999999744222221 34445554322 47999999999987542 11111110 00 11
Q ss_pred hHHHHHHHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 168 PLKEILQLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 168 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
...++.+..+. .+ ...|+.++.+++++++.|.+.+.
T Consensus 156 ~~~~~~~~~~~~~~------~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 156 QGQKLAKEIGACCY------VECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp HHHHHHHHHTCSCE------EECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcEE------EEeeCCCCCCHHHHHHHHHHHHh
Confidence 23344444443 22 23456677999999999977653
No 105
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.75 E-value=2.7e-18 Score=132.52 Aligned_cols=166 Identities=16% Similarity=0.061 Sum_probs=102.2
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
.....++|+|+|.+|+|||||+|+++............+.+.......... ....+.+|||||.........
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~------- 82 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GPIKFNVWDTAGQEKFGGLRD------- 82 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETT-EEEEEEEEEECSGGGTSCCCH-------
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEeCCChHHHhHHHH-------
Confidence 345679999999999999999999654332222122334444443333322 334799999999764432211
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
.+...+|++|+|+|++++.+... ..++..+.+.. ...|+++|+||+|+.... ... + ...+.
T Consensus 83 ----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~~----~-----~~~~~ 144 (221)
T 3gj0_A 83 ----GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKDRK--VKA----K-----SIVFH 144 (221)
T ss_dssp ----HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS---TTCCEEEEEECTTSSSCS--SCG----G-----GCCHH
T ss_pred ----HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCcccccc--ccH----H-----HHHHH
Confidence 23447899999999985432222 23334444432 237999999999986543 111 1 22233
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
...+..++ ..|+.++.+++++++.|.+.+....
T Consensus 145 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 145 RKKNLQYY------DISAKSNYNFEKPFLWLARKLIGDP 177 (221)
T ss_dssp HHHTCEEE------ECBGGGTBTTTHHHHHHHHHHHTCT
T ss_pred HHcCCEEE------EEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 34454433 3466777899999999998876654
No 106
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.75 E-value=8.7e-18 Score=143.84 Aligned_cols=168 Identities=20% Similarity=0.258 Sum_probs=111.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAF-----KSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSK 91 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~-----~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~ 91 (225)
.+.++|+++|+.++|||||+|+|++.... .......+.|.......+.+ ++..+.||||||+.
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh~----------- 84 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHA----------- 84 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHH-----------
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCChH-----------
Confidence 55789999999999999999999987611 01122445666666666777 77899999999963
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158 92 EIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 171 (225)
Q Consensus 92 ~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (225)
.+...+......+|++|+|+|+++.....+.+.+..+... ..|.++|+||+|.... ...+...++ +++
T Consensus 85 ~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~-----~ip~IvviNK~Dl~~~--~~~~~~~~~-----l~~ 152 (482)
T 1wb1_A 85 DLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF-----NIPIIVVITKSDNAGT--EEIKRTEMI-----MKS 152 (482)
T ss_dssp HHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCBCEEEECTTSSCH--HHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHc-----CCCEEEEEECCCcccc--hhHHHHHHH-----HHH
Confidence 2333344456678999999999877777777777666542 2677999999998742 234444444 566
Q ss_pred HHHHc-CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 172 ILQLC-DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 172 ~~~~~-~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
++... +... ....+.|+.++.++++|++.|.+.+...
T Consensus 153 ~l~~~~~~~~---~~ii~vSA~~g~gI~~L~~~L~~~i~~~ 190 (482)
T 1wb1_A 153 ILQSTHNLKN---SSIIPISAKTGFGVDELKNLIITTLNNA 190 (482)
T ss_dssp HHHHSSSGGG---CCEEECCTTTCTTHHHHHHHHHHHHHHS
T ss_pred HHhhhccccc---ceEEEEECcCCCCHHHHHHHHHHhhcCc
Confidence 66655 3210 1123456677799999999999987643
No 107
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.75 E-value=5.9e-19 Score=149.98 Aligned_cols=164 Identities=17% Similarity=0.201 Sum_probs=101.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
..++|+++|.+|+|||||+|+|++...... ...+++|.+.....+.+ ++..+.||||||+.++....+ ..-....
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v-~~~~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~~~~ve---~~gi~~~ 297 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIV-TDLPGTTRDVVESQLVV-GGIPVQVLDTAGIRETSDQVE---KIGVERS 297 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCC-SCCTTCCHHHHHHEEEE-TTEEEEECC----------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccc-cCCCCeeEEEEEEEEEE-CCEEEEEEECCccccchhHHH---HHHHHHH
Confidence 357899999999999999999998764333 23456666665555666 788999999999875421111 1111223
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
......+|++++|+|+.++.+..+..+++.+.. .|+++|+||+|+.... ... ...+ +. .+
T Consensus 298 ~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~~~--~~~-~~~~-----~~-----~~ 357 (462)
T 3geh_A 298 RQAANTADLVLLTIDAATGWTTGDQEIYEQVKH-------RPLILVMNKIDLVEKQ--LIT-SLEY-----PE-----NI 357 (462)
T ss_dssp -CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT-------SCEEEEEECTTSSCGG--GST-TCCC-----CT-----TC
T ss_pred hhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC-------CcEEEEEECCCCCcch--hhH-HHHH-----hc-----cC
Confidence 356678999999999987777777555554432 6999999999986543 111 0000 00 01
Q ss_pred CcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
.+ ....|++++.++++|++.|.+.+....
T Consensus 358 ~~------~i~iSAktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 358 TQ------IVHTAAAQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp CC------EEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred Cc------EEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 11 234566677899999999988876643
No 108
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.7e-17 Score=127.16 Aligned_cols=164 Identities=18% Similarity=0.116 Sum_probs=99.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
...++|+|+|.+|+|||||+|+|++....... .+..+.......+.+ ++ ..+.||||||...+..
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~---------- 77 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDS--KSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRA---------- 77 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTC----------
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCcccceeEEEEEEE-CCEEEEEEEEECCCccchhh----------
Confidence 45689999999999999999999987643221 222233333334455 44 4899999999765432
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
.+..+...+|++|+|+|+.++.+... ..++..+..... ...|+++|+||+|+........++ ..++.
T Consensus 78 -~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~~~---------~~~~~ 145 (223)
T 3cpj_B 78 -ITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD--DNVAVGLIGNKSDLAHLRAVPTEE---------SKTFA 145 (223)
T ss_dssp -CCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGGCCSCHHH---------HHHHH
T ss_pred -hHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccccCHHH---------HHHHH
Confidence 12345678899999999974432222 223334433321 247999999999986532111111 33444
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
...+..++ ..|+.++.+++++++.|.+.+.+.
T Consensus 146 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 146 QENQLLFT------ETSALNSENVDKAFEELINTIYQK 177 (223)
T ss_dssp HHTTCEEE------ECCCC-CCCHHHHHHHHHHHHTTC
T ss_pred HHcCCEEE------EEeCCCCCCHHHHHHHHHHHHHHH
Confidence 44454333 235566789999999998877654
No 109
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.75 E-value=3.3e-17 Score=122.61 Aligned_cols=162 Identities=15% Similarity=0.102 Sum_probs=100.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
...++|+++|.+|+|||||+|+|.+...... ..|.......+.+ ++..+.+|||||.... ...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~-----~~t~g~~~~~~~~-~~~~l~i~Dt~G~~~~-----------~~~ 76 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHI-----TPTQGFNIKSVQS-QGFKLNVWDIGGQRKI-----------RPY 76 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECSSCGGG-----------HHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcc-----cCcCCeEEEEEEE-CCEEEEEEECCCCHHH-----------HHH
Confidence 5679999999999999999999998753211 1222233445566 6789999999996532 222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
+..+...+|++++|+|+.++.+... ...++.+.+.. ....|+++|.||+|+.... ..++..+. .. +.
T Consensus 77 ~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~-~~------~~ 145 (181)
T 1fzq_A 77 WRSYFENTDILIYVIDSADRKRFEE--TGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEG-LN------LH 145 (181)
T ss_dssp HHHHHTTCSEEEEEEETTCGGGHHH--HHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHH-TT------GG
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHH--HHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHH-hC------ch
Confidence 3344567899999999974432222 22333433322 1347999999999987553 22222111 00 00
Q ss_pred HcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 175 LCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 175 ~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
.... .+.. ...||.++.+++++++.|.+.+.+
T Consensus 146 ~~~~~~~~~----~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 146 TIRDRVWQI----QSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp GCCSSCEEE----EECCTTTCTTHHHHHHHHHHTC--
T ss_pred hccCCceEE----EEccCCCCCCHHHHHHHHHHHHHh
Confidence 1111 1222 345677789999999999876644
No 110
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.75 E-value=5e-17 Score=124.94 Aligned_cols=173 Identities=13% Similarity=0.039 Sum_probs=101.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
....++|+|+|.+|+|||||+|+|++...... ...++.......+.+. ....+.||||||.....
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------- 89 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPET---YVPTVFENYTACLETEEQRVELSLWDTSGSPYYD----------- 89 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSS---CCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGT-----------
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCC---cCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHH-----------
Confidence 45679999999999999999999997764222 1111112122223331 23478999999975432
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhh----hcCCch
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLG----RECPKP 168 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~----~~~~~~ 168 (225)
.....++..+|++|+|+|++++.+... ..++..+.... ...|+++|.||+|+..... ....... ......
T Consensus 90 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~ 165 (214)
T 3q3j_B 90 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC---PSTRVLLIGCKTDLRTDLS-TLMELSHQKQAPISYEQ 165 (214)
T ss_dssp TTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC---TTSEEEEEEECGGGGGCHH-HHHHHHHTTCCCCCHHH
T ss_pred HHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccchh-hhhhhcccccCccCHHH
Confidence 223356778999999999985433222 23445555543 2379999999999865310 0000000 001112
Q ss_pred HHHHHHHcCC-cEEEeeCCCccccccHHH-HHHHHHHHHHHHHHcC
Q 036158 169 LKEILQLCDN-RCVLFDNKTKDTAKRTEQ-VGKLLSLVNSVIVQNG 212 (225)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-v~~l~~~i~~~~~~~~ 212 (225)
..++....+. .++ ..||.++.+ ++++++.+.+.+.+..
T Consensus 166 ~~~~~~~~~~~~~~------e~SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 166 GCAIAKQLGAEIYL------EGSAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp HHHHHHHHTCSEEE------ECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHcCCCEEE------EeccCCCcccHHHHHHHHHHHHhccC
Confidence 3445555554 332 345566788 9999999988876554
No 111
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.75 E-value=3.9e-17 Score=124.36 Aligned_cols=166 Identities=12% Similarity=0.064 Sum_probs=101.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI 93 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~ 93 (225)
....++|+|+|.+|+|||||+|+|++...... ..+..+.......+.+ ++ ..+.||||||......
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~--------- 72 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQ--YKATIGADFLTKEVMV-DDRLVTMQIWDTAGQERFQS--------- 72 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSS--CCCCCSEEEEEEEEES-SSCEEEEEEEEECSSGGGSC---------
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCC--CCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHH---------
Confidence 35679999999999999999999998764322 2233334444444444 33 4799999999754321
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHH
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 170 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~ 170 (225)
.+......+|++|+|+|+.++.+... ..++..+...... ....|+++|+||+|+.... ...++ ..
T Consensus 73 --~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~---------~~ 140 (207)
T 1vg8_A 73 --LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-VATKR---------AQ 140 (207)
T ss_dssp --SCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-SCHHH---------HH
T ss_pred --hHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccc-cCHHH---------HH
Confidence 12235567899999999974422221 2233334333321 1247999999999986322 11111 23
Q ss_pred HHHH-HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 171 EILQ-LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 171 ~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
++.. ..+..++ ..|+.++.+++++++.|.+.+.+.
T Consensus 141 ~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~~~ 176 (207)
T 1vg8_A 141 AWCYSKNNIPYF------ETSAKEAINVEQAFQTIARNALKQ 176 (207)
T ss_dssp HHHHHTTSCCEE------ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCceEE------EEeCCCCCCHHHHHHHHHHHHHHh
Confidence 3333 2222322 345667789999999998777553
No 112
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.75 E-value=1.6e-17 Score=140.77 Aligned_cols=168 Identities=16% Similarity=0.142 Sum_probs=106.6
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhCCcccccc-----------------------------CCCCCceeEEEEEEEE
Q 036158 14 SPSNGERNLVLVGRTGNGKSATANSILGKRAFKSK-----------------------------AGSSGVTKTCEMQRTM 64 (225)
Q Consensus 14 ~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~ 64 (225)
.+..+.++|+++|++|+|||||+|+|++....... ....+.|.+.....+.
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 34567899999999999999999999765321110 1124678888777788
Q ss_pred eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCC-------HHHHHHHHHHHHHhccccc
Q 036158 65 LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFS-------EEEGAAIHILESLFGKKIS 137 (225)
Q Consensus 65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~-------~~~~~~~~~l~~~~~~~~~ 137 (225)
+ ++..+.||||||+.++ ...+......+|++|+|+|++++.. ..+.+.+..+... + .
T Consensus 92 ~-~~~~~~iiDTPGh~~f-----------~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~-~---v 155 (439)
T 3j2k_7 92 T-EKKHFTILDAPGHKSF-----------VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-G---V 155 (439)
T ss_pred c-CCeEEEEEECCChHHH-----------HHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc-C---C
Confidence 7 7789999999997543 2223334557899999999986543 3445555544432 1 1
Q ss_pred ccEEEEEecCCCCCCC--cccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHH
Q 036158 138 DYMIVVFTGGDELEDN--DETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLS 202 (225)
Q Consensus 138 ~~~~vv~~k~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 202 (225)
+++++++||+|+.... ....++...+ +.++++.++......-...+.||.++.++.++.+
T Consensus 156 ~~iIvviNK~Dl~~~~~~~~~~~~i~~~-----~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 156 KHLIVLINKMDDPTVNWSNERYEECKEK-----LVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CeEEEEeecCCCcccchHHHHHHHHHHH-----HHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 3489999999985432 1223333333 5666666554210001123456677788887443
No 113
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.75 E-value=5.8e-19 Score=134.13 Aligned_cols=164 Identities=18% Similarity=0.130 Sum_probs=96.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
...++|+|+|.+|+|||||+|+|++....... .+..+.......+.+ ++ ..+.||||||.......
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~--------- 98 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTI--------- 98 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHH--HHHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCCC---------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCc--CCcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHHH---------
Confidence 44689999999999999999999986642221 223334444455555 44 47999999997654321
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc-cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK-KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
+..+...+|++|+|+|+.++.+.. ....++..+... ....|+++|+||+|+....... .....++.
T Consensus 99 --~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~---------~~~~~~~~ 165 (199)
T 3l0i_B 99 --TSSYYRGAHGIIVVYDVTDQESFN--NVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVD---------YTTAKEFA 165 (199)
T ss_dssp --SCC--CCCSEEEECC-CCCSHHHH--HHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCC---------SCC-CHHH
T ss_pred --HHHHhhcCCEEEEEEECCCHHHHH--HHHHHHHHHHHhccCCCCEEEEEECccCCccccCC---------HHHHHHHH
Confidence 223566889999999997543222 222333333221 1247999999999986543111 11123344
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
...+.. ....|+.++.+++++++.|.+.+.+.
T Consensus 166 ~~~~~~------~~~vSA~~g~gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 166 DSLGIP------FLETSAKNATNVEQSFMTMAAEIKKR 197 (199)
T ss_dssp HTTTCC------BCCCCC---HHHHHHHHHHTTTTTTT
T ss_pred HHcCCe------EEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 444432 34567788899999999997765543
No 114
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.75 E-value=4.7e-17 Score=123.73 Aligned_cols=167 Identities=16% Similarity=0.138 Sum_probs=101.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
...++|+++|.+|+|||||+|++.+....... .+..+.... ..+.+ ++ ..+.||||||..+..
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~----------- 87 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYI-ADIEV-DGKQVELALWDTAGQEDYD----------- 87 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSC--CCSSCCCCE-EEEEE-TTEEEEEEEECCCCSGGGT-----------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCccc--CCcccceEE-EEEEE-CCEEEEEEEEECCCchhHH-----------
Confidence 45689999999999999999999977643221 122222111 22344 44 378999999965432
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh----c-CCc
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR----E-CPK 167 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~----~-~~~ 167 (225)
.....+...+|++|+|+|++++.+... ..++..+.+... ..|+++|+||+|+.... ...+...+ . ..+
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~ 162 (201)
T 2gco_A 88 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRQDE--HTRRELAKMKQEPVRSE 162 (201)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGTTCH--HHHHHHHTTTCCCCCHH
T ss_pred HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEecHHhhcCc--cchhhhcccccCcCCHH
Confidence 222345678899999999974322222 234444544322 37999999999987652 22211111 0 011
Q ss_pred hHHHHHHHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 168 PLKEILQLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 168 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
...++....+. .++ ..|+.++.+++++++.|.+.+.
T Consensus 163 ~~~~~~~~~~~~~~~------~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 163 EGRDMANRISAFGYL------ECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp HHHHHHHHTTCSEEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcEEE------EeeCCCCCCHHHHHHHHHHHHh
Confidence 23444444443 222 3456677999999999987653
No 115
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.75 E-value=3.2e-17 Score=130.47 Aligned_cols=163 Identities=15% Similarity=0.188 Sum_probs=102.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG 98 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (225)
.++|+++|.+|+|||||+|+|++.... . ...+++|.......+.. +..+.+|||||......... .+.+.....
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~-v-~~~pg~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~~--~e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR-V-GNWPGVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYSP--EAKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC-C-CSSSCCCCSCEEEECTT--CTTEEEEECCCCSCSSCSSH--HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-c-cCCCCCcEEEEEEEEec--CCeEEEEECCCcCccCCCCh--HHHHHHHHH
Confidence 478999999999999999999997643 2 23456666554444432 66899999999987643221 122222211
Q ss_pred hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158 99 MTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 178 (225)
Q Consensus 99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (225)
. ...+|++++|+|+.. . . ..+.+..++.. ...|+++|+||+|..... . .......+.+..+.
T Consensus 77 ~-~~~~d~vi~V~D~t~-~-e---~~~~~~~~l~~--~~~p~ilv~NK~Dl~~~~--~--------~~~~~~~l~~~lg~ 138 (272)
T 3b1v_A 77 L-SQRADSILNVVDATN-L-E---RNLYLTTQLIE--TGIPVTIALNMIDVLDGQ--G--------KKINVDKLSYHLGV 138 (272)
T ss_dssp H-TTCCSEEEEEEEGGG-H-H---HHHHHHHHHHH--TCSCEEEEEECHHHHHHT--T--------CCCCHHHHHHHHTS
T ss_pred h-cCCCCEEEEEecCCc-h-H---hHHHHHHHHHh--cCCCEEEEEEChhhCCcC--C--------cHHHHHHHHHHcCC
Confidence 1 146899999999973 2 1 12223333221 247999999999965322 1 11123444444454
Q ss_pred cEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 179 RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
+++ +.||.++.++++|++.|.+.+...
T Consensus 139 ~vi------~~SA~~g~gi~el~~~i~~~~~~~ 165 (272)
T 3b1v_A 139 PVV------ATSALKQTGVDQVVKKAAHTTTST 165 (272)
T ss_dssp CEE------ECBTTTTBSHHHHHHHHHHSCTTT
T ss_pred CEE------EEEccCCCCHHHHHHHHHHHHhhc
Confidence 433 345667799999999998776543
No 116
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.74 E-value=3.7e-17 Score=122.19 Aligned_cols=170 Identities=15% Similarity=0.063 Sum_probs=102.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
...++|+++|.+|+|||||+|++++...... ...++.......+.+ ++. .+.+|||||.....
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~----------- 67 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGE---YIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYD----------- 67 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSS---CCCCSCCEEEEEEEE-TTEEEEEEEECCCCSGGGT-----------
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCC---cCCcccceeEEEEEE-CCEEEEEEEEECCCCHhHH-----------
Confidence 3568999999999999999999997654222 112222222223344 443 57799999986432
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhh---hc-CCch
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLG---RE-CPKP 168 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~---~~-~~~~ 168 (225)
.....+...+|++++|+|++++.+..+. .++..+.+..+ ..|+++|+||+|+.... ...+.... +. ....
T Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~ 143 (186)
T 1mh1_A 68 RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQ 143 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHTCH-HHHHHHHHTTCCCCCHHH
T ss_pred HHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEcccccccc-hhhhhhcccccccCCHHH
Confidence 2223456788999999999754332222 24445554332 47999999999986542 11111111 00 0112
Q ss_pred HHHHHHHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 169 LKEILQLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
..++....+. +++ ..|+.++.+++++++.|.+.+.+.
T Consensus 144 ~~~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 144 GLAMAKEIGAVKYL------ECSALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp HHHHHHHTTCSEEE------ECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred HHHHHHhcCCcEEE------EecCCCccCHHHHHHHHHHHHhcc
Confidence 3344444443 322 345667799999999998877543
No 117
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=2.7e-17 Score=124.51 Aligned_cols=164 Identities=18% Similarity=0.169 Sum_probs=97.6
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI 93 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~ 93 (225)
....++|+|+|.+|+|||||+|+|++...... . ..++.......+.+ ++ ..+.+|||||..+ ....
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-~--~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----~~~~--- 92 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWE-Y--DPTLESTYRHQATI-DDEVVSMEILDTAGQED-----TIQR--- 92 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSC-C--CTTCCEEEEEEEEE-TTEEEEEEEEECCCCCC-----CHHH---
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcc-c--CCCCCceEEEEEEE-CCEEEEEEEEECCCCCc-----ccch---
Confidence 35679999999999999999999998764222 1 11111122223344 33 4699999999875 1111
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 172 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~ 172 (225)
.. +...+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+........++ ..++
T Consensus 93 ~~----~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~---------~~~~ 158 (196)
T 2atv_A 93 EG----HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHSRQVSTEE---------GEKL 158 (196)
T ss_dssp HH----HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGGCCSCHHH---------HHHH
T ss_pred hh----hhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECcccccccccCHHH---------HHHH
Confidence 11 2234599999999974322221 223444444322 1247999999999986532111111 2334
Q ss_pred HHHcCCcEEEeeCCCccccccHH-HHHHHHHHHHHHHHHc
Q 036158 173 LQLCDNRCVLFDNKTKDTAKRTE-QVGKLLSLVNSVIVQN 211 (225)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~~i~~~~~~~ 211 (225)
.+..+..++ ..|+..+. +++++++.|.+.+.+.
T Consensus 159 ~~~~~~~~~------~~Sa~~g~~gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 159 ATELACAFY------ECSACTGEGNITEIFYELCREVRRR 192 (196)
T ss_dssp HHHHTSEEE------ECCTTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCCeEE------EECCCcCCcCHHHHHHHHHHHHHhh
Confidence 444444333 23455667 9999999998776554
No 118
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.74 E-value=9.4e-17 Score=121.31 Aligned_cols=161 Identities=11% Similarity=0.076 Sum_probs=97.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
.+.++|+|+|.+|+|||||+|++++...... ..|.......+.+ .+..+.+|||||.......
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~----------- 89 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNICFTVWDVGGQDKIRPL----------- 89 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECC-----CTT-----------
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcccc-----CCcCceeEEEEEE-CCEEEEEEECCCCHhHHHH-----------
Confidence 5679999999999999999999987664221 2233344445566 7789999999998654221
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
+..+...+|++++|+|+.++.+-. ....++....... ...|+++|+||+|+.... ..+++... .. ..
T Consensus 90 ~~~~~~~~d~iilv~D~~~~~s~~--~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~-~~------~~ 158 (192)
T 2b6h_A 90 WRHYFQNTQGLIFVVDSNDRERVQ--ESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDK-LG------LQ 158 (192)
T ss_dssp HHHHHHTCCEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHH-TT------GG
T ss_pred HHHHhccCCEEEEEEECCCHHHHH--HHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHH-hC------cc
Confidence 112334679999999997543222 2334444433221 247999999999986542 22332222 00 00
Q ss_pred HcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 175 LCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 175 ~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
.... .+.. ...|+.++.+++++++.|.+.+.
T Consensus 159 ~~~~~~~~~----~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 159 HLRSRTWYV----QATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp GCSSCCEEE----EECBTTTTBTHHHHHHHHHHHTT
T ss_pred cccCCceEE----EECcCCCcCCHHHHHHHHHHHHh
Confidence 1111 1222 34566778999999999977654
No 119
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=8.2e-17 Score=122.97 Aligned_cols=169 Identities=17% Similarity=0.121 Sum_probs=101.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
...++|+++|.+|+|||||+|+|++...... ...++.......+.+ ++ ..+.||||||..+...
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~---------- 88 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEV---YVPTVFENYVADIEV-DGKQVELALWDTAGQEDYDR---------- 88 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC----------CCEEEEEEEE-TTEEEEEEEEECTTCTTCTT----------
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCc---CCCcccceEEEEEEE-CCEEEEEEEEECCCcHHHHH----------
Confidence 4468999999999999999999998764322 111121222222444 44 3789999999875531
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhc----C-Cc
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE----C-PK 167 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~----~-~~ 167 (225)
....+...+|++|+|+|++++.+... ..++..+.+... ..|+++|+||+|+.... ...+.+.+. . ..
T Consensus 89 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~ 162 (207)
T 2fv8_A 89 -LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP---NVPIILVANKKDLRSDE--HVRTELARMKQEPVRTD 162 (207)
T ss_dssp -TGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGGGCH--HHHHHHHHTTCCCCCHH
T ss_pred -HHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhhhccc--cchhhhhhcccCCCCHH
Confidence 22245678899999999974322222 234445544322 37999999999987542 222211110 0 01
Q ss_pred hHHHHHHHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 168 PLKEILQLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 168 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
...++....+. .+ ...|+.++.++++|++.|.+.+.+.
T Consensus 163 ~~~~~~~~~~~~~~------~~~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 163 DGRAMAVRIQAYDY------LECSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp HHHHHHHHTTCSEE------EECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcCCCEE------EEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 12333334343 22 2346667799999999998877654
No 120
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.74 E-value=5.4e-18 Score=144.69 Aligned_cols=160 Identities=21% Similarity=0.282 Sum_probs=107.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCC-CCCCCcHHH-HHHHHHH
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF-DSSADSEFV-SKEIVKC 96 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~-~~~~~~~~~-~~~~~~~ 96 (225)
.++|+++|.+|+|||||+|+|++.....+ ...+++|.+.....+.+ ++..+.||||||+. ++....+.. ......
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~v-s~~~gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~- 319 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIV-TDIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTLQ- 319 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCC-CCSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHHH-
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCcc-CCCCCeeeeeEEEEEec-CCeEEEEEECCCccccchhhHHHHHHHHHHH-
Confidence 37999999999999999999998764323 33566777776667777 78899999999997 543221111 111122
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
+...+|++|+|+|+.++.+..+.++++.+ . .+|+++|+||+|+.... ..++ +.+... .
T Consensus 320 ---~~~~aD~vl~VvD~s~~~s~~~~~il~~l----~---~~piivV~NK~DL~~~~--~~~~---------~~~~~~-~ 377 (482)
T 1xzp_A 320 ---EIEKADIVLFVLDASSPLDEEDRKILERI----K---NKRYLVVINKVDVVEKI--NEEE---------IKNKLG-T 377 (482)
T ss_dssp ---HHHHCSEEEEEEETTSCCCHHHHHHHHHH----T---TSSEEEEEEECSSCCCC--CHHH---------HHHHHT-C
T ss_pred ---HhhcccEEEEEecCCCCCCHHHHHHHHHh----c---CCCEEEEEECccccccc--CHHH---------HHHHhc-C
Confidence 23356999999999867676665554333 2 37999999999986431 2211 222221 1
Q ss_pred CCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
+.++ ...|+.++.++++|++.|.+.+.
T Consensus 378 ~~~~------i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 378 DRHM------VKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp STTE------EEEEGGGTCCHHHHHHHHHHHTH
T ss_pred CCcE------EEEECCCCCCHHHHHHHHHHHHh
Confidence 1222 34567778999999999988654
No 121
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.74 E-value=1e-16 Score=132.56 Aligned_cols=174 Identities=14% Similarity=0.121 Sum_probs=103.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (225)
+.|+++|.+|+|||||+|+|++.... . ....++|.+.....+.+ ++..+.++||||+... . .....+.+...+.
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~-~-~~~~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~~-l-p~~lve~f~~tl~- 253 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQK-V-DTKLFTTMSPKRYAIPI-NNRKIMLVDTVGFIRG-I-PPQIVDAFFVTLS- 253 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEE-TTEEEEEEECCCBCSS-C-CGGGHHHHHHHHH-
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCcc-c-cCCcccccCCEEEEEEE-CCEEEEEEeCCCchhc-C-CHHHHHHHHHHHH-
Confidence 45999999999999999999988742 2 23445666666666777 6789999999998532 1 1223333433332
Q ss_pred cCCCccEEEEEEeCCCCC--CHHHHH-HHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158 100 TKDGIHAVLVVFSVRNRF--SEEEGA-AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~--~~~~~~-~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
....+|++++|+|+.++. ...... ..+.+... +. ...|+++|.||+|..... ....... +..+....
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l-~~-~~~p~ilV~NK~Dl~~~~---~~~~~~~-----~~~l~~~l 323 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREI-GV-SGKPILVTLNKIDKINGD---LYKKLDL-----VEKLSKEL 323 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH-TC-CSCCEEEEEECGGGCCSC---HHHHHHH-----HHHHHHHH
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh-Cc-CCCCEEEEEECCCCCCch---HHHHHHH-----HHHHHHHh
Confidence 455789999999987442 111111 22333332 21 237899999999987542 2211111 22223333
Q ss_pred -CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158 177 -DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG 213 (225)
Q Consensus 177 -~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~ 213 (225)
..... ..+.|+.++.++++|++.|.+++..+..
T Consensus 324 ~~~~~~----~~~~SA~~g~gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 324 YSPIFD----VIPISALKRTNLELLRDKIYQLATQLSL 357 (364)
T ss_dssp CSCEEE----EEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred cCCCCc----EEEEECCCCcCHHHHHHHHHHHhcccCC
Confidence 21111 1456677789999999999999888764
No 122
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.74 E-value=1.1e-17 Score=135.76 Aligned_cols=178 Identities=12% Similarity=0.119 Sum_probs=101.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCC----CCC--ceeEE--------------------------------
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAG----SSG--VTKTC-------------------------------- 58 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~----~~~--~t~~~-------------------------------- 58 (225)
...++|+|+|.+|+|||||+|+|+|....+.... .+. .++..
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 4568999999999999999999999876333211 010 00000
Q ss_pred -------------------EEEEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHHHHHHhhcCCCccEEEEEEeC-CCC
Q 036158 59 -------------------EMQRTMLKDGQVVNVIDTPGLFDSSA--DSEFVSKEIVKCIGMTKDGIHAVLVVFSV-RNR 116 (225)
Q Consensus 59 -------------------~~~~~~~~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ii~v~~~-~~~ 116 (225)
....+..+.+..+.||||||+.+... ........+...+..+...+|++++|++. +..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 00011222456899999999975321 11122334445555566678999999986 434
Q ss_pred CCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCcccccc--
Q 036158 117 FSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKR-- 193 (225)
Q Consensus 117 ~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 193 (225)
+...+ ..+++.+.. ...|+++|+||+|....... ..+.... .+..++..+..+.+ .++.+
T Consensus 182 ~~~~~~~~i~~~~~~-----~~~~~i~v~NK~Dl~~~~~~-~~~~~~~--------~~~~~~~~~~~v~~---~sa~~~~ 244 (315)
T 1jwy_B 182 LANSDALQLAKEVDP-----EGKRTIGVITKLDLMDKGTD-AMEVLTG--------RVIPLTLGFIGVIN---RSQEDII 244 (315)
T ss_dssp STTCSHHHHHHHHCS-----SCSSEEEEEECTTSSCSSCC-CHHHHTT--------SSSCCTTCEEECCC---CCHHHHS
T ss_pred hhhhHHHHHHHHhCC-----CCCcEEEEEcCcccCCcchH-HHHHHhC--------CCccCCCCeEEEec---CChhhhc
Confidence 44333 244444432 24799999999998765411 1111111 00111233443333 34444
Q ss_pred -HHHHHHHHHHHHHHHHHc
Q 036158 194 -TEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 194 -~~~v~~l~~~i~~~~~~~ 211 (225)
+.++.++++.+.+++++.
T Consensus 245 ~~~gv~~l~~~~~~~~~~~ 263 (315)
T 1jwy_B 245 AKKSIRESLKSEILYFKNH 263 (315)
T ss_dssp SSCCHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHHhCC
Confidence 678999999999888764
No 123
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.74 E-value=5.7e-17 Score=121.50 Aligned_cols=169 Identities=14% Similarity=0.090 Sum_probs=99.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
...++|+++|.+|+|||||+|+|.+...... . .+... ......+.+. ....+.+|||||...+. .
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-~-~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~ 70 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPEN-Y-VPTVF-ENYTASFEIDTQRIELSLWDTSGSPYYD-----------N 70 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSS-C-CCCSE-EEEEEEEECSSCEEEEEEEEECCSGGGT-----------T
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCC-C-CCccc-eeEEEEEEECCEEEEEEEEECCCChhhh-----------h
Confidence 4568999999999999999999997654211 1 11111 1112233331 22478999999975432 1
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh---cC-CchH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR---EC-PKPL 169 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~---~~-~~~~ 169 (225)
....+...+|++|+|+|+.++.+... ..++..+.+... ..|+++|.||+|+.... ....++... .. .+..
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~ 146 (184)
T 1m7b_A 71 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQG 146 (184)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHH
T ss_pred hHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEEcchhhcch-hhHhhhhhcccCCCCHHHH
Confidence 22345678899999999975432222 223344444322 37999999999986432 111111110 00 1113
Q ss_pred HHHHHHcCC-cEEEeeCCCccccc-cHHHHHHHHHHHHHHHH
Q 036158 170 KEILQLCDN-RCVLFDNKTKDTAK-RTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 170 ~~~~~~~~~-~~~~~~~~~~~~~~-~~~~v~~l~~~i~~~~~ 209 (225)
.++.+..+. .++ ..|+. .+.+++++++.+.+.+-
T Consensus 147 ~~~~~~~~~~~~~------e~Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 147 ANMAKQIGAATYI------ECSALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp HHHHHHHTCSEEE------ECBTTTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEE------EeeecCCCcCHHHHHHHHHHHHh
Confidence 444444442 222 34555 57899999999987654
No 124
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.73 E-value=5.9e-17 Score=122.80 Aligned_cols=170 Identities=20% Similarity=0.166 Sum_probs=99.1
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHH
Q 036158 15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKE 92 (225)
Q Consensus 15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~ 92 (225)
+....++|+|+|.+|+|||||+|+|.+....... .+.++.......+.+ ++. .+.+|||||..... . .
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~---~----~ 88 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAH--EPENPEDTYERRIMV-DKEEVTLVVYDIWEQGDAG---G----W 88 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGG--TTTSCTTEEEEEEEE-TTEEEEEEEECCCCCSGGG---H----H
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccC--CCCcccceEEEEEEE-CCEEEEEEEEecCCCccch---h----h
Confidence 3466799999999999999999999865432111 122233333333444 443 67889999976321 1 1
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158 93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 171 (225)
Q Consensus 93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (225)
+.. .++..+|++|+|+|++++.+-.. ..++..+..... ....|+++|.||+|+........++ ..+
T Consensus 89 ~~~---~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~---------~~~ 155 (195)
T 3cbq_A 89 LRD---HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREVSLEE---------GRH 155 (195)
T ss_dssp HHH---HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTTTCCSCHHH---------HHH
T ss_pred hHH---HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhccccCCcCHHH---------HHH
Confidence 111 12335699999999974322111 223333333211 1247999999999986543212222 233
Q ss_pred HHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158 172 ILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG 213 (225)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~ 213 (225)
+.+..+..++ ..|+..+.+++++++.|.+.+.+...
T Consensus 156 ~a~~~~~~~~------e~Sa~~~~~v~~lf~~l~~~i~~~~~ 191 (195)
T 3cbq_A 156 LAGTLSCKHI------ETSAALHHNTRELFEGAVRQIRLRRG 191 (195)
T ss_dssp HHHHTTCEEE------EEBTTTTBSHHHHHHHHHHHHHTTC-
T ss_pred HHHHhCCEEE------EEcCCCCCCHHHHHHHHHHHHHHhcC
Confidence 4444444332 34556678999999999888766543
No 125
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.73 E-value=6.4e-17 Score=122.01 Aligned_cols=163 Identities=10% Similarity=0.032 Sum_probs=97.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
.+..+|+++|.+|+|||||+|++.+...... ..|.......+.+ ++..+.+|||||..... ..
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~ 83 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATL-----QPTWHPTSEELAI-GNIKFTTFDLGGHIQAR-----------RL 83 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCC-----CCCCSCEEEEEEE-TTEEEEEEECCCSGGGT-----------TS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcc-----ccCCCCCeEEEEE-CCEEEEEEECCCCHHHH-----------HH
Confidence 5568999999999999999999997664221 2233334455666 67899999999986432 12
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchH---HH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPL---KE 171 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~---~~ 171 (225)
+..+...+|++++|+|+.++.+-.. ...++.+.... ....|+++|.||+|+.... ..++..+. ..... +.
T Consensus 84 ~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~-~~~~~~~~~~ 158 (190)
T 1m2o_B 84 WKDYFPEVNGIVFLVDAADPERFDE--ARVELDALFNIAELKDVPFVILGNKIDAPNAV--SEAELRSA-LGLLNTTGSQ 158 (190)
T ss_dssp GGGGCTTCCEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHH-TTCSSCCC--
T ss_pred HHHHHhcCCEEEEEEECCChHHHHH--HHHHHHHHHcchhhcCCCEEEEEECCCCcCCC--CHHHHHHH-hCCccccccc
Confidence 2345678899999999975433222 22333333321 1347999999999986532 22222111 00000 00
Q ss_pred HHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158 172 ILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNS 206 (225)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~ 206 (225)
.+ .....+ ...+.|+.++.+++++++.|.+
T Consensus 159 ~~--~~~~~~---~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 159 RI--EGQRPV---EVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp -C--CSSCCE---EEEECBTTTTBSHHHHHHHHHT
T ss_pred cc--cccceE---EEEEeECCcCCCHHHHHHHHHh
Confidence 00 011111 1234567778999999998854
No 126
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.73 E-value=1.4e-16 Score=119.78 Aligned_cols=164 Identities=21% Similarity=0.123 Sum_probs=96.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI 93 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~ 93 (225)
....++|+|+|.+|+|||||+|++++...... ...++.........+ ++ ..+.||||||...+...
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~-------- 85 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISE---YDPNLEDTYSSEETV-DHQPVHLRVMDTADLDTPRNC-------- 85 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSC---CCTTCCEEEEEEEEE-TTEEEEEEEEECCC---CCCT--------
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcc---cCCCccceeeEEEEE-CCEEEEEEEEECCCCCcchhH--------
Confidence 45679999999999999999999997763211 122222222223333 33 36889999998754321
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGK-KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 171 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (225)
. .++..+|++++|+|++++.+-.. ..++..+...... ....|+++|.||+|+........++ ..+
T Consensus 86 ~----~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~---------~~~ 152 (187)
T 3c5c_A 86 E----RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAE---------GVA 152 (187)
T ss_dssp H----HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHH---------HHH
T ss_pred H----HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHH---------HHH
Confidence 1 13346799999999974322222 2233334333211 1247999999999975432111111 344
Q ss_pred HHHHcCCcEEEeeCCCcccc-ccHHHHHHHHHHHHHHHHH
Q 036158 172 ILQLCDNRCVLFDNKTKDTA-KRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~i~~~~~~ 210 (225)
+.+..+..++ ..|+ .++.+++++++.|.+.+.+
T Consensus 153 ~~~~~~~~~~------e~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 153 LAGRFGCLFF------EVSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp HHHHHTCEEE------ECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCcEE------EEeecCccccHHHHHHHHHHHHhh
Confidence 4455554333 3455 5679999999999876643
No 127
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.73 E-value=1e-17 Score=144.63 Aligned_cols=119 Identities=13% Similarity=0.175 Sum_probs=85.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccc--------------------cCCCCCceeEEEEEEEEeeCCceEEEEeC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKS--------------------KAGSSGVTKTCEMQRTMLKDGQVVNVIDT 76 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~--------------------~~~~~~~t~~~~~~~~~~~~~~~~~liDt 76 (225)
....+|+|+|++|+|||||+|+|++...... .....+.|.......+.+ .+..++||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDT 89 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDT 89 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEEC
Confidence 3568999999999999999999972211100 000123454555566677 7889999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158 77 PGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED 152 (225)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~ 152 (225)
||+.++.. . +..+...+|++|+|+|+.+.....+...+..+... ..|+++|+||+|....
T Consensus 90 PG~~df~~-------~----~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~-----~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 90 PGHADFTE-------D----TYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR-----HTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCSTTCCH-------H----HHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT-----TCCEEEEEECTTSCCS
T ss_pred CCchhHHH-------H----HHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCccc
Confidence 99987631 1 22345577999999999878888777777666542 3799999999998644
No 128
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.73 E-value=7.5e-17 Score=121.07 Aligned_cols=164 Identities=18% Similarity=0.116 Sum_probs=99.7
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHH
Q 036158 14 SPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSK 91 (225)
Q Consensus 14 ~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~ 91 (225)
....+.++|+|+|.+|+|||||+|++++...... . ..|.......+.+ ++. .+.+|||||...+.
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~-~---~~t~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-------- 81 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQE-E---SPEGGRFKKEIVV-DGQSYLLLIRDEGGPPELQ-------- 81 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCC-C---CTTCEEEEEEEEE-TTEEEEEEEEECSSSCCHH--------
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCC-c---CCCcceEEEEEEE-CCEEEEEEEEECCCChhhh--------
Confidence 3456789999999999999999999997664322 1 1122222344555 553 67789999976431
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHH
Q 036158 92 EIVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 170 (225)
Q Consensus 92 ~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~ 170 (225)
++..+|++++|+|++++.+... ..++..+.... .....|+++|.||+|+.......+. .+...
T Consensus 82 --------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~v~-------~~~~~ 145 (184)
T 3ihw_A 82 --------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFR-NASEVPMVLVGTQDAISAANPRVID-------DSRAR 145 (184)
T ss_dssp --------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTS-CGGGSCEEEEEECTTCBTTBCCCSC-------HHHHH
T ss_pred --------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccccccccccC-------HHHHH
Confidence 1224699999999985432222 22333333221 1134799999999997532111111 01134
Q ss_pred HHHHHcC-CcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 171 EILQLCD-NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 171 ~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
++....+ ..++ ..|+.++.+++++++.+.+.+.+..
T Consensus 146 ~~~~~~~~~~~~------e~Sa~~~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 146 KLSTDLKRCTYY------ETCATYGLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp HHHHHTTTCEEE------EEBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCeEE------EecCCCCCCHHHHHHHHHHHHHHHh
Confidence 4555554 3333 3455667899999999988776553
No 129
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.73 E-value=1.9e-17 Score=124.30 Aligned_cols=172 Identities=17% Similarity=0.158 Sum_probs=98.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH---
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC--- 96 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~--- 96 (225)
++|+++|.+|+|||||+|++++.... . ...++.|..... +.+ . .+.+|||||+.+.........+.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~-~~~~~~t~~~~~--~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR-R-GKRPGVTRKIIE--IEW-K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS-S-SSSTTCTTSCEE--EEE-T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc-c-CCCCCccceeEE--Eec-C--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 68999999999999999999987632 2 223344444433 233 2 689999999875543332222223222
Q ss_pred -HhhcCCCccEEEEEEeCCCCCCHHHHHHH---------HHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCC
Q 036158 97 -IGMTKDGIHAVLVVFSVRNRFSEEEGAAI---------HILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECP 166 (225)
Q Consensus 97 -~~~~~~~~~~ii~v~~~~~~~~~~~~~~~---------~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~ 166 (225)
+......++++++|+|.. .+......+. +.+.... ....|+++|+||+|..... .+.
T Consensus 75 ~~~~~~~~~~~v~~v~d~~-s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~----~~~------ 141 (190)
T 2cxx_A 75 FIEDNAKNIDVAVLVVDGK-AAPEIIKRWEKRGEIPIDVEFYQFLR--ELDIPTIVAVNKLDKIKNV----QEV------ 141 (190)
T ss_dssp HHHHHGGGCCEEEEEEETT-HHHHHHHHHHHTTCCCHHHHHHHHHH--HTTCCEEEEEECGGGCSCH----HHH------
T ss_pred HHHhhhccCCEEEEEEcch-hhhhHHHhhhccCccHHHHHHHHHHH--hcCCceEEEeehHhccCcH----HHH------
Confidence 222244567888888875 2211101111 1111111 1247999999999976542 111
Q ss_pred chHHHHHHHcCCcEEEe-eCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158 167 KPLKEILQLCDNRCVLF-DNKTKDTAKRTEQVGKLLSLVNSVIVQNGG 213 (225)
Q Consensus 167 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~ 213 (225)
..++.+..+..+..+ ......|+.++.+++++++.|.+.+.+..+
T Consensus 142 --~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 142 --INFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp --HHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred --HHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 333444444321000 011345667789999999999988877643
No 130
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.72 E-value=4.1e-16 Score=128.90 Aligned_cols=170 Identities=15% Similarity=0.117 Sum_probs=110.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcH-HHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE-FVSKEIVK 95 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~-~~~~~~~~ 95 (225)
...++|+++|.+|+|||||+|+|++.... . ...+..|.......+.. .+..+.+|||||+.+...... .... .
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~-~-~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~---~ 238 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPE-I-ASYPFTTRGINVGQFED-GYFRYQIIDTPGLLDRPISERNEIEK---Q 238 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCE-E-ECCTTCSSCEEEEEEEE-TTEEEEEEECTTTSSSCSTTSCHHHH---H
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-c-CCCCCeeeceeEEEEEe-cCceEEEEeCCCccccchhhhhHHHH---H
Confidence 45689999999999999999999987732 2 22345566666666665 677899999999976432111 1111 1
Q ss_pred HHhhcCCCccEEEEEEeCCCCC--CHH-HHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRF--SEE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 172 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~--~~~-~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~ 172 (225)
.+......+|++++|+|+.+.. +.. ...++..+...++ ..|+++|+||+|..... .+++ ..+.
T Consensus 239 ~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~~~--~~~~---------~~~~ 304 (357)
T 2e87_A 239 AILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVADEE--NIKR---------LEKF 304 (357)
T ss_dssp HHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCCHH--HHHH---------HHHH
T ss_pred HHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCChH--HHHH---------HHHH
Confidence 2222334679999999986433 333 3445566655443 38999999999976432 2221 2333
Q ss_pred HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
+...+.++ ...|+.++.++++|++.|.+.+....
T Consensus 305 ~~~~~~~~------~~iSA~~g~gi~~l~~~i~~~l~~~~ 338 (357)
T 2e87_A 305 VKEKGLNP------IKISALKGTGIDLVKEEIIKTLRPLA 338 (357)
T ss_dssp HHHTTCCC------EECBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCe------EEEeCCCCcCHHHHHHHHHHHHHHHH
Confidence 44444333 34566677999999999998886643
No 131
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.72 E-value=1.3e-16 Score=129.17 Aligned_cols=126 Identities=18% Similarity=0.153 Sum_probs=84.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH-HHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI-VKC 96 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~-~~~ 96 (225)
..++|+++|.+|+|||||+|++++...... ....++|.........+.++..+.+|||||.... .+.+ ...
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~-~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~ 73 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFD-TRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF-------MENYFTKQ 73 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGG-GGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH-------HHHHHTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcc-ccCcCCccceEEEEEEeCCceEEEEEECCCcHHH-------hhhhhhhH
Confidence 358999999999999999999988742222 1245567666666666545679999999996422 1111 123
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEG-AAIHILESLFGKKISDYMIVVFTGGDELE 151 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~vv~~k~D~~~ 151 (225)
...+...+|++|+|+|+.++.+..+. .+.+++.+........|+++|+||+|+..
T Consensus 74 ~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 74 KDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp HHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred HHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 33445688999999999855443433 23444544432223489999999999865
No 132
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.72 E-value=1.3e-16 Score=133.71 Aligned_cols=167 Identities=19% Similarity=0.213 Sum_probs=109.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc------cc--------ccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCC
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA------FK--------SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS 83 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~------~~--------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~ 83 (225)
+.++|+++|++|+|||||+++|++... +. ......+.|.......+.. .+..+.||||||+.+
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~~~iiDtpG~~~-- 78 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHAD-- 78 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHHH--
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc-CCeEEEEEECCChHH--
Confidence 568999999999999999999986421 00 0001234566665555555 678999999999642
Q ss_pred CCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc-EEEEEecCCCCCCCcccHHHHhh
Q 036158 84 ADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLEDYLG 162 (225)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~vv~~k~D~~~~~~~~~~~~~~ 162 (225)
+...+......+|++|+|+|+.+.......+.+..+... ..| +++++||+|+... ...++....
T Consensus 79 ---------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~-----~vp~iivviNK~Dl~~~-~~~~~~~~~ 143 (397)
T 1d2e_A 79 ---------YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI-----GVEHVVVYVNKADAVQD-SEMVELVEL 143 (397)
T ss_dssp ---------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCCEEEEEECGGGCSC-HHHHHHHHH
T ss_pred ---------HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCeEEEEEECcccCCC-HHHHHHHHH
Confidence 333444566789999999999877777777777655542 245 7899999998642 122333333
Q ss_pred hcCCchHHHHHHHcCCc---EEEeeCCCccccccHH---------H-HHHHHHHHHHHHHHc
Q 036158 163 RECPKPLKEILQLCDNR---CVLFDNKTKDTAKRTE---------Q-VGKLLSLVNSVIVQN 211 (225)
Q Consensus 163 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---------~-v~~l~~~i~~~~~~~ 211 (225)
+ ++++++.++.. +.. .+.||.++. + +.+|++.|.+.++..
T Consensus 144 ~-----~~~~l~~~~~~~~~~~~----i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p 196 (397)
T 1d2e_A 144 E-----IRELLTEFGYKGEETPI----IVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP 196 (397)
T ss_dssp H-----HHHHHHHTTSCTTTSCE----EECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCC
T ss_pred H-----HHHHHHHcCCCcccCcE----EEeehhhcccccCCCccCCcHHHHHHHHHHhCCCC
Confidence 3 56677666531 111 223444433 4 899999998877653
No 133
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=7.6e-16 Score=118.15 Aligned_cols=167 Identities=18% Similarity=0.130 Sum_probs=97.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
...++|+|+|.+|+|||||+|++.+........ .+.++.......+.+ ++. .+.+|||+|... . . .
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~-~~~~~~l~~~Dt~g~~~------~--~--~ 102 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMV-DGESATIILLDMWENKG------E--N--E 102 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEE-TTEEEEEEEECCTTTTH------H--H--H
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEE-CCeeeEEEEeecCCCcc------h--h--h
Confidence 456899999999999999999999754311111 112222222333445 444 568899999541 0 1 1
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEEG-AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
.....++..+|++|+|++++++-+-... .++..+.+.. .....|+++|.||+|+........++ .+.+.
T Consensus 103 ~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~-~~~~~piilVgNK~DL~~~r~v~~~e---------~~~~a 172 (211)
T 2g3y_A 103 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR-QTEDIPIILVGNKSDLVRCREVSVSE---------GRACA 172 (211)
T ss_dssp HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSG-GGTTSCEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEChHHhcCceEeHHH---------HHHHH
Confidence 1223466788999999999743222221 1222232211 11247999999999986432111111 12222
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
...+..+ ...||+++.+++++++.|.+.+...
T Consensus 173 ~~~~~~~------~e~SAk~g~~v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 173 VVFDCKF------IETSAAVQHNVKELFEGIVRQVRLR 204 (211)
T ss_dssp HHHTCEE------EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHcCCEE------EEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 3334322 2356777899999999998877554
No 134
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.72 E-value=1.3e-16 Score=121.90 Aligned_cols=169 Identities=14% Similarity=0.080 Sum_probs=99.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
...++|+|+|.+|+|||||+|+|++...... ...+........+.+. ....+.||||||...+. .
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~ 91 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPEN---YVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD-----------N 91 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSS---CCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGT-----------T
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCC---cCCccceeEEEEEEECCEEEEEEEEeCCCcHhhh-----------H
Confidence 4578999999999999999999998664211 1111111112233331 12479999999975432 1
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh---cC-CchH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR---EC-PKPL 169 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~---~~-~~~~ 169 (225)
....+...+|++|+|+|+.++.+... ..++..+.+... ..|+++|.||+|+.... ....++... .. .+..
T Consensus 92 ~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~ 167 (205)
T 1gwn_A 92 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQG 167 (205)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHH
T ss_pred HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEechhhccch-hhhhhhcccccCCCCHHHH
Confidence 22345678899999999974432222 233444444322 37999999999986432 111111111 00 1113
Q ss_pred HHHHHHcCC-cEEEeeCCCccccc-cHHHHHHHHHHHHHHHH
Q 036158 170 KEILQLCDN-RCVLFDNKTKDTAK-RTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 170 ~~~~~~~~~-~~~~~~~~~~~~~~-~~~~v~~l~~~i~~~~~ 209 (225)
.++.+..+. .++ ..|++ ++.+++++++.+.+.+-
T Consensus 168 ~~~~~~~~~~~~~------e~SAk~~~~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 168 ANMAKQIGAATYI------ECSALQSENSVRDIFHVATLACV 203 (205)
T ss_dssp HHHHHHHTCSEEE------ECCTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEE------EeeeccCCcCHHHHHHHHHHHHh
Confidence 444444442 222 34555 57899999999987654
No 135
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.72 E-value=1.5e-16 Score=130.12 Aligned_cols=160 Identities=13% Similarity=0.089 Sum_probs=99.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
+.++|+|+|.+|+|||||+|+|++...... ..|.......+.. .+..+.||||||...+... .
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-----~pT~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~-----------~ 226 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDKIRPL-----------W 226 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECC-----CCS-----------H
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-----ccccceEEEEEec-CcEEEEEEECCCCHhHHHH-----------H
Confidence 457999999999999999999998774222 1355556666676 7889999999996544321 2
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
..++..+|++|+|+|++++.+... ...++....... ...|+++|+||+|+.... ..++.... +..
T Consensus 227 ~~~~~~ad~vilV~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~---------~~~ 293 (329)
T 3o47_A 227 RHYFQNTQGLIFVVDSNDRERVNE--AREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDK---------LGL 293 (329)
T ss_dssp HHHHTTEEEEEEEEETTCSSSHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHH---------HTC
T ss_pred HHHhccCCEEEEEEECCchHHHHH--HHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHH---------hch
Confidence 234457899999999975433322 222333322221 247999999999987553 22222211 111
Q ss_pred c--C-CcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 176 C--D-NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 176 ~--~-~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
. . ..+.+ ...|+.++.++++|++.|.+.+.+.
T Consensus 294 ~~~~~~~~~~----~~vSAk~g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 294 HSLRHRNWYI----QATCATSGDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp TTCCSSCEEE----EECBTTTTBTHHHHHHHHHHHHTC-
T ss_pred hhhhcCCCEE----EEEECCCCcCHHHHHHHHHHHHHhc
Confidence 0 1 11222 2346677899999999998877543
No 136
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.72 E-value=5.7e-17 Score=137.30 Aligned_cols=160 Identities=13% Similarity=0.147 Sum_probs=101.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCcccccc-------------------------------CCCCCceeEEEEEEEE
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSK-------------------------------AGSSGVTKTCEMQRTM 64 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~-------------------------------~~~~~~t~~~~~~~~~ 64 (225)
..+.++|+++|++|+|||||+|+|++....... ....+.|.......+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 355689999999999999999999865311000 0012445555555566
Q ss_pred eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEE
Q 036158 65 LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVF 144 (225)
Q Consensus 65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~ 144 (225)
. .+..+.||||||+.++ ...+. .....+|++|+|+|+.++......+.+..+... + .+++++|+
T Consensus 101 ~-~~~~~~iiDtpGh~~f-------~~~~~----~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~-~---~~~iIvvi 164 (434)
T 1zun_B 101 T-AKRKFIIADTPGHEQY-------TRNMA----TGASTCDLAIILVDARYGVQTQTRRHSYIASLL-G---IKHIVVAI 164 (434)
T ss_dssp C-SSEEEEEEECCCSGGG-------HHHHH----HHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT-T---CCEEEEEE
T ss_pred c-CCceEEEEECCChHHH-------HHHHH----HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-C---CCeEEEEE
Confidence 6 6788999999997643 12222 234578999999999877777776666655442 2 14789999
Q ss_pred ecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC--CcEEEeeCCCccccccHHHHHH
Q 036158 145 TGGDELEDNDETLEDYLGRECPKPLKEILQLCD--NRCVLFDNKTKDTAKRTEQVGK 199 (225)
Q Consensus 145 ~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~ 199 (225)
||+|+....+..++....+ ++++++.++ .....+ .+.|+.++.++++
T Consensus 165 NK~Dl~~~~~~~~~~i~~~-----~~~~~~~~g~~~~~~~~---i~vSA~~g~gi~~ 213 (434)
T 1zun_B 165 NKMDLNGFDERVFESIKAD-----YLKFAEGIAFKPTTMAF---VPMSALKGDNVVN 213 (434)
T ss_dssp ECTTTTTSCHHHHHHHHHH-----HHHHHHTTTCCCSEEEE---EECCTTTCTTTSS
T ss_pred EcCcCCcccHHHHHHHHHH-----HHHHHHHhCCCccCceE---EEEeccCCCCccc
Confidence 9999875432233444444 666777766 221211 2334555667665
No 137
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.72 E-value=2.9e-17 Score=137.99 Aligned_cols=170 Identities=15% Similarity=0.177 Sum_probs=108.8
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhCCcc-------ccc--------cCCCCCceeEEEEEEEEeeCCceEEEEeCCCC
Q 036158 15 PSNGERNLVLVGRTGNGKSATANSILGKRA-------FKS--------KAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79 (225)
Q Consensus 15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~-------~~~--------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (225)
...+.++|+++|++|+|||||+|+|++... +.. .....+.|.......+.. .+..+.||||||+
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiDtpG~ 85 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGH 85 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCS
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-CCeEEEEEECCCh
Confidence 345679999999999999999999987310 000 000234455555555555 6789999999998
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc-EEEEEecCCCCCCCcccHH
Q 036158 80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLE 158 (225)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~vv~~k~D~~~~~~~~~~ 158 (225)
.++ ... +......+|++|+|+|+.++......+.+..+... ..| +++++||+|+... ...++
T Consensus 86 ~~f-------~~~----~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~-----~ip~iivviNK~Dl~~~-~~~~~ 148 (405)
T 2c78_A 86 ADY-------IKN----MITGAAQMDGAILVVSAADGPMPQTREHILLARQV-----GVPYIVVFMNKVDMVDD-PELLD 148 (405)
T ss_dssp GGG-------HHH----HHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-----TCCCEEEEEECGGGCCC-HHHHH
T ss_pred HHH-------HHH----HHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-----CCCEEEEEEECccccCc-HHHHH
Confidence 753 122 22334577999999999877777776666665542 245 8899999998642 12233
Q ss_pred HHhhhcCCchHHHHHHHcCC---cEEEeeCCCccccccHHH------------------HHHHHHHHHHHHHHc
Q 036158 159 DYLGRECPKPLKEILQLCDN---RCVLFDNKTKDTAKRTEQ------------------VGKLLSLVNSVIVQN 211 (225)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~------------------v~~l~~~i~~~~~~~ 211 (225)
....+ ++++++.++. ... ..+.|+.++.+ +.+|++.|.++++..
T Consensus 149 ~~~~~-----~~~~l~~~~~~~~~~~----~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p 213 (405)
T 2c78_A 149 LVEME-----VRDLLNQYEFPGDEVP----VIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTP 213 (405)
T ss_dssp HHHHH-----HHHHHHHTTSCTTTSC----EEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHH-----HHHHHHHhcccccCCC----EEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCC
Confidence 33333 5666666552 111 12345555555 888999988877643
No 138
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.71 E-value=3.3e-16 Score=131.67 Aligned_cols=170 Identities=17% Similarity=0.245 Sum_probs=101.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCcccc-ccCCCCCceeEEEEEEEEee--------------C--------CceEE
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFK-SKAGSSGVTKTCEMQRTMLK--------------D--------GQVVN 72 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~--------------~--------~~~~~ 72 (225)
..+.++|+++|+.++|||||+++|++..... .....++.|....+....+. + ...+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 3567999999999999999999999764211 11122444554443332221 0 15799
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158 73 VIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRF-SEEEGAAIHILESLFGKKISDYMIVVFTGGDELE 151 (225)
Q Consensus 73 liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~ 151 (225)
||||||+. .+...+......+|++|+|+|++++. .....+.+..+.. ++. +|+++++||+|+..
T Consensus 85 iiDtPGh~-----------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~---~~iivv~NK~Dl~~ 149 (408)
T 1s0u_A 85 FVDSPGHE-----------TLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGI---DKIIIVQNKIDLVD 149 (408)
T ss_dssp EEECSSHH-----------HHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTC---CCEEEEEECTTSSC
T ss_pred EEECCCHH-----------HHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCC---CeEEEEEEccCCCC
Confidence 99999953 23344445566889999999998665 5556666655543 222 58999999999876
Q ss_pred CCcccHHHHhhhcCCchHHHHHHHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 152 DNDETLEDYLGRECPKPLKEILQLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
.. ...+..++ +++++..... .+ ...+.|+.++.++++|++.|.+.+...
T Consensus 150 ~~--~~~~~~~~-----i~~~l~~~~~~~~----~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 150 EK--QAEENYEQ-----IKEFVKGTIAENA----PIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp TT--TTTTHHHH-----HHHHHTTSTTTTC----CEEEC------CHHHHHHHHHHHSCCC
T ss_pred HH--HHHHHHHH-----HHHHHhhcCCCCC----eEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 53 21122222 3444443211 11 123456777899999999998876643
No 139
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.71 E-value=7.4e-17 Score=138.33 Aligned_cols=141 Identities=16% Similarity=0.187 Sum_probs=93.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcccc-----------------------------ccCCCCCceeEEEEEEEEeeC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFK-----------------------------SKAGSSGVTKTCEMQRTMLKD 67 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~~ 67 (225)
.+.++|+++|++|+|||||+|+|++..... ......+.|.......+.. .
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~ 109 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-H 109 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-S
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-C
Confidence 456899999999999999999997552100 0111246677777777777 7
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccccE
Q 036158 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNR-------FSEEEGAAIHILESLFGKKISDYM 140 (225)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~ 140 (225)
+..+.||||||+.++ ...+......+|++|+|+|++++ +.....+.+..+.. .+ .+|+
T Consensus 110 ~~~~~iiDTPG~~~f-----------~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~---~~~i 174 (483)
T 3p26_A 110 RANFTIVDAPGHRDF-----------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LG---IHNL 174 (483)
T ss_dssp SCEEEEECCCCCGGG-----------HHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TT---CCCE
T ss_pred CceEEEEECCCcHHH-----------HHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cC---CCcE
Confidence 889999999998643 22222345578999999999754 33445555544443 22 2579
Q ss_pred EEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158 141 IVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 178 (225)
Q Consensus 141 ~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (225)
++|+||+|+....+...++...+ +.+++...+.
T Consensus 175 IvviNK~Dl~~~~~~~~~~i~~~-----~~~~l~~~g~ 207 (483)
T 3p26_A 175 IIAMNKMDNVDWSQQRFEEIKSK-----LLPYLVDIGF 207 (483)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHH-----HHHHHHHHTC
T ss_pred EEEEECcCcccchHHHHHHHHHH-----HHHHHHHcCC
Confidence 99999999876543445555444 6666666654
No 140
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.71 E-value=8.1e-17 Score=133.44 Aligned_cols=152 Identities=15% Similarity=0.211 Sum_probs=103.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT 100 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (225)
+|+++|++++|||||+|+|+ ..+.|.......+.+ ++..+.||||||+.++ ...+.. .
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~-~~~~i~iiDtPGh~~f-------~~~~~~----~ 80 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDK-EGRNMVFVDAHSYPKT-------LKSLIT----A 80 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECS-SSSEEEEEECTTTTTC-------HHHHHH----H
T ss_pred EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEec-CCeEEEEEECCChHHH-------HHHHHH----H
Confidence 99999999999999999998 234555666666777 6788999999999765 122222 2
Q ss_pred CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccE-EEEEe-cCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158 101 KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYM-IVVFT-GGDELEDNDETLEDYLGRECPKPLKEILQLCDN 178 (225)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~vv~~-k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (225)
...+|++|+|+| +........+.+..+... ..|. ++++| |+|+ .. ...++...+ ++++++..+.
T Consensus 81 ~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~-----~i~~~ivvvNNK~Dl-~~--~~~~~~~~~-----i~~~l~~~~~ 146 (370)
T 2elf_A 81 LNISDIAVLCIP-PQGLDAHTGECIIALDLL-----GFKHGIIALTRSDST-HM--HAIDELKAK-----LKVITSGTVL 146 (370)
T ss_dssp HHTCSEEEEEEC-TTCCCHHHHHHHHHHHHT-----TCCEEEEEECCGGGS-CH--HHHHHHHHH-----HHHHTTTSTT
T ss_pred HHHCCEEEEEEc-CCCCcHHHHHHHHHHHHc-----CCCeEEEEEEeccCC-CH--HHHHHHHHH-----HHHHHHhcCC
Confidence 246799999999 767776676666665542 2455 88999 9998 32 233333333 4555554432
Q ss_pred c-EEEeeCCCcccccc---HHHHHHHHHHHHHHHHH
Q 036158 179 R-CVLFDNKTKDTAKR---TEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 179 ~-~~~~~~~~~~~~~~---~~~v~~l~~~i~~~~~~ 210 (225)
. +..+.. ..||.+ +.++++|++.|.+.+..
T Consensus 147 ~~~~ii~~--~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 147 QDWECISL--NTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp TTCEEEEC--CCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred CceEEEec--ccccccCcCCCCHHHHHHHHHhhccc
Confidence 1 122210 045666 79999999999887764
No 141
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.71 E-value=9e-17 Score=122.04 Aligned_cols=157 Identities=13% Similarity=0.126 Sum_probs=93.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
.+..+|+++|++|+|||||+|++.+...... . .|.......+.+ ++..+.+|||||...... .
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~-~----~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~-----------~ 85 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-V----PTLHPTSEELTI-AGMTFTTFDLGGHIQARR-----------V 85 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-----------CCCCCSCEEEEE-TTEEEEEEEECC----CC-----------G
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCcc-C----CCCCceeEEEEE-CCEEEEEEECCCcHhhHH-----------H
Confidence 4568999999999999999999998764221 1 122222345556 678999999999764421 2
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
+..++..+|++++|+|+.++-+-. ....++.+.... ....|+++|.||+|+.... ..++. ++.+.
T Consensus 86 ~~~~~~~~d~~i~v~D~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~---------~~~~~ 152 (198)
T 1f6b_A 86 WKNYLPAINGIVFLVDCADHERLL--ESKEELDSLMTDETIANVPILILGNKIDRPEAI--SEERL---------REMFG 152 (198)
T ss_dssp GGGGGGGCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCC--CHHHH---------HHHHT
T ss_pred HHHHHhcCCEEEEEEECCCHHHHH--HHHHHHHHHHhCcccCCCcEEEEEECCCccccC--CHHHH---------HHHhC
Confidence 234556789999999997443222 223344443322 1347999999999986522 22221 22221
Q ss_pred HcC--------------CcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158 175 LCD--------------NRCVLFDNKTKDTAKRTEQVGKLLSLVNS 206 (225)
Q Consensus 175 ~~~--------------~~~~~~~~~~~~~~~~~~~v~~l~~~i~~ 206 (225)
... .+.. .....||.++.+++++++.|.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~---~~~~~SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 153 LYGQTTGKGSVSLKELNARPL---EVFMCSVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp CTTTCCCSSCCCTTTCCSCCE---EEEECBTTTTBSHHHHHHHHHT
T ss_pred cccccccccccccccccCceE---EEEEEECCCCCCHHHHHHHHHH
Confidence 110 1111 1234577788999999999864
No 142
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.71 E-value=1.4e-16 Score=121.88 Aligned_cols=170 Identities=16% Similarity=0.076 Sum_probs=101.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
...++|+++|.+|+|||||+|++++...... ..+++.......+.+ ++ ..+.||||||...+..
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~---------- 72 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTD---YIPTVFDNFSANVAV-DGQIVNLGLWDTAGQEDYSR---------- 72 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSS---CCCSSCCCEEEEEEC-SSCEEEEEEECCCCCCCCCC----------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCcc---CCCccceeEEEEEEE-CCEEEEEEEEECCCcHHHHH----------
Confidence 4569999999999999999999997653211 111222222223334 33 3899999999876532
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHh-hhcCCchHHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL-GRECPKPLKE 171 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~-~~~~~~~~~~ 171 (225)
.+..++..+|++|+|+|+.++.+.... .++..+....+ ..|+++|+||+|+.... ...... .........+
T Consensus 73 -~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~--~~~~~~~~~v~~~~~~~ 146 (212)
T 2j0v_A 73 -LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLRDDK--GYLADHTNVITSTQGEE 146 (212)
T ss_dssp ---CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTCH--HHHHTCSSCCCHHHHHH
T ss_pred -HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhhhCc--cccccccCCCCHHHHHH
Confidence 122356788999999999744322221 34444444322 47999999999976542 110000 0000111344
Q ss_pred HHHHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 172 ILQLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 172 ~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
+....+. .++ ..|+.++.+++++++.|.+.+.+..
T Consensus 147 ~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 147 LRKQIGAAAYI------ECSSKTQQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp HHHHHTCSEEE------ECCTTTCTTHHHHHHHHHHHHHCC-
T ss_pred HHHHcCCceEE------EccCCCCCCHHHHHHHHHHHHhhhh
Confidence 4444453 332 3455667899999999988876543
No 143
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.71 E-value=1e-16 Score=119.19 Aligned_cols=158 Identities=18% Similarity=0.096 Sum_probs=95.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
.+.++|+++|.+|+|||||+|++++..... .. +. +.......+.+ ++ ..+.+|||||... .
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~--~t-~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----~------- 67 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LE--KT-ESEQYKKEMLV-DGQTHLVLIREEAGAPD-----A------- 67 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CS--SC-SSSEEEEEEEE-TTEEEEEEEEECSSSCC-----H-------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cC--CC-cceeEEEEEEE-CCEEEEEEEEECCCCch-----h-------
Confidence 457999999999999999999999876432 11 11 11122233444 44 3688999999763 0
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcc-cccccEEEEEecCCCCCCC--cccHHHHhhhcCCchHH
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEEG-AAIHILESLFGK-KISDYMIVVFTGGDELEDN--DETLEDYLGRECPKPLK 170 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~~-~~~~~~~vv~~k~D~~~~~--~~~~~~~~~~~~~~~~~ 170 (225)
.++..+|++|+|+|++++.+.... .+++++...... ....|+++|.||+|+.... ....++ ..
T Consensus 68 ----~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~---------~~ 134 (178)
T 2iwr_A 68 ----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDAR---------AR 134 (178)
T ss_dssp ----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHH---------HH
T ss_pred ----HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHH---------HH
Confidence 122346999999999754333222 233345554321 1247999999999974221 111111 23
Q ss_pred HHHHHc-CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 171 EILQLC-DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 171 ~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
++.... +..++ ..|+.++.+++++++.+.+.+.+
T Consensus 135 ~~~~~~~~~~~~------~~Sa~~~~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 135 ALXADMKRCSYY------ETXATYGLNVDRVFQEVAQKVVT 169 (178)
T ss_dssp HHHHHHSSEEEE------EEBTTTTBTHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCeEE------EEeccccCCHHHHHHHHHHHHHH
Confidence 333333 22222 34556678999999998876654
No 144
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.71 E-value=1.4e-16 Score=133.92 Aligned_cols=170 Identities=14% Similarity=0.212 Sum_probs=107.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCcccc-ccCCCCCceeEEEEEEEEeeC----------------------CceEE
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFK-SKAGSSGVTKTCEMQRTMLKD----------------------GQVVN 72 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~----------------------~~~~~ 72 (225)
..+.++|+++|+.++|||||+++|++..... .....++.|....+....+.. ...+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 4567899999999999999999999754211 111224445554443333210 16799
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158 73 VIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRF-SEEEGAAIHILESLFGKKISDYMIVVFTGGDELE 151 (225)
Q Consensus 73 liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~ 151 (225)
||||||+.+ +...+......+|++|+|+|+++.. .....+.+..+... +. +|+++|+||+|+..
T Consensus 87 iiDtPGh~~-----------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~---~~iivviNK~Dl~~ 151 (410)
T 1kk1_A 87 FIDAPGHEA-----------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQ---KNIIIAQNKIELVD 151 (410)
T ss_dssp EEECSSHHH-----------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSC
T ss_pred EEECCChHH-----------HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CC---CcEEEEEECccCCC
Confidence 999999642 2333334455779999999998665 55666666655442 22 58999999999765
Q ss_pred CCcccHHHHhhhcCCchHHHHHHHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 152 DNDETLEDYLGRECPKPLKEILQLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
.. ...+..++ +++++..... .+ ...+.|+.++.++++|++.|.+.++..
T Consensus 152 ~~--~~~~~~~~-----i~~~l~~~~~~~~----~~i~vSA~~g~gi~~L~~~l~~~~~~p 201 (410)
T 1kk1_A 152 KE--KALENYRQ-----IKEFIEGTVAENA----PIIPISALHGANIDVLVKAIEDFIPTP 201 (410)
T ss_dssp HH--HHHHHHHH-----HHHHHTTSTTTTC----CEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HH--HHHHHHHH-----HHHHHHhcCcCCC----eEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 42 22222233 4445543211 11 122446677799999999998876644
No 145
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.70 E-value=1.1e-16 Score=137.87 Aligned_cols=172 Identities=12% Similarity=0.071 Sum_probs=105.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
...++|+|+|.+|+|||||+|+|++.... ....|.......+.+ .+..+.||||||...+. ..
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-----~~~~T~~~~~~~~~~-~~~~~~l~Dt~G~~~~~-----------~~ 382 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-----TTIPTVGFNVETVTY-KNVKFNVWDVGGQDKIR-----------PL 382 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-----CCCCCSSEEEEEEES-SSCEEEEEEECCCGGGS-----------GG
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-----CcCCccceeEEEEEe-CCEEEEEEECCCcHHHH-----------HH
Confidence 45689999999999999999999987732 122355666666777 77899999999965432 22
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
+..++..+|++|+|+|+.++.+.. ....++.++... ....|+++|+||+|+.... ..++.... ... .
T Consensus 383 ~~~~~~~ad~~i~V~D~~~~~s~~--~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~-~~~------~ 451 (497)
T 3lvq_E 383 WRHYYTGTQGLIFVVDCADRDRID--EARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEK-LGL------T 451 (497)
T ss_dssp GGGGGTTCCEEEEEEETTCGGGHH--HHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC--CHHHHHHH-TTC------T
T ss_pred HHHHhccCCEEEEEEECcchhHHH--HHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC--CHHHHHHH-hch------h
Confidence 345677899999999997543222 223333333322 1247999999999986543 22222111 000 0
Q ss_pred HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCCCHH
Q 036158 175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDE 219 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~~~~ 219 (225)
....+.. .....||.++.+++++++.|.+.+++......+.+
T Consensus 452 ~~~~~~~---~~~~~SA~~g~gi~~l~~~l~~~~~~~~~~~~~~~ 493 (497)
T 3lvq_E 452 RIRDRNW---YVQPSCATSGDGLYEGLTWLTSNYKSKLAAALEHH 493 (497)
T ss_dssp TCCSSCE---EEEECBTTTTBTHHHHHHHHHHHCC----------
T ss_pred hhhcCCe---EEEEEECCCCCCHHHHHHHHHHHHHhcCCCCCccc
Confidence 0011111 12345777889999999999999888777666554
No 146
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.70 E-value=6.1e-16 Score=118.14 Aligned_cols=175 Identities=14% Similarity=0.223 Sum_probs=98.6
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCc--HHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS--EFVSKEI 93 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~--~~~~~~~ 93 (225)
..+..+|+++|++|+|||||+|+|++...........+.|..... +.+ ++ .+.++||||+....... .+.+...
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~--~~~-~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~ 98 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL--FEV-AD-GKRLVDLPGYGYAEVPEEMKRKWQRA 98 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE--EEE-ET-TEEEEECCCCC------CCHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE--EEe-cC-CEEEEECcCCcccccCHHHHHHHHHH
Confidence 455689999999999999999999987622111223344443322 333 22 68899999986532111 1112222
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 173 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
..........++++++|+|+....+..+.+..+++.. ...|++++.||+|..... ........ ++.++
T Consensus 99 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-----~~~~~~~v~nK~D~~s~~--~~~~~~~~-----~~~~~ 166 (210)
T 1pui_A 99 LGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-----SNIAVLVLLTKADKLASG--ARKAQLNM-----VREAV 166 (210)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGGSCHH--HHHHHHHH-----HHHHH
T ss_pred HHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-----cCCCeEEEEecccCCCch--hHHHHHHH-----HHHHH
Confidence 2222222356799999999976666555555555543 236888999999976432 11111222 44455
Q ss_pred HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
...+..... .+.|+..+.+++++++.|.++..+
T Consensus 167 ~~~~~~~~~----~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 167 LAFNGDVQV----ETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp GGGCSCEEE----EECBTTTTBSHHHHHHHHHHHHC-
T ss_pred HhcCCCCce----EEEeecCCCCHHHHHHHHHHHHhh
Confidence 444432222 234556678999999999887655
No 147
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.70 E-value=6.2e-17 Score=120.64 Aligned_cols=167 Identities=16% Similarity=0.061 Sum_probs=92.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
...++|+++|.+|+|||||+|++++...... ..+++.......+... ....+.+|||||..... .
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~ 71 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTD---YVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYN-----------R 71 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC-------------CBCCCC-------CEEECCCC-CTTT-----------T
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCC---CCCeeeeeEEEEEEECCEEEEEEEEECCCChhhh-----------h
Confidence 4568999999999999999999997653211 1111111111112220 22356799999976543 1
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHh---hhcCCchHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL---GRECPKPLK 170 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~---~~~~~~~~~ 170 (225)
.+..+...+|++++|+|+.++.+.... .++..+..... ..|+++|+||+|+.... ...... .....+...
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~--~~~~~~~~~~~v~~~~~~ 146 (182)
T 3bwd_D 72 LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLRDDK--QFFIDHPGAVPITTVQGE 146 (182)
T ss_dssp TGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTCH--HHHHHC--CCCCCHHHHH
T ss_pred hHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhhcCc--ccccccccCCCCCHHHHH
Confidence 223456688999999999744332222 24444544322 47999999999976542 110000 000011134
Q ss_pred HHHHHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158 171 EILQLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 171 ~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~ 208 (225)
++....+. .++ ..|+.++.+++++++.|.+.+
T Consensus 147 ~~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 147 ELKKLIGAPAYI------ECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp HHHHHHTCSEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEE------EEECCCCCCHHHHHHHHHHHH
Confidence 44444453 332 345667799999999997765
No 148
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.70 E-value=1.1e-16 Score=128.83 Aligned_cols=173 Identities=12% Similarity=0.135 Sum_probs=97.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCC----CCC----------------------ceeE-------------
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAG----SSG----------------------VTKT------------- 57 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~----~~~----------------------~t~~------------- 57 (225)
...++|+|+|.+|+|||||+|+|++....+.... .++ +|..
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 4568999999999999999999999875422110 011 1100
Q ss_pred ----------EEEEEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHHHHHHhhcCCCccEEE-EEEeCCCCCCHHHH-H
Q 036158 58 ----------CEMQRTMLKDGQVVNVIDTPGLFDSSA--DSEFVSKEIVKCIGMTKDGIHAVL-VVFSVRNRFSEEEG-A 123 (225)
Q Consensus 58 ----------~~~~~~~~~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ii-~v~~~~~~~~~~~~-~ 123 (225)
.....+..+....+.||||||+.+... ..+.....+...+..+...++.++ +|+|+...++..+. .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 001111222246899999999985431 012122233344444444566555 78898755555442 2
Q ss_pred HHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHH
Q 036158 124 AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSL 203 (225)
Q Consensus 124 ~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 203 (225)
+++.+.. ...|+++|+||+|...... ...+.... .+..+...+. .....||.++.++++|++.
T Consensus 184 ~~~~~~~-----~~~~~i~V~NK~Dl~~~~~-~~~~~~~~--------~~~~~~~~~~---~v~~~SA~~~~gi~~l~~~ 246 (299)
T 2aka_B 184 IAKEVDP-----QGQRTIGVITKLDLMDEGT-DARDVLEN--------KLLPLRRGYI---GVVNRSQKDIDGKKDITAA 246 (299)
T ss_dssp HHHHHCT-----TCSSEEEEEECGGGSCTTC-CCHHHHTT--------CSSCCTTCEE---ECCCCCCBCTTSCBCHHHH
T ss_pred HHHHhCC-----CCCeEEEEEEccccCCCCc-hHHHHHhC--------CcCcCCCCcE---EEECCChhhccccccHHHH
Confidence 3333321 2479999999999876531 11222111 0001111222 2345677788899999888
Q ss_pred HHH
Q 036158 204 VNS 206 (225)
Q Consensus 204 i~~ 206 (225)
|.+
T Consensus 247 l~~ 249 (299)
T 2aka_B 247 LAA 249 (299)
T ss_dssp HHH
T ss_pred HHH
Confidence 866
No 149
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.70 E-value=2.3e-16 Score=132.41 Aligned_cols=171 Identities=16% Similarity=0.123 Sum_probs=103.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCcee--------------EEEEEEEEe----eCCceEEEEeCC
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTK--------------TCEMQRTML----KDGQVVNVIDTP 77 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~--------------~~~~~~~~~----~~~~~~~liDtP 77 (225)
..+.++|+++|++|+|||||+|+|++....... .....+. ........+ .....+.|||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKL-GYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSS-EEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCccccccc-CccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 456799999999999999999999985421110 0000000 000000000 012579999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCccc
Q 036158 78 GLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRF-SEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDET 156 (225)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~ 156 (225)
|+.++ ...+ ......+|++|+|+|+.+.. .....+.+..+... +. +|+++|+||+|+.... .
T Consensus 84 Gh~~~-------~~~~----~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~---~~iivviNK~Dl~~~~--~ 146 (403)
T 3sjy_A 84 GHEVL-------MATM----LSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNKVDVVSKE--E 146 (403)
T ss_dssp CCGGG-------HHHH----HHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSCHH--H
T ss_pred CcHHH-------HHHH----HHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CC---CCEEEEEECccccchH--H
Confidence 97543 2222 23345679999999998665 55556666655543 22 5899999999987542 3
Q ss_pred HHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 157 LEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
..+..++ +.+.+..++.... ...+.|+.++.++++|++.|.+.+....
T Consensus 147 ~~~~~~~-----i~~~l~~~~~~~~---~ii~vSA~~g~gi~~L~~~l~~~l~~~~ 194 (403)
T 3sjy_A 147 ALSQYRQ-----IKQFTKGTWAENV---PIIPVSALHKINIDSLIEGIEEYIKTPY 194 (403)
T ss_dssp HHHHHHH-----HHHHHTTSTTTTC---CEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHHHHHH-----HHHHHHhhCCCCC---EEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence 3333333 4555544332111 1234566778999999999998776543
No 150
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.69 E-value=1.7e-18 Score=149.12 Aligned_cols=163 Identities=14% Similarity=0.154 Sum_probs=111.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
..++|+++|++|+|||||+|+|.+...... ..++.|.+...+.+.++.+..+.||||||+.++... .
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~--~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~-----------~ 69 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAM--EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAM-----------R 69 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHS--SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTS-----------B
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc--cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHH-----------H
Confidence 357899999999999999999997764332 345566666555566555678999999998765422 2
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH---HH
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI---LQ 174 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~---~~ 174 (225)
......+|++|+|+|++++....+.+.+..+... ..|+++++||+|+........... +.+. .+
T Consensus 70 ~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~-----~vPiIVViNKiDl~~~~~~~v~~~--------l~~~~~~~e 136 (537)
T 3izy_P 70 ARGTQVTDIVILVVAADDGVMKQTVESIQHAKDA-----HVPIVLAINKCDKAEADPEKVKKE--------LLAYDVVCE 136 (537)
T ss_dssp BSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT-----TCCEEECCBSGGGTTTSCCSSSSH--------HHHTTSCCC
T ss_pred HHHHccCCEEEEEEECCCCccHHHHHHHHHHHHc-----CCcEEEEEecccccccchHHHHHH--------HHhhhhhHH
Confidence 2456678999999999877777777766655542 368999999999865432111111 1111 11
Q ss_pred HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
.++..+ ...+.|+.++.++++|++.|..+...
T Consensus 137 ~~~~~~----~iv~vSAktG~GI~eLle~I~~l~~~ 168 (537)
T 3izy_P 137 DYGGDV----QAVHVSALTGENMMALAEATIALAEM 168 (537)
T ss_dssp CSSSSE----EECCCCSSSSCSSHHHHHHHHHHHTT
T ss_pred hcCCCc----eEEEEECCCCCCchhHHHHHHHhhhc
Confidence 112222 23456778889999999999887753
No 151
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.68 E-value=2.2e-16 Score=130.62 Aligned_cols=133 Identities=20% Similarity=0.203 Sum_probs=82.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCC--ce----------------------------------------
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSG--VT---------------------------------------- 55 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~--~t---------------------------------------- 55 (225)
..++|+|+|.+|+|||||+|+|+|....+....... .+
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 456999999999999999999999775433221110 00
Q ss_pred ----------eEEEEEEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHH
Q 036158 56 ----------KTCEMQRTMLKDGQVVNVIDTPGLFDSSA--DSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGA 123 (225)
Q Consensus 56 ----------~~~~~~~~~~~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~ 123 (225)
.......+..+....+.||||||+..... ........+...+..+...+|++|+|++.. ........
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~-~~~~~~~~ 191 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPA-NQDLATSD 191 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEET-TSCGGGCH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecc-cCCcCCHH
Confidence 00001111222345799999999987532 122344455566666677889999998764 11222223
Q ss_pred HHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158 124 AIHILESLFGKKISDYMIVVFTGGDELEDN 153 (225)
Q Consensus 124 ~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~ 153 (225)
.+..+..... ...|+++|+||+|.....
T Consensus 192 ~~~l~~~~~~--~~~~~i~V~nK~Dl~~~~ 219 (360)
T 3t34_A 192 AIKISREVDP--SGDRTFGVLTKIDLMDKG 219 (360)
T ss_dssp HHHHHHHSCT--TCTTEEEEEECGGGCCTT
T ss_pred HHHHHHHhcc--cCCCEEEEEeCCccCCCc
Confidence 4444444322 236899999999988654
No 152
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.68 E-value=5.7e-16 Score=135.27 Aligned_cols=116 Identities=16% Similarity=0.208 Sum_probs=79.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-----------------CCceEEEEeCCCCC
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-----------------DGQVVNVIDTPGLF 80 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~liDtPG~~ 80 (225)
..++|+++|++|+|||||+++|++....... ..+.|.......+.+. ....++||||||+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e--~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASRE--AGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCcccc--CCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 3578999999999999999999976542211 1123322222222210 11259999999998
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158 81 DSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELE 151 (225)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~ 151 (225)
++.... ......+|++|+|+|+++++...+.+.+..+... ..|+++++||+|+..
T Consensus 82 ~F~~~~-----------~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~-----~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 82 AFTTLR-----------KRGGALADLAILIVDINEGFKPQTQEALNILRMY-----RTPFVVAANKIDRIH 136 (594)
T ss_dssp CCTTSB-----------CSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGST
T ss_pred HHHHHH-----------HHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHc-----CCeEEEEeccccccc
Confidence 764221 2345678999999999877777777777766542 379999999999864
No 153
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.67 E-value=2.3e-16 Score=130.40 Aligned_cols=151 Identities=18% Similarity=0.238 Sum_probs=77.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCC-----CCceeEEEEEEEEee-CCc--eEEEEeCCCCCCCCCCc---
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGS-----SGVTKTCEMQRTMLK-DGQ--VVNVIDTPGLFDSSADS--- 86 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~-----~~~t~~~~~~~~~~~-~~~--~~~liDtPG~~~~~~~~--- 86 (225)
..++|+|+|++|+|||||+|+|++...+...... ...|.........+. .+. .+.+|||||+++.....
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 4588999999999999999999987654332211 112333333333221 232 68999999997653211
Q ss_pred ----HHHHHHHHHHHhh---------cCCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158 87 ----EFVSKEIVKCIGM---------TKDGIHAVLVVFSV-RNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED 152 (225)
Q Consensus 87 ----~~~~~~~~~~~~~---------~~~~~~~ii~v~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~ 152 (225)
..+...+..++.. ....+|+++|+++. ...+...+..+++.+. . ..|+++|+||+|....
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~----~--~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH----N--KVNIVPVIAKADTLTL 189 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC----S---SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc----c--CCCEEEEEECCCCCCH
Confidence 1122222222221 12346788888875 4567776655554442 2 3799999999998754
Q ss_pred CcccHHHHhhhcCCchHHHHHHHcCCcEE
Q 036158 153 NDETLEDYLGRECPKPLKEILQLCDNRCV 181 (225)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (225)
. .+..+..+ +.+.++.++.+++
T Consensus 190 ~--ev~~~k~~-----i~~~~~~~~i~~~ 211 (361)
T 2qag_A 190 K--ERERLKKR-----ILDEIEEHNIKIY 211 (361)
T ss_dssp H--HHHHHHHH-----HHHHTTCC-CCSC
T ss_pred H--HHHHHHHH-----HHHHHHHCCCCEE
Confidence 2 34333333 4555555554443
No 154
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.67 E-value=3.8e-16 Score=117.06 Aligned_cols=169 Identities=18% Similarity=0.153 Sum_probs=87.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCc-cccccCCCCCceeEEEEEEEEe------eCCceEEEEeCCCCCCCCCCcHHHHH
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKR-AFKSKAGSSGVTKTCEMQRTML------KDGQVVNVIDTPGLFDSSADSEFVSK 91 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~-~~~~~~~~~~~t~~~~~~~~~~------~~~~~~~liDtPG~~~~~~~~~~~~~ 91 (225)
.++|+|+|.+|+|||||+|+|.+.. .+.. ....|.........+ .....+.+|||||...+
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~---~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------- 69 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLG---MQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEF--------- 69 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC--------------CSEEEEEEEC---------CEEEEEEECSHHHH---------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCC---CcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHH---------
Confidence 4789999999999999999999863 2211 111222222222211 13458999999995421
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158 92 EIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 171 (225)
Q Consensus 92 ~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (225)
......++.+++++++|+|.+++... ...+..++.+........|+++|.||+|+.... ...+.... ...+
T Consensus 70 --~~~~~~~~~~~~~~i~v~d~~~~~~s-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~----~~~~ 140 (184)
T 2zej_A 70 --YSTHPHFMTQRALYLAVYDLSKGQAE-VDAMKPWLFNIKARASSSPVILVGTHLDVSDEK--QRKACMSK----ITKE 140 (184)
T ss_dssp --HTTSHHHHHHSEEEEEEEEGGGCHHH-HHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHH--HHHHHHHH----HHHH
T ss_pred --HHhhHHHccCCcEEEEEEeCCcchhH-HHHHHHHHHHHHhhCCCCcEEEEEECCCcccch--hhHHHHHH----HHHH
Confidence 11112233356999999998743211 112223333322111237899999999975431 22111111 0122
Q ss_pred HHHHcCCcEEEeeCCCccccccH-HHHHHHHHHHHHHHHH
Q 036158 172 ILQLCDNRCVLFDNKTKDTAKRT-EQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~~i~~~~~~ 210 (225)
+.+..+.... ......||+++ .++++|++.|.+.+.+
T Consensus 141 ~~~~~~~~~~--~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 141 LLNKRGFPAI--RDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp TTTCTTSCEE--EEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred HHHhcCCcch--hheEEEecccCchhHHHHHHHHHHHHhc
Confidence 2222233210 01223455566 4899999999877654
No 155
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.67 E-value=3.1e-16 Score=118.12 Aligned_cols=129 Identities=9% Similarity=0.138 Sum_probs=76.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
...++|+++|.+|+|||||+|+|.+........ ....+.. ..+ .+..+.+|||||......... .+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~-~~~~~~~-----~~~-~~~~~~l~Dt~G~~~~~~~~~-------~~ 111 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV-SQEPLSA-----ADY-DGSGVTLVDFPGHVKLRYKLS-------DY 111 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CC-CCTTCSEEEETTCCBSSCCHH-------HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccc-cCCCcee-----eee-cCCeEEEEECCCCchHHHHHH-------HH
Confidence 567899999999999999999999876322110 1111111 112 466789999999976542221 12
Q ss_pred HhhcCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcc-----cccccEEEEEecCCCCCCCcccHHHHhhh
Q 036158 97 IGMTKDGIHAVLVVFSVR-NRFSEEEGAAIHILESLFGK-----KISDYMIVVFTGGDELEDNDETLEDYLGR 163 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~-~~~~~~~~~~~~~l~~~~~~-----~~~~~~~vv~~k~D~~~~~~~~~~~~~~~ 163 (225)
+......+|++|+|+|+. +. ........++...+.. ....|+++|+||+|..... ..++..+.
T Consensus 112 ~~~~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--~~~~~~~~ 180 (193)
T 2ged_A 112 LKTRAKFVKGLIFMVDSTVDP--KKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR--PPSKIKDA 180 (193)
T ss_dssp HHHHGGGEEEEEEEEETTCCH--HHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC--CHHHHHHH
T ss_pred HHhhcccCCEEEEEEECCCCc--hhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC--CHHHHHHH
Confidence 222224579999999987 22 1222233333333221 1247999999999987664 44444443
No 156
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.66 E-value=4.9e-16 Score=128.33 Aligned_cols=126 Identities=15% Similarity=0.179 Sum_probs=89.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
.....+|+++|.||+|||||+|+|++.... ....+++|.++....+.+ .+..+.|+||||+............++..
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~--v~~~pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~a~~~~~~g~~~l~ 145 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGTESE--AAEYEFTTLVTVPGVIRY-KGAKIQMLDLPGIIDGAKDGRGRGKQVIA 145 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSBCCC--GGGTCSSCCCEEEEEEEE-TTEEEEEEECGGGCCC-----CHHHHHHH
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCCCCc--ccCCCCceeeeeeEEEEe-CCcEEEEEeCCCccCCchhhhHHHHHHHH
Confidence 344589999999999999999999998753 245678999999888888 88999999999998765555555556655
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc-ccccEEEEEecCCCC
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK-ISDYMIVVFTGGDEL 150 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~vv~~k~D~~ 150 (225)
.+.. +|++++|+|+.+++ .+.+.++.-.+.++.+ ..+|..+++||+|..
T Consensus 146 ~i~~----ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 146 VART----CNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHH----CSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHHh----cCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 5544 49999999997543 2333333222333333 346889999999963
No 157
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.48 E-value=5.8e-18 Score=129.01 Aligned_cols=168 Identities=14% Similarity=0.011 Sum_probs=96.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
...++|+++|.+|+|||||+|++++...... ...++.......+... ....+.+|||||..+.. .
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~ 93 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGE---YIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD-----------R 93 (204)
Confidence 4579999999999999999999997654211 1122222222222221 22356799999975432 2
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhh----hcCCchH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLG----RECPKPL 169 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~----~~~~~~~ 169 (225)
....+...+|++++|+|+.++.+..+. .++..+..... ..|+++|+||+|+.... ...+.... .......
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~v~~~~~ 169 (204)
T 3th5_A 94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQG 169 (204)
Confidence 223355678999999998744333322 34444444322 37999999999986542 11111100 0000112
Q ss_pred HHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158 170 KEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV 207 (225)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~ 207 (225)
.++.+..+. ......|+.++.+++++++.|.+.
T Consensus 170 ~~~~~~~~~-----~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 170 LAMAKEIGA-----VKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 222222221 123456778889999999988654
No 158
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.66 E-value=7.7e-16 Score=136.81 Aligned_cols=171 Identities=13% Similarity=0.166 Sum_probs=104.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCC--------------------------------------------
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSS-------------------------------------------- 52 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~-------------------------------------------- 52 (225)
...++|+|+|.+++|||||+|+|+|...++.+....
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 456899999999999999999999987644432110
Q ss_pred -----CceeEEEEEEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHHHHHHhhcC-CCccEEEEEEeCCCCCCHHHH-H
Q 036158 53 -----GVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA--DSEFVSKEIVKCIGMTK-DGIHAVLVVFSVRNRFSEEEG-A 123 (225)
Q Consensus 53 -----~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~ii~v~~~~~~~~~~~~-~ 123 (225)
+.+...-...+..+....++|+||||+..... ....+...+...+..+. ..+|++++|+|+...+...+. .
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 01111122233444556799999999987432 11112222222222222 578999999999866666664 4
Q ss_pred HHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH--cCCcEEEeeCCCccccccHHHHHHHH
Q 036158 124 AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL--CDNRCVLFDNKTKDTAKRTEQVGKLL 201 (225)
Q Consensus 124 ~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~ 201 (225)
+++.+.. ...|+++|+||+|....... .. .+++. ...+ ..|....+.||.++.++++|+
T Consensus 209 ll~~L~~-----~g~pvIlVlNKiDlv~~~~~-~~------------~il~~~~~~l~-lg~~~VV~iSA~~G~GvdeL~ 269 (772)
T 3zvr_A 209 IAKEVDP-----QGQRTIGVITKLDLMDEGTD-AR------------DVLENKLLPLR-RGYIGVVNRSQKDIDGKKDIT 269 (772)
T ss_dssp HHHHHCT-----TCSSEEEEEECTTSSCTTCC-SH------------HHHTTCSSCCS-SCEEECCCCCCEESSSSEEHH
T ss_pred HHHHHHh-----cCCCEEEEEeCcccCCcchh-hH------------HHHHHHhhhhh-ccCCceEEecccccccchhHH
Confidence 5544433 23799999999998865411 11 11110 0000 013344566788889999999
Q ss_pred HHHHH
Q 036158 202 SLVNS 206 (225)
Q Consensus 202 ~~i~~ 206 (225)
+.|.+
T Consensus 270 eaI~~ 274 (772)
T 3zvr_A 270 AALAA 274 (772)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99876
No 159
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.66 E-value=3.8e-15 Score=124.81 Aligned_cols=170 Identities=13% Similarity=0.115 Sum_probs=102.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM 99 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (225)
..|+|+|++|+|||||+|+|++..... ...+.+|.......+.+.+...++++||||+.+.......+...+.+.
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i--~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~--- 232 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKI--APYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRH--- 232 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEE--CCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHH---
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccc--cCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHH---
Confidence 348999999999999999999886422 234445555555556663347899999999975321111111222222
Q ss_pred cCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158 100 TKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 178 (225)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (225)
...++.+++|+++. +-...+ ....+.+..+...-...|.++|+||+|.... +.... +.+.++..+.
T Consensus 233 -~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~------~~~~~-----l~~~l~~~g~ 299 (416)
T 1udx_A 233 -IARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE------EAVKA-----LADALAREGL 299 (416)
T ss_dssp -HTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH------HHHHH-----HHHHHHTTTS
T ss_pred -HHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH------HHHHH-----HHHHHHhcCC
Confidence 24679999999985 211112 1222333332111123789999999996532 12222 3344443343
Q ss_pred cEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158 179 RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG 213 (225)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~ 213 (225)
.++ ..||.++.++++|++.|.+++.+...
T Consensus 300 ~vi------~iSA~~g~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 300 AVL------PVSALTGAGLPALKEALHALVRSTPP 328 (416)
T ss_dssp CEE------ECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred eEE------EEECCCccCHHHHHHHHHHHHHhccc
Confidence 332 34455668999999999999987654
No 160
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.65 E-value=1.3e-15 Score=132.99 Aligned_cols=166 Identities=19% Similarity=0.176 Sum_probs=99.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccc-------------cCCCCCceeEEEEEEEEeeC----CceEEEEeCCCCC
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKS-------------KAGSSGVTKTCEMQRTMLKD----GQVVNVIDTPGLF 80 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~-------------~~~~~~~t~~~~~~~~~~~~----~~~~~liDtPG~~ 80 (225)
...+|+++|+.|+|||||+++|+....... .....+.|.......+.|.. +..++||||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 458999999999999999999986321100 01123445555555555531 2579999999997
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHH
Q 036158 81 DSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDY 160 (225)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~ 160 (225)
++. ..+...+ ..+|++|+|+|+.++....+...+...... ..|+++++||+|.... ..++.
T Consensus 83 dF~-------~ev~~~l----~~aD~aILVVDa~~gv~~qt~~~~~~~~~~-----~ipiIvViNKiDl~~a---~~~~v 143 (599)
T 3cb4_D 83 DFS-------YEVSRSL----AACEGALLVVDAGQGVEAQTLANCYTAMEM-----DLEVVPVLNKIDLPAA---DPERV 143 (599)
T ss_dssp GGH-------HHHHHHH----HHCSEEEEEEETTTCCCTHHHHHHHHHHHT-----TCEEEEEEECTTSTTC---CHHHH
T ss_pred HHH-------HHHHHHH----HHCCEEEEEEECCCCCCHHHHHHHHHHHHC-----CCCEEEeeeccCcccc---cHHHH
Confidence 652 2333333 345999999999877776666655544431 3789999999998654 23333
Q ss_pred hhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158 161 LGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG 213 (225)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~ 213 (225)
.++ +.+ ..+.. .......|+.++.++++|++.|.+.++...+
T Consensus 144 ~~e-----i~~---~lg~~---~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~ 185 (599)
T 3cb4_D 144 AEE-----IED---IVGID---ATDAVRCSAKTGVGVQDVLERLVRDIPPPEG 185 (599)
T ss_dssp HHH-----HHH---HTCCC---CTTCEEECTTTCTTHHHHHHHHHHHSCCCCC
T ss_pred HHH-----HHH---HhCCC---cceEEEeecccCCCchhHHHHHhhcCCCccc
Confidence 222 222 22321 0123456777889999999999888776543
No 161
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.64 E-value=1e-15 Score=133.50 Aligned_cols=166 Identities=19% Similarity=0.211 Sum_probs=101.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcccccc-------------CCCCCceeEEEEEEEEee--C--CceEEEEeCCCC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSK-------------AGSSGVTKTCEMQRTMLK--D--GQVVNVIDTPGL 79 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~-------------~~~~~~t~~~~~~~~~~~--~--~~~~~liDtPG~ 79 (225)
....+|+++|+.|+|||||+++|+........ ....+.|.......+.|. + ...++||||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 34689999999999999999999753211000 011233443333344442 1 257899999999
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHH
Q 036158 80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLED 159 (225)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~ 159 (225)
.++. ..+... ...+|++|+|+|+.++....+...+...... ..|+++++||+|+... ..++
T Consensus 84 ~dF~-------~ev~r~----l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~-----~ipiIvviNKiDl~~a---~~~~ 144 (600)
T 2ywe_A 84 VDFS-------YEVSRA----LAACEGALLLIDASQGIEAQTVANFWKAVEQ-----DLVIIPVINKIDLPSA---DVDR 144 (600)
T ss_dssp GGGH-------HHHHHH----HHTCSEEEEEEETTTBCCHHHHHHHHHHHHT-----TCEEEEEEECTTSTTC---CHHH
T ss_pred HhHH-------HHHHHH----HHhCCEEEEEEECCCCccHHHHHHHHHHHHC-----CCCEEEEEeccCcccc---CHHH
Confidence 8652 223333 3456999999999877777766655544431 3789999999998654 2333
Q ss_pred HhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 160 YLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
..++ +.+..+.. .......|+.++.++++|++.|.+.++...
T Consensus 145 v~~e--------l~~~lg~~---~~~vi~vSAktg~GI~~Lle~I~~~lp~p~ 186 (600)
T 2ywe_A 145 VKKQ--------IEEVLGLD---PEEAILASAKEGIGIEEILEAIVNRIPPPK 186 (600)
T ss_dssp HHHH--------HHHTSCCC---GGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHHH--------HHHhhCCC---cccEEEEEeecCCCchHHHHHHHHhccccc
Confidence 3222 22223321 012455677888999999999988887654
No 162
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.64 E-value=3.3e-15 Score=112.85 Aligned_cols=166 Identities=18% Similarity=0.161 Sum_probs=93.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcc-ccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRA-FKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEI 93 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~ 93 (225)
...++|+++|.+|+|||||+|++.+... +... ...++.+.....+.+ ++. .+.+|||+|...... .+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~l~~~Dt~~~~~~~~-------~~ 73 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD--XEVLGEDTYERTLMV-DGESATIILLDMWENKGENE-------WL 73 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC------GGGCTTEEEEEEEE-TTEEEEEEEECCCCC----C-------TT
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc--ccccceeEEEEEEEE-CCeEEEEEEEEeccCcchhh-------hH
Confidence 3468999999999999999999986432 1111 112222222233455 454 567899999653100 01
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 172 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~ 172 (225)
...++..+|++++|++++++-+-.. ..++..+.+... ....|+++|.||+|+........++ .+.+
T Consensus 74 ---~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~r~v~~~~---------~~~~ 140 (192)
T 2cjw_A 74 ---HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRXREVSVSE---------GRAX 140 (192)
T ss_dssp ---GGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECTTCGGGCCSCHHH---------HHHH
T ss_pred ---HHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCeEEEEEechhhhccccccHHH---------HHHH
Confidence 1122335699999999974432222 223333443221 1247999999999976432111111 1222
Q ss_pred HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
....+..+ ...||.++.+++++++.+.+.+...
T Consensus 141 a~~~~~~~------~e~SA~~g~~v~~lf~~l~~~~~~~ 173 (192)
T 2cjw_A 141 AVVFDXKF------IETSAAVQHNVKELFEGIVRQVRLR 173 (192)
T ss_dssp HHHTTCEE------EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHhCCce------EEeccccCCCHHHHHHHHHHHHHhh
Confidence 22333322 2456777899999999998877544
No 163
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1e-15 Score=134.34 Aligned_cols=160 Identities=16% Similarity=0.166 Sum_probs=104.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccC-----------------------------CCCCceeEEEEEEEEee
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKA-----------------------------GSSGVTKTCEMQRTMLK 66 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~ 66 (225)
..+.++|+++|++|+|||||+|+|++........ ...+.|.......+.+
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~- 242 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST- 242 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-
Confidence 3567999999999999999999999764321100 0135676666666777
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhccccccc
Q 036158 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNR-------FSEEEGAAIHILESLFGKKISDY 139 (225)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~ 139 (225)
.+..+.||||||+.+ +...+......+|++|+|+|+..+ ......+.+..+.. ++ .++
T Consensus 243 ~~~~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lg---i~~ 307 (611)
T 3izq_1 243 HRANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LG---IHN 307 (611)
T ss_dssp SSCEEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TT---CCE
T ss_pred CCceEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cC---CCe
Confidence 788999999999864 234444567789999999999742 22334444444433 22 256
Q ss_pred EEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc---EEEeeCCCccccccHHHHHHH
Q 036158 140 MIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR---CVLFDNKTKDTAKRTEQVGKL 200 (225)
Q Consensus 140 ~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~l 200 (225)
+++|+||+|+........++...+ +..++..++.. ... .+.||.++.++.++
T Consensus 308 iIVVvNKiDl~~~~~~~~~ei~~~-----l~~~l~~~g~~~~~~~~----i~vSA~tG~gI~el 362 (611)
T 3izq_1 308 LIIAMNKMDNVDWSQQRFEEIKSK-----LLPYLVDIGFFEDNINW----VPISGFSGEGVYKI 362 (611)
T ss_dssp EEEEEECTTTTTTCHHHHHHHHHH-----HHHHHHHHTCCGGGCEE----EECCTTTCTTTSSC
T ss_pred EEEEEecccccchhHHHHHHHHHH-----HHHHHHhhcccccCccE----EeeecccCCCcccc
Confidence 999999999876443344544444 66667666642 222 23455566676643
No 164
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.64 E-value=3.9e-15 Score=129.07 Aligned_cols=119 Identities=16% Similarity=0.243 Sum_probs=87.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccc--------------------cccCCCCCceeEEEEEEEEeeCCceEEEEeC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAF--------------------KSKAGSSGVTKTCEMQRTMLKDGQVVNVIDT 76 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~--------------------~~~~~~~~~t~~~~~~~~~~~~~~~~~liDt 76 (225)
....+|+|+|+.++|||||..+|+..... .......+.|.......+.| ++..++||||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDT 107 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDT 107 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeC
Confidence 35689999999999999999998732211 01122345666667777888 8999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158 77 PGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED 152 (225)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~ 152 (225)
||+.|+. .++.+.+. -+|++|+|+|+.++....+...++...+. ..|.++++||+|....
T Consensus 108 PGHvDF~-------~Ev~raL~----~~DgAvlVvda~~GV~~qT~~v~~~a~~~-----~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 108 PGHQDFS-------EDTYRVLT----AVDSALVVIDAAKGVEAQTRKLMDVCRMR-----ATPVMTFVNKMDREAL 167 (548)
T ss_dssp CCGGGCS-------HHHHHHHH----SCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCCEEEEEECTTSCCC
T ss_pred CCcHHHH-------HHHHHHHH----hcCceEEEeecCCCcccccHHHHHHHHHh-----CCceEEEEecccchhc
Confidence 9999984 23333333 45999999999889999998888887764 3799999999997655
No 165
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.64 E-value=2.7e-17 Score=140.54 Aligned_cols=161 Identities=14% Similarity=0.170 Sum_probs=103.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI 97 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (225)
..++|+++|++++|||||+++|.+...... ..++.|.+...+.+.+ ++..++||||||+.++... +
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~--e~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f~~~-----------~ 68 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASG--EAGGITQHIGAYHVET-ENGMITFLDTPGHAAFTSM-----------R 68 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBT--TBCCCCCCSSCCCCCT-TSSCCCEECCCTTTCCTTS-----------B
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccc--cCCCeeEeEEEEEEEE-CCEEEEEEECCCcHHHHHH-----------H
Confidence 457899999999999999999987553211 2234555554455566 6778999999999876422 1
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158 98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
......+|++|+|+|++++......+.+..+... ..|+++++||+|+.......+...+.+ . .. +.+.++
T Consensus 69 ~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~-----~vPiIVviNKiDl~~~~~~~v~~~l~~-~-~~---~~~~~~ 138 (501)
T 1zo1_I 69 ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAA-----QVPVVVAVNKIDKPEADPDRVKNELSQ-Y-GI---LPEEWG 138 (501)
T ss_dssp CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHT-----TCCEEEEEECSSSSTTCCCCTTCCCCC-C-CC---CTTCCS
T ss_pred HHHHhhCCEEEEEeecccCccHHHHHHHHHHHhc-----CceEEEEEEeccccccCHHHHHHHHHH-h-hh---hHHHhC
Confidence 2345678999999999876666666666554432 378999999999865421122111111 0 00 011122
Q ss_pred CcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158 178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNS 206 (225)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~ 206 (225)
..+. ..+.|+.++.++++|++.|..
T Consensus 139 ~~~~----~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 139 GESQ----FVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp SSCE----EEECCTTTCTTCTTHHHHTTT
T ss_pred CCcc----EEEEeeeeccCcchhhhhhhh
Confidence 1122 234566778999999999854
No 166
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.64 E-value=3.6e-15 Score=123.04 Aligned_cols=174 Identities=12% Similarity=0.127 Sum_probs=96.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCC----CC----------------------ceeE-------------
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGS----SG----------------------VTKT------------- 57 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~----~~----------------------~t~~------------- 57 (225)
...++|+|+|.+|+|||||+|+|+|....+..... ++ +|..
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 34589999999999999999999998754222110 11 0000
Q ss_pred ----------EEEEEEEeeCCceEEEEeCCCCCCCCCC--cHHHHHHHHHHHhhcC-CCccEEEEEEeCCCCCCHHHHHH
Q 036158 58 ----------CEMQRTMLKDGQVVNVIDTPGLFDSSAD--SEFVSKEIVKCIGMTK-DGIHAVLVVFSVRNRFSEEEGAA 124 (225)
Q Consensus 58 ----------~~~~~~~~~~~~~~~liDtPG~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~ii~v~~~~~~~~~~~~~~ 124 (225)
.....+..+....++||||||+...... .....+.+...+..+. ...+++++|+++...+...+.
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~-- 186 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-- 186 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH--
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH--
Confidence 0011112223568999999999864321 1222223333333333 344667777787654544442
Q ss_pred HHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHH
Q 036158 125 IHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLV 204 (225)
Q Consensus 125 ~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i 204 (225)
+..+..... ...|+++|+||+|...... ...+...... ......+. .....|+..+.++++|++.+
T Consensus 187 ~~i~~~~~~--~~~~~i~V~NK~Dl~~~~~-~~~~~~~~~~--------~~l~~~~~---~v~~~SA~~~~~i~~l~~~l 252 (353)
T 2x2e_A 187 LKVAKEVDP--QGQRTIGVITKLDLMDEGT-DARDVLENKL--------LPLRRGYI---GVVNRSQKDIDGKKDITAAL 252 (353)
T ss_dssp HHHHHHHCT--TCTTEEEEEECGGGSCTTC-CCHHHHTTCS--------SCCTTCEE---ECCCCCHHHHHTTCCHHHHH
T ss_pred HHHHHHhCc--CCCceEEEeccccccCcch-hHHHHHhCCc--------ccccCCce---EEEeCCcccccccccHHHHH
Confidence 233333322 2479999999999875531 1222221100 00111222 23456777888888888888
Q ss_pred HH
Q 036158 205 NS 206 (225)
Q Consensus 205 ~~ 206 (225)
.+
T Consensus 253 ~~ 254 (353)
T 2x2e_A 253 AA 254 (353)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 167
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.63 E-value=4.5e-15 Score=120.95 Aligned_cols=168 Identities=15% Similarity=0.070 Sum_probs=102.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIV 94 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~ 94 (225)
...++|+++|.+|+|||||+|++.+...... ..+++.......+.. ++. .+.+|||||.....
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----------- 217 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGE---YIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYD----------- 217 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCS---CCCCSEEEEEEEEEE-TTEEEEEEEEEECCCGGGT-----------
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcc---cCCcccceeEEEEEE-CCEEEEEEEEeCCCchhhh-----------
Confidence 3458999999999999999999996654222 223333333333444 555 45599999976432
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh----cCCch
Q 036158 95 KCIGMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR----ECPKP 168 (225)
Q Consensus 95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~----~~~~~ 168 (225)
.....+...+|++++|+|+.++.+..+. .++..+..... ..|+++|+||+|+.... ...+.+... .....
T Consensus 218 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~ 293 (332)
T 2wkq_A 218 RLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQ 293 (332)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHTCH-HHHHHHHHTTCCCCCHHH
T ss_pred HHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhccccc-chhhhccccccccccHHH
Confidence 2233456788999999999754333222 23445544332 48999999999976542 111111110 01112
Q ss_pred HHHHHHHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 169 LKEILQLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
..++.+..+. .+ ...|+.++.+++++++.|.+.+.
T Consensus 294 ~~~~~~~~~~~~~------~~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 294 GLAMAKEIGAVKY------LECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp HHHHHHHTTCSEE------EECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEE------EEecCCCCcCHHHHHHHHHHHHh
Confidence 3344444443 22 23456677999999999987654
No 168
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.63 E-value=1.3e-14 Score=110.07 Aligned_cols=161 Identities=14% Similarity=0.149 Sum_probs=96.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKC 96 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (225)
.++|+|+|++|+|||||+|+|.+....... .+..+.......+.+ ++. .+.+|||||........
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~--~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~---------- 71 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRIT---------- 71 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCC----------
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEEEEE-CCEEEEEEEEECCCchhhhhhh----------
Confidence 589999999999999999999987642221 222223333444555 554 57789999975432111
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158 97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 175 (225)
Q Consensus 97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (225)
......++++++|+|..+..+... ..++..+.... ....|+++|+||+|+........++ .+.+...
T Consensus 72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~~~~~~~~~---------a~~l~~~ 139 (199)
T 2f9l_A 72 -SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRHLRAVPTDE---------ARAFAEK 139 (199)
T ss_dssp -HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred -HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECcccccccCcCHHH---------HHHHHHH
Confidence 122346799999999874332222 12233333321 1247899999999976432111111 3455555
Q ss_pred cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
.+.. .+. .|+..+.+++++++.|.+.+.+
T Consensus 140 ~~~~--~~d----~Sal~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 140 NNLS--FIE----TSALDSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp TTCE--EEE----CCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCe--EEE----EeCCCCCCHHHHHHHHHHHHHH
Confidence 5543 333 3555668899999888876654
No 169
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.63 E-value=7.2e-16 Score=137.25 Aligned_cols=124 Identities=18% Similarity=0.223 Sum_probs=78.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCc-------------eeEE-------------------------
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGV-------------TKTC------------------------- 58 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~-------------t~~~------------------------- 58 (225)
...++|+|+|.+|+|||||+|+|+|....++...+... |...
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 35689999999999999999999998865543322110 1100
Q ss_pred --------------EEEEEEeeCC---ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH
Q 036158 59 --------------EMQRTMLKDG---QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEE 121 (225)
Q Consensus 59 --------------~~~~~~~~~~---~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~ 121 (225)
....+.+|.. ..+.||||||+.+... ....+..+...+|++|+|+|++...+..+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~--------~~~~~~~~i~~aD~vL~Vvda~~~~s~~e 218 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA--------RNELSLGYVNNCHAILFVMRASQPCTLGE 218 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT--------CHHHHTHHHHSSSEEEEEEETTSTTCHHH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh--------HHHHHHHHHHhCCEEEEEEeCCCccchhH
Confidence 0001111100 3699999999874311 11222234456799999999987777777
Q ss_pred HHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158 122 GAAIHILESLFGKKISDYMIVVFTGGDELED 152 (225)
Q Consensus 122 ~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~ 152 (225)
...+... +.. ...|+++|+||+|....
T Consensus 219 ~~~l~~~---l~~-~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 219 RRYLENY---IKG-RGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp HHHHHHH---TTT-SCCCEEEEEECGGGGGG
T ss_pred HHHHHHH---HHh-hCCCEEEEEECcccccc
Confidence 6555321 111 23689999999997643
No 170
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.63 E-value=3.2e-15 Score=114.80 Aligned_cols=124 Identities=10% Similarity=0.165 Sum_probs=74.6
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
....++|+++|++|+|||||+|+|.+........ ....|... .+ ....+.+|||||+.... ..+..
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~-~~~~~~~~-----~~-~~~~~~l~Dt~G~~~~~-------~~~~~ 74 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV-SQEPLSAA-----DY-DGSGVTLVDFPGHVKLR-------YKLSD 74 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCC-CSSCEEET-----TG-GGSSCEEEECCCCGGGT-------HHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeee-ecCceEEE-----Ee-eCceEEEEECCCcHHHH-------HHHHH
Confidence 3567899999999999999999999776422111 11112211 11 45678999999986442 12222
Q ss_pred HHhhcCCCccEEEEEEeCC-C--CCCHHHHHHHHHHHHHhc-ccccccEEEEEecCCCCCCC
Q 036158 96 CIGMTKDGIHAVLVVFSVR-N--RFSEEEGAAIHILESLFG-KKISDYMIVVFTGGDELEDN 153 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~-~--~~~~~~~~~~~~l~~~~~-~~~~~~~~vv~~k~D~~~~~ 153 (225)
++......+|++|+|+|+. + .+......+.+.+...-. .....|+++|+||+|+....
T Consensus 75 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 75 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp HHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 3322223479999999987 2 333223222233222110 11247999999999987664
No 171
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.62 E-value=2.3e-15 Score=127.45 Aligned_cols=140 Identities=21% Similarity=0.304 Sum_probs=86.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCc-cccc----------------------------cCCCCCceeEEEEEEEEeeC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKR-AFKS----------------------------KAGSSGVTKTCEMQRTMLKD 67 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~-~~~~----------------------------~~~~~~~t~~~~~~~~~~~~ 67 (225)
.+.++|+++|+.|+|||||+|+|++.. .+.. .....+.|.......+.+ .
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-~ 82 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-K 82 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-S
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec-C
Confidence 467899999999999999999998642 1100 011345666666666777 7
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccccE
Q 036158 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNR-------FSEEEGAAIHILESLFGKKISDYM 140 (225)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~ 140 (225)
+..+.||||||+.++ ...+......+|++|+|+|+.+. ......+.+..+.. .+ .+++
T Consensus 83 ~~~~~iiDtpG~~~f-----------~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~---~~~i 147 (435)
T 1jny_A 83 KYFFTIIDAPGHRDF-----------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MG---LDQL 147 (435)
T ss_dssp SCEEEECCCSSSTTH-----------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TT---CTTC
T ss_pred CeEEEEEECCCcHHH-----------HHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cC---CCeE
Confidence 789999999998753 22233466789999999999754 22233344433333 11 1478
Q ss_pred EEEEecCCCCCCC--cccHHHHhhhcCCchHHHHHHHcC
Q 036158 141 IVVFTGGDELEDN--DETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 141 ~vv~~k~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
++++||+|+.... +..++....+ +++++...+
T Consensus 148 ivviNK~Dl~~~~~~~~~~~~~~~~-----i~~~~~~~~ 181 (435)
T 1jny_A 148 IVAVNKMDLTEPPYDEKRYKEIVDQ-----VSKFMRSYG 181 (435)
T ss_dssp EEEEECGGGSSSTTCHHHHHHHHHH-----HHHHHHHTT
T ss_pred EEEEEcccCCCccccHHHHHHHHHH-----HHHHHHHcC
Confidence 9999999987631 2233444444 677777766
No 172
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.62 E-value=1.1e-14 Score=133.51 Aligned_cols=167 Identities=19% Similarity=0.202 Sum_probs=105.9
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhCCcc------c------c--ccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCC
Q 036158 15 PSNGERNLVLVGRTGNGKSATANSILGKRA------F------K--SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80 (225)
Q Consensus 15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~------~------~--~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~ 80 (225)
...+.++|+++|++++|||||+++|++... + + ......+.|.......+.. .+..+.||||||+.
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-~~~kI~IIDTPGHe 370 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-PTRHYAHVDCPGHA 370 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC-SSCEEEEEECCCHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC-CCEEEEEEECCChH
Confidence 346679999999999999999999986410 0 0 0011234444443334444 66899999999965
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc-EEEEEecCCCCCCCcccHHH
Q 036158 81 DSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLED 159 (225)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~vv~~k~D~~~~~~~~~~~ 159 (225)
+ +...+......+|++|+|+|++++....+.+.+..+... ..| +++++||+|+.... ..++.
T Consensus 371 d-----------F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l-----gIP~IIVVINKiDLv~d~-e~le~ 433 (1289)
T 3avx_A 371 D-----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV-----GVPYIIVFLNKCDMVDDE-ELLEL 433 (1289)
T ss_dssp H-----------HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH-----TCSCEEEEEECCTTCCCH-HHHHH
T ss_pred H-----------HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc-----CCCeEEEEEeecccccch-hhHHH
Confidence 3 334444567789999999999877666676766655542 245 78999999986521 22333
Q ss_pred HhhhcCCchHHHHHHHcCC-----cEEEeeCCCccccccH--------HHHHHHHHHHHHHHHH
Q 036158 160 YLGRECPKPLKEILQLCDN-----RCVLFDNKTKDTAKRT--------EQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--------~~v~~l~~~i~~~~~~ 210 (225)
...+ ++++++..+. +++. .|+.++ .++.+|++.|.+.++.
T Consensus 434 i~eE-----i~elLk~~G~~~~~vp~Ip------vSAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 434 VEME-----VRELLSQYDFPGDDTPIVR------GSALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp HHHH-----HHHHHHHTTSCTTTCCEEE------CCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHH-----HHHHHHhccccccceeEEE------EEeccCCCCCccccccchhhHhHHhhhcCC
Confidence 3333 5667766652 2332 333333 5789999999876653
No 173
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.61 E-value=7.8e-15 Score=130.55 Aligned_cols=121 Identities=20% Similarity=0.246 Sum_probs=81.9
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhCCccccc----------------cCCCCCceeEEEEEEEEeeCCceEEEEeCCC
Q 036158 15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKS----------------KAGSSGVTKTCEMQRTMLKDGQVVNVIDTPG 78 (225)
Q Consensus 15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG 78 (225)
+.....+|+|+|++|+|||||+|+|+....... .....+.|.......+.+ .+..++||||||
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDTPG 86 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDTPG 86 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECCCS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEECcC
Confidence 345679999999999999999999983211000 000234555566666777 788999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158 79 LFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED 152 (225)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~ 152 (225)
+.++. ..+...+ ..+|++|+|+|+.+.....+...+..+... ..|+++++||+|....
T Consensus 87 ~~df~-------~~~~~~l----~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 87 HVDFT-------IEVERSM----RVLDGAIVVFDSSQGVEPQSETVWRQAEKY-----KVPRIAFANKMDKTGA 144 (691)
T ss_dssp STTCH-------HHHHHHH----HHCSEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCEEEEEECTTSTTC
T ss_pred ccchH-------HHHHHHH----HHCCEEEEEEECCCCcchhhHHHHHHHHHc-----CCCEEEEEECCCcccC
Confidence 97652 2223333 345999999999877777777766665542 3799999999998754
No 174
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.61 E-value=1.5e-15 Score=129.29 Aligned_cols=140 Identities=16% Similarity=0.226 Sum_probs=90.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCc-cccc-------------c---------------CCCCCceeEEEEEEEEeeC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKR-AFKS-------------K---------------AGSSGVTKTCEMQRTMLKD 67 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~-~~~~-------------~---------------~~~~~~t~~~~~~~~~~~~ 67 (225)
.+.++|+++|++|+|||||+|+|++.. .+.. + ....+.|.......+.. .
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~ 83 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-P 83 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-S
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-C
Confidence 456899999999999999999998642 1000 0 00134566655556666 6
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCH-------HHHHHHHHHHHHhcccccccE
Q 036158 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSE-------EEGAAIHILESLFGKKISDYM 140 (225)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~ 140 (225)
+..+.||||||+.++ ...+......+|++|+|+|+.++... .+.+.+..+.. .+ .+++
T Consensus 84 ~~~~~iiDtPGh~~f-----------~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~~---v~~i 148 (458)
T 1f60_A 84 KYQVTVIDAPGHRDF-----------IKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LG---VRQL 148 (458)
T ss_dssp SEEEEEEECCCCTTH-----------HHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TT---CCEE
T ss_pred CceEEEEECCCcHHH-----------HHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-cC---CCeE
Confidence 789999999997632 23334567789999999999744322 33333333332 11 1358
Q ss_pred EEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158 141 IVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 141 ~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
++|+||+|+....+..++....+ +++++...+
T Consensus 149 ivviNK~Dl~~~~~~~~~~i~~~-----~~~~l~~~g 180 (458)
T 1f60_A 149 IVAVNKMDSVKWDESRFQEIVKE-----TSNFIKKVG 180 (458)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHH-----HHHHHHHHT
T ss_pred EEEEEccccccCCHHHHHHHHHH-----HHHHHHHcC
Confidence 99999999874332344444444 666666665
No 175
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.59 E-value=1.7e-16 Score=138.81 Aligned_cols=169 Identities=16% Similarity=0.200 Sum_probs=88.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccc-----------------------------cCCCCCceeEEEEEEEEee
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKS-----------------------------KAGSSGVTKTCEMQRTMLK 66 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~ 66 (225)
..+.++|+++|++|+|||||+|+|++...... ....+++|.......+.+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~- 252 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES- 252 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-
Confidence 35678999999999999999999974321110 011345677777777777
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-----C--CHHHHHHHHHHHHHhccccccc
Q 036158 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNR-----F--SEEEGAAIHILESLFGKKISDY 139 (225)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~ 139 (225)
.+..+.||||||+.++.. .+......+|++|+|+|+..+ + .....+.+..+... + .++
T Consensus 253 ~~~~i~iiDTPGh~~f~~-----------~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l-g---ip~ 317 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFIS-----------GMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL-G---ISE 317 (592)
T ss_dssp ------CCEEESSSEEEE-----------ECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS-S---CCC
T ss_pred CCeEEEEEECCChHHHHH-----------HHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc-C---CCe
Confidence 678999999999876521 112234578999999999753 2 45555666555542 2 135
Q ss_pred EEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH-HHcCCc---EEEeeCCCccccccHHHHH--------------HHH
Q 036158 140 MIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL-QLCDNR---CVLFDNKTKDTAKRTEQVG--------------KLL 201 (225)
Q Consensus 140 ~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~v~--------------~l~ 201 (225)
+++|+||+|+.......++....+ +.+++ ...+.. +.+ .+.|+.++.++. .|+
T Consensus 318 iIvviNKiDl~~~~~~~~~~i~~e-----l~~~l~~~~g~~~~~~~i----i~iSA~~G~gI~e~~~~~~~~w~~g~~Ll 388 (592)
T 3mca_A 318 IVVSVNKLDLMSWSEDRFQEIKNI-----VSDFLIKMVGFKTSNVHF----VPISAISGTNLIQKDSSDLYKWYKGPTLL 388 (592)
T ss_dssp EEEEEECGGGGTTCHHHHHHHHHH-----HHHHHTTTSCCCGGGEEE----EEECSSSCSSSCSCCCCGGGGTCCSCCHH
T ss_pred EEEEEeccccccccHHHHHHHHHH-----HHHHHHHhhCCCccceEE----EEEecccCcccccccccccccccchHHHH
Confidence 899999999876433344444444 56666 444541 111 234555666766 788
Q ss_pred HHHHHHHH
Q 036158 202 SLVNSVIV 209 (225)
Q Consensus 202 ~~i~~~~~ 209 (225)
+.|..+..
T Consensus 389 e~l~~~~p 396 (592)
T 3mca_A 389 SALDQLVP 396 (592)
T ss_dssp HHHHTSCC
T ss_pred HHHHhhcc
Confidence 88876544
No 176
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.59 E-value=1.3e-14 Score=126.00 Aligned_cols=166 Identities=15% Similarity=0.161 Sum_probs=95.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEE----EEEee---CCceEEEEeCCCCCCCCCCcHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQ----RTMLK---DGQVVNVIDTPGLFDSSADSEF 88 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~----~~~~~---~~~~~~liDtPG~~~~~~~~~~ 88 (225)
....++|+++|.+|+|||||+|++++...........+.+...... .+... .+..+.+|||||..........
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 4567999999999999999999999876422111111111111000 11121 2468999999997655332221
Q ss_pred HHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCch
Q 036158 89 VSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKP 168 (225)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~ 168 (225)
....+|++|+|+|+.. . .....++..+.+... ..|+++|.||+|.........++
T Consensus 118 -----------~l~~~d~ii~V~D~s~-~-~~~~~~~~~l~~~~~---~~pvilV~NK~Dl~~~~~v~~~~--------- 172 (535)
T 3dpu_A 118 -----------FMTRSSVYMLLLDSRT-D-SNKHYWLRHIEKYGG---KSPVIVVMNKIDENPSYNIEQKK--------- 172 (535)
T ss_dssp -----------HHHSSEEEEEEECGGG-G-GGHHHHHHHHHHHSS---SCCEEEEECCTTTCTTCCCCHHH---------
T ss_pred -----------HccCCcEEEEEEeCCC-c-hhHHHHHHHHHHhCC---CCCEEEEEECCCcccccccCHHH---------
Confidence 1224799999999873 2 333455666665432 37999999999987543212211
Q ss_pred HHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 169 LKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
+++.....+.++ ...||.++.++++|++.|.+.+.+..
T Consensus 173 ~~~~~~~~~~~~------~~vSA~~g~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 173 INERFPAIENRF------HRISCKNGDGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp HHHHCGGGTTCE------EECCC-----CTTHHHHHHHHHTCTT
T ss_pred HHHHHHhcCCce------EEEecCcccCHHHHHHHHHHHHhccc
Confidence 333444444333 24466778999999999998887653
No 177
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.59 E-value=7.9e-14 Score=105.07 Aligned_cols=160 Identities=16% Similarity=0.147 Sum_probs=95.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
..++|+|+|++|+|||||+|.|.+...... ..+..+.......+.+ ++. .+.+|||||.........
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~--~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~-------- 96 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLE--SKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAITS-------- 96 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCS--CCCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCCCH--------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhhhH--------
Confidence 358999999999999999999998764322 2233333344445555 555 456799999865432111
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 174 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (225)
.....++++++|+|..+..+... ..++..+.... ....|+++++||+|+........+ ..+.+..
T Consensus 97 ---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~~~~~~~~---------~a~~l~~ 162 (191)
T 1oix_A 97 ---AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRHLRAVPTD---------EARAFAE 162 (191)
T ss_dssp ---HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCCSCHH---------HHHHHHH
T ss_pred ---HHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECcccccccccCHH---------HHHHHHH
Confidence 22346689999999863322111 12233333321 124789999999997543211111 1344555
Q ss_pred HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158 175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI 208 (225)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~ 208 (225)
..+. ..++ .|+..+.+++++++.|.+.+
T Consensus 163 ~~~~--~~ld----~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 163 KNGL--SFIE----TSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp HTTC--EEEE----CCTTTCTTHHHHHHHHHHHH
T ss_pred HcCC--EEEE----EeCCCCCCHHHHHHHHHHHh
Confidence 5443 3333 45566689999999887643
No 178
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.58 E-value=2.1e-14 Score=127.80 Aligned_cols=120 Identities=21% Similarity=0.284 Sum_probs=82.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccccc----------c------CCCCCceeEEEEEEEEeeCCceEEEEeCCCC
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKS----------K------AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~----------~------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (225)
.....+|+|+|++|+|||||+|+|++...... . ....+.|.......+.+ .+..++||||||+
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~ 85 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTPGH 85 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECcCC
Confidence 45678999999999999999999984221100 0 00234455555566777 7889999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158 80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED 152 (225)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~ 152 (225)
.++. ..+..++ ..+|++|+|+|+.++.+..+...+..+... ..|+++|+||+|....
T Consensus 86 ~df~-------~~~~~~l----~~aD~~llVvDa~~g~~~~~~~~~~~~~~~-----~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFT-------VEVERSL----RVLDGAVTVLDAQSGVEPQTETVWRQATTY-----GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCC-------HHHHHHH----HHCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCCEEEEEECTTSTTC
T ss_pred cchH-------HHHHHHH----HHCCEEEEEECCCCCCcHHHHHHHHHHHHc-----CCCEEEEEECCCcccc
Confidence 8753 1222232 236999999999877887777777666542 3799999999998764
No 179
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.58 E-value=2e-15 Score=131.01 Aligned_cols=140 Identities=17% Similarity=0.282 Sum_probs=80.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCcccc--ccCCCCCceeEEEEE--------------------------------
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFK--SKAGSSGVTKTCEMQ-------------------------------- 61 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~--~~~~~~~~t~~~~~~-------------------------------- 61 (225)
....++|+|+|.+|+|||||+|+|++..... ... .+.++......
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~-~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGP-EPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCS-SCCCCSEEEEECCSSSEEECCC------------------CCC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCC-CCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 3467899999999999999999999987531 211 22222211110
Q ss_pred ----EEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcc
Q 036158 62 ----RTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRN-RFSEEEGAAIHILESLFGK 134 (225)
Q Consensus 62 ----~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~-~~~~~~~~~~~~l~~~~~~ 134 (225)
.+.++.. ..+.||||||+.+...........+...+..+...+|++|+|+|+.. .....+..+++.+..
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---- 216 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---- 216 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----
Confidence 0111000 36899999999853211000000011222223346699999999975 356666666655543
Q ss_pred cccccEEEEEecCCCCCCCcccHHHHhhh
Q 036158 135 KISDYMIVVFTGGDELEDNDETLEDYLGR 163 (225)
Q Consensus 135 ~~~~~~~vv~~k~D~~~~~~~~~~~~~~~ 163 (225)
...|+++|+||+|..... .+.+....
T Consensus 217 -~~~pvilVlNK~Dl~~~~--el~~~~~~ 242 (550)
T 2qpt_A 217 -HEDKIRVVLNKADMVETQ--QLMRVYGA 242 (550)
T ss_dssp -CGGGEEEEEECGGGSCHH--HHHHHHHH
T ss_pred -cCCCEEEEEECCCccCHH--HHHHHHHH
Confidence 236899999999987542 44444333
No 180
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.58 E-value=1.3e-14 Score=125.23 Aligned_cols=119 Identities=15% Similarity=0.203 Sum_probs=80.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccc--------------------cCCCCCceeEEEEEEEEeeCCceEEEEeC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKS--------------------KAGSSGVTKTCEMQRTMLKDGQVVNVIDT 76 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~--------------------~~~~~~~t~~~~~~~~~~~~~~~~~liDt 76 (225)
....+|+++|++|+|||||+|+|++...... .....+.|.......+.+ .+..++||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDT 89 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDT 89 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEEC
Confidence 4568999999999999999999986421110 001223333334445666 7889999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158 77 PGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED 152 (225)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~ 152 (225)
||+.++. ..+. .+...+|++|+|+|+.++........+..+.. ...|+++++||+|....
T Consensus 90 PG~~df~-------~~~~----~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~-----~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 90 PGHEDFS-------EDTY----RTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL-----RDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CCSTTCC-------HHHH----HGGGGCSEEEEEEETTTCSCHHHHHHHHHHTT-----TTCCEEEEEECTTSCCS
T ss_pred CCChhHH-------HHHH----HHHHHCCEEEEEEeCCccchHHHHHHHHHHHH-----cCCCEEEEEcCcCCccc
Confidence 9998763 1122 24457799999999987776666555554432 13789999999998655
No 181
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.58 E-value=3.6e-15 Score=127.27 Aligned_cols=138 Identities=17% Similarity=0.178 Sum_probs=77.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcc-cc----------------------------ccCCCCCceeEEEEEEEEeeC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRA-FK----------------------------SKAGSSGVTKTCEMQRTMLKD 67 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~-~~----------------------------~~~~~~~~t~~~~~~~~~~~~ 67 (225)
.+.++|+++|+.++|||||+++|+.... +. ......+.|.......+.+ +
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~ 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-E 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-S
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-C
Confidence 4568999999999999999999974221 00 0001235566666556676 6
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCC-------HHHHHHHHHHHHHhccccccc-
Q 036158 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFS-------EEEGAAIHILESLFGKKISDY- 139 (225)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~- 139 (225)
+..+.||||||+.++. ..+......+|++|+|+|+.++.. ...++.+..+.. . ..|
T Consensus 120 ~~~~~iiDtPGh~~f~-----------~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~----~vp~ 183 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYV-----------TNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-Q----GINH 183 (467)
T ss_dssp SEEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-T----TCSS
T ss_pred CeEEEEEECCCcHHHH-----------HHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-c----CCCE
Confidence 7899999999987542 222334568899999999975421 233444443332 1 244
Q ss_pred EEEEEecCCCCCCC--cccHHHHhhhcCCchHHHHHHHc
Q 036158 140 MIVVFTGGDELEDN--DETLEDYLGRECPKPLKEILQLC 176 (225)
Q Consensus 140 ~~vv~~k~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 176 (225)
+++++||+|+.... ...++....+ +++++...
T Consensus 184 iivviNK~Dl~~~~~~~~~~~~i~~e-----~~~~l~~~ 217 (467)
T 1r5b_A 184 LVVVINKMDEPSVQWSEERYKECVDK-----LSMFLRRV 217 (467)
T ss_dssp EEEEEECTTSTTCSSCHHHHHHHHHH-----HHHHHHHH
T ss_pred EEEEEECccCCCccccHHHHHHHHHH-----HHHHHHHh
Confidence 99999999986422 2233444444 56666555
No 182
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.55 E-value=4.2e-14 Score=118.53 Aligned_cols=169 Identities=17% Similarity=0.253 Sum_probs=82.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCC----CCceeEEEEEEEEee-CC--ceEEEEeCCCCCCCCCCcHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGS----SGVTKTCEMQRTMLK-DG--QVVNVIDTPGLFDSSADSEFV 89 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~----~~~t~~~~~~~~~~~-~~--~~~~liDtPG~~~~~~~~~~~ 89 (225)
.-.++|+|+|++|+|||||+|.|+|.......... ...|.......+.+. .+ ..++++||||++..... ...
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~-~~~ 107 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN-SNC 107 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC------------
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccc-hhh
Confidence 44578999999999999999999987653222111 012222222222221 12 26899999999865321 111
Q ss_pred HHHHH----HHHh-----------hcC--CCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158 90 SKEIV----KCIG-----------MTK--DGIHAVLVVFSVR-NRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELE 151 (225)
Q Consensus 90 ~~~~~----~~~~-----------~~~--~~~~~ii~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~ 151 (225)
+..+. ..+. ... +.+|+++|++... ..++..+..+++.+.. ..++++|+||+|...
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~------~v~iIlVinK~Dll~ 181 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLT 181 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT------TSEEEEEEESTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc------cCcEEEEEEcccCcc
Confidence 11111 1111 112 3456677776654 4677777656655532 379999999999875
Q ss_pred CCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHH
Q 036158 152 DNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVN 205 (225)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~ 205 (225)
.. .+..+..+ +.+.+...+.+++.++ +....+++++...+.
T Consensus 182 ~~--ev~~~k~~-----i~~~~~~~~i~~~~~s------a~~~~~v~~~~~~l~ 222 (418)
T 2qag_C 182 PE--ECQQFKKQ-----IMKEIQEHKIKIYEFP------ETDDEEENKLVKKIK 222 (418)
T ss_dssp HH--HHHHHHHH-----HHHHHHHHTCCCCCCC---------------------
T ss_pred HH--HHHHHHHH-----HHHHHHHcCCeEEeCC------CCCCcCHHHHHHHHH
Confidence 43 45554444 6666667676654443 233455555554443
No 183
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.54 E-value=8.4e-14 Score=116.29 Aligned_cols=90 Identities=16% Similarity=0.087 Sum_probs=46.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee--------------------C---CceEEEEeC
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK--------------------D---GQVVNVIDT 76 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--------------------~---~~~~~liDt 76 (225)
++|+++|.+|+|||||+|+|++.. ... ...+++|.........+. + ...+.||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~-~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEI-ANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-Ccc-cCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 479999999999999999999887 222 234455554443322110 1 247999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCC
Q 036158 77 PGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRN 115 (225)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~ 115 (225)
||+........ .+..........+|++++|+|+.+
T Consensus 79 pG~~~~a~~~~----~l~~~~l~~i~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 79 AGLVPGAHEGR----GLGNKFLDDLRMASALIHVVDATG 113 (397)
T ss_dssp C-------------------CCCSSTTCSEEEEEEETTC
T ss_pred CCcccchhhhh----hHHHHHHHHHhcCCEEEEEEeccc
Confidence 99975422112 122222345678999999999964
No 184
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.54 E-value=1.1e-13 Score=123.34 Aligned_cols=120 Identities=19% Similarity=0.261 Sum_probs=82.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCcccccc----------------CCCCCceeEEEEEEEEeeCC-------ceEE
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSK----------------AGSSGVTKTCEMQRTMLKDG-------QVVN 72 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~-------~~~~ 72 (225)
.....+|+|+|+.|+|||||+++|+........ ....+.|.......+.+ .+ ..++
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRIN 85 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEE
Confidence 456789999999999999999999753210000 00234566555566666 44 7899
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158 73 VIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED 152 (225)
Q Consensus 73 liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~ 152 (225)
||||||+.++. ..+.. +...+|++|+|+|+.+.........+..+... ..|+++++||+|....
T Consensus 86 liDTPG~~df~-------~~~~~----~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~-----~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 86 IIDTPGHVDFT-------IEVER----SMRVLDGAVMVYCAVGGVQPQSETVWRQANKY-----KVPRIAFVNKMDRMGA 149 (704)
T ss_pred EEeCCCccchH-------HHHHH----HHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHc-----CCCEEEEEeCCCcccc
Confidence 99999998652 12222 33456999999999877666666666554432 3789999999997654
No 185
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.54 E-value=1.2e-13 Score=122.59 Aligned_cols=117 Identities=26% Similarity=0.299 Sum_probs=83.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCC----------------CCCceeEEEEEEEEeeCCceEEEEeCCCCC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAG----------------SSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~ 80 (225)
....+|+++|++|+|||||+++|++......... ..+.|...+...+.+ .+..++||||||+.
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYG 85 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEeCCCcc
Confidence 4568999999999999999999984332100000 123455555566666 77899999999987
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 036158 81 DSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDEL 150 (225)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~ 150 (225)
++. ..+...+ ..+|++++|+|+.+.+.......+..+... ..|+++++||+|..
T Consensus 86 ~f~-------~~~~~~l----~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~-----~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFV-------GEIRGAL----EAADAALVAVSAEAGVQVGTERAWTVAERL-----GLPRMVVVTKLDKG 139 (665)
T ss_dssp GGH-------HHHHHHH----HHCSEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCEEEEEECGGGC
T ss_pred chH-------HHHHHHH----hhcCcEEEEEcCCcccchhHHHHHHHHHHc-----cCCEEEEecCCchh
Confidence 541 2233333 345999999999878888777777766652 37899999999986
No 186
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.53 E-value=5.2e-14 Score=113.82 Aligned_cols=121 Identities=15% Similarity=0.116 Sum_probs=75.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT 100 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (225)
+|+++|.+|+||||+++.+.+...... ......|.......+ .....+.||||||...+..+. + ....+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~-~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~--l------~~~~y 69 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLD-TLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPS--Y------DSERL 69 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGG-GTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCS--H------HHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCc-cceecCeeeeeeEEE--ccEEEEEEEECCCchhccchh--h------hhhhh
Confidence 589999999999999998876532111 112233333333332 234689999999998763211 0 01234
Q ss_pred CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158 101 KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED 152 (225)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~ 152 (225)
+++++++|+|+|+++++.....++.+++.+........|++++.||+|+...
T Consensus 70 yr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 70 FKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp HTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred ccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence 6688999999999866333333333344432222234799999999998754
No 187
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.50 E-value=1.2e-13 Score=115.56 Aligned_cols=152 Identities=16% Similarity=0.218 Sum_probs=86.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCccccccCC--CCCceeEEEEEEEEeeCC---ceEEEEeCCCCCCCCCCcHH----
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAG--SSGVTKTCEMQRTMLKDG---QVVNVIDTPGLFDSSADSEF---- 88 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~---~~~~liDtPG~~~~~~~~~~---- 88 (225)
..++++|+|++|+|||||+|.|+|......... .++.+.. ...+.+... ..++++|+||++... ....
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~--~i~~v~Q~~~l~~~ltv~D~~~~g~~~-~~~~~~~~ 117 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ--SNTYDLQESNVRLKLTIVSTVGFGDQI-NKEDSYKP 117 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE--EEEEEEEC--CEEEEEEEEEECCCC-C-CHHHHSHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe--eEEEEeecCccccccchhhhhhhhhcc-ccchhhhH
Confidence 345699999999999999999999864322111 1222322 222222122 278999999998642 2211
Q ss_pred ----HHHHHHHHHhhc-----------CCCccE-EEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158 89 ----VSKEIVKCIGMT-----------KDGIHA-VLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED 152 (225)
Q Consensus 89 ----~~~~~~~~~~~~-----------~~~~~~-ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~ 152 (225)
+...+..++... ...+|+ ++|+.|...+++..+.++++.|.. ..|+++|+||+|.+.+
T Consensus 118 i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~~------~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 118 IVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDS------KVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTCS------CSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHhh------CCCEEEEEcchhccch
Confidence 112222222221 112455 556667777888888777766642 3799999999998865
Q ss_pred CcccHHHHhhhcCCchHHHHHHHcCCcEEEeeC
Q 036158 153 NDETLEDYLGRECPKPLKEILQLCDNRCVLFDN 185 (225)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (225)
. ....+... +++.+...|..++.|+.
T Consensus 192 ~--E~~~l~~~-----I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 192 S--ELTKFKIK-----ITSELVSNGVQIYQFPT 217 (427)
T ss_dssp H--HHHHHHHH-----HHHHHBTTBCCCCCCC-
T ss_pred H--HHHHHHHH-----HHHHHHHcCCcEEecCC
Confidence 3 55555554 56556666666666653
No 188
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.50 E-value=3.9e-13 Score=108.43 Aligned_cols=174 Identities=16% Similarity=0.152 Sum_probs=80.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCC-----CCceeEEEEEEEEee---CCceEEEEeCCCCCCCCCC---
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGS-----SGVTKTCEMQRTMLK---DGQVVNVIDTPGLFDSSAD--- 85 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~-----~~~t~~~~~~~~~~~---~~~~~~liDtPG~~~~~~~--- 85 (225)
.-.++|+|+|++|+|||||+|+|++...++..... ...|.......+... ....+.+|||||+++....
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 44589999999999999999999987433322100 011221222222221 1247899999999643211
Q ss_pred cHHHHHHH----HHHHhh---------cCCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158 86 SEFVSKEI----VKCIGM---------TKDGIHAVLVVFSVRN-RFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELE 151 (225)
Q Consensus 86 ~~~~~~~~----~~~~~~---------~~~~~~~ii~v~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~ 151 (225)
...+...+ ...+.. ....+++++|+.+... .++..+.+++ +... . ..++++|+||.|...
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l---~~l~-~--~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFM---KAIH-N--KVNIVPVIAKADTLT 169 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHH---HHHT-T--TSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHH---HHHH-h--cCCEEEEEEeCCCCC
Confidence 01112111 111111 1123566777666432 4777664433 3332 2 268999999999865
Q ss_pred CCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 152 DNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
.. ......++ ..+.++..+..+ ...|+.++ ++++++..+.+.+.+
T Consensus 170 ~~--e~~~~~~~-----~~~~~~~~~~~~------~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 170 LK--ERERLKKR-----ILDEIEEHNIKI------YHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HH--HHHHHHHH-----HHHHHHHTTCCC------CCCC----------CHHHHHHHHT
T ss_pred HH--HHHHHHHH-----HHHHHHHcCCeE------EecCCccc-cccHHHHHHHHHhhc
Confidence 32 23323233 455666655432 34456677 889988888776654
No 189
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.49 E-value=1.8e-14 Score=127.16 Aligned_cols=118 Identities=18% Similarity=0.249 Sum_probs=88.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccC----------------CCCCceeEEEEEEEEeeCCceEEEEeCCCCCCC
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKA----------------GSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDS 82 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~ 82 (225)
..||+|+|+.++|||||..+|+......... ...+.|.......+.| ++..++||||||+.|+
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECCCSSST
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECCCcHHH
Confidence 4689999999999999999987332111100 0124566666677788 8889999999999988
Q ss_pred CCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158 83 SADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN 153 (225)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~ 153 (225)
. .++.+. ..-+|++|+|+|+.++....+...++.+.+. ..|.++++||+|....+
T Consensus 81 ~-------~Ev~ra----L~~~DgavlVVDa~~GV~~qT~~v~~~a~~~-----~lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 81 L-------AEVYRS----LSVLDGAILLISAKDGVQAQTRILFHALRKM-----GIPTIFFINKIDQNGID 135 (638)
T ss_dssp H-------HHHHHH----HTTCSEEECCEESSCTTCSHHHHHHHHHHHH-----TCSCEECCEECCSSSCC
T ss_pred H-------HHHHHH----HHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc-----CCCeEEEEeccccccCC
Confidence 3 233333 3456999999999889988888888887775 36889999999987554
No 190
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.45 E-value=1.7e-13 Score=108.86 Aligned_cols=152 Identities=18% Similarity=0.242 Sum_probs=89.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCC-----CCceeEEEEEEEEeeC---CceEEEEeCCCCCCCCCCc---H
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGS-----SGVTKTCEMQRTMLKD---GQVVNVIDTPGLFDSSADS---E 87 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~-----~~~t~~~~~~~~~~~~---~~~~~liDtPG~~~~~~~~---~ 87 (225)
.++++|+|++|+|||||+|.|+|......+... ...+.......+.... ...++++|+||++...... .
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 378999999999999999999986543222110 0111111111221111 1278999999998643221 1
Q ss_pred HHHHH----HHHHHhh----------cCCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158 88 FVSKE----IVKCIGM----------TKDGIHAVLVVFSV-RNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED 152 (225)
Q Consensus 88 ~~~~~----~~~~~~~----------~~~~~~~ii~v~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~ 152 (225)
.+... +...... ..-.+++.++++|. +.+++..+.++++.+.+. .++++|++|+|.+..
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCCH
Confidence 11111 1111111 12346888888875 468898888777777652 799999999998865
Q ss_pred CcccHHHHhhhcCCchHHHHHHHcCCcEEEe
Q 036158 153 NDETLEDYLGRECPKPLKEILQLCDNRCVLF 183 (225)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (225)
. ....+... +++.+...+..++.+
T Consensus 156 ~--e~~~~k~~-----i~~~l~~~~i~i~~~ 179 (270)
T 3sop_A 156 E--EKSEFKQR-----VRKELEVNGIEFYPQ 179 (270)
T ss_dssp H--HHHHHHHH-----HHHHHHHTTCCCSSC
T ss_pred H--HHHHHHHH-----HHHHHHHcCccccCC
Confidence 3 55555555 677777777765543
No 191
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.45 E-value=8.7e-13 Score=117.88 Aligned_cols=129 Identities=22% Similarity=0.246 Sum_probs=89.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCcccc----------------ccCCCCCceeEEEEEEEEeeC------CceEEE
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAFK----------------SKAGSSGVTKTCEMQRTMLKD------GQVVNV 73 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~----------------~~~~~~~~t~~~~~~~~~~~~------~~~~~l 73 (225)
.....+|+|+|+.++|||||..+|+...... ......+.|.......+.|.. +..++|
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl 89 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV 89 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence 3556899999999999999999887332110 011234566666666777732 468999
Q ss_pred EeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158 74 IDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN 153 (225)
Q Consensus 74 iDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~ 153 (225)
|||||+.|+. .++.+++..+ |++|+|+|+..+....+...++...+. ..|.++++||+|....
T Consensus 90 IDTPGHvDF~-------~Ev~~aLr~~----DgavlvVDaveGV~~qT~~v~~~a~~~-----~lp~i~~iNKiDr~~a- 152 (709)
T 4fn5_A 90 IDTPGHVDFT-------IEVERSLRVL----DGAVVVFCGTSGVEPQSETVWRQANKY-----GVPRIVYVNKMDRQGA- 152 (709)
T ss_dssp ECCCSCTTCH-------HHHHHHHHHC----SEEEEEEETTTCSCHHHHHHHHHHHHH-----TCCEEEEEECSSSTTC-
T ss_pred EeCCCCcccH-------HHHHHHHHHh----CeEEEEEECCCCCchhHHHHHHHHHHc-----CCCeEEEEccccccCc-
Confidence 9999999983 3444444444 999999999889999888888877664 3799999999998655
Q ss_pred cccHHHHhhh
Q 036158 154 DETLEDYLGR 163 (225)
Q Consensus 154 ~~~~~~~~~~ 163 (225)
.+....++
T Consensus 153 --~~~~~~~e 160 (709)
T 4fn5_A 153 --NFLRVVEQ 160 (709)
T ss_dssp --CHHHHHHH
T ss_pred --cHHHHHHH
Confidence 44544444
No 192
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.44 E-value=1.6e-13 Score=108.23 Aligned_cols=89 Identities=15% Similarity=0.100 Sum_probs=52.2
Q ss_pred CccEEEEEEeCCCC--CCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc-CC
Q 036158 103 GIHAVLVVFSVRNR--FSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC-DN 178 (225)
Q Consensus 103 ~~~~ii~v~~~~~~--~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 178 (225)
++|++|+|+|++++ .+-.. ..++..+.+... ....|+++|.||+|+.... .+ .+ .+++.... +.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~-~~~~piilV~NK~Dl~~~~--~v----~~-----~~~~~~~~~~~ 229 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLA-KTKKPIVVVLTKCDEGVER--YI----RD-----AHTFALSKKNL 229 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHH-HTTCCEEEEEECGGGBCHH--HH----HH-----HHHHHHTSSSC
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhc-cCCCCEEEEEEcccccccH--HH----HH-----HHHHHHhcCCC
Confidence 58999999999754 34333 223334433211 1247999999999975321 12 12 33333321 22
Q ss_pred cEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 179 RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
.+ ...||.++.+++++++.|.+.+.
T Consensus 230 ~~------~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 230 QV------VETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp CE------EECBTTTTBSHHHHHHHHHHHHH
T ss_pred eE------EEEECCCCCCHHHHHHHHHHHhc
Confidence 22 23566777899999999977653
No 193
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.42 E-value=1e-13 Score=114.41 Aligned_cols=114 Identities=17% Similarity=0.079 Sum_probs=66.2
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 036158 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTG 146 (225)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k 146 (225)
.+..++||||||+... ... ....+|++++|++....... +.+ ... -...|.++|+||
T Consensus 170 ~~~~~iiiDTpGi~~~-------~~~-------~~~~aD~vl~V~d~~~~~~~---~~l---~~~---~~~~p~ivVlNK 226 (355)
T 3p32_A 170 AGFDVILIETVGVGQS-------EVA-------VANMVDTFVLLTLARTGDQL---QGI---KKG---VLELADIVVVNK 226 (355)
T ss_dssp TTCCEEEEEECSCSSH-------HHH-------HHTTCSEEEEEEESSTTCTT---TTC---CTT---SGGGCSEEEEEC
T ss_pred CCCCEEEEeCCCCCcH-------HHH-------HHHhCCEEEEEECCCCCccH---HHH---HHh---HhhcCCEEEEEC
Confidence 4568999999997632 111 12577999999997632111 111 110 122689999999
Q ss_pred CCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEe-eCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 147 GDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLF-DNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 147 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
+|..... .......+ +.+.+...+.....+ ......|+.++.++++|++.|.+++.+
T Consensus 227 ~Dl~~~~--~~~~~~~~-----l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 227 ADGEHHK--EARLAARE-----LSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp CCGGGHH--HHHHHHHH-----HHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred CCCcChh--HHHHHHHH-----HHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 9975432 33333333 444443332100000 112345677889999999999998876
No 194
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.40 E-value=5e-13 Score=109.81 Aligned_cols=90 Identities=17% Similarity=0.135 Sum_probs=57.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC----------------ceEEEEeCCCCCCCC
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG----------------QVVNVIDTPGLFDSS 83 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~liDtPG~~~~~ 83 (225)
++|+++|.+|+|||||+|+|++... .. ...+++|..+....+.+++. ..+.||||||+....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~-~v-~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGI-EA-ANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-cc-cCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 6899999999999999999998763 22 23445555554444555221 479999999998642
Q ss_pred CCcHHHHHHHHHHHhhcCCCccEEEEEEeCCC
Q 036158 84 ADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRN 115 (225)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~ 115 (225)
...+.+...+.. ....+|++++|+|+.+
T Consensus 81 ~~~~gl~~~fl~----~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKGEGLGNKFLA----NIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHGGGTCCHHH----HHHTCSEEEEEEECSC
T ss_pred cccchHHHHHHH----HHHhcCeEEEEEecCC
Confidence 111112222222 2346799999999863
No 195
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.40 E-value=1.5e-12 Score=107.43 Aligned_cols=90 Identities=20% Similarity=0.179 Sum_probs=58.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee--------------------CCceEEEEeCCCC
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK--------------------DGQVVNVIDTPGL 79 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--------------------~~~~~~liDtPG~ 79 (225)
++|+++|.+|+|||||+|+|++... .. ...+.+|..+......++ ....+.+|||||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~-~v-~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANA-LA-ANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHT-TC-SSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-cc-cCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 5799999999999999999997652 11 223334444333333331 1346999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCC
Q 036158 80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRN 115 (225)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~ 115 (225)
.......+.+...+...+ ..+|++++|+|+.+
T Consensus 80 ~~~a~~~~~lg~~fl~~i----r~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHI----REVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHHH----HTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHHH----HhCCEEEEEEECCC
Confidence 876543333334444333 35699999999863
No 196
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.40 E-value=7.8e-13 Score=120.03 Aligned_cols=118 Identities=20% Similarity=0.274 Sum_probs=78.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccC--------------CCCCceeEEEEEEEEee---------------C
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKA--------------GSSGVTKTCEMQRTMLK---------------D 67 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~--------------~~~~~t~~~~~~~~~~~---------------~ 67 (225)
....+|+|+|+.|+|||||+|+|++........ ...+.|.......+.+. .
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 346799999999999999999998653211110 11233433333344442 1
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 036158 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGG 147 (225)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~ 147 (225)
+..++||||||+.++.. .+.. +...+|++|+|+|+.++.+..+...+..+.. . ..|+++++||+
T Consensus 97 ~~~i~liDTPG~~df~~-------~~~~----~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~---~--~~p~ilviNK~ 160 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSS-------EVTA----ALRVTDGALVVVDTIEGVCVQTETVLRQALG---E--RIKPVVVINKV 160 (842)
T ss_dssp EEEEEEECCCCCCSSCH-------HHHH----HHHTCSEEEEEEETTTBSCHHHHHHHHHHHH---T--TCEEEEEEECH
T ss_pred CceEEEEECcCchhhHH-------HHHH----HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH---c--CCCeEEEEECC
Confidence 56899999999987641 2222 2346699999999987777777665554432 1 37899999999
Q ss_pred CCC
Q 036158 148 DEL 150 (225)
Q Consensus 148 D~~ 150 (225)
|..
T Consensus 161 D~~ 163 (842)
T 1n0u_A 161 DRA 163 (842)
T ss_dssp HHH
T ss_pred Ccc
Confidence 976
No 197
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.38 E-value=4.9e-13 Score=109.97 Aligned_cols=114 Identities=15% Similarity=0.102 Sum_probs=58.6
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 036158 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTG 146 (225)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k 146 (225)
.+..+.|+||||+.+. . ..+ ...+|++++|+|+.... +.+.+.. ..+ ..|.++|+||
T Consensus 165 ~~~~~iliDT~Gi~~~----~---~~l-------~~~~d~vl~V~d~~~~~---~~~~i~~--~il----~~~~ivVlNK 221 (349)
T 2www_A 165 AGYDIILIETVGVGQS----E---FAV-------ADMVDMFVLLLPPAGGD---ELQGIKR--GII----EMADLVAVTK 221 (349)
T ss_dssp TTCSEEEEECCCC--C----H---HHH-------HTTCSEEEEEECCC-----------------C----CSCSEEEECC
T ss_pred CCCCEEEEECCCcchh----h---hhH-------HhhCCEEEEEEcCCcch---hHHHhHH--HHH----hcCCEEEEee
Confidence 5668999999998633 1 111 23679999999986331 1111111 111 2578999999
Q ss_pred CCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEE-eeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 147 GDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVL-FDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 147 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
+|..... ........ +...++........ .......|+.++.++++|++.|.++..+
T Consensus 222 ~Dl~~~~--~~~~~~~~-----l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 222 SDGDLIV--PARRIQAE-----YVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp CSGGGHH--HHHHHHHH-----HHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ecCCCch--hHHHHHHH-----HHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 9975321 11111111 22222111100000 0011235677789999999999988754
No 198
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.30 E-value=1.1e-11 Score=101.69 Aligned_cols=111 Identities=11% Similarity=0.076 Sum_probs=63.0
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 036158 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTG 146 (225)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k 146 (225)
.+..++|+||||+.+.. ..+ ...+|++++|+++.... ..+.+.. .. ...|.++|+||
T Consensus 147 ~~~~i~liDTpG~~~~~-------~~~-------~~~aD~vl~Vvd~~~~~---~~~~l~~--~~----~~~p~ivv~NK 203 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSE-------TEV-------ARMVDCFISLQIAGGGD---DLQGIKK--GL----MEVADLIVINK 203 (341)
T ss_dssp TTCSEEEEEEECCTTHH-------HHH-------HTTCSEEEEEECC---------CCCCH--HH----HHHCSEEEECC
T ss_pred cCCCEEEEeCCCccchH-------HHH-------HHhCCEEEEEEeCCccH---HHHHHHH--hh----hcccCEEEEEC
Confidence 46789999999987431 111 25789999999986321 1111110 00 12578999999
Q ss_pred CCCCCCCcccHHHHhhhcCCchHHHHHHHcCC---cEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 147 GDELEDNDETLEDYLGRECPKPLKEILQLCDN---RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 147 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
+|..... .+.....+ +++.+...+. .+ +....+.|+.++.++++|++.|.+...
T Consensus 204 ~Dl~~~~--~~~~~~~~-----l~~~l~~~~~~~~~~--~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 204 DDGDNHT--NVAIARHM-----YESALHILRRKYDEW--QPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CCTTCHH--HHHHHHHH-----HHHHHHHSCCSBTTB--CCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred CCCCChH--HHHHHHHH-----HHHHHHhccccccCC--CCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 9976431 23332223 3333333221 00 011234567778999999999988765
No 199
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.29 E-value=2e-11 Score=96.22 Aligned_cols=188 Identities=13% Similarity=0.067 Sum_probs=96.0
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHHh-----CCccccccCCCCCceeE----------EEEEEE--------------
Q 036158 13 TSPSNGERNLVLVGRTGNGKSATANSIL-----GKRAFKSKAGSSGVTKT----------CEMQRT-------------- 63 (225)
Q Consensus 13 ~~~~~~~~~i~v~G~~g~GKSSlin~l~-----~~~~~~~~~~~~~~t~~----------~~~~~~-------------- 63 (225)
.........+++.|+.|+||||+++.|. |.++......+...... ......
T Consensus 8 ~~~~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (262)
T 1yrb_A 8 HHHGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVES 87 (262)
T ss_dssp CCTTCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHH
T ss_pred ccCCcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEec
Confidence 3445566889999999999999999997 65543222111110000 000000
Q ss_pred ----------------EeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHH-HHH
Q 036158 64 ----------------MLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGA-AIH 126 (225)
Q Consensus 64 ----------------~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~-~~~ 126 (225)
.+..+..++||||||..+.. ....+...+...... +++++|+|+....+..+.. ...
T Consensus 88 ~~~~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~-----~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~ 161 (262)
T 1yrb_A 88 YDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETF-----LFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRF 161 (262)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHH-----HHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHhhcCCEEEEeCCCccchh-----hhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHH
Confidence 00012379999999975321 000111111123345 8999999886444443322 111
Q ss_pred HHHHHhcccccccEEEEEecCCCCCCCc-ccHHHHhhhcCCchHHH-----------------HHHHcCCcEEEeeCCCc
Q 036158 127 ILESLFGKKISDYMIVVFTGGDELEDND-ETLEDYLGRECPKPLKE-----------------ILQLCDNRCVLFDNKTK 188 (225)
Q Consensus 127 ~l~~~~~~~~~~~~~vv~~k~D~~~~~~-~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~ 188 (225)
...... .....|+++|+||+|...... ..+.+++.+ ....... .++..+.. ....+
T Consensus 162 ~~~~~~-~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~-~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~ 235 (262)
T 1yrb_A 162 FALLID-LRLGATTIPALNKVDLLSEEEKERHRKYFED-IDYLTARLKLDPSMQGLMAYKMCSMMTEVLPP----VRVLY 235 (262)
T ss_dssp HHHHHH-HHHTSCEEEEECCGGGCCHHHHHHHHHHHHC-HHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCC----CCCEE
T ss_pred HHHHHh-cccCCCeEEEEecccccccccHHHHHHHHhC-hHHHHHHHhccccccchhHhHHHHHHHHhcCc----ccceE
Confidence 111111 112378999999999764320 011222111 0000111 12332221 12334
Q ss_pred cccccHHHHHHHHHHHHHHHHHcC
Q 036158 189 DTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 189 ~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
.|+.++.++++|++.|.+.++...
T Consensus 236 ~SA~~~~gi~~l~~~i~~~~~~~~ 259 (262)
T 1yrb_A 236 LSAKTREGFEDLETLAYEHYCTCG 259 (262)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred EEecCcccHHHHHHHHHHHhcccc
Confidence 567778999999999998887653
No 200
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.26 E-value=3.1e-13 Score=111.92 Aligned_cols=125 Identities=17% Similarity=0.192 Sum_probs=72.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAF-----KSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI 93 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~-----~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (225)
..+|+++|.+|+|||||+|+|++.... ......+++|+...... + +..+.++||||+.+.....+.+..+.
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~--~--~~~~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP--L--DEESSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE--S--SSSCEEEECCCBCCTTSGGGGSCHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE--e--cCCeEEEeCCCcCcHHHHHHHhhHHH
Confidence 468999999999999999999986321 11233456665554433 3 23389999999987642222222222
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN 153 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~ 153 (225)
...+ .....++.++++++....+.......++.+. ....|+++++||.|.+...
T Consensus 236 l~~~-~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~-----~~~~~~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 236 LKLI-TPTKEIKPMVFQLNEEQTLFFSGLARFDYVS-----GGRRAFTCHFSNRLTIHRT 289 (368)
T ss_dssp HHHH-SCSSCCCCEEEEECTTEEEEETTTEEEEEEE-----SSSEEEEEEECTTSCEEEE
T ss_pred HHHh-ccccccCceEEEEcCCCEEEEcceEEEEEec-----CCCceEEEEecCccccccc
Confidence 2221 1235778899998874221111111122222 1236899999999987653
No 201
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.22 E-value=8.5e-11 Score=100.59 Aligned_cols=164 Identities=12% Similarity=0.106 Sum_probs=92.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHh------CCccccccCCCCCcee-----------EEEEEE-----------------
Q 036158 17 NGERNLVLVGRTGNGKSATANSIL------GKRAFKSKAGSSGVTK-----------TCEMQR----------------- 62 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~------~~~~~~~~~~~~~~t~-----------~~~~~~----------------- 62 (225)
.+..+|+++|.+|+||||+++.|. |.++............ ....+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 446789999999999999999998 6654322211100000 000111
Q ss_pred EEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc-EE
Q 036158 63 TMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDY-MI 141 (225)
Q Consensus 63 ~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~ 141 (225)
+.+ .+..++||||||.... ...+..++...... ..+|.+++|+|+....+ .....+.+.+. .| ..
T Consensus 179 ~~~-~~~DvvIIDTpG~~~~---~~~l~~el~~~~~~--i~pd~vllVvDa~~g~~--~~~~a~~~~~~------~~i~g 244 (504)
T 2j37_W 179 FKN-ENFEIIIVDTSGRHKQ---EDSLFEEMLQVANA--IQPDNIVYVMDASIGQA--CEAQAKAFKDK------VDVAS 244 (504)
T ss_dssp HHH-TTCCEEEEEECCCCTT---CHHHHHHHHHHHHH--HCCSEEEEEEETTCCTT--HHHHHHHHHHH------HCCCC
T ss_pred HHH-CCCcEEEEeCCCCccc---chhHHHHHHHHHhh--hcCceEEEEEecccccc--HHHHHHHHHhh------cCceE
Confidence 011 4568999999998742 23344444333321 16799999999975433 23333333331 45 48
Q ss_pred EEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEee------------CCCccccccHHH-HHHHHHHHHHH
Q 036158 142 VVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFD------------NKTKDTAKRTEQ-VGKLLSLVNSV 207 (225)
Q Consensus 142 vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~-v~~l~~~i~~~ 207 (225)
+|+||+|....... ..++...++.++.++. .....++..+.+ +.+|++++.+.
T Consensus 245 vVlNK~D~~~~~g~-------------~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 245 VIVTKLDGHAKGGG-------------ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp EEEECTTSCCCCTH-------------HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred EEEeCCccccchHH-------------HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 99999997643211 1223334444443322 222345556667 88899888765
No 202
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.22 E-value=5e-11 Score=97.52 Aligned_cols=111 Identities=13% Similarity=0.072 Sum_probs=59.3
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHH-HHHHHHhcccccccEEEEEe
Q 036158 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAI-HILESLFGKKISDYMIVVFT 145 (225)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~vv~~ 145 (225)
.+..+.|+||||+.+.. . .+ ...+|.+++|++.... .+.+.+ ..+.+ .+.++++|
T Consensus 146 ~~~~~iliDT~Gi~~~~---~----~v-------~~~~d~vl~v~d~~~~---~~~~~i~~~i~~-------~~~ivvlN 201 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSE---T----AV-------ADLTDFFLVLMLPGAG---DELQGIKKGIFE-------LADMIAVN 201 (337)
T ss_dssp TTCCEEEEEECSSSSCH---H----HH-------HTTSSEEEEEECSCC---------CCTTHHH-------HCSEEEEE
T ss_pred CCCCEEEEECCCCCcch---h----hH-------HhhCCEEEEEEcCCCc---ccHHHHHHHHhc-------cccEEEEE
Confidence 46789999999987531 1 11 2467999999987522 111111 11111 35678889
Q ss_pred cCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC---cEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 146 GGDELEDNDETLEDYLGRECPKPLKEILQLCDN---RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 146 k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
|+|..... .......++ +...+..... .+ .......|+..+.++++|++.|.++..
T Consensus 202 K~Dl~~~~-~~s~~~~~~-----l~~a~~l~~~~~~~~--~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 202 KADDGDGE-RRASAAASE-----YRAALHILTPPSATW--TPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CCSTTCCH-HHHHHHHHH-----HHHHHTTBCCSBTTB--CCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred chhccCch-hHHHHHHHH-----HHHHHHhccccccCC--CCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99975432 111112222 2222221110 00 001122566777899999999988776
No 203
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.22 E-value=1.4e-11 Score=102.13 Aligned_cols=92 Identities=17% Similarity=0.190 Sum_probs=50.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeC----------------CceEEEEeCCCCC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKD----------------GQVVNVIDTPGLF 80 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtPG~~ 80 (225)
....+|+++|.+|+|||||+|+|++... .....+++|..+....+.+++ ...+.+|||||+.
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~--~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~ 97 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA--SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV 97 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc--cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence 4568899999999999999999998875 223455666666655665522 1249999999998
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 036158 81 DSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVR 114 (225)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~ 114 (225)
......+.+...+.. +...+|++++|+|+.
T Consensus 98 ~~as~~~glg~~~l~----~ir~aD~Il~VvD~~ 127 (396)
T 2ohf_A 98 KGAHNGQGLGNAFLS----HISACDGIFHLTRAF 127 (396)
T ss_dssp ---------CCHHHH----HHHTSSSEEEEEEC-
T ss_pred cccchhhHHHHHHHH----HHHhcCeEEEEEecC
Confidence 654332222223333 334669999999975
No 204
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.22 E-value=5.4e-13 Score=110.51 Aligned_cols=124 Identities=19% Similarity=0.198 Sum_probs=75.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCC-----ccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158 19 ERNLVLVGRTGNGKSATANSILGK-----RAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI 93 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (225)
..+|+++|.+|+|||||+|+|++. ....+ ...+++|+...... + +..+.++||||+.+.....+.+..+.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~-~~~~gtT~~~~~~~--~--~~~~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITT-SYFPGTTLDMIEIP--L--ESGATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEE-EECTTSSCEEEEEE--C--STTCEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceee-cCCCCeEEeeEEEE--e--CCCeEEEeCCCcCcHHHHHHHHhHHH
Confidence 467999999999999999999986 22222 23556666654433 3 33489999999986542222222222
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158 94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN 153 (225)
Q Consensus 94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~ 153 (225)
...+ .....+++++++++....+.......++.+. ....|+++++||.|.+...
T Consensus 237 l~~~-~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~-----~~~~~~~~v~~k~d~~~~~ 290 (369)
T 3ec1_A 237 LKII-TPKREIHPRVYQLNEGQTLFFGGLARLDYIK-----GGRRSFVCYMANELTVHRT 290 (369)
T ss_dssp HHHH-SCSSCCCCEEEEECTTEEEEETTTEEEEEEE-----SSSEEEEEEECTTSCEEEE
T ss_pred HHHH-hcccccCceEEEEcCCceEEECCEEEEEEcc-----CCCceEEEEecCCcccccc
Confidence 2222 1235789999999884221111111122221 1236899999999987543
No 205
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.18 E-value=5.8e-10 Score=93.23 Aligned_cols=170 Identities=18% Similarity=0.132 Sum_probs=93.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCC---ceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSG---VTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK 95 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (225)
...++|+|++|+|||||+|.|.|......+....+ .|.. .+....+....++++|+||++...... .++..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~--~~v~q~~~~~~ltv~D~~g~~~~~~~~----~~~L~ 142 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME--RHPYKHPNIPNVVFWDLPGIGSTNFPP----DTYLE 142 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC--CEEEECSSCTTEEEEECCCGGGSSCCH----HHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee--EEeccccccCCeeehHhhcccchHHHH----HHHHH
Confidence 45899999999999999999999653322222211 1211 112222122368999999987432222 22222
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC-------CCcccHHHHhhhcCCch
Q 036158 96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELE-------DNDETLEDYLGRECPKP 168 (225)
Q Consensus 96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~-------~~~~~~~~~~~~~~~~~ 168 (225)
.+.. ...+.+++ ++.. +.......+...+... .+|+++|+||.|.+- -+....++..+.
T Consensus 143 ~~~L--~~~~~~~~-lS~G-~~~kqrv~la~aL~~~-----~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~----- 208 (413)
T 1tq4_A 143 KMKF--YEYDFFII-ISAT-RFKKNDIDIAKAISMM-----KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQD----- 208 (413)
T ss_dssp HTTG--GGCSEEEE-EESS-CCCHHHHHHHHHHHHT-----TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHH-----
T ss_pred HcCC--CccCCeEE-eCCC-CccHHHHHHHHHHHhc-----CCCeEEEEecCcccccCcccccCCHHHHHHHHHH-----
Confidence 2222 22345554 7765 3444555566666552 379999999988651 111123333333
Q ss_pred HHHHH----HHcC---CcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158 169 LKEIL----QLCD---NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 169 ~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
++++. ...+ ...+.+++.... +.++++|.+.|.+.+++..
T Consensus 209 l~~l~~~~l~~~g~~~~~iiliSsh~l~----~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 209 IRLNCVNTFRENGIAEPPIFLLSNKNVC----HYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHHHHHHHHHHTTCSSCCEEECCTTCTT----STTHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHhcCCCCCcEEEEecCcCC----ccCHHHHHHHHHHhCccch
Confidence 33333 2222 234555554322 2579999999988887654
No 206
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=99.14 E-value=2.1e-10 Score=99.79 Aligned_cols=110 Identities=20% Similarity=0.178 Sum_probs=64.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCccc-cccCCCCCceeEEEEEEEE--eeCCceEEEEeCCCCCCCCC-CcHHHHH
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKRAF-KSKAGSSGVTKTCEMQRTM--LKDGQVVNVIDTPGLFDSSA-DSEFVSK 91 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~-~~~~~~~~~t~~~~~~~~~--~~~~~~~~liDtPG~~~~~~-~~~~~~~ 91 (225)
..+..+|+|+|.+|+|||||+|+|+|.... .......+.|......... ...+..+.|+||||+.+... .......
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~ 114 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSW 114 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHH
Confidence 345688999999999999999999998742 2222222344443322221 12467899999999987543 2221122
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHH
Q 036158 92 EIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESL 131 (225)
Q Consensus 92 ~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~ 131 (225)
.+.-.+... + ++|+++...++..+...+..+.+.
T Consensus 115 ~fala~lls----s--~lv~n~~~~i~~~dl~~l~~v~e~ 148 (592)
T 1f5n_A 115 IFALAVLLS----S--TFVYNSIGTINQQAMDQLYYVTEL 148 (592)
T ss_dssp HHHHHHHHC----S--EEEEEEESCSSHHHHHTTHHHHTH
T ss_pred HHHHHHHhc----C--eEEEECCCCccHHHHHHHHHHHHH
Confidence 111111112 2 455565557788877766655443
No 207
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.12 E-value=1.4e-10 Score=88.91 Aligned_cols=157 Identities=13% Similarity=0.079 Sum_probs=83.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc-----ccccCCCCCcee--------EEEEEEEEe-----------------eC
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA-----FKSKAGSSGVTK--------TCEMQRTML-----------------KD 67 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~-----~~~~~~~~~~t~--------~~~~~~~~~-----------------~~ 67 (225)
..++|+++|.+|+|||||+|.|++... ....... +.+. ......+.. ..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDV-VSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSC-CCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCC-CCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 457899999999999999999986421 0000001 1000 000011100 02
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 036158 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGG 147 (225)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~ 147 (225)
+..+.+|||||..... . ......+.+++|+|+..... . ....... + ..|.++|+||+
T Consensus 108 ~~d~iiidt~G~~~~~--~------------~~~~~~~~~i~vvd~~~~~~--~--~~~~~~~-~----~~~~iiv~NK~ 164 (221)
T 2wsm_A 108 DCDLLLIENVGNLICP--V------------DFDLGENYRVVMVSVTEGDD--V--VEKHPEI-F----RVADLIVINKV 164 (221)
T ss_dssp TCSEEEEEEEEBSSGG--G------------GCCCSCSEEEEEEEGGGCTT--H--HHHCHHH-H----HTCSEEEEECG
T ss_pred CCCEEEEeCCCCCCCC--c------------hhccccCcEEEEEeCCCcch--h--hhhhhhh-h----hcCCEEEEecc
Confidence 3468889888852110 0 01124578899999864321 1 1111111 1 26889999999
Q ss_pred CCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 148 DELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 148 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
|.........++. .+.++..+.....+ ..|+.++.++++|++.|.+.+.+.
T Consensus 165 Dl~~~~~~~~~~~---------~~~~~~~~~~~~i~----~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 165 ALAEAVGADVEKM---------KADAKLINPRAKII----EMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp GGHHHHTCCHHHH---------HHHHHHHCTTSEEE----ECBTTTTBTHHHHHHHHHHHHC--
T ss_pred cCCcchhhHHHHH---------HHHHHHhCCCCeEE----EeecCCCCCHHHHHHHHHHHHHHH
Confidence 9753210122222 22333333222222 345567789999999998877554
No 208
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.11 E-value=1.1e-10 Score=97.01 Aligned_cols=92 Identities=16% Similarity=0.146 Sum_probs=65.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC-----------------ceEEEEeCCCC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG-----------------QVVNVIDTPGL 79 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~liDtPG~ 79 (225)
....+|+++|++|+|||||+|+|++...... ...+++|..+....+.+ .+ ..+.++||||+
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~-~~~p~tTi~p~~G~v~v-~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNP-ANYPYATIDPEEAKVAV-PDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTST-TCCSSCCCCTTEEEEEE-CCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccc-cCCCceeecceeeeeee-CCcchhhhhhhcccccccCcceEEEecccc
Confidence 4568999999999999999999999764333 33566676666666666 33 35899999999
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 036158 80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVR 114 (225)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~ 114 (225)
.......+.+...+...+ ..+|++++|++..
T Consensus 96 ~~~~s~~e~L~~~fl~~i----r~~d~il~Vvd~~ 126 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHV----RAVDAIYQVVRAF 126 (392)
T ss_dssp CCCCCSSSSSCHHHHHHH----TTCSEEEEEEECC
T ss_pred ccCCcHHHHHHHHHHHHH----HHHHHHHHHHhcc
Confidence 865443333333343333 3679999999874
No 209
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.11 E-value=1.7e-10 Score=92.09 Aligned_cols=67 Identities=22% Similarity=0.389 Sum_probs=43.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEF 88 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~ 88 (225)
...++|+++|.+|+|||||+|+|++.....++ ..+++|+..+. +.+ +..+.|+||||+........+
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~--~~~--~~~~~l~DtpG~~~~~~~~~~ 184 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQW--VKV--GKELELLDTPGILWPKFEDEL 184 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CC--EEE--TTTEEEEECCCCCCSCCCCHH
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecC-CCCCeeeeeEE--EEe--CCCEEEEECcCcCCCCCCCHH
Confidence 35689999999999999999999998765443 34566666543 233 457999999999876655443
No 210
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.08 E-value=1.9e-10 Score=101.00 Aligned_cols=81 Identities=17% Similarity=0.188 Sum_probs=45.0
Q ss_pred ceEEEEeCCCCCCCC--CCcHHHHHHHHHHHhhcCC-CccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEe
Q 036158 69 QVVNVIDTPGLFDSS--ADSEFVSKEIVKCIGMTKD-GIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFT 145 (225)
Q Consensus 69 ~~~~liDtPG~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~ 145 (225)
..+.|+|.||+.... ..+......+...+..+.. ...+++++++.+..+. ....++.+...-.. ..++++|+|
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a--~~~~l~la~~v~~~--g~rtI~VlT 222 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA--TTEALSMAQEVDPE--GDRTIGILT 222 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT--TCHHHHHHHHHCSS--CCSEEEEEE
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc--cHHHHHHHHHHhhc--CCceEEEec
Confidence 469999999987632 2233344455555555433 3355666666542322 22344555554222 368999999
Q ss_pred cCCCCCCC
Q 036158 146 GGDELEDN 153 (225)
Q Consensus 146 k~D~~~~~ 153 (225)
|+|.+...
T Consensus 223 K~Dlv~~g 230 (608)
T 3szr_A 223 KPDLVDKG 230 (608)
T ss_dssp CGGGSSSS
T ss_pred chhhcCcc
Confidence 99988654
No 211
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.07 E-value=9.2e-10 Score=89.27 Aligned_cols=143 Identities=13% Similarity=0.118 Sum_probs=84.3
Q ss_pred ceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCC-------CC-CCHHHHHHH
Q 036158 54 VTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVR-------NR-FSEEEGAAI 125 (225)
Q Consensus 54 ~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~-------~~-~~~~~~~~~ 125 (225)
.|.......+.+ .+..+.+|||+|. +..+..+..++.+++++|+|++++ +. -...-.+.+
T Consensus 153 ~TiGi~~~~~~~-~~v~l~iwDtgGQ-----------e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~ 220 (327)
T 3ohm_A 153 PTTGIIEYPFDL-QSVIFRMVDVGGQ-----------RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESK 220 (327)
T ss_dssp CCCSEEEEEEEE-TTEEEEEEEECCS-----------HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHH
T ss_pred ceeeEEEEEEEe-eceeeEEEEcCCc-----------hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHH
Confidence 355556666777 7889999999994 456677778999999999999764 11 112233455
Q ss_pred HHHHHHhccc--ccccEEEEEecCCCCCCC--cccHHHHhhhc-----CC----chHHHHHHHc----CCcEEEeeCCCc
Q 036158 126 HILESLFGKK--ISDYMIVVFTGGDELEDN--DETLEDYLGRE-----CP----KPLKEILQLC----DNRCVLFDNKTK 188 (225)
Q Consensus 126 ~~l~~~~~~~--~~~~~~vv~~k~D~~~~~--~~~~~~~~~~~-----~~----~~~~~~~~~~----~~~~~~~~~~~~ 188 (225)
.++.+..... ...|+++++||+|+.... ...+..+..+. .. +.+.+.+... ...++.+.
T Consensus 221 ~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~---- 296 (327)
T 3ohm_A 221 ALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHF---- 296 (327)
T ss_dssp HHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEE----
T ss_pred HHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEE----
Confidence 5666655432 247899999999965310 00111111100 00 0112122111 12333343
Q ss_pred cccccHHHHHHHHHHHHHHHHHcC
Q 036158 189 DTAKRTEQVGKLLSLVNSVIVQNG 212 (225)
Q Consensus 189 ~~~~~~~~v~~l~~~i~~~~~~~~ 212 (225)
++|....+|+.++..+.+.+..++
T Consensus 297 TsA~d~~nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 297 TCATDTENIRFVFAAVKDTILQLN 320 (327)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred EEeecCHHHHHHHHHHHHHHHHHh
Confidence 345566999999999998877654
No 212
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.92 E-value=2.5e-08 Score=81.21 Aligned_cols=84 Identities=11% Similarity=0.106 Sum_probs=58.9
Q ss_pred eeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCC--------CCCHHHHHHHH
Q 036158 55 TKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRN--------RFSEEEGAAIH 126 (225)
Q Consensus 55 t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~--------~~~~~~~~~~~ 126 (225)
|.......+.+ .+..+.+|||+|. +..+..+..++.+++++|+|+|+++ .-...-.+.+.
T Consensus 148 TiGi~~~~~~~-~~v~l~iwDtaGQ-----------e~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~ 215 (340)
T 4fid_A 148 TTGIHEYDFVV-KDIPFHLIDVGGQ-----------RSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIA 215 (340)
T ss_dssp CCSCEEEEEES-SSCEEEEEECCSC-----------HHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHH
T ss_pred eeeeEEEEEEe-eeeeeccccCCCc-----------ccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHH
Confidence 45556666777 7789999999994 4566777789999999999999861 01122234455
Q ss_pred HHHHHhccc--ccccEEEEEecCCCC
Q 036158 127 ILESLFGKK--ISDYMIVVFTGGDEL 150 (225)
Q Consensus 127 ~l~~~~~~~--~~~~~~vv~~k~D~~ 150 (225)
++.+..... ...|++++.||+|+.
T Consensus 216 ~~~~i~~~~~~~~~piiLv~NK~DL~ 241 (340)
T 4fid_A 216 VFKDIMTNEFLKGAVKLIFLNKMDLF 241 (340)
T ss_dssp HHHHHHHCGGGTTSEEEEEEECHHHH
T ss_pred HHHHHhhhhccCCCeEEEEEECchhh
Confidence 555554432 246999999999965
No 213
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.87 E-value=1.5e-09 Score=85.74 Aligned_cols=60 Identities=30% Similarity=0.447 Sum_probs=40.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA 84 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (225)
.+++++|.+|+|||||+|+|.+.....+. ..+++|+..+.. . .+..+.||||||+.+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~-~~~g~T~~~~~~--~--~~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVG-AQPGITKGIQWF--S--LENGVKILDTPGILYKNI 159 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEE--E--CTTSCEEESSCEECCCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccC-CCCCCccceEEE--E--eCCCEEEEECCCcccCcC
Confidence 69999999999999999999988764443 244555554322 2 245789999999997654
No 214
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.80 E-value=1.1e-07 Score=79.86 Aligned_cols=143 Identities=13% Similarity=0.116 Sum_probs=78.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHh------CCccccccCCCCCc-----------eeEEEEEEEEe---------------
Q 036158 18 GERNLVLVGRTGNGKSATANSIL------GKRAFKSKAGSSGV-----------TKTCEMQRTML--------------- 65 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~------~~~~~~~~~~~~~~-----------t~~~~~~~~~~--------------- 65 (225)
+...|+++|++|+||||+++.|. |.++.......... ......+....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46789999999999999998886 33332111110000 00000000000
Q ss_pred -eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEE
Q 036158 66 -KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVF 144 (225)
Q Consensus 66 -~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~ 144 (225)
..+..++|+||||.... ......++....... .+|.+++|+|+... .......+.+.+. .....+|+
T Consensus 179 ~~~~~DvVIIDTaGrl~~---d~~lm~el~~i~~~~--~pd~vlLVvDA~~g--q~a~~~a~~f~~~-----~~i~gVIl 246 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKE---DKALIEEMKQISNVI--HPHEVILVIDGTIG--QQAYNQALAFKEA-----TPIGSIIV 246 (443)
T ss_dssp HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGG--GGHHHHHHHHHHS-----CTTEEEEE
T ss_pred HhCCCCEEEEECCCcccc---hHHHHHHHHHHHHhh--cCceEEEEEeCCCc--hhHHHHHHHHHhh-----CCCeEEEE
Confidence 02357999999997642 344444444432222 57999999998743 2223333333332 25667999
Q ss_pred ecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeC
Q 036158 145 TGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDN 185 (225)
Q Consensus 145 ~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (225)
||+|..... . .+.++...++.++.++..
T Consensus 247 TKlD~~~~g----G---------~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 247 TKLDGSAKG----G---------GALSAVAATGAPIKFIGT 274 (443)
T ss_dssp ECCSSCSSH----H---------HHHHHHHTTCCCEEEEEC
T ss_pred ECCCCcccc----c---------HHHHHHHHHCCCEEEEEc
Confidence 999965331 0 133455566777666554
No 215
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.74 E-value=2.6e-08 Score=76.40 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=22.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 18 GERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
..++|+|+|.+|+|||||++.|+..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999854
No 216
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.61 E-value=1.2e-07 Score=79.98 Aligned_cols=110 Identities=18% Similarity=0.182 Sum_probs=59.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCC-----------------ccccccCCCCCceeEEEEEE----EEeeC--CceEE
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGK-----------------RAFKSKAGSSGVTKTCEMQR----TMLKD--GQVVN 72 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~-----------------~~~~~~~~~~~~t~~~~~~~----~~~~~--~~~~~ 72 (225)
..+...|+|+|++++|||||+|.|+|. ..+...+.....|...-... ...+. ...+.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vv 143 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEE
Confidence 346678999999999999999999964 22322222222233222111 11112 24699
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHH
Q 036158 73 VIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESL 131 (225)
Q Consensus 73 liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~ 131 (225)
|+||||+.+... +.+....+...... -.+.+||-+ ...+...+.+.+..+.++
T Consensus 144 llDTeG~~~~~~-~~~~d~~ifal~~l---LSs~~IyN~--~~~i~~~~l~~L~~~~e~ 196 (447)
T 3q5d_A 144 LMDTQGTFDSQS-TLRDSATVFALSTM---ISSIQVYNL--SQNVQEDDLQHLQLFTEY 196 (447)
T ss_dssp EEEEECCCSSHH-HHHHHHHHHHHHHH---HCSEEEEEE--SSSCCHHHHHHHHHHHHH
T ss_pred EEcCCccccccc-chhhhHHHHHHHHH---HhhHHHHhh--cccccHHHHHHHHHHHHH
Confidence 999999986532 11111122211111 125555544 336677777777665553
No 217
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.60 E-value=4.6e-08 Score=82.38 Aligned_cols=121 Identities=18% Similarity=0.162 Sum_probs=67.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCC------ccccccCCCC----------------------C-ceeEEE-E--EEE-E
Q 036158 18 GERNLVLVGRTGNGKSATANSILGK------RAFKSKAGSS----------------------G-VTKTCE-M--QRT-M 64 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~------~~~~~~~~~~----------------------~-~t~~~~-~--~~~-~ 64 (225)
+...|+++|++|+||||+++.|.+. ++.-...... . .+.+.. . ..+ .
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998752 2111100000 0 111100 0 000 1
Q ss_pred eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccc-ccEEEE
Q 036158 65 LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKIS-DYMIVV 143 (225)
Q Consensus 65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~vv 143 (225)
+ .+..++|+||||.... ...+..++... .....+|.+++|+|+.... . .+..+.. |... . ....+|
T Consensus 178 ~-~~~D~vIIDT~G~~~~---~~~l~~~l~~i--~~~~~~d~vllVvda~~g~--~---~~~~~~~-~~~~-~~~i~gvV 244 (432)
T 2v3c_C 178 F-KKADVLIIDTAGRHKE---EKGLLEEMKQI--KEITNPDEIILVIDGTIGQ--Q---AGIQAKA-FKEA-VGEIGSII 244 (432)
T ss_dssp T-SSCSEEEEECCCSCSS---HHHHHHHHHHT--TSSSCCSEEEEEEEGGGGG--G---HHHHHHH-HHTT-SCSCEEEE
T ss_pred h-hCCCEEEEcCCCCccc---cHHHHHHHHHH--HHHhcCcceeEEeeccccH--H---HHHHHHH-Hhhc-ccCCeEEE
Confidence 2 4557999999997632 33344444322 2233689999999986442 1 2222322 3222 1 238899
Q ss_pred EecCCCCC
Q 036158 144 FTGGDELE 151 (225)
Q Consensus 144 ~~k~D~~~ 151 (225)
+||+|...
T Consensus 245 lnK~D~~~ 252 (432)
T 2v3c_C 245 VTKLDGSA 252 (432)
T ss_dssp EECSSSCS
T ss_pred EeCCCCcc
Confidence 99999754
No 218
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.57 E-value=3.3e-07 Score=75.17 Aligned_cols=141 Identities=15% Similarity=0.154 Sum_probs=82.8
Q ss_pred eeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC--------CHHHHHHHH
Q 036158 55 TKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRF--------SEEEGAAIH 126 (225)
Q Consensus 55 t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~--------~~~~~~~~~ 126 (225)
|.......+.+ ++..+.+|||+|... .+..+..++.+++++|||+|+++.- ...-.+...
T Consensus 180 T~Gi~~~~~~~-~~~~l~iwDt~GQe~-----------~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~ 247 (353)
T 1cip_A 180 TTGIVETHFTF-KDLHFKMFDVGGQRS-----------ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMK 247 (353)
T ss_dssp CCSEEEEEEEE-TTEEEEEEEECCSGG-----------GGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHH
T ss_pred eeceEEEEEee-CCeeEEEEeCCCchh-----------hhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHH
Confidence 45555666777 688999999999642 3455567889999999999997321 122344555
Q ss_pred HHHHHhccc--ccccEEEEEecCCCCCCC--cccHHHH----hhhcCCchHHHHHH----Hc-----CCcEEEeeCCCcc
Q 036158 127 ILESLFGKK--ISDYMIVVFTGGDELEDN--DETLEDY----LGRECPKPLKEILQ----LC-----DNRCVLFDNKTKD 189 (225)
Q Consensus 127 ~l~~~~~~~--~~~~~~vv~~k~D~~~~~--~~~~~~~----~~~~~~~~~~~~~~----~~-----~~~~~~~~~~~~~ 189 (225)
++.++.... ...|+++++||.|+.... ...+..+ ..........+.+. .. ...+..+ .+
T Consensus 248 ~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~----et 323 (353)
T 1cip_A 248 LFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTH----FT 323 (353)
T ss_dssp HHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEE----EC
T ss_pred HHHHHHcCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEE----EE
Confidence 666655432 247999999999974210 0000000 00000011222222 22 2233333 34
Q ss_pred ccccHHHHHHHHHHHHHHHHHc
Q 036158 190 TAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 190 ~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
||..+.++.+++..+.+.+...
T Consensus 324 SA~~~~nV~~vF~~v~~~i~~~ 345 (353)
T 1cip_A 324 CATDTKNVQFVFDAVTDVIIKN 345 (353)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHH
T ss_pred ECcCchhHHHHHHHHHHHHHHH
Confidence 5667799999999998777654
No 219
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.53 E-value=9e-07 Score=74.36 Aligned_cols=144 Identities=15% Similarity=0.116 Sum_probs=78.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHh------CCccccccCCC---------------CCceeEEE-------------EEEE
Q 036158 18 GERNLVLVGRTGNGKSATANSIL------GKRAFKSKAGS---------------SGVTKTCE-------------MQRT 63 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~------~~~~~~~~~~~---------------~~~t~~~~-------------~~~~ 63 (225)
+...|+++|++|+||||++..|. |.++.-..... .+...... ....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46789999999999999998886 33321110000 00000000 0000
Q ss_pred EeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEE
Q 036158 64 MLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVV 143 (225)
Q Consensus 64 ~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv 143 (225)
.. .+..+.|+||||..... .+.....++....... .++.+++|+|+... .......+.+.+.. .+..+|
T Consensus 176 ~~-~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~--~pd~vlLVlDa~~g--q~a~~~a~~f~~~~-----~~~gVI 244 (433)
T 3kl4_A 176 VK-NKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVL--KPDDVILVIDASIG--QKAYDLASRFHQAS-----PIGSVI 244 (433)
T ss_dssp TT-TTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHH--CCSEEEEEEEGGGG--GGGHHHHHHHHHHC-----SSEEEE
T ss_pred Hh-cCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhh--CCcceEEEEeCccc--hHHHHHHHHHhccc-----CCcEEE
Confidence 01 24578999999975411 1223344444433222 46899999998633 22233444444332 567899
Q ss_pred EecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeC
Q 036158 144 FTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDN 185 (225)
Q Consensus 144 ~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (225)
+||+|..... .. ..++....+.++.++..
T Consensus 245 lTKlD~~a~~----G~---------als~~~~~g~Pi~fig~ 273 (433)
T 3kl4_A 245 ITKMDGTAKG----GG---------ALSAVVATGATIKFIGT 273 (433)
T ss_dssp EECGGGCSCH----HH---------HHHHHHHHTCEEEEEEC
T ss_pred Eecccccccc----hH---------HHHHHHHHCCCEEEEEC
Confidence 9999965321 11 23445556777665544
No 220
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.47 E-value=1.1e-06 Score=72.24 Aligned_cols=83 Identities=17% Similarity=0.195 Sum_probs=54.5
Q ss_pred eeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC---------CHHHHHHH
Q 036158 55 TKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRF---------SEEEGAAI 125 (225)
Q Consensus 55 t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~---------~~~~~~~~ 125 (225)
|.......+.+ ++..+.+|||+|.. ..+..+..++.+++++|||+|+++ + ...-.+..
T Consensus 188 T~Gi~~~~~~~-~~~~l~i~Dt~Gq~-----------~~r~~w~~~f~~~~~iIfv~dls~-~dq~l~ed~~~n~~~es~ 254 (362)
T 1zcb_A 188 TKGIHEYDFEI-KNVPFKMVDVGGQR-----------SERKRWFECFDSVTSILFLVSSSE-FDQVLMEDRQTNRLTESL 254 (362)
T ss_dssp CSSEEEEEEEE-TTEEEEEEEECC------------------CTTSCTTCCEEEEEEETTC-TTCEETTEEEEEHHHHHH
T ss_pred ccceEEEEeee-CCeEEEEEeccchh-----------hhhhhHHHHhCCCCEEEEEEECcc-ccccccccccccHHHHHH
Confidence 44555566777 78899999999964 334555678889999999999973 1 12233445
Q ss_pred HHHHHHhccc--ccccEEEEEecCCCC
Q 036158 126 HILESLFGKK--ISDYMIVVFTGGDEL 150 (225)
Q Consensus 126 ~~l~~~~~~~--~~~~~~vv~~k~D~~ 150 (225)
.++....... ...|+++++||.|+.
T Consensus 255 ~~~~~i~~~~~~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 255 NIFETIVNNRVFSNVSIILFLNKTDLL 281 (362)
T ss_dssp HHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred HHHHHHhcchhhCCCCEEEEEEChhhh
Confidence 5555554432 247999999999975
No 221
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.40 E-value=1.3e-05 Score=65.15 Aligned_cols=145 Identities=16% Similarity=0.119 Sum_probs=76.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcccccc------CCC-C-Cc---------eeEEEEEEEE---------------
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFKSK------AGS-S-GV---------TKTCEMQRTM--------------- 64 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~------~~~-~-~~---------t~~~~~~~~~--------------- 64 (225)
.+.-.|+++|++|+||||+++.|.+....... ... . +. .....+....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 44678999999999999999998764321000 000 0 00 0000000000
Q ss_pred -eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEE
Q 036158 65 -LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVV 143 (225)
Q Consensus 65 -~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv 143 (225)
...+..+.++||+|...... ....++....... .+|-.++++|+... . ..++.++.+... .....++
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~---~l~~eL~~i~ral--~~de~llvLDa~t~--~---~~~~~~~~~~~~--~~it~ii 274 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNR---NLMDEMKKIARVT--KPNLVIFVGDALAG--N---AIVEQARQFNEA--VKIDGII 274 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTT---CHHHHHHHHHHHH--CCSEEEEEEEGGGT--T---HHHHHHHHHHHH--SCCCEEE
T ss_pred HHhccchhhHHhhccchhHHH---HHHHHHHHHHHHh--cCCCCEEEEecHHH--H---HHHHHHHHHHHh--cCCCEEE
Confidence 00123577899999864322 2333333322111 36889999997633 2 233333332111 1456899
Q ss_pred EecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158 144 FTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK 186 (225)
Q Consensus 144 ~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (225)
+||.|..... -.+..+....+.++.++...
T Consensus 275 lTKlD~~a~~-------------G~~l~~~~~~~~pi~~i~~G 304 (328)
T 3e70_C 275 LTKLDADARG-------------GAALSISYVIDAPILFVGVG 304 (328)
T ss_dssp EECGGGCSCC-------------HHHHHHHHHHTCCEEEEECS
T ss_pred EeCcCCccch-------------hHHHHHHHHHCCCEEEEeCC
Confidence 9999963321 11345666667777776654
No 222
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.40 E-value=1.6e-05 Score=63.89 Aligned_cols=145 Identities=14% Similarity=0.107 Sum_probs=76.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcccc------ccCCC-C-Cc---------eeEEEEEEEE----------------
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRAFK------SKAGS-S-GV---------TKTCEMQRTM---------------- 64 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~------~~~~~-~-~~---------t~~~~~~~~~---------------- 64 (225)
+.-.|+++|++||||||+++.|.+..... ..... . +. .....+....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999987432110 00000 0 00 0000000000
Q ss_pred eeCCceEEEEeCCCCCCCCCCcHHHHHHH---HHHHh-hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccE
Q 036158 65 LKDGQVVNVIDTPGLFDSSADSEFVSKEI---VKCIG-MTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYM 140 (225)
Q Consensus 65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 140 (225)
...+..+.++||+|..... .....++ +..+. .....++.+++++|+..+ ......+..+.+.. ...
T Consensus 181 ~~~~~d~~llDt~G~~~~~---~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~--~~~~~~~~~~~~~~-----~~t 250 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTK---HNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG--QNGLEQAKKFHEAV-----GLT 250 (304)
T ss_dssp HHHTCSEEEECCCCCCTTC---HHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC--THHHHHHHHHHHHH-----CCS
T ss_pred HhCCCCEEEecCCCCCCch---HHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHH--HHHHHHHHHHHHHc-----CCc
Confidence 0012357799999986432 2222222 22222 234567888889997633 22333333333321 456
Q ss_pred EEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeC
Q 036158 141 IVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDN 185 (225)
Q Consensus 141 ~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (225)
.+++||.|..... -.+-.+....+.+..++..
T Consensus 251 ~iivTh~d~~a~g-------------g~~l~i~~~~~~pi~~ig~ 282 (304)
T 1rj9_A 251 GVIVTKLDGTAKG-------------GVLIPIVRTLKVPIKFVGV 282 (304)
T ss_dssp EEEEECTTSSCCC-------------TTHHHHHHHHCCCEEEEEC
T ss_pred EEEEECCcccccc-------------cHHHHHHHHHCCCeEEEeC
Confidence 8999999854221 1134566667777777654
No 223
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.36 E-value=2e-06 Score=73.15 Aligned_cols=147 Identities=11% Similarity=0.117 Sum_probs=79.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcc------ccccCCCCCc-----------eeEEEEEEEE---------------
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRA------FKSKAGSSGV-----------TKTCEMQRTM--------------- 64 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~------~~~~~~~~~~-----------t~~~~~~~~~--------------- 64 (225)
...-.|+|+|++|||||||++.|.+... .-........ ...+.+....
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~ 370 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 370 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence 4457899999999999999999875321 1000000000 0000010000
Q ss_pred -eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH---hhc-CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc
Q 036158 65 -LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI---GMT-KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDY 139 (225)
Q Consensus 65 -~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 139 (225)
...+..++|+||+|.... ...+..++.+.. ... ...++-++||+|+..+ ......++.+.+.+ ..
T Consensus 371 a~~~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~-----~i 440 (503)
T 2yhs_A 371 AKARNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAV-----GL 440 (503)
T ss_dssp HHHTTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHT-----CC
T ss_pred HHhcCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhc-----CC
Confidence 012346889999997533 233333433332 211 2346889999998633 22233344444322 34
Q ss_pred EEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158 140 MIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK 186 (225)
Q Consensus 140 ~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (225)
..+|+||.|..... -.+..++..++.++.++...
T Consensus 441 tgvIlTKLD~takg-------------G~~lsi~~~~~~PI~fig~G 474 (503)
T 2yhs_A 441 TGITLTKLDGTAKG-------------GVIFSVADQFGIPIRYIGVG 474 (503)
T ss_dssp SEEEEECGGGCSCC-------------THHHHHHHHHCCCEEEEECS
T ss_pred CEEEEEcCCCcccc-------------cHHHHHHHHHCCCEEEEecC
Confidence 57899999953221 12455666777777776554
No 224
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.32 E-value=2.6e-06 Score=68.27 Aligned_cols=144 Identities=13% Similarity=0.096 Sum_probs=74.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHh------CCccccccCCCCCc-ee----------EEEEEE--------------E-Eee
Q 036158 19 ERNLVLVGRTGNGKSATANSIL------GKRAFKSKAGSSGV-TK----------TCEMQR--------------T-MLK 66 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~------~~~~~~~~~~~~~~-t~----------~~~~~~--------------~-~~~ 66 (225)
...|+++|++|+||||+++.|. +.++.-........ +. ...... + ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5678899999999999998876 33321111110000 00 000000 0 000
Q ss_pred -CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEe
Q 036158 67 -DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFT 145 (225)
Q Consensus 67 -~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~ 145 (225)
.+..++|+||||.... ...+.+..++..... ...+|.+++|+++... ......++.+.+ . .....+|+|
T Consensus 178 ~~~~D~ViIDTpg~~~~-~~~~~l~~el~~i~~--~~~~d~vllVvda~~g--~~~~~~~~~~~~----~-~~i~gvVln 247 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGY-GEEAALLEEMKNIYE--AIKPDEVTLVIDASIG--QKAYDLASKFNQ----A-SKIGTIIIT 247 (297)
T ss_dssp HTTCSEEEEECCCSCCT-TCHHHHHHHHHHHHH--HHCCSEEEEEEEGGGG--GGHHHHHHHHHH----T-CTTEEEEEE
T ss_pred hCCCCEEEEeCCCCccc-ccHHHHHHHHHHHHH--HhcCCEEEEEeeCCch--HHHHHHHHHHHh----h-CCCCEEEEe
Confidence 3457999999997641 122333333332211 1157999999998632 222223332222 1 133788999
Q ss_pred cCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeC
Q 036158 146 GGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDN 185 (225)
Q Consensus 146 k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (225)
|+|..... . ...++....+.++.++..
T Consensus 248 k~D~~~~~----g---------~~~~~~~~~~~pi~~i~~ 274 (297)
T 1j8m_F 248 KMDGTAKG----G---------GALSAVAATGATIKFIGT 274 (297)
T ss_dssp CGGGCTTH----H---------HHHHHHHTTTCCEEEEEC
T ss_pred CCCCCcch----H---------HHHHHHHHHCcCEEEEeC
Confidence 99964321 1 133456666777666544
No 225
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.31 E-value=7.3e-06 Score=69.02 Aligned_cols=123 Identities=16% Similarity=0.116 Sum_probs=66.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHh-------CCccccccCCCCCc-e----------eEEEEEE--------------E-
Q 036158 17 NGERNLVLVGRTGNGKSATANSIL-------GKRAFKSKAGSSGV-T----------KTCEMQR--------------T- 63 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~-------~~~~~~~~~~~~~~-t----------~~~~~~~--------------~- 63 (225)
.+...|+++|++|+||||+...|. |.++.-........ . ....... +
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 445789999999999999998876 55442211111000 0 0000000 0
Q ss_pred Eee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEE
Q 036158 64 MLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIV 142 (225)
Q Consensus 64 ~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 142 (225)
... .+..++|+||||.... ......++..... ...++.+++|+++.... .....++.+. .. ....-+
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~---~~~l~~~L~~~~~--~~~p~~vllVvda~~g~--~~~~~~~~f~----~~-l~i~gv 245 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHV---DEAMMDEIKQVHA--SINPVETLFVVDAMTGQ--DAANTAKAFN----EA-LPLTGV 245 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTT---CHHHHHHHHHHHH--HSCCSEEEEEEETTBCT--THHHHHHHHH----HH-SCCCCE
T ss_pred HHHhCCCCEEEEECCCcccc---cHHHHHHHHHHHH--hhcCcceeEEeecchhH--HHHHHHHHHh----cc-CCCeEE
Confidence 001 3557999999997543 2333444433321 22679999999986432 2222222222 21 122457
Q ss_pred EEecCCCCC
Q 036158 143 VFTGGDELE 151 (225)
Q Consensus 143 v~~k~D~~~ 151 (225)
|+||+|...
T Consensus 246 VlnK~D~~~ 254 (433)
T 2xxa_A 246 VLTKVDGDA 254 (433)
T ss_dssp EEECTTSSS
T ss_pred EEecCCCCc
Confidence 999999653
No 226
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=98.25 E-value=1.5e-05 Score=66.96 Aligned_cols=125 Identities=18% Similarity=0.192 Sum_probs=69.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhC-----------------CccccccCCCCCceeEEEEEE----EEeeCC--ceEEE
Q 036158 17 NGERNLVLVGRTGNGKSATANSILG-----------------KRAFKSKAGSSGVTKTCEMQR----TMLKDG--QVVNV 73 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~-----------------~~~~~~~~~~~~~t~~~~~~~----~~~~~~--~~~~l 73 (225)
.+...|+|+|..++|||+|+|.|++ ...|...+...+.|...-... ...+.+ ..+.|
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll 144 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence 4667888999999999999997752 234444444444555543321 222233 36999
Q ss_pred EeCCCCCCCCCCcHHHHHHHHH-HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHH---hccc----ccccEEEEEe
Q 036158 74 IDTPGLFDSSADSEFVSKEIVK-CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESL---FGKK----ISDYMIVVFT 145 (225)
Q Consensus 74 iDtPG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~---~~~~----~~~~~~vv~~ 145 (225)
+||.|+.+.....+ ....|.. .+... ..+||=... .+...+.+.+..+.++ ...+ ..+..+.++-
T Consensus 145 lDTEG~~d~~~~~~-~d~~ifaLa~LLS----S~~IyN~~~--~i~~~~L~~L~~~tel~~~i~~~~~~~~Fp~f~wlvR 217 (457)
T 4ido_A 145 MDTQGTFDSQSTLR-DSATVFALSTMIS----SIQVYNLSQ--NVQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLVR 217 (457)
T ss_dssp EEECCBTCTTCCHH-HHHHHHHHHHHHC----SEEEEEEES--SCCHHHHHHHHHHHHHHHHHSCCCSSCSEEEEEEEEE
T ss_pred EeccCCCCcccCcc-ccHHHHHHHHHHh----hheeecccc--cCCHHHHHHHHHHHHHHHHHhhhcccccCCceEEEEe
Confidence 99999997755432 2222221 11122 555554443 5666666666555443 2221 1234566666
Q ss_pred cCC
Q 036158 146 GGD 148 (225)
Q Consensus 146 k~D 148 (225)
-+-
T Consensus 218 Df~ 220 (457)
T 4ido_A 218 DWS 220 (457)
T ss_dssp TCC
T ss_pred cCC
Confidence 554
No 227
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.23 E-value=3.4e-07 Score=73.60 Aligned_cols=59 Identities=27% Similarity=0.360 Sum_probs=34.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCC------CCceeEEEEEEEEeeCCceEEEEeCCCCCCC
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGS------SGVTKTCEMQRTMLKDGQVVNVIDTPGLFDS 82 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~ 82 (225)
.-.++|+|++|+|||||+|+|.+.....++... ..+|+.... +.. . ...++||||+..+
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~--~~~-~--~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IHT-S--GGLVADTPGFSSL 237 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE--EEE-T--TEEEESSCSCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHH--hhc-C--CEEEecCCCcccc
Confidence 458999999999999999999987643332222 123332222 222 2 3478999998754
No 228
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.21 E-value=7.6e-06 Score=65.79 Aligned_cols=96 Identities=15% Similarity=0.094 Sum_probs=53.8
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHH---hh-cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEE
Q 036158 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCI---GM-TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVV 143 (225)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv 143 (225)
+..+.|+||||.. .....+..++.... .. ....++.+++|+++..+ ...+...+.+. .. ....-+|
T Consensus 186 ~~dvvIiDtpg~~---~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~-----~~~l~~a~~~~-~~-~~i~gvV 255 (306)
T 1vma_A 186 NKDVVIIDTAGRL---HTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG-----QNGLVQAKIFK-EA-VNVTGII 255 (306)
T ss_dssp TCSEEEEEECCCC---SCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH-----HHHHHHHHHHH-HH-SCCCEEE
T ss_pred CCCEEEEECCCch---hhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-----HHHHHHHHHHH-hc-CCCCEEE
Confidence 3469999999953 23344444443322 22 12357899999998621 12333333321 11 2445678
Q ss_pred EecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158 144 FTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK 186 (225)
Q Consensus 144 ~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (225)
+||.|..... -.+.++....+.++.++...
T Consensus 256 lTk~D~~~~g-------------G~~l~~~~~~~~Pi~~i~~G 285 (306)
T 1vma_A 256 LTKLDGTAKG-------------GITLAIARELGIPIKFIGVG 285 (306)
T ss_dssp EECGGGCSCT-------------THHHHHHHHHCCCEEEEECS
T ss_pred EeCCCCccch-------------HHHHHHHHHHCCCEEEEeCC
Confidence 9999964332 11455666778777776553
No 229
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.13 E-value=2.1e-05 Score=65.38 Aligned_cols=84 Identities=14% Similarity=0.152 Sum_probs=57.7
Q ss_pred eeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCC--C------CCHHHHHHHH
Q 036158 55 TKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRN--R------FSEEEGAAIH 126 (225)
Q Consensus 55 t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~--~------~~~~~~~~~~ 126 (225)
|.......+.+ ++..+.+|||+|... ++..+..++.+++++|||+|+++ . -...-.+...
T Consensus 204 TiGi~~~~~~~-~~v~l~iwDtaGQe~-----------~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~ 271 (402)
T 1azs_C 204 TSGIFETKFQV-DKVNFHMFDVGGQRD-----------ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALN 271 (402)
T ss_dssp CCSEEEEEEEE-TTEEEEEEEECCSGG-----------GGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHH
T ss_pred eeeeEEEEeec-CCccceecccchhhh-----------hhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHH
Confidence 44455566777 678999999999643 34555678889999999999973 0 0122334555
Q ss_pred HHHHHhccc--ccccEEEEEecCCCC
Q 036158 127 ILESLFGKK--ISDYMIVVFTGGDEL 150 (225)
Q Consensus 127 ~l~~~~~~~--~~~~~~vv~~k~D~~ 150 (225)
++.++.... ...|++++.||+|+.
T Consensus 272 ~~~~i~~~~~~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 272 LFKSIWNNRWLRTISVILFLNKQDLL 297 (402)
T ss_dssp HHHHHHTCTTCSSCCEEEEEECHHHH
T ss_pred HHHHHHhcccCCCCeEEEEEEChhhh
Confidence 666654432 346899999999964
No 230
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.09 E-value=4.4e-05 Score=62.64 Aligned_cols=147 Identities=12% Similarity=0.177 Sum_probs=76.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcccc------ccCCCCCc-------e----eEEEEEEEEe--------------
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFK------SKAGSSGV-------T----KTCEMQRTML-------------- 65 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~------~~~~~~~~-------t----~~~~~~~~~~-------------- 65 (225)
.+.-.|+++|++||||||+++.|.+..... ........ + ....+.....
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~ 234 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK 234 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHH
Confidence 345689999999999999999987642110 00000000 0 0011111000
Q ss_pred ---eCCceEEEEeCCCCCCCCCCcHHHHHHHH---HHH-hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccc
Q 036158 66 ---KDGQVVNVIDTPGLFDSSADSEFVSKEIV---KCI-GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISD 138 (225)
Q Consensus 66 ---~~~~~~~liDtPG~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 138 (225)
..+....++||.|..... +....++. ..+ ......++-+++|+|....++... .+..+.+.. .
T Consensus 235 ~~~~~~~d~~lldt~Gl~~~~---~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~--~~~~~~~~~-----g 304 (359)
T 2og2_A 235 RGKEEGYDVVLCDTSGRLHTN---YSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVV-----G 304 (359)
T ss_dssp HHHHTTCSEEEEECCCCSSCC---HHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHT-----C
T ss_pred HHHhCCCHHHHHHhcCCChhh---hhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHH--HHHHHHHhc-----C
Confidence 012346899999986432 22223232 122 223456787788888654444332 233333211 3
Q ss_pred cEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158 139 YMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK 186 (225)
Q Consensus 139 ~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (225)
...+++||.|..... - ..-.+....+.++.++...
T Consensus 305 ~t~iiiThlD~~~~g----G---------~~lsi~~~~~~pI~~ig~G 339 (359)
T 2og2_A 305 ITGLILTKLDGSARG----G---------CVVSVVEELGIPVKFIGVG 339 (359)
T ss_dssp CCEEEEESCTTCSCT----H---------HHHHHHHHHCCCEEEEECS
T ss_pred CeEEEEecCcccccc----c---------HHHHHHHHhCCCEEEEeCC
Confidence 568899998854322 1 1334556667777776554
No 231
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.09 E-value=4.8e-05 Score=61.00 Aligned_cols=147 Identities=13% Similarity=0.195 Sum_probs=76.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcccc------ccCCCCCc-------e----eEEEEEEEEe--------------
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAFK------SKAGSSGV-------T----KTCEMQRTML-------------- 65 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~------~~~~~~~~-------t----~~~~~~~~~~-------------- 65 (225)
.+.-.++++|++||||||+++.|.+..... ........ + ....+.....
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~ 177 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK 177 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHH
Confidence 345689999999999999999987542110 00000000 0 0011110000
Q ss_pred ---eCCceEEEEeCCCCCCCCCCcHHHHHHHH---HHHh-hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccc
Q 036158 66 ---KDGQVVNVIDTPGLFDSSADSEFVSKEIV---KCIG-MTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISD 138 (225)
Q Consensus 66 ---~~~~~~~liDtPG~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 138 (225)
..+....++||.|..... +....++. ..+. .....++-+++|+|....++... .+..+.+.. .
T Consensus 178 ~~~~~~~d~~lldt~gl~~~~---~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~--~~~~~~~~~-----g 247 (302)
T 3b9q_A 178 RGKEEGYDVVLCDTSGRLHTN---YSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVV-----G 247 (302)
T ss_dssp HHHHTTCSEEEECCCCCSSCC---HHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHT-----C
T ss_pred HHHHcCCcchHHhcCCCCcch---hHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHH--HHHHHHHhc-----C
Confidence 012346789999986432 22233332 2222 23346787788888654444332 233333211 3
Q ss_pred cEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158 139 YMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK 186 (225)
Q Consensus 139 ~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (225)
..++++||.|..... . ..-.+....+.++.++.+.
T Consensus 248 ~t~iiiThlD~~~~~----g---------~~l~~~~~~~~pi~~i~~G 282 (302)
T 3b9q_A 248 ITGLILTKLDGSARG----G---------CVVSVVEELGIPVKFIGVG 282 (302)
T ss_dssp CCEEEEECCSSCSCT----H---------HHHHHHHHHCCCEEEEECS
T ss_pred CCEEEEeCCCCCCcc----C---------hheehHHHHCCCEEEEeCC
Confidence 568899998854321 1 1344556667777776553
No 232
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.08 E-value=2e-06 Score=68.87 Aligned_cols=141 Identities=16% Similarity=0.148 Sum_probs=72.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCc-------cccccCCCCCcee-----------EEEEEE-----------EEeeCC
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKR-------AFKSKAGSSGVTK-----------TCEMQR-----------TMLKDG 68 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~-------~~~~~~~~~~~t~-----------~~~~~~-----------~~~~~~ 68 (225)
+...|+++|++|+||||++..|.+.- +.-........+. ...... ... .+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~~ 182 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-SE 182 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-GG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-cC
Confidence 45689999999999999998875322 1100000000000 000000 011 34
Q ss_pred ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 036158 69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGD 148 (225)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D 148 (225)
..+.|+||||.... ......++...+. ...++.+++|+++... .. .+..+.+.+.. ....-+|+||.|
T Consensus 183 ~dlvIiDT~G~~~~---~~~~~~el~~~l~--~~~~~~~~lVl~at~~--~~---~~~~~~~~~~~--l~~~giVltk~D 250 (296)
T 2px0_A 183 YDHVFVDTAGRNFK---DPQYIDELKETIP--FESSIQSFLVLSATAK--YE---DMKHIVKRFSS--VPVNQYIFTKID 250 (296)
T ss_dssp SSEEEEECCCCCTT---SHHHHHHHHHHSC--CCTTEEEEEEEETTBC--HH---HHHHHTTTTSS--SCCCEEEEECTT
T ss_pred CCEEEEeCCCCChh---hHHHHHHHHHHHh--hcCCCeEEEEEECCCC--HH---HHHHHHHHHhc--CCCCEEEEeCCC
Confidence 57999999998743 2333333333321 2246788999988632 11 22222233321 134567889999
Q ss_pred CCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEee
Q 036158 149 ELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFD 184 (225)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (225)
..... ..+.++....+.++.++.
T Consensus 251 ~~~~~-------------g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 251 ETTSL-------------GSVFNILAESKIGVGFMT 273 (296)
T ss_dssp TCSCC-------------HHHHHHHHTCSCCCSEEC
T ss_pred cccch-------------hHHHHHHHHHCcCEEEEE
Confidence 65332 114456666676655544
No 233
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.08 E-value=4e-05 Score=62.00 Aligned_cols=95 Identities=21% Similarity=0.205 Sum_probs=52.7
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHH---HHhh-cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEE
Q 036158 68 GQVVNVIDTPGLFDSSADSEFVSKEIVK---CIGM-TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVV 143 (225)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv 143 (225)
+..++|+||||.... .+....++.. .+.. ....+|.+++|+++... . ..+..++. |... ....-+|
T Consensus 191 ~yD~VIIDTpg~l~~---~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~---~~l~~~~~-~~~~-~~i~GvV 260 (320)
T 1zu4_A 191 NYDLLLIDTAGRLQN---KTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--Q---NGVIQAEE-FSKV-ADVSGII 260 (320)
T ss_dssp TCSEEEEECCCCGGG---HHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--H---HHHHHHHH-HTTT-SCCCEEE
T ss_pred CCCEEEEcCCCcccc---cHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--H---HHHHHHHH-Hhhc-CCCcEEE
Confidence 457999999996532 2223333322 2221 22357999999998622 2 23344444 3222 2345689
Q ss_pred EecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeC
Q 036158 144 FTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDN 185 (225)
Q Consensus 144 ~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (225)
+||.|..... ..+.++....+.++.++..
T Consensus 261 ltk~d~~~~~-------------g~~~~~~~~~~~Pi~~i~~ 289 (320)
T 1zu4_A 261 LTKMDSTSKG-------------GIGLAIKELLNIPIKMIGV 289 (320)
T ss_dssp EECGGGCSCT-------------THHHHHHHHHCCCEEEEEC
T ss_pred EeCCCCCCch-------------hHHHHHHHHHCcCEEEEeC
Confidence 9999964321 1144566667777766654
No 234
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.04 E-value=7.8e-06 Score=65.64 Aligned_cols=59 Identities=22% Similarity=0.259 Sum_probs=36.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCC------CceeEEEEEEEEeeCCceEEEEeCCCCCCC
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSS------GVTKTCEMQRTMLKDGQVVNVIDTPGLFDS 82 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~liDtPG~~~~ 82 (225)
...++++|++|+|||||+|+|. .....++.... .+|+.... ... . ..-.++||||+...
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~--~~~-~-~~g~v~d~pg~~~~ 229 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRL--IPF-G-KGSFVGDTPGFSKV 229 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEE--EEE-T-TTEEEESSCCCSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEE--EEc-C-CCcEEEECcCcCcC
Confidence 3578999999999999999999 55433322221 12332222 222 1 23478999998643
No 235
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.04 E-value=3.7e-05 Score=63.02 Aligned_cols=72 Identities=11% Similarity=0.157 Sum_probs=47.5
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCC--------CCCCHHHHHHHHHHHHHhccc--cc
Q 036158 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVR--------NRFSEEEGAAIHILESLFGKK--IS 137 (225)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~--------~~~~~~~~~~~~~l~~~~~~~--~~ 137 (225)
...+.+|||+|.... +..+..++.+++++|+|+|++ +.-...-.+...++.+..... ..
T Consensus 182 ~v~l~iwDtaGQe~~-----------r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~ 250 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNE-----------RRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 250 (354)
T ss_dssp --EEEEEEECCSTTG-----------GGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSS
T ss_pred ceeeEEEECCCchhh-----------hHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCC
Confidence 358999999997533 344557888999999999985 111122234445555554332 34
Q ss_pred ccEEEEEecCCCC
Q 036158 138 DYMIVVFTGGDEL 150 (225)
Q Consensus 138 ~~~~vv~~k~D~~ 150 (225)
.|++++.||+|+.
T Consensus 251 ~piiLvgNK~DL~ 263 (354)
T 2xtz_A 251 TSFMLFLNKFDIF 263 (354)
T ss_dssp CEEEEEEECHHHH
T ss_pred CeEEEEEECcchh
Confidence 7999999999964
No 236
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.01 E-value=6.3e-05 Score=63.05 Aligned_cols=72 Identities=22% Similarity=0.293 Sum_probs=40.7
Q ss_pred CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 036158 67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTG 146 (225)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k 146 (225)
.+..++|+||||.... ......++....... .+|.+++|+|+... .. .+..++. |... ....-+|+||
T Consensus 179 ~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~--~pd~vlLVvDa~tg--q~---av~~a~~-f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 179 EARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QE---ALSVARA-FDEK-VGVTGLVLTK 246 (425)
T ss_dssp TTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--TH---HHHHHHH-HHHH-TCCCEEEEES
T ss_pred CCCCEEEEcCCCcccc---cHHHHHHHHHhhhcc--CCceEEEEEeccch--HH---HHHHHHH-HHhc-CCceEEEEeC
Confidence 3456999999997643 233333333322222 57889999998632 22 2233332 2221 1346789999
Q ss_pred CCCC
Q 036158 147 GDEL 150 (225)
Q Consensus 147 ~D~~ 150 (225)
.|..
T Consensus 247 lD~~ 250 (425)
T 2ffh_A 247 LDGD 250 (425)
T ss_dssp GGGC
T ss_pred cCCc
Confidence 9964
No 237
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.99 E-value=3.7e-06 Score=68.87 Aligned_cols=58 Identities=31% Similarity=0.543 Sum_probs=35.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCcc-ccccCCCC--C----ceeEEEEEEEEeeCCceEEEEeCCCCCC
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRA-FKSKAGSS--G----VTKTCEMQRTMLKDGQVVNVIDTPGLFD 81 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~-~~~~~~~~--~----~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (225)
-.++|+|++|+|||||+|.|.|... ..++.... + +|+.... ..++.+ ..++||||+.+
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i--~~v~q~--~~l~dtpgv~e 280 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARL--YHFPHG--GDVIDSPGVRE 280 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEE--EECTTS--CEEEECHHHHT
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEE--EEECCC--CEecCcccHHH
Confidence 4789999999999999999998765 33322111 1 1222222 223222 35799999754
No 238
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.94 E-value=8.5e-06 Score=65.37 Aligned_cols=60 Identities=25% Similarity=0.277 Sum_probs=36.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCC------CceeEEEEEEEEeeCCceEEEEeCCCCCCC
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSS------GVTKTCEMQRTMLKDGQVVNVIDTPGLFDS 82 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~liDtPG~~~~ 82 (225)
.-.++++|++|+|||||+|+|.|......+.... .+|..... ... .....++|+||+...
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~--~~~--~~~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQL--LKF--DFGGYVVDTPGFANL 234 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCE--EEC--TTSCEEESSCSSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEE--EEc--CCCCEEEECcCCCcc
Confidence 3578999999999999999999876543322211 12222211 122 123478999997644
No 239
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.77 E-value=0.00018 Score=57.43 Aligned_cols=93 Identities=16% Similarity=0.173 Sum_probs=51.3
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 036158 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGG 147 (225)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~ 147 (225)
+..++|+||||.... +.....++....... .++.+++|+++.. ... .++.++.+ ... ....-+|+||.
T Consensus 180 ~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~--~~~~~~lv~~~~~--~~~---~~~~~~~~-~~~-~~i~givlnk~ 247 (295)
T 1ls1_A 180 ARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMT--GQE---ALSVARAF-DEK-VGVTGLVLTKL 247 (295)
T ss_dssp TCCEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGG--THH---HHHHHHHH-HHH-TCCCEEEEECG
T ss_pred CCCEEEEeCCCCccc---cHHHHHHHHHHhhhc--CCCEEEEEEeCCC--cHH---HHHHHHHH-hhc-CCCCEEEEECC
Confidence 346999999986533 233344444433322 4688889999862 222 33333332 111 13456899999
Q ss_pred CCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeC
Q 036158 148 DELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDN 185 (225)
Q Consensus 148 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (225)
|..... ..+.++....+.++.++..
T Consensus 248 d~~~~~-------------g~~~~~~~~~~~pi~~i~~ 272 (295)
T 1ls1_A 248 DGDARG-------------GAALSARHVTGKPIYFAGV 272 (295)
T ss_dssp GGCSSC-------------HHHHHHHHHHCCCEEEEC-
T ss_pred CCCccH-------------HHHHHHHHHHCcCEEEEeC
Confidence 964322 1134556666777666543
No 240
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.66 E-value=2.8e-06 Score=63.83 Aligned_cols=27 Identities=37% Similarity=0.752 Sum_probs=22.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
.+...|+|+|++|+|||||++.|++..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 345678999999999999999998654
No 241
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.58 E-value=2.9e-05 Score=57.40 Aligned_cols=24 Identities=21% Similarity=0.506 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 20 RNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
.+++++|++|+|||||++.|.|..
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998764
No 242
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.56 E-value=2.8e-05 Score=58.39 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=20.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 19 ERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
...++|+|++|+|||||++.|.+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 356899999999999999999874
No 243
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.54 E-value=0.00011 Score=58.21 Aligned_cols=104 Identities=12% Similarity=0.166 Sum_probs=58.0
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158 73 VIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED 152 (225)
Q Consensus 73 liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~ 152 (225)
+-+.||+-. +..+++.. ....+|+++.|+|+..+.+.....+- ++++ .+|.++|+||+|+...
T Consensus 3 i~w~PGhm~------ka~~~~~~----~l~~aDvVl~VvDAr~p~~~~~~~l~----~~l~---~kp~ilVlNK~DL~~~ 65 (282)
T 1puj_A 3 IQWFPGHMA------KARREVTE----KLKLIDIVYELVDARIPMSSRNPMIE----DILK---NKPRIMLLNKADKADA 65 (282)
T ss_dssp ------CTT------HHHHHHHH----HGGGCSEEEEEEETTSTTTTSCHHHH----HHCS---SSCEEEEEECGGGSCH
T ss_pred CcCCchHHH------HHHHHHHH----HHhhCCEEEEEEeCCCCCccCCHHHH----HHHC---CCCEEEEEECcccCCH
Confidence 445788742 23333433 44456999999999866655432222 2223 3899999999998753
Q ss_pred CcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158 153 NDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ 210 (225)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~ 210 (225)
. .. +. |.+..+..+..++.+ |+.++.++++|++.+.+++.+
T Consensus 66 ~--~~----~~-----~~~~~~~~g~~~i~i------SA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 66 A--VT----QQ-----WKEHFENQGIRSLSI------NSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp H--HH----HH-----HHHHHHTTTCCEEEC------CTTTCTTGGGHHHHHHHHHHH
T ss_pred H--HH----HH-----HHHHHHhcCCcEEEE------ECCCcccHHHHHHHHHHHHHH
Confidence 1 11 11 344444444444433 334557888888888777653
No 244
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.52 E-value=0.00014 Score=58.16 Aligned_cols=106 Identities=13% Similarity=0.077 Sum_probs=60.5
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccccEEEEEec
Q 036158 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRF-SEEEGAAIHILESLFGKKISDYMIVVFTG 146 (225)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~vv~~k 146 (225)
+..+.+||| ...+. .....++.++|++|+|+|++++. +... +-+++..... ...|+++|+||
T Consensus 62 ~~~~~iwD~--qer~~-----------~l~~~~~~~ad~vilV~D~~~~~~s~~~--l~~~l~~~~~--~~~piilv~NK 124 (301)
T 1u0l_A 62 TGSGVIENV--LHRKN-----------LLTKPHVANVDQVILVVTVKMPETSTYI--IDKFLVLAEK--NELETVMVINK 124 (301)
T ss_dssp SSSEEEEEE--CCCSC-----------EETTTTEESCCEEEEEECSSTTCCCHHH--HHHHHHHHHH--TTCEEEEEECC
T ss_pred CCeEEEEEE--ccccc-----------eeeccccccCCEEEEEEeCCCCCCCHHH--HHHHHHHHHH--CCCCEEEEEeH
Confidence 347999999 33221 11224677899999999998554 3322 2223322211 24799999999
Q ss_pred CCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHH
Q 036158 147 GDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVN 205 (225)
Q Consensus 147 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~ 205 (225)
+|+.... .+ .+ ..+..+..+..+ .....||+++.++++++..+.
T Consensus 125 ~DL~~~~--~v----~~-----~~~~~~~~~~~~----~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 125 MDLYDED--DL----RK-----VRELEEIYSGLY----PIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp GGGCCHH--HH----HH-----HHHHHHHHTTTS----CEEECCTTTCTTHHHHHHHHS
T ss_pred HHcCCch--hH----HH-----HHHHHHHHhhhC----cEEEEECCCCcCHHHHHHHhc
Confidence 9976432 21 11 233333333111 122456677789998887763
No 245
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.47 E-value=5.4e-05 Score=55.84 Aligned_cols=24 Identities=33% Similarity=0.659 Sum_probs=21.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 20 RNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
..++|+|++|||||||++.|.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999998743
No 246
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.46 E-value=0.00045 Score=56.88 Aligned_cols=101 Identities=8% Similarity=0.055 Sum_probs=62.3
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158 92 EIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 171 (225)
Q Consensus 92 ~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~ 171 (225)
.+.+.+.......+++++|+|+.+. +..+...+.+.++ .+|+++|+||+|+.+.. ...+...+ .++.
T Consensus 58 ~f~~~l~~i~~~~~~il~VvD~~d~----~~~~~~~l~~~~~---~~p~ilV~NK~DL~~~~-~~~~~~~~-----~l~~ 124 (368)
T 3h2y_A 58 DFLRILNGIGKSDALVVKIVDIFDF----NGSWLPGLHRFVG---NNKVLLVGNKADLIPKS-VKHDKVKH-----WMRY 124 (368)
T ss_dssp HHHHHHHHHHHSCCEEEEEEETTSH----HHHCCTTHHHHSS---SSCEEEEEECGGGSCTT-SCHHHHHH-----HHHH
T ss_pred HHHHHHHHHhccCcEEEEEEECCCC----cccHHHHHHHHhC---CCcEEEEEEChhcCCcc-cCHHHHHH-----HHHH
Confidence 3445555555577899999999742 2334455566554 37999999999987543 11122111 1344
Q ss_pred HHHHcCCcE-EEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 172 ILQLCDNRC-VLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 172 ~~~~~~~~~-~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
..+..+.+. .. ...||.++.++++|++.|.++..
T Consensus 125 ~~~~~g~~~~~v----~~iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 125 SAKQLGLKPEDV----FLISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp HHHHTTCCCSEE----EECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHHcCCCcccE----EEEeCCCCcCHHHHHhhhhhhcc
Confidence 555556521 11 23456777999999999987653
No 247
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.45 E-value=0.00011 Score=55.51 Aligned_cols=108 Identities=6% Similarity=-0.023 Sum_probs=61.3
Q ss_pred HHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc---ccccEEEEEecC-CCCCCCcccHHHHhhhcCC
Q 036158 91 KEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK---ISDYMIVVFTGG-DELEDNDETLEDYLGRECP 166 (225)
Q Consensus 91 ~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~vv~~k~-D~~~~~~~~~~~~~~~~~~ 166 (225)
..++..|..++.++|++|||+|+.++--.+.++.+..+...+.++ ...|++|+.||. |.... ....+..+. +.
T Consensus 113 ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--ms~~EI~e~-L~ 189 (227)
T 3l82_B 113 YSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAHE-LH 189 (227)
T ss_dssp ----CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--CCHHHHHHH-TT
T ss_pred HHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--CCHHHHHHH-cC
Confidence 346667777788889999999986442222344444444444332 246889889996 55332 244444333 11
Q ss_pred chHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 167 KPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
+.. ....++.. +++|.++.++.+-++++.+.+..+
T Consensus 190 --L~~----l~R~W~Iq----~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 190 --LNL----LNHPWLVQ----DTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp --GGG----GCSCEEEE----EEETTTCTTHHHHHHHHTTTTTTC
T ss_pred --CcC----CCCCEEEE----EeECCCCcCHHHHHHHHHHHHHhh
Confidence 112 12334433 345667899999999997665443
No 248
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.44 E-value=7.2e-05 Score=57.78 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
+.-.++|+|++|||||||++.|.|...
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 345689999999999999999998764
No 249
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.40 E-value=7.3e-05 Score=56.41 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=22.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
.+.-.++|+|++|||||||++.|.|..
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 344578999999999999999998754
No 250
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.39 E-value=8e-05 Score=55.77 Aligned_cols=25 Identities=12% Similarity=0.351 Sum_probs=21.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 18 GERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
+.-.|+|+|++|||||||++.|.+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3457999999999999999999875
No 251
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.38 E-value=8.5e-05 Score=56.92 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
-.++|+|++|||||||++.|.|...
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4688999999999999999998753
No 252
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.37 E-value=6.9e-05 Score=55.54 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCc
Q 036158 21 NLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
.++|+|++|||||||++.|.+..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48899999999999999998654
No 253
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.36 E-value=9e-05 Score=55.95 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=23.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
.+...|+|+|++|||||||++.|.+..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998754
No 254
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.36 E-value=7.9e-05 Score=56.80 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=22.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
+.-.++|+|++|||||||++.|.+..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34578999999999999999998754
No 255
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.36 E-value=0.0001 Score=56.97 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=23.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
+.-.++|+|++|||||||++.|.|...
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345789999999999999999998763
No 256
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.35 E-value=9e-05 Score=56.59 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=22.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
.+.-.++|+|++|||||||++.|.+..
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 444679999999999999999998754
No 257
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.34 E-value=0.00011 Score=56.94 Aligned_cols=25 Identities=40% Similarity=0.440 Sum_probs=22.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
-.++++|++|||||||++.|.|...
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4689999999999999999998753
No 258
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.34 E-value=9.1e-05 Score=61.08 Aligned_cols=101 Identities=11% Similarity=0.055 Sum_probs=60.3
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158 93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 172 (225)
Q Consensus 93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~ 172 (225)
+.+.+.......+++++|+|+.+... .+...+.+.++ .+|+++|+||+|+.+.. ...+...+ .+++.
T Consensus 61 f~~~L~~~~~~~~lil~VvD~~d~~~----s~~~~l~~~l~---~~piilV~NK~DLl~~~-~~~~~~~~-----~l~~~ 127 (369)
T 3ec1_A 61 FLSMLHRIGESKALVVNIVDIFDFNG----SFIPGLPRFAA---DNPILLVGNKADLLPRS-VKYPKLLR-----WMRRM 127 (369)
T ss_dssp HHHHHHHHHHHCCEEEEEEETTCSGG----GCCSSHHHHCT---TSCEEEEEECGGGSCTT-CCHHHHHH-----HHHHH
T ss_pred HHHHHHHhhccCcEEEEEEECCCCCC----chhhHHHHHhC---CCCEEEEEEChhcCCCc-cCHHHHHH-----HHHHH
Confidence 33444444456699999999974432 23333444444 37999999999987653 11121111 13445
Q ss_pred HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158 173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV 209 (225)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~ 209 (225)
.+..+.+.. .....||.++.++++|++.+.++..
T Consensus 128 ~~~~g~~~~---~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 128 AEELGLCPV---DVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp HHTTTCCCS---EEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHHcCCCcc---cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 566665310 1123466778999999999987764
No 259
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.34 E-value=0.00014 Score=53.81 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=22.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 18 GERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
+...|+|+|++||||||+++.|.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3467999999999999999999876
No 260
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.33 E-value=0.00011 Score=58.09 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=22.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.-.++|+|++|||||||++.|.|...
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 35689999999999999999998653
No 261
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.32 E-value=0.00011 Score=57.76 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=22.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.-.++|+|++|||||||++.|.|...
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 35689999999999999999998754
No 262
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.32 E-value=0.00012 Score=57.36 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=22.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.-.++|+|++|||||||++.|.|...
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34689999999999999999998754
No 263
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.32 E-value=0.00012 Score=57.54 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=22.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.-.++|+|++|||||||++.|.|...
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35689999999999999999998753
No 264
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.32 E-value=0.00012 Score=56.97 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=22.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.-.++|+|++|||||||++.|.|...
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34689999999999999999998753
No 265
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.32 E-value=0.00011 Score=55.87 Aligned_cols=25 Identities=20% Similarity=0.208 Sum_probs=22.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
-.++|+|++|||||||++.|.|...
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4688999999999999999998753
No 266
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.31 E-value=0.00012 Score=56.20 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=22.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.-.++|+|++|||||||++.|.|...
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 34689999999999999999998753
No 267
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.30 E-value=0.00022 Score=53.62 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=25.7
Q ss_pred CCCCCCCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 12 PTSPSNGERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 12 ~~~~~~~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
+.....+...|+|+|.+||||||+.+.|.+.
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3444556678999999999999999999875
No 268
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.29 E-value=0.00013 Score=57.24 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=22.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.-.++|+|++|||||||++.|.|...
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 35689999999999999999998753
No 269
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.29 E-value=0.00014 Score=56.37 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=22.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.-.++|+|++|+|||||++.|.|...
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34689999999999999999998753
No 270
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.28 E-value=0.00023 Score=55.15 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=23.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
+.-.++|+|++|||||||++.|.|...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 445789999999999999999998754
No 271
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.28 E-value=0.00013 Score=53.28 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=19.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhC
Q 036158 19 ERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
.-.++++|++|||||||++.+.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 35689999999999999997653
No 272
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.27 E-value=0.00014 Score=56.83 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=22.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.-.++|+|++|||||||++.|.|...
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34689999999999999999998753
No 273
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.27 E-value=0.00015 Score=56.55 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 19 ERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
.-.++|+|++|+|||||++.|.|.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999996
No 274
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.27 E-value=0.00014 Score=56.56 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=22.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
-.++|+|++|+|||||++.|.|...
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4689999999999999999998753
No 275
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.27 E-value=0.00014 Score=56.93 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=22.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
+.-.++|+|++|||||||++.|.|..
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34578999999999999999999865
No 276
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.26 E-value=0.00013 Score=55.01 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 18 GERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
+...|+|+|++|||||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4467999999999999999999874
No 277
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.26 E-value=0.0023 Score=47.61 Aligned_cols=69 Identities=7% Similarity=-0.015 Sum_probs=41.3
Q ss_pred CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 036158 68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGG 147 (225)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~ 147 (225)
...++|+|||+... . .....+. .+|.+++++..+ ..+......++.+.+........++.+|+|+.
T Consensus 75 ~yD~viiD~~~~~~-----~----~~~~~l~----~ad~viiv~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS-----V----ITSAAVM----VSDLVIIPVTPS-PLDFSAAGSVVTVLEAQAYSRKVEARFLITRK 140 (206)
T ss_dssp TSSEEEEECCSSSS-----H----HHHHHHH----HCSEEEEEECSC-TTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred CCCEEEEECCCCCC-----H----HHHHHHH----HCCEEEEEecCC-HHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 35789999998541 1 1112222 248999999887 43434455566665532112234668999999
Q ss_pred CCC
Q 036158 148 DEL 150 (225)
Q Consensus 148 D~~ 150 (225)
+..
T Consensus 141 ~~~ 143 (206)
T 4dzz_A 141 IEM 143 (206)
T ss_dssp CTT
T ss_pred CCC
Confidence 843
No 278
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.26 E-value=0.00014 Score=57.01 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=23.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
.+.-.++|+|++|||||||++.|.+..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 345679999999999999999998753
No 279
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.25 E-value=0.00015 Score=56.99 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=21.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 19 ERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
.-.++|+|++|||||||++.|.|.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999996
No 280
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.25 E-value=0.00016 Score=57.10 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=23.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
+.-.++|+|++|||||||++.|.|...
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345689999999999999999998753
No 281
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.25 E-value=0.00016 Score=57.35 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.-.++|+|++|||||||++.|.|...
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34689999999999999999998754
No 282
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.24 E-value=0.00016 Score=52.30 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
+.-.++|+|++|+|||||++.|.|..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34579999999999999999998765
No 283
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.23 E-value=0.00017 Score=56.71 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=23.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
+.-.++|+|++|||||||++.|.|...
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 345789999999999999999998753
No 284
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.22 E-value=0.00017 Score=56.29 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=22.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.-.++|+|++|||||||++.|.|...
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34689999999999999999998754
No 285
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.22 E-value=0.00012 Score=55.53 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=21.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCC
Q 036158 20 RNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
-.++|+|++|||||||++.|.|.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999987
No 286
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.21 E-value=0.00019 Score=54.23 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
+...|+|+|++||||||+++.|.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34578999999999999999998654
No 287
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.16 E-value=0.00022 Score=55.95 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=21.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 20 RNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
-.++|+|++|+|||||++.|.|..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999875
No 288
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.15 E-value=0.00023 Score=53.29 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=21.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
...|+|+|++||||||+++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999998654
No 289
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.14 E-value=0.0002 Score=57.37 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 18 GERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
+.-.++|+|++|+|||||++.|.|.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 4467999999999999999999864
No 290
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.10 E-value=0.00026 Score=58.00 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=22.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.-.++|+|++|||||||++.|.|...
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCC
Confidence 34689999999999999999999764
No 291
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.10 E-value=0.00019 Score=57.56 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=23.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
+.-.++|+|++|||||||++.|.|...
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 345789999999999999999998653
No 292
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.08 E-value=0.00021 Score=53.23 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCc
Q 036158 21 NLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
.++++|++|+|||||++.|.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58999999999999999998754
No 293
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.07 E-value=0.00029 Score=56.68 Aligned_cols=28 Identities=21% Similarity=0.114 Sum_probs=24.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
..+...|+|+|++|||||||++.|.+.-
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 3556789999999999999999998754
No 294
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.07 E-value=0.00018 Score=53.48 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 036158 22 LVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 22 i~v~G~~g~GKSSlin~l~~~ 42 (225)
|+|+|++|+|||||++.|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 889999999999999999854
No 295
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.07 E-value=0.00022 Score=54.59 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=16.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHh-CCc
Q 036158 18 GERNLVLVGRTGNGKSATANSIL-GKR 43 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~-~~~ 43 (225)
+...|+|+|++||||||+++.|. +..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34578999999999999999999 753
No 296
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.07 E-value=0.00034 Score=52.49 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=21.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
.....|+|+|++||||||+.+.|...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34467999999999999999998743
No 297
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.07 E-value=0.0003 Score=57.56 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=22.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.-.++|+|++|||||||++.|.|...
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34688999999999999999998764
No 298
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.06 E-value=0.00034 Score=55.66 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=22.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.-.++|+|++|+|||||++.|.|...
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 45689999999999999999998754
No 299
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.05 E-value=0.00032 Score=57.57 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=23.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
+.-.++|+|++|||||||++.|.|...
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 345689999999999999999998764
No 300
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.04 E-value=0.00029 Score=57.75 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=21.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
.-.|+|+|++|||||||+++|++.-
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4489999999999999999998653
No 301
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.04 E-value=0.00033 Score=57.84 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=22.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.-.++|+|++|||||||++.|.|...
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 34689999999999999999998764
No 302
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.04 E-value=0.0003 Score=57.81 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=23.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
+.-.++|+|++|||||||++.|.+.-.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345899999999999999999998653
No 303
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.04 E-value=0.00033 Score=57.40 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.-.++|+|++|||||||++.|.|...
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 34689999999999999999998754
No 304
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.03 E-value=0.00034 Score=57.44 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=22.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.-.++|+|++|||||||++.|.|...
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCC
Confidence 35689999999999999999998764
No 305
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.02 E-value=0.00027 Score=57.39 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=21.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 20 RNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
-.++|+|++|||||||++.|.+.-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999865
No 306
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.02 E-value=0.00032 Score=52.50 Aligned_cols=24 Identities=29% Similarity=0.607 Sum_probs=21.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhC
Q 036158 18 GERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
+...|+|+|++||||||+++.|.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999875
No 307
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.01 E-value=0.00037 Score=50.62 Aligned_cols=23 Identities=39% Similarity=0.657 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCC
Q 036158 20 RNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
..|+|+|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998753
No 308
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.01 E-value=0.00037 Score=57.47 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=22.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
-.++|+|++|||||||++.|.|...
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCC
Confidence 4688999999999999999998764
No 309
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.00 E-value=0.00038 Score=57.38 Aligned_cols=26 Identities=38% Similarity=0.533 Sum_probs=22.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.-.++|+|++|||||||++.|.|...
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC
Confidence 35688999999999999999998754
No 310
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.99 E-value=0.00045 Score=53.45 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=22.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHh---CCcc
Q 036158 19 ERNLVLVGRTGNGKSATANSIL---GKRA 44 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~---~~~~ 44 (225)
...|+|+|++||||||+++.|. |...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 4689999999999999999998 7653
No 311
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.98 E-value=0.00039 Score=53.79 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=22.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
.+...|+|+|++|||||||++.|.+.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999998763
No 312
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.97 E-value=0.00046 Score=50.27 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=20.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhC
Q 036158 18 GERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
+...|+|+|++||||||+.+.|.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 313
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.95 E-value=0.00046 Score=51.01 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q 036158 21 NLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~ 41 (225)
.++|+|++||||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 588999999999999999975
No 314
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.95 E-value=0.00015 Score=53.13 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 20 RNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
..++|+|++|||||||++.|.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998754
No 315
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.94 E-value=0.00045 Score=51.64 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=22.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
.+...|+|+|++||||||+.+.|.+.-
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345789999999999999999987543
No 316
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.92 E-value=0.00046 Score=57.23 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=23.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
+.-.++|+|++|||||||++.|.|...
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 345689999999999999999998653
No 317
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.92 E-value=0.0004 Score=59.68 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=21.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
...++|+|++|||||||+|+|++.-
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3469999999999999999999754
No 318
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.91 E-value=0.00043 Score=57.12 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=22.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
.+.-.|+|+|++|||||||++.|.+..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345679999999999999999998753
No 319
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.90 E-value=0.00031 Score=57.34 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=22.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.-.++|+|++|||||||++.|.|...
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCccHHHHHHHHHcCCC
Confidence 34689999999999999999998764
No 320
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.89 E-value=0.00071 Score=52.62 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=23.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHh---CCc
Q 036158 17 NGERNLVLVGRTGNGKSATANSIL---GKR 43 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~---~~~ 43 (225)
.+...|+|+|++||||||+++.|. |..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~ 54 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWR 54 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 345789999999999999999998 654
No 321
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.88 E-value=0.00058 Score=50.13 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=21.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 19 ERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
...++++|++|+|||||++.|++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 367999999999999999999864
No 322
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.87 E-value=0.00049 Score=57.63 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=22.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
+.-.|+|+|++|||||||+++|++.-
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 34579999999999999999998743
No 323
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.87 E-value=0.0004 Score=52.77 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 19 ERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
.-.++|+|++|+|||||++.|.+.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999873
No 324
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.86 E-value=0.00076 Score=53.39 Aligned_cols=106 Identities=6% Similarity=-0.004 Sum_probs=59.1
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc---ccccEEEEEecC-CCCCCCcccHHHHhhhcCCch
Q 036158 93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK---ISDYMIVVFTGG-DELEDNDETLEDYLGRECPKP 168 (225)
Q Consensus 93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~vv~~k~-D~~~~~~~~~~~~~~~~~~~~ 168 (225)
++..+..++.+.|++|||+|+.++-..+.++.+..|...+.++ ...|++|..||. |..... ...+..+. +.
T Consensus 200 lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Am--s~~EI~e~-L~-- 274 (312)
T 3l2o_B 200 VIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRM--PCFYLAHE-LH-- 274 (312)
T ss_dssp CCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBC--CHHHHHHH-TT--
T ss_pred HHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCC--CHHHHHHH-cC--
Confidence 4455556677789999999986432212333333333333222 236889888975 654332 44443333 11
Q ss_pred HHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158 169 LKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN 211 (225)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~ 211 (225)
+..+ ...++.. +++|.++.|+.+-++++.+.+..+
T Consensus 275 L~~l----~r~W~Iq----~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 275 LNLL----NHPWLVQ----DTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp GGGG----CSCEEEE----EEETTTCTTHHHHHHHHHHHSCC-
T ss_pred CccC----CCcEEEE----ecccCCCcCHHHHHHHHHHHHHhh
Confidence 1111 2334433 345667899999999998776543
No 325
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.86 E-value=0.0006 Score=49.26 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=18.7
Q ss_pred eeEEEEcCCCCCHHHHHHHH
Q 036158 20 RNLVLVGRTGNGKSATANSI 39 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l 39 (225)
+.|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999999
No 326
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.86 E-value=0.00058 Score=54.77 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=22.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
.....|+|+|++|||||||++.|.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 44578999999999999999998864
No 327
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.85 E-value=0.00063 Score=54.90 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=22.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
....+.|+|+|++|||||||++.|.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999888643
No 328
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.84 E-value=0.0007 Score=51.40 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhC
Q 036158 20 RNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~ 41 (225)
..|+|+|++||||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 329
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.83 E-value=0.0009 Score=50.20 Aligned_cols=27 Identities=19% Similarity=0.307 Sum_probs=22.7
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHHhC
Q 036158 15 PSNGERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 15 ~~~~~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
+......|+|.|.+||||||+.+.|..
T Consensus 6 ~~~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 6 DKKKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CCBCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hhhcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 344567899999999999999999864
No 330
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.83 E-value=0.0007 Score=51.85 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=23.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
.+...|+|.|.+||||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45678999999999999999999865
No 331
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.82 E-value=0.00074 Score=50.59 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhC
Q 036158 20 RNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~ 41 (225)
..|+|+|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 332
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.82 E-value=0.00065 Score=52.26 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHh
Q 036158 18 GERNLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~ 40 (225)
+.-.++|+|++|||||||++.|.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 34568999999999999999887
No 333
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.81 E-value=0.00031 Score=57.50 Aligned_cols=26 Identities=23% Similarity=0.403 Sum_probs=22.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.-.++|+|++|||||||++.|.|...
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34689999999999999999998764
No 334
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.79 E-value=0.00041 Score=56.98 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=22.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
.-+++|+|++|||||||++.|.|..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998764
No 335
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.79 E-value=0.00051 Score=55.40 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=22.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
+...++|+|..|||||||+|.|++..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 35678999999999999999999764
No 336
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.79 E-value=0.00049 Score=50.47 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=21.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
...++++|++|+|||||++++.+.-
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999988644
No 337
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.77 E-value=0.00094 Score=49.84 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=21.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
.....|+|+|.+||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999998853
No 338
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.76 E-value=0.0008 Score=48.61 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhC
Q 036158 20 RNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~ 41 (225)
..|+|.|.+||||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998863
No 339
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.75 E-value=0.0009 Score=53.25 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=23.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
......|+|+|++|||||||.+.|.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 455688999999999999999988753
No 340
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.73 E-value=0.00081 Score=50.24 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhC
Q 036158 20 RNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~ 41 (225)
.+|+|+|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999875
No 341
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.72 E-value=0.00061 Score=48.63 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
+...++++|++|+|||||++++.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 44578999999999999999998654
No 342
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.72 E-value=0.00089 Score=50.11 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=21.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
.....|+|+|++||||||+++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999999875
No 343
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.71 E-value=0.0056 Score=48.88 Aligned_cols=86 Identities=17% Similarity=0.196 Sum_probs=50.2
Q ss_pred cCCCccEEEEEEeCCCCC-CHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158 100 TKDGIHAVLVVFSVRNRF-SEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 177 (225)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (225)
++.++|++++|+|+.++. +... .+++..+.. ...|+++|+||+|+.... .++ ...+ +.+..+..+
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-----~~~~~ilV~NK~DL~~~~--~v~-~~~~-----~~~~~~~~g 142 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-----FKVEPVIVFNKIDLLNEE--EKK-ELER-----WISIYRDAG 142 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCCHH--HHH-HHHH-----HHHHHHHTT
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-----CCCCEEEEEEcccCCCcc--ccH-HHHH-----HHHHHHHCC
Confidence 567889999999997543 4432 123333322 237899999999986431 111 1122 344444445
Q ss_pred CcEEEeeCCCccccccHHHHHHHHHHH
Q 036158 178 NRCVLFDNKTKDTAKRTEQVGKLLSLV 204 (225)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i 204 (225)
..++ ..||.++.++++|++.+
T Consensus 143 ~~~~------~~SA~~g~gi~~L~~~l 163 (302)
T 2yv5_A 143 YDVL------KVSAKTGEGIDELVDYL 163 (302)
T ss_dssp CEEE------ECCTTTCTTHHHHHHHT
T ss_pred CeEE------EEECCCCCCHHHHHhhc
Confidence 4332 33455667888887765
No 344
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.71 E-value=0.0012 Score=48.64 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=21.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 18 GERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
...+|+|+|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999988643
No 345
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.70 E-value=0.001 Score=49.69 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=20.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
.+...|+|+|++||||||+.+.|..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3446899999999999999998863
No 346
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.68 E-value=0.0015 Score=48.68 Aligned_cols=27 Identities=15% Similarity=0.375 Sum_probs=22.5
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHHh
Q 036158 14 SPSNGERNLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 14 ~~~~~~~~i~v~G~~g~GKSSlin~l~ 40 (225)
.+......|+|.|.+||||||+.+.|.
T Consensus 10 ~~~~~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 10 FSPDQVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp SCTTTCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 344555789999999999999998886
No 347
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.67 E-value=0.0011 Score=48.71 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHh
Q 036158 18 GERNLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~ 40 (225)
....|+|+|.+||||||+.+.|.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999886
No 348
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.67 E-value=0.001 Score=48.91 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=20.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhC
Q 036158 19 ERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
...|+|.|.+||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 349
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.66 E-value=0.0011 Score=48.20 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhC
Q 036158 20 RNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~ 41 (225)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999875
No 350
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.65 E-value=0.00094 Score=48.93 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=18.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q 036158 21 NLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~ 41 (225)
..+|+|++|+||||++.+|..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999853
No 351
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.00077 Score=57.13 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=22.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
...+++|+|++|||||||++.|.|..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 44689999999999999999998764
No 352
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.63 E-value=0.0013 Score=48.42 Aligned_cols=24 Identities=13% Similarity=0.346 Sum_probs=20.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhC
Q 036158 18 GERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
....|+|+|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998863
No 353
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.62 E-value=0.0011 Score=49.26 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q 036158 21 NLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~ 41 (225)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998864
No 354
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.62 E-value=0.0014 Score=47.78 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhC
Q 036158 20 RNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~ 41 (225)
..|+|.|.+||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999874
No 355
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.61 E-value=0.0011 Score=57.45 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=24.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.+.-.++|+|++|+|||||++.|.|...
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4556799999999999999999999653
No 356
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.60 E-value=0.001 Score=49.63 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhC
Q 036158 19 ERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
...|+|+|.+||||||+.+.|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 357
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.59 E-value=0.014 Score=45.02 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=20.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhC
Q 036158 18 GERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
....|+|.|++|+|||++++++..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999874
No 358
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.59 E-value=0.0015 Score=48.63 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 19 ERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
...|+|.|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999998743
No 359
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.59 E-value=0.0014 Score=47.86 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=20.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 19 ERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
.+.|+++|.+|||||||++.|...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999998853
No 360
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.57 E-value=0.0013 Score=49.65 Aligned_cols=21 Identities=43% Similarity=0.727 Sum_probs=19.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 036158 20 RNLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~ 40 (225)
++|+|+|.+||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999884
No 361
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.56 E-value=0.0019 Score=47.51 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
.+...|+|+|.+||||||+.+.|...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 45678999999999999999988743
No 362
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.024 Score=47.62 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=21.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 18 GERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
+..-|++.|++|+|||+|.+++.+.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3466999999999999999999853
No 363
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.54 E-value=0.0017 Score=47.39 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=20.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHh
Q 036158 17 NGERNLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~ 40 (225)
.....|+++|.+||||||+.+.|.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHH
Confidence 345679999999999999999886
No 364
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.51 E-value=0.0015 Score=49.33 Aligned_cols=21 Identities=43% Similarity=0.694 Sum_probs=19.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 036158 20 RNLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~ 40 (225)
++|+|+|.+||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999885
No 365
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.51 E-value=0.0014 Score=48.13 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhC
Q 036158 20 RNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~ 41 (225)
..|+|.|.+||||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 366
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.0018 Score=56.85 Aligned_cols=29 Identities=34% Similarity=0.412 Sum_probs=24.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCccc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRAF 45 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~ 45 (225)
.+.-.++|+|++|+|||||++.|.|....
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~P 129 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQKP 129 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCC
Confidence 44567999999999999999999997643
No 367
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.51 E-value=0.0016 Score=47.82 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=19.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHh
Q 036158 19 ERNLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~ 40 (225)
...|+++|.+||||||+.+.|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999885
No 368
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.50 E-value=0.0016 Score=49.30 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHh
Q 036158 18 GERNLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~ 40 (225)
..+.|+|+|.+||||||+.+.|.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34789999999999999998875
No 369
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.49 E-value=0.0015 Score=57.07 Aligned_cols=27 Identities=37% Similarity=0.519 Sum_probs=23.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
+.-.++++|++|+|||||++.|.|...
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 345789999999999999999998753
No 370
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.49 E-value=0.0018 Score=48.34 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhC
Q 036158 19 ERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
...|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 371
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.49 E-value=0.0018 Score=56.03 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=23.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.+.-.++|+|++|+|||||++.|.|...
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3446789999999999999999999754
No 372
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.48 E-value=0.0011 Score=52.24 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 036158 22 LVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 22 i~v~G~~g~GKSSlin~l~~~ 42 (225)
++++|++|+|||||+++|.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999864
No 373
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.47 E-value=0.0018 Score=48.08 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=22.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
.....|+|+|.+||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999998754
No 374
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.47 E-value=0.0067 Score=48.31 Aligned_cols=23 Identities=30% Similarity=0.626 Sum_probs=18.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSI 39 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l 39 (225)
.....|+|.|+.|+||||+.-.|
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nL 61 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNL 61 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHH
Confidence 45577888899999999998543
No 375
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.47 E-value=0.0017 Score=47.74 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=19.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHh
Q 036158 19 ERNLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~ 40 (225)
...|+|.|.+||||||+.+.|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999998875
No 376
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.46 E-value=0.0019 Score=47.15 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=20.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhC
Q 036158 18 GERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
+...|+|+|.+||||||+.+.|.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999875
No 377
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.45 E-value=0.002 Score=48.69 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhC
Q 036158 19 ERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
.+.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998864
No 378
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.45 E-value=0.0019 Score=48.48 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhC
Q 036158 18 GERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
....|+|.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999874
No 379
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.45 E-value=0.0012 Score=53.89 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=22.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
+.-+++|+|++|+|||||++.|.+..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999999764
No 380
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.45 E-value=0.0012 Score=56.09 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCC
Q 036158 20 RNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
-.++|+|++|||||||++.|.|.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 56899999999999999998764
No 381
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.45 E-value=0.002 Score=56.23 Aligned_cols=27 Identities=37% Similarity=0.500 Sum_probs=23.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
+.-.++++|++|+|||||++.|.|...
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 445789999999999999999998754
No 382
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.44 E-value=0.002 Score=56.49 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=24.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.+.-.++|+|++|+|||||++.|.|...
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 4556799999999999999999998754
No 383
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.43 E-value=0.0023 Score=50.79 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=21.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhC
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
......|+|.|++||||||+.+.|..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34457899999999999999999863
No 384
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.42 E-value=0.0015 Score=57.23 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=23.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
+.-.++++|++|+|||||++.|.|...
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 345789999999999999999998753
No 385
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.42 E-value=0.002 Score=47.61 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHh
Q 036158 18 GERNLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~ 40 (225)
+...|+|+|.+||||||+.+.|.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 44689999999999999998885
No 386
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.42 E-value=0.0022 Score=55.45 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=22.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
-.++|+|++|||||||++.|.|...
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4688999999999999999999764
No 387
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.41 E-value=0.0016 Score=57.07 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=24.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.+.-.++++|++|+|||||++.|.|...
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 3456899999999999999999998764
No 388
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.40 E-value=0.0013 Score=50.90 Aligned_cols=21 Identities=38% Similarity=0.697 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 036158 22 LVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 22 i~v~G~~g~GKSSlin~l~~~ 42 (225)
++++|++|+|||||+++|.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999864
No 389
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.40 E-value=0.0014 Score=57.25 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=23.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
+.-.++++|++|+|||||++.|.|...
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 345789999999999999999998764
No 390
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.39 E-value=0.0028 Score=48.48 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=22.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
......|+|.|.+||||||+++.|...
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 445688999999999999999988743
No 391
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.38 E-value=0.0024 Score=49.35 Aligned_cols=24 Identities=17% Similarity=0.448 Sum_probs=21.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHh
Q 036158 17 NGERNLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~ 40 (225)
...++|+|+|++||||||+.+.|.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 456899999999999999999886
No 392
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.38 E-value=0.015 Score=45.60 Aligned_cols=23 Identities=26% Similarity=0.536 Sum_probs=20.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhC
Q 036158 19 ERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
...++|.|++|+|||++++++..
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45699999999999999999974
No 393
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.37 E-value=0.03 Score=45.69 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhCC
Q 036158 21 NLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~ 42 (225)
.++|.|++|+||||+++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998854
No 394
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.35 E-value=0.0018 Score=56.62 Aligned_cols=27 Identities=30% Similarity=0.311 Sum_probs=23.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
+.-.++++|++|+|||||++.|.|...
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 345789999999999999999998754
No 395
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.34 E-value=0.0027 Score=54.87 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
.-.++|+|++|+|||||++.|.|...
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34689999999999999999999764
No 396
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.34 E-value=0.0022 Score=46.20 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhC
Q 036158 20 RNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~ 41 (225)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999988853
No 397
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.34 E-value=0.002 Score=49.00 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHh
Q 036158 19 ERNLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~ 40 (225)
...|+|+|.+||||||+.+.|.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999885
No 398
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.34 E-value=0.0021 Score=45.76 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=18.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 036158 20 RNLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~ 40 (225)
...+|+|++|+||||++.+|.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 356888999999999998875
No 399
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.026 Score=47.17 Aligned_cols=24 Identities=25% Similarity=0.563 Sum_probs=21.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 19 ERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
..-|++.|++|+|||+|.+++.+.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHH
Confidence 356999999999999999999854
No 400
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.027 Score=47.16 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=20.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 19 ERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
..-|++.|++|+|||++.+++.+.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345999999999999999999853
No 401
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.30 E-value=0.0029 Score=55.46 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=22.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
-.++|+|++|+|||||++.|.|...
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4689999999999999999999764
No 402
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.28 E-value=0.0022 Score=48.29 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=18.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 036158 20 RNLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~ 40 (225)
++|+|+|.+||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999998885
No 403
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.28 E-value=0.0017 Score=54.73 Aligned_cols=27 Identities=19% Similarity=0.200 Sum_probs=23.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
.+.-+++|+|++|+|||||++.|.+..
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 344579999999999999999999765
No 404
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.27 E-value=0.0021 Score=52.82 Aligned_cols=20 Identities=35% Similarity=0.419 Sum_probs=17.9
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 036158 21 NLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~ 40 (225)
-.+|+|++|+||||++++|.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 46699999999999999976
No 405
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.27 E-value=0.0025 Score=47.07 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q 036158 21 NLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~ 41 (225)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 406
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.26 E-value=0.0025 Score=48.34 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=19.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHh
Q 036158 19 ERNLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~ 40 (225)
...|+|+|.+||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999998875
No 407
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.25 E-value=0.0019 Score=48.97 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhC
Q 036158 20 RNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~ 41 (225)
-.++|+|++|+|||||++.|.+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999874
No 408
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.25 E-value=0.0029 Score=48.39 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=21.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHh
Q 036158 16 SNGERNLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~ 40 (225)
.....+|+|+|.+||||||+.+.|.
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3445789999999999999998885
No 409
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.25 E-value=0.0051 Score=48.56 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=21.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHh
Q 036158 17 NGERNLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~ 40 (225)
.....|+|.|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999886
No 410
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.24 E-value=0.0026 Score=46.78 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q 036158 21 NLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~ 41 (225)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 411
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.22 E-value=0.0024 Score=46.40 Aligned_cols=21 Identities=38% Similarity=0.651 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q 036158 21 NLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~ 41 (225)
+|+|+|.+||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998863
No 412
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.036 Score=45.97 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=20.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 19 ERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
..-|++.|++|+|||+|.+++.+.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 356999999999999999999854
No 413
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.21 E-value=0.0019 Score=50.75 Aligned_cols=21 Identities=38% Similarity=0.697 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 036158 22 LVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 22 i~v~G~~g~GKSSlin~l~~~ 42 (225)
++|+|++|+|||||+++|.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999864
No 414
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.21 E-value=0.0037 Score=45.88 Aligned_cols=21 Identities=24% Similarity=0.548 Sum_probs=19.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 036158 20 RNLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~ 40 (225)
..|+|.|.+||||||+.+.|.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999998885
No 415
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.18 E-value=0.14 Score=41.13 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=21.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 18 GERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
+...|+|.|++|+|||+|.+++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 3467999999999999999999853
No 416
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.18 E-value=0.003 Score=48.56 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHh
Q 036158 18 GERNLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~ 40 (225)
..+.|+|.|++||||||+.+.|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999886
No 417
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.17 E-value=0.003 Score=48.95 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=20.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
...+.|+|.|.+||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999988854
No 418
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.16 E-value=0.0012 Score=49.62 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q 036158 21 NLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~ 41 (225)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 419
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.16 E-value=0.003 Score=49.08 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q 036158 21 NLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~ 41 (225)
.|+|+|++||||||+.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998853
No 420
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.15 E-value=0.0022 Score=46.79 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=15.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHh
Q 036158 19 ERNLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~ 40 (225)
...|+|.|.+||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999885
No 421
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.15 E-value=0.003 Score=46.70 Aligned_cols=23 Identities=17% Similarity=0.508 Sum_probs=20.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhC
Q 036158 19 ERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
...|+|.|.+||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999988853
No 422
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.14 E-value=0.0049 Score=48.18 Aligned_cols=79 Identities=16% Similarity=0.157 Sum_probs=47.6
Q ss_pred CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcE
Q 036158 101 KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 180 (225)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (225)
...+|+++.|+|+..+.+..... ++ + . .+|.++|+||+|+.... ..+ . |.+.++..+.++
T Consensus 19 l~~~D~vl~VvDar~P~~~~~~~-l~-l---l----~k~~iivlNK~DL~~~~--~~~----~-----~~~~~~~~g~~v 78 (262)
T 3cnl_A 19 LRLVNTVVEVRDARAPFATSAYG-VD-F---S----RKETIILLNKVDIADEK--TTK----K-----WVEFFKKQGKRV 78 (262)
T ss_dssp HTTCSEEEEEEETTSTTTTSCTT-SC-C---T----TSEEEEEEECGGGSCHH--HHH----H-----HHHHHHHTTCCE
T ss_pred HhhCCEEEEEeeCCCCCcCcChH-HH-h---c----CCCcEEEEECccCCCHH--HHH----H-----HHHHHHHcCCeE
Confidence 34669999999997665543211 12 1 1 28999999999987531 222 1 344444445443
Q ss_pred EEeeCCCccccccHHHHHHHHHHHHH
Q 036158 181 VLFDNKTKDTAKRTEQVGKLLSLVNS 206 (225)
Q Consensus 181 ~~~~~~~~~~~~~~~~v~~l~~~i~~ 206 (225)
.+ |+.++.++++|++.+.+
T Consensus 79 -~i------Sa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 79 -IT------THKGEPRKVLLKKLSFD 97 (262)
T ss_dssp -EE------CCTTSCHHHHHHHHCCC
T ss_pred -EE------ECCCCcCHHHHHHHHHH
Confidence 33 34455778888777643
No 423
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.13 E-value=0.0033 Score=46.79 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=21.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
.-+..|+|+|.+||||||+.+.|..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3468899999999999999988863
No 424
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.13 E-value=0.0025 Score=49.45 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=21.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhC
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
......|+++|.+||||||+.+.|..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34457899999999999999998864
No 425
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.13 E-value=0.0022 Score=51.91 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 20 RNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
..++++|++|+|||||++.|.+.-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 458999999999999999998643
No 426
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.0037 Score=54.79 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCccc
Q 036158 21 NLVLVGRTGNGKSATANSILGKRAF 45 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~~~ 45 (225)
.++|+|++|+|||||++.|.|....
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 4799999999999999999997643
No 427
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.12 E-value=0.003 Score=46.24 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=18.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 036158 20 RNLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~ 40 (225)
+.|+|+|.+||||||+.+.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 469999999999999998875
No 428
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.11 E-value=0.0032 Score=47.83 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=18.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 036158 20 RNLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~ 40 (225)
+.|+|.|.+||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999998885
No 429
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.10 E-value=0.0024 Score=61.00 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=23.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
+.-+|+++|++|||||||++.|++-..
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCcc
Confidence 445799999999999999999998653
No 430
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.10 E-value=0.0023 Score=50.82 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=20.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 19 ERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
.-.++|+|++|+|||||++.|.+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 346889999999999999988754
No 431
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.09 E-value=0.0031 Score=45.51 Aligned_cols=21 Identities=19% Similarity=0.463 Sum_probs=18.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 036158 20 RNLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~ 40 (225)
..|+|.|.+||||||+.+.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 469999999999999998885
No 432
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.029 Score=47.29 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=21.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 18 GERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
+..-|++.|++|+|||+|.+++.+.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc
Confidence 4467999999999999999999853
No 433
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.07 E-value=0.0039 Score=48.61 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhC
Q 036158 19 ERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
...|+++|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 36799999999999999998863
No 434
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.06 E-value=0.0034 Score=48.76 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhC
Q 036158 19 ERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
...|+|+|.+||||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 435
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.04 E-value=0.0043 Score=45.09 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=20.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 19 ERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
...++|.|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999988753
No 436
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.02 E-value=0.071 Score=39.40 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q 036158 21 NLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~ 41 (225)
.++|.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999988874
No 437
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.02 E-value=0.0045 Score=46.51 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 18 GERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
....|+++|.+||||||+.+.|.+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999988743
No 438
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.98 E-value=0.11 Score=47.89 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=19.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHH
Q 036158 19 ERNLVLVGRTGNGKSATANSI 39 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l 39 (225)
.-.++|+|++|+||||+++.+
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 456899999999999999998
No 439
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.96 E-value=0.0037 Score=51.56 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=21.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 18 GERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
+.-.++++|++|+|||||++.|.+.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3457999999999999999998853
No 440
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.95 E-value=0.0063 Score=46.19 Aligned_cols=26 Identities=15% Similarity=0.419 Sum_probs=20.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhC
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
..+...|.|+|++||||+|....|..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34455677899999999999988764
No 441
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.90 E-value=0.0048 Score=44.46 Aligned_cols=21 Identities=43% Similarity=0.651 Sum_probs=18.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 036158 20 RNLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~ 40 (225)
-+|+|.|.+||||||+.+.|.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 469999999999999998875
No 442
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.90 E-value=0.0034 Score=47.13 Aligned_cols=23 Identities=17% Similarity=-0.025 Sum_probs=20.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhC
Q 036158 19 ERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
.-.++++|++|+|||||+..|.+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999986
No 443
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.88 E-value=0.0045 Score=46.75 Aligned_cols=21 Identities=38% Similarity=0.691 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 036158 20 RNLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~ 40 (225)
+.|+|+|.+||||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999998885
No 444
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.88 E-value=0.0051 Score=46.31 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhC
Q 036158 20 RNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~ 41 (225)
++|+++|++||||+|....|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988764
No 445
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.86 E-value=0.0036 Score=47.81 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=20.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 19 ERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
.-.++|+|++|+|||||+..|.+.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 356899999999999999999863
No 446
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.86 E-value=0.00047 Score=52.86 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhCCc
Q 036158 21 NLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
.++|+|++|||||||+++|.+..
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 35789999999999999998754
No 447
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.83 E-value=0.0025 Score=58.60 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=22.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 20 RNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
-+++|+|++|+|||||++.|.|...
T Consensus 700 eivaIiGpNGSGKSTLLklLaGll~ 724 (986)
T 2iw3_A 700 SRIAVIGPNGAGKSTLINVLTGELL 724 (986)
T ss_dssp CEEEECSCCCHHHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4789999999999999999998653
No 448
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.83 E-value=0.024 Score=47.56 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=21.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 18 GERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
+..-|++.|++|+|||+|.+++.+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH
Confidence 3467999999999999999999854
No 449
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.81 E-value=0.006 Score=47.22 Aligned_cols=23 Identities=35% Similarity=0.718 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCC
Q 036158 20 RNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
..+++.|++|+||||++++|.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 45999999999999999999753
No 450
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.79 E-value=0.0064 Score=46.54 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=21.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHHhC
Q 036158 16 SNGERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 16 ~~~~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
......|+|+|.+||||||+.+.|.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 44557899999999999999988864
No 451
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.76 E-value=0.0057 Score=58.44 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=23.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
+.-.++|+|++|||||||++.|+|...
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred CCcEEEEEecCCCcHHHHHHHhccccc
Confidence 345799999999999999999998764
No 452
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.73 E-value=0.047 Score=44.99 Aligned_cols=23 Identities=39% Similarity=0.684 Sum_probs=20.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhC
Q 036158 19 ERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
...|+|.|++|+|||++++++..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999963
No 453
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.73 E-value=0.0065 Score=45.11 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCC
Q 036158 20 RNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
..+++.|++|+|||+|+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999988753
No 454
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.73 E-value=0.0068 Score=48.60 Aligned_cols=24 Identities=29% Similarity=0.446 Sum_probs=20.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 19 ERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
...|+|+|+||||||||...|...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 456899999999999999988643
No 455
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.71 E-value=0.0059 Score=45.78 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=17.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHh
Q 036158 20 RNLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~ 40 (225)
...+|+|++|+||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 456788999999999998864
No 456
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.71 E-value=0.0067 Score=45.99 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=21.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 18 GERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
....++|.|++|+|||++++.+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999988743
No 457
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.69 E-value=0.0041 Score=49.40 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=17.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhC
Q 036158 18 GERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
+.+.|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999988753
No 458
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.65 E-value=0.0079 Score=42.35 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=21.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
...|++.|++|+|||++..+|....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3569999999999999999997543
No 459
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.65 E-value=0.0054 Score=44.48 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=20.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 19 ERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
...++|.|++|+|||+++..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999888643
No 460
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.65 E-value=0.0088 Score=48.41 Aligned_cols=24 Identities=38% Similarity=0.511 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 20 RNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
..|+|+|+||||||||...|...-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 479999999999999999987543
No 461
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.64 E-value=0.0042 Score=55.16 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=18.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHHh
Q 036158 19 ERNLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~ 40 (225)
.-.++|+|++|||||||++.++
T Consensus 348 Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 348 GTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TSEEEEECSTTSSHHHHHTTTH
T ss_pred CCEEEEEeeCCCCHHHHHHHHH
Confidence 3467899999999999998764
No 462
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.62 E-value=0.0061 Score=58.04 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=23.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
+.-.++++|++|||||||++.|.|...
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345789999999999999999998764
No 463
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=95.59 E-value=0.0023 Score=53.29 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=18.4
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 036158 21 NLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~ 40 (225)
.++|+|++|+|||||+++|.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 78999999999999998874
No 464
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.56 E-value=0.0053 Score=56.50 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=21.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
.-.++|+|++|+|||||++.|.+..
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999543
No 465
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.54 E-value=0.011 Score=46.97 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=21.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
.+...++++|++|+|||++.++|.+.
T Consensus 45 ~~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 45 RPIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SCSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHH
Confidence 34457999999999999999988754
No 466
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.50 E-value=0.006 Score=47.94 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=20.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhC
Q 036158 18 GERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
..-.++|+|++|+|||||+..|.+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 445789999999999999988875
No 467
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.48 E-value=0.013 Score=46.46 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=20.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 18 GERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
...-+++.|++|+|||++.+++...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456777899999999999998743
No 468
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.46 E-value=0.011 Score=44.21 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=20.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 19 ERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
...|+|+|+||+|||||...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999998754
No 469
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.45 E-value=0.01 Score=47.05 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=20.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
.....++|.|++|+|||++.+++..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999987653
No 470
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.43 E-value=0.009 Score=47.32 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHhC
Q 036158 20 RNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~ 41 (225)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998874
No 471
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.43 E-value=0.01 Score=48.67 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHH
Q 036158 17 NGERNLVLVGRTGNGKSATANSI 39 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l 39 (225)
....+|+|+|.+||||||++..|
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 55789999999999999999875
No 472
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.41 E-value=0.0044 Score=53.68 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=22.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
+...|+|+|.+||||||+++.|.+.-
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 45789999999999999999998653
No 473
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.41 E-value=0.0092 Score=44.35 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q 036158 21 NLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~ 41 (225)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999988853
No 474
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.41 E-value=0.069 Score=48.26 Aligned_cols=27 Identities=26% Similarity=0.505 Sum_probs=22.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
.+..-|+|.|++|+|||+|.+++.+..
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 344679999999999999999998643
No 475
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.39 E-value=0.068 Score=42.71 Aligned_cols=50 Identities=18% Similarity=0.062 Sum_probs=31.6
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158 100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED 152 (225)
Q Consensus 100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~ 152 (225)
...++|.+++|+++..+..... .+-+.+.... ...+++++|+||+|+..+
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~--~~~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVE--ANDIQPIICITKMDLIED 132 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHH--TTTCEEEEEEECGGGCCC
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHH--HCCCCEEEEEECCccCch
Confidence 3457899999999974443333 2222332211 123788999999998765
No 476
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.39 E-value=0.0099 Score=46.94 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=20.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhC
Q 036158 19 ERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
...+++.|++|+|||++++++.+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 46799999999999999999975
No 477
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.35 E-value=0.8 Score=36.28 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=16.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q 036158 21 NLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~ 41 (225)
-+++.|++|+|||++++++..
T Consensus 50 ~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHH
T ss_pred EEEeeCcCCCCHHHHHHHHHH
Confidence 355556699999999999863
No 478
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.34 E-value=0.01 Score=45.62 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=21.6
Q ss_pred CCCCCCCCCCceeEEEEcCCCCCHHHHHHHHhC
Q 036158 9 DSKPTSPSNGERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 9 ~~~~~~~~~~~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
+-.+.........|++.|.+||||||+++.|..
T Consensus 17 ~~~~~~~~~~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 17 NLYFQSNAMNAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp ---------CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred ccccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 334445556678899999999999999998863
No 479
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.32 E-value=0.013 Score=46.94 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=19.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhC
Q 036158 19 ERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
...|+|+|+||||||||...|..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 35688999999999999998863
No 480
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.32 E-value=0.0079 Score=42.26 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhCC
Q 036158 20 RNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
..|++.|++|+|||++.+++...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 56999999999999999988754
No 481
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.30 E-value=0.01 Score=48.09 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhC
Q 036158 20 RNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~ 41 (225)
..|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5799999999999999988763
No 482
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.29 E-value=0.0089 Score=56.95 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=23.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158 18 GERNLVLVGRTGNGKSATANSILGKRA 44 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~~~ 44 (225)
+.-+++++|++|+|||||++.|.|...
T Consensus 1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A 1058 KGQTLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp SSSEEEEECSSSTTHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 345789999999999999999998654
No 483
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.29 E-value=0.011 Score=47.92 Aligned_cols=20 Identities=35% Similarity=0.629 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 036158 22 LVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 22 i~v~G~~g~GKSSlin~l~~ 41 (225)
+++.|++|+||||+++.|.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998876
No 484
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.29 E-value=0.0074 Score=48.55 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=18.6
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 036158 21 NLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~ 40 (225)
..+|+|++|+|||||+.+|.
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHH
Confidence 67899999999999999987
No 485
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.28 E-value=0.011 Score=46.94 Aligned_cols=24 Identities=25% Similarity=0.500 Sum_probs=20.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 19 ERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
...|+|.|++|+|||++++++.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 456999999999999999999853
No 486
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.26 E-value=0.01 Score=49.06 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=21.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 18 GERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
....++|+|++|+|||++++.|+..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998753
No 487
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.26 E-value=0.011 Score=47.57 Aligned_cols=22 Identities=27% Similarity=0.432 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhC
Q 036158 20 RNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~ 41 (225)
..|+|+|++||||||+...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988864
No 488
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.22 E-value=0.0087 Score=46.58 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=21.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
.....|+|.|..||||||+++.|..
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999988874
No 489
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.18 E-value=0.015 Score=45.38 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=22.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158 17 NGERNLVLVGRTGNGKSATANSILGK 42 (225)
Q Consensus 17 ~~~~~i~v~G~~g~GKSSlin~l~~~ 42 (225)
.....+++.|++|+|||++..++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 44578999999999999999998753
No 490
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.18 E-value=0.013 Score=47.49 Aligned_cols=20 Identities=35% Similarity=0.665 Sum_probs=17.5
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 036158 21 NLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~ 40 (225)
..+|+|++|+||||++.+|.
T Consensus 25 ~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 45788999999999999874
No 491
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.17 E-value=0.012 Score=48.76 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=19.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHHh
Q 036158 19 ERNLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~ 40 (225)
...|+|+|+||+|||||...|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La 23 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLA 23 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHH
Confidence 3578999999999999998875
No 492
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.17 E-value=0.15 Score=41.58 Aligned_cols=85 Identities=14% Similarity=0.182 Sum_probs=43.7
Q ss_pred CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcE
Q 036158 101 KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 180 (225)
Q Consensus 101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (225)
..++|.+++|....+..+... +-+.|... .....++++|+||+|+..+. ..+..++ |....+..|.++
T Consensus 128 ~anvD~v~iv~a~~P~~~~~~--i~r~L~~a--~~~~~~~iivlNK~DL~~~~---~~~~~~~-----~~~~y~~~G~~v 195 (358)
T 2rcn_A 128 AANIDQIVIVSAILPELSLNI--IDRYLVGC--ETLQVEPLIVLNKIDLLDDE---GMDFVNE-----QMDIYRNIGYRV 195 (358)
T ss_dssp EECCCEEEEEEESTTTCCHHH--HHHHHHHH--HHHTCEEEEEEECGGGCCHH---HHHHHHH-----HHHHHHTTTCCE
T ss_pred HhcCCEEEEEEeCCCCCCHHH--HHHHHHHH--HhcCCCEEEEEECccCCCch---hHHHHHH-----HHHHHHhCCCcE
Confidence 357799998876653333332 22222111 11136779999999987542 1122223 444555556554
Q ss_pred EEeeCCCccccccHHHHHHHHHH
Q 036158 181 VLFDNKTKDTAKRTEQVGKLLSL 203 (225)
Q Consensus 181 ~~~~~~~~~~~~~~~~v~~l~~~ 203 (225)
+.++ +.++.++++|...
T Consensus 196 ~~~S------a~~~~gl~~L~~~ 212 (358)
T 2rcn_A 196 LMVS------SHTQDGLKPLEEA 212 (358)
T ss_dssp EECB------TTTTBTHHHHHHH
T ss_pred EEEe------cCCCcCHHHHHHh
Confidence 4433 2334555655543
No 493
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.10 E-value=0.012 Score=44.31 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHhC
Q 036158 20 RNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~ 41 (225)
..++|.|++|+||||+++.+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988864
No 494
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.10 E-value=0.009 Score=50.07 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHhC
Q 036158 20 RNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~ 41 (225)
-.++|+|++|+|||||+++|.+
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4678999999999999999864
No 495
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.08 E-value=0.011 Score=50.66 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=21.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHHhC
Q 036158 18 GERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
+...++|.|.||||||+++|+|..
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999874
No 496
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.07 E-value=0.0091 Score=48.69 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=21.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158 19 ERNLVLVGRTGNGKSATANSILGKR 43 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~~~ 43 (225)
.-.++|+|++|+|||||++.|.+..
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999988654
No 497
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=95.04 E-value=0.012 Score=48.19 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhC
Q 036158 21 NLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 21 ~i~v~G~~g~GKSSlin~l~~ 41 (225)
.++++|++|+||||++++|.+
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 788999999999999999864
No 498
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.01 E-value=0.013 Score=43.98 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=19.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHHhC
Q 036158 19 ERNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 19 ~~~i~v~G~~g~GKSSlin~l~~ 41 (225)
...|+|.|.+||||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988753
No 499
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.99 E-value=0.015 Score=44.54 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=19.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHHh
Q 036158 18 GERNLVLVGRTGNGKSATANSIL 40 (225)
Q Consensus 18 ~~~~i~v~G~~g~GKSSlin~l~ 40 (225)
-+++++|+|.+||||||+...|.
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~ 29 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIK 29 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHH
Confidence 35899999999999999998875
No 500
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.99 E-value=0.016 Score=44.46 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhC
Q 036158 20 RNLVLVGRTGNGKSATANSILG 41 (225)
Q Consensus 20 ~~i~v~G~~g~GKSSlin~l~~ 41 (225)
..|++.|..||||||+++.|..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
Done!