BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036160
         (601 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  801 bits (2068), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/601 (63%), Positives = 471/601 (78%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M LA+RVF  MP+ N VSWNALLNG+A+ GD +KV++LFC M   E  FSKF+LSTVLKG
Sbjct: 280 MVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKG 339

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ANSG ++AGQ+VH++AIR+GC LD+F+SC LVDMYSKCGLA +ALKVF RI+DPDVV+W
Sbjct: 340 CANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSW 399

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            AIITCLDQ+G  +EAA++F  MR S V PNQF L SLV A T+ GD   GESIHA +CK
Sbjct: 400 SAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCK 459

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           YGFE D  V NALV+MYM+ G V  G RVFEA  ++D +SWNAL S F D E+ D GLRI
Sbjct: 460 YGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRI 519

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QML +GF PNM TFI IL++CSSLSDV  GKQ+HA  +K+SLDGN  VGT+LVDMY K
Sbjct: 520 FNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAK 579

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
           +  LEDA   F+ L  +DLFA+T I+  YAQ G+ E A+KCF +M+ EG+K NEFTLAS 
Sbjct: 580 NRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASS 639

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L+GCS +ATL +GR LHS+A+K G   DMFV++ALV MYAKCG ++DAE VF G   RDT
Sbjct: 640 LSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDT 699

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SWN +I GY +HG G KAL+AF  MLDEG VPDE+TF+ VLSACSHMGLIEEGKKHF+S
Sbjct: 700 VSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNS 759

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + KIYGITPTI+H+ACM+DILGRAGKF E+E+FI E KLT N L+WE +LGAC  HGNIE
Sbjct: 760 LSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIE 819

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
             E+ A KL ELEP+++SNY+  S++ A +G W+D + VRAL+S++G+KKEP CSW+EV+
Sbjct: 820 FGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVN 879

Query: 601 G 601
           G
Sbjct: 880 G 880



 Score =  275 bits (702), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 159/535 (29%), Positives = 282/535 (52%), Gaps = 4/535 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A +VF  +PE +VVSW AL+ G+   G G   ++LFC M+    + ++F+ +T LK  + 
Sbjct: 182 ACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSM 241

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ G+ VHA AI++G   D F+  +LVD+Y+KCG    A +VF  +   + V+W A+
Sbjct: 242 CLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNAL 301

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    Q G  ++   +F  M  S +  ++F L+++++    +G+ R G+ +H++  + G 
Sbjct: 302 LNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGC 361

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E D  +   LV MY + G      +VF  I   D VSW+A+ +         +   +F +
Sbjct: 362 ELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKR 421

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G  PN  T   ++ A + L D+ +G+ +HA   K+  + ++ V  +LV MY K G 
Sbjct: 422 MRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGS 481

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++D    F++  N+DL ++ A+++ +      +  L+ F +M  EG   N +T  S L  
Sbjct: 482 VQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRS 541

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           CS ++ +  G+ +H+  VK     + FV TALV MYAK   ++DAE +F     RD  +W
Sbjct: 542 CSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAW 601

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK 482
            +++ GY + G GEKA++ F  M  EG  P+E T    LS CS +  ++ G++ H  +IK
Sbjct: 602 TVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIK 661

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
              G +  +   + ++D+  + G   + E  + +  ++ + + W  ++   S HG
Sbjct: 662 A--GQSGDMFVASALVDMYAKCGCVEDAE-VVFDGLVSRDTVSWNTIICGYSQHG 713



 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 145/440 (32%), Positives = 232/440 (52%)

Query: 44  DMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLAD 103
           D + K      S +L+  A+ G +  G+ +H   I+ G   D  L  SLV++Y+KCG A+
Sbjct: 121 DFDSKGRLRQYSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSAN 180

Query: 104 NALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATT 163
            A KVF  I + DVV+W A+IT    +G    A  +F  MR   V+ N+F   + ++A +
Sbjct: 181 YACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACS 240

Query: 164 ETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNA 223
              D   G+ +HA   K G  SD  VG+ALV +Y + G +    RVF  +  Q++VSWNA
Sbjct: 241 MCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNA 300

Query: 224 LFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS 283
           L + F      ++ L +F +M       +  T   +LK C++  ++  G+ +H+  I+  
Sbjct: 301 LLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIG 360

Query: 284 LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFR 343
            + +  +   LVDMY K G   DA   F  + + D+ +++AIIT   Q G++  A + F+
Sbjct: 361 CELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFK 420

Query: 344 KMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403
           +MR  G+  N+FTLAS ++  + +  L  G  +H+   K G   D  V  ALV MY K G
Sbjct: 421 RMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIG 480

Query: 404 SIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           S+ D   VF+ +  RD  SWN ++ G+  +   +  L  F  ML EG+ P+  TF+ +L 
Sbjct: 481 SVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILR 540

Query: 464 ACSHMGLIEEGKKHFSSIKK 483
           +CS +  ++ GK+  + I K
Sbjct: 541 SCSSLSDVDLGKQVHAQIVK 560



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 93/198 (46%), Gaps = 13/198 (6%)

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L  C+    L  G+ +H   +K+G   D  +  +LV +YAKCGS + A  VF     RD 
Sbjct: 135 LRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDV 194

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFS 479
            SW  +I G+V  G G  A+  F  M  EG   +E T+   L ACS    +E GK+ H  
Sbjct: 195 VSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAE 254

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIEN-FITETKLTPNALVWENLLGACSWHGN 538
           +IK   G    +   + ++D+  + G+    E  F+   K   NA+ W  LL   +  G 
Sbjct: 255 AIK--VGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPK--QNAVSWNALLNGFAQMG- 309

Query: 539 IELDEKDAEKLLELEPKM 556
                 DAEK+L L  +M
Sbjct: 310 ------DAEKVLNLFCRM 321


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  798 bits (2062), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/601 (62%), Positives = 474/601 (78%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           MELA+R+F  MPE N VSWNALLNGYA+ GDG+KV+ LFC MK+ E KFSKF+LSTVLKG
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            AN+G ++ G+V+HA+A+R GC +D+FL CSLVDMYSKCG   +ALKVF +I++PDVVAW
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAW 120

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+IT LDQQG  QEAA++F+LMR    +PNQF L+SLV   T  GD R G+SIH  ICK
Sbjct: 121 SAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICK 180

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           YGFESD LV N L+ MYM++  V  G++VFEA+ + D VSWNAL S F D ++  +G RI
Sbjct: 181 YGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRI 240

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           FYQMLL+GFKPNM TFI +L++CSSL D  FGKQ+HAH IK+S D +  VGT+LVDMY K
Sbjct: 241 FYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAK 300

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
           + CLEDAGVAFD L N+D+F++T II+ YAQ  +AE A+K FR+M+ EGIK NE+TLASC
Sbjct: 301 ARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASC 360

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L+GCS +ATL NGR LH++AVK GH  D+FV +ALV +Y KCG ++ AEA+FKG   RD 
Sbjct: 361 LSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDI 420

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SWN +I GY +HG GEKALEAFRMML EG +PDE TF+ VLSACS MGL+EEGKK F S
Sbjct: 421 VSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDS 480

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + KIYGI P+I+H+ACM+DILGRAGKF E++ FI E  LTP +L+WE +LGAC  HGN++
Sbjct: 481 MSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNVD 540

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
             EK A+KL E+EP M+S+Y+  S+I A++GRW+D   +RAL++S+GIKKEP CSW+EVD
Sbjct: 541 FGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEVD 600

Query: 601 G 601
           G
Sbjct: 601 G 601


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/601 (54%), Positives = 445/601 (74%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +ELA ++F  MPE N V+WN LLNGYA+ GD   V+ LFCSM +++ K ++F+L+TVLKG
Sbjct: 264 IELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKG 323

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ANS  +K GQV+H++ I+ G   ++F+ C LVDMYSKCGLA +A+ VF  IK PD+V W
Sbjct: 324 CANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVW 383

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+ITCLDQQG  +E+ K+F+LMR     PNQ+ + SL+ A T TG+ + G+SIHA + K
Sbjct: 384 SALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWK 443

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           YGFE+D  V NALV+MYM+NG V  G++++E++  +D +SWNA  S   D    D+ L I
Sbjct: 444 YGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTI 503

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           FY ML +GF PNM TFI IL +CS L DV +G+Q+HAH IK+ LD N+ V T+L+DMY K
Sbjct: 504 FYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAK 563

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
              LEDA VAF+ L+ +DLF +T IIT+YAQ  + E AL  FR+M+ EG+K NEFTLA C
Sbjct: 564 CMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGC 623

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L+GCS +A+L  G+ LHS+  K+GH+ DMFV +ALV MYAKCG +++AEA+F+    RDT
Sbjct: 624 LSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDT 683

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            +WN +I GY ++G G KAL AFRMMLDEG  PD +TF  +LSACSH GL+EEGK+HF+S
Sbjct: 684 IAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNS 743

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + + +GI+PT+ H ACM+DILGR GKF E+E+FI + +L+ NAL+WE +LGA   H N+ 
Sbjct: 744 MYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLV 803

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           L EK A KL EL+P+ ES+Y+  S+I AT+GRW+D   VR+L+SS+G+KKEP CSW+E +
Sbjct: 804 LGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEAN 863

Query: 601 G 601
           G
Sbjct: 864 G 864



 Score =  274 bits (701), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 172/588 (29%), Positives = 294/588 (50%), Gaps = 17/588 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ V   MP+ +VVSW AL+ G    G     ++LF  M++     ++F+L+T LK  + 
Sbjct: 166 ARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSL 225

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G+ +HA A +LG  LD F+  +LVD+Y+KCG  + A K+F  + + + V W  +
Sbjct: 226 CMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVL 285

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    Q+G      K+F  M E  VK N+F LT++++    + + + G+ IH++I K G+
Sbjct: 286 LNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGY 345

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E +  +G  LV MY + G       VF+ I   D V W+AL +        ++ +++F+ 
Sbjct: 346 EGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHL 405

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M L    PN  T   +L A ++  ++ +G+ +HA   K+  + +  V  +LV MY K+GC
Sbjct: 406 MRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGC 465

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           + D    ++S+ ++DL ++ A ++     G  +  L  F  M  EG   N +T  S L  
Sbjct: 466 VHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGS 525

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           CS +  +  GR +H+  +K     + FV TAL+ MYAKC  ++DA+  F   ++RD  +W
Sbjct: 526 CSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTW 585

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
            ++I  Y +   GEKAL  FR M  EG  P+E T    LS CS +  +E G++  S + K
Sbjct: 586 TVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFK 645

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
              ++      A ++D+  + G   E E    E  +  + + W  ++   + +G      
Sbjct: 646 SGHVSDMFVGSA-LVDMYAKCGCMEEAEALF-EALIRRDTIAWNTIICGYAQNGQ----- 698

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
               K L     M    + P  ++        F+G+ +  S QG+ +E
Sbjct: 699 --GNKALTAFRMMLDEGISPDGVT--------FTGILSACSHQGLVEE 736



 Score =  228 bits (582), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 130/429 (30%), Positives = 224/429 (52%)

Query: 55  STVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
           S++L+  A+   +   + +H + ++     D  L  SLV++Y+KC  +  A  V  ++ D
Sbjct: 116 SSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPD 175

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
            DVV+W A+I  L  +G   ++  +F  M+   + PN+F L + ++A +       G+ +
Sbjct: 176 RDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQM 235

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           HA   K G   D  VG+ALV +Y + G +   S++F  +  Q+ V+WN L + +      
Sbjct: 236 HAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDV 295

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
              L++F  M+    K N  T   +LK C++  ++  G+ +H+  IK   +GN  +G  L
Sbjct: 296 TGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGL 355

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           VDMY K G   DA   F ++   D+  ++A+IT   Q G++E ++K F  MRL     N+
Sbjct: 356 VDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQ 415

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
           +T+ S L+  +    L  G+ +H+   K G   D+ VS ALV MY K G + D   +++ 
Sbjct: 416 YTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYES 475

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
              RD  SWN  + G    G+ ++ L  F  ML+EG++P+  TF+ +L +CS +  +  G
Sbjct: 476 MVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYG 535

Query: 475 KKHFSSIKK 483
           ++  + I K
Sbjct: 536 RQVHAHIIK 544



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 2/198 (1%)

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           +S L  C+   +L   + +H + VK     D  +  +LV +YAKC     A  V      
Sbjct: 116 SSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPD 175

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           RD  SW  +I G V  G    ++  F+ M +EG +P+E T    L ACS    ++ GK+ 
Sbjct: 176 RDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQM 235

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
            +   K+ G+   +   + ++D+  + G+  E+ + +       N + W  LL   +  G
Sbjct: 236 HAQAFKL-GLLLDLFVGSALVDLYAKCGEI-ELASKMFIGMPEQNDVTWNVLLNGYAQRG 293

Query: 538 NIELDEKDAEKLLELEPK 555
           ++    K    ++EL+ K
Sbjct: 294 DVTGVLKLFCSMMELDVK 311


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/601 (54%), Positives = 445/601 (74%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +ELA ++F  MPE N V+WN LLNGYA+ GD   V+ LFCSM +++ K ++F+L+TVLKG
Sbjct: 264 IELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKG 323

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ANS  +K GQV+H++ I+ G   ++F+ C LVDMYSKCGLA +A+ VF  IK PD+V W
Sbjct: 324 CANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVW 383

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+ITCLDQQG  +E+ K+F+LMR     PNQ+ + SL+ A T TG+ + G+SIHA + K
Sbjct: 384 SALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWK 443

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           YGFE+D  V NALV+MYM+NG V  G++++E++  +D +SWNA  S   D    D+ L I
Sbjct: 444 YGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTI 503

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           FY ML +GF PNM TFI IL +CS L DV +G+Q+HAH IK+ LD N+ V T+L+DMY K
Sbjct: 504 FYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAK 563

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
              LEDA VAF+ L+ +DLF +T IIT+YAQ  + E AL  FR+M+ EG+K NEFTLA C
Sbjct: 564 CMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGC 623

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L+GCS +A+L  G+ LHS+  K+GH+ DMFV +ALV MYAKCG +++AEA+F+    RDT
Sbjct: 624 LSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDT 683

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            +WN +I GY ++G G KAL AFRMMLDEG  PD +TF  +LSACSH GL+EEGK+HF+S
Sbjct: 684 IAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNS 743

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + + +GI+PT+ H ACM+DILGR GKF E+E+FI + +L+ NAL+WE +LGA   H N+ 
Sbjct: 744 MYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLV 803

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           L EK A KL EL+P+ ES+Y+  S+I AT+GRW+D   VR+L+SS+G+KKEP CSW+E +
Sbjct: 804 LGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEAN 863

Query: 601 G 601
           G
Sbjct: 864 G 864



 Score =  274 bits (701), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 172/588 (29%), Positives = 294/588 (50%), Gaps = 17/588 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ V   MP+ +VVSW AL+ G    G     ++LF  M++     ++F+L+T LK  + 
Sbjct: 166 ARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSL 225

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G+ +HA A +LG  LD F+  +LVD+Y+KCG  + A K+F  + + + V W  +
Sbjct: 226 CMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVL 285

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    Q+G      K+F  M E  VK N+F LT++++    + + + G+ IH++I K G+
Sbjct: 286 LNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGY 345

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E +  +G  LV MY + G       VF+ I   D V W+AL +        ++ +++F+ 
Sbjct: 346 EGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHL 405

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M L    PN  T   +L A ++  ++ +G+ +HA   K+  + +  V  +LV MY K+GC
Sbjct: 406 MRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGC 465

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           + D    ++S+ ++DL ++ A ++     G  +  L  F  M  EG   N +T  S L  
Sbjct: 466 VHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGS 525

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           CS +  +  GR +H+  +K     + FV TAL+ MYAKC  ++DA+  F   ++RD  +W
Sbjct: 526 CSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTW 585

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
            ++I  Y +   GEKAL  FR M  EG  P+E T    LS CS +  +E G++  S + K
Sbjct: 586 TVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFK 645

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
              ++      A ++D+  + G   E E    E  +  + + W  ++   + +G      
Sbjct: 646 SGHVSDMFVGSA-LVDMYAKCGCMEEAEALF-EALIRRDTIAWNTIICGYAQNGQ----- 698

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
               K L     M    + P  ++        F+G+ +  S QG+ +E
Sbjct: 699 --GNKALTAFRMMLDEGISPDGVT--------FTGILSACSHQGLVEE 736



 Score =  228 bits (582), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 130/429 (30%), Positives = 224/429 (52%)

Query: 55  STVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
           S++L+  A+   +   + +H + ++     D  L  SLV++Y+KC  +  A  V  ++ D
Sbjct: 116 SSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPD 175

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
            DVV+W A+I  L  +G   ++  +F  M+   + PN+F L + ++A +       G+ +
Sbjct: 176 RDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQM 235

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           HA   K G   D  VG+ALV +Y + G +   S++F  +  Q+ V+WN L + +      
Sbjct: 236 HAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDV 295

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
              L++F  M+    K N  T   +LK C++  ++  G+ +H+  IK   +GN  +G  L
Sbjct: 296 TGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGL 355

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           VDMY K G   DA   F ++   D+  ++A+IT   Q G++E ++K F  MRL     N+
Sbjct: 356 VDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQ 415

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
           +T+ S L+  +    L  G+ +H+   K G   D+ VS ALV MY K G + D   +++ 
Sbjct: 416 YTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYES 475

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
              RD  SWN  + G    G+ ++ L  F  ML+EG++P+  TF+ +L +CS +  +  G
Sbjct: 476 MVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYG 535

Query: 475 KKHFSSIKK 483
           ++  + I K
Sbjct: 536 RQVHAHIIK 544



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 2/198 (1%)

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           +S L  C+   +L   + +H + VK     D  +  +LV +YAKC     A  V      
Sbjct: 116 SSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPD 175

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           RD  SW  +I G V  G    ++  F+ M +EG +P+E T    L ACS    ++ GK+ 
Sbjct: 176 RDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQM 235

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
            +   K+ G+   +   + ++D+  + G+  E+ + +       N + W  LL   +  G
Sbjct: 236 HAQAFKL-GLLLDLFVGSALVDLYAKCGEI-ELASKMFIGMPEQNDVTWNVLLNGYAQRG 293

Query: 538 NIELDEKDAEKLLELEPK 555
           ++    K    ++EL+ K
Sbjct: 294 DVTGVLKLFCSMMELDVK 311


>gi|255546193|ref|XP_002514156.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546612|gb|EEF48110.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 885

 Score =  609 bits (1570), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 292/483 (60%), Positives = 373/483 (77%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           MELA RVF  MPE N VSWNALLNGYA+ GDG+ V+ LFC M + E  F+ ++LSTVLKG
Sbjct: 245 MELADRVFFGMPEKNNVSWNALLNGYAQRGDGKNVLKLFCRMLECEMNFTNYTLSTVLKG 304

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ANSG ++ G+ +H+++IR    LD+FL C+LVDMYSKCG+A  ALKVF  I++PD+VAW
Sbjct: 305 CANSGNLREGKALHSLSIRRAYELDEFLGCNLVDMYSKCGMAYEALKVFNMIEEPDIVAW 364

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            AIIT LDQQG  QEAA++F+LMR+  V+PNQF   S++ A T  GD   G+SIH  ICK
Sbjct: 365 SAIITGLDQQGHSQEAAELFHLMRQKGVRPNQFSFASVISAATNVGDLYLGQSIHCCICK 424

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           YG+ESD  VGNAL++MYM++G V  G RVF+ + ++D VSWNAL S F D+E+ DQGLRI
Sbjct: 425 YGYESDNSVGNALITMYMKSGFVQDGIRVFDTMTNRDLVSWNALLSGFYDFETSDQGLRI 484

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QML++G  PN+ TF+ +L++CSSL +V FGKQ+HAH IK+SLDGN  VGT+L+DMY K
Sbjct: 485 FCQMLMEGLVPNLYTFVGVLRSCSSLLNVWFGKQVHAHIIKNSLDGNDFVGTALIDMYAK 544

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
           + CLEDA VAF+ L N+DLF +T II  ++Q  +AE A+K   +M  EGIK NEFTLASC
Sbjct: 545 NRCLEDADVAFNKLTNRDLFTWTVIIAGHSQTDKAEKAVKYLGQMLREGIKPNEFTLASC 604

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L+GCS +ATL NG+ LHS+A+K+GH  D+FVS+ALV MY KCG ++DAEA+FKG   RDT
Sbjct: 605 LSGCSRMATLGNGQQLHSLAIKSGHSGDVFVSSALVDMYGKCGCMEDAEAIFKGLFSRDT 664

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            +WN +I GY +HG G+KALEAFRMMLDE   PDE+TF+ VL+ACS+MG +EEGKKHF  
Sbjct: 665 VAWNTIICGYSQHGQGQKALEAFRMMLDEDIDPDEVTFIGVLAACSYMGWVEEGKKHFDL 724

Query: 481 IKK 483
           + K
Sbjct: 725 MSK 727



 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 168/592 (28%), Positives = 304/592 (51%), Gaps = 19/592 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A++V   M E +VVSW AL+ GY   G G   +  +C M+      ++F+L+TVLK 
Sbjct: 144 LAFARKVLVGMRERDVVSWTALIAGYVSEGCGSDGVKAYCEMRKENICPNEFTLATVLKA 203

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    IK G+++H  AI+ G  LD F+  +LVD+Y+K G  + A +VF+ + + + V+W
Sbjct: 204 SSMCSDIKFGKLIHLEAIKTGLLLDLFVGSALVDLYAKFGEMELADRVFFGMPEKNNVSW 263

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A++    Q+G  +   K+F  M E  +    + L+++++    +G+ R G+++H++  +
Sbjct: 264 NALLNGYAQRGDGKNVLKLFCRMLECEMNFTNYTLSTVLKGCANSGNLREGKALHSLSIR 323

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             +E D  +G  LV MY + G      +VF  I   D V+W+A+ +         +   +
Sbjct: 324 RAYELDEFLGCNLVDMYSKCGMAYEALKVFNMIEEPDIVAWSAIITGLDQQGHSQEAAEL 383

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F+ M  KG +PN  +F  ++ A +++ D+  G+ +H    K+  + ++ VG +L+ MY K
Sbjct: 384 FHLMRQKGVRPNQFSFASVISAATNVGDLYLGQSIHCCICKYGYESDNSVGNALITMYMK 443

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
           SG ++D    FD++ N+DL ++ A+++ +     ++  L+ F +M +EG+  N +T    
Sbjct: 444 SGFVQDGIRVFDTMTNRDLVSWNALLSGFYDFETSDQGLRIFCQMLMEGLVPNLYTFVGV 503

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L  CS +  +  G+ +H+  +K     + FV TAL+ MYAK   ++DA+  F     RD 
Sbjct: 504 LRSCSSLLNVWFGKQVHAHIIKNSLDGNDFVGTALIDMYAKNRCLEDADVAFNKLTNRDL 563

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFS 479
            +W ++I G+ +    EKA++    ML EG  P+E T    LS CS M  +  G++ H  
Sbjct: 564 FTWTVIIAGHSQTDKAEKAVKYLGQMLREGIKPNEFTLASCLSGCSRMATLGNGQQLHSL 623

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           +IK   G +  +   + ++D+ G+ G   + E  I +   + + + W  ++   S HG  
Sbjct: 624 AIKS--GHSGDVFVSSALVDMYGKCGCMEDAEA-IFKGLFSRDTVAWNTIICGYSQHGQ- 679

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
                  +K LE    M    + P +++        F GV A  S  G  +E
Sbjct: 680 ------GQKALEAFRMMLDEDIDPDEVT--------FIGVLAACSYMGWVEE 717



 Score =  242 bits (617), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 140/429 (32%), Positives = 229/429 (53%)

Query: 55  STVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
           S +L+  A+ G +  G  +H   I+ G   D  L  SL+++Y+KCG    A KV   +++
Sbjct: 97  SGMLRECASKGNLNEGTAIHGNVIKSGLEPDSHLWVSLINLYAKCGSLAFARKVLVGMRE 156

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
            DVV+W A+I     +GC  +  K +  MR+ ++ PN+F L ++++A++   D + G+ I
Sbjct: 157 RDVVSWTALIAGYVSEGCGSDGVKAYCEMRKENICPNEFTLATVLKASSMCSDIKFGKLI 216

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H    K G   D  VG+ALV +Y + G +    RVF  +  +++VSWNAL + +      
Sbjct: 217 HLEAIKTGLLLDLFVGSALVDLYAKFGEMELADRVFFGMPEKNNVSWNALLNGYAQRGDG 276

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
              L++F +ML         T   +LK C++  ++  GK LH+ +I+ + + +  +G +L
Sbjct: 277 KNVLKLFCRMLECEMNFTNYTLSTVLKGCANSGNLREGKALHSLSIRRAYELDEFLGCNL 336

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           VDMY K G   +A   F+ +   D+ A++AIIT   Q G ++ A + F  MR +G++ N+
Sbjct: 337 VDMYSKCGMAYEALKVFNMIEEPDIVAWSAIITGLDQQGHSQEAAELFHLMRQKGVRPNQ 396

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
           F+ AS ++  + V  L  G+ +H    K G+  D  V  AL+ MY K G + D   VF  
Sbjct: 397 FSFASVISAATNVGDLYLGQSIHCCICKYGYESDNSVGNALITMYMKSGFVQDGIRVFDT 456

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
              RD  SWN ++ G+      ++ L  F  ML EG VP+  TFV VL +CS +  +  G
Sbjct: 457 MTNRDLVSWNALLSGFYDFETSDQGLRIFCQMLMEGLVPNLYTFVGVLRSCSSLLNVWFG 516

Query: 475 KKHFSSIKK 483
           K+  + I K
Sbjct: 517 KQVHAHIIK 525



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 192/375 (51%), Gaps = 2/375 (0%)

Query: 156 TSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH 215
           + ++R     G+   G +IH  + K G E D+ +  +L+++Y + G +++  +V   +  
Sbjct: 97  SGMLRECASKGNLNEGTAIHGNVIKSGLEPDSHLWVSLINLYAKCGSLAFARKVLVGMRE 156

Query: 216 QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL 275
           +D VSW AL + +        G++ + +M  +   PN  T   +LKA S  SD+ FGK +
Sbjct: 157 RDVVSWTALIAGYVSEGCGSDGVKAYCEMRKENICPNEFTLATVLKASSMCSDIKFGKLI 216

Query: 276 HAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEA 335
           H   IK  L  +  VG++LVD+Y K G +E A   F  +  K+  ++ A++  YAQ G+ 
Sbjct: 217 HLEAIKTGLLLDLFVGSALVDLYAKFGEMELADRVFFGMPEKNNVSWNALLNGYAQRGDG 276

Query: 336 EMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTAL 395
           +  LK F +M    +    +TL++ L GC+    L  G+ LHS++++  + LD F+   L
Sbjct: 277 KNVLKLFCRMLECEMNFTNYTLSTVLKGCANSGNLREGKALHSLSIRRAYELDEFLGCNL 336

Query: 396 VAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE 455
           V MY+KCG   +A  VF      D  +W+ +I G  + G  ++A E F +M  +G  P++
Sbjct: 337 VDMYSKCGMAYEALKVFNMIEEPDIVAWSAIITGLDQQGHSQEAAELFHLMRQKGVRPNQ 396

Query: 456 ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFIT 515
            +F  V+SA +++G +  G+     I K YG          +I +  ++G F +    + 
Sbjct: 397 FSFASVISAATNVGDLYLGQSIHCCICK-YGYESDNSVGNALITMYMKSG-FVQDGIRVF 454

Query: 516 ETKLTPNALVWENLL 530
           +T    + + W  LL
Sbjct: 455 DTMTNRDLVSWNALL 469


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  587 bits (1512), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 290/601 (48%), Positives = 399/601 (66%), Gaps = 1/601 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A++V + MP  +V  WN  L+        Q+ + LF  M+    + ++F  ++++  
Sbjct: 40  LQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFYLMRHTRIRLNQFIFASLISA 99

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+ G    G+ +HA   + G   D  +S + V MY K    +N  + F  +   ++ + 
Sbjct: 100 AASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASR 159

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +++       C +  +I   +     +PN +   S+++     GD   G++IH  + K
Sbjct: 160 NNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIK 219

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G   D+ + N+LV++Y + G  +Y  +VF  I  +D VSW AL + F   E    GLRI
Sbjct: 220 SGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVA-EGYGSGLRI 278

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QML +GF PNM TFI IL++CSSLSDV  GKQ+HA  +K+SLDGN  VGT+LVDMY K
Sbjct: 279 FNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAK 338

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
           +  LEDA   F+ L  +DLFA+T I+  YAQ G+ E A+KCF +M+ EG+K NEFTLAS 
Sbjct: 339 NRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASS 398

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L+GCS +ATL +GR LHS+A+K G   DMFV++ALV MYAKCG ++DAE VF G   RDT
Sbjct: 399 LSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDT 458

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SWN +I GY +HG G KAL+AF  MLDEG VPDE+TF+ VLSACSHMGLIEEGKKHF+S
Sbjct: 459 VSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNS 518

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + KIYGITPTI+H+ACM+DILGRAGKF E+E+FI E KLT N L+WE +LGAC  HGNIE
Sbjct: 519 LSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIE 578

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
             E+ A KL ELEP+++SNY+  S++ A +G W+D + VRAL+S++G+KKEP CSW+EV+
Sbjct: 579 FGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVN 638

Query: 601 G 601
           G
Sbjct: 639 G 639



 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 164/461 (35%), Positives = 252/461 (54%), Gaps = 5/461 (1%)

Query: 78  IRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAA 137
           I+ G   D  L  SLV++Y KC     A +V   +   DV  W   ++  +     QEA 
Sbjct: 16  IKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAV 75

Query: 138 KIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMY 197
           ++F LMR + ++ NQF+  SL+ A    GD   GESIHA +CKYGFESD L+ NA V+MY
Sbjct: 76  QLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMY 135

Query: 198 MENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFI 257
           M+   V  G + F+A+  ++  S N L S F D E+ DQG RI  Q+L++GF+PNM TFI
Sbjct: 136 MKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFI 195

Query: 258 VILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK 317
            ILK C+S  D+  GK +H   IK  ++ +  +  SLV++Y K G    A   F  +  +
Sbjct: 196 SILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPER 255

Query: 318 DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLH 377
           D+ ++TA+IT +   G     L+ F +M  EG   N +T  S L  CS ++ +  G+ +H
Sbjct: 256 DVVSWTALITGFVAEGYGS-GLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVH 314

Query: 378 SIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGE 437
           +  VK     + FV TALV MYAK   ++DAE +F     RD  +W +++ GY + G GE
Sbjct: 315 AQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGE 374

Query: 438 KALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFAC 496
           KA++ F  M  EG  P+E T    LS CS +  ++ G++ H  +IK   G +  +   + 
Sbjct: 375 KAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKA--GQSGDMFVASA 432

Query: 497 MIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           ++D+  + G   + E  + +  ++ + + W  ++   S HG
Sbjct: 433 LVDMYAKCGCVEDAE-VVFDGLVSRDTVSWNTIICGYSQHG 472



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 151/306 (49%), Gaps = 1/306 (0%)

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
           + K G   D+ + ++LV++Y++   +    +V E +  QD   WN   S         + 
Sbjct: 15  VIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEA 74

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           +++FY M     + N   F  ++ A +SL D  +G+ +HA   K+  + + ++  + V M
Sbjct: 75  VQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTM 134

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K+  +E+    F ++  ++L +   +++ +      +   +   ++ +EG + N +T 
Sbjct: 135 YMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTF 194

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
            S L  C+    L  G+ +H   +K+G   D  +  +LV +YAKCGS + A  VF     
Sbjct: 195 ISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPE 254

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           RD  SW  +I G+V  G G   L  F  ML EG+ P+  TF+ +L +CS +  ++ GK+ 
Sbjct: 255 RDVVSWTALITGFVAEGYG-SGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQV 313

Query: 478 FSSIKK 483
            + I K
Sbjct: 314 HAQIVK 319



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 111/234 (47%), Gaps = 3/234 (1%)

Query: 273 KQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQA 332
           K++    IK+ +  +  + +SLV++Y K   L+ A    + +  +D+  +   ++S    
Sbjct: 9   KKIIFRVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSP 68

Query: 333 GEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS 392
              + A++ F  MR   I+ N+F  AS ++  + +     G  +H+   K G   D+ +S
Sbjct: 69  YPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILIS 128

Query: 393 TALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV 452
            A V MY K  S+++    FK   + + AS N ++ G+      ++       +L EG+ 
Sbjct: 129 NAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFE 188

Query: 453 PDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAG 505
           P+  TF+ +L  C+  G + EGK  H   IK   GI P    +  ++++  + G
Sbjct: 189 PNMYTFISILKTCASKGDLNEGKAIHGQVIKS--GINPDSHLWNSLVNVYAKCG 240


>gi|218188593|gb|EEC71020.1| hypothetical protein OsI_02714 [Oryza sativa Indica Group]
          Length = 825

 Score =  530 bits (1364), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 268/601 (44%), Positives = 380/601 (63%), Gaps = 1/601 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +++A+R     P  + VSWNALLN YA  GD  KVM +F  + +   + SK++L TVLK 
Sbjct: 212 VDVAERALLDSPVRSDVSWNALLNEYARDGDYAKVMLVFDKLVESGDEISKYTLPTVLKC 271

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
               G  K+GQ VH + I+ G   D+ L+  L++MYSKC  A++A +VF RI +PDVV  
Sbjct: 272 CMELGLAKSGQAVHGLVIKRGLETDRVLNNCLIEMYSKCLSAEDAYEVFARIDEPDVVHC 331

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+C D+     EA  IF  M +  VKPNQ+    L    + TGD     SIHA I K
Sbjct: 332 SLMISCFDRHDMAPEAFDIFMQMSDMGVKPNQYTFVGLAIVASRTGDVNLCRSIHAHIVK 391

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GF     V +A+V MY++ G V      F+ +   D  SWN L S F    + + GLRI
Sbjct: 392 SGFSRTKGVCDAIVGMYVKTGAVQDAILAFDLMQGPDIASWNTLLSGFYSGNNCEHGLRI 451

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +++ +G   N  T++ IL+ C+SL D+ FG Q+HA  +K    G++ V   L+DMY +
Sbjct: 452 FKELICEGVLANKYTYVGILRCCTSLMDLRFGCQVHACVLKSGFQGDYDVSKMLLDMYVQ 511

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
           +GC  +A + FD L  +D+F++T ++++YA+  E E A++CFR M  E  + N+ TLA+ 
Sbjct: 512 AGCFTNARLVFDRLKERDVFSWTVVMSTYAKTDEGEKAIECFRSMLRENKRPNDATLATS 571

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L+ CS +A L +G  LHS  +K+G      VS+ALV MY KCG++ DAE +F  S   D 
Sbjct: 572 LSVCSDLACLGSGLQLHSYTIKSG-WNSSVVSSALVDMYVKCGNLADAEMLFDESDTHDL 630

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
             WN +I GY +HG G KALEAF+ M+DEG VPDEITFV VLSACSH GL++EG+++F  
Sbjct: 631 VEWNTIICGYAQHGHGYKALEAFQEMIDEGNVPDEITFVGVLSACSHAGLLDEGRRYFKL 690

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +  +YGITPT++H+ACM+DIL +AGK  E E+ I E  LTP+A +W+ +LGAC  HGNIE
Sbjct: 691 LSSVYGITPTLEHYACMVDILAKAGKLAEAESLINEMPLTPDASLWKTILGACRMHGNIE 750

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           + E+ AEKL E +P   S+ +  S+I A   RWND + +R++L  +G+KKEP CSWIE++
Sbjct: 751 IAERAAEKLFESQPDDISSCILLSNIYADLKRWNDVAKLRSMLVDRGVKKEPGCSWIEIN 810

Query: 601 G 601
           G
Sbjct: 811 G 811



 Score =  241 bits (615), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 149/536 (27%), Positives = 260/536 (48%), Gaps = 5/536 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF  MP  +VV+W A+++    +GD    + LF  M +     + F+L+  LK    
Sbjct: 114 ARSVFDGMPHRDVVAWTAMVSAITAAGDAGAALRLFAEMSEEGVVPNGFALAAALKACTV 173

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +     VHA A++L    D ++S SLV+ Y  CG  D A +          V+W A+
Sbjct: 174 GSDLGFTPQVHAQAVKLEGLFDPYVSSSLVEAYVSCGEVDVAERALLDSPVRSDVSWNAL 233

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    + G   +   +F+ + ES  + +++ L ++++   E G  + G+++H ++ K G 
Sbjct: 234 LNEYARDGDYAKVMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGL 293

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E+D ++ N L+ MY +         VF  I   D V  + + S F  ++   +   IF Q
Sbjct: 294 ETDRVLNNCLIEMYSKCLSAEDAYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQ 353

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G KPN  TF+ +    S   DV   + +HAH +K        V  ++V MY K+G 
Sbjct: 354 MSDMGVKPNQYTFVGLAIVASRTGDVNLCRSIHAHIVKSGFSRTKGVCDAIVGMYVKTGA 413

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++DA +AFD +   D+ ++  +++ +      E  L+ F+++  EG+ +N++T    L  
Sbjct: 414 VQDAILAFDLMQGPDIASWNTLLSGFYSGNNCEHGLRIFKELICEGVLANKYTYVGILRC 473

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +  L  G  +H+  +K+G   D  VS  L+ MY + G   +A  VF     RD  SW
Sbjct: 474 CTSLMDLRFGCQVHACVLKSGFQGDYDVSKMLLDMYVQAGCFTNARLVFDRLKERDVFSW 533

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG-KKHFSSIK 482
            +++  Y K   GEKA+E FR ML E   P++ T    LS CS +  +  G + H  +IK
Sbjct: 534 TVVMSTYAKTDEGEKAIECFRSMLRENKRPNDATLATSLSVCSDLACLGSGLQLHSYTIK 593

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
              G   ++   A ++D+  + G   + E    E+  T + + W  ++   + HG+
Sbjct: 594 S--GWNSSVVSSA-LVDMYVKCGNLADAEMLFDESD-THDLVEWNTIICGYAQHGH 645



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 129/456 (28%), Positives = 211/456 (46%), Gaps = 1/456 (0%)

Query: 53  SLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI 112
           S +  L+G A S  ++ G+ +HA  +R G   D FL  SL++MY KCG   +A  VF  +
Sbjct: 62  SYAAALQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCGRLADARSVFDGM 121

Query: 113 KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172
              DVVAW A+++ +   G    A ++F  M E  V PN F L + ++A T   D     
Sbjct: 122 PHRDVVAWTAMVSAITAAGDAGAALRLFAEMSEEGVVPNGFALAAALKACTVGSDLGFTP 181

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
            +HA   K     D  V ++LV  Y+  G V    R       +  VSWNAL + +    
Sbjct: 182 QVHAQAVKLEGLFDPYVSSSLVEAYVSCGEVDVAERALLDSPVRSDVSWNALLNEYARDG 241

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
              + + +F +++  G + +  T   +LK C  L     G+ +H   IK  L+ + V+  
Sbjct: 242 DYAKVMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRVLNN 301

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
            L++MY K    EDA   F  +   D+   + +I+ + +   A  A   F +M   G+K 
Sbjct: 302 CLIEMYSKCLSAEDAYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVKP 361

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
           N++T        S    +   R +H+  VK+G      V  A+V MY K G++ DA   F
Sbjct: 362 NQYTFVGLAIVASRTGDVNLCRSIHAHIVKSGFSRTKGVCDAIVGMYVKTGAVQDAILAF 421

Query: 413 KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE 472
                 D ASWN ++ G+      E  L  F+ ++ EG + ++ T+V +L  C+ +  + 
Sbjct: 422 DLMQGPDIASWNTLLSGFYSGNNCEHGLRIFKELICEGVLANKYTYVGILRCCTSLMDLR 481

Query: 473 EGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFT 508
            G +  + + K  G          ++D+  +AG FT
Sbjct: 482 FGCQVHACVLK-SGFQGDYDVSKMLLDMYVQAGCFT 516


>gi|357130409|ref|XP_003566841.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 815

 Score =  526 bits (1355), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 269/601 (44%), Positives = 376/601 (62%), Gaps = 1/601 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+ V   +PE + VSWNALLNGYA  GD ++VM +   +     + SK++L TVLK 
Sbjct: 202 LDAAETVLLGLPERSDVSWNALLNGYARHGDYRRVMIIIEKLVASGDEISKYTLPTVLKC 261

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
               G  K GQ VHA  I+ G   D  L+  LV+MYS+C  A+ A +VF RI +PDVV  
Sbjct: 262 CMELGLAKYGQSVHASVIKRGLETDNVLNSCLVEMYSRCLSAEEAYEVFIRIDEPDVVHC 321

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I+C D+     EA  +F  M    VKPN ++   +    + TGD     S+HA I K
Sbjct: 322 SAMISCFDRHDMAWEALDLFVKMSGMGVKPNHYIFVGIAGVASRTGDANLCRSVHAYIVK 381

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GF     VG+A+++MY++ G V   +  F+ I   D+ SWN + S F    + +QGLRI
Sbjct: 382 SGFAMLKGVGDAILNMYVKVGAVQDATVTFDLIHEPDTFSWNTILSAFYSGSNCEQGLRI 441

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QM  +GF  N  T++ +L+ C+SL ++ FG Q+HA  +K  L  +  V   LVDMY +
Sbjct: 442 FKQMACEGFSANKYTYVSVLRCCTSLMNLRFGTQVHACILKSGLQNDTDVSRMLVDMYAQ 501

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
           SGC   A + F+ L  +D F++T I++ YA+  EAE  ++ FR M  E I+ ++ TLA  
Sbjct: 502 SGCFTSACLVFEQLKERDAFSWTVIMSGYAKTEEAEKVVEYFRSMLRENIRPSDATLAVS 561

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L+ CS +A+L +G  LHS A+K+G      VS ALV MY KCG+I DAE +F  S  RD 
Sbjct: 562 LSVCSDMASLGSGLQLHSWAIKSG-WNSSVVSGALVDMYVKCGNIADAEMLFHESETRDQ 620

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            +WN +I GY +HG G KAL+AF+ M+DEG  PD ITFV VLSACSH GL+ EG+K+F S
Sbjct: 621 VAWNTIICGYSQHGHGYKALDAFKQMVDEGKRPDGITFVGVLSACSHAGLLNEGRKYFKS 680

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +  IYGITPT++H+ACM+DIL +AG+  E E+ I +  L P++ +W  +LGAC  H NIE
Sbjct: 681 LSSIYGITPTMEHYACMVDILSKAGRLVEAESLINQMPLAPDSSIWRTILGACRIHRNIE 740

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           + E+ AE+L ELEP   S+ +  S+I A  GRW+D + VR +L   G+KKEP CSWIE++
Sbjct: 741 IAERAAERLFELEPHDASSSILLSNIYADLGRWSDVTRVRNILLDHGVKKEPGCSWIEIN 800

Query: 601 G 601
           G
Sbjct: 801 G 801



 Score =  251 bits (640), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 155/536 (28%), Positives = 264/536 (49%), Gaps = 5/536 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+RVF  MP  ++V+W A+++ +  +GD  + + +F  M       + F+L++VLK  + 
Sbjct: 104 ARRVFDGMPHRDIVAWTAMISAHTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACSG 163

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
             + K    VH   ++L    D ++  SLV+ Y+ CG  D A  V   + +   V+W A+
Sbjct: 164 GSHSKFTHQVHGQVVKLNGLDDPYVGSSLVEAYTSCGELDAAETVLLGLPERSDVSWNAL 223

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    + G  +    I   +  S  + +++ L ++++   E G  + G+S+HA + K G 
Sbjct: 224 LNGYARHGDYRRVMIIIEKLVASGDEISKYTLPTVLKCCMELGLAKYGQSVHASVIKRGL 283

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E+D ++ + LV MY           VF  I   D V  +A+ S F  ++   + L +F +
Sbjct: 284 ETDNVLNSCLVEMYSRCLSAEEAYEVFIRIDEPDVVHCSAMISCFDRHDMAWEALDLFVK 343

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G KPN   F+ I    S   D    + +HA+ +K        VG ++++MY K G 
Sbjct: 344 MSGMGVKPNHYIFVGIAGVASRTGDANLCRSVHAYIVKSGFAMLKGVGDAILNMYVKVGA 403

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++DA V FD +   D F++  I++++      E  L+ F++M  EG  +N++T  S L  
Sbjct: 404 VQDATVTFDLIHEPDTFSWNTILSAFYSGSNCEQGLRIFKQMACEGFSANKYTYVSVLRC 463

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +  L  G  +H+  +K+G   D  VS  LV MYA+ G    A  VF+    RD  SW
Sbjct: 464 CTSLMNLRFGTQVHACILKSGLQNDTDVSRMLVDMYAQSGCFTSACLVFEQLKERDAFSW 523

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG-KKHFSSIK 482
            +++ GY K    EK +E FR ML E   P + T  V LS CS M  +  G + H  +IK
Sbjct: 524 TVIMSGYAKTEEAEKVVEYFRSMLRENIRPSDATLAVSLSVCSDMASLGSGLQLHSWAIK 583

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
              G   ++   A ++D+  + G   + E    E++ T + + W  ++   S HG+
Sbjct: 584 S--GWNSSVVSGA-LVDMYVKCGNIADAEMLFHESE-TRDQVAWNTIICGYSQHGH 635



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 133/499 (26%), Positives = 230/499 (46%), Gaps = 9/499 (1%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           ++ GQ +HA  +R     D FL  SL++MY KCG   +A +VF  +   D+VAW A+I+ 
Sbjct: 66  LRRGQELHARLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMPHRDIVAWTAMISA 125

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
               G   +A  +F  M +  + PN F L S+++A +     +    +H  + K     D
Sbjct: 126 HTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACSGGSHSKFTHQVHGQVVKLNGLDD 185

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             VG++LV  Y   G +     V   +  +  VSWNAL + +  +    + + I  +++ 
Sbjct: 186 PYVGSSLVEAYTSCGELDAAETVLLGLPERSDVSWNALLNGYARHGDYRRVMIIIEKLVA 245

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
            G + +  T   +LK C  L    +G+ +HA  IK  L+ ++V+ + LV+MY +    E+
Sbjct: 246 SGDEISKYTLPTVLKCCMELGLAKYGQSVHASVIKRGLETDNVLNSCLVEMYSRCLSAEE 305

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A   F  +   D+   +A+I+ + +   A  AL  F KM   G+K N +         S 
Sbjct: 306 AYEVFIRIDEPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMGVKPNHYIFVGIAGVASR 365

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
                  R +H+  VK+G  +   V  A++ MY K G++ DA   F      DT SWN +
Sbjct: 366 TGDANLCRSVHAYIVKSGFAMLKGVGDAILNMYVKVGAVQDATVTFDLIHEPDTFSWNTI 425

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           +  +      E+ L  F+ M  EG+  ++ T+V VL  C+ +  +  G +  + I K  G
Sbjct: 426 LSAFYSGSNCEQGLRIFKQMACEGFSANKYTYVSVLRCCTSLMNLRFGTQVHACILK-SG 484

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDA 546
           +         ++D+  ++G FT     + E     +A  W  ++   +         ++A
Sbjct: 485 LQNDTDVSRMLVDMYAQSGCFTS-ACLVFEQLKERDAFSWTVIMSGYA-------KTEEA 536

Query: 547 EKLLELEPKMESNYVFPSD 565
           EK++E    M    + PSD
Sbjct: 537 EKVVEYFRSMLRENIRPSD 555



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/245 (32%), Positives = 129/245 (52%), Gaps = 3/245 (1%)

Query: 260 LKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL 319
           L+ C+    +  G++LHA  ++ +L  +  +  SL++MY K G L DA   FD + ++D+
Sbjct: 57  LQDCAVRRTLRRGQELHARLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMPHRDI 116

Query: 320 FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSI 379
            A+TA+I+++  AG+++ AL  F +M  EGI  N FTLAS L  CS  +       +H  
Sbjct: 117 VAWTAMISAHTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACSGGSHSKFTHQVHGQ 176

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
            VK   L D +V ++LV  Y  CG +D AE V  G   R   SWN ++ GY +HG   + 
Sbjct: 177 VVKLNGLDDPYVGSSLVEAYTSCGELDAAETVLLGLPERSDVSWNALLNGYARHGDYRRV 236

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMI 498
           +     ++  G    + T   VL  C  +GL + G+  H S IK+  G+       +C++
Sbjct: 237 MIIIEKLVASGDEISKYTLPTVLKCCMELGLAKYGQSVHASVIKR--GLETDNVLNSCLV 294

Query: 499 DILGR 503
           ++  R
Sbjct: 295 EMYSR 299



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 57/109 (52%)

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           A+ L  C+   TL  G+ LH+  +++    D F+  +L+ MY KCG + DA  VF G   
Sbjct: 54  AAALQDCAVRRTLRRGQELHARLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMPH 113

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
           RD  +W  MI  +   G  ++AL+ F  M  EG  P+  T   VL ACS
Sbjct: 114 RDIVAWTAMISAHTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACS 162


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/597 (36%), Positives = 342/597 (57%)

Query: 4    AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
            A+ +F +MP+ +++SWNA++ GYA   D  + M L+  M+    K  + +   +L    N
Sbjct: 439  ARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTN 498

Query: 64   SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            S     G+++H   +R G   +  L+ +L++MY +CG    A  VF   +  D+++W ++
Sbjct: 499  SSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSM 558

Query: 124  ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
            I    Q G  + A K+F  M++  ++P++    S++           G  IH +I + G 
Sbjct: 559  IAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGL 618

Query: 184  ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            + D  +GNAL++MY+  G +     VF ++ H++ +SW A+   F D     +   +F+Q
Sbjct: 619  QLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQ 678

Query: 244  MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
            M   GFKP   TF  ILKAC S + +  GK++ AH +    + +  VG +L+  Y KSG 
Sbjct: 679  MQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGS 738

Query: 304  LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
            + DA   FD + N+D+ ++  +I  YAQ G    AL+   +M+ +G+  N+F+  S LN 
Sbjct: 739  MTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNA 798

Query: 364  CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
            CS  + L  G+ +H+  VK     D+ V  AL++MYAKCGS+++A+ VF     ++  +W
Sbjct: 799  CSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTW 858

Query: 424  NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
            N MI  Y +HGL  KAL+ F  M  EG  PD  TF  +LSAC+H GL+ EG + FSS++ 
Sbjct: 859  NAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLES 918

Query: 484  IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
             +G++PTI+H+ C++ +LGRAG+F E E  I +    P+A VWE LLGAC  HGN+ L E
Sbjct: 919  QHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAE 978

Query: 544  KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
              A   L+L  +  + YV  S++ A  GRW+D + +R ++  +GI+KEP  SWIEVD
Sbjct: 979  HAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVD 1035



 Score =  268 bits (684), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 156/536 (29%), Positives = 283/536 (52%), Gaps = 6/536 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AK+  ++  + +VV +NAL+   A+ G  ++    +  M+      ++ +  +VL   + 
Sbjct: 338 AKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACST 397

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           S  + AG+++H+    +G + D  +  SL+ MY++CG    A ++F  +   D+++W AI
Sbjct: 398 SKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAI 457

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    ++    EA K++  M+   VKP +     L+ A T +     G+ IH  I + G 
Sbjct: 458 IAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGI 517

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           +S+  + NAL++MY   G +     VFE    +D +SWN++ +    + S +   ++F +
Sbjct: 518 KSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLE 577

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +G +P+  TF  +L  C +   +  G+Q+H   I+  L  +  +G +L++MY + G 
Sbjct: 578 MKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGS 637

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L+DA   F SL ++++ ++TA+I  +A  GE   A + F +M+ +G K  + T +S L  
Sbjct: 638 LQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKA 697

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C   A L  G+ + +  + +G+ LD  V  AL++ Y+K GS+ DA  VF     RD  SW
Sbjct: 698 CMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSW 757

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI-- 481
           N MI GY ++GLG  AL+    M ++G V ++ +FV +L+ACS    +EEGK+  + I  
Sbjct: 758 NKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVK 817

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           +K+ G    ++  A +I +  + G   E +  + +     N + W  ++ A + HG
Sbjct: 818 RKMQG---DVRVGAALISMYAKCGSLEEAQE-VFDNFTEKNVVTWNAMINAYAQHG 869



 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 165/563 (29%), Positives = 286/563 (50%), Gaps = 15/563 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A +VF  MP  +V+SWN+L++ YA+ G  +K   LF  M+      SK +  ++L    +
Sbjct: 136 AHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCS 195

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ G+ +H+  I  G   D  +  SL++MY KC    +A +VF  I   DVV++  +
Sbjct: 196 PAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTM 255

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    Q+   +E   +F  M    + P++    +L+ A T       G+ IH +    G 
Sbjct: 256 LGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGL 315

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            SD  VG AL +M++  G V+   +  EA A +D V +NAL +    +   ++    +YQ
Sbjct: 316 NSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQ 375

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHT--IKHSLDGNHVVGTSLVDMYDKS 301
           M   G   N  T++ +L ACS+   +G G+ +H+H   + HS D    +G SL+ MY + 
Sbjct: 376 MRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQ--IGNSLISMYARC 433

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G L  A   F+++  +DL ++ AII  YA+  +   A+K +++M+ EG+K    T    L
Sbjct: 434 GDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLL 493

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           + C+  +  ++G+++H   +++G   +  ++ AL+ MY +CGSI +A+ VF+G+  RD  
Sbjct: 494 SACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDII 553

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSS 480
           SWN MI G+ +HG  E A + F  M  EG  PD+ITF  VL  C +   +E G++ H   
Sbjct: 554 SWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLI 613

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           I+   G+   +     +I++  R G   +        +   N + W  ++G  +      
Sbjct: 614 IES--GLQLDVNLGNALINMYIRCGSLQDAYEVFHSLR-HRNVMSWTAMIGGFA------ 664

Query: 541 LDEKDAEKLLELEPKMESNYVFP 563
            D+ +  K  EL  +M+++   P
Sbjct: 665 -DQGEDRKAFELFWQMQNDGFKP 686



 Score =  267 bits (682), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 147/478 (30%), Positives = 247/478 (51%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF  +   +VVS+N +L  YA+    ++ + LF  M        K +   +L  F  
Sbjct: 237 ARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTT 296

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G+ +H +A+  G   D  +  +L  M+ +CG    A +      D DVV + A+
Sbjct: 297 PSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNAL 356

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I  L Q G  +EA + +  MR   V  N+    S++ A + +     GE IH+ I + G 
Sbjct: 357 IAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGH 416

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            SD  +GN+L+SMY   G +     +F  +  +D +SWNA+ + +   E   + ++++ Q
Sbjct: 417 SSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQ 476

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +G KP   TF+ +L AC++ S    GK +H   ++  +  N  +  +L++MY + G 
Sbjct: 477 MQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGS 536

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           + +A   F+    +D+ ++ ++I  +AQ G  E A K F +M+ EG++ ++ T AS L G
Sbjct: 537 IMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVG 596

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C     L  GR +H + +++G  LD+ +  AL+ MY +CGS+ DA  VF     R+  SW
Sbjct: 597 CKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSW 656

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
             MIGG+   G   KA E F  M ++G+ P + TF  +L AC     ++EGKK  + I
Sbjct: 657 TAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHI 714



 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 138/468 (29%), Positives = 246/468 (52%), Gaps = 2/468 (0%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           +HA  +  G   D FLS  L++MY KC    +A +VF ++   DV++W ++I+C  QQG 
Sbjct: 104 IHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGF 163

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
            ++A ++F  M+ +   P++    S++ A     +   G+ IH+ I + G++ D  V N+
Sbjct: 164 KKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNS 223

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           L++MY +   +    +VF  I  +D VS+N +   +      ++ + +F QM  +G  P+
Sbjct: 224 LLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPD 283

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
             T+I +L A ++ S +  GK++H   +   L+ +  VGT+L  M+ + G +  A  A +
Sbjct: 284 KVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALE 343

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
           + A++D+  Y A+I + AQ G  E A + + +MR +G+  N  T  S LN CS    L  
Sbjct: 344 AFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGA 403

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
           G L+HS   + GH  D+ +  +L++MYA+CG +  A  +F     RD  SWN +I GY +
Sbjct: 404 GELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYAR 463

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK 492
                +A++ ++ M  EG  P  +TF+ +LSAC++     +GK     I +  GI     
Sbjct: 464 REDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILR-SGIKSNGH 522

Query: 493 HFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
               ++++  R G   E +N    T+   + + W +++   + HG+ E
Sbjct: 523 LANALMNMYRRCGSIMEAQNVFEGTR-ARDIISWNSMIAGHAQHGSYE 569



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 117/442 (26%), Positives = 208/442 (47%), Gaps = 13/442 (2%)

Query: 128 DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDT 187
           D+Q    E   + N  +    + N+     LV+  T        + IHA + + G   D 
Sbjct: 58  DEQHRGSEREDLSNAYQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDI 117

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK 247
            + N L++MY++   VS   +VF  +  +D +SWN+L S +       +  ++F +M   
Sbjct: 118 FLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTA 177

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           GF P+  T+I IL AC S +++ +GK++H+  I+     +  V  SL++MY K   L  A
Sbjct: 178 GFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSA 237

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367
              F  +  +D+ +Y  ++  YAQ    E  +  F +M  EGI  ++ T  + L+  +  
Sbjct: 238 RQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTP 297

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
           + L  G+ +H +AV  G   D+ V TAL  M+ +CG +  A+   +  A RD   +N +I
Sbjct: 298 SMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALI 357

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGI 487
               +HG  E+A E +  M  +G V +  T++ VL+ACS    +  G+   S I ++ G 
Sbjct: 358 AALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEV-GH 416

Query: 488 TPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE--LDEKD 545
           +  ++    +I +  R G                N +   +L+   SW+  I      +D
Sbjct: 417 SSDVQIGNSLISMYARCGDLPRARELF-------NTMPKRDLI---SWNAIIAGYARRED 466

Query: 546 AEKLLELEPKMESNYVFPSDIS 567
             + ++L  +M+S  V P  ++
Sbjct: 467 RGEAMKLYKQMQSEGVKPGRVT 488



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 7/172 (4%)

Query: 1    MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
            +E A+ VF +  E NVV+WNA++N YA+ G   K +  F  M     K    + +++L  
Sbjct: 840  LEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSA 899

Query: 61   FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
              +SG +  G ++  ++  + G +        LV +  + G    A  +  ++   PD  
Sbjct: 900  CNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAA 959

Query: 119  AWGAIITCLDQQG---CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD 167
             W  ++      G     + AA   N ++ ++  P  +VL S V A     D
Sbjct: 960  VWETLLGACRIHGNVALAEHAAN--NALKLNARNPAVYVLLSNVYAAAGRWD 1009


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/598 (36%), Positives = 341/598 (57%), Gaps = 1/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A +VF ++P  ++V+W +++ G A  G  ++  +LF  M++   +  K +  ++L+   +
Sbjct: 265 ATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNH 324

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ G+ VHA    +G   + ++  +++ MY+KCG  ++AL+VF  +K  +VV+W A+
Sbjct: 325 PEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAM 384

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q G   EA   FN M ES ++PN+    S++ A +     + G+ I   I + G+
Sbjct: 385 IAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGY 444

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            SD  V  AL+SMY + G +    RVFE I+ Q+ V+WNA+ + +  +E  D  L  F  
Sbjct: 445 GSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQA 504

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           +L +G KPN  TF  IL  C S   +  GK +H   +K  L+ +  V  +LV M+   G 
Sbjct: 505 LLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGD 564

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L  A   F+ +  +DL ++  II  + Q G+ ++A   F+ M+  GIK ++ T    LN 
Sbjct: 565 LMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNA 624

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+    L  GR LH++  +     D+ V T L++MY KCGSI+DA  VF     ++  SW
Sbjct: 625 CASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSW 684

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
             MI GY +HG G++ALE F  M  EG  PD ITFV  LSAC+H GLIEEG  HF S+K+
Sbjct: 685 TSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE 744

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            + I P ++H+ CM+D+ GRAG   E   FI + ++ P++ VW  LLGAC  H N+EL E
Sbjct: 745 -FNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAE 803

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           K A+K LEL+P     +V  S+I A  G W + + +R ++  +G+ K+P  SWIEVDG
Sbjct: 804 KAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDG 861



 Score =  298 bits (762), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 180/593 (30%), Positives = 300/593 (50%), Gaps = 43/593 (7%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AK++F  M E +V SWN LL GY + G  ++   L   M     K  K +  ++L   A+
Sbjct: 164 AKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACAD 223

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +  +  G+ ++ + ++ G   D F+  +L++M+ KCG   +A KVF  +   D+V W ++
Sbjct: 224 ARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSM 283

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           IT L + G  ++A  +F  M E  V+P++    SL+RA         G+ +HA + + G+
Sbjct: 284 ITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGW 343

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           +++  VG A++SMY + G +     VF+ +  ++ VSW A+ + F  +   D+    F +
Sbjct: 344 DTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNK 403

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M+  G +PN  TF+ IL ACSS S +  G+Q+  H I+     +  V T+L+ MY K G 
Sbjct: 404 MIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGS 463

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L+DA   F+ ++ +++ A+ A+IT+Y Q  + + AL  F+ +  EGIK N  T  S LN 
Sbjct: 464 LKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNV 523

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C    +L  G+ +H + +K G   D+ VS ALV+M+  CG +  A+ +F     RD  SW
Sbjct: 524 CKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSW 583

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK------- 476
           N +I G+V+HG  + A + F+MM + G  PD+ITF  +L+AC+    + EG++       
Sbjct: 584 NTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITE 643

Query: 477 ------------------------------HFSSIKKIYGITPTIKHFACMIDILGRAGK 506
                                         H    K +Y  T  I  +A      GR  +
Sbjct: 644 AAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQH----GRGKE 699

Query: 507 FTEIENFITETKLTPNALVWENLLGACSWHGNIE--LDEKDAEKLLELEPKME 557
             E+   + +  + P+ + +   L AC+  G IE  L    + K   +EP+ME
Sbjct: 700 ALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRME 752



 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 147/522 (28%), Positives = 269/522 (51%), Gaps = 10/522 (1%)

Query: 20  NALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK---GFANSGYIKAGQVVHAM 76
           NA+LN  +++G   + M +   +     +  + + S +L+    F N G    G+ ++  
Sbjct: 79  NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLG---DGERIYNH 135

Query: 77  AIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEA 136
             + G   D F+  +L++MY+KCG   +A ++F  +++ DV +W  ++    Q G  +EA
Sbjct: 136 IKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEA 195

Query: 137 AKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSM 196
            K+   M + SVKP++    S++ A  +  +   G  ++ +I K G+++D  VG AL++M
Sbjct: 196 FKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINM 255

Query: 197 YMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTF 256
           +++ G +   ++VF+ +  +D V+W ++ +    +    Q   +F +M  +G +P+   F
Sbjct: 256 HIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAF 315

Query: 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
           + +L+AC+    +  GK++HA   +   D    VGT+++ MY K G +EDA   FD +  
Sbjct: 316 VSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKG 375

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL 376
           +++ ++TA+I  +AQ G  + A   F KM   GI+ N  T  S L  CS  + L  G+ +
Sbjct: 376 RNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQI 435

Query: 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
               ++ G+  D  V TAL++MYAKCGS+ DA  VF+  + ++  +WN MI  YV+H   
Sbjct: 436 QDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQY 495

Query: 437 EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK-KHFSSIKKIYGITPTIKHFA 495
           + AL  F+ +L EG  P+  TF  +L+ C     +E GK  HF  +K   G+   +    
Sbjct: 496 DNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKA--GLESDLHVSN 553

Query: 496 CMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
            ++ +    G     +N   +     + + W  ++     HG
Sbjct: 554 ALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHG 594



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 141/468 (30%), Positives = 234/468 (50%), Gaps = 11/468 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A  VF  +   NVVSW A++ G+A+ G   +    F  M +   + ++ +  ++L  
Sbjct: 363 MEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGA 422

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ++   +K GQ +    I  G   D  +  +L+ MY+KCG   +A +VF +I   +VVAW
Sbjct: 423 CSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAW 482

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+IT   Q      A   F  + +  +KPN    TS++     +     G+ +H +I K
Sbjct: 483 NAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMK 542

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G ESD  V NALVSM++  G +     +F  +  +D VSWN + + F  +         
Sbjct: 543 AGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDY 602

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  M   G KP+  TF  +L AC+S   +  G++LHA   + + D + +VGT L+ MY K
Sbjct: 603 FKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTK 662

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +EDA   F  L  K+++++T++I  YAQ G  + AL+ F +M+ EG+K +  T    
Sbjct: 663 CGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGA 722

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHL-LDMFVSTALVAMYAKCGSIDDA-EAVFKGSALR 418
           L+ C+    +  G L H  ++K  ++   M     +V ++ + G +++A E + K     
Sbjct: 723 LSACAHAGLIEEG-LHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEP 781

Query: 419 DTASWNMMIGGYVKH---GLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           D+  W  ++G    H    L EKA +  ++ LD    P++    V+LS
Sbjct: 782 DSRVWGALLGACQVHLNVELAEKAAQK-KLELD----PNDNGVFVILS 824



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 129/269 (47%), Gaps = 33/269 (12%)

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL 376
           KD     A++   ++AG+   A++   ++    I+    T ++ L  C     L +G  +
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
           ++   K+G   D+F+   L+ MYAKCG+   A+ +F     +D  SWN+++GGYV+HGL 
Sbjct: 133 YNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLY 192

Query: 437 EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI--------------- 481
           E+A +    M+ +   PD+ TFV +L+AC+    +++G++ ++ I               
Sbjct: 193 EEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTAL 252

Query: 482 -------------KKIYGITPT--IKHFACMIDILGRAGKFTEIENF---ITETKLTPNA 523
                         K++   PT  +  +  MI  L R G+F +  N    + E  + P+ 
Sbjct: 253 INMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDK 312

Query: 524 LVWENLLGACSWHGNIELDEKDAEKLLEL 552
           + + +LL AC+    +E  +K   ++ E+
Sbjct: 313 VAFVSLLRACNHPEALEQGKKVHARMKEV 341


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/598 (36%), Positives = 341/598 (57%), Gaps = 1/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A +VF ++P  ++V+W +++ G A  G  ++  +LF  M++   +  K +  ++L+   +
Sbjct: 265 ATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNH 324

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ G+ VHA    +G   + ++  +++ MY+KCG  ++AL+VF  +K  +VV+W A+
Sbjct: 325 PEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAM 384

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q G   EA   FN M ES ++PN+    S++ A +     + G+ I   I + G+
Sbjct: 385 IAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGY 444

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            SD  V  AL+SMY + G +    RVFE I+ Q+ V+WNA+ + +  +E  D  L  F  
Sbjct: 445 GSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQA 504

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           +L +G KPN  TF  IL  C S   +  GK +H   +K  L+ +  V  +LV M+   G 
Sbjct: 505 LLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGD 564

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L  A   F+ +  +DL ++  II  + Q G+ ++A   F+ M+  GIK ++ T    LN 
Sbjct: 565 LMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNA 624

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+    L  GR LH++  +     D+ V T L++MY KCGSI+DA  VF     ++  SW
Sbjct: 625 CASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSW 684

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
             MI GY +HG G++ALE F  M  EG  PD ITFV  LSAC+H GLIEEG  HF S+K+
Sbjct: 685 TSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE 744

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            + I P ++H+ CM+D+ GRAG   E   FI + ++ P++ VW  LLGAC  H N+EL E
Sbjct: 745 -FNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAE 803

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           K A+K LEL+P     +V  S+I A  G W + + +R ++  +G+ K+P  SWIEVDG
Sbjct: 804 KAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDG 861



 Score =  298 bits (762), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 180/593 (30%), Positives = 300/593 (50%), Gaps = 43/593 (7%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AK++F  M E +V SWN LL GY + G  ++   L   M     K  K +  ++L   A+
Sbjct: 164 AKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACAD 223

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +  +  G+ ++ + ++ G   D F+  +L++M+ KCG   +A KVF  +   D+V W ++
Sbjct: 224 ARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSM 283

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           IT L + G  ++A  +F  M E  V+P++    SL+RA         G+ +HA + + G+
Sbjct: 284 ITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGW 343

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           +++  VG A++SMY + G +     VF+ +  ++ VSW A+ + F  +   D+    F +
Sbjct: 344 DTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNK 403

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M+  G +PN  TF+ IL ACSS S +  G+Q+  H I+     +  V T+L+ MY K G 
Sbjct: 404 MIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGS 463

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L+DA   F+ ++ +++ A+ A+IT+Y Q  + + AL  F+ +  EGIK N  T  S LN 
Sbjct: 464 LKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNV 523

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C    +L  G+ +H + +K G   D+ VS ALV+M+  CG +  A+ +F     RD  SW
Sbjct: 524 CKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSW 583

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK------- 476
           N +I G+V+HG  + A + F+MM + G  PD+ITF  +L+AC+    + EG++       
Sbjct: 584 NTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITE 643

Query: 477 ------------------------------HFSSIKKIYGITPTIKHFACMIDILGRAGK 506
                                         H    K +Y  T  I  +A      GR  +
Sbjct: 644 AAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQH----GRGKE 699

Query: 507 FTEIENFITETKLTPNALVWENLLGACSWHGNIE--LDEKDAEKLLELEPKME 557
             E+   + +  + P+ + +   L AC+  G IE  L    + K   +EP+ME
Sbjct: 700 ALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRME 752



 Score =  248 bits (634), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 147/522 (28%), Positives = 269/522 (51%), Gaps = 10/522 (1%)

Query: 20  NALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK---GFANSGYIKAGQVVHAM 76
           NA+LN  +++G   + M +   +     +  + + S +L+    F N G    G+ ++  
Sbjct: 79  NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLG---DGERIYNH 135

Query: 77  AIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEA 136
             + G   D F+  +L++MY+KCG   +A ++F  +++ DV +W  ++    Q G  +EA
Sbjct: 136 IKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEA 195

Query: 137 AKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSM 196
            K+   M + SVKP++    S++ A  +  +   G  ++ +I K G+++D  VG AL++M
Sbjct: 196 FKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINM 255

Query: 197 YMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTF 256
           +++ G +   ++VF+ +  +D V+W ++ +    +    Q   +F +M  +G +P+   F
Sbjct: 256 HIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAF 315

Query: 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
           + +L+AC+    +  GK++HA   +   D    VGT+++ MY K G +EDA   FD +  
Sbjct: 316 VSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKG 375

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL 376
           +++ ++TA+I  +AQ G  + A   F KM   GI+ N  T  S L  CS  + L  G+ +
Sbjct: 376 RNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQI 435

Query: 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
               ++ G+  D  V TAL++MYAKCGS+ DA  VF+  + ++  +WN MI  YV+H   
Sbjct: 436 QDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQY 495

Query: 437 EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK-KHFSSIKKIYGITPTIKHFA 495
           + AL  F+ +L EG  P+  TF  +L+ C     +E GK  HF  +K   G+   +    
Sbjct: 496 DNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKA--GLESDLHVSN 553

Query: 496 CMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
            ++ +    G     +N   +     + + W  ++     HG
Sbjct: 554 ALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHG 594



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 142/468 (30%), Positives = 235/468 (50%), Gaps = 11/468 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A  VF  +   NVVSW A++ G+A+ G   +    F  M +   + ++ +  ++L  
Sbjct: 363 MEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGA 422

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ++   +K GQ +    I  G   D  +  +L+ MY+KCG   +A +VF +I   +VVAW
Sbjct: 423 CSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAW 482

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+IT   Q      A   F  + +  +KPN    TS++     +     G+ +H +I K
Sbjct: 483 NAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMK 542

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G ESD  V NALVSM++  G +     +F  +  +D VSWN + + F  +         
Sbjct: 543 AGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDY 602

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  M   G KP+  TF  +L AC+S   +  G++LHA   + + D + +VGT L+ MY K
Sbjct: 603 FKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTK 662

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +EDA   F  L  K+++++T++IT YAQ G  + AL+ F +M+ EG+K +  T    
Sbjct: 663 CGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGA 722

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHL-LDMFVSTALVAMYAKCGSIDDA-EAVFKGSALR 418
           L+ C+    +  G L H  ++K  ++   M     +V ++ + G +++A E + K     
Sbjct: 723 LSACAHAGLIEEG-LHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEP 781

Query: 419 DTASWNMMIGGYVKH---GLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           D+  W  ++G    H    L EKA +  ++ LD    P++    V+LS
Sbjct: 782 DSRVWGALLGACQVHLNVELAEKAAQK-KLELD----PNDNGVFVILS 824



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 129/269 (47%), Gaps = 33/269 (12%)

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL 376
           KD     A++   ++AG+   A++   ++    I+    T ++ L  C     L +G  +
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
           ++   K+G   D+F+   L+ MYAKCG+   A+ +F     +D  SWN+++GGYV+HGL 
Sbjct: 133 YNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLY 192

Query: 437 EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI--------------- 481
           E+A +    M+ +   PD+ TFV +L+AC+    +++G++ ++ I               
Sbjct: 193 EEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTAL 252

Query: 482 -------------KKIYGITPT--IKHFACMIDILGRAGKFTEIENF---ITETKLTPNA 523
                         K++   PT  +  +  MI  L R G+F +  N    + E  + P+ 
Sbjct: 253 INMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDK 312

Query: 524 LVWENLLGACSWHGNIELDEKDAEKLLEL 552
           + + +LL AC+    +E  +K   ++ E+
Sbjct: 313 VAFVSLLRACNHPEALEQGKKVHARMKEV 341


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/598 (35%), Positives = 340/598 (56%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R+F      +VVSWN +++GYA  G GQ+  +LF  M+    +  KF+  ++L   ++
Sbjct: 98  ARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSS 157

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G+ VH   +  G A +  +  +L+ MY+KCG   +A +VF  +   D V+W  +
Sbjct: 158 PAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTL 217

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
                + G  QE+ K ++ M +  V+P++    +++ A         G+ IHA I +   
Sbjct: 218 TGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEH 277

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            SD  V  AL  MY++ G V     VFE + ++D ++WN +     D    ++   +F++
Sbjct: 278 HSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHR 337

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           ML +   P+  T++ IL AC+    +  GK++HA  +K  L  +   G +L++MY K+G 
Sbjct: 338 MLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGS 397

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++DA   FD +  +D+ ++TA++  YA  G+   +   F+KM  +G+++N+ T    L  
Sbjct: 398 MKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKA 457

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           CS    L  G+ +H+  VK G   D+ V+ AL++MY KCGS++DA  V +G + RD  +W
Sbjct: 458 CSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTW 517

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +IGG  ++G G +AL+ F +M  E   P+  TFV V+SAC    L+EEG++ F+S++K
Sbjct: 518 NTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRK 577

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            YGI PT KH+ACM+DIL RAG   E E+ I      P+A +W  LL AC  HGN+E+ E
Sbjct: 578 DYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGE 637

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           + AE+ L+LEP+    YV  S I A  G W D + +R L+  +G+KKEP  SWIEV G
Sbjct: 638 QAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAG 695



 Score =  255 bits (651), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 140/472 (29%), Positives = 249/472 (52%), Gaps = 2/472 (0%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +  G+ VH   +R G   + ++  +L+ +Y  CG  + A ++F +  +  VV+W  +I+ 
Sbjct: 60  LAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISG 119

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
              +G  QEA  +F LM++  ++P++F   S++ A +       G  +H  + + G  ++
Sbjct: 120 YAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANN 179

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             VGNAL+SMY + G V    RVF+A+A +D VSW  L   + +     + L+ ++ ML 
Sbjct: 180 ATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQ 239

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           +G +P+  T++ +L AC SL+ +  GKQ+HA  ++     +  V T+L  MY K G ++D
Sbjct: 240 EGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKD 299

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A   F+ L N+D+ A+  +I     +G+ E A   F +M  E +  +  T  + L+ C+ 
Sbjct: 300 AREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACAR 359

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
              LA G+ +H+ AVK G + D+    AL+ MY+K GS+ DA  VF     RD  SW  +
Sbjct: 360 PGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTAL 419

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           +GGY   G   ++   F+ ML +G   ++IT++ VL ACS+   ++ GK+  + + K  G
Sbjct: 420 VGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKA-G 478

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           I   +     ++ +  + G   +    ++E   T + + W  L+G  + +G 
Sbjct: 479 IFADLAVANALMSMYFKCGSVEDAIR-VSEGMSTRDVVTWNTLIGGLAQNGR 529



 Score =  224 bits (571), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 117/396 (29%), Positives = 214/396 (54%), Gaps = 4/396 (1%)

Query: 137 AKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSM 196
           A +   + +   + + +    L+++  +  D   G+ +H  I ++G + +  + N L+ +
Sbjct: 29  ADVLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKL 88

Query: 197 YMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTF 256
           Y+  G V+   R+F+  +++  VSWN + S +       +   +F  M  +G +P+  TF
Sbjct: 89  YVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTF 148

Query: 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
           + IL ACSS + + +G+++H   ++  L  N  VG +L+ MY K G + DA   FD++A+
Sbjct: 149 VSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMAS 208

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL 376
           +D  ++T +  +YA++G A+ +LK +  M  EG++ +  T  + L+ C  +A L  G+ +
Sbjct: 209 RDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQI 268

Query: 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
           H+  V++ H  D+ VSTAL  MY KCG++ DA  VF+    RD  +WN MIGG V  G  
Sbjct: 269 HAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQL 328

Query: 437 EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFA 495
           E+A   F  ML E   PD +T++ +LSAC+  G +  GK+ H  ++K   G+   ++   
Sbjct: 329 EEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKD--GLVSDVRFGN 386

Query: 496 CMIDILGRAGKFTEIENFITETKLTPNALVWENLLG 531
            +I++  +AG   +    + +     + + W  L+G
Sbjct: 387 ALINMYSKAGSMKDARQ-VFDRMPKRDVVSWTALVG 421



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 87/161 (54%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A++VF  MP+ +VVSW AL+ GYA+ G   +    F  M     + +K +   VLK 
Sbjct: 398 MKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKA 457

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +N   +K G+ +HA  ++ G   D  ++ +L+ MY KCG  ++A++V   +   DVV W
Sbjct: 458 CSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTW 517

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRA 161
             +I  L Q G   EA + F +M+   ++PN     +++ A
Sbjct: 518 NTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSA 558


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/598 (38%), Positives = 332/598 (55%), Gaps = 2/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDG--QKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           AK VF+ +   +VVSWN ++NGY++ G      VM LF  M+      +  + + V    
Sbjct: 59  AKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAA 118

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           +       G++ HA+AI++    D F+  SL++MY K GL   A KVF  + + + V+W 
Sbjct: 119 STLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWA 178

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            +I+    Q    EA  +F LMR      N+FV TS++ A T       G+ IH +  K 
Sbjct: 179 TMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKN 238

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G  S   VGNALV+MY + G +    + FE  + ++S++W+A+ + +      D+ L++F
Sbjct: 239 GLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLF 298

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
             M L G +P+  TF+ ++ ACS L     GKQ+H + +K   +    V T+LVDMY K 
Sbjct: 299 SSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKC 358

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
             + DA   FD L   D+  +T++I  Y Q GE E AL  + +M +EGI  NE T+AS L
Sbjct: 359 SSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVL 418

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
             CS +A L  G+ +H+  VK G  L++ + +AL  MYAKCG + D   VF+    RD  
Sbjct: 419 KACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVI 478

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SWN MI G  ++G G++ALE F  M  EG  PD +TFV +LSACSHMGL+E G  +F  +
Sbjct: 479 SWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMM 538

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
              +G+ P ++H+ACM+DIL RAGK  E   F     +     +W  +LGAC  + N EL
Sbjct: 539 FDEFGMDPRVEHYACMVDILSRAGKLKEAIEFTESATIDHGMCLWRIILGACRNYRNYEL 598

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
                EKL+EL  +  S YV  S I +  GRW D   VR ++  +G+ KEP CSWIE+
Sbjct: 599 GAYAGEKLMELGSQESSAYVLLSSIYSALGRWEDVERVRRMMKLRGVSKEPGCSWIEL 656



 Score =  245 bits (625), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 165/526 (31%), Positives = 254/526 (48%), Gaps = 36/526 (6%)

Query: 50  SKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF 109
           S  S  T L  + ++  ++ G+ +HA  I+   +   +++ SLV++Y+KC     A  VF
Sbjct: 5   SNRSFFTALLQYTHNRSLQKGKALHAQIIKSSSSC-VYIANSLVNLYAKCQRLREAKFVF 63

Query: 110 YRIKDPDVVAWGAIITCLDQQGC--CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD 167
            RI++ DVV+W  II    Q G        ++F  MR  +  PN      +  A +   D
Sbjct: 64  ERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVD 123

Query: 168 QRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR 227
              G   HAV  K     D  VG++L++MY + G      +VF+ +  ++SVSW  + S 
Sbjct: 124 AAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISG 183

Query: 228 FQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGN 287
           +   +   + L +F  M  +    N   F  +L A +    V  GKQ+H   +K+ L   
Sbjct: 184 YASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSI 243

Query: 288 HVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL 347
             VG +LV MY K G L+DA   F++ ++K+   ++A+IT YAQ+G+++ ALK F  M L
Sbjct: 244 VSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHL 303

Query: 348 EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
            GI+ +EFT    +N CS +     G+ +H   +K G    ++V TALV MYAKC SI D
Sbjct: 304 SGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVD 363

Query: 408 AEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
           A   F      D   W  MIGGYV++G  E AL  +  M  EG +P+E+T   VL ACS 
Sbjct: 364 ARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSS 423

Query: 468 MGLIEEGKK-HFSSIKKIYGITPTIK-----------------------------HFACM 497
           +  +E+GK+ H  ++K  +G+   I                               +  M
Sbjct: 424 LAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAM 483

Query: 498 IDILGRAGKFTEIENFITETKL---TPNALVWENLLGACSWHGNIE 540
           I  L + G   E      E +L    P+ + + N+L ACS  G +E
Sbjct: 484 ISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVE 529



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 97/207 (46%), Gaps = 16/207 (7%)

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
           +L  G+ LH+  +K+     ++++ +LV +YAKC  + +A+ VF+    +D  SWN +I 
Sbjct: 21  SLQKGKALHAQIIKSSSSC-VYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIIN 79

Query: 429 GYVKHGL--GEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK-KHFSSIK--- 482
           GY +HG       +E F+ M  E   P+  TF  V +A S +     G+  H  +IK   
Sbjct: 80  GYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDS 139

Query: 483 -KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
            +   +  ++ +  C   +   A K       + +T    N++ W  ++   +    +  
Sbjct: 140 CRDVFVGSSLMNMYCKAGLTPEARK-------VFDTMPERNSVSWATMISGYASQ-KLAA 191

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISA 568
           +     +L+  E + E+ +VF S +SA
Sbjct: 192 EALGLFRLMRREEEGENEFVFTSVLSA 218


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/599 (35%), Positives = 336/599 (56%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ VF  M + +VVSW   + GYA+ G  +    +F  M+      ++ +  +VL  
Sbjct: 177 IEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNA 236

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           F++   +K G+ VH+  +  G   D  +  +LV MY+KCG   +  +VF ++ + D++AW
Sbjct: 237 FSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAW 296

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I  L + G  +EA++++N M+   V PN+     L+ A   +     G+ IH+ + K
Sbjct: 297 NTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAK 356

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GF SD  V NAL+SMY   G +     VF+ +  +D +SW A+           + L +
Sbjct: 357 AGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTV 416

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           + +M   G +PN  T+  IL ACSS + + +G+++H   ++  L  +  VG +LV+MY  
Sbjct: 417 YQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSM 476

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G ++DA   FD +  +D+ AY A+I  YA     + ALK F +++ EG+K ++ T  + 
Sbjct: 477 CGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINM 536

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           LN C+   +L   R +H++  K G   D  V  ALV+ YAKCGS  DA  VF+    R+ 
Sbjct: 537 LNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNV 596

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SWN +IGG  +HG G+ AL+ F  M  EG  PD +TFV +LSACSH GL+EEG+++F S
Sbjct: 597 ISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCS 656

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + + + I PTI+H+ CM+D+LGRAG+  E E  I       N  +W  LLGAC  HGN+ 
Sbjct: 657 MSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVP 716

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           + E+ AE  L+L+      YV  S + A  G W+  + +R L+  +G+ KEP  SWI+V
Sbjct: 717 VAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQV 775



 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 168/559 (30%), Positives = 297/559 (53%), Gaps = 9/559 (1%)

Query: 1   MELAKRVFKSMP--ELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVL 58
           +E A++V+K +   E  V SWNA++ GY + G  +K + L   M+       + ++ + L
Sbjct: 74  IEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFL 133

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
               + G ++ G+ +H  A++ G   D  ++  +++MY+KCG  + A +VF +++   VV
Sbjct: 134 SSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVV 193

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +W   I      G  + A +IF  M +  V PN+    S++ A +     + G+++H+ I
Sbjct: 194 SWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRI 253

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
              G ESDT VG ALV MY + G      +VFE + ++D ++WN +     +    ++  
Sbjct: 254 LNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEAS 313

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            ++ QM  +G  PN  T++++L AC + + + +GK++H+   K     +  V  +L+ MY
Sbjct: 314 EVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMY 373

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            + G ++DA + FD +  KD+ ++TA+I   A++G    AL  +++M+  G++ N  T  
Sbjct: 374 SRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYT 433

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S LN CS  A L  GR +H   V+ G   D  V   LV MY+ CGS+ DA  VF     R
Sbjct: 434 SILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQR 493

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D  ++N MIGGY  H LG++AL+ F  + +EG  PD++T++ +L+AC++ G +E  ++  
Sbjct: 494 DIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIH 553

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           + ++K  G          ++    + G F++  + + E     N + W  ++G  + HG 
Sbjct: 554 TLVRK-GGFFSDTSVGNALVSTYAKCGSFSD-ASIVFEKMTKRNVISWNAIIGGSAQHGR 611

Query: 539 IELDEKDAEKLLELEPKME 557
                +DA +L E   KME
Sbjct: 612 ----GQDALQLFE-RMKME 625



 Score =  232 bits (592), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 127/410 (30%), Positives = 210/410 (51%), Gaps = 2/410 (0%)

Query: 69  AGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK--DPDVVAWGAIITC 126
           AG+ VH   I+     D++   +L++MY +CG  + A +V+ ++   +  V +W A++  
Sbjct: 41  AGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVG 100

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             Q G  ++A K+   M++  + P++  + S + +    G    G  IH    + G   D
Sbjct: 101 YIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFD 160

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             V N +++MY + G +     VF+ +  +  VSW      + D    +    IF +M  
Sbjct: 161 VKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQ 220

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           +G  PN  T+I +L A SS + + +GK +H+  +    + +  VGT+LV MY K G  +D
Sbjct: 221 EGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKD 280

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
               F+ L N+DL A+  +I   A+ G  E A + + +M+ EG+  N+ T    LN C  
Sbjct: 281 CRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVN 340

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
            A L  G+ +HS   K G   D+ V  AL++MY++CGSI DA  VF     +D  SW  M
Sbjct: 341 SAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAM 400

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
           IGG  K G G +AL  ++ M   G  P+ +T+  +L+ACS    +E G++
Sbjct: 401 IGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRR 450



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 118/404 (29%), Positives = 201/404 (49%), Gaps = 4/404 (0%)

Query: 136 AAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVS 195
           A  +   +++   + N      +++   E  D   G  +H  I ++    D    NAL++
Sbjct: 7   AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALIN 66

Query: 196 MYMENGRVSYGSRVFEAIAHQDSV--SWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
           MY++ G +    +V++ +++ +    SWNA+   +  Y   ++ L++  QM   G  P+ 
Sbjct: 67  MYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDR 126

Query: 254 CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
            T +  L +C S   + +G+++H   ++  L  +  V   +++MY K G +E+A   FD 
Sbjct: 127 TTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDK 186

Query: 314 LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG 373
           +  K + ++T  I  YA  G +E A + F+KM  EG+  N  T  S LN  S  A L  G
Sbjct: 187 MEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWG 246

Query: 374 RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKH 433
           + +HS  +  GH  D  V TALV MYAKCGS  D   VF+    RD  +WN MIGG  + 
Sbjct: 247 KAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEG 306

Query: 434 GLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKH 493
           G  E+A E +  M  EG +P++IT+V++L+AC +   +  GK+  S + K  G T  I  
Sbjct: 307 GYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKA-GFTSDIGV 365

Query: 494 FACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
              +I +  R G   +    + +  +  + + W  ++G  +  G
Sbjct: 366 QNALISMYSRCGSIKD-ARLVFDKMVRKDVISWTAMIGGLAKSG 408



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 166/335 (49%), Gaps = 11/335 (3%)

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
           D  + +   +  +G + N   ++ +LK C  + D+  G+Q+H H I+H    +     +L
Sbjct: 5   DGAVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNAL 64

Query: 295 VDMYDKSGCLEDAGVAFDSLA--NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           ++MY + G +E+A   +  L+   + + ++ A++  Y Q G  E ALK  R+M+  G+  
Sbjct: 65  INMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAP 124

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
           +  T+ S L+ C     L  GR +H  A++ G L D+ V+  ++ MYAKCGSI++A  VF
Sbjct: 125 DRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVF 184

Query: 413 KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE 472
                +   SW + IGGY   G  E A E F+ M  EG VP+ IT++ VL+A S    ++
Sbjct: 185 DKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALK 244

Query: 473 EGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
            GK   S I      + T    A ++ +  + G + +    + E  +  + + W  ++G 
Sbjct: 245 WGKAVHSRILNAGHESDTAVGTA-LVKMYAKCGSYKDCRQ-VFEKLVNRDLIAWNTMIGG 302

Query: 533 CSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            +  G         E+  E+  +M+   V P+ I+
Sbjct: 303 LAEGGYW-------EEASEVYNQMQREGVMPNKIT 330



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 113/237 (47%), Gaps = 13/237 (5%)

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST 393
           E + A+   + ++ +G + N       L  C  V  L  GR +H   ++   + D +   
Sbjct: 3   EKDGAVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVN 62

Query: 394 ALVAMYAKCGSIDDAEAVFKGSAL--RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGY 451
           AL+ MY +CGSI++A  V+K  +   R   SWN M+ GY+++G  EKAL+  R M   G 
Sbjct: 63  ALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGL 122

Query: 452 VPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEI 510
            PD  T +  LS+C   G +E G++ HF +++   G+   +K   C++++  + G   E 
Sbjct: 123 APDRTTIMSFLSSCKSPGALEWGREIHFQAMQA--GLLFDVKVANCILNMYAKCGSIEEA 180

Query: 511 ENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
                + +   + + W   +G  +       D   +E   E+  KME   V P+ I+
Sbjct: 181 REVFDKME-KKSVVSWTITIGGYA-------DCGRSETAFEIFQKMEQEGVVPNRIT 229


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/596 (36%), Positives = 332/596 (55%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF  M   +VVSW  ++ GYA+ G  +    +F  M+      ++ +   VL  F+ 
Sbjct: 298 AREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSG 357

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +K G+ VH+  +  G   D  +  +LV MY+KCG   +  +VF ++ + D++AW  +
Sbjct: 358 PAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTM 417

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I  L + G  +EA++I++ M+   + PN+     L+ A         G  IH+ + K GF
Sbjct: 418 IGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGF 477

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D  V NAL+SMY   G +     +F  +  +D +SW A+           + L +F  
Sbjct: 478 MFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQD 537

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G KPN  T+  IL ACSS + + +G+++H   I+  L  +  V  +LV+MY   G 
Sbjct: 538 MQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGS 597

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++DA   FD +  +D+ AY A+I  YA     + ALK F +++ EG+K ++ T  + LN 
Sbjct: 598 VKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNA 657

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+   +L   + +HS+ +K G+L D  +  ALV+ YAKCGS  DA  VF     R+  SW
Sbjct: 658 CANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISW 717

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +IGG  +HG G+  L+ F  M  EG  PD +TFV +LSACSH GL+EEG+++F S+ +
Sbjct: 718 NAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSR 777

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            +GITPTI+H+ CM+D+LGRAG+  E+E  I       N  +W  LLGAC  HGN+ + E
Sbjct: 778 DFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAE 837

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           + AE  L+L+P   + YV  S + A  G W+  + +R L+  +G+ KEP  SWIEV
Sbjct: 838 RAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEV 893



 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 163/569 (28%), Positives = 302/569 (53%), Gaps = 11/569 (1%)

Query: 1   MELAKRVFKSM--PELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVL 58
           +E A++V+  +   E  V SWNA++ GY + G  ++ + L   M+       + +   +L
Sbjct: 192 IEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLL 251

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
               +   ++ G+ +H  A++     D  ++  +++MY+KCG    A +VF +++   VV
Sbjct: 252 SSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVV 311

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +W  II      G  + A +IF  M++  V PN+    +++ A +     + G+++H+ I
Sbjct: 312 SWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHI 371

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
              G ESD  VG ALV MY + G      +VFE + ++D ++WN +     +  + ++  
Sbjct: 372 LNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEAS 431

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            I++QM  +G  PN  T++++L AC + + + +G+++H+  +K     +  V  +L+ MY
Sbjct: 432 EIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMY 491

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            + G ++DA + F+ +  KD+ ++TA+I   A++G    AL  F+ M+  G+K N  T  
Sbjct: 492 ARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYT 551

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S LN CS  A L  GR +H   ++ G   D  V+  LV MY+ CGS+ DA  VF     R
Sbjct: 552 SILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQR 611

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D  ++N MIGGY  H LG++AL+ F  + +EG  PD++T++ +L+AC++ G +E  K+  
Sbjct: 612 DIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIH 671

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           S + K   ++ T    A ++    + G F++    + +  +  N + W  ++G C+ HG 
Sbjct: 672 SLVLKDGYLSDTSLGNA-LVSTYAKCGSFSDAL-LVFDKMMKRNVISWNAIIGGCAQHGR 729

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDIS 567
                   + +L+L  +M+   + P  ++
Sbjct: 730 -------GQDVLQLFERMKMEGIKPDIVT 751



 Score =  234 bits (598), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 149/507 (29%), Positives = 246/507 (48%), Gaps = 35/507 (6%)

Query: 69  AGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD--VVAWGAIITC 126
           AG+ VH   I+    LD++   +L++MY +CG  + A +V+ ++   +  V +W A++  
Sbjct: 159 AGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVG 218

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             Q G  +EA K+   M++  +   +     L+ +        CG  IH    K     D
Sbjct: 219 YVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFD 278

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             V N +++MY + G +     VF+ +  +  VSW  +   + D    +    IF +M  
Sbjct: 279 VNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQ 338

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           +G  PN  T+I +L A S  + + +GK +H+H +    + +  VGT+LV MY K G  +D
Sbjct: 339 EGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKD 398

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
               F+ L N+DL A+  +I   A+ G  E A + + +M+ EG+  N+ T    LN C  
Sbjct: 399 CRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVN 458

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
              L  GR +HS  VK G + D+ V  AL++MYA+CGSI DA  +F     +D  SW  M
Sbjct: 459 PTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAM 518

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS-----------HMGLIEEG- 474
           IGG  K GLG +AL  F+ M   G  P+ +T+  +L+ACS           H  +IE G 
Sbjct: 519 IGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGL 578

Query: 475 --KKHFS-SIKKIYGITPTIKHFACMID-------------ILGRAG-----KFTEIENF 513
               H + ++  +Y +  ++K    + D             I G A      +  ++ + 
Sbjct: 579 ATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDR 638

Query: 514 ITETKLTPNALVWENLLGACSWHGNIE 540
           + E  L P+ + + N+L AC+  G++E
Sbjct: 639 LQEEGLKPDKVTYINMLNACANSGSLE 665



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 124/452 (27%), Positives = 216/452 (47%), Gaps = 35/452 (7%)

Query: 135 EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALV 194
            A  +   +++   + N      +++   E  D   G  +H  I ++    D    NAL+
Sbjct: 124 RAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALI 183

Query: 195 SMYMENGRVSYGSRVFEAIAHQDSV--SWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           +MY++ G +    +V+  + H +    SWNA+   +  Y   ++ L++  +M   G    
Sbjct: 184 NMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALG 243

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
             T + +L +C S S +  G+++H   +K  L  +  V   +++MY K G + +A   FD
Sbjct: 244 RATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFD 303

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
            +  K + ++T II  YA  G +E+A + F+KM+ EG+  N  T  + LN  S  A L  
Sbjct: 304 KMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKW 363

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
           G+ +HS  +  GH  D+ V TALV MYAKCGS  D   VF+    RD  +WN MIGG  +
Sbjct: 364 GKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAE 423

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK--------- 483
            G  E+A E +  M  EG +P++IT+V++L+AC +   +  G++  S + K         
Sbjct: 424 GGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISV 483

Query: 484 ------IYGITPTIK---------------HFACMIDILGRAGKFTE---IENFITETKL 519
                 +Y    +IK                +  MI  L ++G   E   +   + +  L
Sbjct: 484 QNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGL 543

Query: 520 TPNALVWENLLGACSWHGNIELDEKDAEKLLE 551
            PN + + ++L ACS    ++   +  ++++E
Sbjct: 544 KPNRVTYTSILNACSSPAALDWGRRIHQQVIE 575



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 165/335 (49%), Gaps = 11/335 (3%)

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
           D+ + +   +  +G + N C ++ +LK C  + D+  G+++H H I+H    +     +L
Sbjct: 123 DRAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNAL 182

Query: 295 VDMYDKSGCLEDAGVAFDSL--ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           ++MY + G +E+A   ++ L    + + ++ A++  Y Q G  E ALK  R+M+  G+  
Sbjct: 183 INMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLAL 242

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
              T    L+ C   + L  GR +H  A+K   L D+ V+  ++ MYAKCGSI +A  VF
Sbjct: 243 GRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVF 302

Query: 413 KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE 472
                +   SW ++IGGY   G  E A E F+ M  EG VP+ IT++ VL+A S    ++
Sbjct: 303 DKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALK 362

Query: 473 EGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
            GK   S I    G    +     ++ +  + G + +    + E  +  + + W  ++G 
Sbjct: 363 WGKTVHSHILNA-GHESDLAVGTALVKMYAKCGSYKDCRQ-VFEKLVNRDLIAWNTMIGG 420

Query: 533 CSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            +  GN        E+  E+  +M+   + P+ I+
Sbjct: 421 LAEGGNW-------EEASEIYHQMQREGMMPNKIT 448


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/597 (35%), Positives = 337/597 (56%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F +MP+ +++SWNA++ GYA   D  + M L+  M+    K  + +   +L   AN
Sbjct: 384 ARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACAN 443

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           S     G+++H   +R G   +  L+ +L++MY +CG    A  VF   +  DV++W ++
Sbjct: 444 SSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSM 503

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q G  + A K+F  M+   ++P+     S++           G+ IH  I + G 
Sbjct: 504 IAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGL 563

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           + D  +GNAL++MY+  G +     VF ++ H+D +SW A+     D     + + +F+Q
Sbjct: 564 QLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQ 623

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +GF+P   TF  ILK C+S + +  GK++ A+ +    + +  VG +L+  Y KSG 
Sbjct: 624 MQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGS 683

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           + DA   FD + ++D+ ++  II  YAQ G  + A++   +M+ + +  N+F+  S LN 
Sbjct: 684 MTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNA 743

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           CS  + L  G+ +H+  VK     D+ V  AL++MYAKCGS  +A+ VF     ++  +W
Sbjct: 744 CSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTW 803

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N MI  Y +HGL  KAL  F  M  EG  PD  TF  +LSAC+H GL+ EG + FSS++ 
Sbjct: 804 NAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMES 863

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            YG+ PTI+H+ C++ +LGRA +F E E  I +    P+A VWE LLGAC  HGNI L E
Sbjct: 864 EYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAE 923

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
             A   L+L  +  + Y+  S++ A  GRW+D + +R ++  +GI+KEP  SWIEVD
Sbjct: 924 HAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVD 980



 Score =  274 bits (701), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 162/560 (28%), Positives = 285/560 (50%), Gaps = 9/560 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A +VFK MP  +V+SWN+L++ YA+ G  +K   LF  M++     +K +  ++L    +
Sbjct: 81  AHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYS 140

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ G+ +H+  I+ G   D  +  SL+ MY KCG    A +VF  I   DVV++  +
Sbjct: 141 PAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTM 200

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    Q+   +E   +F  M    + P++    +L+ A T       G+ IH +  + G 
Sbjct: 201 LGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGL 260

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            SD  VG ALV+M +  G V    + F+  A +D V +NAL +    +    +    +Y+
Sbjct: 261 NSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYR 320

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G   N  T++ IL ACS+   +  GK +H+H  +     +  +G +L+ MY + G 
Sbjct: 321 MRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGD 380

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L  A   F ++  +DL ++ AII  YA+  +   A++ +++M+ EG+K    T    L+ 
Sbjct: 381 LPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSA 440

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+  +  A+G+++H   +++G   +  ++ AL+ MY +CGS+ +A+ VF+G+  RD  SW
Sbjct: 441 CANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISW 500

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N MI G+ +HG  E A + F+ M +E   PD ITF  VLS C +   +E GK+    I +
Sbjct: 501 NSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITE 560

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
             G+   +     +I++  R G   +  N     +   + + W  ++G C+       D+
Sbjct: 561 -SGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHR-DVMSWTAMIGGCA-------DQ 611

Query: 544 KDAEKLLELEPKMESNYVFP 563
            +  K +EL  +M++    P
Sbjct: 612 GEDMKAIELFWQMQNEGFRP 631



 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 156/536 (29%), Positives = 279/536 (52%), Gaps = 6/536 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AK+ FK   + +VV +NAL+   A+ G   +    +  M+      ++ +  ++L   + 
Sbjct: 283 AKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACST 342

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           S  ++AG+++H+     G + D  +  +L+ MY++CG    A ++FY +   D+++W AI
Sbjct: 343 SKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAI 402

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    ++    EA +++  M+   VKP +     L+ A   +     G+ IH  I + G 
Sbjct: 403 IAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGI 462

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           +S+  + NAL++MY   G +     VFE    +D +SWN++ +    + S +   ++F +
Sbjct: 463 KSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQE 522

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +  +P+  TF  +L  C +   +  GKQ+H    +  L  +  +G +L++MY + G 
Sbjct: 523 MQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGS 582

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L+DA   F SL ++D+ ++TA+I   A  GE   A++ F +M+ EG +  + T +S L  
Sbjct: 583 LQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKV 642

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+  A L  G+ + +  + +G+ LD  V  AL++ Y+K GS+ DA  VF     RD  SW
Sbjct: 643 CTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSW 702

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI-- 481
           N +I GY ++GLG+ A+E    M ++  VP++ +FV +L+ACS    +EEGK+  + I  
Sbjct: 703 NKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVK 762

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           +K+ G          M    G  G+  E+ + I E     N + W  ++ A + HG
Sbjct: 763 RKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEK----NVVTWNAMINAYAQHG 814



 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 150/478 (31%), Positives = 246/478 (51%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF  +   +VVS+N +L  YA+    ++ + LF  M        K +   +L  F  
Sbjct: 182 ARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTT 241

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G+ +H + +  G   D  +  +LV M  +CG  D+A + F    D DVV + A+
Sbjct: 242 PSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNAL 301

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I  L Q G   EA + +  MR   V  N+    S++ A + +     G+ IH+ I + G 
Sbjct: 302 IAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGH 361

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            SD  +GNAL+SMY   G +     +F  +  +D +SWNA+ + +   E   + +R++ Q
Sbjct: 362 SSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQ 421

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +G KP   TF+ +L AC++ S    GK +H   ++  +  N  +  +L++MY + G 
Sbjct: 422 MQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGS 481

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L +A   F+    +D+ ++ ++I  +AQ G  E A K F++M+ E ++ +  T AS L+G
Sbjct: 482 LMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSG 541

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C     L  G+ +H    ++G  LD+ +  AL+ MY +CGS+ DA  VF     RD  SW
Sbjct: 542 CKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSW 601

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
             MIGG    G   KA+E F  M +EG+ P + TF  +L  C+    ++EGKK  + I
Sbjct: 602 TAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYI 659



 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 154/497 (30%), Positives = 259/497 (52%), Gaps = 7/497 (1%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           +HA  +      D FLS  L++MY KC    +A +VF  +   DV++W ++I+C  QQG 
Sbjct: 49  IHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGF 108

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
            ++A ++F  M+ +   PN+    S++ A     +   G+ IH+ I K G++ D  V N+
Sbjct: 109 KKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNS 168

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           L+SMY + G +    +VF  I+ +D VS+N +   +       + L +F QM  +G  P+
Sbjct: 169 LLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPD 228

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
             T+I +L A ++ S +  GK++H  T++  L+ +  VGT+LV M  + G ++ A  AF 
Sbjct: 229 KVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFK 288

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
             A++D+  Y A+I + AQ G    A + + +MR +G+  N  T  S LN CS    L  
Sbjct: 289 GTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEA 348

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
           G+L+HS   + GH  D+ +  AL++MYA+CG +  A  +F     RD  SWN +I GY +
Sbjct: 349 GKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYAR 408

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK 492
                +A+  ++ M  EG  P  +TF+ +LSAC++     +GK     I +  GI     
Sbjct: 409 REDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILR-SGIKSNGH 467

Query: 493 HFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLL-- 550
               ++++  R G   E +N    T+   + + W +++   + HG+ E   K  +++   
Sbjct: 468 LANALMNMYRRCGSLMEAQNVFEGTQ-ARDVISWNSMIAGHAQHGSYETAYKLFQEMQNE 526

Query: 551 ELEPKMESNYVFPSDIS 567
           ELEP    N  F S +S
Sbjct: 527 ELEP---DNITFASVLS 540



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 152/292 (52%), Gaps = 5/292 (1%)

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
           T++ +L+ C+    +   K++HA  ++  +  +  +   L++MY K   + DA   F  +
Sbjct: 29  TYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEM 88

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
             +D+ ++ ++I+ YAQ G  + A + F +M+  G   N+ T  S L  C   A L NG+
Sbjct: 89  PRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGK 148

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
            +HS  +K G+  D  V  +L++MY KCG +  A  VF G + RD  S+N M+G Y +  
Sbjct: 149 KIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKA 208

Query: 435 LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKH 493
             ++ L  F  M  EG  PD++T++ +L A +   +++EGK+ H  ++++  G+   I+ 
Sbjct: 209 YVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEE--GLNSDIRV 266

Query: 494 FACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG-NIELDEK 544
              ++ +  R G     +     T    + +V+  L+ A + HG N+E  E+
Sbjct: 267 GTALVTMCVRCGDVDSAKQAFKGTA-DRDVVVYNALIAALAQHGHNVEAFEQ 317


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/598 (34%), Positives = 337/598 (56%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F      +VVSWN +++GYA  G  Q+  +LF  M+    +  KF+  ++L   ++
Sbjct: 82  ARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSS 141

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G+ +H   +  G A D  +  +L+ MY+KCG   +A +VF  +   D V+W  +
Sbjct: 142 PAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTL 201

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
                + G  +E+ K ++ M +  V+P++    +++ A         G+ IHA I +  +
Sbjct: 202 TGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEY 261

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            SD  V  AL  MYM+ G       VFE ++++D ++WN +   F D    ++    F++
Sbjct: 262 HSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHR 321

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           ML +G  P+  T+  +L AC+    +  GK++HA   K  L  +   G +L++MY K+G 
Sbjct: 322 MLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGS 381

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++DA   FD +  +D+ ++T ++  YA   +   +   F++M  +G+K+N+ T    L  
Sbjct: 382 MKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKA 441

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           CS    L  G+ +H+  VK G L D+ V+ AL++MY KCGS++DA  VF+G ++RD  +W
Sbjct: 442 CSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTW 501

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +IGG  ++G G +AL+ + +M  EG  P+  TFV VLSAC    L+EEG++ F+ + K
Sbjct: 502 NTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSK 561

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            YGI PT KH+ACM+DIL RAG   E E+ I    L P+A +W  LL AC  H N+E+ E
Sbjct: 562 DYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGE 621

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           + AE  L+LEP+    YV  S I A  G W D + +R  +  +G+KKEP  SWIE+ G
Sbjct: 622 RAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAG 679



 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 131/417 (31%), Positives = 229/417 (54%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +  G+ VH   +R G   + +++ +L+ +Y+ CG  + A ++F +  +  VV+W  +I+ 
Sbjct: 44  LAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISG 103

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
              +G  QEA  +F LM++  ++P++F   S++ A +       G  IH  + + G  +D
Sbjct: 104 YAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLAND 163

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
           T VGNAL+SMY + G V    RVF+A+A +D VSW  L   + +    ++ L+ ++ ML 
Sbjct: 164 TTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQ 223

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           +  +P+  T++ +L AC SL+ +  GKQ+HAH ++     +  V T+L  MY K G  +D
Sbjct: 224 ERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKD 283

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A   F+ L+ +D+ A+  +I  +  +G+ E A   F +M  EG+  +  T  + L+ C+ 
Sbjct: 284 AREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACAR 343

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
              LA G+ +H+ A K G + D+    AL+ MY+K GS+ DA  VF     RD  SW  +
Sbjct: 344 PGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTL 403

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           +G Y       ++   F+ ML +G   ++IT++ VL ACS+   ++ GK+  + + K
Sbjct: 404 LGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVK 460



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 114/396 (28%), Positives = 207/396 (52%), Gaps = 4/396 (1%)

Query: 137 AKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSM 196
           A +   +     + + +    L+++  +  D   G+ +H  I + G + +  + N L+ +
Sbjct: 13  ADVLQYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKL 72

Query: 197 YMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTF 256
           Y   G V+   ++F+  +++  VSWN + S +       +   +F  M  +  +P+  TF
Sbjct: 73  YAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTF 132

Query: 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
           + IL ACSS + + +G+++H   ++  L  +  VG +L+ MY K G + DA   FD++A+
Sbjct: 133 VSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMAS 192

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL 376
           +D  ++T +  +YA++G  E +LK +  M  E ++ +  T  + L+ C  +A L  G+ +
Sbjct: 193 RDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQI 252

Query: 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
           H+  V++ +  D+ VSTAL  MY KCG+  DA  VF+  + RD  +WN MI G+V  G  
Sbjct: 253 HAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQL 312

Query: 437 EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFA 495
           E+A   F  ML+EG  PD  T+  VLSAC+  G +  GK+ H  + K   G+   ++   
Sbjct: 313 EEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKD--GLVSDVRFGN 370

Query: 496 CMIDILGRAGKFTEIENFITETKLTPNALVWENLLG 531
            +I++  +AG   +    + +     + + W  LLG
Sbjct: 371 ALINMYSKAGSMKDARQ-VFDRMPKRDVVSWTTLLG 405



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 90/164 (54%), Gaps = 6/164 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK---KFSKFSLSTV 57
           M+ A++VF  MP+ +VVSW  LL  YA   D  +V+  F + K M +   K +K +   V
Sbjct: 382 MKDARQVFDRMPKRDVVSWTTLLGRYA---DCDQVVESFTTFKQMLQQGVKANKITYMCV 438

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
           LK  +N   +K G+ +HA  ++ G   D  ++ +L+ MY KCG  ++A++VF  +   DV
Sbjct: 439 LKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDV 498

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRA 161
           V W  +I  L Q G   EA + + +M+   ++PN     +++ A
Sbjct: 499 VTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSA 542


>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 710

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 231/598 (38%), Positives = 335/598 (56%), Gaps = 2/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGD--GQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           AK VF+S+   +VVSWN L+NGY++ G      VM LF  M+      +  + S V    
Sbjct: 64  AKLVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAA 123

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           ++S     G   HA+AI+     D F+  SL++MY K G   +A KVF  I + + V+W 
Sbjct: 124 SSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWA 183

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            II+    +    EA ++F LMR      ++F+ TS++ A T       G+ IH +  K 
Sbjct: 184 TIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKN 243

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G  S   VGNALV+MY + G +    + FE    +D ++W+A+ + +       + L +F
Sbjct: 244 GLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLF 303

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
           Y M L G KP+  TF+ ++ ACS +  +  GKQ+H +++K   +      T+LVDMY K 
Sbjct: 304 YNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKC 363

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G L DA   FD L   D+  +T++I+ YAQ GE E AL  + +M++E I  +E T+AS L
Sbjct: 364 GSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQMERIMPHELTMASVL 423

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
             CS +A L  G+ +H+  +K G  L++ + +AL  MYAKCGS++D   VF+    RD  
Sbjct: 424 RACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIM 483

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           +WN MI G  ++G G KALE F  +      PD +TFV VLSACSHMGL+E GK +F  +
Sbjct: 484 TWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSACSHMGLVERGKVYFRMM 543

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
              +GI P ++H+ACM+DIL RAGK  E + FI    +     +W  LLGAC  + N EL
Sbjct: 544 LDEFGIVPRVEHYACMVDILSRAGKLHETKEFIESATIDHGMCLWRILLGACRNYRNYEL 603

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
                EKL+EL  +  S Y+  S I    GR +D   VR L+  +G+ KEP CSWIE+
Sbjct: 604 GAYAGEKLMELGSQESSAYILLSSIYTALGRSDDVERVRRLMKLRGVNKEPGCSWIEL 661



 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 148/474 (31%), Positives = 239/474 (50%), Gaps = 6/474 (1%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           ++ G+ +HA  +R G     +L+ SLV++Y+KCG    A  VF  I + DVV+W  +I  
Sbjct: 26  LQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESITNKDVVSWNCLING 85

Query: 127 LDQQGCCQEA--AKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
             Q+G    +   ++F  MR  +  PN    + +  A + + +   G   HA+  K    
Sbjct: 86  YSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTSNF 145

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
            D  VG++L++MY + G +    +VF+ I  +++VSW  + S +       +   +F  M
Sbjct: 146 YDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLM 205

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
             +    +   +  +L A +    V +GKQ+H   +K+ L     VG +LV MY K GCL
Sbjct: 206 RREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCL 265

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
           +DA   F+   +KD   ++A+IT YAQAG++  AL  F  M L G K +EFT    +N C
Sbjct: 266 DDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINAC 325

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
           S +  L  G+ +H  ++K G+   ++  TALV MYAKCGS+ DA   F      D   W 
Sbjct: 326 SDIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWT 385

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKK 483
            MI GY ++G  E AL  +  M  E  +P E+T   VL ACS +  +E+GK+ H  +IK 
Sbjct: 386 SMISGYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIK- 444

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
            YG +  +   + +  +  + G   E  N +     + + + W  ++   S +G
Sbjct: 445 -YGFSLEVPIGSALSTMYAKCGSL-EDGNLVFRRMPSRDIMTWNAMISGLSQNG 496



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 129/423 (30%), Positives = 209/423 (49%), Gaps = 13/423 (3%)

Query: 148 VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGS 207
           + P       L+   T   D + G++IHA + + G  S   + N+LV++Y + G +    
Sbjct: 6   LPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAK 65

Query: 208 RVFEAIAHQDSVSWNALFSRFQDYESPDQG--LRIFYQMLLKGFKPNMCTFIVILKACSS 265
            VFE+I ++D VSWN L + +    +      + +F +M  +   PN  TF  +  A SS
Sbjct: 66  LVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASS 125

Query: 266 LSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
             +   G Q HA  IK S   +  VG+SL++MY K GC+ DA   FD++  ++  ++  I
Sbjct: 126 SPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATI 185

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH 385
           I+ YA    A  A + F  MR E    ++F   S L+  +    +  G+ +H +A+K G 
Sbjct: 186 ISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGL 245

Query: 386 LLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRM 445
           L    V  ALV MY KCG +DDA   F+ S  +D  +W+ MI GY + G   +AL  F  
Sbjct: 246 LSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYN 305

Query: 446 MLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRA 504
           M   G  P E TFV V++ACS +G +EEGK+ H  S+K   G    I     ++D+  + 
Sbjct: 306 MHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKA--GYECQIYFMTALVDMYAKC 363

Query: 505 GKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564
           G   +        K  P+ ++W +++   + +G       + E  L L  +M+   + P 
Sbjct: 364 GSLVDARKGFDYLK-EPDIVLWTSMISGYAQNG-------ENETALTLYCRMQMERIMPH 415

Query: 565 DIS 567
           +++
Sbjct: 416 ELT 418



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 6/97 (6%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E    VF+ MP  ++++WNA+++G +++G+G K + LF  ++    K    +   VL  
Sbjct: 467 LEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSA 526

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYS 97
            ++ G ++ G+V   M       LD+F     V+ Y+
Sbjct: 527 CSHMGLVERGKVYFRM------MLDEFGIVPRVEHYA 557


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/596 (37%), Positives = 333/596 (55%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           +KR+F  +PE NVVSWNAL + Y +     + + LF  M     K ++FSLS+++     
Sbjct: 211 SKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTG 270

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G+++H   I+LG   D F + +LVDMY+K G   +A+ VF +IK PD+V+W A+
Sbjct: 271 LRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAV 330

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I         ++A ++   M+ S + PN F L+S ++A    G +  G  +H+ + K   
Sbjct: 331 IAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDM 390

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           ESD  V   LV MY +   +      F  +  +D ++WNA+ S +  Y    + L +F +
Sbjct: 391 ESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVE 450

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +G   N  T   ILK+ + L  V   +Q+H  ++K     +  V  SL+D Y K   
Sbjct: 451 MHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSH 510

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +EDA   F+     DL ++T++IT+YAQ G+ E ALK F +M+   +K + F  +S LN 
Sbjct: 511 VEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNA 570

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ ++    G+ LH   +K G +LD+F   +LV MYAKCGSIDDA   F     R   SW
Sbjct: 571 CANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSW 630

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           + MIGG  +HG G +AL+ F  ML EG  P+ IT V VL AC+H GL+ E K +F S+++
Sbjct: 631 SAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEE 690

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
           ++G  P  +H+ACMID+LGRAGK  E    + +     NA VW  LLGA   H ++EL  
Sbjct: 691 LFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGR 750

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           + AE L  LEP+    +V  ++I A+ G+W + + VR L+    +KKEP  SWIEV
Sbjct: 751 RAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEV 806



 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 188/565 (33%), Positives = 303/565 (53%), Gaps = 11/565 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++     E ++VSW+AL++GYA++G G   +  F  M  +  K ++F+ S+VLK  + 
Sbjct: 110 ARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSI 169

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ G+ VH + +  G   D F++ +LV MY+KC    ++ ++F  I + +VV+W A+
Sbjct: 170 VKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNAL 229

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
            +C  Q   C EA  +F  M  S +KPN+F L+S+V A T   D   G+ IH  + K G+
Sbjct: 230 FSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGY 289

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           + D    NALV MY + G ++    VFE I   D VSWNA+ +    +E  +Q L +  Q
Sbjct: 290 DWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQ 349

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G  PN+ T    LKAC+ +     G+QLH+  +K  ++ +  V   LVDMY K   
Sbjct: 350 MKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDL 409

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           LEDA +AF+ L  KDL A+ AII+ Y+Q  E   AL  F +M  EGI  N+ TL++ L  
Sbjct: 410 LEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKS 469

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
            + +  +   R +H ++VK+G   D++V  +L+  Y KC  ++DAE +F+   + D  S+
Sbjct: 470 TAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSF 529

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
             MI  Y ++G GE+AL+ F  M D    PD      +L+AC+++   E+GK+    I K
Sbjct: 530 TSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILK 589

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV-WENLLGACSWHGNIELD 542
            YG    I     ++++  + G   +     +E  LT   +V W  ++G  + HG+    
Sbjct: 590 -YGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSE--LTERGIVSWSAMIGGLAQHGH---- 642

Query: 543 EKDAEKLLELEPKMESNYVFPSDIS 567
                + L+L  +M    V P+ I+
Sbjct: 643 ---GRQALQLFNQMLKEGVSPNHIT 664



 Score =  231 bits (589), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 146/468 (31%), Positives = 231/468 (49%), Gaps = 3/468 (0%)

Query: 50  SKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF 109
           +  S S +L     +  ++ G  +HA   + G + D  +   L+++YSKC     A K+ 
Sbjct: 55  TSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLV 114

Query: 110 YRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
               +PD+V+W A+I+   Q G    A   F+ M    VK N+F  +S+++A +   D R
Sbjct: 115 DESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLR 174

Query: 170 CGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
            G+ +H V+   GFE D  V N LV MY +        R+F+ I  ++ VSWNALFS + 
Sbjct: 175 IGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYV 234

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
             +   + + +FY+M+L G KPN  +   ++ AC+ L D   GK +H + IK   D +  
Sbjct: 235 QIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPF 294

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
              +LVDMY K G L DA   F+ +   D+ ++ A+I         E AL+   +M+  G
Sbjct: 295 SANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSG 354

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           I  N FTL+S L  C+ +     GR LHS  +K     D+FVS  LV MY+KC  ++DA 
Sbjct: 355 ICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDAR 414

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
             F     +D  +WN +I GY ++    +AL  F  M  EG   ++ T   +L + + + 
Sbjct: 415 MAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQ 474

Query: 470 LIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE 516
           ++   ++ H  S+K   G    I     +ID  G+     + E    E
Sbjct: 475 VVHVCRQVHGLSVKS--GFHSDIYVVNSLIDSYGKCSHVEDAERIFEE 520



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 117/350 (33%), Positives = 178/350 (50%)

Query: 135 EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALV 194
           +   I NL+ + +  P     + L+     T   R G  IHA I K G   D  + N L+
Sbjct: 39  QTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLI 98

Query: 195 SMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMC 254
           ++Y +     Y  ++ +  +  D VSW+AL S +         L  F++M L G K N  
Sbjct: 99  NLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEF 158

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
           TF  +LKACS + D+  GKQ+H   +    +G+  V  +LV MY K     D+   FD +
Sbjct: 159 TFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEI 218

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
             +++ ++ A+ + Y Q      A+  F +M L GIK NEF+L+S +N C+ +   + G+
Sbjct: 219 PERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGK 278

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
           ++H   +K G+  D F + ALV MYAK G + DA +VF+     D  SWN +I G V H 
Sbjct: 279 IIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHE 338

Query: 435 LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
             E+ALE    M   G  P+  T    L AC+ MGL E G++  SS+ K+
Sbjct: 339 HHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKM 388



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 147/264 (55%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+  F  +PE ++++WNA+++GY++  +  + + LF  M      F++ +LST+LK 
Sbjct: 410 LEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKS 469

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    +   + VH ++++ G   D ++  SL+D Y KC   ++A ++F      D+V++
Sbjct: 470 TAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSF 529

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++IT   Q G  +EA K+F  M++  +KP++FV +SL+ A         G+ +H  I K
Sbjct: 530 TSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILK 589

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           YGF  D   GN+LV+MY + G +    R F  +  +  VSW+A+      +    Q L++
Sbjct: 590 YGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQL 649

Query: 241 FYQMLLKGFKPNMCTFIVILKACS 264
           F QML +G  PN  T + +L AC+
Sbjct: 650 FNQMLKEGVSPNHITLVSVLGACN 673



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 96/166 (57%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+R+F+     ++VS+ +++  YA+ G G++ + LF  M+DME K  +F  S++L  
Sbjct: 511 VEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNA 570

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            AN    + G+ +H   ++ G  LD F   SLV+MY+KCG  D+A + F  + +  +V+W
Sbjct: 571 CANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSW 630

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
            A+I  L Q G  ++A ++FN M +  V PN   L S++ A    G
Sbjct: 631 SAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAG 676


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/598 (35%), Positives = 338/598 (56%), Gaps = 1/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A +VF ++P  ++++W +++ G A     ++  +LF  M++   +  K +  ++LK   +
Sbjct: 259 ALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNH 318

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ G+ VHA    +G   + ++  +L+ MY+KCG  ++AL+VF  +K  +VV+W A+
Sbjct: 319 PEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAM 378

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q G  +EA   FN M ES ++PN+    S++ A +     + G  IH  I K G+
Sbjct: 379 IAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGY 438

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            +D  V  AL+SMY + G +     VFE I+ Q+ V+WNA+ + +  +E  D  +  F  
Sbjct: 439 ITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQA 498

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           +L +G KP+  TF  IL  C S   +  GK + +  I+   + +  +  +LV M+   G 
Sbjct: 499 LLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGD 558

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L  A   F+ +  +DL ++  II  + Q GE + A   F+ M+  G+K ++ T    LN 
Sbjct: 559 LMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNA 618

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+    L  GR LH++  +     D+ V T L++MY KCGSIDDA  VF     ++  SW
Sbjct: 619 CASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSW 678

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
             MI GY +HG G++ALE F  M  EG  PD ITFV  LSAC+H GLI+EG  HF S+K 
Sbjct: 679 TSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMKD 738

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            + I P ++H+ CM+D+ GRAG   E   FI + ++ P++ +W  LLGAC  H ++EL E
Sbjct: 739 -FNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAE 797

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           K A+K LEL+P  +  YV  S+I A  G W + + +R ++  +G+ K+P  SWIEVDG
Sbjct: 798 KVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDG 855



 Score =  285 bits (729), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 170/588 (28%), Positives = 297/588 (50%), Gaps = 17/588 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AK++F  MP+ +V SWN LL GY +    ++   L   M     K  K++   +L   A+
Sbjct: 158 AKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACAD 217

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +  +  G  + ++ +  G   D F+  +L++M+ KCG  D+ALKVF  +   D++ W ++
Sbjct: 218 AKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSM 277

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           IT L +    ++A  +F +M E  V+P++    SL++A         G+ +HA + + G 
Sbjct: 278 ITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGL 337

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           +++  VG AL+SMY + G +     VF  +  ++ VSW A+ + F  +   ++    F +
Sbjct: 338 DTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNK 397

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M+  G +PN  TF+ IL ACS  S +  G+Q+H   IK     +  V T+L+ MY K G 
Sbjct: 398 MIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGS 457

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L DA   F+ ++ +++ A+ A+IT+Y Q  + + A+  F+ +  EGIK +  T  S LN 
Sbjct: 458 LMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNV 517

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C     L  G+ + S+ ++ G   D+ +  ALV+M+  CG +  A  +F     RD  SW
Sbjct: 518 CKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSW 577

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I G+V+HG  + A + F+MM + G  PD+ITF  +L+AC+    + EG++  + I +
Sbjct: 578 NTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITE 637

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
              +   +     +I +  + G   +  + +       N   W +++   + HG      
Sbjct: 638 A-ALDCDVVVGTGLISMYTKCGSIDD-AHLVFHNLPKKNVYSWTSMITGYAQHGR----- 690

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
              ++ LEL  +M+   V P         W  F G  +  +  G+ KE
Sbjct: 691 --GKEALELFCQMQQEGVKPD--------WITFVGALSACAHAGLIKE 728



 Score =  249 bits (635), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 139/461 (30%), Positives = 241/461 (52%)

Query: 15  NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVH 74
           N    NA LN  +++G   + M +  S+     +  + + S++L+       +  G+ +H
Sbjct: 68  NTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIH 127

Query: 75  AMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQ 134
                     D F+   L+ MY+KCG  ++A ++F  + D DV +W  ++    Q    +
Sbjct: 128 NHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYE 187

Query: 135 EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALV 194
           EA ++   M +  VKP+++    ++ A  +  +   G  + ++I   G+++D  VG AL+
Sbjct: 188 EAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALI 247

Query: 195 SMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMC 254
           +M+++ G V    +VF  +  +D ++W ++ +    +    Q   +F  M  +G +P+  
Sbjct: 248 NMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKV 307

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
            F+ +LKAC+    +  GK++HA   +  LD    VGT+L+ MY K G +EDA   F+ +
Sbjct: 308 AFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLV 367

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
             +++ ++TA+I  +AQ G  E A   F KM   GI+ N  T  S L  CS  + L  GR
Sbjct: 368 KGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGR 427

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
            +H   +K G++ D  V TAL++MYAKCGS+ DA  VF+  + ++  +WN MI  YV+H 
Sbjct: 428 QIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHE 487

Query: 435 LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
             + A+  F+ +L EG  PD  TF  +L+ C     +E GK
Sbjct: 488 KYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGK 528



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 140/468 (29%), Positives = 237/468 (50%), Gaps = 11/468 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A  VF  +   NVVSW A++ G+A+ G  ++    F  M +   + ++ +  ++L  
Sbjct: 357 MEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGA 416

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    +K G+ +H   I+ G   D  +  +L+ MY+KCG   +A  VF RI   +VVAW
Sbjct: 417 CSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAW 476

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+IT   Q      A   F  + +  +KP+    TS++           G+ + ++I +
Sbjct: 477 NAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIR 536

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GFESD  + NALVSM++  G +     +F  +  +D VSWN + + F  +         
Sbjct: 537 AGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDY 596

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  M   G KP+  TF  +L AC+S   +  G++LHA   + +LD + VVGT L+ MY K
Sbjct: 597 FKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTK 656

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G ++DA + F +L  K+++++T++IT YAQ G  + AL+ F +M+ EG+K +  T    
Sbjct: 657 CGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGA 716

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHL-LDMFVSTALVAMYAKCGSIDDA-EAVFKGSALR 418
           L+ C+    +  G L H  ++K  ++   M     +V ++ + G + +A E + K     
Sbjct: 717 LSACAHAGLIKEG-LHHFESMKDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKP 775

Query: 419 DTASWNMMIGGYVKH---GLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           D+  W  ++G    H    L EK  +  ++ LD    P++    V+LS
Sbjct: 776 DSRLWGALLGACQVHLDVELAEKVAQK-KLELD----PNDDGVYVILS 818



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 115/416 (27%), Positives = 211/416 (50%), Gaps = 4/416 (0%)

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           A +  L + G   EA  +   +    ++ ++   +SL++   +  +   GE IH  I   
Sbjct: 74  AFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFS 133

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
             + D  + N L+SMY + G  +   ++F+ +  +D  SWN L   +  +   ++  R+ 
Sbjct: 134 KIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLH 193

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            QM+  G KP+  TF+ +L AC+   +V  G +L +  +    D +  VGT+L++M+ K 
Sbjct: 194 EQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKC 253

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G ++DA   F++L  +DL  +T++IT  A+  + + A   F+ M  EG++ ++    S L
Sbjct: 254 GGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLL 313

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
             C+    L  G+ +H+   + G   +++V TAL++MY KCGS++DA  VF     R+  
Sbjct: 314 KACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVV 373

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSS 480
           SW  MI G+ +HG  E+A   F  M++ G  P+ +TF+ +L ACS    +++G++ H   
Sbjct: 374 SWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRI 433

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
           IK  Y     ++    ++ +  + G   +  N + E     N + W  ++ A   H
Sbjct: 434 IKAGYITDDRVR--TALLSMYAKCGSLMDARN-VFERISKQNVVAWNAMITAYVQH 486


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/611 (37%), Positives = 344/611 (56%), Gaps = 11/611 (1%)

Query: 1    MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
            M+ AK +FK M + N V+ N L+ G A    G++   +F  MKD+ +  S+ SL  +L  
Sbjct: 402  MDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINSE-SLVVLLST 460

Query: 61   FANSGYIK----AGQVVHAMAIRLGCALDKF-LSCSLVDMYSKCGLADNALKVFYRIKDP 115
            F     +K     GQ VHA   R G    +  +  +LV+MY KC   DNA  VF  +   
Sbjct: 461  FTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSK 520

Query: 116  DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH 175
            D V+W ++I+ LD     +EA   F+ M+ + + P+ F + S + + +  G    G  IH
Sbjct: 521  DTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIH 580

Query: 176  AVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE-SP 234
                K+G + D  V NAL+++Y E   ++   +VF  +   D VSWN+       YE S 
Sbjct: 581  GEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASV 640

Query: 235  DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
             Q L+ F +M+  G++PN  TFI IL A SS S +G G Q+HA  +K+S+  ++ +  +L
Sbjct: 641  LQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIENAL 700

Query: 295  VDMYDKSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
            +  Y K   +ED  + F  ++  +D  ++ ++I+ Y  +G    A+     M   G K +
Sbjct: 701  LAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLD 760

Query: 354  EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
             FT A+ L+ C+ VATL  G  +H+ AV+     D+ V +ALV MYAKCG ID A   F+
Sbjct: 761  GFTFATVLSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFE 820

Query: 414  GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
               +R+  SWN MI GY +HG G+KAL+ F  M   G  PD +TFV VLSACSH+GL++E
Sbjct: 821  LMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDE 880

Query: 474  GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
            G KHF S+ ++YG++P I+HF+CM+D+LGRAG   +IE+FI    + PN L+W  +LGAC
Sbjct: 881  GYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIWRTVLGAC 940

Query: 534  SWHG--NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
                  N EL ++ A+ L+ELEP+   NYV  S++ A  G W D    R  +    +KK+
Sbjct: 941  CRANGRNTELGQRAAKMLIELEPQNAVNYVLLSNMHAAGGNWEDVVEARLAMRKAAVKKD 1000

Query: 592  PSCSWIEV-DG 601
              CSW+ + DG
Sbjct: 1001 AGCSWVNMKDG 1011



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 151/544 (27%), Positives = 270/544 (49%), Gaps = 21/544 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F  MP+ N+VSW+ L++GY ++    +   LF  +       + F++ + L+    
Sbjct: 194 ARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQ 253

Query: 64  SGY--IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKC-GLADNALKVFYRIKDPDVVAW 120
            G   IK G  +HA   +L C  D  LS  L+ MYS C G  D+A +VF  IK  + V W
Sbjct: 254 CGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTW 313

Query: 121 GAIITCLDQQGCCQEAAKIFNLMR----ESSVKPNQFVLTSLVRATTETGDQRCG----E 172
            +II+   ++G    A K+F++M+    E +++PN++ L SLV A     D  CG    E
Sbjct: 314 NSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLAD--CGLVLLE 371

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
            +   I K GF  D  VG+ALV+ +   G +     +F+ +  +++V+ N L        
Sbjct: 372 QMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQH 431

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGK----QLHAHTIKHSL-DGN 287
             ++  ++F +M     + N  + +V+L   +  S++  GK    ++HA+  +  L D  
Sbjct: 432 QGEEAAKVFKEM-KDLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDAR 490

Query: 288 HVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL 347
             +G +LV+MY K   +++A   F  + +KD  ++ ++I+        E A+ CF  M+ 
Sbjct: 491 ISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKR 550

Query: 348 EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
            G+  + F++ S L+ CS +  L  GR +H    K G  LD+ VS AL+ +YA+  SI++
Sbjct: 551 NGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINE 610

Query: 408 AEAVFKGSALRDTASWNMMIGGYVKHGLGE-KALEAFRMMLDEGYVPDEITFVVVLSACS 466
            + VF      D  SWN  IG   K+     +AL+ F  M+  G+ P+ +TF+ +L+A S
Sbjct: 611 CQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVS 670

Query: 467 HMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVW 526
              ++  G +  + I K Y +         ++   G+  +  + E   +      + + W
Sbjct: 671 SFSVLGLGHQIHALILK-YSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSW 729

Query: 527 ENLL 530
            +++
Sbjct: 730 NSMI 733



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 123/450 (27%), Positives = 225/450 (50%), Gaps = 26/450 (5%)

Query: 42  MKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGL 101
           ++ ++ +F ++  S+ L   AN         +H    + G   D F   +L+++Y + G 
Sbjct: 140 LQQLDSEFDRYKTSSSLYD-ANH--------LHLQLYKTGFTDDVFFCNTLINIYVRIGN 190

Query: 102 ADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRA 161
             +A K+F  +   ++V+W  +I+   Q     EA  +F  +  S + PN F + S +RA
Sbjct: 191 LVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRA 250

Query: 162 TTETGDQ--RCGESIHAVICKYGFESDTLVGNALVSMYME-NGRVSYGSRVFEAIAHQDS 218
             + G    + G  IHA ICK    SD ++ N L+SMY + +G +    RVF+ I  ++S
Sbjct: 251 CQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNS 310

Query: 219 VSWNALFSRFQDYESPDQGLRIFYQMLLKG----FKPNMCTFIVILKACSSLSDVGFG-- 272
           V+WN++ S +          ++F  M ++G     +PN  T   ++ A  SL+D G    
Sbjct: 311 VTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVLL 370

Query: 273 KQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQA 332
           +Q+     K     +  VG++LV+ + + G ++ A + F  + +++      ++   A+ 
Sbjct: 371 EQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQ 430

Query: 333 GEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRL----LHSIAVKTGHLLD 388
            + E A K F++M+ + ++ N  +L   L+  +  + L  G+     +H+   ++G L+D
Sbjct: 431 HQGEEAAKVFKEMK-DLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSG-LVD 488

Query: 389 MFVS--TALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM 446
             +S   ALV MY KC +ID+A +VF+    +DT SWN MI G   +   E+A+  F  M
Sbjct: 489 ARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTM 548

Query: 447 LDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
              G VP   + +  LS+CS +G +  G++
Sbjct: 549 KRNGMVPSNFSVISTLSSCSSLGWLTLGRQ 578



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 108/407 (26%), Positives = 195/407 (47%), Gaps = 22/407 (5%)

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           +H  + K GF  D    N L+++Y+  G +    ++F+ +  ++ VSW+ L S +     
Sbjct: 162 LHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRM 221

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVG--FGKQLHAHTIKHSLDGNHVVG 291
           PD+   +F  ++  G  PN       L+AC      G   G Q+HA   K     + ++ 
Sbjct: 222 PDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILS 281

Query: 292 TSLVDMY-DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
             L+ MY D SG ++DA   FD +  ++   + +II+ Y + G+A  A K F  M++EG+
Sbjct: 282 NVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGV 341

Query: 351 ----KSNEFTLASCLNGCSPVAT---LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403
               + NE+TL S +     +A    +   ++L  I  K+G L D++V +ALV  +A+ G
Sbjct: 342 ELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIE-KSGFLRDLYVGSALVNGFARYG 400

Query: 404 SIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
            +D A+ +FK    R+  + N ++ G  +   GE+A + F+ M D   +  E + VV+LS
Sbjct: 401 LMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINSE-SLVVLLS 459

Query: 464 ACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMID-ILGRAGKFTEIENFITETKLTPN 522
             +    ++EGK+    +      +  +     + + ++   GK T I+N  +  +L P+
Sbjct: 460 TFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPS 519

Query: 523 ALVWENLLGACSWHGNIE-LDEKDA-EKLLELEPKMESNYVFPSDIS 567
                      SW+  I  LD  +  E+ +     M+ N + PS+ S
Sbjct: 520 K-------DTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFS 559



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 74/165 (44%), Gaps = 3/165 (1%)

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
           ++L +   LH    KTG   D+F    L+ +Y + G++  A  +F     ++  SW+ +I
Sbjct: 154 SSLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLI 213

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL--IEEGKKHFSSIKKIY 485
            GY ++ + ++A   F+ ++  G +P+       L AC   G   I+ G +  + I K+ 
Sbjct: 214 SGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLP 273

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
            ++  I     M      +G   +      E K   N++ W +++
Sbjct: 274 CVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFR-NSVTWNSII 317


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/596 (36%), Positives = 335/596 (56%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           ++R+F  + E NVVSWNAL + Y +S    + + LF  M       ++FS+S +L   A 
Sbjct: 136 SRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAG 195

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G+ +H + +++G  LD+F + +LVDMYSK G  + A+ VF  I  PDVV+W AI
Sbjct: 196 LQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAI 255

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I       C   A  + + M+ S  +PN F L+S ++A    G +  G  +H+ + K   
Sbjct: 256 IAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDA 315

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            SD      LV MY +   +    R ++++  +D ++WNAL S +         + +F +
Sbjct: 316 HSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSK 375

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +    N  T   +LK+ +SL  +   KQ+H  +IK  +  +  V  SL+D Y K   
Sbjct: 376 MFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNH 435

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +++A   F+    +DL AYT++IT+Y+Q G+ E ALK + +M+   IK + F  +S LN 
Sbjct: 436 IDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNA 495

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ ++    G+ LH  A+K G + D+F S +LV MYAKCGSI+DA+  F     R   SW
Sbjct: 496 CANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSW 555

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           + MIGGY +HG G++AL  F  ML +G  P+ IT V VL AC+H GL+ EGK++F  ++ 
Sbjct: 556 SAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEV 615

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
           ++GI PT +H+ACMID+LGR+GK  E    +       +  VW  LLGA   H NIEL +
Sbjct: 616 MFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQ 675

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           K A+ L +LEP+    +V  ++I A+ G W + + VR  +    +KKEP  SWIE+
Sbjct: 676 KAAKMLFDLEPEKSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEI 731



 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 177/567 (31%), Positives = 303/567 (53%), Gaps = 15/567 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++     EL+VVSW++LL+GY ++G  ++ + +F  M  +  K ++F+  +VLK  + 
Sbjct: 35  ARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSM 94

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G+ VH MA+  G   D F++ +LV MY+KCGL D++ ++F  I + +VV+W A+
Sbjct: 95  KRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNAL 154

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
            +C  Q   C EA  +F  M  S + PN+F ++ ++ A     +   G  IH ++ K G 
Sbjct: 155 FSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGL 214

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           + D    NALV MY + G +     VF+ IAH D VSWNA+ +    ++  D  L +  +
Sbjct: 215 DLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDE 274

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G +PNM T    LKAC+++     G+QLH+  IK     +      LVDMY K   
Sbjct: 275 MKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEM 334

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++DA  A+DS+  KD+ A+ A+I+ Y+Q G+   A+  F KM  E I  N+ TL++ L  
Sbjct: 335 MDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKS 394

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
            + +  +   + +H+I++K+G   D +V  +L+  Y KC  ID+A  +F+     D  ++
Sbjct: 395 VASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAY 454

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK 482
             MI  Y ++G GE+AL+ +  M D    PD      +L+AC+++   E+GK+ H  +IK
Sbjct: 455 TSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIK 514

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNA--LVWENLLGACSWHGNIE 540
             +G    I     ++++  + G   + +   +E    PN   + W  ++G  + HG+  
Sbjct: 515 --FGFMCDIFASNSLVNMYAKCGSIEDADRAFSE---IPNRGIVSWSAMIGGYAQHGH-- 567

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDIS 567
                 ++ L L  +M  + V P+ I+
Sbjct: 568 -----GKEALRLFNQMLRDGVPPNHIT 589



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 152/492 (30%), Positives = 242/492 (49%), Gaps = 11/492 (2%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           +HA  I+ G + D  L   LV +YSKC     A K+     + DVV+W ++++   Q G 
Sbjct: 3   LHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGF 62

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
            +EA  +FN M    VK N+F   S+++A +   D   G  +H +    GFESD  V N 
Sbjct: 63  VEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANT 122

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           LV MY + G +    R+F  I  ++ VSWNALFS +   E   + + +F +M+  G  PN
Sbjct: 123 LVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPN 182

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
             +  +IL AC+ L +   G+++H   +K  LD +     +LVDMY K+G +E A   F 
Sbjct: 183 EFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQ 242

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
            +A+ D+ ++ AII         ++AL    +M+  G + N FTL+S L  C+ +     
Sbjct: 243 DIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKEL 302

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
           GR LHS  +K     D+F +  LV MY+KC  +DDA   +     +D  +WN +I GY +
Sbjct: 303 GRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQ 362

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTI 491
            G    A+  F  M  E    ++ T   VL + + +  I+  K+ H  SIK   GI    
Sbjct: 363 CGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKS--GIYSDF 420

Query: 492 KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551
                ++D  G+     E    I E +   + + + +++ A S +G       D E+ L+
Sbjct: 421 YVINSLLDTYGKCNHIDEASK-IFEERTWEDLVAYTSMITAYSQYG-------DGEEALK 472

Query: 552 LEPKMESNYVFP 563
           L  +M+   + P
Sbjct: 473 LYLQMQDADIKP 484



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 126/450 (28%), Positives = 221/450 (49%), Gaps = 2/450 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  VF+ +   +VVSWNA++ G          + L   MK    + + F+LS+ LK 
Sbjct: 234 IEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKA 293

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A  G+ + G+ +H+  I++    D F +  LVDMYSKC + D+A + +  +   D++AW
Sbjct: 294 CAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAW 353

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I+   Q G   +A  +F+ M    +  NQ  L++++++       +  + IH +  K
Sbjct: 354 NALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIK 413

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G  SD  V N+L+  Y +   +   S++FE    +D V++ ++ + +  Y   ++ L++
Sbjct: 414 SGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKL 473

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           + QM     KP+      +L AC++LS    GKQLH H IK     +     SLV+MY K
Sbjct: 474 YLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAK 533

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +EDA  AF  + N+ + +++A+I  YAQ G  + AL+ F +M  +G+  N  TL S 
Sbjct: 534 CGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSV 593

Query: 361 LNGCSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR- 418
           L  C+    +  G+     + V  G          ++ +  + G +++A  +        
Sbjct: 594 LCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEA 653

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
           D   W  ++G    H   E   +A +M+ D
Sbjct: 654 DGFVWGALLGAARIHKNIELGQKAAKMLFD 683



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/265 (32%), Positives = 136/265 (51%), Gaps = 6/265 (2%)

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
           +LHAH IK     +  +   LV +Y K      A    D  +  D+ +++++++ Y Q G
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST 393
             E AL  F +M L G+K NEFT  S L  CS    L  GR +H +AV TG   D FV+ 
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVAN 121

Query: 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP 453
            LV MYAKCG +DD+  +F G   R+  SWN +   YV+  L  +A+  F+ M+  G +P
Sbjct: 122 TLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMP 181

Query: 454 DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENF 513
           +E +  ++L+AC+ +   + G+K    + K+ G+         ++D+  +AG   EIE  
Sbjct: 182 NEFSISIILNACAGLQEGDLGRKIHGLMLKM-GLDLDQFSANALVDMYSKAG---EIEGA 237

Query: 514 IT--ETKLTPNALVWENLLGACSWH 536
           +   +    P+ + W  ++  C  H
Sbjct: 238 VAVFQDIAHPDVVSWNAIIAGCVLH 262


>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/598 (37%), Positives = 333/598 (55%), Gaps = 2/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGD--GQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           AK VF  +   +V+SWN L+NGY++ G      VM LF  M+      +  + S +    
Sbjct: 62  AKLVFDRIHNKDVISWNCLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAA 121

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           +N   I  GQ  HA+AI++ C  D F+  SL++MY K GL   A +VF R+ + + V W 
Sbjct: 122 SNLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWA 181

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            +I+    Q    EA ++F LMR      N+F  TS++ A         G+ IH +  K 
Sbjct: 182 TMISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKT 241

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G      + NALV+MY + G +    +VFE    ++S++W+A+ + +       + L++F
Sbjct: 242 GLLVFLSILNALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLF 301

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M   G  P+  T + +L ACS    V  GKQ+H + +K   +    + T+LVDMY KS
Sbjct: 302 SRMHFAGINPSEFTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKS 361

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G  EDA   F+ L   DL  +T++I  Y Q GE E AL  + +M++EGI  NE T+AS L
Sbjct: 362 GVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVL 421

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
             CS +A    GR +H+  +K G  L++ + +AL  MYAKCG++++   VF+    RD  
Sbjct: 422 KACSNLAAFDQGRQIHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPERDII 481

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SWN MI G  ++G G++ALE F  M  +   PD++TFV VLSACSHMGL++ G  +F  +
Sbjct: 482 SWNAMISGLSQNGYGKEALELFEEMRQQDTKPDDVTFVNVLSACSHMGLVDSGWLYFRMM 541

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
              +G+ P ++H+ACM+D+L RAGK  E + FI  T +     +W  LLGAC  + N EL
Sbjct: 542 FDEFGLLPKVEHYACMVDVLSRAGKLYEAKEFIESTTIDHGLCLWRILLGACRNYRNYEL 601

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
                EKL+EL  +  S YV  S I    GR  D   VR+++  +G+ KEP CSWIE+
Sbjct: 602 GAYAGEKLMELGSQESSAYVLLSGIYTALGRPEDVERVRSMMKVRGVSKEPGCSWIEL 659



 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 150/514 (29%), Positives = 248/514 (48%), Gaps = 14/514 (2%)

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCALD-KFLSCSLVDMYSKCGLADNALKVFYRIKDPD 116
           L  F +   ++ G+ +HA  I+L  +    +L+ SL++ Y+KC     A  VF RI + D
Sbjct: 14  LVQFTHQKSLQKGRALHAQIIKLASSSSCIYLANSLINFYAKCCHLPKAKLVFDRIHNKD 73

Query: 117 VVAWGAIITCLDQQGCCQEA--AKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
           V++W  +I    QQG    +   ++F  MR  ++ PN    + +  A +       G+  
Sbjct: 74  VISWNCLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAASNLSSIFFGQQA 133

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           HAV  K     D  VG++L++MY + G +     VF+ +  ++ V+W  + S +      
Sbjct: 134 HAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLA 193

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
            +   +F  M  +    N   F  +L A +    V  GKQ+H   +K  L     +  +L
Sbjct: 194 GEAFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNAL 253

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           V MY K G L+D+   F+   +K+   ++A+IT YAQ+G++  ALK F +M   GI  +E
Sbjct: 254 VTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSE 313

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
           FTL   LN CS    +  G+ +H+  +K G    +++ TALV MYAK G  +DA   F  
Sbjct: 314 FTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNY 373

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
               D   W  MI GYV++G  E AL  +  M  EG +P+E+T   VL ACS++   ++G
Sbjct: 374 LQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQG 433

Query: 475 KK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           ++ H  +IK   G+  TI   + +  +  + G   E  N +       + + W  ++   
Sbjct: 434 RQIHARTIKYGLGLEVTIG--SALSTMYAKCGNLEE-GNIVFRRMPERDIISWNAMISGL 490

Query: 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           S +G         ++ LEL  +M      P D++
Sbjct: 491 SQNGY-------GKEALELFEEMRQQDTKPDDVT 517



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 93/165 (56%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E A++ F  + + ++V W +++ GY ++G+ +  + L+C M+      ++ ++++VLK  
Sbjct: 365 EDARKGFNYLQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKAC 424

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           +N      G+ +HA  I+ G  L+  +  +L  MY+KCG  +    VF R+ + D+++W 
Sbjct: 425 SNLAAFDQGRQIHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPERDIISWN 484

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
           A+I+ L Q G  +EA ++F  MR+   KP+     +++ A +  G
Sbjct: 485 AMISGLSQNGYGKEALELFEEMRQQDTKPDDVTFVNVLSACSHMG 529



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 3/102 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E    VF+ MPE +++SWNA+++G +++G G++ + LF  M+  + K    +   VL  
Sbjct: 465 LEEGNIVFRRMPERDIISWNAMISGLSQNGYGKEALELFEEMRQQDTKPDDVTFVNVLSA 524

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKF--LSCSLVDMYSKCG 100
            ++ G + +G +   M       L K    +C +VD+ S+ G
Sbjct: 525 CSHMGLVDSGWLYFRMMFDEFGLLPKVEHYAC-MVDVLSRAG 565


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/585 (36%), Positives = 322/585 (55%)

Query: 15  NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVH 74
           N V W   + GY ++G   K + L+  M+       K    +V+K   +   ++AG+ VH
Sbjct: 84  NAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVH 143

Query: 75  AMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQ 134
              I  G   D  +  +L  MY+KCG  +NA +VF R+   DVV+W AII    Q G   
Sbjct: 144 EDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPY 203

Query: 135 EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALV 194
           EA  +F+ M+ + +KPN   L S++           G+ IH    + G ESD LV N LV
Sbjct: 204 EALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLV 263

Query: 195 SMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMC 254
           +MY + G V+   ++FE +  +D  SWNA+   +       + L  F +M ++G KPN  
Sbjct: 264 NMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSI 323

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
           T + +L AC+ L  +  G+Q+H + I+   + N VVG +LV+MY K G +  A   F+ +
Sbjct: 324 TMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERM 383

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
             K++ A+ AII+ Y+Q G    AL  F +M+ +GIK + F + S L  C+    L  G+
Sbjct: 384 PKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGK 443

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
            +H   +++G   ++ V T LV +YAKCG+++ A+ +F+    +D  SW  MI  Y  HG
Sbjct: 444 QIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHG 503

Query: 435 LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHF 494
            GE AL  F  M + G   D I F  +L+ACSH GL+++G ++F  +K  YG+ P ++H+
Sbjct: 504 HGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHY 563

Query: 495 ACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEP 554
           AC++D+LGRAG   E    I    L P+A VW  LLGAC  H NIEL E+ A+ L EL+P
Sbjct: 564 ACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDP 623

Query: 555 KMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
                YV  S+I A   RW D + +R ++  +G+KK+P CS + V
Sbjct: 624 DNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAV 668



 Score =  248 bits (632), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 149/468 (31%), Positives = 242/468 (51%), Gaps = 10/468 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A++VF  MP+ +VVSWNA++ GY+++G   + + LF  M+    K +  +L +V+  
Sbjct: 171 LENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPV 230

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+   ++ G+ +H  AIR G   D  +   LV+MY+KCG  + A K+F R+   DV +W
Sbjct: 231 CAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASW 290

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            AII          EA   FN M+   +KPN   + S++ A         G+ IH    +
Sbjct: 291 NAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIR 350

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GFES+ +VGNALV+MY + G V+   ++FE +  ++ V+WNA+ S +  +  P + L +
Sbjct: 351 SGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALAL 410

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M  +G KP+    + +L AC+    +  GKQ+H +TI+   + N VVGT LVD+Y K
Sbjct: 411 FIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAK 470

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +  A   F+ +  +D+ ++T +I +Y   G  E AL  F KM+  G K +     + 
Sbjct: 471 CGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAI 530

Query: 361 LNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
           L  CS    +  G +    +    G    +     LV +  + G +D+A  + K  +L  
Sbjct: 531 LTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEP 590

Query: 420 TAS-WNMMIGGYVKH---GLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
            A+ W  ++G    H    LGE+A +     LD    PD   + V+LS
Sbjct: 591 DANVWGALLGACRIHCNIELGEQAAKHL-FELD----PDNAGYYVLLS 633


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/595 (35%), Positives = 331/595 (55%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           VF  MPE N VS+  L++GYA+S    +   LF  +     + + F  +TVLK   +  +
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
            + G++VH   +++G   + F+  +L+D YS  G    A +VF  I   D+V+W  +I  
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIAS 121

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             +  C  EA + F+ MR +  KPN F    +++A     +   G+++H  + K  +E D
Sbjct: 122 YAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERD 181

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             VG  L+ +Y   G      R F  +   D + W+ + SRF      ++ L IF QM  
Sbjct: 182 LYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRR 241

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
               PN  TF  +L+A + +  +   K +H H +K  L  +  V  +L+  Y K GC+E 
Sbjct: 242 AFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQ 301

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           +   F++L++++  ++  II SY Q G+ E AL  F  M    +++ E T +S L  C+ 
Sbjct: 302 SMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACAT 361

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           +A L  G  +H +  KT +  D+ V  AL+ MYAKCGSI DA  +F    LRD  SWN +
Sbjct: 362 LAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAI 421

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           I GY  HGLG +A++ F +M +    PDE+TFV VLSACS+ G ++EGK++F+S+K+ YG
Sbjct: 422 ICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYG 481

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDA 546
           I P ++H+ CM+ ++GR+G   +   FI +    P+ ++W  LLGAC  H ++EL    A
Sbjct: 482 IEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISA 541

Query: 547 EKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           +++LELEP+ E+++V  S+I A   RW + + VR  +  +G+KKEP  SWIE  G
Sbjct: 542 QRVLELEPRDEASHVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQG 596



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 122/435 (28%), Positives = 212/435 (48%), Gaps = 2/435 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + +A+ VF  +   ++VSW  ++  YAE+    + +  F  M+    K + F+ + VLK 
Sbjct: 97  VSMAREVFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKA 156

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                   AG+ VH   ++     D ++   L+++Y++CG  D+A + F  +   DV+ W
Sbjct: 157 CLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPW 216

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+   Q G  ++A +IF  MR + V PNQF  +S+++A+ +       ++IH    K
Sbjct: 217 SFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALK 276

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G  +D  V NAL++ Y + G +     +FEA++ ++ VSWN +   +      ++ L +
Sbjct: 277 AGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSL 336

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  ML    +    T+  IL+AC++L+ +  G Q+H  T K     +  VG +L+DMY K
Sbjct: 337 FSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAK 396

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G ++DA   FD L  +D  ++ AII  Y+  G    A+K F  M+    K +E T    
Sbjct: 397 CGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGV 456

Query: 361 LNGCSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
           L+ CS    L  G+    S+    G    M   T +V +  + G++D A    +      
Sbjct: 457 LSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEP 516

Query: 420 TAS-WNMMIGGYVKH 433
           +   W  ++G  V H
Sbjct: 517 SVMIWRALLGACVIH 531



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 1/178 (0%)

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
           + FD +  ++  ++  +I  YAQ+ +   A + F ++  EG + N F   + L     + 
Sbjct: 1   MVFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSME 60

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
               GR++H   +K G+  + F+ TAL+  Y+  G +  A  VF   + +D  SW  MI 
Sbjct: 61  WAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIA 120

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIY 485
            Y ++    +ALE F  M   G+ P+  TF  VL AC  +   + GK  H S +K  Y
Sbjct: 121 SYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNY 178


>gi|296081839|emb|CBI20844.3| unnamed protein product [Vitis vinifera]
          Length = 700

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/599 (36%), Positives = 343/599 (57%), Gaps = 4/599 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM----KDMEKKFSKFSLSTVLK 59
           A+ +F  MPE + VSWN+++ GY++ G  ++   LFCSM    ++ +   S F+L+TVLK
Sbjct: 95  ARFLFDDMPERDDVSWNSMIAGYSQRGLNEEACGLFCSMINSCENWKLLVSDFTLATVLK 154

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
                G  + G+ VH  A+++G   D F+S S V MY KCG+ D A   F +I++ D+VA
Sbjct: 155 ACGGLGCSRIGKCVHGYAVKIGFDSDLFVSGSTVYMYCKCGILDMAGLAFDQIENKDIVA 214

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  +IT   Q    +EA ++F  M     KPN      +++A+T   D   G   HA + 
Sbjct: 215 WNTMITGYAQNCYEEEAIELFYQMELEGFKPNDTTFCCVLKASTAMSDSAVGRCFHAKVL 274

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K G   D  V  ALV MY +   +    R F  ++ ++ VS+NAL + +      ++ LR
Sbjct: 275 KLGCSMDVFVATALVDMYSKFYDIEDVERAFGEMSKRNLVSFNALITGYSLMGKYEEALR 334

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           ++ Q+  +G +P+  TF+ +  +CS  S V  G Q+H H++K  LD +  VG S+V+ Y 
Sbjct: 335 VYSQLQSEGMEPDSFTFVGLFSSCSVSSTVAEGAQVHVHSVKFGLDSDVSVGNSIVNFYS 394

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G  + A  AF+S+   +   +  II+ +AQ GE E AL  F KMR    K++EF+ +S
Sbjct: 395 KCGFTDSALEAFESINRPNSVCWAGIISGFAQNGEGEKALMQFCKMRKFIDKTDEFSSSS 454

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            +   S  A +  GR LH+  +K+G    ++V +A++ MY+KCG ++DA+ VF     ++
Sbjct: 455 VIKAVSSWAAVEQGRHLHAHVMKSGLDCTIYVGSAVIDMYSKCGMVEDAQKVFSVMPEKN 514

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SWN MI GY ++G  ++AL  F+ M   G +P  +TFV +L ACSH GL+EEG+  ++
Sbjct: 515 VVSWNSMITGYAQNGFCKEALLLFQEMTSSGILPTAVTFVGILFACSHAGLVEEGRNFYN 574

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
            +   YGI P+++H  CM+D+LGRAG   E E F+  +  +    +W +LL AC  H N 
Sbjct: 575 LMVHNYGIPPSMEHCTCMVDLLGRAGYLEEAEAFLLSSSFSKEPGIWGSLLSACGVHKNS 634

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           ++  + A+  L LEP   S+Y   S+I A++  W++ S +R L+   G++KEP CSWIE
Sbjct: 635 DVGSRAAQHCLFLEPHYSSSYTALSNIYASKELWSEVSRIRDLMKDMGVEKEPGCSWIE 693



 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 159/564 (28%), Positives = 279/564 (49%), Gaps = 19/564 (3%)

Query: 11  MPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAG 70
           M E NVV W + +   A  G   + +  F  M     + +  + S  +   A S      
Sbjct: 1   MLETNVVRWTSKITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLA 60

Query: 71  QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
             +H + ++ G +   F+S  L+ MYSK      A  +F  + + D V+W ++I    Q+
Sbjct: 61  TSLHCLILKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQR 120

Query: 131 GCCQEAAKIFNLMRES----SVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
           G  +EA  +F  M  S     +  + F L ++++A    G  R G+ +H    K GF+SD
Sbjct: 121 GLNEEACGLFCSMINSCENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFDSD 180

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             V  + V MY + G +      F+ I ++D V+WN + + +      ++ + +FYQM L
Sbjct: 181 LFVSGSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMEL 240

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           +GFKPN  TF  +LKA +++SD   G+  HA  +K     +  V T+LVDMY K   +ED
Sbjct: 241 EGFKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIED 300

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
              AF  ++ ++L ++ A+IT Y+  G+ E AL+ + +++ EG++ + FT     + CS 
Sbjct: 301 VERAFGEMSKRNLVSFNALITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSV 360

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
            +T+A G  +H  +VK G   D+ V  ++V  Y+KCG  D A   F+     ++  W  +
Sbjct: 361 SSTVAEGAQVHVHSVKFGLDSDVSVGNSIVNFYSKCGFTDSALEAFESINRPNSVCWAGI 420

Query: 427 IGGYVKHGLGEKALEAF---RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           I G+ ++G GEKAL  F   R  +D+    DE +   V+ A S    +E+G+   + + K
Sbjct: 421 ISGFAQNGEGEKALMQFCKMRKFIDK---TDEFSSSSVIKAVSSWAAVEQGRHLHAHVMK 477

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
             G+  TI   + +ID+  + G   + +  +       N + W +++   + +G  +   
Sbjct: 478 -SGLDCTIYVGSAVIDMYSKCGMVEDAQK-VFSVMPEKNVVSWNSMITGYAQNGFCK--- 532

Query: 544 KDAEKLLELEPKMESNYVFPSDIS 567
              E LL L  +M S+ + P+ ++
Sbjct: 533 ---EALL-LFQEMTSSGILPTAVT 552



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/429 (27%), Positives = 216/429 (50%), Gaps = 2/429 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +++A   F  +   ++V+WN ++ GYA++   ++ + LF  M+    K +  +   VLK 
Sbjct: 197 LDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMELEGFKPNDTTFCCVLKA 256

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                    G+  HA  ++LGC++D F++ +LVDMYSK    ++  + F  +   ++V++
Sbjct: 257 STAMSDSAVGRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIEDVERAFGEMSKRNLVSF 316

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+IT     G  +EA ++++ ++   ++P+ F    L  + + +     G  +H    K
Sbjct: 317 NALITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSVSSTVAEGAQVHVHSVK 376

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +G +SD  VGN++V+ Y + G        FE+I   +SV W  + S F      ++ L  
Sbjct: 377 FGLDSDVSVGNSIVNFYSKCGFTDSALEAFESINRPNSVCWAGIISGFAQNGEGEKALMQ 436

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M     K +  +   ++KA SS + V  G+ LHAH +K  LD    VG++++DMY K
Sbjct: 437 FCKMRKFIDKTDEFSSSSVIKAVSSWAAVEQGRHLHAHVMKSGLDCTIYVGSAVIDMYSK 496

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +EDA   F  +  K++ ++ ++IT YAQ G  + AL  F++M   GI     T    
Sbjct: 497 CGMVEDAQKVFSVMPEKNVVSWNSMITGYAQNGFCKEALLLFQEMTSSGILPTAVTFVGI 556

Query: 361 LNGCSPVATLANGRLLHSIAVKT-GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL-R 418
           L  CS    +  GR  +++ V   G    M   T +V +  + G +++AEA    S+  +
Sbjct: 557 LFACSHAGLVEEGRNFYNLMVHNYGIPPSMEHCTCMVDLLGRAGYLEEAEAFLLSSSFSK 616

Query: 419 DTASWNMMI 427
           +   W  ++
Sbjct: 617 EPGIWGSLL 625


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/598 (35%), Positives = 333/598 (55%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A ++F  MP+ N VS+  L+ GY++     + + LF  ++    + + F  STVLK   +
Sbjct: 98  AAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVS 157

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           + + K G  VHA   +LG   D F+  +L+D YS CG A+ A +VF  I+  D+V+W  +
Sbjct: 158 AEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGM 217

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           + C  +  C +E+ K+F+ MR    KPN F   S+++A         G+++H    K  +
Sbjct: 218 VACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSY 277

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             +  VG  L+ +Y+++G V    +VFE +   D + W+ + +R+   E  ++ + +F +
Sbjct: 278 LEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCR 337

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M      PN  T   +L+AC+SL D+  G Q+H H +K  LD N  V  +L+DMY K G 
Sbjct: 338 MRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGR 397

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +E++   F    N    ++  +I  Y QAG  E AL  F+ M    ++  E T +S L  
Sbjct: 398 MENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRA 457

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +A L  G  +HS++VKT +  +  V  AL+ MYAKCG+I DA  VF      D  SW
Sbjct: 458 CAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSW 517

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N MI GY  HGL  +AL+ F  ML+    PD++TFV +LSACS+ GL++ G+ +F S+ +
Sbjct: 518 NAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVE 577

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            Y I P  +H+ CM+ +LGR+G   +    + E    P+ +VW  LL AC  H ++EL  
Sbjct: 578 EYDIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGR 637

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
             A+++LE+EP+ E+ +V  S+I A   RW + + +R  +  +GI+KEP  SWIE  G
Sbjct: 638 ISAQRVLEIEPEDEATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQG 695



 Score =  253 bits (645), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 160/509 (31%), Positives = 265/509 (52%), Gaps = 4/509 (0%)

Query: 48  KFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALK 107
           +F+ +   ++L+    +G    G+ +H   I+ G  LD F +  L++ Y K     +A K
Sbjct: 41  EFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAK 100

Query: 108 VFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD 167
           +F  + D + V++  +I    Q     EA  +F+ ++    + N FV +++++       
Sbjct: 101 LFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEW 160

Query: 168 QRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR 227
            + G S+HA + K GF+SD  VG AL+  Y   G      +VF+AI ++D VSW  + + 
Sbjct: 161 AKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVAC 220

Query: 228 FQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGN 287
           + + E  ++ L++F +M + GFKPN  TF  +LKAC  L     GK +H    K S    
Sbjct: 221 YVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEE 280

Query: 288 HVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL 347
             VG  L+D+Y KSG ++DA   F+ +   D+  ++ +I  YAQ+ ++E A++ F +MR 
Sbjct: 281 LFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRR 340

Query: 348 EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
             +  N+FTLAS L  C+ +  L  G  +H   VK G  +++FVS AL+ MYAKCG +++
Sbjct: 341 GLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMEN 400

Query: 408 AEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
           +  +F  S      SWN +I GYV+ G GEKAL  F+ ML+      E+T+  VL AC+ 
Sbjct: 401 SLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAG 460

Query: 468 MGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVW 526
           +  +E G + H  S+K IY     + +   +ID+  + G   +    + +     + + W
Sbjct: 461 IAALEPGSQIHSLSVKTIYDKNTVVGN--ALIDMYAKCGNIKD-ARLVFDMLREHDQVSW 517

Query: 527 ENLLGACSWHGNIELDEKDAEKLLELEPK 555
             ++   S HG      K  E +LE E K
Sbjct: 518 NAMISGYSVHGLYGEALKTFESMLETECK 546



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 115/373 (30%), Positives = 191/373 (51%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E A++VF ++   ++VSW  ++  Y E+   ++ + LF  M+ +  K + F+ ++VLK  
Sbjct: 197 ECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKAC 256

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
                   G+ VH  A +     + F+   L+D+Y K G  D+AL+VF  +   DV+ W 
Sbjct: 257 VGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWS 316

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            +I    Q    +EA ++F  MR   V PNQF L SL++A     D + G  IH  + K 
Sbjct: 317 FMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKV 376

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G + +  V NAL+ MY + GR+    ++F    +   VSWN +   +    + ++ L +F
Sbjct: 377 GLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILF 436

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
             ML    +    T+  +L+AC+ ++ +  G Q+H+ ++K   D N VVG +L+DMY K 
Sbjct: 437 KDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKC 496

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G ++DA + FD L   D  ++ A+I+ Y+  G    ALK F  M     K ++ T    L
Sbjct: 497 GNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGIL 556

Query: 362 NGCSPVATLANGR 374
           + CS    L  G+
Sbjct: 557 SACSNAGLLDRGQ 569



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 111/419 (26%), Positives = 195/419 (46%), Gaps = 8/419 (1%)

Query: 126 CLDQQGCCQEAAKIFNLMRESSVKP--NQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           C      C    + F   R S   P  N ++  SL+++    GD   G+ +H  I K G 
Sbjct: 16  CKSNTALCIITQRSFLAQRTSHSSPEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGN 75

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D    N L++ Y++   +   +++F+ +  +++VS+  L   +       + + +F +
Sbjct: 76  CLDLFANNILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSR 135

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           +  +G + N   F  +LK   S      G  +HA   K   D +  VGT+L+D Y   G 
Sbjct: 136 LQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGY 195

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
            E A   FD++  KD+ ++T ++  Y +    E +LK F +MR+ G K N FT AS L  
Sbjct: 196 AECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKA 255

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C  +     G+ +H  A KT +L ++FV   L+ +Y K G +DDA  VF+     D   W
Sbjct: 256 CVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPW 315

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           + MI  Y +    E+A+E F  M     +P++ T   +L AC+ +  ++ G +    + K
Sbjct: 316 SFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVK 375

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNA--LVWENLLGACSWHGNIE 540
           + G+   +     ++D+  + G+   +EN +     +PN   + W  ++      GN E
Sbjct: 376 V-GLDMNVFVSNALMDMYAKCGR---MENSLQLFSESPNCTDVSWNTVIVGYVQAGNGE 430



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 118/228 (51%), Gaps = 2/228 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME + ++F   P    VSWN ++ GY ++G+G+K + LF  M + + + ++ + S+VL+ 
Sbjct: 398 MENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRA 457

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    ++ G  +H+++++     +  +  +L+DMY+KCG   +A  VF  +++ D V+W
Sbjct: 458 CAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSW 517

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES-IHAVIC 179
            A+I+     G   EA K F  M E+  KP++     ++ A +  G    G++   +++ 
Sbjct: 518 NAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVE 577

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSV-SWNALFS 226
           +Y  E        +V +   +G +   +++   I  + SV  W AL S
Sbjct: 578 EYDIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLS 625


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/606 (35%), Positives = 353/606 (58%), Gaps = 7/606 (1%)

Query: 2   ELAKRVFKSM-PELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           E A+ +F+ M  + ++VSW+A+++ +A +    + +  F  M ++    +++  + V++ 
Sbjct: 96  ETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRA 155

Query: 61  FANSGYIKAGQVVHAMAIRLG-CALDKFLSCSLVDMYSK-CGLADNALKVFYRIKDPDVV 118
            +N+ Y   G++++   ++ G    D  + C L+DM+ K  G   +A KVF ++ + ++V
Sbjct: 156 CSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLV 215

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            W  +IT   Q GC ++A  +F  M  S   P++F  +S++ A TE G    G+ +H+ +
Sbjct: 216 TWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRV 275

Query: 179 CKYGFESDTLVGNALVSMYME---NGRVSYGSRVFEAIAHQDSVSWNALFSRF-QDYESP 234
            + G   D  VG +LV MY +   +G V    +VFE +   + +SW A+ + + Q  E  
Sbjct: 276 IRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECD 335

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
            + + +F +M+    +PN  +F  +LKAC +LSD   G+Q++++ +K  +   + VG SL
Sbjct: 336 KEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSL 395

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           + MY +SG +EDA  AFD L  K+L +Y AI+  YA+  ++E A   F ++   GI  + 
Sbjct: 396 ISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISA 455

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
           FT AS L+G + +  +  G  +H   +K G+  +  +  AL++MY++CG+I+ A  VF  
Sbjct: 456 FTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNE 515

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
              R+  SW  MI G+ KHG   +ALE F  ML+ G  P+EIT+V VLSACSH+G+I EG
Sbjct: 516 MEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEG 575

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
           +KHF+S+ K +GI P ++H+ACM+D+LGR+G   E   FI    L  +ALVW  LLGAC 
Sbjct: 576 QKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACR 635

Query: 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSC 594
            HGN EL    AE +LE EP   + Y+  S++ A+ G+W D   +R  +  + + KE  C
Sbjct: 636 VHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGC 695

Query: 595 SWIEVD 600
           SWIEV+
Sbjct: 696 SWIEVE 701



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 153/561 (27%), Positives = 275/561 (49%), Gaps = 21/561 (3%)

Query: 18  SWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLST---VLKGFANSGYIKAGQVVH 74
           ++  L N      D  ++ H F ++  M ++ +   L+T   +LK        + G++VH
Sbjct: 8   NFEPLKNRLIRQLDVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVH 67

Query: 75  AMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP-DVVAWGAIITCLDQQGCC 133
              ++ G  LD  +  +L+ +YSKCG  + A  +F  + +  D+V+W A+++C       
Sbjct: 68  RKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSME 127

Query: 134 QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF-ESDTLVGNA 192
            +A   F  M E    PN++   +++RA +       GE I+  + K G+ E+D  VG  
Sbjct: 128 WQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCE 187

Query: 193 LVSMYME-NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKP 251
           L+ M+++ +G +    +VF+ +  ++ V+W  + +RF         + +F  M L G+ P
Sbjct: 188 LIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVP 247

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK---SGCLEDAG 308
           +  T+  +L AC+ L  +  GKQLH+  I+  L  +  VG SLVDMY K    G ++D+ 
Sbjct: 248 DRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSR 307

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEM-ALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367
             F+ +   ++ ++TAIIT+Y Q+GE +  A++ F KM    I+ N F+ +S L  C  +
Sbjct: 308 KVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNL 367

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
           +    G  ++S AVK G      V  +L++MYA+ G ++DA   F     ++  S+N ++
Sbjct: 368 SDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIV 427

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYG 486
            GY K+   E+A   F  + D G      TF  +LS  + +G + +G++ H   +K  Y 
Sbjct: 428 DGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYK 487

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDA 546
               I +   +I +  R G          E +   N + W +++   + HG        A
Sbjct: 488 SNQCICN--ALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMITGFAKHGF-------A 537

Query: 547 EKLLELEPKMESNYVFPSDIS 567
            + LE+  KM      P++I+
Sbjct: 538 TRALEMFHKMLETGTKPNEIT 558



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 97/166 (58%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A++ F  + E N+VS+NA+++GYA++   ++   LF  + D     S F+ +++L G
Sbjct: 405 MEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSG 464

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+ G +  G+ +H   ++ G   ++ +  +L+ MYS+CG  + A +VF  ++D +V++W
Sbjct: 465 AASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISW 524

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
            ++IT   + G    A ++F+ M E+  KPN+    +++ A +  G
Sbjct: 525 TSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVG 570



 Score = 45.8 bits (107), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 76/167 (45%), Gaps = 7/167 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A +VF  M + NV+SW +++ G+A+ G   + + +F  M +   K ++ +   VL  
Sbjct: 506 IEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSA 565

Query: 61  FANSGYIKAGQV-VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            ++ G I  GQ   ++M    G          +VD+  + GL   A++    +    D +
Sbjct: 566 CSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADAL 625

Query: 119 AWGAIITCLDQQGCCQ---EAAKIFNLMRESSVKPNQFVLTSLVRAT 162
            W  ++      G  +    AA++  ++ +    P  ++L S + A+
Sbjct: 626 VWRTLLGACRVHGNTELGRHAAEM--ILEQEPDDPAAYILLSNLHAS 670


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/606 (35%), Positives = 353/606 (58%), Gaps = 7/606 (1%)

Query: 2   ELAKRVFKSM-PELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           E A+ +F+ M  + ++VSW+A+++ +A +    + +  F  M ++    +++  + V++ 
Sbjct: 78  ETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRA 137

Query: 61  FANSGYIKAGQVVHAMAIRLG-CALDKFLSCSLVDMYSK-CGLADNALKVFYRIKDPDVV 118
            +N+ Y   G++++   ++ G    D  + C L+DM+ K  G   +A KVF ++ + ++V
Sbjct: 138 CSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLV 197

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            W  +IT   Q GC ++A  +F  M  S   P++F  +S++ A TE G    G+ +H+ +
Sbjct: 198 TWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRV 257

Query: 179 CKYGFESDTLVGNALVSMYME---NGRVSYGSRVFEAIAHQDSVSWNALFSRF-QDYESP 234
            + G   D  VG +LV MY +   +G V    +VFE +   + +SW A+ + + Q  E  
Sbjct: 258 IRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECD 317

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
            + + +F +M+    +PN  +F  +LKAC +LSD   G+Q++++ +K  +   + VG SL
Sbjct: 318 KEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSL 377

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           + MY +SG +EDA  AFD L  K+L +Y AI+  YA+  ++E A   F ++   GI  + 
Sbjct: 378 ISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISA 437

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
           FT AS L+G + +  +  G  +H   +K G+  +  +  AL++MY++CG+I+ A  VF  
Sbjct: 438 FTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNE 497

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
              R+  SW  MI G+ KHG   +ALE F  ML+ G  P+EIT+V VLSACSH+G+I EG
Sbjct: 498 MEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEG 557

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
           +KHF+S+ K +GI P ++H+ACM+D+LGR+G   E   FI    L  +ALVW  LLGAC 
Sbjct: 558 QKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACR 617

Query: 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSC 594
            HGN EL    AE +LE EP   + Y+  S++ A+ G+W D   +R  +  + + KE  C
Sbjct: 618 VHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGC 677

Query: 595 SWIEVD 600
           SWIEV+
Sbjct: 678 SWIEVE 683



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 151/548 (27%), Positives = 271/548 (49%), Gaps = 21/548 (3%)

Query: 31  DGQKVMHLFCSMKDMEKKFSKFSLST---VLKGFANSGYIKAGQVVHAMAIRLGCALDKF 87
           D  ++ H F ++  M ++ +   L+T   +LK        + G++VH   ++ G  LD  
Sbjct: 3   DVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSV 62

Query: 88  LSCSLVDMYSKCGLADNALKVFYRIKDP-DVVAWGAIITCLDQQGCCQEAAKIFNLMRES 146
           +  +L+ +YSKCG  + A  +F  + +  D+V+W A+++C        +A   F  M E 
Sbjct: 63  VLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLEL 122

Query: 147 SVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF-ESDTLVGNALVSMYME-NGRVS 204
              PN++   +++RA +       GE I+  + K G+ E+D  VG  L+ M+++ +G + 
Sbjct: 123 GFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLG 182

Query: 205 YGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACS 264
              +VF+ +  ++ V+W  + +RF         + +F  M L G+ P+  T+  +L AC+
Sbjct: 183 SAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACT 242

Query: 265 SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK---SGCLEDAGVAFDSLANKDLFA 321
            L  +  GKQLH+  I+  L  +  VG SLVDMY K    G ++D+   F+ +   ++ +
Sbjct: 243 ELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMS 302

Query: 322 YTAIITSYAQAGEAEM-ALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIA 380
           +TAIIT+Y Q+GE +  A++ F KM    I+ N F+ +S L  C  ++    G  ++S A
Sbjct: 303 WTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYA 362

Query: 381 VKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKAL 440
           VK G      V  +L++MYA+ G ++DA   F     ++  S+N ++ GY K+   E+A 
Sbjct: 363 VKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAF 422

Query: 441 EAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMID 499
             F  + D G      TF  +LS  + +G + +G++ H   +K  Y     I +   +I 
Sbjct: 423 LLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICN--ALIS 480

Query: 500 ILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESN 559
           +  R G          E +   N + W +++   + HG        A + LE+  KM   
Sbjct: 481 MYSRCGNIEAAFQVFNEME-DRNVISWTSMITGFAKHGF-------ATRALEMFHKMLET 532

Query: 560 YVFPSDIS 567
              P++I+
Sbjct: 533 GTKPNEIT 540



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 97/166 (58%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A++ F  + E N+VS+NA+++GYA++   ++   LF  + D     S F+ +++L G
Sbjct: 387 MEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSG 446

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+ G +  G+ +H   ++ G   ++ +  +L+ MYS+CG  + A +VF  ++D +V++W
Sbjct: 447 AASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISW 506

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
            ++IT   + G    A ++F+ M E+  KPN+    +++ A +  G
Sbjct: 507 TSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVG 552



 Score = 45.4 bits (106), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 76/167 (45%), Gaps = 7/167 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A +VF  M + NV+SW +++ G+A+ G   + + +F  M +   K ++ +   VL  
Sbjct: 488 IEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSA 547

Query: 61  FANSGYIKAGQV-VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            ++ G I  GQ   ++M    G          +VD+  + GL   A++    +    D +
Sbjct: 548 CSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADAL 607

Query: 119 AWGAIITCLDQQGCCQ---EAAKIFNLMRESSVKPNQFVLTSLVRAT 162
            W  ++      G  +    AA++  ++ +    P  ++L S + A+
Sbjct: 608 VWRTLLGACRVHGNTELGRHAAEM--ILEQEPDDPAAYILLSNLHAS 652


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/600 (37%), Positives = 336/600 (56%), Gaps = 1/600 (0%)

Query: 1   MELAKRVF-KSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           M+ A+RVF ++  E N VSWN L++ Y ++      + +F  M     + ++F  S V+ 
Sbjct: 58  MDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 117

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
               S  I AG+ VHAM +R+G   D F + +LVDMY K G  D A  +F ++ D DVV+
Sbjct: 118 ACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVS 177

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W A+I+     G    A ++   M+ S + PN F+L+S+++A    G    G  IH  + 
Sbjct: 178 WNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMI 237

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K   +SD  +G  LV MY +N  +    +VF+ ++H+D + WNAL S        D+   
Sbjct: 238 KANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFS 297

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           IFY +  +G   N  T   +LK+ +SL      +Q+HA   K     +  V   L+D Y 
Sbjct: 298 IFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYW 357

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K  CL DA   F+  ++ D+ A T++IT+ +Q    E A+K F +M  +G++ + F L+S
Sbjct: 358 KCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSS 417

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            LN C+ ++    G+ +H+  +K   + D F   ALV  YAKCGSI+DAE  F     R 
Sbjct: 418 LLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERG 477

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SW+ MIGG  +HG G++ALE F  M+DEG  P+ IT   VL AC+H GL++E K++F+
Sbjct: 478 VVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFN 537

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           S+K+++GI  T +H++CMID+LGRAGK  +    +       NA VW  LLGA   H + 
Sbjct: 538 SMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDP 597

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           EL +  AEKL  LEP+    +V  ++  A+ G WN+ + VR L+    IKKEP+ SW+EV
Sbjct: 598 ELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEV 657



 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 154/522 (29%), Positives = 259/522 (49%), Gaps = 15/522 (2%)

Query: 50  SKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF 109
           ++F+L  VLK   ++   + G  VHAMA+  G   D F++ +LV MY   G  D+A +VF
Sbjct: 9   NEFALPVVLKCVPDA---QLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVF 65

Query: 110 YRI-KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ 168
                + + V+W  +++   +   C +A ++F  M  S ++P +F  + +V A T + + 
Sbjct: 66  DEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNI 125

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228
             G  +HA++ + G+E D    NALV MY++ GRV   S +FE +   D VSWNAL S  
Sbjct: 126 DAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGC 185

Query: 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH 288
                  + + +  QM   G  PN+     ILKAC+       G+Q+H   IK + D + 
Sbjct: 186 VLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDD 245

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
            +G  LVDMY K+  L+DA   FD ++++DL  + A+I+  +  G  + A   F  +R E
Sbjct: 246 YIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKE 305

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
           G+  N  TLA+ L   + +   +  R +H++A K G + D  V   L+  Y KC  + DA
Sbjct: 306 GLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDA 365

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
             VF+  +  D  +   MI    +   GE A++ F  ML +G  PD      +L+AC+ +
Sbjct: 366 IRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASL 425

Query: 469 GLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV-WE 527
              E+GK+  + + K   ++      A ++    + G   + E  +  + L    +V W 
Sbjct: 426 SAYEQGKQVHAHLIKRQFMSDAFAGNA-LVYTYAKCGSIEDAE--LAFSSLPERGVVSWS 482

Query: 528 NLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISAT 569
            ++G  + HG+        ++ LEL  +M    + P+ I+ T
Sbjct: 483 AMIGGLAQHGH-------GKRALELFGRMVDEGINPNHITMT 517



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 161/327 (49%), Gaps = 4/327 (1%)

Query: 143 MRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGR 202
           MR   V  N+F L  +++      D + G  +HA+    GF SD  V NALV+MY   G 
Sbjct: 1   MRAEGVCCNEFALPVVLKCVP---DAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGF 57

Query: 203 VSYGSRVF-EAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILK 261
           +    RVF EA + +++VSWN L S +   +     +++F +M+  G +P    F  ++ 
Sbjct: 58  MDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 117

Query: 262 ACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFA 321
           AC+   ++  G+Q+HA  ++   + +     +LVDMY K G ++ A V F+ + + D+ +
Sbjct: 118 ACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVS 177

Query: 322 YTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAV 381
           + A+I+     G    A++   +M+  G+  N F L+S L  C+       GR +H   +
Sbjct: 178 WNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMI 237

Query: 382 KTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALE 441
           K     D ++   LV MYAK   +DDA  VF   + RD   WN +I G    G  ++A  
Sbjct: 238 KANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFS 297

Query: 442 AFRMMLDEGYVPDEITFVVVLSACSHM 468
            F  +  EG   +  T   VL + + +
Sbjct: 298 IFYGLRKEGLGVNRTTLAAVLKSTASL 324



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 110/210 (52%), Gaps = 9/210 (4%)

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404
           MR EG+  NEF L   L  C P A L  G  +H++A+ TG   D+FV+ ALVAMY   G 
Sbjct: 1   MRAEGVCCNEFALPVVLK-CVPDAQL--GAQVHAMAMATGFGSDVFVANALVAMYGGFGF 57

Query: 405 IDDAEAVF-KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           +DDA  VF +  + R+  SWN ++  YVK+     A++ F  M+  G  P E  F  V++
Sbjct: 58  MDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 117

Query: 464 ACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNA 523
           AC+    I+ G++  + + ++ G    +     ++D+  + G+  +I + I E     + 
Sbjct: 118 ACTGSRNIDAGRQVHAMVVRM-GYEKDVFTANALVDMYVKMGR-VDIASVIFEKMPDSDV 175

Query: 524 LVWENLLGACSWHGNIELDEKDAEKLLELE 553
           + W  L+  C  +G+   D +  E LL+++
Sbjct: 176 VSWNALISGCVLNGH---DHRAIELLLQMK 202


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/600 (37%), Positives = 336/600 (56%), Gaps = 1/600 (0%)

Query: 1   MELAKRVF-KSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           M+ A+RVF ++  E N VSWN L++ Y ++      + +F  M     + ++F  S V+ 
Sbjct: 151 MDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 210

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
               S  I AG+ VHAM +R+G   D F + +LVDMY K G  D A  +F ++ D DVV+
Sbjct: 211 ACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVS 270

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W A+I+     G    A ++   M+ S + PN F+L+S+++A    G    G  IH  + 
Sbjct: 271 WNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMI 330

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K   +SD  +G  LV MY +N  +    +VF+ ++H+D + WNAL S        D+   
Sbjct: 331 KANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFS 390

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           IFY +  +G   N  T   +LK+ +SL      +Q+HA   K     +  V   L+D Y 
Sbjct: 391 IFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYW 450

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K  CL DA   F+  ++ D+ A T++IT+ +Q    E A+K F +M  +G++ + F L+S
Sbjct: 451 KCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSS 510

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            LN C+ ++    G+ +H+  +K   + D F   ALV  YAKCGSI+DAE  F     R 
Sbjct: 511 LLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERG 570

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SW+ MIGG  +HG G++ALE F  M+DEG  P+ IT   VL AC+H GL++E K++F+
Sbjct: 571 VVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFN 630

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           S+K+++GI  T +H++CMID+LGRAGK  +    +       NA VW  LLGA   H + 
Sbjct: 631 SMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDP 690

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           EL +  AEKL  LEP+    +V  ++  A+ G WN+ + VR L+    IKKEP+ SW+EV
Sbjct: 691 ELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEV 750



 Score =  261 bits (667), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 167/568 (29%), Positives = 283/568 (49%), Gaps = 15/568 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+RVF  +P+   VSW++L+  Y+ +G  +  +  F  M+      ++F+L  VLK   +
Sbjct: 56  ARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD 115

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI-KDPDVVAWGA 122
           +   + G  VHAMA+  G   D F++ +LV MY   G  D+A +VF     + + V+W  
Sbjct: 116 A---QLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNG 172

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +++   +   C +A ++F  M  S ++P +F  + +V A T + +   G  +HA++ + G
Sbjct: 173 LMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMG 232

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           +E D    NALV MY++ GRV   S +FE +   D VSWNAL S         + + +  
Sbjct: 233 YEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLL 292

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           QM   G  PN+     ILKAC+       G+Q+H   IK + D +  +G  LVDMY K+ 
Sbjct: 293 QMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNH 352

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            L+DA   FD ++++DL  + A+I+  +  G  + A   F  +R EG+  N  TLA+ L 
Sbjct: 353 FLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLK 412

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
             + +   +  R +H++A K G + D  V   L+  Y KC  + DA  VF+  +  D  +
Sbjct: 413 STASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIA 472

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
              MI    +   GE A++ F  ML +G  PD      +L+AC+ +   E+GK+  + + 
Sbjct: 473 VTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLI 532

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV-WENLLGACSWHGNIEL 541
           K   ++      A ++    + G   + E  +  + L    +V W  ++G  + HG+   
Sbjct: 533 KRQFMSDAFAGNA-LVYTYAKCGSIEDAE--LAFSSLPERGVVSWSAMIGGLAQHGH--- 586

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISAT 569
                ++ LEL  +M    + P+ I+ T
Sbjct: 587 ----GKRALELFGRMVDEGINPNHITMT 610



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 122/417 (29%), Positives = 203/417 (48%), Gaps = 6/417 (1%)

Query: 53  SLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI 112
           ++S  L  +A +  +  G  +HA  ++ G      L   L+  YSKC     A +VF  I
Sbjct: 6   TISQQLTRYAAAQALLPGAHLHANLLKSGFLAS--LRNHLISFYSKCRRPCCARRVFDEI 63

Query: 113 KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172
            DP  V+W +++T     G  + A + F+ MR   V  N+F L  +++      D + G 
Sbjct: 64  PDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVP---DAQLGA 120

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF-EAIAHQDSVSWNALFSRFQDY 231
            +HA+    GF SD  V NALV+MY   G +    RVF EA + +++VSWN L S +   
Sbjct: 121 QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKN 180

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
           +     +++F +M+  G +P    F  ++ AC+   ++  G+Q+HA  ++   + +    
Sbjct: 181 DQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTA 240

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
            +LVDMY K G ++ A V F+ + + D+ ++ A+I+     G    A++   +M+  G+ 
Sbjct: 241 NALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLV 300

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            N F L+S L  C+       GR +H   +K     D ++   LV MYAK   +DDA  V
Sbjct: 301 PNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKV 360

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
           F   + RD   WN +I G    G  ++A   F  +  EG   +  T   VL + + +
Sbjct: 361 FDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASL 417


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/601 (35%), Positives = 348/601 (57%), Gaps = 8/601 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKF----SKFSLSTVLK 59
           A+ VF  MP  N+++W+++++ Y++ G  ++ + +F    D+++K     ++F L++V++
Sbjct: 103 ARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFV---DLQRKSGEHPNEFVLASVIR 159

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
                G ++ G  +H   +R G   D ++  SL+D YSK G  + A  VF ++ +   V 
Sbjct: 160 ACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVT 219

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  II    + G    + ++F  MRE++V P+++V++S++ A +       G+ IHA + 
Sbjct: 220 WTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVL 279

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           + G E D  V N L+  Y +  RV  G ++F+ +  ++ +SW  + S +       + ++
Sbjct: 280 RRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMK 339

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F +M   G+KP+      +L +C S   +  G+Q+HA+TIK +L+ +  V   L+DMY 
Sbjct: 340 LFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYA 399

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           KS  L DA   FD +A +++ +Y A+I  Y+   +   AL+ F +MR+   K NEFT A+
Sbjct: 400 KSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAA 459

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            +   S +A+L +G+  H+  VK G     FV+ ALV MYAKCGSI++A  +F  S  RD
Sbjct: 460 LITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRD 519

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
              WN MI  + +HG  E+AL  FR M+ EG  P+ +TFV VLSACSH G +E+G  HF+
Sbjct: 520 VVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFN 579

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           S+   +GI P  +H+AC++ +LGR+GK  E + FI +  + P A+VW +LL AC   GN+
Sbjct: 580 SMPG-FGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNV 638

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           EL +  AE  +  +PK   +Y+  S+I A++G W D   VR  + S  + KEP  SWIEV
Sbjct: 639 ELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEV 698

Query: 600 D 600
           +
Sbjct: 699 N 699



 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 132/472 (27%), Positives = 230/472 (48%), Gaps = 5/472 (1%)

Query: 71  QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
           +++H   I  G   D FL+  L+++ SK    DNA  VF ++   +++ W ++++   QQ
Sbjct: 69  KIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQ 128

Query: 131 GCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
           G  +EA  +F +L R+S   PN+FVL S++RA T+ G    G  +H  + + GF+ D  V
Sbjct: 129 GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYV 188

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
           G +L+  Y +NG +     VF+ ++ + +V+W  + + +         L +F QM     
Sbjct: 189 GTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNV 248

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
            P+      +L ACS L  +  GKQ+HA+ ++   + +  V   L+D Y K   ++    
Sbjct: 249 VPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRK 308

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369
            FD +  K++ ++T +I+ Y Q      A+K F +M   G K + F   S L  C     
Sbjct: 309 LFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREA 368

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           L  GR +H+  +K     D FV   L+ MYAK   + DA+ VF   A ++  S+N MI G
Sbjct: 369 LEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEG 428

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGIT 488
           Y       +ALE F  M      P+E TF  +++A S++  +  G++ H   +K      
Sbjct: 429 YSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFC 488

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           P + +   ++D+  + G   E       + +  + + W +++   + HG  E
Sbjct: 489 PFVTN--ALVDMYAKCGSIEEARKMFN-SSIWRDVVCWNSMISTHAQHGEAE 537



 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 113/373 (30%), Positives = 196/373 (52%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ VF  + E   V+W  ++ GY + G     + LF  M++      ++ +S+VL  
Sbjct: 202 IEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSA 261

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +   +++ G+ +HA  +R G  +D  +   L+D Y+KC       K+F ++   ++++W
Sbjct: 262 CSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISW 321

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+   Q     EA K+F  M     KP+ F  TS++ +         G  +HA   K
Sbjct: 322 TTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIK 381

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              ESD  V N L+ MY ++  +    +VF+ +A Q+ +S+NA+   +   E   + L +
Sbjct: 382 ANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALEL 441

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F++M ++  KPN  TF  ++ A S+L+ +  G+Q H   +K  LD    V  +LVDMY K
Sbjct: 442 FHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAK 501

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +E+A   F+S   +D+  + ++I+++AQ GEAE AL  FR+M  EGI+ N  T  + 
Sbjct: 502 CGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAV 561

Query: 361 LNGCSPVATLANG 373
           L+ CS    + +G
Sbjct: 562 LSACSHAGRVEDG 574



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 121/232 (52%), Gaps = 1/232 (0%)

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
           +   +P    F  +L+   S + +   K +H   I   L  +  +   L+++  KS  ++
Sbjct: 42  IPNLRPKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDRVD 101

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFTLASCLNGC 364
           +A V FD + +K+L  ++++++ Y+Q G +E AL  F  + R  G   NEF LAS +  C
Sbjct: 102 NARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRAC 161

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
           + +  +  G  LH   V++G   D++V T+L+  Y+K G+I++A  VF   + +   +W 
Sbjct: 162 TQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWT 221

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            +I GY K G    +LE F  M +   VPD      VLSACS +  +E GK+
Sbjct: 222 TIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQ 273


>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic [Vitis vinifera]
 gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
          Length = 893

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/596 (35%), Positives = 340/596 (57%), Gaps = 4/596 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A + F  MP  NVVSW  +++G+ +  D     H F  M+ + +K + +++++VL  
Sbjct: 299 MDQAVKEFLRMPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTA 358

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA- 119
                 IK    +H+   + G  LD  +S +L++MYSK G+ D + +VF  ++    +A 
Sbjct: 359 CTEPVMIKEAVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAM 418

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  +I+   Q G    A ++F  M +  ++P++F  +S++           G  IH  I 
Sbjct: 419 WAVMISAFAQSGSTGRAVELFQRMLQEGLRPDKFCSSSVLSIIDSLS---LGRLIHCYIL 475

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K G  +D  VG++L +MY + G +     VFE +  +D+VSW ++ + F +++  +Q ++
Sbjct: 476 KIGLFTDISVGSSLFTMYSKCGSLEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQ 535

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F +MLL+  +P+  T    L ACS+L  +  GK++H + ++  +    +VG +LV+MY 
Sbjct: 536 LFREMLLEEIRPDQMTLTAALTACSALHSLEKGKEVHGYALRARVGKEVLVGGALVNMYS 595

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G +  A   FD L  KD F+ +++++ YAQ G  E AL  F ++R+  +  + FT++S
Sbjct: 596 KCGAIVLARRVFDMLPQKDQFSCSSLVSGYAQNGYIEDALLLFHEIRMADLWIDSFTVSS 655

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            +   + + +L  G  LH+   K G   ++ V ++LV MY+KCGSID+   VF+     D
Sbjct: 656 VIGAVAILNSLDIGTQLHACVTKMGLNAEVSVGSSLVTMYSKCGSIDECHKVFEQIEKPD 715

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SW  MI  Y +HG G +AL+ + +M  EG  PD +TFV VLSACSH G++EEG  H +
Sbjct: 716 LISWTAMIVSYAQHGKGAEALKVYDLMRKEGTKPDSVTFVGVLSACSHNGMVEEGYSHLN 775

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           S+ K YGI P   H+ACM+D+LGR+G+  E E FI    + P+AL+W  LL AC  HG+I
Sbjct: 776 SMAKEYGIEPGYYHYACMVDLLGRSGRLKEAERFINNMPIEPDALLWGILLAACKVHGDI 835

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCS 595
           EL    A++++ELEP     YV  S+I A  G W D   +R+L+   G+KKEP  S
Sbjct: 836 ELGRLAAKRVIELEPCEAGAYVTLSNICADMGWWEDVMKIRSLMEGTGVKKEPGWS 891



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 153/537 (28%), Positives = 274/537 (51%), Gaps = 6/537 (1%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E A RVF+ +   NVV WNA+++G  ++ +    + LFC M       + F+ S++L   
Sbjct: 199 EDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSILTAC 258

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           A    ++ G+ V    I+ G   D F+  +++D+Y+KC   D A+K F R+   +VV+W 
Sbjct: 259 AALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNVVSWT 318

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            II+   Q+     A   F  MR+   K N + +TS++ A TE    +    +H+ I K 
Sbjct: 319 TIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWIFKT 378

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS-WNALFSRFQDYESPDQGLRI 240
           GF  D+ V +AL++MY + G V    RVF  +    +++ W  + S F    S  + + +
Sbjct: 379 GFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRAVEL 438

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +ML +G +P+      +L    SLS    G+ +H + +K  L  +  VG+SL  MY K
Sbjct: 439 FQRMLQEGLRPDKFCSSSVLSIIDSLS---LGRLIHCYILKIGLFTDISVGSSLFTMYSK 495

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G LE++   F+ + +KD  ++ ++IT +++   AE A++ FR+M LE I+ ++ TL + 
Sbjct: 496 CGSLEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAA 555

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L  CS + +L  G+ +H  A++     ++ V  ALV MY+KCG+I  A  VF     +D 
Sbjct: 556 LTACSALHSLEKGKEVHGYALRARVGKEVLVGGALVNMYSKCGAIVLARRVFDMLPQKDQ 615

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            S + ++ GY ++G  E AL  F  +       D  T   V+ A + +  ++ G +  + 
Sbjct: 616 FSCSSLVSGYAQNGYIEDALLLFHEIRMADLWIDSFTVSSVIGAVAILNSLDIGTQLHAC 675

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           + K+ G+   +   + ++ +  + G   E      + +  P+ + W  ++ + + HG
Sbjct: 676 VTKM-GLNAEVSVGSSLVTMYSKCGSIDECHKVFEQIE-KPDLISWTAMIVSYAQHG 730



 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 134/477 (28%), Positives = 244/477 (51%), Gaps = 4/477 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A R+F   P  NV+SWN L++G  ++   +     FC M+      ++F+  +VL  
Sbjct: 97  MVHALRLFDKTPHPNVISWNILISGCNQNFSFEDSWRNFCKMRFSGFDPNQFTYGSVLSA 156

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
               G    G++V+++A++ G   + ++   ++D+++K    ++AL+VF  +   +VV W
Sbjct: 157 CTALGSPLYGELVYSLALKNGFFSNGYVRAGMIDLFAKLCSFEDALRVFQDVLCENVVCW 216

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            AII+   +      A  +F  M      PN F  +S++ A     +   G  +   + K
Sbjct: 217 NAIISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSILTACAALEELEFGRGVQGWVIK 276

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G   D  VG A++ +Y +   +    + F  +  ++ VSW  + S F   +        
Sbjct: 277 CGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNVVSWTTIISGFVQKDDSISAFHF 336

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M   G K N  T   +L AC+    +    QLH+   K     +  V ++L++MY K
Sbjct: 337 FKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNVSSALINMYSK 396

Query: 301 SGCLEDAGVAFDSL-ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
            G ++ +   F  + + K+L  +  +I+++AQ+G    A++ F++M  EG++ ++F  +S
Sbjct: 397 IGVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRAVELFQRMLQEGLRPDKFCSSS 456

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L   S + +L+ GRL+H   +K G   D+ V ++L  MY+KCGS++++  VF+    +D
Sbjct: 457 VL---SIIDSLSLGRLIHCYILKIGLFTDISVGSSLFTMYSKCGSLEESYTVFEQMPDKD 513

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
             SW  MI G+ +H   E+A++ FR ML E   PD++T    L+ACS +  +E+GK+
Sbjct: 514 NVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTACSALHSLEKGKE 570



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 143/515 (27%), Positives = 252/515 (48%), Gaps = 21/515 (4%)

Query: 64  SGYIKAGQ-------VVHAMAIRLGC-ALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP 115
           S Y K+G+       ++HA  ++      + F++ SL+  Y K     +AL++F +   P
Sbjct: 51  SDYTKSGRCTLRNTKILHAHFLKTAILQSNTFMTNSLMGWYCKSNSMVHALRLFDKTPHP 110

Query: 116 DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH 175
           +V++W  +I+  +Q    +++ + F  MR S   PNQF   S++ A T  G    GE ++
Sbjct: 111 NVISWNILISGCNQNFSFEDSWRNFCKMRFSGFDPNQFTYGSVLSACTALGSPLYGELVY 170

Query: 176 AVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD 235
           ++  K GF S+  V   ++ ++ +        RVF+ +  ++ V WNA+ S         
Sbjct: 171 SLALKNGFFSNGYVRAGMIDLFAKLCSFEDALRVFQDVLCENVVCWNAIISGAVKNRENW 230

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
             L +F QM  + F PN  TF  IL AC++L ++ FG+ +    IK     +  VGT+++
Sbjct: 231 VALDLFCQMCCRFFMPNSFTFSSILTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAII 290

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
           D+Y K   ++ A   F  +  +++ ++T II+ + Q  ++  A   F++MR  G K N +
Sbjct: 291 DLYAKCRDMDQAVKEFLRMPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNY 350

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG- 414
           T+ S L  C+    +     LHS   KTG  LD  VS+AL+ MY+K G +D +E VF+  
Sbjct: 351 TITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREM 410

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
            + ++ A W +MI  + + G   +A+E F+ ML EG  PD+     VLS    + L   G
Sbjct: 411 ESTKNLAMWAVMISAFAQSGSTGRAVELFQRMLQEGLRPDKFCSSSVLSIIDSLSL---G 467

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
           +     I KI G+   I   + +  +  + G   E    + E     + + W +++   S
Sbjct: 468 RLIHCYILKI-GLFTDISVGSSLFTMYSKCGSLEESYT-VFEQMPDKDNVSWASMITGFS 525

Query: 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSDISAT 569
            H +       AE+ ++L  +M    + P  ++ T
Sbjct: 526 EHDH-------AEQAVQLFREMLLEEIRPDQMTLT 553


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/600 (37%), Positives = 338/600 (56%), Gaps = 1/600 (0%)

Query: 1   MELAKRVF-KSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           M+ A+RVF ++  E N VSWN L++ Y ++      + +F  M     + ++F  S V+ 
Sbjct: 151 MDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 210

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
               S  I+AG+ VHAM +R+G   D F + +LVDMY K G  D A  +F ++ D DVV+
Sbjct: 211 ACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVS 270

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W A+I+     G    A ++   M+ S + PN F L+S+++A +  G    G  IH  + 
Sbjct: 271 WNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMI 330

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K   +SD  +G  LV MY +N  +    +VF+ + H+D +  NAL S        D+ L 
Sbjct: 331 KANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALS 390

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +FY++  +G   N  T   +LK+ +SL      +Q+HA  +K     +  V   L+D Y 
Sbjct: 391 LFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYW 450

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K  CL DA   F+  ++ D+ A T++IT+ +Q    E A+K F +M  +G++ + F L+S
Sbjct: 451 KCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSS 510

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            LN C+ ++    G+ +H+  +K   + D F   ALV  YAKCGSI+DAE  F     R 
Sbjct: 511 LLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERG 570

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SW+ MIGG  +HG G++ALE F  M+DEG  P+ IT   VL AC+H GL++E K++F+
Sbjct: 571 VVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFN 630

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           S+K+++GI  T +H++CMID+LGRAGK  +    +       NA +W  LLGA   H + 
Sbjct: 631 SMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDP 690

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           EL +  AEKL  LEP+    +V  ++  A+ G WN+ + VR L+    IKKEP+ SWIEV
Sbjct: 691 ELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEV 750



 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 171/568 (30%), Positives = 285/568 (50%), Gaps = 15/568 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+RVF  +P+   VSW++L+  Y+ +G  +  +  F  M+      ++F+L  VLK   +
Sbjct: 56  ARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD 115

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI-KDPDVVAWGA 122
           +   + G  VHAMA+  G   D F++ +LV MY   G  D+A +VF     + + V+W  
Sbjct: 116 A---RLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNG 172

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +++   +   C +A ++F  M  S ++P +F  + +V A T + +   G  +HA++ + G
Sbjct: 173 LMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMG 232

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           ++ D    NALV MYM+ GRV   S +FE +   D VSWNAL S         + + +  
Sbjct: 233 YDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLL 292

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           QM   G  PN+ T   ILKACS       G+Q+H   IK + D +  +G  LVDMY K+ 
Sbjct: 293 QMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNH 352

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            L+DA   FD + ++DL    A+I+  +  G  + AL  F ++R EG+  N  TLA+ L 
Sbjct: 353 FLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLK 412

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
             + +   +  R +H++AVK G + D  V   L+  Y KC  + DA  VF+  +  D  +
Sbjct: 413 STASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIA 472

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
              MI    +   GE A++ F  ML +G  PD      +L+AC+ +   E+GK+  + + 
Sbjct: 473 CTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLI 532

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV-WENLLGACSWHGNIEL 541
           K   ++      A ++    + G   + E  +  + L    +V W  ++G  + HG+   
Sbjct: 533 KRQFMSDAFAGNA-LVYTYAKCGSIEDAE--LAFSSLPERGVVSWSAMIGGLAQHGH--- 586

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISAT 569
                ++ LEL  +M    + P+ I+ T
Sbjct: 587 ----GKRALELFGRMVDEGINPNHITMT 610



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 127/417 (30%), Positives = 206/417 (49%), Gaps = 6/417 (1%)

Query: 53  SLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI 112
           ++S  L  +A +  +  G  +HA  ++ G +L  F +  L+  YSKC     A +VF  I
Sbjct: 6   TISQQLTRYAAAQALLPGAHLHASLLKSG-SLASFRN-HLISFYSKCRRPCCARRVFDEI 63

Query: 113 KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172
            DP  V+W +++T     G  + A + F+ MR   V  N+F L  +++      D R G 
Sbjct: 64  PDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVP---DARLGA 120

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF-EAIAHQDSVSWNALFSRFQDY 231
            +HA+    GF SD  V NALV+MY   G +    RVF EA + +++VSWN L S +   
Sbjct: 121 QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKN 180

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
           +     +++F +M+  G +P    F  ++ AC+   ++  G+Q+HA  ++   D +    
Sbjct: 181 DQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTA 240

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
            +LVDMY K G ++ A V F+ + + D+ ++ A+I+     G    A++   +M+  G+ 
Sbjct: 241 NALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLV 300

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            N FTL+S L  CS       GR +H   +K     D ++   LV MYAK   +DDA  V
Sbjct: 301 PNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKV 360

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
           F     RD    N +I G    G  ++AL  F  +  EG   +  T   VL + + +
Sbjct: 361 FDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASL 417


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/600 (37%), Positives = 338/600 (56%), Gaps = 1/600 (0%)

Query: 1   MELAKRVF-KSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           M+ A+RVF ++  E N VSWN L++ Y ++      + +F  M     + ++F  S V+ 
Sbjct: 151 MDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 210

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
               S  I+AG+ VHAM +R+G   D F + +LVDMY K G  D A  +F ++ D DVV+
Sbjct: 211 ACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVS 270

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W A+I+     G    A ++   M+ S + PN F L+S+++A +  G    G  IH  + 
Sbjct: 271 WNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMI 330

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K   +SD  +G  LV MY +N  +    +VF+ + H+D +  NAL S        D+ L 
Sbjct: 331 KANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALS 390

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +FY++  +G   N  T   +LK+ +SL      +Q+HA  +K     +  V   L+D Y 
Sbjct: 391 LFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYW 450

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K  CL DA   F+  ++ D+ A T++IT+ +Q    E A+K F +M  +G++ + F L+S
Sbjct: 451 KCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSS 510

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            LN C+ ++    G+ +H+  +K   + D F   ALV  YAKCGSI+DAE  F     R 
Sbjct: 511 LLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERG 570

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SW+ MIGG  +HG G++ALE F  M+DEG  P+ IT   VL AC+H GL++E K++F+
Sbjct: 571 VVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFN 630

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           S+K+++GI  T +H++CMID+LGRAGK  +    +       NA +W  LLGA   H + 
Sbjct: 631 SMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDP 690

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           EL +  AEKL  LEP+    +V  ++  A+ G WN+ + VR L+    IKKEP+ SWIEV
Sbjct: 691 ELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEV 750



 Score =  268 bits (686), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 170/568 (29%), Positives = 284/568 (50%), Gaps = 15/568 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R F  +P+   VSW++L+  Y+ +G  +  +  F  M+      ++F+L  VLK   +
Sbjct: 56  ARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD 115

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI-KDPDVVAWGA 122
           +   + G  VHAMA+  G   D F++ +LV MY   G  D+A +VF     + + V+W  
Sbjct: 116 A---RLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNG 172

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +++   +   C +A ++F  M  S ++P +F  + +V A T + +   G  +HA++ + G
Sbjct: 173 LMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMG 232

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           ++ D    NALV MYM+ GRV   S +FE +   D VSWNAL S         + + +  
Sbjct: 233 YDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLL 292

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           QM   G  PN+ T   ILKACS       G+Q+H   IK + D +  +G  LVDMY K+ 
Sbjct: 293 QMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNH 352

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            L+DA   FD + ++DL    A+I+  +  G  + AL  F ++R EG+  N  TLA+ L 
Sbjct: 353 FLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLK 412

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
             + +   +  R +H++AVK G + D  V   L+  Y KC  + DA  VF+  +  D  +
Sbjct: 413 STASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIA 472

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
              MI    +   GE A++ F  ML +G  PD      +L+AC+ +   E+GK+  + + 
Sbjct: 473 CTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLI 532

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV-WENLLGACSWHGNIEL 541
           K   ++      A ++    + G   + E  +  + L    +V W  ++G  + HG+   
Sbjct: 533 KRQFMSDAFAGNA-LVYTYAKCGSIEDAE--LAFSSLPERGVVSWSAMIGGLAQHGH--- 586

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISAT 569
                ++ LEL  +M    + P+ I+ T
Sbjct: 587 ----GKRALELFGRMVDEGINPNHITMT 610



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 126/417 (30%), Positives = 205/417 (49%), Gaps = 6/417 (1%)

Query: 53  SLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI 112
           ++S  L  +A +  +  G  +HA  ++ G +L  F +  L+  YSKC     A + F  I
Sbjct: 6   TISQQLTRYAAAQALLPGAHLHASLLKSG-SLASFRN-HLISFYSKCRRPCCARRFFDEI 63

Query: 113 KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172
            DP  V+W +++T     G  + A + F+ MR   V  N+F L  +++      D R G 
Sbjct: 64  PDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVP---DARLGA 120

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF-EAIAHQDSVSWNALFSRFQDY 231
            +HA+    GF SD  V NALV+MY   G +    RVF EA + +++VSWN L S +   
Sbjct: 121 QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKN 180

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
           +     +++F +M+  G +P    F  ++ AC+   ++  G+Q+HA  ++   D +    
Sbjct: 181 DQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTA 240

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
            +LVDMY K G ++ A V F+ + + D+ ++ A+I+     G    A++   +M+  G+ 
Sbjct: 241 NALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLV 300

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            N FTL+S L  CS       GR +H   +K     D ++   LV MYAK   +DDA  V
Sbjct: 301 PNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKV 360

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
           F     RD    N +I G    G  ++AL  F  +  EG   +  T   VL + + +
Sbjct: 361 FDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASL 417


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/608 (35%), Positives = 344/608 (56%), Gaps = 12/608 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAES-----GDGQKVMHLFCSMKDMEKKFSKFSLSTVL 58
           A++VF + PE ++V+WNA+L  YA S     G+ Q+ +HLF  ++      ++ +L+ VL
Sbjct: 131 ARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVL 190

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
           K   NSG + A + VH  AI++G   D F+S +LV++YSKCG   +A  +F  +++ DVV
Sbjct: 191 KLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVV 250

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG--DQRCGESIHA 176
            W  ++    Q G  +EA ++F+    S ++P++F +  ++      G  D   G+ +H 
Sbjct: 251 LWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHG 310

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
           +  K G +SD  V N+LV+MY + G   +   VF  + H D +SWN++ S        ++
Sbjct: 311 IAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEE 370

Query: 237 GLRIFYQMLLKGFKPNMCTFIVIL-----KACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
            + +F  +L +G KP+  T   I      KAC  L  +  GKQ+HAH IK   D +  V 
Sbjct: 371 SVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVN 430

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
           + ++DMY K G + +AG+ F+ ++  D  A+T++I+     G  + AL+ + +MR   + 
Sbjct: 431 SGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVM 490

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            +E+T A+ +   S V  L  GR LH+  +K   + D FV T+LV MYAKCG+I+DA  +
Sbjct: 491 PDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRL 550

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           FK   +R+ A WN M+ G  +HG  E+A+  F+ M   G  PD ++F+ +LSACSH GL 
Sbjct: 551 FKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLT 610

Query: 472 EEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLG 531
            E  ++  S+   YGI P I+H++C++D LGRAG   E +  I       +A +   LLG
Sbjct: 611 SEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLG 670

Query: 532 ACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
           AC   G++E  ++ A +L  LEP   + YV  S+I A   RW+D +  R ++  + +KK+
Sbjct: 671 ACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKD 730

Query: 592 PSCSWIEV 599
           P  SWI+V
Sbjct: 731 PGFSWIDV 738



 Score =  224 bits (572), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 150/535 (28%), Positives = 258/535 (48%), Gaps = 31/535 (5%)

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII----- 124
           G+  HA  +  G A D FLS +L+ MYSKCG   +A +VF    + D+V W AI+     
Sbjct: 96  GKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAA 155

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
           +     G  QE   +F L+R S     +  L  +++    +G     E +H    K G E
Sbjct: 156 SVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLE 215

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
            D  V  ALV++Y + GR+     +F+ +  +D V WN +   +       +  ++F + 
Sbjct: 216 WDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEF 275

Query: 245 LLKGFKPNMCTFIVILKAC--SSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
              G +P+  +  +IL  C  +   D+  GKQ+H   +K  LD +  V  SLV+MY K G
Sbjct: 276 HRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMG 335

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS--- 359
           C   A   F+ + + DL ++ ++I+S AQ+   E ++  F  +  EG+K + FTLAS   
Sbjct: 336 CAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITL 395

Query: 360 --CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
                 C  +  L  G+ +H+ A+K G   D+ V++ ++ MY KCG + +A  VF   + 
Sbjct: 396 ATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISA 455

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
            D  +W  MI G V +G  ++AL  +  M     +PDE TF  ++ A S +  +E+G++ 
Sbjct: 456 PDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQL 515

Query: 478 FSSIKKIYGIT-PTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
            +++ K+  ++ P +     ++D+  + G   +      +  +  N  +W  +L   + H
Sbjct: 516 HANVIKLDCVSDPFVG--TSLVDMYAKCGNIEDAYRLFKKMNVR-NIALWNAMLVGLAQH 572

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
           GN       AE+ + L   M+S+ + P  +S        F G+ +  S  G+  E
Sbjct: 573 GN-------AEEAVNLFKSMKSHGIEPDRVS--------FIGILSACSHAGLTSE 612



 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 136/439 (30%), Positives = 226/439 (51%), Gaps = 12/439 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A+ +F  M E +VV WN +L GY + G  ++   LF        +  +FS+  +L G
Sbjct: 234 MRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNG 293

Query: 61  --FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
             +A +  ++ G+ VH +A++ G   D  ++ SLV+MYSK G A  A +VF  +K  D++
Sbjct: 294 CLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLI 353

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG-------DQRCG 171
           +W ++I+   Q    +E+  +F  +    +KP+ F L S+  AT           DQ  G
Sbjct: 354 SWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQ--G 411

Query: 172 ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY 231
           + IHA   K GF+SD  V + ++ MY++ G +     VF  I+  D V+W ++ S   D 
Sbjct: 412 KQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDN 471

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
            + DQ LRI+++M      P+  TF  ++KA S ++ +  G+QLHA+ IK     +  VG
Sbjct: 472 GNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVG 531

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
           TSLVDMY K G +EDA   F  +  +++  + A++   AQ G AE A+  F+ M+  GI+
Sbjct: 532 TSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIE 591

Query: 352 SNEFTLASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
            +  +    L+ CS     +     LHS+    G   ++   + LV    + G + +A+ 
Sbjct: 592 PDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADK 651

Query: 411 VFKGSALRDTASWNMMIGG 429
           V +    + +AS N  + G
Sbjct: 652 VIETMPFKASASINRALLG 670


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/599 (36%), Positives = 339/599 (56%), Gaps = 6/599 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK---G 60
           A+ +F ++P+ +VVSWNAL + Y  S    + + LF  M     + ++FSLS+++    G
Sbjct: 64  ARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTG 123

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +S     G+ +H   I+LG   D F + +LVDMY+K G+ ++A  VF  I  PD+V+W
Sbjct: 124 LEDS---VQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSW 180

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            AII           A ++   M +S + PN F L+S ++A      +  G  +H+ + K
Sbjct: 181 NAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIK 240

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
               SD+ +G  L+ MY +   +     VF+ +  +D ++WNA+ S     E  ++   +
Sbjct: 241 MDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASL 300

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  M  +G   N  T   +LK+ ++L      +Q+HA ++K   + ++ V  SL+D Y K
Sbjct: 301 FPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGK 360

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +EDA   F+     DL  +T+++T+YAQ G+ E AL+ + +M+  GIK + F  +S 
Sbjct: 361 CGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSL 420

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           LN C+ ++    G+ +H   +K G + D+F   +LV MYAKCGSI+DA   F    +R  
Sbjct: 421 LNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGI 480

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SW+ MIGG  +HG G++AL+ F+ ML  G  P+ IT V VL AC+H GL+ E K +F+S
Sbjct: 481 VSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNS 540

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +K ++GI P  +H+ACMID+LGRAGK       + +     NALVW  LLGA   H NI+
Sbjct: 541 MKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNID 600

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           L E+ AE LL LEP+    +V  ++I A+ G W+  + VR L+    +KKEP  SW+EV
Sbjct: 601 LGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEV 659



 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 151/490 (30%), Positives = 253/490 (51%), Gaps = 2/490 (0%)

Query: 48  KFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALK 107
           K ++F+  +VLK    +  +  G+ VH + +  G   D+F++ SLV +Y+KCG   +A  
Sbjct: 7   KCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARS 66

Query: 108 VFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD 167
           +F  I D  VV+W A+ +C        EA  +F+ M  S ++PN+F L+S++   T   D
Sbjct: 67  LFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLED 126

Query: 168 QRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR 227
              G  IH  + K G++SD    NALV MY + G +   S VF+ IA  D VSWNA+ + 
Sbjct: 127 SVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAG 186

Query: 228 FQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGN 287
              +E   + L +  +M   G  PNM T    LKAC+ ++    G+QLH+  IK  +  +
Sbjct: 187 CVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSD 246

Query: 288 HVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL 347
             +G  L+DMY K   ++DA + F  +  +D+ A+ A+I+ ++Q  E E A   F  M  
Sbjct: 247 SFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHT 306

Query: 348 EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
           EGI  N+ TL++ L   + +      R +H++++K+G   D +V  +L+  Y KCG ++D
Sbjct: 307 EGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVED 366

Query: 408 AEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
           A  VF+ S + D   +  ++  Y + G GE+AL  +  M D G  PD      +L+AC+ 
Sbjct: 367 ATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACAS 426

Query: 468 MGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWE 527
           +   E+GK+    I K +G    I     ++++  + G   +     +   +    + W 
Sbjct: 427 LSAYEQGKQVHVHILK-FGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVR-GIVSWS 484

Query: 528 NLLGACSWHG 537
            ++G  + HG
Sbjct: 485 AMIGGLAQHG 494



 Score =  201 bits (511), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 134/446 (30%), Positives = 220/446 (49%), Gaps = 5/446 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  VF  + + ++VSWNA++ G        + + L   M       + F+LS+ LK 
Sbjct: 162 LEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKA 221

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A     + G+ +H+  I++    D FL   L+DMYSKC   D+A  VF  + + D++AW
Sbjct: 222 CAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAW 281

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I+   Q    +EAA +F LM    +  NQ  L++++++            IHA+  K
Sbjct: 282 NAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLK 341

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GFE D  V N+L+  Y + G V   +RVFE     D V + +L + +      ++ LR+
Sbjct: 342 SGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRL 401

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           + +M  +G KP+      +L AC+SLS    GKQ+H H +K     +   G SLV+MY K
Sbjct: 402 YLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAK 461

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +EDA  AF  +  + + +++A+I   AQ G  + AL+ F++M   G+  N  TL S 
Sbjct: 462 CGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSV 521

Query: 361 LNGCSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA-EAVFKGSALR 418
           L  C+    +A  +   +S+ +  G          ++ +  + G ++ A E V K     
Sbjct: 522 LCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQA 581

Query: 419 DTASWNMMIGGYVKH---GLGEKALE 441
           +   W  ++G    H    LGE+A E
Sbjct: 582 NALVWGALLGAARIHKNIDLGEQAAE 607



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 111/317 (35%), Positives = 170/317 (53%)

Query: 148 VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGS 207
           +K N+F   S+++A T T D   G+ +H ++   GF+SD  V N+LV +Y + G      
Sbjct: 6   IKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDAR 65

Query: 208 RVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLS 267
            +F+AI  +  VSWNALFS +   +   + + +F+ M+L G +PN  +   ++  C+ L 
Sbjct: 66  SLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLE 125

Query: 268 DVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIIT 327
           D   G+++H + IK   D +     +LVDMY K G LEDA   FD +A  D+ ++ AII 
Sbjct: 126 DSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIA 185

Query: 328 SYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL 387
                     AL+  R+M   G+  N FTL+S L  C+ +A    GR LHS  +K     
Sbjct: 186 GCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGS 245

Query: 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML 447
           D F+   L+ MY+KC S+DDA  VFK    RD  +WN +I G+ ++   E+A   F +M 
Sbjct: 246 DSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMH 305

Query: 448 DEGYVPDEITFVVVLSA 464
            EG   ++ T   VL +
Sbjct: 306 TEGIGFNQTTLSTVLKS 322



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 88/241 (36%), Positives = 127/241 (52%)

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M L G K N   F  +LKAC+   D+  GKQ+H   +    D +  V  SLV +Y K G 
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
             DA   FD++ ++ + ++ A+ + Y  +     A+  F  M L GI+ NEF+L+S +N 
Sbjct: 61  FGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINV 120

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +     GR +H   +K G+  D F + ALV MYAK G ++DA +VF   A  D  SW
Sbjct: 121 CTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSW 180

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I G V H    +ALE  R M   G  P+  T    L AC+ M L E G++  SS+ K
Sbjct: 181 NAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIK 240

Query: 484 I 484
           +
Sbjct: 241 M 241


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/643 (34%), Positives = 345/643 (53%), Gaps = 50/643 (7%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
            +A+++     E ++VSW+AL++GY ++G G++ +  +  M  +  K ++F+ S+VLKG 
Sbjct: 99  RVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGC 158

Query: 62  ANSGYIKAGQVVHAMA----------------------------------------IRLG 81
           + +  ++ G+ +H +A                                        I+LG
Sbjct: 159 SLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLG 218

Query: 82  CALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQE-----A 136
              D F + +L+DMY+K G  + A+ VFY I  PD+V+W A+I      GC        A
Sbjct: 219 YDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIA-----GCVLHEKNDLA 273

Query: 137 AKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSM 196
            K+   M    V P+ F L+S ++A    G  + G  +H+ + K   E D+ VG  L+ M
Sbjct: 274 LKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDM 333

Query: 197 YMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTF 256
           Y + G +     VF+ +  +D + WN++ S + +     + + +F  M  +G + N  T 
Sbjct: 334 YSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTL 393

Query: 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
             ILK+ +     GF +Q+H  +IK     +  V  SL+D Y K   LEDA   F+    
Sbjct: 394 STILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPA 453

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL 376
           +DL AYT++IT+Y+Q G  E ALK + +M+   IK + F  +S  N C+ ++    G+ +
Sbjct: 454 EDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQI 513

Query: 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
           H   +K G L D+F   +LV MYAKCGSIDDA  +F   + R   SW+ MIGG  +HG G
Sbjct: 514 HVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHG 573

Query: 437 EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFAC 496
            KAL+ F  ML  G +P+ IT V VLSAC+H GL+ E ++ F  ++K++GITPT +H+AC
Sbjct: 574 RKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYAC 633

Query: 497 MIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKM 556
           M+DILGR G+  E    + E     +A VW  LLGA   H NIEL    AE LL LEP+ 
Sbjct: 634 MVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEK 693

Query: 557 ESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
              ++  ++I A+ G W++ + VR  + +  +KKEP  SWIE+
Sbjct: 694 SGTHILLANIYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIEL 736



 Score =  221 bits (563), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 154/553 (27%), Positives = 262/553 (47%), Gaps = 56/553 (10%)

Query: 57  VLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD 116
           +L  F  S  + +G  +HA   R+       L   LV++YSKC     A K+     +PD
Sbjct: 56  LLLQFTASKDVSSGMAIHA---RIIRLGLLGLRNRLVNLYSKCQCFRVARKLVIDSSEPD 112

Query: 117 VVAWGAIITCLDQQGCCQEAAKIF--------------------------NL-------- 142
           +V+W A+I+   Q G  +EA   +                          NL        
Sbjct: 113 LVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQIHR 172

Query: 143 ------MRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSM 196
                 M  + + PN+F L++++ A     D+  G  +H  + K G++SD    NAL+ M
Sbjct: 173 VALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDM 232

Query: 197 YMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTF 256
           Y ++G       VF  I   D VSWNA+ +    +E  D  L++  +M      P+M T 
Sbjct: 233 YAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTL 292

Query: 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
              LKAC+++  V  G+QLH+  +K  ++ +  VG  L+DMY K G L+DA + FD +  
Sbjct: 293 SSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPX 352

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG--R 374
           KD+  + +II+ Y+  G    A+  F  M  EG++ N+ TL++ L   S   + ANG   
Sbjct: 353 KDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILK--STAGSQANGFCE 410

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
            +H+I++K+G+  D +V+ +L+  Y KC  ++DA  VF+     D  ++  MI  Y ++G
Sbjct: 411 QVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYG 470

Query: 435 LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHF 494
           LGE+AL+ +  M D    PD   F  + +AC+++   E+GK+    + K  G+   +   
Sbjct: 471 LGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKC-GLLSDVFAG 529

Query: 495 ACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEP 554
             ++++  + G   +      E       + W  ++G  + HG+         K L+L  
Sbjct: 530 NSLVNMYAKCGSIDDASCIFNEISWR-GIVSWSAMIGGLAQHGH-------GRKALQLFY 581

Query: 555 KMESNYVFPSDIS 567
           +M  N + P+ I+
Sbjct: 582 QMLKNGILPNHIT 594



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 91/166 (54%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A +VF+  P  ++V++ +++  Y++ G G++ + ++  M+D + K   F  S++   
Sbjct: 441 LEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNA 500

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            AN    + G+ +H   ++ G   D F   SLV+MY+KCG  D+A  +F  I    +V+W
Sbjct: 501 CANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSW 560

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
            A+I  L Q G  ++A ++F  M ++ + PN   L S++ A    G
Sbjct: 561 SAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAG 606


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/634 (32%), Positives = 351/634 (55%), Gaps = 36/634 (5%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF+ M   +VV+W++++  YA +    K    F  M D   + ++ +  ++LK   N
Sbjct: 110 AEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNN 169

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ G+ +H +   +G   D  ++ +L+ MYSKCG    A +VF+++ + +VV+W AI
Sbjct: 170 YSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAI 229

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q     EA +++  M ++ + PN     SL+ +         G  IH+ I + G 
Sbjct: 230 IQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGL 289

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALF-----SRFQDYESPDQGL 238
           E+D +V NAL++MY +   V     +F+ ++ +D +SW+A+      S ++D ES D+  
Sbjct: 290 ETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVF 349

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           ++  +M  +G  PN  TF+ IL+AC++   +  G+Q+HA   K   + +  + T++ +MY
Sbjct: 350 QLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMY 409

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM------------- 345
            K G + +A   F  +ANK++ A+T+ ++ Y + G+   A K F +M             
Sbjct: 410 AKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIA 469

Query: 346 ------------------RLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL 387
                             + EG + +  T+ + L  C  +A L  G+L+H+ AVK G   
Sbjct: 470 GYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLES 529

Query: 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML 447
           D  V+T+L+ MY+KCG + +A  VF   + RDT +WN M+ GY +HG G +A++ F+ ML
Sbjct: 530 DTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRML 589

Query: 448 DEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKF 507
            E   P+EIT   V+SACS  GL++EG++ F  +++ + +TP  +H+ CM+D+LGRAG+ 
Sbjct: 590 KERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRL 649

Query: 508 TEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            E E FI      P+  VW  LLGAC  H N++L E+ A  +LELEP   S Y+  S+I 
Sbjct: 650 QEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILELEPSYASVYITLSNIY 709

Query: 568 ATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           A  GRW+D + VR ++  +G+KK+   S IE+DG
Sbjct: 710 AQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDG 743



 Score =  248 bits (633), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 150/550 (27%), Positives = 258/550 (46%), Gaps = 47/550 (8%)

Query: 57  VLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD 116
           V++  A +   + G++VH     LG  +D +L  SL++ YSK     +A +VF R+   D
Sbjct: 62  VIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRD 121

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
           VV W ++I          +A   F  M +++++PN+    S+++A         G  IH 
Sbjct: 122 VVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHT 181

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
           ++   G E+D  V  AL++MY + G +S    VF  +  ++ VSW A+      +   ++
Sbjct: 182 IVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNE 241

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
              ++ QML  G  PN  TF+ +L +C++   +  G+++H+H  +  L+ + +V  +L+ 
Sbjct: 242 AFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALIT 301

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG-----EAEMALKCFRKMRLEGIK 351
           MY K   +++A   FD ++ +D+ +++A+I  YAQ+G       +   +   +MR EG+ 
Sbjct: 302 MYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVF 361

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            N+ T  S L  C+    L  GR +H+   K G  LD  + TA+  MYAKCGSI +AE V
Sbjct: 362 PNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQV 421

Query: 412 FKGSA-------------------------------LRDTASWNMMIGGYVKHGLGEKAL 440
           F   A                                R+  SWN+MI GY ++G   K  
Sbjct: 422 FSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVF 481

Query: 441 EAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK-KHFSSIKKIYGITPTIKHFACMID 499
           E    M  EG+ PD +T + +L AC  +  +E GK  H  ++K   G+         +I 
Sbjct: 482 ELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVK--LGLESDTVVATSLIG 539

Query: 500 ILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESN 559
           +  + G+  E      +     + + W  +L     HG       D  + ++L  +M   
Sbjct: 540 MYSKCGQVAEARTVFDKMS-NRDTVAWNAMLAGYGQHG-------DGLEAVDLFKRMLKE 591

Query: 560 YVFPSDISAT 569
            V P++I+ T
Sbjct: 592 RVSPNEITLT 601



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 128/499 (25%), Positives = 221/499 (44%), Gaps = 42/499 (8%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + +A  VF  M E NVVSW A++   A+     +   L+  M       +  +  ++L  
Sbjct: 208 ISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNS 267

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 +  G+ +H+     G   D  ++ +L+ MY KC     A ++F R+   DV++W
Sbjct: 268 CNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISW 327

Query: 121 GAIITCLDQQG-----CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH 175
            A+I    Q G        E  ++   MR   V PN+    S++RA T  G    G  IH
Sbjct: 328 SAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIH 387

Query: 176 AVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD 235
           A + K GFE D  +  A+ +MY + G +    +VF  +A+++ V+W +  S +       
Sbjct: 388 AELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLS 447

Query: 236 QGLRIFYQMLLK-------------------------------GFKPNMCTFIVILKACS 264
              ++F +M  +                               GF+P+  T I IL+AC 
Sbjct: 448 SAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACG 507

Query: 265 SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA 324
           +L+ +  GK +HA  +K  L+ + VV TSL+ MY K G + +A   FD ++N+D  A+ A
Sbjct: 508 ALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNA 567

Query: 325 IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           ++  Y Q G+   A+  F++M  E +  NE TL + ++ CS    +  GR +  +  +  
Sbjct: 568 MLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDF 627

Query: 385 HLLDMFVSTA-LVAMYAKCGSIDDAEAVFKGSALR-DTASWNMMIGGYVKHG---LGEKA 439
            +         +V +  + G + +AE   +      D + W+ ++G    H    L E+A
Sbjct: 628 KMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERA 687

Query: 440 LEAFRMMLDEGYVPDEITF 458
                + L+  Y    IT 
Sbjct: 688 AHHI-LELEPSYASVYITL 705



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 113/421 (26%), Positives = 208/421 (49%), Gaps = 8/421 (1%)

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
           P  V+ G +   L + G  +EA ++  ++++  +  N      ++    +      G+ +
Sbjct: 20  PTSVSGGEVWR-LCKAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMV 78

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H  + + G E D  +GN+L++ Y +   V+   +VF  +  +D V+W+++ + +     P
Sbjct: 79  HKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHP 138

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
            +    F +M     +PN  TF+ ILKAC++ S +  G+++H       ++ +  V T+L
Sbjct: 139 AKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATAL 198

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           + MY K G +  A   F  +  +++ ++TAII + AQ  +   A + + +M   GI  N 
Sbjct: 199 ITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNA 258

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            T  S LN C+    L  GR +HS   + G   DM V+ AL+ MY KC S+ +A  +F  
Sbjct: 259 VTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDR 318

Query: 415 SALRDTASWNMMIGGYVKHGLGEKAL--EAFRM---MLDEGYVPDEITFVVVLSACSHMG 469
            + RD  SW+ MI GY + G  +K    E F++   M  EG  P+++TF+ +L AC+  G
Sbjct: 319 MSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHG 378

Query: 470 LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENL 529
            +E+G++  + + K+ G          + ++  + G   E E   ++     N + W + 
Sbjct: 379 ALEQGRQIHAELSKV-GFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMA-NKNVVAWTSF 436

Query: 530 L 530
           L
Sbjct: 437 L 437


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/600 (35%), Positives = 332/600 (55%), Gaps = 1/600 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +++A+RVF  M + + VSW  ++ GYA +G   +V+ LF  MK    + +K S  +    
Sbjct: 279 VDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLA 338

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A +  ++ G+ +H  A++     D  ++  L+ MY+KCG  + A ++F+ ++  D+VAW
Sbjct: 339 AAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAW 398

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            AII  L Q G  +EA  +F  M+   +KPN+  L S++ A  +    + G+SIH    K
Sbjct: 399 SAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVK 458

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              +SD   G ALVSMY + G  +     F  ++ +D V+WN+L + +     P   + +
Sbjct: 459 ADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDM 518

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           FY++ L    P+  T + ++ AC+ L+D+  G  +H   +K   + +  V  +L+DMY K
Sbjct: 519 FYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAK 578

Query: 301 SGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
            G L  A   F+     KD   +  II +Y Q G A+ A+  F +MRLE    N  T  S
Sbjct: 579 CGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVS 638

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L   + +A    G   H+  ++ G L +  V  +L+ MYAKCG +D +E +F     +D
Sbjct: 639 VLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKD 698

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
           T SWN M+ GY  HG G++A+  F +M +     D ++FV VLSAC H GL+EEG+K F 
Sbjct: 699 TVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFH 758

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           S+   Y I P ++H+ACM+D+LGRAG F E   FI    + P+A VW  LLG+C  H N+
Sbjct: 759 SMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNV 818

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +L E   + L++LEP+  +++V  S I A  GRW D    R+ ++  G+KK P CSW+E+
Sbjct: 819 KLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVEL 878



 Score =  281 bits (719), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 163/539 (30%), Positives = 279/539 (51%), Gaps = 5/539 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+ VF  MP+ +VV+WNA++ G ++S D  + +  F SM+ +  + S  SL  +  G
Sbjct: 180 LKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPG 239

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 I+  + +H    R        +S  L+D+YSKCG  D A +VF ++ D D V+W
Sbjct: 240 ICKLSNIELCRSIHGYVFRRD--FSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSW 297

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
           G ++      GC  E  ++F+ M+  +V+ N+    S   A  ET D   G+ IH    +
Sbjct: 298 GTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQ 357

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              +SD LV   L+ MY + G      ++F  +  +D V+W+A+ +       P++ L +
Sbjct: 358 QRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSL 417

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M  +  KPN  T + IL AC+ LS +  GK +H  T+K  +D +   GT+LV MY K
Sbjct: 418 FQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAK 477

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G    A   F+ ++++D+  + ++I  YAQ G+   A+  F K+RL  I  +  T+   
Sbjct: 478 CGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGV 537

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF-KGSALRD 419
           +  C+ +  L  G  +H + VK G   D  V  AL+ MYAKCGS+  AE +F K    +D
Sbjct: 538 VPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKD 597

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             +WN++I  Y+++G  ++A+ +F  M  E + P+ +TFV VL A +++    EG    +
Sbjct: 598 EVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHA 657

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            I ++  ++ T+   + +ID+  + G+    E    E     + + W  +L   + HG+
Sbjct: 658 CIIQMGFLSNTLVGNS-LIDMYAKCGQLDYSEKLFNEMD-HKDTVSWNAMLSGYAVHGH 714



 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 158/537 (29%), Positives = 254/537 (47%), Gaps = 3/537 (0%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           +LA+ VF S P  + + WN+++  Y  S    + + ++  M +   +  K++ + VLK  
Sbjct: 80  DLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKAC 139

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
             +  ++ G   H    R G   D F+   LVDMYSK G    A +VF ++   DVVAW 
Sbjct: 140 TGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWN 199

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           A+I  L Q     EA   F  M+   V+P+   L +L     +  +     SIH  + + 
Sbjct: 200 AMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRR 259

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
            F S   V N L+ +Y + G V    RVF+ +  QD VSW  + + +       + L +F
Sbjct: 260 DFSS--AVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELF 317

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M L   + N  + +    A +   D+  GK++H   ++  +D + +V T L+ MY K 
Sbjct: 318 DKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKC 377

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G  E A   F  L  +DL A++AII +  Q G  E AL  F++M+ + +K N  TL S L
Sbjct: 378 GETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSIL 437

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
             C+ ++ L  G+ +H   VK     D+   TALV+MYAKCG    A   F   + RD  
Sbjct: 438 PACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIV 497

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           +WN +I GY + G    A++ F  +      PD  T V V+ AC+ +  +++G      I
Sbjct: 498 TWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLI 557

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            K+ G          +ID+  + G     E    +T  T + + W  ++ A   +G+
Sbjct: 558 VKL-GFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGH 613



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 193/384 (50%), Gaps = 2/384 (0%)

Query: 92  LVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPN 151
           L+++YS     D A  VF    +P  + W ++I    +     EA +++  M E  ++P+
Sbjct: 69  LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPD 128

Query: 152 QFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFE 211
           ++  T +++A T   + + G   H  I + G E D  +G  LV MY + G +     VF+
Sbjct: 129 KYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFD 188

Query: 212 AIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGF 271
            +  +D V+WNA+ +     E P + +  F  M L G +P+  + + +      LS++  
Sbjct: 189 KMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIEL 248

Query: 272 GKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQ 331
            + +H +  +   D +  V   L+D+Y K G ++ A   FD + ++D  ++  ++  YA 
Sbjct: 249 CRSIHGYVFRR--DFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAH 306

Query: 332 AGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFV 391
            G     L+ F KM+L  ++ N+ +  S     +    L  G+ +H  A++     D+ V
Sbjct: 307 NGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILV 366

Query: 392 STALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGY 451
           +T L+ MYAKCG  + A+ +F G   RD  +W+ +I   V+ G  E+AL  F+ M ++  
Sbjct: 367 ATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKM 426

Query: 452 VPDEITFVVVLSACSHMGLIEEGK 475
            P+ +T + +L AC+ + L++ GK
Sbjct: 427 KPNRVTLMSILPACADLSLLKLGK 450



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 148/303 (48%), Gaps = 3/303 (0%)

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           IHA I   GF+    + + L+++Y    +      VF++  +   + WN++   +   + 
Sbjct: 51  IHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQ 109

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
            ++ L ++Y M+ KG +P+  TF  +LKAC+   ++  G   H    +  L+ +  +G  
Sbjct: 110 YNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAG 169

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           LVDMY K G L+ A   FD +  +D+ A+ A+I   +Q+ +   A+  FR M+L G++ +
Sbjct: 170 LVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPS 229

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
             +L +   G   ++ +   R +H    +        VS  L+ +Y+KCG +D A  VF 
Sbjct: 230 SVSLLNLFPGICKLSNIELCRSIHGYVFRRD--FSSAVSNGLIDLYSKCGDVDVARRVFD 287

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
               +D  SW  M+ GY  +G   + LE F  M       ++++ V    A +    +E+
Sbjct: 288 QMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEK 347

Query: 474 GKK 476
           GK+
Sbjct: 348 GKE 350


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/591 (34%), Positives = 336/591 (56%)

Query: 11  MPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAG 70
           MP+ N VS+  L+ GY +S    +V+ LF  +     + + F  +T+LK   +    +  
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 71  QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
             +HA   +LG   + F+  +L+D Y+ CG  ++A + F  I   D+V+W  ++ C  + 
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 131 GCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVG 190
              Q++ ++F  MR     PN F    +++A         G+S+H  + K  +E D  VG
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVG 180

Query: 191 NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFK 250
             L+ +Y + G  +   RVFE +   D + W+ + SR+       + + +F QM      
Sbjct: 181 VGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVL 240

Query: 251 PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVA 310
           PN  TF  +L++C+S+ ++  GKQ+H H +K  LDGN  V  +L+D+Y K G L+++   
Sbjct: 241 PNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKL 300

Query: 311 FDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATL 370
           F  L N++   +  +I  Y Q+G+ + AL  ++ M    ++++E T +S L  C+ +A +
Sbjct: 301 FMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAM 360

Query: 371 ANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGY 430
             G  +HS+++KT +  D+ V  AL+ MYAKCGSI +A  VF   + RD  SWN MI GY
Sbjct: 361 ELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGY 420

Query: 431 VKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT 490
             HGL  +AL+AF+MM +   VP+++TFV +LSACS+ GL++ G+ +F S+ + YGI P 
Sbjct: 421 SMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPC 480

Query: 491 IKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLL 550
           ++H+ CM+ +LGR+G   +    I E  L PN  VW  LLGAC  H +++L    A+++L
Sbjct: 481 MEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQIL 540

Query: 551 ELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           +++P+ E+ +V  S+I A   RWN  + VR  + ++G+KKEP  SWIE  G
Sbjct: 541 QIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQG 591



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 119/433 (27%), Positives = 222/433 (51%), Gaps = 2/433 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++ F ++   ++VSW  ++  YAE+   Q  + LF  M+ +    + F+ + VLK    
Sbjct: 95  ARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIG 154

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G+ VH   ++    +D ++   L+D+Y+K G A++ L+VF  +   DV+ W  +
Sbjct: 155 LEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFM 214

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   Q    +EA ++F  MR + V PNQF   S++++     + + G+ +H  + K G 
Sbjct: 215 ISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGL 274

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           + +  V NAL+ +Y + GR+    ++F  + +++ V+WN +   +      D+ L ++  
Sbjct: 275 DGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKN 334

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           ML    + +  T+  +L+AC+SL+ +  G Q+H+ ++K   D + VVG +L+DMY K G 
Sbjct: 335 MLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGS 394

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +++A + FD L+ +D  ++ A+I+ Y+  G    ALK F+ M+      N+ T  S L+ 
Sbjct: 395 IKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSA 454

Query: 364 CSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DTA 421
           CS    L  G+    S+    G    M   T +V +  + G +D A  + +   L  +  
Sbjct: 455 CSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVK 514

Query: 422 SWNMMIGGYVKHG 434
            W  ++G  V H 
Sbjct: 515 VWRALLGACVIHN 527



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 125/242 (51%), Gaps = 2/242 (0%)

Query: 6   RVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSG 65
           ++F  +P  N V+WN ++ GY +SGDG K + L+ +M + + + S+ + S+VL+  A+  
Sbjct: 299 KLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLA 358

Query: 66  YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT 125
            ++ G  +H+++++     D  +  +L+DMY+KCG   NA  VF  + + D ++W A+I+
Sbjct: 359 AMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMIS 418

Query: 126 CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES-IHAVICKYGFE 184
                G   EA K F +M+E+   PN+    S++ A +  G    G++   +++  YG E
Sbjct: 419 GYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIE 478

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS-WNALFSRFQDYESPDQGLRIFYQ 243
                   +V +   +G +    ++ E I  + +V  W AL      +   D G+    Q
Sbjct: 479 PCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQ 538

Query: 244 ML 245
           +L
Sbjct: 539 IL 540


>gi|359476188|ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Vitis vinifera]
          Length = 829

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/602 (35%), Positives = 343/602 (56%), Gaps = 3/602 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + +A ++F    + + VSWN ++ G+   G+ +  +    SMK        +S  ++LKG
Sbjct: 50  IRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKG 109

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A  GY++ GQ VH+M +++G   + F   +L+DMY+KC   ++A +VF  I   + V W
Sbjct: 110 VACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTW 169

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I+   Q G    A  + + M    V+ +      L+    +    +    +HA I K
Sbjct: 170 NALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVK 229

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFE-AIAHQDSVSWNALFSRFQDYESPDQGLR 239
           +G  SDT V NA+++ Y E G +    RVF+ AI  +D V+WN++ + +      ++  +
Sbjct: 230 HGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLVTWNSMLAAYLVNNQEEEAFQ 289

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F +M + GF+P++ T+  ++ A    S  G GK LH   IK  L+    +  SL+ MY 
Sbjct: 290 LFLEMQVLGFEPDIYTYTSVISAAFEGSHQGQGKSLHGLVIKRGLEFLVPISNSLIAMYL 349

Query: 300 KS--GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           KS    +++A   F+SL NKD  ++ +I+T ++Q+G +E ALK F  MR + +  + +  
Sbjct: 350 KSHSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAF 409

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           ++ L  CS +ATL  G+ +H + +K+G   + FV+++L+ MY+KCG I+DA   F  +  
Sbjct: 410 SAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPK 469

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
             + +WN +I GY +HG G+ AL+ F +M D     D ITFV VL+ACSH+GL+EEG   
Sbjct: 470 DSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSF 529

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
             S++  YGI P ++H+ACMID+LGRAG+  E +  I      P+A+VW+ LLGAC   G
Sbjct: 530 LKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCG 589

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           +IEL  + A  LLELEP+    YV  S +     RWN+ + ++ L+  +G+KK P  SWI
Sbjct: 590 DIELASQVASHLLELEPEEHCTYVLLSSMFGHLRRWNEKASIKRLMKERGVKKVPGWSWI 649

Query: 598 EV 599
           EV
Sbjct: 650 EV 651



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 125/479 (26%), Positives = 228/479 (47%), Gaps = 13/479 (2%)

Query: 72  VVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQG 131
           V H +AI+ G     + + +++  Y+KCG    A K+F      D V+W  +I      G
Sbjct: 20  VNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLG 79

Query: 132 CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGN 191
             + A +    M+      + +   S+++     G    G+ +H+++ K G+E +   G+
Sbjct: 80  NFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGS 139

Query: 192 ALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKP 251
           AL+ MY +  RV     VF++I  ++SV+WNAL S +           +   M L+G + 
Sbjct: 140 ALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEI 199

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF 311
           +  TF  +L             Q+HA  +KH L  +  V  +++  Y + G +EDA   F
Sbjct: 200 DDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVF 259

Query: 312 D-SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATL 370
           D ++  +DL  + +++ +Y    + E A + F +M++ G + + +T  S ++     +  
Sbjct: 260 DGAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSHQ 319

Query: 371 ANGRLLHSIAVKTGHLLDMFVSTALVAMYAK--CGSIDDAEAVFKGSALRDTASWNMMIG 428
             G+ LH + +K G    + +S +L+AMY K    S+D+A  +F+    +D  SWN ++ 
Sbjct: 320 GQGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILT 379

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGI 487
           G+ + GL E AL+ F  M  +  V D   F  VL +CS +  ++ G++ H   +K   G 
Sbjct: 380 GFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKS--GF 437

Query: 488 TPTIKHFACMIDILGRAGKFTEIENFITETKLTP--NALVWENLLGACSWHGN--IELD 542
            P     + +I +  + G    IE+       TP  +++ W +L+   + HG   I LD
Sbjct: 438 EPNGFVASSLIFMYSKCGV---IEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALD 493



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 121/416 (29%), Positives = 192/416 (46%), Gaps = 26/416 (6%)

Query: 151 NQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF 210
           +Q   T+L RA+            H +  K G  +     N ++S Y + G +   S++F
Sbjct: 8   SQSSFTALYRASVN----------HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMF 57

Query: 211 EAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVG 270
              + +D+VSWN + + F +  + +  L     M   GF  +  +F  ILK  + +  V 
Sbjct: 58  GETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVE 117

Query: 271 FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
            G+Q+H+  +K   +GN   G++L+DMY K   +EDA   F S+  ++   + A+I+ YA
Sbjct: 118 VGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYA 177

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
           Q G+   A      M LEG++ ++ T A  L              +H+  VK G   D  
Sbjct: 178 QVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTT 237

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGS-ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDE 449
           V  A++  Y++CGSI+DAE VF G+   RD  +WN M+  Y+ +   E+A + F  M   
Sbjct: 238 VCNAIITAYSECGSIEDAERVFDGAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVL 297

Query: 450 GYVPDEITFVVVLSAC---SHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAG 505
           G+ PD  T+  V+SA    SH G   +GK  H   IK+       I +    + +   + 
Sbjct: 298 GFEPDIYTYTSVISAAFEGSHQG---QGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSK 354

Query: 506 KFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYV 561
              E  N I E+    + + W ++L   S  G  E    DA K  E    M S YV
Sbjct: 355 SMDEALN-IFESLENKDHVSWNSILTGFSQSGLSE----DALKFFE---NMRSQYV 402


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/598 (34%), Positives = 335/598 (56%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
            LA+RVF  MP  + V++N L++G+A+ G G+  + +F  M+         ++S++L   
Sbjct: 195 RLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAAC 254

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           A+ G ++ G  +H+   + G + D  +  SL+D+Y KCG  + AL +F      +VV W 
Sbjct: 255 ASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWN 314

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            ++    Q     ++ ++F  M+ + ++PNQF    ++R  T T +   GE IH++  K 
Sbjct: 315 LMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKT 374

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           GFESD  V   L+ MY + G +    RV E +  +D VSW ++ + +  +E     L  F
Sbjct: 375 GFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAF 434

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M   G  P+       +  C+ ++ +  G Q+HA        G+  +  +LV++Y + 
Sbjct: 435 KEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARC 494

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G + +A  +F+ + +KD   +  +++ +AQ+G  E ALK F +M   G+K N FT  S L
Sbjct: 495 GRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSAL 554

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           +  + +A +  G+ +H+  +KTGH  +  V  AL+++Y KCGS +DA+  F   + R+  
Sbjct: 555 SASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEV 614

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SWN +I    +HG G +AL+ F  M  EG  P+++TF+ VL+ACSH+GL+EEG  +F S+
Sbjct: 615 SWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSM 674

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
              YGI P   H+AC+IDI GRAG+    + FI E  +  +A+VW  LL AC  H NIE+
Sbjct: 675 SDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEV 734

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            E  A+ LLELEP   ++YV  S+  A   +W +   VR ++  +G++KEP  SWIEV
Sbjct: 735 GEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEV 792



 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 165/589 (28%), Positives = 301/589 (51%), Gaps = 19/589 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+RVF+ +   + VSW A+L+GYA++G G++ + L+  M       + + LS+VL     
Sbjct: 96  ARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTK 155

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +     G+++HA   + G   + F+  +++ +Y +CG    A +VF  +   D V +  +
Sbjct: 156 AELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTL 215

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   Q G  + A +IF  M+ S + P+   ++SL+ A    GD + G  +H+ + K G 
Sbjct: 216 ISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGI 275

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            SD ++  +L+ +Y++ G V     +F +    + V WN +   F       +   +F Q
Sbjct: 276 SSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQ 335

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G +PN  T+  IL+ C+   ++  G+Q+H+ ++K   + +  V   L+DMY K G 
Sbjct: 336 MQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGW 395

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           LE A    + L  KD+ ++T++I  Y Q    + AL  F++M+  GI  +   LAS ++G
Sbjct: 396 LEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISG 455

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +  +  G  +H+    +G+  D+ +  ALV +YA+CG I +A + F+    +D  +W
Sbjct: 456 CAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITW 515

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK 482
           N ++ G+ + GL E+AL+ F  M   G   +  TFV  LSA +++  I++GK+ H   IK
Sbjct: 516 NGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIK 575

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
             +     + +   +I + G+ G F + +   +E     N + W  ++ +CS HG     
Sbjct: 576 TGHSFETEVGN--ALISLYGKCGSFEDAKMEFSEMS-ERNEVSWNTIITSCSQHGR---- 628

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
                + L+L  +M+   + P+D++        F GV A  S  G+ +E
Sbjct: 629 ---GLEALDLFDQMKKEGIKPNDVT--------FIGVLAACSHVGLVEE 666



 Score =  244 bits (623), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 154/522 (29%), Positives = 259/522 (49%), Gaps = 10/522 (1%)

Query: 11  MPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAG 70
           M      S    L G+    D  KV+ LF               +  L+    +G  +  
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNG--RRW 58

Query: 71  QVV---HAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127
           QVV   HA A+  G    + +   L+D+YSK GL   A +VF  +   D V+W A+++  
Sbjct: 59  QVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGY 118

Query: 128 DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDT 187
            Q G  +EA  ++  M  + V P  +VL+S++ + T+      G  IHA   K+GF S+ 
Sbjct: 119 AQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEI 178

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK 247
            VGNA++++Y+  G      RVF  + H+D+V++N L S        +  L IF +M   
Sbjct: 179 FVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFS 238

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           G  P+  T   +L AC+SL D+  G QLH++  K  +  ++++  SL+D+Y K G +E A
Sbjct: 239 GLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETA 298

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367
            V F+S    ++  +  ++ ++ Q  +   + + F +M+  GI+ N+FT    L  C+  
Sbjct: 299 LVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCT 358

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
             +  G  +HS++VKTG   DM+VS  L+ MY+K G ++ A  V +    +D  SW  MI
Sbjct: 359 REIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMI 418

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGI 487
            GYV+H   + AL AF+ M   G  PD I     +S C+ +  + +G +  + I  + G 
Sbjct: 419 AGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARI-YVSGY 477

Query: 488 TPTIKHFACMIDILGRAGK----FTEIENFITETKLTPNALV 525
           +  +  +  ++++  R G+    F+  E    + ++T N LV
Sbjct: 478 SGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLV 519



 Score =  221 bits (563), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 122/373 (32%), Positives = 195/373 (52%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  +F S    NVV WN +L  + +  D  K   LFC M+    + ++F+   +L+ 
Sbjct: 295 VETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRT 354

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              +  I  G+ +H+++++ G   D ++S  L+DMYSK G  + A +V   +K+ DVV+W
Sbjct: 355 CTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSW 414

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I    Q  CC++A   F  M++  + P+   L S +         R G  IHA I  
Sbjct: 415 TSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYV 474

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G+  D  + NALV++Y   GR+      FE I H+D ++WN L S F      ++ L++
Sbjct: 475 SGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKV 534

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M   G K N+ TF+  L A ++L+++  GKQ+HA  IK        VG +L+ +Y K
Sbjct: 535 FMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGK 594

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G  EDA + F  ++ ++  ++  IITS +Q G    AL  F +M+ EGIK N+ T    
Sbjct: 595 CGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGV 654

Query: 361 LNGCSPVATLANG 373
           L  CS V  +  G
Sbjct: 655 LAACSHVGLVEEG 667


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/598 (34%), Positives = 335/598 (56%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
            LA+RVF  MP  + V++N L++G+A+ G G+  + +F  M+         ++S++L   
Sbjct: 195 RLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAAC 254

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           A+ G ++ G  +H+   + G + D  +  SL+D+Y KCG  + AL +F      +VV W 
Sbjct: 255 ASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWN 314

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            ++    Q     ++ ++F  M+ + ++PNQF    ++R  T T +   GE IH++  K 
Sbjct: 315 LMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKT 374

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           GFESD  V   L+ MY + G +    RV E +  +D VSW ++ + +  +E     L  F
Sbjct: 375 GFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAF 434

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M   G  P+       +  C+ ++ +  G Q+HA        G+  +  +LV++Y + 
Sbjct: 435 KEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARC 494

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G + +A  +F+ + +KD   +  +++ +AQ+G  E ALK F +M   G+K N FT  S L
Sbjct: 495 GRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSAL 554

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           +  + +A +  G+ +H+  +KTGH  +  V  AL+++Y KCGS +DA+  F   + R+  
Sbjct: 555 SASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEV 614

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SWN +I    +HG G +AL+ F  M  EG  P+++TF+ VL+ACSH+GL+EEG  +F S+
Sbjct: 615 SWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSM 674

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
              YGI P   H+AC+IDI GRAG+    + FI E  +  +A+VW  LL AC  H NIE+
Sbjct: 675 SDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEV 734

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            E  A+ LLELEP   ++YV  S+  A   +W +   VR ++  +G++KEP  SWIEV
Sbjct: 735 GEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEV 792



 Score =  262 bits (669), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 165/589 (28%), Positives = 301/589 (51%), Gaps = 19/589 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+RVF+ +   + VSW A+L+GYA++G G++ + L+  M       + + LS+VL     
Sbjct: 96  ARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTK 155

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +     G+++HA   + G   + F+  +++ +Y +CG    A +VF  +   D V +  +
Sbjct: 156 AELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTL 215

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   Q G  + A +IF  M+ S + P+   ++SL+ A    GD + G  +H+ + K G 
Sbjct: 216 ISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGI 275

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            SD ++  +L+ +Y++ G V     +F +    + V WN +   F       +   +F Q
Sbjct: 276 SSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQ 335

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G +PN  T+  IL+ C+   ++  G+Q+H+ ++K   + +  V   L+DMY K G 
Sbjct: 336 MQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGW 395

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           LE A    + L  KD+ ++T++I  Y Q    + AL  F++M+  GI  +   LAS ++G
Sbjct: 396 LEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISG 455

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +  +  G  +H+    +G+  D+ +  ALV +YA+CG I +A + F+    +D  +W
Sbjct: 456 CAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITW 515

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK 482
           N ++ G+ + GL E+AL+ F  M   G   +  TFV  LSA +++  I++GK+ H   IK
Sbjct: 516 NGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIK 575

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
             +     + +   +I + G+ G F + +   +E     N + W  ++ +CS HG     
Sbjct: 576 TGHSFETEVGN--ALISLYGKCGSFEDAKMEFSEMS-ERNEVSWNTIITSCSQHGR---- 628

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
                + L+L  +M+   + P+D++        F GV A  S  G+ +E
Sbjct: 629 ---GLEALDLFDQMKKEGIKPNDVT--------FIGVLAACSHVGLVEE 666



 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 154/522 (29%), Positives = 259/522 (49%), Gaps = 10/522 (1%)

Query: 11  MPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAG 70
           M      S    L G+    D  KV+ LF               +  L+    +G  +  
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNG--RRW 58

Query: 71  QVV---HAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127
           QVV   HA A+  G    + +   L+D+YSK GL   A +VF  +   D V+W A+++  
Sbjct: 59  QVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGY 118

Query: 128 DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDT 187
            Q G  +EA  ++  M  + V P  +VL+S++ + T+      G  IHA   K+GF S+ 
Sbjct: 119 AQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEI 178

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK 247
            VGNA++++Y+  G      RVF  + H+D+V++N L S        +  L IF +M   
Sbjct: 179 FVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFS 238

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           G  P+  T   +L AC+SL D+  G QLH++  K  +  ++++  SL+D+Y K G +E A
Sbjct: 239 GLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETA 298

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367
            V F+S    ++  +  ++ ++ Q  +   + + F +M+  GI+ N+FT    L  C+  
Sbjct: 299 LVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCT 358

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
             +  G  +HS++VKTG   DM+VS  L+ MY+K G ++ A  V +    +D  SW  MI
Sbjct: 359 REIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMI 418

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGI 487
            GYV+H   + AL AF+ M   G  PD I     +S C+ +  + +G +  + I  + G 
Sbjct: 419 AGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARI-YVSGY 477

Query: 488 TPTIKHFACMIDILGRAGK----FTEIENFITETKLTPNALV 525
           +  +  +  ++++  R G+    F+  E    + ++T N LV
Sbjct: 478 SGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLV 519



 Score =  221 bits (563), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 122/373 (32%), Positives = 195/373 (52%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  +F S    NVV WN +L  + +  D  K   LFC M+    + ++F+   +L+ 
Sbjct: 295 VETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRT 354

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              +  I  G+ +H+++++ G   D ++S  L+DMYSK G  + A +V   +K+ DVV+W
Sbjct: 355 CTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSW 414

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I    Q  CC++A   F  M++  + P+   L S +         R G  IHA I  
Sbjct: 415 TSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYV 474

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G+  D  + NALV++Y   GR+      FE I H+D ++WN L S F      ++ L++
Sbjct: 475 SGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKV 534

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M   G K N+ TF+  L A ++L+++  GKQ+HA  IK        VG +L+ +Y K
Sbjct: 535 FMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGK 594

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G  EDA + F  ++ ++  ++  IITS +Q G    AL  F +M+ EGIK N+ T    
Sbjct: 595 CGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGV 654

Query: 361 LNGCSPVATLANG 373
           L  CS V  +  G
Sbjct: 655 LAACSHVGLVEEG 667


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/600 (35%), Positives = 331/600 (55%), Gaps = 1/600 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +++A+RVF  M + + VSW  ++ GYA +G   +V+ LF  MK    + +K S  +    
Sbjct: 279 VDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLA 338

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A +  ++ G+ +H  A++     D  ++  L+ MY+KCG  + A ++F+ ++  D+VAW
Sbjct: 339 AAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAW 398

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            AII  L Q G  +EA  +F  M+   +KPN+  L S++ A  +    + G+SIH    K
Sbjct: 399 SAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVK 458

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              +SD   G ALVSMY + G  +     F  ++ +D V+WN+L + +     P   + +
Sbjct: 459 ADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDM 518

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           FY++ L    P+  T + ++ AC+ L+D+  G  +H   +K   + +  V  +L+DMY K
Sbjct: 519 FYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAK 578

Query: 301 SGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
            G L  A   F+     KD   +  II +Y Q G A+ A+  F +MRLE    N  T  S
Sbjct: 579 CGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVS 638

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L   + +A    G   H+  ++ G L +  V  +L+ MYAKCG +  +E +F     +D
Sbjct: 639 VLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKD 698

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
           T SWN M+ GY  HG G++A+  F +M +     D ++FV VLSAC H GL+EEG+K F 
Sbjct: 699 TVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFH 758

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           S+   Y I P ++H+ACM+D+LGRAG F E   FI    + P+A VW  LLG+C  H N+
Sbjct: 759 SMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNV 818

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +L E   + L++LEP+  +++V  S I A  GRW D    R+ ++  G+KK P CSW+E+
Sbjct: 819 KLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVEL 878



 Score =  281 bits (719), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 163/539 (30%), Positives = 279/539 (51%), Gaps = 5/539 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+ VF  MP+ +VV+WNA++ G ++S D  + +  F SM+ +  + S  SL  +  G
Sbjct: 180 LKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPG 239

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 I+  + +H    R        +S  L+D+YSKCG  D A +VF ++ D D V+W
Sbjct: 240 ICKLSNIELCRSIHGYVFRRD--FSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSW 297

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
           G ++      GC  E  ++F+ M+  +V+ N+    S   A  ET D   G+ IH    +
Sbjct: 298 GTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQ 357

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              +SD LV   L+ MY + G      ++F  +  +D V+W+A+ +       P++ L +
Sbjct: 358 QRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSL 417

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M  +  KPN  T + IL AC+ LS +  GK +H  T+K  +D +   GT+LV MY K
Sbjct: 418 FQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAK 477

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G    A   F+ ++++D+  + ++I  YAQ G+   A+  F K+RL  I  +  T+   
Sbjct: 478 CGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGV 537

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF-KGSALRD 419
           +  C+ +  L  G  +H + VK G   D  V  AL+ MYAKCGS+  AE +F K    +D
Sbjct: 538 VPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKD 597

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             +WN++I  Y+++G  ++A+ +F  M  E + P+ +TFV VL A +++    EG    +
Sbjct: 598 EVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHA 657

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            I ++  ++ T+   + +ID+  + G+    E    E     + + W  +L   + HG+
Sbjct: 658 CIIQMGFLSNTLVGNS-LIDMYAKCGQLXYSEKLFNEMD-HKDTVSWNAMLSGYAVHGH 714



 Score =  240 bits (613), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 158/537 (29%), Positives = 254/537 (47%), Gaps = 3/537 (0%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           +LA+ VF S P  + + WN+++  Y  S    + + ++  M +   +  K++ + VLK  
Sbjct: 80  DLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKAC 139

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
             +  ++ G   H    R G   D F+   LVDMYSK G    A +VF ++   DVVAW 
Sbjct: 140 TGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWN 199

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           A+I  L Q     EA   F  M+   V+P+   L +L     +  +     SIH  + + 
Sbjct: 200 AMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRR 259

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
            F S   V N L+ +Y + G V    RVF+ +  QD VSW  + + +       + L +F
Sbjct: 260 DFSS--AVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELF 317

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M L   + N  + +    A +   D+  GK++H   ++  +D + +V T L+ MY K 
Sbjct: 318 DKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKC 377

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G  E A   F  L  +DL A++AII +  Q G  E AL  F++M+ + +K N  TL S L
Sbjct: 378 GETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSIL 437

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
             C+ ++ L  G+ +H   VK     D+   TALV+MYAKCG    A   F   + RD  
Sbjct: 438 PACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIV 497

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           +WN +I GY + G    A++ F  +      PD  T V V+ AC+ +  +++G      I
Sbjct: 498 TWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLI 557

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            K+ G          +ID+  + G     E    +T  T + + W  ++ A   +G+
Sbjct: 558 VKL-GFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGH 613



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 193/384 (50%), Gaps = 2/384 (0%)

Query: 92  LVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPN 151
           L+++YS     D A  VF    +P  + W ++I    +     EA +++  M E  ++P+
Sbjct: 69  LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPD 128

Query: 152 QFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFE 211
           ++  T +++A T   + + G   H  I + G E D  +G  LV MY + G +     VF+
Sbjct: 129 KYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFD 188

Query: 212 AIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGF 271
            +  +D V+WNA+ +     E P + +  F  M L G +P+  + + +      LS++  
Sbjct: 189 KMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIEL 248

Query: 272 GKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQ 331
            + +H +  +   D +  V   L+D+Y K G ++ A   FD + ++D  ++  ++  YA 
Sbjct: 249 CRSIHGYVFRR--DFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAH 306

Query: 332 AGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFV 391
            G     L+ F KM+L  ++ N+ +  S     +    L  G+ +H  A++     D+ V
Sbjct: 307 NGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILV 366

Query: 392 STALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGY 451
           +T L+ MYAKCG  + A+ +F G   RD  +W+ +I   V+ G  E+AL  F+ M ++  
Sbjct: 367 ATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKM 426

Query: 452 VPDEITFVVVLSACSHMGLIEEGK 475
            P+ +T + +L AC+ + L++ GK
Sbjct: 427 KPNRVTLMSILPACADLSLLKLGK 450



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 148/303 (48%), Gaps = 3/303 (0%)

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           IHA I   GF+    + + L+++Y    +      VF++  +   + WN++   +   + 
Sbjct: 51  IHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQ 109

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
            ++ L ++Y M+ KG +P+  TF  +LKAC+   ++  G   H    +  L+ +  +G  
Sbjct: 110 YNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAG 169

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           LVDMY K G L+ A   FD +  +D+ A+ A+I   +Q+ +   A+  FR M+L G++ +
Sbjct: 170 LVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPS 229

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
             +L +   G   ++ +   R +H    +        VS  L+ +Y+KCG +D A  VF 
Sbjct: 230 SVSLLNLFPGICKLSNIELCRSIHGYVFRRD--FSSAVSNGLIDLYSKCGDVDVARRVFD 287

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
               +D  SW  M+ GY  +G   + LE F  M       ++++ V    A +    +E+
Sbjct: 288 QMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEK 347

Query: 474 GKK 476
           GK+
Sbjct: 348 GKE 350


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/598 (35%), Positives = 328/598 (54%), Gaps = 1/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF  +   +VVS+N +L  YA+    ++ + LF  M        K +   +L  F  
Sbjct: 182 ARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTT 241

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G+ +H + +  G   D  +  +LV M  +CG  D+A + F  I D DVV + A+
Sbjct: 242 PSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNAL 301

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I  L Q G   EA + +  MR   V  N+    S++ A + +     G+ IH+ I + G 
Sbjct: 302 IAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGH 361

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            SD  +GNAL+SMY   G +     +F  +  +D +SWNA+ + +   E   + +R++ Q
Sbjct: 362 SSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQ 421

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +G KP   TF+ +L AC++ S    GK +H   ++  +  N  +  +L++MY + G 
Sbjct: 422 MQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGS 481

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L +A   F+    +D+ ++ ++I  +AQ G  E A K F++M+ E ++ +  T AS L+G
Sbjct: 482 LMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSG 541

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C     L  G+ +H    ++G  LD+ +  AL+ MY +CGS+ DA  VF     RD  SW
Sbjct: 542 CKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSW 601

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGY-VPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
             MIGG    G   KA+E F  M +EG+  PD  TF  +LSAC+H GL+ EG + FSS++
Sbjct: 602 TAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSME 661

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
             YG+ PTI+H+ C++ +LGRA +F E E  I +    P+A VWE LLGAC  HGNI L 
Sbjct: 662 SEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALA 721

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           E  A   L+L  +  + Y+  S++ A  GRW+D + +R ++  +GI+KEP  SWIEVD
Sbjct: 722 EHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVD 779



 Score =  278 bits (712), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 164/562 (29%), Positives = 287/562 (51%), Gaps = 9/562 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A +VFK MP  +V+SWN+L++ YA+ G  +K   LF  M++     +K +  ++L    +
Sbjct: 81  AHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYS 140

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ G+ +H+  I+ G   D  +  SL+ MY KCG    A +VF  I   DVV++  +
Sbjct: 141 PAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTM 200

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    Q+   +E   +F  M    + P++    +L+ A T       G+ IH +  + G 
Sbjct: 201 LGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGL 260

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            SD  VG ALV+M +  G V    + F+ IA +D V +NAL +    +    +    +Y+
Sbjct: 261 NSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYR 320

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G   N  T++ IL ACS+   +  GK +H+H  +     +  +G +L+ MY + G 
Sbjct: 321 MRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGD 380

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L  A   F ++  +DL ++ AII  YA+  +   A++ +++M+ EG+K    T    L+ 
Sbjct: 381 LPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSA 440

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+  +  A+G+++H   +++G   +  ++ AL+ MY +CGS+ +A+ VF+G+  RD  SW
Sbjct: 441 CANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISW 500

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N MI G+ +HG  E A + F+ M +E   PD ITF  VLS C +   +E GK+    I +
Sbjct: 501 NSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITE 560

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
             G+   +     +I++  R G   +  N     +   + + W  ++G C+       D+
Sbjct: 561 -SGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHR-DVMSWTAMIGGCA-------DQ 611

Query: 544 KDAEKLLELEPKMESNYVFPSD 565
            +  K +EL  +M++    P D
Sbjct: 612 GEDMKAIELFWQMQNEGFRPPD 633



 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 155/497 (31%), Positives = 261/497 (52%), Gaps = 7/497 (1%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           +HA  +  G   D FLS  L++MY KC    +A +VF  +   DV++W ++I+C  QQG 
Sbjct: 49  IHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGF 108

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
            ++A ++F  M+ +   PN+    S++ A     +   G+ IH+ I K G++ D  V N+
Sbjct: 109 KKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNS 168

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           L+SMY + G +    +VF  I+ +D VS+N +   +       + L +F QM  +G  P+
Sbjct: 169 LLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPD 228

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
             T+I +L A ++ S +  GK++H  T++  L+ +  VGT+LV M  + G ++ A  AF 
Sbjct: 229 KVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFK 288

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
            +A++D+  Y A+I + AQ G    A + + +MR +G+  N  T  S LN CS    L  
Sbjct: 289 GIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEA 348

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
           G+L+HS   + GH  D+ +  AL++MYA+CG +  A  +F     RD  SWN +I GY +
Sbjct: 349 GKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYAR 408

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK 492
                +A+  ++ M  EG  P  +TF+ +LSAC++     +GK     I +  GI     
Sbjct: 409 REDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILR-SGIKSNGH 467

Query: 493 HFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLL-- 550
               ++++  R G   E +N    T+   + + W +++   + HG+ E   K  +++   
Sbjct: 468 LANALMNMYRRCGSLMEAQNVFEGTQ-ARDVISWNSMIAGHAQHGSYETAYKLFQEMQNE 526

Query: 551 ELEPKMESNYVFPSDIS 567
           ELEP    N  F S +S
Sbjct: 527 ELEP---DNITFASVLS 540



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 118/441 (26%), Positives = 212/441 (48%), Gaps = 11/441 (2%)

Query: 128 DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDT 187
           +++ C  +   + N  +    + ++    +L++  T        + IHA + + G   D 
Sbjct: 3   NERHCGPDREDVSNTHQPRPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDI 62

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK 247
            + N L++MY++   V    +VF+ +  +D +SWN+L S +       +  ++F +M   
Sbjct: 63  FLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNA 122

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           GF PN  T+I IL AC S +++  GK++H+  IK     +  V  SL+ MY K G L  A
Sbjct: 123 GFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRA 182

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367
              F  ++ +D+ +Y  ++  YAQ    +  L  F +M  EGI  ++ T  + L+  +  
Sbjct: 183 RQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTP 242

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
           + L  G+ +H + V+ G   D+ V TALV M  +CG +D A+  FKG A RD   +N +I
Sbjct: 243 SMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALI 302

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGI 487
               +HG   +A E +  M  +G   +  T++ +L+ACS    +E GK   S I +  G 
Sbjct: 303 AALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISED-GH 361

Query: 488 TPTIKHFACMIDILGRAGKFTEI-ENFITETKLTPNALVWENLLGACSWHGNIELDEKDA 546
           +  ++    +I +  R G   +  E F T  K   + + W  ++   +         +D 
Sbjct: 362 SSDVQIGNALISMYARCGDLPKARELFYTMPKR--DLISWNAIIAGYA-------RREDR 412

Query: 547 EKLLELEPKMESNYVFPSDIS 567
            + + L  +M+S  V P  ++
Sbjct: 413 GEAMRLYKQMQSEGVKPGRVT 433


>gi|356546093|ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Glycine max]
          Length = 775

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/603 (36%), Positives = 333/603 (55%), Gaps = 7/603 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAES---GDGQKVMHLFCSMKDMEKKF--SKFSLSTVL 58
           A  VF S+   +VVSWN L+N +++         VMHLF  +    K    +  +L+ V 
Sbjct: 64  ANLVFDSINNKDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVF 123

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
              +     +AG+  HA+A++  C+ D F + SL++MY K GL   A  +F  + + + V
Sbjct: 124 TAASTLSDSRAGRQAHALAVKTACSHDVFAASSLLNMYCKTGLVFEARDLFDEMPERNAV 183

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMR--ESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
           +W  +I+    Q    EA ++F LMR  E     N+FV TS++ A T       G  +H+
Sbjct: 184 SWATMISGYASQELADEAFELFKLMRHEEKGKNENEFVFTSVLSALTCYMLVNTGRQVHS 243

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
           +  K G      V NALV+MY++ G +    + FE   +++S++W+A+ + F  +   D+
Sbjct: 244 LAMKNGLVCIVSVANALVTMYVKCGSLEDALKTFELSGNKNSITWSAMVTGFAQFGDSDK 303

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            L++FY M   G  P+  T + ++ ACS    +  G+Q+H +++K   +    V ++LVD
Sbjct: 304 ALKLFYDMHQSGELPSEFTLVGVINACSDACAIVEGRQMHGYSLKLGYELQLYVLSALVD 363

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           MY K G + DA   F+ +   D+  +T+IIT Y Q G+ E AL  + KM+L G+  N+ T
Sbjct: 364 MYAKCGSIVDARKGFECIQQPDVVLWTSIITGYVQNGDYEGALNLYGKMQLGGVIPNDLT 423

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
           +AS L  CS +A L  G+ +H+  +K    L++ + +AL AMYAKCGS+DD   +F    
Sbjct: 424 MASVLKACSNLAALDQGKQMHAGIIKYNFSLEIPIGSALSAMYAKCGSLDDGYRIFWRMP 483

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            RD  SWN MI G  ++G G + LE F  M  EG  PD +TFV +LSACSHMGL++ G  
Sbjct: 484 ARDVISWNAMISGLSQNGRGNEGLELFEKMCLEGTKPDNVTFVNLLSACSHMGLVDRGWV 543

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
           +F  +   + I PT++H+ACM+DIL RAGK  E + FI    +     +W  LL A   H
Sbjct: 544 YFKMMFDEFNIAPTVEHYACMVDILSRAGKLHEAKEFIESATVDHGLCLWRILLAASKNH 603

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSW 596
            + +L     EKL+EL     S YV  S I    G+W D   VR ++ ++G+ KEP CSW
Sbjct: 604 RDYDLGAYAGEKLMELGSLESSAYVLLSSIYTALGKWEDVERVRGMMKARGVTKEPGCSW 663

Query: 597 IEV 599
           IE+
Sbjct: 664 IEL 666



 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 136/424 (32%), Positives = 218/424 (51%), Gaps = 7/424 (1%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           ++ G+ +HA  +  G      ++ SL+++Y+KC     A  VF  I + DVV+W  +I  
Sbjct: 26  LRKGRALHARILVTGSFSSTQIANSLINLYAKCSHFSKANLVFDSINNKDVVSWNCLINA 85

Query: 127 LDQQGCCQEAAKIFNLMRE-----SSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
             QQ     +  + +L R+      ++ PN   LT +  A +   D R G   HA+  K 
Sbjct: 86  FSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFTAASTLSDSRAGRQAHALAVKT 145

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
               D    ++L++MY + G V     +F+ +  +++VSW  + S +   E  D+   +F
Sbjct: 146 ACSHDVFAASSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMISGYASQELADEAFELF 205

Query: 242 YQMLL--KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
             M    KG   N   F  +L A +    V  G+Q+H+  +K+ L     V  +LV MY 
Sbjct: 206 KLMRHEEKGKNENEFVFTSVLSALTCYMLVNTGRQVHSLAMKNGLVCIVSVANALVTMYV 265

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G LEDA   F+   NK+   ++A++T +AQ G+++ ALK F  M   G   +EFTL  
Sbjct: 266 KCGSLEDALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVG 325

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            +N CS    +  GR +H  ++K G+ L ++V +ALV MYAKCGSI DA   F+     D
Sbjct: 326 VINACSDACAIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKCGSIVDARKGFECIQQPD 385

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
              W  +I GYV++G  E AL  +  M   G +P+++T   VL ACS++  +++GK+  +
Sbjct: 386 VVLWTSIITGYVQNGDYEGALNLYGKMQLGGVIPNDLTMASVLKACSNLAALDQGKQMHA 445

Query: 480 SIKK 483
            I K
Sbjct: 446 GIIK 449



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 130/422 (30%), Positives = 220/422 (52%), Gaps = 19/422 (4%)

Query: 154 VLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAI 213
           VL +LV  T      R G ++HA I   G  S T + N+L+++Y +    S  + VF++I
Sbjct: 13  VLRALVHCTRHK-QLRKGRALHARILVTGSFSSTQIANSLINLYAKCSHFSKANLVFDSI 71

Query: 214 AHQDSVSWNAL---FSRFQDYESPDQGLRIFYQMLL--KGFKPNMCTFIVILKACSSLSD 268
            ++D VSWN L   FS+ Q +      + +F Q+++  K   PN  T   +  A S+LSD
Sbjct: 72  NNKDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFTAASTLSD 131

Query: 269 VGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITS 328
              G+Q HA  +K +   +    +SL++MY K+G + +A   FD +  ++  ++  +I+ 
Sbjct: 132 SRAGRQAHALAVKTACSHDVFAASSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMISG 191

Query: 329 YAQAGEAEMALKCFRKMRLE--GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL 386
           YA    A+ A + F+ MR E  G   NEF   S L+  +    +  GR +HS+A+K G +
Sbjct: 192 YASQELADEAFELFKLMRHEEKGKNENEFVFTSVLSALTCYMLVNTGRQVHSLAMKNGLV 251

Query: 387 LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM 446
             + V+ ALV MY KCGS++DA   F+ S  +++ +W+ M+ G+ + G  +KAL+ F  M
Sbjct: 252 CIVSVANALVTMYVKCGSLEDALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDM 311

Query: 447 LDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAG 505
              G +P E T V V++ACS    I EG++ H  S+K  Y +   +   + ++D+  + G
Sbjct: 312 HQSGELPSEFTLVGVINACSDACAIVEGRQMHGYSLKLGYELQLYV--LSALVDMYAKCG 369

Query: 506 KFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSD 565
              +      E    P+ ++W +++     +G       D E  L L  KM+   V P+D
Sbjct: 370 SIVDARKGF-ECIQQPDVVLWTSIITGYVQNG-------DYEGALNLYGKMQLGGVIPND 421

Query: 566 IS 567
           ++
Sbjct: 422 LT 423



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 91/272 (33%), Positives = 152/272 (55%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A + F+     N ++W+A++ G+A+ GD  K + LF  M    +  S+F+L  V+  
Sbjct: 270 LEDALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVINA 329

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +++  I  G+ +H  +++LG  L  ++  +LVDMY+KCG   +A K F  I+ PDVV W
Sbjct: 330 CSDACAIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKCGSIVDARKGFECIQQPDVVLW 389

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +IIT   Q G  + A  ++  M+   V PN   + S+++A +       G+ +HA I K
Sbjct: 390 TSIITGYVQNGDYEGALNLYGKMQLGGVIPNDLTMASVLKACSNLAALDQGKQMHAGIIK 449

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           Y F  +  +G+AL +MY + G +  G R+F  +  +D +SWNA+ S        ++GL +
Sbjct: 450 YNFSLEIPIGSALSAMYAKCGSLDDGYRIFWRMPARDVISWNAMISGLSQNGRGNEGLEL 509

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFG 272
           F +M L+G KP+  TF+ +L ACS +  V  G
Sbjct: 510 FEKMCLEGTKPDNVTFVNLLSACSHMGLVDRG 541


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/605 (34%), Positives = 346/605 (57%), Gaps = 7/605 (1%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           ++AK++F  MP+ NVVSWN+L++GY + G   +VM+LF   +  + +  KF+ S  L   
Sbjct: 71  DVAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVC 130

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
             +  ++ G+++HA+    G      L+ SL+DMY KCG  D A  VF    + D V+W 
Sbjct: 131 GRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWN 190

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRA--TTETGDQRCGESIHAVIC 179
           ++I    + G   E  ++   M    +  N + L S ++A  +  +    CG+ +H    
Sbjct: 191 SLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAV 250

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES-----P 234
           K G + D +VG AL+  Y + G +   +++F+ +   + V +NA+ + F   E+      
Sbjct: 251 KLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFA 310

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
           ++ + +F++M  +G KP+  TF  ILKACS++     GKQ+HA   K++L  +  +G +L
Sbjct: 311 NEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNAL 370

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           V++Y  SG +ED    F S    D+ ++T++I  + Q G+ E  L  F ++   G K +E
Sbjct: 371 VELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDE 430

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
           FT++  L+ C+ +A + +G  +H+ A+KTG      +  + + MYAKCG ID A   FK 
Sbjct: 431 FTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKE 490

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
           +   D  SW++MI    +HG  ++A++ F +M   G  P+ ITF+ VL ACSH GL+EEG
Sbjct: 491 TKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEG 550

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
            ++F  +KK +GITP +KH AC++D+LGRAG+  E E+FI ++    + ++W +LL AC 
Sbjct: 551 LRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACR 610

Query: 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSC 594
            H   +  ++ AE+++ELEP+  ++YV   +I    G     + +R L+  +G+KKEP  
Sbjct: 611 VHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGL 670

Query: 595 SWIEV 599
           SWIEV
Sbjct: 671 SWIEV 675



 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 171/536 (31%), Positives = 266/536 (49%), Gaps = 26/536 (4%)

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +G +  G++ H   I+       FL  +L+ MY KCG  D A K+F R+   +VV+W ++
Sbjct: 32  TGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAKKLFDRMPKRNVVSWNSL 91

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   Q G   E   +F   R S ++ ++F  ++ +     T D R G  IHA+I   G 
Sbjct: 92  ISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLIHALITVSGL 151

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
               L+ N+L+ MY + GR+ +   VFE+    DSVSWN+L + +    S D+ LR+  +
Sbjct: 152 GGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVK 211

Query: 244 MLLKGFKPNMCTFIVILKACSS--LSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
           ML  G   N       LKAC S   S +  GK LH   +K  LD + VVGT+L+D Y K 
Sbjct: 212 MLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKI 271

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQ----AGE-AEMALKCFRKMRLEGIKSNEFT 356
           G LEDA   F  + + ++  Y A+I  + Q    A E A  A+  F +M+  G+K +EFT
Sbjct: 272 GDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFT 331

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
            +S L  CS +     G+ +H+   K     D F+  ALV +Y+  GSI+D    F  + 
Sbjct: 332 FSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTP 391

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
             D  SW  +I G+V++G  E  L  F  +L  G  PDE T  ++LSAC+++  ++ G++
Sbjct: 392 KLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQ 451

Query: 477 -HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
            H  +IK   G    I++    I +  + G          ETK  P+ + W  ++ + + 
Sbjct: 452 IHAYAIKTGIGNFTIIQN--SQICMYAKCGDIDSANMTFKETK-NPDIVSWSVMISSNAQ 508

Query: 536 HGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
           HG      K+A  L EL   M+ + + P+ I+        F GV    S  G+ +E
Sbjct: 509 HGC----AKEAVDLFEL---MKGSGIAPNHIT--------FLGVLVACSHGGLVEE 549



 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 133/442 (30%), Positives = 225/442 (50%), Gaps = 9/442 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK- 59
           ++ A+ VF+S  EL+ VSWN+L+ GY   G   +++ L   M       + ++L + LK 
Sbjct: 171 IDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKA 230

Query: 60  -GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
            G   S  I+ G+++H  A++LG  LD  +  +L+D Y+K G  ++A K+F  + DP+VV
Sbjct: 231 CGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVV 290

Query: 119 AWGAIITCLDQQGC-----CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES 173
            + A+I    Q          EA  +F  M+   +KP++F  +S+++A +      CG+ 
Sbjct: 291 MYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQ 350

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           IHA I KY  +SD  +GNALV +Y  +G +  G + F +    D VSW +L         
Sbjct: 351 IHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQ 410

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
            + GL +F+++L  G KP+  T  ++L AC++L+ V  G+Q+HA+ IK  +    ++  S
Sbjct: 411 FEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNS 470

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
            + MY K G ++ A + F    N D+ +++ +I+S AQ G A+ A+  F  M+  GI  N
Sbjct: 471 QICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPN 530

Query: 354 EFTLASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
             T    L  CS    +  G R    +    G   ++  S  +V +  + G + +AE+  
Sbjct: 531 HITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFI 590

Query: 413 KGSALR-DTASWNMMIGGYVKH 433
             S    D   W  ++     H
Sbjct: 591 MDSGFEGDPVMWRSLLSACRVH 612



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 161/335 (48%), Gaps = 7/335 (2%)

Query: 156 TSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH 215
           T LV+ +T TG    G+  H  + K  F+    + N L+ MY + G      ++F+ +  
Sbjct: 23  TKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAKKLFDRMPK 82

Query: 216 QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL 275
           ++ VSWN+L S +       + + +F +  +   + +  TF   L  C    D+  G+ +
Sbjct: 83  RNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLI 142

Query: 276 HAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEA 335
           HA      L G  ++  SL+DMY K G ++ A + F+S    D  ++ ++I  Y + G  
Sbjct: 143 HALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSN 202

Query: 336 EMALKCFRKMRLEGIKSNEFTLASCLNGCSP--VATLANGRLLHSIAVKTGHLLDMFVST 393
           +  L+   KM   G+  N + L S L  C     +++  G++LH  AVK G  LD+ V T
Sbjct: 203 DEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGT 262

Query: 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK-----HGLGEKALEAFRMMLD 448
           AL+  YAK G ++DA  +FK     +   +N MI G+++          +A+  F  M  
Sbjct: 263 ALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQS 322

Query: 449 EGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
            G  P E TF  +L ACS +   E GK+  + I K
Sbjct: 323 RGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFK 357



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 2/184 (1%)

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
           G+  +  T    +   +   +L +G+L H   +KT     +F+   L+ MY KCG  D A
Sbjct: 14  GLPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVA 73

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
           + +F     R+  SWN +I GY + G   + +  F+         D+ TF   LS C   
Sbjct: 74  KKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRT 133

Query: 469 GLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWEN 528
             +  G+    ++  + G+   +     +ID+  + G+  +    + E+    +++ W +
Sbjct: 134 LDLRLGRL-IHALITVSGLGGPVLLTNSLIDMYCKCGRI-DWARLVFESADELDSVSWNS 191

Query: 529 LLGA 532
           L+  
Sbjct: 192 LIAG 195


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/600 (34%), Positives = 332/600 (55%), Gaps = 1/600 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ VF  + E   V+W  ++ GY + G     + LF  M++      ++ +S+VL  
Sbjct: 180 IEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSA 239

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +   +++ G+ +HA  +R G  +D  +   L+D Y+KC       K+F ++   ++++W
Sbjct: 240 CSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISW 299

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+   Q     EA K+F  M     KP+ F  TS++ +         G  +HA   K
Sbjct: 300 TTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIK 359

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              ESD  V N L+ MY ++  +    +VF+ +A Q+ +S+NA+   +   E   + L +
Sbjct: 360 ANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALEL 419

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F++M ++ F P++ TF+ +L   +SL  +   KQ+H   IK  +  +   G++L+D+Y K
Sbjct: 420 FHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVSLDLFAGSALIDVYSK 479

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
              ++DA   F+ +  KD+  + A+   Y Q  E E ALK +  ++    K NEFT A+ 
Sbjct: 480 CSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAAL 539

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           +   S +A+L +G+  H+  VK G     FV+ ALV MYAKCGSI++A  +F  S  RD 
Sbjct: 540 ITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDV 599

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
             WN MI  + +HG  E+AL  FR M+ EG  P+ +TFV VLSACSH G +E+G  HF+S
Sbjct: 600 VCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNS 659

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +   +GI P  +H+AC++ +LGR+GK  E + FI +  + P A+VW +LL AC   GN+E
Sbjct: 660 MPG-FGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVE 718

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           L +  AE  +  +PK   +Y+  S+I A++G W D   VR  + S  + KEP  SWIEV+
Sbjct: 719 LGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVN 778



 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 147/542 (27%), Positives = 282/542 (52%), Gaps = 11/542 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKF----SKFSLSTVLK 59
           A+ VF  MP  N+++W+++++ Y++ G  ++ + +F    D+++K     ++F L++V++
Sbjct: 81  ARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFV---DLQRKSGEHPNEFVLASVIR 137

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
                G ++ G  +H   +R G   D ++  SL+D YSK G  + A  VF ++ +   V 
Sbjct: 138 ACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVT 197

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  II    + G    + ++F  MRE++V P+++V++S++ A +       G+ IHA + 
Sbjct: 198 WTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVL 257

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           + G E D  V N L+  Y +  RV  G ++F+ +  ++ +SW  + S +       + ++
Sbjct: 258 RRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMK 317

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F +M   G+KP+      +L +C S   +  G+Q+HA+TIK +L+ +  V   L+DMY 
Sbjct: 318 LFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYA 377

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           KS  L DA   FD +A +++ +Y A+I  Y+   +   AL+ F +MR+     +  T  S
Sbjct: 378 KSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVS 437

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L   + +  L   + +H + +K G  LD+F  +AL+ +Y+KC  + DA  VF+    +D
Sbjct: 438 LLGVSASLFALELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKD 497

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HF 478
              WN M  GY +H   E+AL+ +  +      P+E TF  +++A S++  +  G++ H 
Sbjct: 498 IVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHN 557

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
             +K      P + +   ++D+  + G   E       + +  + + W +++   + HG 
Sbjct: 558 QLVKMGLDFCPFVTN--ALVDMYAKCGSIEEARKMFN-SSIWRDVVCWNSMISTHAQHGE 614

Query: 539 IE 540
            E
Sbjct: 615 AE 616



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 139/502 (27%), Positives = 243/502 (48%), Gaps = 10/502 (1%)

Query: 71  QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
           +++H   I  G   D FL+  L+++ SK    DNA  VF ++   +++ W ++++   QQ
Sbjct: 47  KIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQ 106

Query: 131 GCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
           G  +EA  +F +L R+S   PN+FVL S++RA T+ G    G  +H  + + GF+ D  V
Sbjct: 107 GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYV 166

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
           G +L+  Y +NG +     VF+ ++ + +V+W  + + +         L +F QM     
Sbjct: 167 GTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNV 226

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
            P+      +L ACS L  +  GKQ+HA+ ++   + +  V   L+D Y K   ++    
Sbjct: 227 VPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRK 286

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369
            FD +  K++ ++T +I+ Y Q      A+K F +M   G K + F   S L  C     
Sbjct: 287 LFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREA 346

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           L  GR +H+  +K     D FV   L+ MYAK   + DA+ VF   A ++  S+N MI G
Sbjct: 347 LEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEG 406

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITP 489
           Y       +ALE F  M    + P  +TFV +L   + +  +E  K+    I K +G++ 
Sbjct: 407 YSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIK-FGVSL 465

Query: 490 TIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKL 549
            +   + +ID+  +     +  +   E     + +VW  +    + H    L+ ++A KL
Sbjct: 466 DLFAGSALIDVYSKCSYVKDARHVFEEMN-EKDIVVWNAMFFGYTQH----LENEEALKL 520

Query: 550 ---LELEPKMESNYVFPSDISA 568
              L+   +  + + F + I+A
Sbjct: 521 YSTLQFSRQKPNEFTFAALITA 542



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 121/232 (52%), Gaps = 1/232 (0%)

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
           +   +P    F  +L+   S + +   K +H   I   L  +  +   L+++  KS  ++
Sbjct: 20  IPNLRPKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDRVD 79

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFTLASCLNGC 364
           +A V FD + +K+L  ++++++ Y+Q G +E AL  F  + R  G   NEF LAS +  C
Sbjct: 80  NARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRAC 139

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
           + +  +  G  LH   V++G   D++V T+L+  Y+K G+I++A  VF   + +   +W 
Sbjct: 140 TQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWT 199

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            +I GY K G    +LE F  M +   VPD      VLSACS +  +E GK+
Sbjct: 200 TIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQ 251


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/600 (34%), Positives = 333/600 (55%), Gaps = 1/600 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E+A+ VF  + E   V+W  ++ GY + G     + LF  M++      ++ +S+VL  
Sbjct: 88  IEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPDRYVVSSVLSA 147

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +   +++ G+ +HA  +R G  +D  +   L+D Y+KC       K+F ++   ++++W
Sbjct: 148 CSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISW 207

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+   Q     EA K+F  M     KP+ F  TS++ +         G  +HA   K
Sbjct: 208 TTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIK 267

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              ES+  V N L+ MY ++  +    +VF+ +A Q+ +S+NA+   +   E   + L +
Sbjct: 268 ANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALEL 327

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F++M ++ F P++ TF+ +L   +SL  +   KQ+H   IK  +  +   G++L+D+Y K
Sbjct: 328 FHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSLDLFAGSALIDVYSK 387

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
              ++DA   F+ +  KD+  + A+   Y Q  E E ALK +  ++    K NEFT A+ 
Sbjct: 388 CSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAAL 447

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           +   S +A+L +G+  H+  VK G     FV+ ALV MYAKCGSI++A  +F  S  RD 
Sbjct: 448 ITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDV 507

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
             WN MI  + +HG  E+AL  FR M+ EG  P+ +TFV VLSACSH G +E+G  HF+S
Sbjct: 508 VCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGXVEDGLNHFNS 567

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +   +GI P  +H+AC++ +LGR+GK  E + FI +  + P A+VW +LL AC   GN+E
Sbjct: 568 MPG-FGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVE 626

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           L +  AE  +  +PK   +Y+  S+I A++G W D   VR  + S  + KEP  SWIEV+
Sbjct: 627 LGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVN 686



 Score =  241 bits (616), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 137/492 (27%), Positives = 253/492 (51%), Gaps = 4/492 (0%)

Query: 50  SKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF 109
           ++F L++V++     G ++ G  +H   +R G   D ++  SL+D YSK G  + A  VF
Sbjct: 36  NEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGBIEVARLVF 95

Query: 110 YRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
            ++ +   V W  II    + G    + ++F  MRE++V P+++V++S++ A +      
Sbjct: 96  DQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLE 155

Query: 170 CGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
            G+ IHA + + G E D  V N L+  Y +  RV  G ++F+ +  ++ +SW  + S + 
Sbjct: 156 GGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYM 215

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
                 + +++F +M   G+KP+      +L +C SL  +  G+Q+HA+TIK +L+ N  
Sbjct: 216 QNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEF 275

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           V   L+DMY KS  L DA   FD +A +++ +Y A+I  Y+   +   AL+ F +MR+  
Sbjct: 276 VKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRL 335

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
              +  T  S L   + +  L   + +H + +K G  LD+F  +AL+ +Y+KC  + DA 
Sbjct: 336 FPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDAR 395

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
            VF+    +D   WN M  GY +H   E+AL+ +  +      P+E TF  +++A S++ 
Sbjct: 396 HVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLA 455

Query: 470 LIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWEN 528
            +  G++ H   +K      P + +   ++D+  + G   E       + +  + + W +
Sbjct: 456 SLRHGQQFHNQLVKMGLDFCPFVTN--ALVDMYAKCGSIEEARKMFN-SSIWRDVVCWNS 512

Query: 529 LLGACSWHGNIE 540
           ++   + HG  E
Sbjct: 513 MISTHAQHGEAE 524



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 121/446 (27%), Positives = 212/446 (47%), Gaps = 10/446 (2%)

Query: 127 LDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
           ++ +G  +EA  +F +L R+S   PN+FVL S++RA T+ G    G  +H  + + GF+ 
Sbjct: 11  MEDEGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQ 70

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           D  VG +L+  Y +NG +     VF+ +  + +V+W  + + +         L +F QM 
Sbjct: 71  DVYVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMR 130

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
                P+      +L ACS L  +  GKQ+HA+ ++   + +  V   L+D Y K   ++
Sbjct: 131 ETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVK 190

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
                FD +  K++ ++T +I+ Y Q      A+K F +M   G K + F   S L  C 
Sbjct: 191 AGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCG 250

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
            +  L  GR +H+  +K     + FV   L+ MYAK   + DA+ VF   A ++  S+N 
Sbjct: 251 SLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNA 310

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIY 485
           MI GY       +ALE F  M    + P  +TFV +L   + +  +E  K+    I K  
Sbjct: 311 MIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKX- 369

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKD 545
           G++  +   + +ID+  +     +  +   E     + +VW  +    + H    L+ ++
Sbjct: 370 GVSLDLFAGSALIDVYSKCSYVKDARHVFEEMN-EKDIVVWNAMFFGYTQH----LENEE 424

Query: 546 AEKL---LELEPKMESNYVFPSDISA 568
           A KL   L+   +  + + F + I+A
Sbjct: 425 ALKLYSTLQFSRQKPNEFTFAALITA 450


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/598 (36%), Positives = 342/598 (57%), Gaps = 8/598 (1%)

Query: 5   KRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANS 64
           ++VF++MP+ NVV+W +LL GY + G    VM LF  M+      +  + ++VL   A+ 
Sbjct: 159 RKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQ 218

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
           G +  G+ VHA +++ GC    F+  SL++MY+KCGL + A  VF  ++  D+V+W  ++
Sbjct: 219 GMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLM 278

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
             L   G   EA ++F+  R S     Q    ++++             +H+ + K GF 
Sbjct: 279 AGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFH 338

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALFSR-FQDYESPDQGLRIFY 242
           S   V  AL+  Y + G++     +F  ++  Q+ VSW A+ +   Q+ + P     +F 
Sbjct: 339 SYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVP-LAAALFS 397

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M   G  PN  T+  IL A    S      Q+HA  IK + +   +VGT+L+  Y K  
Sbjct: 398 RMREDGVAPNDFTYSTILTA----SVASLPPQIHAQVIKTNYECTSIVGTALLASYSKLC 453

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
             E+A   F  +  KD+ +++A++T YAQAG+++ A   F KM + G+K NEFT++S ++
Sbjct: 454 NTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVID 513

Query: 363 GC-SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
            C SP A +  GR  H+I++K      + VS+ALV+MYA+ GSI+ A+ +F+    RD  
Sbjct: 514 ACASPTAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIESAQCIFERQTDRDLV 573

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SWN M+ GY +HG  +KAL+ FR M  EG   D +TF+ V+  C+H GL+EEG+++F S+
Sbjct: 574 SWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSM 633

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
            + YGITPT++H+ACM+D+  RAGK  E  + I         +VW  LLGAC  H N+EL
Sbjct: 634 ARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMSFPAGPMVWRTLLGACKVHKNVEL 693

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            +  AEKLL LEP   + YV  S+I +  G+W +   VR L+ ++ +KKE  CSWI++
Sbjct: 694 GKLAAEKLLSLEPFDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVKKEAGCSWIQI 751



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 132/448 (29%), Positives = 225/448 (50%), Gaps = 11/448 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ VF  M   ++VSWN L+ G   +G   + + LF   +      ++ + +TV+K 
Sbjct: 256 VEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKL 315

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVVA 119
            AN   +   + +H+  ++ G      +  +L+D YSK G   NAL +F  +    +VV+
Sbjct: 316 CANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVS 375

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W A+I    Q G    AA +F+ MRE  V PN F  ++++ A+  +        IHA + 
Sbjct: 376 WTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTASVAS----LPPQIHAQVI 431

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K  +E  ++VG AL++ Y +         +F+ I  +D VSW+A+ + +      D    
Sbjct: 432 KTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATN 491

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSS-LSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           IF +M + G KPN  T   ++ AC+S  + V  G+Q HA +IKH       V ++LV MY
Sbjct: 492 IFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSALVSMY 551

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            + G +E A   F+   ++DL ++ ++++ YAQ G ++ AL  FR+M  EGI+ +  T  
Sbjct: 552 ARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFL 611

Query: 359 SCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           S + GC+    +  G R   S+A   G    M     +V +Y++ G +D+A ++ +G + 
Sbjct: 612 SVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMSF 671

Query: 418 R-DTASWNMMIGGYVKHG---LGEKALE 441
                 W  ++G    H    LG+ A E
Sbjct: 672 PAGPMVWRTLLGACKVHKNVELGKLAAE 699



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 144/557 (25%), Positives = 256/557 (45%), Gaps = 15/557 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++ F  +P  N +  +AL +        Q + H     +    +    +L  VLK   +
Sbjct: 57  ARQAFDEIPHRNTLD-HALFDHARRGSVHQALDHFLDVHRCHGGRVGGGALVGVLKVCGS 115

Query: 64  SGYIKAGQVVHAMAIRLGCAL-DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
                 G+ +H + IR G    D  +  SLVDMY K     +  KVF  +   +VV W +
Sbjct: 116 VPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTS 175

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           ++T   Q G   +  ++F  MR   V PN     S++      G    G  +HA   K+G
Sbjct: 176 LLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFG 235

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
             S   V N+L++MY + G V     VF  +  +D VSWN L +         + L++F+
Sbjct: 236 CCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFH 295

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
                       T+  ++K C+++  +G  +QLH+  +K        V T+L+D Y K+G
Sbjct: 296 DSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAG 355

Query: 303 CLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
            L +A   F  ++ ++++ ++TA+I    Q G+  +A   F +MR +G+  N+FT ++ L
Sbjct: 356 QLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTIL 415

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
              + VA+L     +H+  +KT +     V TAL+A Y+K  + ++A ++FK    +D  
Sbjct: 416 T--ASVASLPPQ--IHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVV 471

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SW+ M+  Y + G  + A   F  M   G  P+E T   V+ AC+      +  + F +I
Sbjct: 472 SWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAI 531

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
              +     +   + ++ +  R G   E    I E +   + + W ++L   + HG    
Sbjct: 532 SIKHRCHDALCVSSALVSMYARKGSI-ESAQCIFERQTDRDLVSWNSMLSGYAQHGY--- 587

Query: 542 DEKDAEKLLELEPKMES 558
               ++K L++  +ME+
Sbjct: 588 ----SQKALDVFRQMEA 600



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/392 (27%), Positives = 186/392 (47%), Gaps = 12/392 (3%)

Query: 208 RVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM-LLKGFKPNMCTFIVILKACSSL 266
           + F+ I H++++  +ALF   +   S  Q L  F  +    G +      + +LK C S+
Sbjct: 59  QAFDEIPHRNTLD-HALFDHAR-RGSVHQALDHFLDVHRCHGGRVGGGALVGVLKVCGSV 116

Query: 267 SDVGFGKQLHAHTIKHSLD-GNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
            D   GKQLH   I+   D G+  VGTSLVDMY K   + D    F+++  +++  +T++
Sbjct: 117 PDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSL 176

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH 385
           +T Y Q G     ++ F +MR EG+  N  T AS L+  +    +  GR +H+ +VK G 
Sbjct: 177 LTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGC 236

Query: 386 LLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRM 445
              +FV  +L+ MYAKCG +++A  VF G   RD  SWN ++ G V +G   +AL+ F  
Sbjct: 237 CSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHD 296

Query: 446 MLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAG 505
                 +  + T+  V+  C+++  +   ++  SS+ K  G          ++D   +AG
Sbjct: 297 SRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLK-RGFHSYGNVMTALMDAYSKAG 355

Query: 506 KFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSD 565
           +     +       + N + W  ++  C  +G++ L          L  +M  + V P+D
Sbjct: 356 QLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAA-------LFSRMREDGVAPND 408

Query: 566 ISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
            + +       + +   + +Q IK    C+ I
Sbjct: 409 FTYSTILTASVASLPPQIHAQVIKTNYECTSI 440


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/633 (32%), Positives = 344/633 (54%), Gaps = 36/633 (5%)

Query: 5   KRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANS 64
           ++VF+ M   +VV+W++++  YA +    K    F  MKD   + ++ +  ++LK   N 
Sbjct: 133 EQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNY 192

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
             ++  + +H +    G   D  ++ +L+ MYSKCG    A ++F ++K+ +VV+W AII
Sbjct: 193 SMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAII 252

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
               Q     EA +++  M ++ + PN     SL+ +         G  IH+ I + G E
Sbjct: 253 QANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLE 312

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALF-----SRFQDYESPDQGLR 239
           +D +V NAL++MY +   +      F+ ++ +D +SW+A+      S +QD ES D+  +
Sbjct: 313 TDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQ 372

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +  +M  +G  PN  TF+ ILKACS    +  G+Q+HA   K   + +  + T++ +MY 
Sbjct: 373 LLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYA 432

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIIT-------------------------------S 328
           K G + +A   F  + NK++ A+ +++T                                
Sbjct: 433 KCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAG 492

Query: 329 YAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLD 388
           YAQ+G+     +    M++EG + +  T+ S L  C  ++ L  G+L+H+ AVK G   D
Sbjct: 493 YAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESD 552

Query: 389 MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
             V+T+L+ MY+KCG + +A  VF   + RDT +WN M+ GY +HG+G +A++ F+ ML 
Sbjct: 553 TVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLK 612

Query: 449 EGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFT 508
           E   P+EITF  V+SAC   GL++EG++ F  +++ + + P  +H+ CM+D+LGRAG+  
Sbjct: 613 ERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQ 672

Query: 509 EIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISA 568
           E E FI      P+  VW  LLGAC  H N++L E  A  +L LEP   S YV  S+I A
Sbjct: 673 EAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILRLEPSNASVYVTLSNIYA 732

Query: 569 TQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
             GRW+D + VR ++  +G+KK+   S IE+DG
Sbjct: 733 QAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDG 765



 Score =  249 bits (635), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 149/537 (27%), Positives = 253/537 (47%), Gaps = 47/537 (8%)

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
           G++VH     LG A+D +L  SL++ YSK G   +  +VF R+   DVV W ++I     
Sbjct: 97  GKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAG 156

Query: 130 QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
                +A   F  M++++++PN+    S+++A            IH V+   G E+D  V
Sbjct: 157 NNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAV 216

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
             AL++MY + G +S    +F+ +  ++ VSW A+      +   ++   ++ +ML  G 
Sbjct: 217 ATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGI 276

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
            PN  TF+ +L +C++   +  G+++H+H  +  L+ + VV  +L+ MY K  C++DA  
Sbjct: 277 SPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARE 336

Query: 310 AFDSLANKDLFAYTAIITSYAQAG-----EAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
            FD ++ +D+ +++A+I  YAQ+G       +   +   +MR EG+  N+ T  S L  C
Sbjct: 337 TFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKAC 396

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG---------- 414
           S    L  GR +H+   K G   D  + TA+  MYAKCGSI +AE VF            
Sbjct: 397 SVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWA 456

Query: 415 ---------------------SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP 453
                                 + R+  SWN+MI GY + G   K  E    M  EG+ P
Sbjct: 457 SLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQP 516

Query: 454 DEITFVVVLSACSHMGLIEEGK-KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIEN 512
           D +T + +L AC  +  +E GK  H  ++K   G+         +I +  + G+ TE   
Sbjct: 517 DRVTIISILEACGALSALERGKLVHAEAVK--LGLESDTVVATSLIGMYSKCGEVTEART 574

Query: 513 FITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISAT 569
              +     + + W  +L     HG          + ++L  +M    V P++I+ T
Sbjct: 575 VFDKIS-NRDTVAWNAMLAGYGQHG-------IGPEAVDLFKRMLKERVPPNEITFT 623



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 123/471 (26%), Positives = 212/471 (45%), Gaps = 38/471 (8%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + LA  +F+ M E NVVSW A++   A+     +   L+  M       +  +  ++L  
Sbjct: 230 ISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNS 289

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 +  G+ +H+     G   D  ++ +L+ MY KC    +A + F R+   DV++W
Sbjct: 290 CNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISW 349

Query: 121 GAIITCLDQQG-----CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH 175
            A+I    Q G        E  ++   MR   V PN+    S+++A +  G    G  IH
Sbjct: 350 SAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIH 409

Query: 176 AVICKYGFESDTLVGNALVSMY---------------MEN----------------GRVS 204
           A I K GFESD  +  A+ +MY               MEN                G ++
Sbjct: 410 AEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLT 469

Query: 205 YGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACS 264
              +VF  ++ ++ VSWN + + +       +   +   M ++GF+P+  T I IL+AC 
Sbjct: 470 SAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACG 529

Query: 265 SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA 324
           +LS +  GK +HA  +K  L+ + VV TSL+ MY K G + +A   FD ++N+D  A+ A
Sbjct: 530 ALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNA 589

Query: 325 IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           ++  Y Q G    A+  F++M  E +  NE T  + ++ C     +  GR +  I  +  
Sbjct: 590 MLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDF 649

Query: 385 HLLDMFVSTA-LVAMYAKCGSIDDAEAVFKGSALR-DTASWNMMIGGYVKH 433
            +         +V +  + G + +AE   +      D + W+ ++G    H
Sbjct: 650 RMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSH 700



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/421 (27%), Positives = 207/421 (49%), Gaps = 8/421 (1%)

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
           P  V+ G +   L + G  +EA ++  ++++  +  N      ++    +      G+ +
Sbjct: 42  PRSVSGGEVWR-LCKAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMV 100

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H  + + G   D  +GN+L++ Y + G V+   +VF  +  +D V+W+++ + +     P
Sbjct: 101 HKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHP 160

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
            +    F +M     +PN  TF+ ILKAC++ S +   +++H       ++ +  V T+L
Sbjct: 161 AKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATAL 220

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           + MY K G +  A   F  +  +++ ++TAII + AQ  +   A + + KM   GI  N 
Sbjct: 221 ITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNA 280

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            T  S LN C+    L  GR +HS   + G   D+ V+ AL+ MY KC  I DA   F  
Sbjct: 281 VTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDR 340

Query: 415 SALRDTASWNMMIGGYVKHGLGEKAL--EAFRM---MLDEGYVPDEITFVVVLSACSHMG 469
            + RD  SW+ MI GY + G  +K    E F++   M  EG  P+++TF+ +L ACS  G
Sbjct: 341 MSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHG 400

Query: 470 LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENL 529
            +E+G++  + I K+ G          + ++  + G   E E   ++ +   N + W +L
Sbjct: 401 ALEQGRQIHAEISKV-GFESDRSLQTAIFNMYAKCGSIYEAEQVFSKME-NKNVVAWASL 458

Query: 530 L 530
           L
Sbjct: 459 L 459



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 144/316 (45%), Gaps = 34/316 (10%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF  M   NVVSWN ++ GYA+SGD  KV  L  SMK    +  + ++ ++L+    
Sbjct: 471 AEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGA 530

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ G++VHA A++LG   D  ++ SL+ MYSKCG    A  VF +I + D VAW A+
Sbjct: 531 LSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAM 590

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    Q G   EA  +F  M +  V PN+   T+++ A    G  + G  I  ++ +   
Sbjct: 591 LAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQE--- 647

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
                         M+ G+  YG            V       R Q+ E        F Q
Sbjct: 648 -----------DFRMKPGKQHYGC----------MVDLLGRAGRLQEAEE-------FIQ 679

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
            +    +P++  +  +L AC S  +V    +  AH I      N  V  +L ++Y ++G 
Sbjct: 680 RM--PCEPDISVWHALLGACKSHDNVQLA-EWAAHHILRLEPSNASVYVTLSNIYAQAGR 736

Query: 304 LEDAGVAFDSLANKDL 319
            +D+      + +K L
Sbjct: 737 WDDSTKVRKVMDDKGL 752


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/598 (34%), Positives = 333/598 (55%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
            LA+RVF  MP  + V++N L++G+A+ G G+  + +F  M+         ++S++L   
Sbjct: 195 RLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAAC 254

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           A+ G ++ G  +H+   + G + D  +  SL+D+Y KCG  + AL +F      +VV W 
Sbjct: 255 ASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWN 314

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            ++    Q     ++ ++F  M+ + ++PNQF    ++R  T T +   GE IH++  K 
Sbjct: 315 LMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKT 374

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           GFESD  V   L+ MY + G +    RV E +  +D VSW ++ + +  +E     L  F
Sbjct: 375 GFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAF 434

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M   G  P+       +  C+ ++ +  G Q+HA        G+  +  +LV++Y + 
Sbjct: 435 KEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARC 494

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G + +A  +F+ +  KD      +++ +AQ+G  E ALK F +M   G+K N FT  S L
Sbjct: 495 GRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSAL 554

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           +  + +A +  G+ +H+  +KTGH  +  V  AL+++Y KCGS +DA+  F   + R+  
Sbjct: 555 SASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEV 614

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SWN +I    +HG G +AL+ F  M  EG  P+++TF+ VL+ACSH+GL+EEG  +F S+
Sbjct: 615 SWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSM 674

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
              YGI P   H+AC+IDI GRAG+    + FI E  +  +A+VW  LL AC  H NIE+
Sbjct: 675 SDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEV 734

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            E  A+ LLELEP   ++YV  S+  A   +W +   VR ++  +G++KEP  SWIEV
Sbjct: 735 GEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEV 792



 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 165/589 (28%), Positives = 301/589 (51%), Gaps = 19/589 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+RVF+ +   + VSW A+L+GYA++G G++ + L+  M       + + LS+VL     
Sbjct: 96  ARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTK 155

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +     G+++HA   + G   + F+  +++ +Y +CG    A +VF  +   D V +  +
Sbjct: 156 AELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTL 215

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   Q G  + A +IF  M+ S + P+   ++SL+ A    GD + G  +H+ + K G 
Sbjct: 216 ISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGI 275

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            SD ++  +L+ +Y++ G V     +F +    + V WN +   F       +   +F Q
Sbjct: 276 SSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQ 335

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G +PN  T+  IL+ C+   ++  G+Q+H+ ++K   + +  V   L+DMY K G 
Sbjct: 336 MQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGW 395

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           LE A    + L  KD+ ++T++I  Y Q    + AL  F++M+  GI  +   LAS ++G
Sbjct: 396 LEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISG 455

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +  +  G  +H+    +G+  D+ +  ALV +YA+CG I +A + F+   L+D  + 
Sbjct: 456 CAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITG 515

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK 482
           N ++ G+ + GL E+AL+ F  M   G   +  TFV  LSA +++  I++GK+ H   IK
Sbjct: 516 NGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIK 575

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
             +     + +   +I + G+ G F + +   +E     N + W  ++ +CS HG     
Sbjct: 576 TGHSFETEVGN--ALISLYGKCGSFEDAKMEFSEMS-ERNEVSWNTIITSCSQHGR---- 628

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
                + L+L  +M+   + P+D++        F GV A  S  G+ +E
Sbjct: 629 ---GLEALDLFDQMKKEGIKPNDVT--------FIGVLAACSHVGLVEE 666



 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 154/522 (29%), Positives = 258/522 (49%), Gaps = 10/522 (1%)

Query: 11  MPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAG 70
           M      S    L G+    D  KV+ LF               +  L+    +G  +  
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNG--RRW 58

Query: 71  QVV---HAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127
           QVV   HA A+  G    + +   L+D+YSK GL   A +VF  +   D V+W A+++  
Sbjct: 59  QVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGY 118

Query: 128 DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDT 187
            Q G  +EA  ++  M  + V P  +VL+S++ + T+      G  IHA   K+GF S+ 
Sbjct: 119 AQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEI 178

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK 247
            VGNA++++Y+  G      RVF  + H+D+V++N L S        +  L IF +M   
Sbjct: 179 FVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFS 238

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           G  P+  T   +L AC+SL D+  G QLH++  K  +  ++++  SL+D+Y K G +E A
Sbjct: 239 GLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETA 298

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367
            V F+S    ++  +  ++ ++ Q  +   + + F +M+  GI+ N+FT    L  C+  
Sbjct: 299 LVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCT 358

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
             +  G  +HS++VKTG   DM+VS  L+ MY+K G ++ A  V +    +D  SW  MI
Sbjct: 359 REIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMI 418

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGI 487
            GYV+H   + AL AF+ M   G  PD I     +S C+ +  + +G +  + I  + G 
Sbjct: 419 AGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARI-YVSGY 477

Query: 488 TPTIKHFACMIDILGRAGK----FTEIENFITETKLTPNALV 525
           +  +  +  ++++  R G+    F+  E    +  +T N LV
Sbjct: 478 SGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLV 519



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 119/373 (31%), Positives = 193/373 (51%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  +F S    NVV WN +L  + +  D  K   LFC M+    + ++F+   +L+ 
Sbjct: 295 VETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRT 354

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              +  I  G+ +H+++++ G   D ++S  L+DMYSK G  + A +V   +K+ DVV+W
Sbjct: 355 CTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSW 414

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I    Q  CC++A   F  M++  + P+   L S +         R G  IHA I  
Sbjct: 415 TSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYV 474

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G+  D  + NALV++Y   GR+      FE +  +D ++ N L S F      ++ L++
Sbjct: 475 SGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKV 534

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M   G K N+ TF+  L A ++L+++  GKQ+HA  IK        VG +L+ +Y K
Sbjct: 535 FMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGK 594

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G  EDA + F  ++ ++  ++  IITS +Q G    AL  F +M+ EGIK N+ T    
Sbjct: 595 CGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGV 654

Query: 361 LNGCSPVATLANG 373
           L  CS V  +  G
Sbjct: 655 LAACSHVGLVEEG 667


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/596 (33%), Positives = 333/596 (55%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F +M + + V++N L+NG ++ G G+K M LF  M+    +    +L++++   ++
Sbjct: 325 AEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSS 384

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G + +GQ +HA   +LG A +  +  +L+++Y+KC   + AL  F   +  +VV W  +
Sbjct: 385 DGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVM 444

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +         + + +IF  M+   + PNQ+   S+++     GD   GE IH+ I K  F
Sbjct: 445 LVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSF 504

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           + +  V + L+ MY + G++     +    A +D VSW  + + +  Y   D+ L  F Q
Sbjct: 505 QLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQ 564

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           ML +G + +       + AC+ L  +  G+Q+HA         +     +LV +Y K G 
Sbjct: 565 MLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGN 624

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +E+A +AF+     D  A+ A+++ + Q+G  E AL+ F +M  EGI SN FT  S +  
Sbjct: 625 IEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKA 684

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
            S  A +  G+ +H++  KTG+  +  V  A+++MYAKCGSI DA+  F   ++++  SW
Sbjct: 685 ASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSW 744

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N MI  Y KHG G +AL++F  M+     P+ +T V VLSACSH+GL+++G ++F S+  
Sbjct: 745 NAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNT 804

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            YG+ P  +H+ C++D+L RAG  +  ++FI E  + P+ALVW  LL AC  H N+E+ E
Sbjct: 805 EYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGE 864

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
             A  LLELEP+  + YV  S++ A   +W+     R  +  +G+KKEP  SWIEV
Sbjct: 865 FAAHHLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEV 920



 Score =  243 bits (619), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 163/597 (27%), Positives = 281/597 (47%), Gaps = 18/597 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG-FA 62
           A +VF  MPE  + +WN ++   A      KV  LF  M +     ++ + S VL+    
Sbjct: 122 ALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRG 181

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
            S      + +HA  I  G      +   L+D+YS+ G  D A +VF  +   D  +W A
Sbjct: 182 GSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVA 241

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I+ L +  C  EA ++F  M    + P  +  +S++ A  +      GE +H ++ K G
Sbjct: 242 MISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 301

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F SDT V NALVS+Y   G +     +F  ++ +D+V++N L +        ++ + +F 
Sbjct: 302 FSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFK 361

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M L G +P+  T   ++ ACSS   +  G+QLHA+T K     N  +  +L+++Y K  
Sbjct: 362 RMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCS 421

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            +E A   F     +++  +  ++ +Y    +   + + FR+M++E I  N++T  S L 
Sbjct: 422 DIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILK 481

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C  +  L  G  +HS  +KT   L+ +V + L+ MYAK G +D A  +    A +D  S
Sbjct: 482 TCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVS 541

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           W  MI GY ++   +KAL  FR MLD G   DE+     +SAC+ +  ++EG++   +  
Sbjct: 542 WTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQ-IHAQA 600

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
            + G +  +     ++ +  + G   E      +T+   N + W  L+      GN    
Sbjct: 601 CVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDN-IAWNALVSGFQQSGN---- 655

Query: 543 EKDAEKLLELEPKME------SNYVFPSDISATQGRWNDFSG--VRALLSSQGIKKE 591
               E+ L +  +M       +N+ F S + A     N   G  V A+++  G   E
Sbjct: 656 ---NEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSE 709



 Score =  241 bits (615), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 150/537 (27%), Positives = 267/537 (49%), Gaps = 2/537 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+RVF  +   +  SW A+++G +++    + + LFC M  +    + ++ S+VL  
Sbjct: 221 VDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSA 280

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 ++ G+ +H + ++LG + D ++  +LV +Y   G   +A  +F  +   D V +
Sbjct: 281 CKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTY 340

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I  L Q G  ++A ++F  M+   ++P+   L SLV A +  G    G+ +HA   K
Sbjct: 341 NTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTK 400

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GF S+  +  AL+++Y +   +      F     ++ V WN +   +   +      RI
Sbjct: 401 LGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRI 460

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QM ++   PN  T+  ILK C  L D+  G+Q+H+  IK S   N  V + L+DMY K
Sbjct: 461 FRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAK 520

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L+ A       A KD+ ++T +I  Y Q    + AL  FR+M   GI+S+E  L + 
Sbjct: 521 LGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNA 580

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           ++ C+ +  L  G+ +H+ A  +G   D+    ALV +Y+KCG+I++A   F+ +   D 
Sbjct: 581 VSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDN 640

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            +WN ++ G+ + G  E+AL  F  M  EG   +  TF   + A S    +++GK+  + 
Sbjct: 641 IAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAV 700

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           I K  G     +    +I +  + G  ++ +    E  +  N + W  ++ A S HG
Sbjct: 701 ITKT-GYDSETEVCNAIISMYAKCGSISDAKKQFLELSM-KNEVSWNAMINAYSKHG 755



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 133/465 (28%), Positives = 220/465 (47%), Gaps = 19/465 (4%)

Query: 53  SLSTVLKG-FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYR 111
           +L  +L+G    +G +  G+ +H+  ++LG   +  LS  L+D Y   G  D ALKVF  
Sbjct: 69  TLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDE 128

Query: 112 IKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG 171
           + +  +  W  +I  L  +    +   +F  M   +V PN+   + ++ A       R G
Sbjct: 129 MPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEAC------RGG 182

Query: 172 -------ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNAL 224
                  E IHA I   G    T+V N L+ +Y  NG V    RVF+ +  +D  SW A+
Sbjct: 183 SVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAM 242

Query: 225 FSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL 284
            S     E   + +R+F  M + G  P    F  +L AC  +  +  G+QLH   +K   
Sbjct: 243 ISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGF 302

Query: 285 DGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRK 344
             +  V  +LV +Y   G L  A   F +++ +D   Y  +I   +Q G  E A++ F++
Sbjct: 303 SSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKR 362

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404
           M+L+G++ +  TLAS +  CS   TL +G+ LH+   K G   +  +  AL+ +YAKC  
Sbjct: 363 MQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSD 422

Query: 405 IDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
           I+ A   F  + + +   WN+M+  Y        +   FR M  E  VP++ T+  +L  
Sbjct: 423 IETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKT 482

Query: 465 CSHMGLIEEGKKHFSSIKKIYGITPTIKHFAC--MIDILGRAGKF 507
           C  +G +E G++  S I K    +  +  + C  +ID+  + GK 
Sbjct: 483 CIRLGDLELGEQIHSQIIK---TSFQLNAYVCSVLIDMYAKLGKL 524



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/373 (29%), Positives = 181/373 (48%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A   F      NVV WN +L  Y    D +    +F  M+  E   ++++  ++LK 
Sbjct: 423 IETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKT 482

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
               G ++ G+ +H+  I+    L+ ++   L+DMY+K G  D A  +  R    DVV+W
Sbjct: 483 CIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSW 542

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I    Q     +A   F  M +  ++ ++  LT+ V A       + G+ IHA  C 
Sbjct: 543 TTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACV 602

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GF SD    NALV++Y + G +      FE     D+++WNAL S FQ   + ++ LR+
Sbjct: 603 SGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRV 662

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M  +G   N  TF   +KA S  +++  GKQ+HA   K   D    V  +++ MY K
Sbjct: 663 FARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAK 722

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G + DA   F  L+ K+  ++ A+I +Y++ G    AL  F +M    ++ N  TL   
Sbjct: 723 CGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGV 782

Query: 361 LNGCSPVATLANG 373
           L+ CS +  +  G
Sbjct: 783 LSACSHIGLVDKG 795



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 112/423 (26%), Positives = 209/423 (49%), Gaps = 13/423 (3%)

Query: 148 VKPNQFVLTSLVRATTET-GDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYG 206
           ++PN   L  L+    +T G    G  +H+ I K GF+++  +   L+  Y+  G +   
Sbjct: 63  IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGA 122

Query: 207 SRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266
            +VF+ +  +   +WN +           +   +F +M+ +   PN  TF  +L+AC   
Sbjct: 123 LKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGG 182

Query: 267 SDVGFG--KQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA 324
           S V F   +Q+HA  I   L  + +V   L+D+Y ++G ++ A   FD L  KD  ++ A
Sbjct: 183 S-VAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVA 241

Query: 325 IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           +I+  ++      A++ F  M + GI    +  +S L+ C  + +L  G  LH + +K G
Sbjct: 242 MISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 301

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
              D +V  ALV++Y   GS+  AE +F   + RD  ++N +I G  + G GEKA+E F+
Sbjct: 302 FSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFK 361

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA 504
            M  +G  PD  T   ++ ACS  G +  G++  +   K+ G     K    ++++  + 
Sbjct: 362 RMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKL-GFASNDKIEGALLNLYAKC 420

Query: 505 GKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKL---LELEPKMESNYV 561
                  N+  ET++  N ++W  +L A   +G ++ D +++ ++   +++E  + + Y 
Sbjct: 421 SDIETALNYFLETEV-ENVVLWNVMLVA---YGLLD-DLRNSFRIFRQMQIEEIVPNQYT 475

Query: 562 FPS 564
           +PS
Sbjct: 476 YPS 478



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 53/118 (44%), Gaps = 1/118 (0%)

Query: 349 GIKSNEFTLASCLNGCSPV-ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
           GI+ N  TL   L GC     +L  GR LHS  +K G   +  +S  L+  Y   G +D 
Sbjct: 62  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDG 121

Query: 408 AEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC 465
           A  VF     R   +WN MI       L  K    F  M++E   P+E TF  VL AC
Sbjct: 122 ALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEAC 179


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/604 (34%), Positives = 331/604 (54%), Gaps = 3/604 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++LA+ VF  +P+ +VV WN ++  YA SG  Q+ ++L+  M  +    + F+   +LK 
Sbjct: 57  IQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKA 116

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI--KDPDVV 118
            ++   ++ G+++H  A  LG ++D ++S +L+ MY+KCG    A  +F  I  +D D+V
Sbjct: 117 CSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIV 176

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           AW A+I          +       M+++ V PN   L S++    +      G++IHA  
Sbjct: 177 AWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYY 236

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            +  F  + ++  AL+ MY +   + Y  ++F  +  ++ V W+A+   +  ++S    L
Sbjct: 237 IRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDAL 296

Query: 239 RIFYQML-LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
            ++  ML + G  P   T   +L+AC+ L+D+  GK+LH H IK  +D +  VG SL+ M
Sbjct: 297 ALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISM 356

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K G +++A    D +  KD  +Y+AII+   Q G AE AL  FR+M+  GI     T+
Sbjct: 357 YAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETM 416

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
            + L  CS +A L +G   H   V  G   D  +  A++ MY+KCG I  +  +F     
Sbjct: 417 IALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQN 476

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           RD  SWN MI GY  HGL  +AL  F+ +   G  PD++T + VLSACSH GL+ EGK  
Sbjct: 477 RDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYW 536

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           FSS+ + + I P + H+ CM+D+L RAG   E   FI      PN  +W  LL AC  H 
Sbjct: 537 FSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHK 596

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           NIE+ E+ ++K+  L P+   N+V  S+I ++ GRW+D + +R++    G KK P CSW+
Sbjct: 597 NIEMGEQVSKKIQLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWV 656

Query: 598 EVDG 601
           E+ G
Sbjct: 657 EISG 660



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 168/375 (44%), Gaps = 14/375 (3%)

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           L   ++    +     VF+ I     V WN +   +       Q + ++  ML  G  P 
Sbjct: 47  LARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPT 106

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
             TF  +LKACSSL  +  G+ +H H     L  +  V T+L+ MY K G L  A   F+
Sbjct: 107 NFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFN 166

Query: 313 SLA--NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATL 370
           S++  ++D+ A+ A+I +++        +    +M+  G+  N  TL S L        L
Sbjct: 167 SISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANAL 226

Query: 371 ANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGY 430
             G+ +H+  ++     ++ + TAL+ MYAKC  +  A  +F     ++   W+ MIGGY
Sbjct: 227 HQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGY 286

Query: 431 VKHGLGEKALEAFRMML-DEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGIT 488
           V H     AL  +  ML   G  P   T   +L AC+ +  ++ GKK H   IK    + 
Sbjct: 287 VLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLD 346

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEK 548
            T+ +   +I +  + G       F+ E  +  + + +  ++  C  +G        AEK
Sbjct: 347 TTVGN--SLISMYAKCGIMDNAVGFLDEM-IAKDTVSYSAIISGCVQNGY-------AEK 396

Query: 549 LLELEPKMESNYVFP 563
            L +  +M+S+ + P
Sbjct: 397 ALLIFRQMQSSGIAP 411



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 2/205 (0%)

Query: 273 KQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQA 332
           +    H   H +  +    T L   +     ++ A   FD +    +  +  +I +YA +
Sbjct: 26  RSFSPHPHPHRVSDSDAAATQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWS 85

Query: 333 GEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS 392
           G  + ++  +  M   G+    FT    L  CS +  L  GRL+H+ A   G  +D++VS
Sbjct: 86  GPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVS 145

Query: 393 TALVAMYAKCGSIDDAEAVFKGSAL--RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
           TAL+ MYAKCG +  A+ +F   +   RD  +WN MI  +  H L  + + +   M   G
Sbjct: 146 TALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAG 205

Query: 451 YVPDEITFVVVLSACSHMGLIEEGK 475
             P+  T V +L        + +GK
Sbjct: 206 VTPNSSTLVSILPTIGQANALHQGK 230


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/600 (34%), Positives = 329/600 (54%), Gaps = 1/600 (0%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           LA+R+F  +P  +V+ WN ++  YA +G     + L+ SM  +  + +K++   VLK  +
Sbjct: 61  LARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACS 120

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
               I+ G  +H+ A   G   D F+  +LVD Y+KCG+   A ++F  +   DVVAW A
Sbjct: 121 GLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNA 180

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I      G C +A ++   M+E  + PN   +  ++    E      G+++H    +  
Sbjct: 181 MIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRS 240

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F++  +VG  L+ MY +   + Y  ++F+ +  ++ VSW+A+   +   +   + L +F 
Sbjct: 241 FDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFD 300

Query: 243 QMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
           QM+LK    P   T   +L+AC+ L+D+  G++LH + IK     + ++G +L+ MY K 
Sbjct: 301 QMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKC 360

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G ++DA   FD +  KD  +++AI++   Q G A +AL  FR M+L GI  +  T+   L
Sbjct: 361 GVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVL 420

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
             CS +A L +G   H   +  G   D  +  AL+ MY+KCG I  A  VF      D  
Sbjct: 421 PACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIV 480

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SWN MI GY  HGLG +AL  F  +L  G  PD+ITF+ +LS+CSH GL+ EG+  F ++
Sbjct: 481 SWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAM 540

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
            + + I P ++H  CM+DILGRAG   E  +FI      P+  +W  LL AC  H NIEL
Sbjct: 541 SRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIEL 600

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
            E+ ++K+  L P+   N+V  S+I +  GRW+D + +R      G+KK P CSWIE++G
Sbjct: 601 GEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEING 660



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 125/384 (32%), Positives = 197/384 (51%), Gaps = 1/384 (0%)

Query: 92  LVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPN 151
           L  +Y  C     A ++F  I +P V+ W  II      G    A  +++ M    V+PN
Sbjct: 49  LTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPN 108

Query: 152 QFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFE 211
           ++    +++A +       G  IH+    +G ESD  V  ALV  Y + G +    R+F 
Sbjct: 109 KYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFS 168

Query: 212 AIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGF 271
           +++H+D V+WNA+ +    Y   D  +++  QM  +G  PN  T + +L        +G 
Sbjct: 169 SMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGH 228

Query: 272 GKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQ 331
           GK LH + ++ S D   VVGT L+DMY K  CL  A   FD +  ++  +++A+I  Y  
Sbjct: 229 GKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVX 288

Query: 332 AGEAEMALKCFRKMRL-EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
           +   + AL+ F +M L + +     TL S L  C+ +  L+ GR LH   +K G +LD+ 
Sbjct: 289 SDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDIL 348

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
           +   L++MYAKCG IDDA   F     +D+ S++ ++ G V++G    AL  FRMM   G
Sbjct: 349 LGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSG 408

Query: 451 YVPDEITFVVVLSACSHMGLIEEG 474
             PD  T + VL ACSH+  ++ G
Sbjct: 409 IDPDLTTMLGVLPACSHLAALQHG 432



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 163/328 (49%), Gaps = 1/328 (0%)

Query: 158 LVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQD 217
           L+ A  ++      + IH    K    +D+ V + L  +Y+   +V    R+F+ I +  
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 218 SVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHA 277
            + WN +   +      D  + +++ ML  G +PN  T+  +LKACS L  +  G ++H+
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 278 HTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEM 337
           H     L+ +  V T+LVD Y K G L +A   F S++++D+ A+ A+I   +  G  + 
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDD 193

Query: 338 ALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVA 397
           A++   +M+ EGI  N  T+   L        L +G+ LH   V+      + V T L+ 
Sbjct: 194 AVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLD 253

Query: 398 MYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF-RMMLDEGYVPDEI 456
           MYAKC  +  A  +F    +R+  SW+ MIGGYV     ++ALE F +M+L +   P  +
Sbjct: 254 MYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPV 313

Query: 457 TFVVVLSACSHMGLIEEGKKHFSSIKKI 484
           T   VL AC+ +  +  G+K    I K+
Sbjct: 314 TLGSVLRACAKLTDLSRGRKLHCYIIKL 341



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 109/221 (49%)

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
            ++ +L+AC     +   K++H H +K++ + +  V   L  +Y     +  A   FD +
Sbjct: 10  NYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEI 69

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
            N  +  +  II +YA  G  + A+  +  M   G++ N++T    L  CS +  + +G 
Sbjct: 70  PNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGV 129

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
            +HS A   G   D+FV TALV  YAKCG + +A+ +F   + RD  +WN MI G   +G
Sbjct: 130 EIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYG 189

Query: 435 LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           L + A++    M +EG  P+  T V VL        +  GK
Sbjct: 190 LCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGK 230



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 2/127 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A+ VF  M   ++VSWNA++ GY   G G + + LF  +  +  K    +   +L  
Sbjct: 464 ISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSS 523

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSC-SLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            ++SG +  G++      R    + +   C  +VD+  + GL D A      +  +PDV 
Sbjct: 524 CSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVR 583

Query: 119 AWGAIIT 125
            W A+++
Sbjct: 584 IWSALLS 590


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/600 (34%), Positives = 329/600 (54%), Gaps = 1/600 (0%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           LA+R+F  +P  +V+ WN ++  YA +G     + L+ SM  +  + +K++   VLK  +
Sbjct: 61  LARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACS 120

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
               I+ G  +H+ A   G   D F+  +LVD Y+KCG+   A ++F  +   DVVAW A
Sbjct: 121 GLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNA 180

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I      G C +A ++   M+E  + PN   +  ++    E      G+++H    +  
Sbjct: 181 MIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRS 240

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F++  +VG  L+ MY +   + Y  ++F+ +  ++ VSW+A+   +   +   + L +F 
Sbjct: 241 FDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFD 300

Query: 243 QMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
           QM+LK    P   T   +L+AC+ L+D+  G++LH + IK     + ++G +L+ MY K 
Sbjct: 301 QMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKC 360

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G ++DA   FD +  KD  +++AI++   Q G A +AL  FR M+L GI  +  T+   L
Sbjct: 361 GVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVL 420

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
             CS +A L +G   H   +  G   D  +  AL+ MY+KCG I  A  VF      D  
Sbjct: 421 PACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIV 480

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SWN MI GY  HGLG +AL  F  +L  G  PD+ITF+ +LS+CSH GL+ EG+  F ++
Sbjct: 481 SWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAM 540

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
            + + I P ++H  CM+DILGRAG   E  +FI      P+  +W  LL AC  H NIEL
Sbjct: 541 SRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIEL 600

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
            E+ ++K+  L P+   N+V  S+I +  GRW+D + +R      G+KK P CSWIE++G
Sbjct: 601 GEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEING 660



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 125/384 (32%), Positives = 197/384 (51%), Gaps = 1/384 (0%)

Query: 92  LVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPN 151
           L  +Y  C     A ++F  I +P V+ W  II      G    A  +++ M    V+PN
Sbjct: 49  LTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPN 108

Query: 152 QFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFE 211
           ++    +++A +       G  IH+    +G ESD  V  ALV  Y + G +    R+F 
Sbjct: 109 KYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFS 168

Query: 212 AIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGF 271
           +++H+D V+WNA+ +    Y   D  +++  QM  +G  PN  T + +L        +G 
Sbjct: 169 SMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGH 228

Query: 272 GKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQ 331
           GK LH + ++ S D   VVGT L+DMY K  CL  A   FD +  ++  +++A+I  Y  
Sbjct: 229 GKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVA 288

Query: 332 AGEAEMALKCFRKMRL-EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
           +   + AL+ F +M L + +     TL S L  C+ +  L+ GR LH   +K G +LD+ 
Sbjct: 289 SDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDIL 348

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
           +   L++MYAKCG IDDA   F     +D+ S++ ++ G V++G    AL  FRMM   G
Sbjct: 349 LGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSG 408

Query: 451 YVPDEITFVVVLSACSHMGLIEEG 474
             PD  T + VL ACSH+  ++ G
Sbjct: 409 IDPDLTTMLGVLPACSHLAALQHG 432



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 183/382 (47%), Gaps = 3/382 (0%)

Query: 158 LVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQD 217
           L+ A  ++      + IH    K    +D+ V + L  +Y+   +V    R+F+ I +  
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 218 SVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHA 277
            + WN +   +      D  + +++ ML  G +PN  T+  +LKACS L  +  G ++H+
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 278 HTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEM 337
           H     L+ +  V T+LVD Y K G L +A   F S++++D+ A+ A+I   +  G  + 
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDD 193

Query: 338 ALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVA 397
           A++   +M+ EGI  N  T+   L        L +G+ LH   V+      + V T L+ 
Sbjct: 194 AVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLD 253

Query: 398 MYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF-RMMLDEGYVPDEI 456
           MYAKC  +  A  +F    +R+  SW+ MIGGYV     ++ALE F +M+L +   P  +
Sbjct: 254 MYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPV 313

Query: 457 TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE 516
           T   VL AC+ +  +  G+K    I K+ G    I     ++ +  + G   +   F  E
Sbjct: 314 TLGSVLRACAKLTDLSRGRKLHCYIIKL-GSVLDILLGNTLLSMYAKCGVIDDAIRFFDE 372

Query: 517 TKLTPNALVWENLLGACSWHGN 538
                +++ +  ++  C  +GN
Sbjct: 373 MN-PKDSVSFSAIVSGCVQNGN 393



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 109/221 (49%)

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
            ++ +L+AC     +   K++H H +K++ + +  V   L  +Y     +  A   FD +
Sbjct: 10  NYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEI 69

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
            N  +  +  II +YA  G  + A+  +  M   G++ N++T    L  CS +  + +G 
Sbjct: 70  PNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGV 129

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
            +HS A   G   D+FV TALV  YAKCG + +A+ +F   + RD  +WN MI G   +G
Sbjct: 130 EIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYG 189

Query: 435 LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           L + A++    M +EG  P+  T V VL        +  GK
Sbjct: 190 LCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGK 230



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 2/127 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A+ VF  M   ++VSWNA++ GY   G G + + LF  +  +  K    +   +L  
Sbjct: 464 ISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSS 523

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSC-SLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            ++SG +  G++      R    + +   C  +VD+  + GL D A      +  +PDV 
Sbjct: 524 CSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVR 583

Query: 119 AWGAIIT 125
            W A+++
Sbjct: 584 IWSALLS 590


>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 734

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/589 (35%), Positives = 324/589 (55%), Gaps = 4/589 (0%)

Query: 17  VSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFS----KFSLSTVLKGFANSGYIKAGQV 72
           VSWN+L+N ++++             + M +  +      +L+ V    +N   + AG+ 
Sbjct: 80  VSWNSLINAFSQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSAASNLSDVVAGKQ 139

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
            H++A++ GC+ D ++  SL++MY K G   +A K+F R+ + + V+W  +I+       
Sbjct: 140 AHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISGYASSDI 199

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
             +A ++F LMR      N+F LTS++ A T       G  +H++  K G  +   V NA
Sbjct: 200 ADKAVEVFELMRREEEIQNEFALTSVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANA 259

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           LV+MY + G +    R FE    ++S++W+A+ + +      D+ L++F +M   G  P+
Sbjct: 260 LVTMYAKCGSLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPS 319

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
             T + ++ ACS L  V  GKQ+H+   K        V +++VDMY K G L DA   F+
Sbjct: 320 EFTLVGVINACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFE 379

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
            +   D+  +T+IIT Y Q G+ E  L  + KM++E +  NE T+AS L  CS +A L  
Sbjct: 380 CVQQPDVVLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRACSSLAALDQ 439

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
           G+ +H+  +K G  L++ + +AL AMY KCGS+DD   +F     RD  SWN MI G  +
Sbjct: 440 GKQMHARIIKYGFKLEVPIGSALSAMYTKCGSLDDGYLIFWRMPSRDVISWNAMISGLSQ 499

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK 492
           +G G KALE F  ML EG  PD +TFV +LSACSHMGL++ G ++F  +   + I P ++
Sbjct: 500 NGHGNKALELFEKMLLEGIKPDPVTFVNLLSACSHMGLVDRGWEYFKMMFDEFNIAPMVE 559

Query: 493 HFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLEL 552
           H+ACM+DIL RAGK  E + FI    +     +W  LLGAC  H N EL     EKL+EL
Sbjct: 560 HYACMVDILSRAGKLNEAKEFIESATVDHGLCLWRILLGACKNHRNYELGVYAGEKLVEL 619

Query: 553 EPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
                S YV  S I    G   +   VR ++ ++G+ KEP CSWIE+ G
Sbjct: 620 GSPESSAYVLLSSIYTALGDRENVERVRRIMKARGVNKEPGCSWIELKG 668



 Score =  224 bits (572), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 148/507 (29%), Positives = 252/507 (49%), Gaps = 15/507 (2%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI--KDPDVVAWGAII 124
           I  G+ +HA  ++ G     +++ + +++Y+K     +AL +F  I   D D V+W ++I
Sbjct: 27  ILKGRTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHALTLFDSINDNDKDDVSWNSLI 86

Query: 125 TCLDQQGCCQE---AAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
               Q         A  +F  +MR ++V PN   L  +  A +   D   G+  H+V  K
Sbjct: 87  NAFSQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSAASNLSDVVAGKQAHSVAVK 146

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G   D  VG++L++MY + G V    ++F+ +  +++VSW  + S +   +  D+ + +
Sbjct: 147 TGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISGYASSDIADKAVEV 206

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  M  +    N      +L A +S   V  G+Q+H+  IK+ L     V  +LV MY K
Sbjct: 207 FELMRREEEIQNEFALTSVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAK 266

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L+DA   F+   +K+   ++A++T YAQ G+++ ALK F KM   G+  +EFTL   
Sbjct: 267 CGSLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGV 326

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           +N CS +  +  G+ +HS A K G  L ++V +A+V MYAKCGS+ DA   F+     D 
Sbjct: 327 INACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFECVQQPDV 386

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
             W  +I GYV++G  E  L  +  M  E  +P+E+T   VL ACS +  +++GK+  + 
Sbjct: 387 VLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRACSSLAALDQGKQMHAR 446

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           I K YG    +   + +  +  + G   +    I     + + + W  ++   S +G+  
Sbjct: 447 IIK-YGFKLEVPIGSALSAMYTKCGSLDD-GYLIFWRMPSRDVISWNAMISGLSQNGH-- 502

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDIS 567
                  K LEL  KM    + P  ++
Sbjct: 503 -----GNKALELFEKMLLEGIKPDPVT 524



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 137/487 (28%), Positives = 253/487 (51%), Gaps = 4/487 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F  MPE N VSW  +++GYA S    K + +F  M+  E+  ++F+L++VL    +
Sbjct: 172 ARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFELMRREEEIQNEFALTSVLSALTS 231

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
             ++  G+ VH++AI+ G      ++ +LV MY+KCG  D+A++ F    D + + W A+
Sbjct: 232 DVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTFEFSGDKNSITWSAM 291

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +T   Q G   +A K+FN M  S V P++F L  ++ A ++      G+ +H+   K GF
Sbjct: 292 VTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAVVEGKQMHSFAFKLGF 351

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
                V +A+V MY + G ++   + FE +   D V W ++ + +      + GL ++ +
Sbjct: 352 GLQLYVLSAVVDMYAKCGSLADARKGFECVQQPDVVLWTSIITGYVQNGDYEGGLNLYGK 411

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M ++   PN  T   +L+ACSSL+ +  GKQ+HA  IK+       +G++L  MY K G 
Sbjct: 412 MQMERVIPNELTMASVLRACSSLAALDQGKQMHARIIKYGFKLEVPIGSALSAMYTKCGS 471

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L+D  + F  + ++D+ ++ A+I+  +Q G    AL+ F KM LEGIK +  T  + L+ 
Sbjct: 472 LDDGYLIFWRMPSRDVISWNAMISGLSQNGHGNKALELFEKMLLEGIKPDPVTFVNLLSA 531

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTA-LVAMYAKCGSIDDAEAVFKGSAL-RDTA 421
           CS +  +  G     +     ++  M    A +V + ++ G +++A+   + + +     
Sbjct: 532 CSHMGLVDRGWEYFKMMFDEFNIAPMVEHYACMVDILSRAGKLNEAKEFIESATVDHGLC 591

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
            W +++G    H   E  + A   +++ G  P+   +V++ S  + +G   E  +    I
Sbjct: 592 LWRILLGACKNHRNYELGVYAGEKLVELGS-PESSAYVLLSSIYTALG-DRENVERVRRI 649

Query: 482 KKIYGIT 488
            K  G+ 
Sbjct: 650 MKARGVN 656



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 161/331 (48%), Gaps = 19/331 (5%)

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
           L K F P     +  L  C+   ++  G+ LHA  +K     +  V  + +++Y K+  L
Sbjct: 3   LPKIFPPQHRQLLQDLIECTHNKNILKGRTLHARILKTGSISSIYVTNTFLNLYAKTNHL 62

Query: 305 EDAGVAFDSL--ANKDLFAYTAIITSYAQ---AGEAEMALKCFRK-MRLEGIKSNEFTLA 358
             A   FDS+   +KD  ++ ++I +++Q   +  +  A+  FR+ MR   +  N  TLA
Sbjct: 63  SHALTLFDSINDNDKDDVSWNSLINAFSQNHSSSSSSFAISLFRRMMRANNVIPNAHTLA 122

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
              +  S ++ +  G+  HS+AVKTG   D++V ++L+ MY K G + DA  +F     R
Sbjct: 123 GVFSAASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRMPER 182

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-H 477
           +T SW  MI GY    + +KA+E F +M  E  + +E     VLSA +    +  G++ H
Sbjct: 183 NTVSWATMISGYASSDIADKAVEVFELMRREEEIQNEFALTSVLSALTSDVFVYTGRQVH 242

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTE-IENFITETKLTPNALVWENLLGACSWH 536
             +IK   G+   +     ++ +  + G   + +  F  E     N++ W  ++   +  
Sbjct: 243 SLAIKN--GLLAIVSVANALVTMYAKCGSLDDAVRTF--EFSGDKNSITWSAMVTGYAQG 298

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           G       D++K L+L  KM S+ V PS+ +
Sbjct: 299 G-------DSDKALKLFNKMHSSGVLPSEFT 322



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 95/213 (44%), Gaps = 13/213 (6%)

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK--GSALRDTA 421
           C+    +  GR LH+  +KTG +  ++V+   + +YAK   +  A  +F       +D  
Sbjct: 21  CTHNKNILKGRTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHALTLFDSINDNDKDDV 80

Query: 422 SWNMMIGGYVKHGLGEK---ALEAF-RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           SWN +I  + ++        A+  F RMM     +P+  T   V SA S++  +  GK+ 
Sbjct: 81  SWNSLINAFSQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSAASNLSDVVAGKQA 140

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
            S   K  G +  +   + ++++  + G   +            N + W  ++   S + 
Sbjct: 141 HSVAVKT-GCSGDVYVGSSLLNMYCKTGFVFDARKLFDRMP-ERNTVSWATMI---SGYA 195

Query: 538 NIELDEKDAE--KLLELEPKMESNYVFPSDISA 568
           + ++ +K  E  +L+  E ++++ +   S +SA
Sbjct: 196 SSDIADKAVEVFELMRREEEIQNEFALTSVLSA 228


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/602 (35%), Positives = 342/602 (56%), Gaps = 8/602 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E  +RVF  M   NVVSW +LL GY ++G  ++ + LF  M+    K + F+ + VL G
Sbjct: 143 VEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGG 202

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A  G ++ G  VH M I+ G     F+  S+V+MYSK  +  +A  VF  +++ + V+W
Sbjct: 203 LAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSW 262

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I      G   EA ++F  MR   VK  Q +  ++++      +    + +H  + K
Sbjct: 263 NSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIK 322

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH--QDSVSWNALFSRFQDYESPDQGL 238
            G + D  +  AL+  Y +   +    ++F  + H  Q+ VSW A+ S +      D+ +
Sbjct: 323 NGSDFDLNIKTALMVAYSKCSEIDDAFKLF-CMMHGVQNVVSWTAIISGYVQNGRTDRAM 381

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            +F QM  +G +PN  T+  IL A +++S      Q+HA  +K + + +  VGT+L D Y
Sbjct: 382 NLFCQMRREGVRPNHFTYSTILTANAAVSP----SQIHALVVKTNYENSPSVGTALSDSY 437

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G   +A   F+ +  KD+ A++A+++ YAQ G+ E A+K F ++  EG++ NEFT +
Sbjct: 438 SKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFS 497

Query: 359 SCLNGCS-PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           S LN C+ P A++  G+  HS ++K+G    + VS+ALV MYAK G+I+ A  VFK    
Sbjct: 498 SVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVD 557

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           RD  SWN MI GY +HG G+K+L+ F  M  +    D ITF+ V+SAC+H GL+ EG+++
Sbjct: 558 RDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRY 617

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F  + K Y I PT++H++CM+D+  RAG   +  + I +      A +W  LL AC  H 
Sbjct: 618 FDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHL 677

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           N++L E  AEKL+ L+P+  + YV  S+I AT G W + + VR L+  + +KKE   SWI
Sbjct: 678 NVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWI 737

Query: 598 EV 599
           EV
Sbjct: 738 EV 739



 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 155/557 (27%), Positives = 291/557 (52%), Gaps = 14/557 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           ++++F   P+  +   N LL  ++ +   ++ ++LF  ++         SLS VLK    
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G+ VH   I+ G   D  +  SLVDMY K    ++  +VF  ++  +VV+W ++
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    Q G  ++A K+F+ M+   +KPN F   +++      G    G  +H ++ K G 
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGL 224

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           +S   VGN++V+MY ++  VS    VF+++ ++++VSWN++ + F       +   +FY+
Sbjct: 225 DSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYR 284

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M L+G K     F  ++K C+++ ++ F KQLH   IK+  D +  + T+L+  Y K   
Sbjct: 285 MRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSE 344

Query: 304 LEDAGVAFDSLAN-KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
           ++DA   F  +   +++ ++TAII+ Y Q G  + A+  F +MR EG++ N FT ++ L 
Sbjct: 345 IDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILT 404

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
             + V+       +H++ VKT +     V TAL   Y+K G  ++A  +F+    +D  +
Sbjct: 405 ANAAVSP----SQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVA 460

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC-SHMGLIEEGKK-HFSS 480
           W+ M+ GY + G  E A++ F  +  EG  P+E TF  VL+AC +    +E+GK+ H  S
Sbjct: 461 WSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCS 520

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG--- 537
           IK   G +  +   + ++ +  + G   E  N + + ++  + + W +++   + HG   
Sbjct: 521 IKS--GFSNALCVSSALVTMYAKRGNI-ESANEVFKRQVDRDLVSWNSMISGYAQHGCGK 577

Query: 538 -NIELDEKDAEKLLELE 553
            ++++ E+   K LEL+
Sbjct: 578 KSLKIFEEMRSKNLELD 594



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 89/264 (33%), Positives = 137/264 (51%)

Query: 205 YGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACS 264
           +  ++F+    Q     N L   F   +   + L +F  +   G   +  +   +LK C 
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCG 103

Query: 265 SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA 324
            L D   GKQ+H   IK     +  VGTSLVDMY K+  +ED    FD +  K++ ++T+
Sbjct: 104 CLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTS 163

Query: 325 IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           ++  Y Q G  E ALK F +M+LEGIK N FT A+ L G +    +  G  +H++ +K+G
Sbjct: 164 LLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSG 223

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
               +FV  ++V MY+K   + DA+AVF     R+  SWN MI G+V +GL  +A E F 
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFY 283

Query: 445 MMLDEGYVPDEITFVVVLSACSHM 468
            M  EG    +  F  V+  C+++
Sbjct: 284 RMRLEGVKLTQTIFATVIKLCANI 307


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 224/597 (37%), Positives = 329/597 (55%), Gaps = 6/597 (1%)

Query: 5   KRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANS 64
           +RVF  M E NVVSW +LL GY+ +G    V  LFC M+      +++++STV+    N 
Sbjct: 148 RRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNE 207

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
           G +  G  VHAM ++ G      +  SL+ +YS+ G+  +A  VF +++  D V W ++I
Sbjct: 208 GVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMI 267

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
               + G   E  +IFN M+ + VKP      S++++     +    + +     K GF 
Sbjct: 268 AGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFT 327

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAH-QDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           +D +V  AL+    +   +     +F  +   ++ VSW A+ S        DQ + +F Q
Sbjct: 328 TDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQ 387

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +G KPN  T+  IL     +    F  ++HA  IK + + +  VGT+L+D Y K G 
Sbjct: 388 MRREGVKPNHFTYSAILTVHYPV----FVSEMHAEVIKTNYERSSSVGTALLDAYVKLGN 443

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
             DA   F+ +  KDL A++A++  YAQ GE E A K F ++  EGIK NEFT +S +N 
Sbjct: 444 TIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINA 503

Query: 364 C-SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
           C SP A    G+  H+ A+K      + VS+ALV MYAK G+ID A  VFK    RD  S
Sbjct: 504 CASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVS 563

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN MI GY +HG  +KALE F  M       D +TF+ V++AC+H GL+E+G+K+F+S+ 
Sbjct: 564 WNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMI 623

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
             + I PT+KH++CMID+  RAG   +    I E    P A VW  LLGA   H N+EL 
Sbjct: 624 NDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVELG 683

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           E  AEKL+ L+P+  + YV  S++ A  G W + + VR L+  + +KKEP  SWIEV
Sbjct: 684 ELAAEKLISLQPEDSAAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEV 740



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 149/563 (26%), Positives = 267/563 (47%), Gaps = 23/563 (4%)

Query: 2   ELAKRVFKSMPE--LNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
            +A  +F  +P     +   N LL  Y+     ++ ++LF S+     +  + +LS V  
Sbjct: 42  HIAHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFN 101

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             A S   K G+ VH   ++ G      +  SLVDMY K    ++  +VF  + + +VV+
Sbjct: 102 ICAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVS 161

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W +++      G      ++F  M+   V PN++ +++++ A    G    G  +HA++ 
Sbjct: 162 WTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVV 221

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K+GFE    V N+L+S+Y   G +     VF+ +  +D V+WN++ + +       +   
Sbjct: 222 KHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFE 281

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           IF +M L G KP   TF  ++K+C+SL ++   K +    +K     + +V T+L+    
Sbjct: 282 IFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALS 341

Query: 300 KSGCLEDAGVAFDSLAN-KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
           K   ++DA   F  +   K++ ++TA+I+   Q G  + A+  F +MR EG+K N FT +
Sbjct: 342 KCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYS 401

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           + L    PV        +H+  +KT +     V TAL+  Y K G+  DA  VF+    +
Sbjct: 402 AILTVHYPVFVSE----MHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAK 457

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D  +W+ M+ GY + G  E+A + F  ++ EG  P+E TF  V++AC+      E  K F
Sbjct: 458 DLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQF 517

Query: 479 SSIKKIYGITPTIKHFAC----MIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
            +    Y I   + +  C    ++ +  + G            K   + + W +++   S
Sbjct: 518 HA----YAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQK-ERDLVSWNSMISGYS 572

Query: 535 WHGNIELDEKDAEKLLELEPKME 557
            HG        A+K LE+  +M+
Sbjct: 573 QHG-------QAKKALEVFDEMQ 588



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 61/125 (48%), Gaps = 6/125 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A  VFK   E ++VSWN++++GY++ G  +K + +F  M+         +   V+    +
Sbjct: 549 AHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTH 608

Query: 64  SGYIKAGQVVHAMAI---RLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVVA 119
           +G ++ GQ      I    +   + K  SC ++D+YS+ G+ + A+ +   +   P    
Sbjct: 609 AGLVEKGQKYFNSMINDHHINPTM-KHYSC-MIDLYSRAGMLEKAMGIINEMPFPPGATV 666

Query: 120 WGAII 124
           W  ++
Sbjct: 667 WRTLL 671


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/596 (36%), Positives = 337/596 (56%), Gaps = 8/596 (1%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           VF+ MP+ NVV+W +LL G A +    +VM LF  M+      + F+ ++VL   A+ G 
Sbjct: 157 VFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGA 216

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +  GQ VHA +++ GC    F+  SL++MY+KCGL ++A  VF  ++  D+V+W  ++  
Sbjct: 217 LDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAG 276

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
           L    C  EA ++F+  R +  K  Q    ++++             +H+ + K+GF   
Sbjct: 277 LQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLT 336

Query: 187 TLVGNALVSMYMENGRVSYGSRVFE-AIAHQDSVSWNALFSR-FQDYESPDQGLRIFYQM 244
             V  AL   Y + G ++    +F      ++ VSW A+ S   Q+ + P   + +F +M
Sbjct: 337 GNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIP-LAVVLFSRM 395

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
                 PN  T+  +LKA  S+       Q+HA  IK +      VGT+L+  Y K G  
Sbjct: 396 REDRVMPNEFTYSAMLKASLSI----LPPQIHAQVIKTNYQHIPFVGTALLASYSKFGST 451

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
           EDA   F  +  KD+ A++A+++ +AQAG+ E A   F KM ++GIK NEFT++S ++ C
Sbjct: 452 EDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDAC 511

Query: 365 S-PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           + P A +  GR  H+I++K  +   + VS+ALV+MY++ G+ID A+ VF+    RD  SW
Sbjct: 512 ACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSW 571

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N MI GY +HG   KA+E FR M   G   D +TF+ V+  C+H GL+ EG+++F S+ +
Sbjct: 572 NSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVR 631

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            + I PT++H+ACM+D+  RAGK  E  + I +      A+VW  LLGAC  H N+EL +
Sbjct: 632 DHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGK 691

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
             A+KLL LEP   S YV  S+I A  G+W +   VR L+  + +KKE  CSWI++
Sbjct: 692 FSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQI 747



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 145/525 (27%), Positives = 245/525 (46%), Gaps = 11/525 (2%)

Query: 17  VSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAM 76
           V  N +L  YA  G   +V+  F   +         +LS VLK   +      G+ +H +
Sbjct: 65  VGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCL 124

Query: 77  AIRLGCALDK---FLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCC 133
            ++  C  D+       SLVDMY KCG     ++VF  +   +VV W +++T        
Sbjct: 125 CVK--CGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMH 182

Query: 134 QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNAL 193
            E   +F  MR   + PN F   S++ A    G    G+ +HA   K+G  S   V N+L
Sbjct: 183 SEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSL 242

Query: 194 VSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
           ++MY + G V     VF  +  +D VSWN L +  Q  E   + L++F++      K   
Sbjct: 243 MNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQ 302

Query: 254 CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD- 312
            T+  ++K C++L  +   +QLH+  +KH       V T+L D Y K G L DA   F  
Sbjct: 303 STYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSM 362

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
           +  ++++ ++TAII+   Q G+  +A+  F +MR + +  NEFT ++ L     +     
Sbjct: 363 TTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQ- 421

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
              +H+  +KT +    FV TAL+A Y+K GS +DA ++FK    +D  +W+ M+  + +
Sbjct: 422 ---IHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQ 478

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK 492
            G  E A   F  M  +G  P+E T   V+ AC+      +  + F +I   Y     I 
Sbjct: 479 AGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAIC 538

Query: 493 HFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
             + ++ +  R G     +  + E +   + + W +++   + HG
Sbjct: 539 VSSALVSMYSRKGNIDSAQ-IVFERQTDRDLVSWNSMISGYAQHG 582



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 216/437 (49%), Gaps = 8/437 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E AK VF  M   ++VSWN L+ G   +    + + LF   +    K ++ + +TV+K 
Sbjct: 252 VEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKL 311

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF-YRIKDPDVVA 119
            AN   +   + +H+  ++ G  L   +  +L D YSKCG   +AL +F       +VV+
Sbjct: 312 CANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVS 371

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W AII+   Q G    A  +F+ MRE  V PN+F  +++++A+           IHA + 
Sbjct: 372 WTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSI----LPPQIHAQVI 427

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K  ++    VG AL++ Y + G       +F+ I  +D V+W+A+ S        +    
Sbjct: 428 KTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATY 487

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLS-DVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           +F +M ++G KPN  T   ++ AC+  S  V  G+Q HA +IK+       V ++LV MY
Sbjct: 488 LFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMY 547

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            + G ++ A + F+   ++DL ++ ++I+ YAQ G +  A++ FR+M   GI+ +  T  
Sbjct: 548 SRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFL 607

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA-LVAMYAKCGSIDDAEAVFKGSAL 417
           + + GC+    +  G+      V+   +       A +V +Y++ G +D+  ++ +    
Sbjct: 608 AVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPF 667

Query: 418 RDTA-SWNMMIGGYVKH 433
              A  W  ++G    H
Sbjct: 668 PAGAMVWRTLLGACRVH 684


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/597 (33%), Positives = 334/597 (55%), Gaps = 1/597 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMK-DMEKKFSKFSLSTVLKGFA 62
           A+R+F  M + + +SW  L++GY  + D  + + LF +M+ +   +   F LS   K   
Sbjct: 68  ARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKACG 127

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
            +  +  G+++H  A++ G     F+  +L+DMY+K G      +VF+ +   +VV+W A
Sbjct: 128 LNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTA 187

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           IIT L + G  +EA   F+ M  S V+ + +     ++A  ++G    G  IHA   K G
Sbjct: 188 IITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKG 247

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F+  + V N L +MY + G++ YG  +FE ++ +D VSW  + +        +  ++ F 
Sbjct: 248 FDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFI 307

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M      PN  TF  ++  C++L+ + +G+QLHA  +   L  +  V  S++ MY K G
Sbjct: 308 RMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCG 367

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            L  + V F  +  +D+ +++ II  Y+Q G    A +    MR+EG K  EF LAS L+
Sbjct: 368 QLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLS 427

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C  +A L +G+ LH+  +  G      V +AL+ MY KCGSI++A  +F  +   D  S
Sbjct: 428 ACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVS 487

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           W  MI GY +HG   + ++ F  +   G  PD +TF+ VLSACSH GL++ G ++F+++ 
Sbjct: 488 WTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFRYFNAMS 547

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           K Y I+P+ +H+ CMID+L RAG+ ++ E+ I       + +VW  LL AC  HG++E  
Sbjct: 548 KKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERG 607

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            + AE++L+LEP     ++  ++I A++G+W + + +R L+ S+G+ KEP  SWI+V
Sbjct: 608 RRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEPGWSWIKV 664



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 188/377 (49%), Gaps = 8/377 (2%)

Query: 164 ETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNA 223
           E  +    ++IH +      ++D    N  +   ++ G +    R+F+ ++ +D +SW  
Sbjct: 31  ERSNDNLSQNIHFI-----SQTDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTT 85

Query: 224 LFSRFQDYESPDQGLRIFYQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKH 282
           L S + +     + L +F  M ++ G + +     +  KAC   SDV +G+ LH + +K 
Sbjct: 86  LISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKT 145

Query: 283 SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCF 342
            L  +  VG++L+DMY K+G + +    F  +  +++ ++TAIIT   +AG  + AL  F
Sbjct: 146 GLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYF 205

Query: 343 RKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC 402
            +M    ++ + +T A  L  C+    L  GR +H+ A+K G  +  FV+  L  MY KC
Sbjct: 206 SEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKC 265

Query: 403 GSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVL 462
           G ++    +F+  ++RD  SW  +I   V+ G  E A++AF  M +    P+E TF  V+
Sbjct: 266 GKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVI 325

Query: 463 SACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPN 522
           S C+++  IE G++  + I  + G+  ++     ++ +  + G+ T   + I       +
Sbjct: 326 SGCANLARIEWGEQLHALILHL-GLAASLSVENSIMTMYAKCGQLTS-SSVIFHEMTRRD 383

Query: 523 ALVWENLLGACSWHGNI 539
            + W  ++   S  G++
Sbjct: 384 IVSWSTIIAGYSQGGHV 400



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 183/352 (51%), Gaps = 5/352 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E    +F+ M   +VVSW  ++    + G  +  +  F  M++ +   ++++ + V+ G
Sbjct: 268 LEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISG 327

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            AN   I+ G+ +HA+ + LG A    +  S++ MY+KCG   ++  +F+ +   D+V+W
Sbjct: 328 CANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSW 387

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             II    Q G   EA ++ + MR    KP +F L S++ A         G+ +HA +  
Sbjct: 388 STIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLS 447

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G E   +V +AL++MY + G +   SR+F+A  + D VSW A+ + + ++    + + +
Sbjct: 448 IGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDL 507

Query: 241 FYQMLLKGFKPNMCTFIVILKACS--SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           F ++   G +P+  TFI +L ACS   L D+GF +  +A + K+ +  +      ++D+ 
Sbjct: 508 FEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGF-RYFNAMSKKYQISPSKEHYGCMIDLL 566

Query: 299 DKSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCF-RKMRLE 348
            ++G L DA    +++  ++D   ++ ++ +    G+ E   +   R ++LE
Sbjct: 567 CRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLE 618


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 220/598 (36%), Positives = 341/598 (57%), Gaps = 8/598 (1%)

Query: 5   KRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANS 64
           ++VF+ M + NVV+W +LL GY ++G    VM LF  M+      + F+ S+VL   A+ 
Sbjct: 111 RKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQ 170

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
           G +  GQ VHA +I+ GC    F+  SL++MY+KCGL + A  VF R++  D+V+W  ++
Sbjct: 171 GMVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLM 230

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
             L   G   EA ++F+  R S     +   ++++              +H+ + K+GF 
Sbjct: 231 AGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFH 290

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALFSR-FQDYESPDQGLRIFY 242
           S   V  AL+  Y + G++     VF  ++  Q+ VSW A+     Q+ + P     +F 
Sbjct: 291 SYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIP-LAAALFS 349

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M   G  PN  T+  IL    ++S+  F  Q+HA  IK + +    VGT+L+  Y K  
Sbjct: 350 RMREDGVAPNDLTYSTIL----TVSEASFPPQIHAQVIKTNYECTPTVGTALMVSYSKLC 405

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
             E+A   F  +  KD+ +++A++T YAQAG+   A   F KM + G+K NEFT++S ++
Sbjct: 406 STEEALSIFKMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAID 465

Query: 363 GC-SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
            C SP A +  GR  H+I++K      + VS+ALV+MYA+ GSI++A+ VF+    RD  
Sbjct: 466 ACASPAAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIENAQCVFERQTDRDLL 525

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SWN M+ GY +HG  +KAL+ FR M  EG   D +TF+ V+  C+H GL+EEG+++F  +
Sbjct: 526 SWNSMLSGYAQHGYSQKALDVFRQMEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQYFDLM 585

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
            + YGITPT+ H+ACM+D+  RAGK  E  + I          +W  LLGAC  H N+EL
Sbjct: 586 VRDYGITPTMDHYACMVDLYSRAGKLDETMSLIEGMPFPAGPTIWRALLGACRVHKNVEL 645

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            +  AEKLL LEP   + YV  S+I +  G+W +   VR L+ ++ ++KE  CSWI++
Sbjct: 646 GKLAAEKLLSLEPLDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVRKEAGCSWIQI 703



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/448 (27%), Positives = 219/448 (48%), Gaps = 11/448 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ VF  M   ++VSWN L+ G   +G   + + LF   +      ++ + STV+  
Sbjct: 208 VEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINL 267

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVVA 119
            AN  ++   + +H+  ++ G      +  +L+D Y+K G  D AL VF  +    +VV+
Sbjct: 268 CANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVS 327

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W A+I    Q G    AA +F+ MRE  V PN    ++++  +  +   +    IHA + 
Sbjct: 328 WTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTILTVSEASFPPQ----IHAQVI 383

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K  +E    VG AL+  Y +         +F+ I  +D VSW+A+ + +      +    
Sbjct: 384 KTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDCNGATN 443

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSS-LSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            F +M + G KPN  T    + AC+S  + V  G+Q HA +IKH       V ++LV MY
Sbjct: 444 AFIKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQFHAISIKHRCHDALCVSSALVSMY 503

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            + G +E+A   F+   ++DL ++ ++++ YAQ G ++ AL  FR+M +EGI  +  T  
Sbjct: 504 ARKGSIENAQCVFERQTDRDLLSWNSMLSGYAQHGYSQKALDVFRQMEVEGIDMDGLTFL 563

Query: 359 SCLNGCSPVATLANGRLLHSIAVKT-GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           S + GC+    +  G+    + V+  G    M     +V +Y++ G +D+  ++ +G   
Sbjct: 564 SVIMGCAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVDLYSRAGKLDETMSLIEGMPF 623

Query: 418 RDTAS-WNMMIGGYVKHG---LGEKALE 441
               + W  ++G    H    LG+ A E
Sbjct: 624 PAGPTIWRALLGACRVHKNVELGKLAAE 651



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 130/490 (26%), Positives = 230/490 (46%), Gaps = 14/490 (2%)

Query: 70  GQVVHAMAIRLGCAL-DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLD 128
           G+ +HA+ +R G    D  +  SLVDMY       +  KVF  +   +VV W +++T   
Sbjct: 74  GKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYI 133

Query: 129 QQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTL 188
           Q G   +   +F  MR   V PN F  +S++      G    G+ +HA   K+G  S   
Sbjct: 134 QAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVF 193

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG 248
           V N+L++MY + G V     VF  +  +D VSWN L +         + L++F+      
Sbjct: 194 VCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSI 253

Query: 249 FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
                 T+  ++  C++L  +G  +QLH+  +KH       V T+L+D Y+K+G L+ A 
Sbjct: 254 TMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKAL 313

Query: 309 VAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367
             F  ++ ++++ ++TA+I    Q G+  +A   F +MR +G+  N+ T ++ L     V
Sbjct: 314 DVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTILT----V 369

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
           +  +    +H+  +KT +     V TAL+  Y+K  S ++A ++FK    +D  SW+ M+
Sbjct: 370 SEASFPPQIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAML 429

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGI 487
             Y + G    A  AF  M   G  P+E T    + AC+      +  + F +I   +  
Sbjct: 430 TCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQFHAISIKHRC 489

Query: 488 TPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAE 547
              +   + ++ +  R G   E    + E +   + L W ++L   + HG        ++
Sbjct: 490 HDALCVSSALVSMYARKGSI-ENAQCVFERQTDRDLLSWNSMLSGYAQHGY-------SQ 541

Query: 548 KLLELEPKME 557
           K L++  +ME
Sbjct: 542 KALDVFRQME 551



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 156/310 (50%), Gaps = 9/310 (2%)

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLD-GNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK 317
           I+K C S+ D   GKQLHA  ++   D G+  VGTSLVDMY     + D    F+ +  +
Sbjct: 61  IIKICGSVPDRVLGKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKR 120

Query: 318 DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLH 377
           ++  +T+++T Y QAG     +  F +MR EG+  N FT +S L+  +    +  G+ +H
Sbjct: 121 NVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVH 180

Query: 378 SIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGE 437
           + ++K G    +FV  +L+ MYAKCG +++A  VF     RD  SWN ++ G V +G   
Sbjct: 181 AQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDL 240

Query: 438 KALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACM 497
           +AL+ F        +  E T+  V++ C+++  +   ++  SS+ K +G          +
Sbjct: 241 EALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLK-HGFHSYGNVMTAL 299

Query: 498 IDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKME 557
           +D   +AG+  +  +       + N + W  ++  C  +G+I L          L  +M 
Sbjct: 300 MDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAA-------LFSRMR 352

Query: 558 SNYVFPSDIS 567
            + V P+D++
Sbjct: 353 EDGVAPNDLT 362


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/596 (36%), Positives = 337/596 (56%), Gaps = 8/596 (1%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           VF+ MP+ NVV+W +LL G A +    +VM LF  M+      + F+ ++VL   A+ G 
Sbjct: 157 VFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGA 216

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +  GQ VHA +++ GC    F+  SL++MY+KCGL ++A  VF  ++  D+V+W  ++  
Sbjct: 217 LDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAG 276

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
           L    C  EA ++F+  R +  K  Q    ++++             +H+ + K+GF   
Sbjct: 277 LQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLT 336

Query: 187 TLVGNALVSMYMENGRVSYGSRVFE-AIAHQDSVSWNALFSR-FQDYESPDQGLRIFYQM 244
             V  AL   Y + G ++    +F      ++ VSW A+ S   Q+ + P   + +F +M
Sbjct: 337 GNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIP-LAVVLFSRM 395

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
                 PN  T+  +LKA  S+       Q+HA  IK +      VGT+L+  Y K G  
Sbjct: 396 REDRVMPNEFTYSAMLKASLSI----LPPQIHAQVIKTNYQHIPSVGTALLASYSKFGST 451

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
           EDA   F  +  KD+ A++A+++ +AQAG+ E A   F KM ++GIK NEFT++S ++ C
Sbjct: 452 EDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDAC 511

Query: 365 S-PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           + P A +  GR  H+I++K  +   + VS+ALV+MY++ G+ID A+ VF+    RD  SW
Sbjct: 512 ACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSW 571

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N MI GY +HG   KA+E FR M   G   D +TF+ V+  C+H GL+ EG+++F S+ +
Sbjct: 572 NSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVR 631

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            + I PT++H+ACM+D+  RAGK  E  + I +      A+VW  LLGAC  H N+EL +
Sbjct: 632 DHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGK 691

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
             A+KLL LEP   S YV  S+I A  G+W +   VR L+  + +KKE  CSWI++
Sbjct: 692 FSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQI 747



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 144/525 (27%), Positives = 244/525 (46%), Gaps = 11/525 (2%)

Query: 17  VSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAM 76
           V  N +L  YA  G   +V+  F   +         +LS VLK   +      G+ +H +
Sbjct: 65  VGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCL 124

Query: 77  AIRLGCALDK---FLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCC 133
            ++  C  D+       SLVDMY KCG     ++VF  +   +VV W +++T        
Sbjct: 125 CVK--CGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMH 182

Query: 134 QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNAL 193
            E   +F  MR   + PN F   S++ A    G    G+ +HA   K+G  S   V N+L
Sbjct: 183 SEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSL 242

Query: 194 VSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
           ++MY + G V     VF  +  +D VSWN L +  Q  E   + L++F++      K   
Sbjct: 243 MNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQ 302

Query: 254 CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD- 312
            T+  ++K C++L  +   +QLH+  +KH       V T+L D Y K G L DA   F  
Sbjct: 303 STYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSM 362

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
           +  ++++ ++TAII+   Q G+  +A+  F +MR + +  NEFT ++ L     +     
Sbjct: 363 TTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQ- 421

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
              +H+  +KT +     V TAL+A Y+K GS +DA ++FK    +D  +W+ M+  + +
Sbjct: 422 ---IHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQ 478

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK 492
            G  E A   F  M  +G  P+E T   V+ AC+      +  + F +I   Y     I 
Sbjct: 479 AGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAIC 538

Query: 493 HFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
             + ++ +  R G     +  + E +   + + W +++   + HG
Sbjct: 539 VSSALVSMYSRKGNIDSAQ-IVFERQTDRDLVSWNSMISGYAQHG 582



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 216/437 (49%), Gaps = 8/437 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E AK VF  M   ++VSWN L+ G   +    + + LF   +    K ++ + +TV+K 
Sbjct: 252 VEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKL 311

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF-YRIKDPDVVA 119
            AN   +   + +H+  ++ G  L   +  +L D YSKCG   +AL +F       +VV+
Sbjct: 312 CANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVS 371

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W AII+   Q G    A  +F+ MRE  V PN+F  +++++A+           IHA + 
Sbjct: 372 WTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSI----LPPQIHAQVI 427

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K  ++    VG AL++ Y + G       +F+ I  +D V+W+A+ S        +    
Sbjct: 428 KTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATY 487

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLS-DVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           +F +M ++G KPN  T   ++ AC+  S  V  G+Q HA +IK+       V ++LV MY
Sbjct: 488 LFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMY 547

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            + G ++ A + F+   ++DL ++ ++I+ YAQ G +  A++ FR+M   GI+ +  T  
Sbjct: 548 SRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFL 607

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA-LVAMYAKCGSIDDAEAVFKGSAL 417
           + + GC+    +  G+      V+   +       A +V +Y++ G +D+  ++ +    
Sbjct: 608 AVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPF 667

Query: 418 RDTA-SWNMMIGGYVKH 433
              A  W  ++G    H
Sbjct: 668 PAGAMVWRTLLGACRVH 684


>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1736

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 226/604 (37%), Positives = 337/604 (55%), Gaps = 12/604 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AK +F+ M   NVVS N L+ G  +   G+    +F  MKD+    S  S   +L  F+ 
Sbjct: 336 AKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSD-SYVVLLSAFSE 394

Query: 64  SGYI----KAGQVVHAMAIRLGCALDKF-LSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
              +    + G+ VHA  IR G   +K  +   LV+MY+K G   +A  VF  + + D V
Sbjct: 395 FSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSV 454

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +W ++I+ LDQ  C ++AA+ F+ MR +   P+ F L S + +    G    GE IH   
Sbjct: 455 SWNSLISGLDQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDG 514

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE-SPDQG 237
            K G ++D  V NAL+++Y E G  +   +VF  +   D VSWN++     D E S  Q 
Sbjct: 515 LKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQA 574

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           ++ F QM+  G+  +  TFI IL A SSLS      Q+HA  +K+ L  +  +G +L+  
Sbjct: 575 VKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSC 634

Query: 298 YDKSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           Y K G + +    F  ++  +D  ++ ++I+ Y        A+     M  +G + + FT
Sbjct: 635 YGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFT 694

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
            A+ L+ C+ VATL  G  +H+  ++     D+ V +ALV MY+KCG ID A   F+   
Sbjct: 695 FATILSACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMP 754

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAF-RMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           LR+  SWN MI GY +HG GEKAL+ F RMMLD G  PD +TFV VLSACSH+G +EEG 
Sbjct: 755 LRNVYSWNSMISGYARHGHGEKALKLFTRMMLD-GQPPDHVTFVGVLSACSHVGFVEEGF 813

Query: 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
           +HF S+ ++Y ++P ++HF+CM+D+LGRAGK  E+ +FI    + PN L+W  +LGAC  
Sbjct: 814 EHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCR 873

Query: 536 HG--NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPS 593
               N EL  + AE LLELEP+   NYV  +++ A+  +W D +  R  +    +KKE  
Sbjct: 874 ANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAG 933

Query: 594 CSWI 597
           CSW+
Sbjct: 934 CSWV 937



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 148/568 (26%), Positives = 279/568 (49%), Gaps = 27/568 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFS----KFSLSTVLK 59
           A+ VF  +   N +SWN++++ Y+  GD      LF SM+     FS    +++  +++ 
Sbjct: 229 ARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFGSLIT 288

Query: 60  GFANSGYIKAGQ-VVHAMAIRL---GCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP 115
              +S  +  G  V+  M  R+   G   D ++S +LV  +++ GL D+A  +F ++   
Sbjct: 289 TACSS--VDFGLCVLEQMLARVEKSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVR 346

Query: 116 DVVAWGAIITCLDQQGCCQEAAKIFNLMRE-SSVKPNQFV--LTSLVRATTETGDQRCGE 172
           +VV+   ++  L +Q   + AAK+F+ M++   +  + +V  L++    +     +R G 
Sbjct: 347 NVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYVVLLSAFSEFSVLEEGRRKGR 406

Query: 173 SIHAVICKYGFESDTL-VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY 231
            +HA + + G   + + +GN LV+MY ++G ++    VFE +  +DSVSWN+L S     
Sbjct: 407 EVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQN 466

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
           E  +     F++M   G  P+  T I  L +C+SL  +  G+Q+H   +K  LD +  V 
Sbjct: 467 ECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVS 526

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQA-GEAEMALKCFRKMRLEGI 350
            +L+ +Y ++GC  +    F  +   D  ++ ++I + + +      A+K F +M   G 
Sbjct: 527 NALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGW 586

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
             +  T  + L+  S ++       +H++ +K     D  +  AL++ Y KCG +++ E 
Sbjct: 587 GLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEK 646

Query: 411 VF-KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
           +F + S  RD  SWN MI GY+ + L  KA++    M+ +G   D  TF  +LSAC+ + 
Sbjct: 647 IFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVA 706

Query: 470 LIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWEN 528
            +E G + H   I+    +   +   + ++D+  + G+      F     L  N   W +
Sbjct: 707 TLERGMEVHACGIRAC--LESDVVVGSALVDMYSKCGRIDYASRFFELMPLR-NVYSWNS 763

Query: 529 LLGACSWHGNIELDEKDAEKLLELEPKM 556
           ++   + HG+        EK L+L  +M
Sbjct: 764 MISGYARHGH-------GEKALKLFTRM 784



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 147/543 (27%), Positives = 257/543 (47%), Gaps = 19/543 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F  M   N+V+W  L++GY ++G   +    F  M       + ++  + L+    
Sbjct: 125 AQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQE 184

Query: 64  SGY--IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKC-GLADNALKVFYRIKDPDVVAW 120
           SG    K G  +H +  +     D  +   L+ MY  C   A++A  VF  I   + ++W
Sbjct: 185 SGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISW 244

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRES----SVKPNQFVLTSLVRATTETGD-QRCG-ESI 174
            +II+   ++G    A  +F+ M++     S KPN++   SL+     + D   C  E +
Sbjct: 245 NSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITTACSSVDFGLCVLEQM 304

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
            A + K GF  D  V +ALVS +   G       +FE +  ++ VS N L       +  
Sbjct: 305 LARVEKSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQG 364

Query: 235 DQGLRIFYQML-LKGFKPNMCTFIVILKACSSLSDV----GFGKQLHAHTIKHSLDGNHV 289
           +   ++F++M  L G   N  +++V+L A S  S +      G+++HAH I+  L+ N V
Sbjct: 365 EAAAKVFHEMKDLVGI--NSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKV 422

Query: 290 -VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
            +G  LV+MY KSG + DA   F+ +  KD  ++ ++I+   Q   +E A + F +MR  
Sbjct: 423 AIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRT 482

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
           G   + FTL S L+ C+ +  +  G  +H   +K G   D+ VS AL+A+YA+ G   + 
Sbjct: 483 GSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTEC 542

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLG-EKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
             VF      D  SWN +IG          +A++ F  M+  G+    +TF+ +LSA S 
Sbjct: 543 LKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSS 602

Query: 468 MGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWE 527
           + L E   +  + + K Y ++        ++   G+ G+  E E        T + + W 
Sbjct: 603 LSLHEVSHQIHALVLK-YCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWN 661

Query: 528 NLL 530
           +++
Sbjct: 662 SMI 664



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 143/504 (28%), Positives = 246/504 (48%), Gaps = 33/504 (6%)

Query: 53  SLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI 112
           +  +++  +  S   +  + +H  +I+ G   + FLS +L+++Y + G   +A K+F  +
Sbjct: 73  TFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEM 132

Query: 113 KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC-- 170
            + ++V W  +I+   Q G   EA   F  M  +   PN +   S +RA  E+G   C  
Sbjct: 133 SNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKL 192

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSR-VFEAIAHQDSVSWNALFSRFQ 229
           G  IH +I K  + SD +V N L+SMY      +  +R VF+ I  ++S+SWN++ S + 
Sbjct: 193 GVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYS 252

Query: 230 DYESPDQGLRIFYQMLLKG----FKPNMCTF-IVILKACSSLSDVGFG----KQLHAHTI 280
                     +F  M  +G    FKPN  TF  +I  ACSS   V FG    +Q+ A   
Sbjct: 253 RRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITTACSS---VDFGLCVLEQMLARVE 309

Query: 281 KHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALK 340
           K     +  V ++LV  + + G  +DA   F+ +  +++ +   ++    +  + E A K
Sbjct: 310 KSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAK 369

Query: 341 CFRKMR-LEGIKSNEFTLASCLNGCSPVATLANGRL----LHSIAVKTGHLLD--MFVST 393
            F +M+ L GI S+ + +   L+  S  + L  GR     +H+  ++TG L D  + +  
Sbjct: 370 VFHEMKDLVGINSDSYVV--LLSAFSEFSVLEEGRRKGREVHAHVIRTG-LNDNKVAIGN 426

Query: 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP 453
            LV MYAK G+I DA +VF+    +D+ SWN +I G  ++   E A E+F  M   G +P
Sbjct: 427 GLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMP 486

Query: 454 DEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIEN 512
              T +  LS+C+ +G I  G++ H   +K   G+   +     ++ +    G FTE   
Sbjct: 487 SNFTLISTLSSCASLGWIMLGEQIHCDGLK--LGLDTDVSVSNALLALYAETGCFTECLK 544

Query: 513 FITETKLTP--NALVWENLLGACS 534
             +   L P  + + W +++GA S
Sbjct: 545 VFS---LMPEYDQVSWNSVIGALS 565



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 59/118 (50%)

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
           S+  T  S +N           R LH  ++K G + ++F+S  L+ +Y + G +  A+ +
Sbjct: 69  SSSETFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKL 128

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
           F   + R+  +W  +I GY ++G  ++A   FR M+  G++P+   F   L AC   G
Sbjct: 129 FDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESG 186



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 11/151 (7%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A R F+ MP  NV SWN++++GYA  G G+K + LF  M    +     +   VL  
Sbjct: 743 IDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSA 802

Query: 61  FANSGYIKAG-QVVHAMA--IRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPD 116
            ++ G+++ G +   +M+   RL   ++ F SC +VD+  + G  D        +   P+
Sbjct: 803 CSHVGFVEEGFEHFKSMSEVYRLSPRVEHF-SC-MVDLLGRAGKLDEVGDFINSMPMKPN 860

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFNLMRESS 147
           V+ W  ++       CC+   +   L R ++
Sbjct: 861 VLIWRTVLG-----ACCRANGRNTELGRRAA 886


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/598 (34%), Positives = 336/598 (56%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           +LA+RVF  M   + V++N L++G+A+ G G+  + +F  M+    +    +++++L   
Sbjct: 196 KLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAAC 255

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           A+ G ++ G+ +H+  ++ G + D     SL+D+Y KCG  + A  +F      +VV W 
Sbjct: 256 ASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWN 315

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            ++    Q     ++ +IF  M+ + + PNQF    ++R  T TG    GE IH++  K 
Sbjct: 316 LMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKN 375

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           GFESD  V   L+ MY + G +    ++ E +  +D VSW ++ + +  ++  ++ L  F
Sbjct: 376 GFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATF 435

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M   G  P+         AC+ +  +  G Q+HA         +  +  +LV++Y + 
Sbjct: 436 KEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARC 495

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G  E+A   F  + +KD   +  +I+ + Q+   + AL  F KM   G K N FT  S +
Sbjct: 496 GRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAI 555

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           +  + +A +  G+ +H  AVKTGH  +  V+ AL+++Y KCGSI+DA+ +F   +LR+  
Sbjct: 556 SALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEV 615

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SWN +I    +HG G +AL+ F  M  EG  P+++TF+ VL+ACSH+GL+EEG  +F S+
Sbjct: 616 SWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSM 675

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
             +YG+ P   H+AC++DILGRAG+      F+ E  +T NA++W  LL AC  H NIE+
Sbjct: 676 SNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEI 735

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            E  A+ LLELEP   ++YV  S+  A  G+W +   VR ++  +GI+KEP  SWIEV
Sbjct: 736 GELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEV 793



 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 158/589 (26%), Positives = 292/589 (49%), Gaps = 19/589 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VFK +   + VSW A+L+GYA+SG G++   L+  M       + + LS+VL     
Sbjct: 97  ARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTK 156

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G+++HA   +     + F+  +L+ +Y   G    A +VF  +   D V +  +
Sbjct: 157 GKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTL 216

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   Q G  + A +IF+ M+ S ++P+   + SL+ A    GD + G+ +H+ + K G 
Sbjct: 217 ISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGM 276

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D +   +L+ +Y++ G +     +F      + V WN +   +       +   IF Q
Sbjct: 277 SFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQ 336

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G  PN  T+  IL+ C+    +  G+Q+H+ +IK+  + +  V   L+DMY K GC
Sbjct: 337 MQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGC 396

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L+ A    + L  +D+ ++T++I  Y Q    E AL  F++M+  G+  +   LAS  + 
Sbjct: 397 LDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASA 456

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +  +  G  +H+    +G+  D+ +   LV +YA+CG  ++A ++F+    +D  +W
Sbjct: 457 CAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITW 516

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK 482
           N +I G+ +  L ++AL  F  M   G   +  TF+  +SA +++  I++GK+ H  ++K
Sbjct: 517 NGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVK 576

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
              G T   +    +I + G+ G   + +   +E  L  N + W  ++ +CS HG     
Sbjct: 577 T--GHTSETEVANALISLYGKCGSIEDAKMIFSEMSLR-NEVSWNTIITSCSQHGR---- 629

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
                + L+L  +M+   + P+D++        F GV A  S  G+ +E
Sbjct: 630 ---GLEALDLFDQMKQEGLKPNDVT--------FIGVLAACSHVGLVEE 667



 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 139/458 (30%), Positives = 240/458 (52%), Gaps = 2/458 (0%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           +HA ++  G   D+ +   L+D+Y+K GL   A +VF  +   D V+W A+++   Q G 
Sbjct: 65  IHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGL 124

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
            +EA ++++ M  ++V P  +VL+S++ A T+      G  IHA + K  F S+T VGNA
Sbjct: 125 GKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNA 184

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           L+++Y+  G      RVF  +   D V++N L S        +  L+IF +M L G +P+
Sbjct: 185 LIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPD 244

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
             T   +L AC+S+ D+  GKQLH++ +K  +  +++   SL+D+Y K G +E A   F+
Sbjct: 245 CVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFN 304

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
                ++  +  ++ +Y Q  +   + + F +M+  GI  N+FT    L  C+    +  
Sbjct: 305 LGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIEL 364

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
           G  +HS+++K G   DM+VS  L+ MY+K G +D A  + +    RD  SW  MI GYV+
Sbjct: 365 GEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQ 424

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK 492
           H   E+AL  F+ M D G  PD I      SAC+ +  + +G +  + +  + G    I 
Sbjct: 425 HDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARV-YVSGYAADIS 483

Query: 493 HFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
            +  ++++  R G+  E  +   E +   + + W  L+
Sbjct: 484 IWNTLVNLYARCGRSEEAFSLFREIE-HKDEITWNGLI 520



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 119/373 (31%), Positives = 188/373 (50%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  +F      NVV WN +L  Y +  D  K   +F  M+      ++F+   +L+ 
Sbjct: 296 IETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRT 355

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              +G I+ G+ +H+++I+ G   D ++S  L+DMYSK G  D A K+   ++  DVV+W
Sbjct: 356 CTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSW 415

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I    Q   C+EA   F  M++  V P+   L S   A       R G  IHA +  
Sbjct: 416 TSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYV 475

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G+ +D  + N LV++Y   GR      +F  I H+D ++WN L S F       Q L +
Sbjct: 476 SGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMV 535

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M   G K N+ TFI  + A ++L+D+  GKQ+H   +K        V  +L+ +Y K
Sbjct: 536 FMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGK 595

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +EDA + F  ++ ++  ++  IITS +Q G    AL  F +M+ EG+K N+ T    
Sbjct: 596 CGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGV 655

Query: 361 LNGCSPVATLANG 373
           L  CS V  +  G
Sbjct: 656 LAACSHVGLVEEG 668



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 148/294 (50%), Gaps = 9/294 (3%)

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
           ++HA ++   L  + ++G  L+D+Y K+G +  A   F  L+++D  ++ A+++ YAQ+G
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSG 123

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST 393
             + A + + +M    +    + L+S L+ C+     A GR++H+   K     + FV  
Sbjct: 124 LGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGN 183

Query: 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP 453
           AL+A+Y   GS   AE VF      D  ++N +I G+ + G GE AL+ F  M   G  P
Sbjct: 184 ALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRP 243

Query: 454 DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENF 513
           D +T   +L+AC+ +G +++GK+  S + K  G++        ++D+  + G      + 
Sbjct: 244 DCVTVASLLAACASVGDLQKGKQLHSYLLKA-GMSFDYITEGSLLDLYVKCGDIETAHDI 302

Query: 514 ITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
                 T N ++W  +L A   +G I     D  K  E+  +M++  + P+  +
Sbjct: 303 FNLGDRT-NVVLWNLMLVA---YGQIS----DLAKSFEIFGQMQATGIHPNQFT 348


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/600 (33%), Positives = 334/600 (55%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+R+F  MP  + V WN +LNG+ + G+    + +F  M++ + K +  + ++VL  
Sbjct: 23  IEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMRNCQTKPNSITFASVLSI 82

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+    + G  +H + I  G   D  ++ +LV MYSK G   +ALK+F  + D +VV W
Sbjct: 83  CASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDALKLFNTMPDTNVVTW 142

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I    Q G   EA+ +F+ M  + V P+     S + + TE+   + G+ IH  I +
Sbjct: 143 NGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILR 202

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +G   D  + +AL+ +Y +   V    ++F+   + D V   A+ S +      +  L I
Sbjct: 203 HGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEI 262

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  +L +   PN  T   +L AC+ L+ +  GK+LHA+ +KH LD    VG++++DMY K
Sbjct: 263 FRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDERRHVGSAIMDMYAK 322

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L+ A   F  +  KD   + AIIT+ +Q G+ + A+  FR+M  EG+  +  ++++ 
Sbjct: 323 CGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAA 382

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L+ C+ +  L +G+ +HS  +K     ++F  +AL+ MY KCG++  A  VF     ++ 
Sbjct: 383 LSACANLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSVARCVFDMMREKNE 442

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SWN +I  Y  HG  E +L  F  ML++G  PD +TF+ +LSAC H G +++G ++F  
Sbjct: 443 VSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSACGHAGQVDKGIQYFRC 502

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + + YGI   ++H+AC++D+ GRAG+  E    I     +P+  VW  LLGAC  HGN+E
Sbjct: 503 MTEEYGIPARMEHYACIVDLFGRAGRLNEAFETIKNMPFSPDDGVWGTLLGACRVHGNVE 562

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           L E  +  LL+L+P+    YV  S++ A  G+W     +R+L+  +G++K P  SWIEV+
Sbjct: 563 LAEVASRCLLDLDPENSGCYVLLSNVHADAGQWGSVRKIRSLMKKRGVQKVPGYSWIEVN 622



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 135/476 (28%), Positives = 240/476 (50%), Gaps = 10/476 (2%)

Query: 80  LGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKI 139
           +G  +D+F+  SL+ +Y++ G  ++A ++F ++ + D V W  ++    + G    A K+
Sbjct: 1   MGFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKV 60

Query: 140 FNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYME 199
           F  MR    KPN     S++           G  +H ++   GF  D LV NALV+MY +
Sbjct: 61  FEDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSK 120

Query: 200 NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVI 259
            G++S   ++F  +   + V+WN + + F      D+   +F +M+  G  P+  TF   
Sbjct: 121 FGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASF 180

Query: 260 LKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVA---FDSLAN 316
           L + +  + +  GK++H + ++H +  +  + ++L+D+Y K     D G+A   F    N
Sbjct: 181 LPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKC---RDVGMACKIFKQSTN 237

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL 376
            D+   TAII+ Y   G    AL+ FR +  E +  N  TLAS L  C+ +ATL  G+ L
Sbjct: 238 VDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKEL 297

Query: 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
           H+  +K G      V +A++ MYAKCG +D A  +F+    +D   WN +I    ++G  
Sbjct: 298 HANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKP 357

Query: 437 EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFA 495
           ++A++ FR M  EG   D ++    LSAC+++  +  GK  H   IK  +     +   +
Sbjct: 358 QEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAF--DSEVFAES 415

Query: 496 CMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551
            +ID+ G+ G  + +   + +     N + W +++ A   HG++E+      K+LE
Sbjct: 416 ALIDMYGKCGNLS-VARCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFHKMLE 470


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/597 (33%), Positives = 332/597 (55%), Gaps = 1/597 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMK-DMEKKFSKFSLSTVLKGFA 62
           A+R+F  M + + +SW  L++GY  + D  + + LF +M+ +   +   F LS   K   
Sbjct: 68  ARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKACG 127

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
            +  +  G+++H  A++ G     F+  +L+DMY+K G      +VF+ +   +VV+W A
Sbjct: 128 LNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTA 187

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           IIT L + G  +EA   F+ M  S V+ + +     ++A  ++G    G  IHA   K G
Sbjct: 188 IITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKG 247

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F+  + V N L +MY + G++ YG  +FE ++ +D VSW  + +        +  ++ F 
Sbjct: 248 FDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFI 307

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M      PN  TF  ++  C++L+ + +G+QLHA  +   L  +  V  S++ MY K G
Sbjct: 308 RMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCG 367

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            L  + V F  +  +D+ +++ II  Y Q G    A +    MR+EG K  EF LAS L+
Sbjct: 368 QLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLS 427

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C  +A L +G+ LH+  +  G      V +AL+ MY KCGSI++A  +F  +   D  S
Sbjct: 428 ACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVS 487

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           W  MI GY +HG   + ++ F  +   G  PD +TF+ VLSACSH GL++ G  +F+++ 
Sbjct: 488 WTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFHYFNAMS 547

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           K Y I+P+ +H+ CMID+L RAG+ ++ E+ I       + +VW  LL AC  HG++E  
Sbjct: 548 KKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERG 607

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            + AE++L+LEP     ++  ++I A++G+W + + +R L+ S+G+ KEP  SWI+V
Sbjct: 608 RRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEPGWSWIKV 664



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 177/346 (51%), Gaps = 7/346 (2%)

Query: 164 ETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNA 223
           E  +    ++IH +      ++D    N  +   ++ G +    R+F+ ++ +D +SW  
Sbjct: 31  ERSNDNLSQNIHFI-----SQTDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTT 85

Query: 224 LFSRFQDYESPDQGLRIFYQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKH 282
           L S + +     + L +F  M ++ G + +     +  KAC   SDV +G+ LH + +K 
Sbjct: 86  LISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKT 145

Query: 283 SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCF 342
            L  +  VG++L+DMY K+G + +    F  +  +++ ++TAIIT   +AG  + AL  F
Sbjct: 146 GLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYF 205

Query: 343 RKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC 402
            +M    ++ + +T A  L  C+    L  GR +H+ A+K G  +  FV+  L  MY KC
Sbjct: 206 SEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKC 265

Query: 403 GSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVL 462
           G ++    +F+  ++RD  SW  +I   V+ G  E A++AF  M +    P+E TF  V+
Sbjct: 266 GKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVI 325

Query: 463 SACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFT 508
           S C+++  IE G++  + I  + G+  ++     ++ +  + G+ T
Sbjct: 326 SGCANLARIEWGEQLHALILHL-GLAASLSVENSIMTMYAKCGQLT 370



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 182/352 (51%), Gaps = 5/352 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E    +F+ M   +VVSW  ++    + G  +  +  F  M++ +   ++++ + V+ G
Sbjct: 268 LEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISG 327

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            AN   I+ G+ +HA+ + LG A    +  S++ MY+KCG   ++  +F+ +   D+V+W
Sbjct: 328 CANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSW 387

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             II    Q G   EA ++ + MR    KP +F L S++ A         G+ +HA +  
Sbjct: 388 STIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLS 447

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G E   +V +AL++MY + G +   SR+F+A  + D VSW A+ + + ++    + + +
Sbjct: 448 IGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDL 507

Query: 241 FYQMLLKGFKPNMCTFIVILKACS--SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           F ++   G +P+  TFI +L ACS   L D+GF    +A + K+ +  +      ++D+ 
Sbjct: 508 FEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGF-HYFNAMSKKYQISPSKEHYGCMIDLL 566

Query: 299 DKSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCF-RKMRLE 348
            ++G L DA    +++  ++D   ++ ++ +    G+ E   +   R ++LE
Sbjct: 567 CRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLE 618


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/601 (34%), Positives = 338/601 (56%), Gaps = 8/601 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F  MP+ N V+W  L++GY ++G  +    +   M       ++F+  + ++    
Sbjct: 54  ARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKEMIFEGFLPNRFAFGSAIRACQE 113

Query: 64  SG-YIKAGQVVHAMAIRLGCALDKF-LSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           S  + + G+ VH  AIR G    K  +   L++MY+KCG  D+A  VF  + D D V+W 
Sbjct: 114 SMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWN 173

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           ++IT LDQ  C ++A K +N MR++ + P+ F L S + +    G    G+  H    K 
Sbjct: 174 SMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGIKL 233

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY-ESPDQGLRI 240
           G + D  V N L+++Y E  R++   +VF  +  +D VSWN +     D   S  + + +
Sbjct: 234 GLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEV 293

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M+  G+ PN  TFI +L   SSLS      Q+HA  +K+++  ++ +  +L+  Y K
Sbjct: 294 FLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGK 353

Query: 301 SGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           SG +E+    F  ++  +D  ++ ++I+ Y        A+     M   G + + FT A+
Sbjct: 354 SGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFAT 413

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L+ C+ VATL  G  +H+ A++     D+ + +ALV MY+KCG ID A   F    +R+
Sbjct: 414 VLSACATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRN 473

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SWN MI GY +HG G+ AL  F  M   G +PD ITFV VLSACSH+GL++EG ++F 
Sbjct: 474 LYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFK 533

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN- 538
           S+ ++YG+ P ++H++CM+D+LGRAG+  +IENFI +  + PN L+W  +LGAC   GN 
Sbjct: 534 SMTEVYGLVPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTVLGACC-RGNG 592

Query: 539 --IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSW 596
              EL  + AE L  ++P+   NYV  S++ A+ G+W D +  R  +    +KKE  CSW
Sbjct: 593 RKTELGRRAAEMLFNMDPQNAVNYVLLSNMYASGGKWEDMARTRRAMREAAVKKEAGCSW 652

Query: 597 I 597
           +
Sbjct: 653 V 653



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 137/529 (25%), Positives = 244/529 (46%), Gaps = 27/529 (5%)

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
             + H   ++ G   D FL  +L+++Y + G   +A K+F  + D + V W  +I+   Q
Sbjct: 19  ANLFHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQ 78

Query: 130 QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD-QRCGESIHAVICKYGF-ESDT 187
            G  ++A  +   M      PN+F   S +RA  E+   +R G  +H    + G  ++  
Sbjct: 79  NGMPEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKV 138

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK 247
            VGN L++MY + G + +   VF  +  +DSVSWN++ +     +  +  ++ +  M   
Sbjct: 139 AVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKT 198

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           G  P+    I  L +C+SL  +  G+Q H   IK  LD +  V  +L+ +Y ++  L + 
Sbjct: 199 GLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAEC 258

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEA-EMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
              F  +  +D  ++  +I + A +G +   A++ F +M   G   N  T  + L   S 
Sbjct: 259 QKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSS 318

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF-KGSALRDTASWNM 425
           ++T      +H++ +K     D  +  AL+A Y K G +++ E +F + S  RD  SWN 
Sbjct: 319 LSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNS 378

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKI 484
           MI GY+ + L  KA++   +M+  G   D  TF  VLSAC+ +  +E G + H  +I+  
Sbjct: 379 MISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRAC 438

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTP--NALVWENLLGACSWHGNIELD 542
                 I   + ++D+  + G+      F     L P  N   W +++   + HG+    
Sbjct: 439 LESDVVIG--SALVDMYSKCGRIDYASRFFN---LMPVRNLYSWNSMISGYARHGH---- 489

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
               +  L L  +M+ +   P  I+        F GV +  S  G+  E
Sbjct: 490 ---GDNALRLFTRMKLSGQLPDHIT--------FVGVLSACSHIGLVDE 527



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 49/107 (45%)

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           +C      +    +  L H   +K G   D+F+   L+ +Y + G    A  +F     R
Sbjct: 5   TCFQLYLTLQLQLDANLFHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDR 64

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC 465
           +  +W  +I GY ++G+ E A    + M+ EG++P+   F   + AC
Sbjct: 65  NGVTWACLISGYTQNGMPEDACGVLKEMIFEGFLPNRFAFGSAIRAC 111



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 19/155 (12%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A R F  MP  N+ SWN++++GYA  G G   + LF  MK   +     +   VL  
Sbjct: 459 IDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSA 518

Query: 61  FANSG-------YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
            ++ G       Y K+   V+ +  R+     +  SC +VD+  + G  D       ++ 
Sbjct: 519 CSHIGLVDEGFEYFKSMTEVYGLVPRV-----EHYSC-MVDLLGRAGELDKIENFINKMP 572

Query: 114 -DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESS 147
             P+++ W  ++       CC+   +   L R ++
Sbjct: 573 IKPNILIWRTVLG-----ACCRGNGRKTELGRRAA 602


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/599 (33%), Positives = 338/599 (56%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + LA+RVF  MP  + V++N L++ +A+ G+G+  + +F  M+         +++++L  
Sbjct: 194 LSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAA 253

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+ G +  G+ +H+  ++ G + D  +  SL+D+Y KCG+   AL++F      +VV W
Sbjct: 254 CASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLW 313

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             ++    Q     ++  +F  M  + V+PN+F    L+R  T  G+   GE IH +  K
Sbjct: 314 NLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIK 373

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GFESD  V   L+ MY + G +    R+ E +  +D VSW ++ + +  +E   + L  
Sbjct: 374 TGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALET 433

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  M L G  P+       + AC+ +  +  G+Q+H+         +  +  +LV++Y +
Sbjct: 434 FKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYAR 493

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G  ++A   F+++ +KD   +  +++ +AQ+G  E AL+ F KM   G+K N FT  S 
Sbjct: 494 CGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSS 553

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           ++  + +A +  G+ +H+  +KTG   +  V+ AL+++Y KCGSI+DA+  F   + R+ 
Sbjct: 554 ISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNH 613

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SWN +I    +HG G +AL+ F  M  EG  P+++TF+ VL+ACSH+GL+EEG  +F S
Sbjct: 614 VSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKS 673

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +   +GI P   H+AC++DILGRAG+      F+ E  ++ NA+VW  LL AC  H NIE
Sbjct: 674 MSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKNIE 733

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           + E  A+ LLELEP   ++YV  S+  A  G+W     VR ++  +G++KEP  SWIEV
Sbjct: 734 IGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEV 792



 Score =  258 bits (658), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 154/520 (29%), Positives = 268/520 (51%), Gaps = 6/520 (1%)

Query: 11  MPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANS-GYIKA 69
           M      S N  L G+    D +K++ LF +     +       +  L+    S  +   
Sbjct: 1   MTRRAAASLNKSLTGFLAHEDPEKLLSLFAAKVRQCRGLGSVDFACALRECRGSVKHWPL 60

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
             V+HA AI  G   D+     L+D+Y+K GL   A +VF ++   D V+W A+++   +
Sbjct: 61  VPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYAR 120

Query: 130 QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
            G  +EA  +++ M  S V P  +VL+S++ A T+      G  +HA + K G  S+T+V
Sbjct: 121 NGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVV 180

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
           GNAL+++Y+  G +S   RVF  + + D V++N L SR     + +  L IF +M L G+
Sbjct: 181 GNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGW 240

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
            P+  T   +L AC+S+ D+  GKQLH++ +K  +  ++++  SL+D+Y K G + +A  
Sbjct: 241 TPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALE 300

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369
            F S    ++  +  ++ +Y Q  +   +   F +M   G++ NEFT    L  C+    
Sbjct: 301 IFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGE 360

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           +  G  +H +++KTG   DM+VS  L+ MY+K G +D A  + +    +D  SW  MI G
Sbjct: 361 INLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAG 420

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITP 489
           YV+H   ++ALE F+ M   G  PD I     +SAC+ +  + +G++  S +  + G + 
Sbjct: 421 YVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRV-YVSGYSA 479

Query: 490 TIKHFACMIDILGRAGK----FTEIENFITETKLTPNALV 525
            +  +  ++++  R G+    F+  E    + K+T N +V
Sbjct: 480 DVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMV 519



 Score =  254 bits (649), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 162/591 (27%), Positives = 299/591 (50%), Gaps = 17/591 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+RVF+ +   + VSW A+L+GYA +G G++ + L+  M       + + LS+VL  
Sbjct: 93  VQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSA 152

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              +   + G++VHA   + G   +  +  +L+ +Y + G    A +VF  +   D V +
Sbjct: 153 CTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTF 212

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+   Q G  + A +IF  MR S   P+   + SL+ A    GD   G+ +H+ + K
Sbjct: 213 NTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLK 272

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G   D ++  +L+ +Y++ G +     +F++    + V WN +   +       +   +
Sbjct: 273 AGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDL 332

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QM+  G +PN  T+  +L+ C+   ++  G+Q+H  +IK   + +  V   L+DMY K
Sbjct: 333 FCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSK 392

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L+ A    + L  KD+ ++T++I  Y Q    + AL+ F+ M+L GI  +   LAS 
Sbjct: 393 YGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASA 452

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           ++ C+ +  +  G+ +HS    +G+  D+ +  ALV +YA+CG   +A ++F+    +D 
Sbjct: 453 ISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDK 512

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            +WN M+ G+ + GL E+ALE F  M   G   +  TFV  +SA +++  I++GK+  ++
Sbjct: 513 ITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHAT 572

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + K  G T   +    +I + G+ G   + +    E     N + W  ++ +CS HG   
Sbjct: 573 VIKT-GCTSETEVANALISLYGKCGSIEDAKMQFFEMS-ERNHVSWNTIITSCSQHGW-- 628

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
                  + L+L  +M+   + P+D++        F GV A  S  G+ +E
Sbjct: 629 -----GLEALDLFDQMKQEGLKPNDVT--------FIGVLAACSHVGLVEE 666


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 223/602 (37%), Positives = 329/602 (54%), Gaps = 9/602 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK---- 59
           A+ VF  M E ++ SW  ++ G A+ G GQ+   LF  M   E+     +L+T L     
Sbjct: 185 ARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQM---ERGGCLPNLTTYLSILNA 241

Query: 60  -GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
               ++G ++  + VH  A + G   D  +  +L+ MY+KCG  D+A  VF  + D DV+
Sbjct: 242 SAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVI 301

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +W A+I  L Q GC  EA  IF  M++    P+     SL+     TG     + +H   
Sbjct: 302 SWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHA 361

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            + G  SD  VG+A V MY+  G +     +F+ +A ++  +WNA+       +   + L
Sbjct: 362 VEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREAL 421

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            +F QM  +GF P+  TF+ IL A      + + K++H++ I   L  +  VG +LV MY
Sbjct: 422 SLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLV-DLRVGNALVHMY 480

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G    A   FD +  +++  +T +I+  AQ G    A   F +M  EGI  +  T  
Sbjct: 481 AKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYV 540

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L+ C+    L   + +HS AV  G + D+ V  ALV MYAKCGS+DDA  VF     R
Sbjct: 541 SILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLER 600

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D  SW +MIGG  +HG G  AL+ F  M  EG+ P+  +FV VLSACSH GL++EG++ F
Sbjct: 601 DVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQF 660

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            S+ + YGI PT++H+ CM+D+LGRAG+  E ++FI    + P    W  LLGAC  +GN
Sbjct: 661 LSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGN 720

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           +E+ E  A++ L+L+PK  S YV  S+I A  G W     VR+++  +GI+KEP  SWIE
Sbjct: 721 LEMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIE 780

Query: 599 VD 600
           VD
Sbjct: 781 VD 782



 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 183/594 (30%), Positives = 293/594 (49%), Gaps = 9/594 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F  M E NV+SW  ++ G A  G GQ+  H F  M+      + ++  ++L   A+
Sbjct: 84  AQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANAS 143

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +G ++  + VH+ A+  G ALD  +  +LV MY+K G  D+A  VF  + + D+ +W  +
Sbjct: 144 AGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVM 203

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRAT--TETGDQRCGESIHAVICKY 181
           I  L Q G  QEA  +F  M      PN     S++ A+  T TG     + +H    K 
Sbjct: 204 IGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKA 263

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           GF SD  VGNAL+ MY + G +     VF+ +  +D +SWNA+           +   IF
Sbjct: 264 GFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIF 323

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M  +GF P+  T++ +L    S     + K++H H ++  L  +  VG++ V MY + 
Sbjct: 324 LKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRC 383

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G ++DA + FD LA +++  + A+I   AQ      AL  F +MR EG   +  T  + L
Sbjct: 384 GSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNIL 443

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           +       L   + +HS A+  G L+D+ V  ALV MYAKCG+   A+ VF     R+  
Sbjct: 444 SANVGEEALEWVKEVHSYAIDAG-LVDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVT 502

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSS 480
           +W +MI G  +HG G +A   F  ML EG VPD  T+V +LSAC+  G +E  K+ H  +
Sbjct: 503 TWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHA 562

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +    G+   ++    ++ +  + G   +    + +  L  +   W  ++G  + HG   
Sbjct: 563 VNA--GLVSDLRVGNALVHMYAKCGSVDDARR-VFDDMLERDVYSWTVMIGGLAQHGR-G 618

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLS-SQGIKKEPS 593
           LD  D    ++LE    + Y F + +SA         G R  LS +Q    EP+
Sbjct: 619 LDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPT 672



 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 142/446 (31%), Positives = 228/446 (51%), Gaps = 4/446 (0%)

Query: 22  LLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLG 81
           ++ GYAE G  +  M ++  M+    + ++ +  ++LK   +   +K G+ +HA  I+ G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 82  CALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFN 141
              D  +  +LV+MY KCG  D+A  +F ++ + +V++W  +I  L   G  QEA   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 142 LMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENG 201
            M+     PN +   S++ A    G     + +H+     G   D  VGNALV MY ++G
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 180

Query: 202 RVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILK 261
            +     VF+ +  +D  SW  +      +    +   +F QM   G  PN+ T++ IL 
Sbjct: 181 SIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILN 240

Query: 262 ACSSLSDVG---FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKD 318
           A S+++  G   + K++H H  K     +  VG +L+ MY K G ++DA + FD + ++D
Sbjct: 241 A-SAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRD 299

Query: 319 LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHS 378
           + ++ A+I   AQ G    A   F KM+ EG   +  T  S LN           + +H 
Sbjct: 300 VISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHK 359

Query: 379 IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEK 438
            AV+ G + D+ V +A V MY +CGSIDDA+ +F   A+R+  +WN MIGG  +   G +
Sbjct: 360 HAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGRE 419

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSA 464
           AL  F  M  EG+ PD  TFV +LSA
Sbjct: 420 ALSLFLQMRREGFFPDATTFVNILSA 445



 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 137/440 (31%), Positives = 219/440 (49%), Gaps = 17/440 (3%)

Query: 129 QQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTL 188
           + G  ++A K+++ MR    +PN+    S+++A       + G+ IHA I + GF+SD  
Sbjct: 7   EYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVR 66

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG 248
           V  ALV+MY++ G +     +F+ +  ++ +SW  +      Y    +    F QM  +G
Sbjct: 67  VETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREG 126

Query: 249 FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
           F PN  T++ IL A +S   + + K++H+H +   L  +  VG +LV MY KSG ++DA 
Sbjct: 127 FIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDAR 186

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
           V FD +  +D+F++T +I   AQ G  + A   F +M   G   N  T  S LN  +  +
Sbjct: 187 VVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITS 246

Query: 369 T--LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           T  L   + +H  A K G + D+ V  AL+ MYAKCGSIDDA  VF G   RD  SWN M
Sbjct: 247 TGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAM 306

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG---LIEEGKKHFSSIKK 483
           IGG  ++G G +A   F  M  EG+VPD  T++ +L+     G    ++E  KH   +  
Sbjct: 307 IGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEV-- 364

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
             G+   ++  +  + +  R G   + +  I +     N   W  ++G  +        +
Sbjct: 365 --GLVSDLRVGSAFVHMYIRCGSIDDAQ-LIFDKLAVRNVTTWNAMIGGVA-------QQ 414

Query: 544 KDAEKLLELEPKMESNYVFP 563
           K   + L L  +M     FP
Sbjct: 415 KCGREALSLFLQMRREGFFP 434



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 89/239 (37%), Positives = 137/239 (57%)

Query: 228 FQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGN 287
           + +Y   +  ++++ QM  +G +PN  T++ ILKAC S   + +GK++HAH I+     +
Sbjct: 5   YAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSD 64

Query: 288 HVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL 347
             V T+LV+MY K G ++DA + FD +  +++ ++T +I   A  G  + A   F +M+ 
Sbjct: 65  VRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQR 124

Query: 348 EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
           EG   N +T  S LN  +    L   + +HS AV  G  LD+ V  ALV MYAK GSIDD
Sbjct: 125 EGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDD 184

Query: 408 AEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
           A  VF G   RD  SW +MIGG  +HG G++A   F  M   G +P+  T++ +L+A +
Sbjct: 185 ARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASA 243



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 116/215 (53%), Gaps = 4/215 (1%)

Query: 325 IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           +I  YA+ G AE A+K + +MR EG + NE T  S L  C    +L  G+ +H+  +++G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
              D+ V TALV MY KCGSIDDA+ +F     R+  SW +MIGG   +G G++A   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGR 503
            M  EG++P+  T+V +L+A +  G +E  K+ H  ++    G+   ++    ++ +  +
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNA--GLALDLRVGNALVHMYAK 178

Query: 504 AGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           +G   +    + +  +  +   W  ++G  + HG 
Sbjct: 179 SGSIDD-ARVVFDGMVERDIFSWTVMIGGLAQHGR 212


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/596 (32%), Positives = 338/596 (56%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F  M   + +S+N+L++G A+ G   + + LF  M+    K    +++++L   A+
Sbjct: 267 AEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACAS 326

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G    G+ +H+  I++G + D  +  SL+D+Y KC   + A + F   +  +VV W  +
Sbjct: 327 VGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVM 386

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    Q G   E+  IF  M+   + PNQ+   S++R  T  G    GE IH  + K GF
Sbjct: 387 LVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGF 446

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           + +  V + L+ MY ++G +     + + +  +D VSW A+ + +  ++   + L++F +
Sbjct: 447 QFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQE 506

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +G + +   F   + AC+ +  +  G+Q+HA +       +  +G +LV +Y + G 
Sbjct: 507 MENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGR 566

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
            +DA +AF+ +  KD  ++ A+I+ +AQ+G  E AL+ F +M   G+++N FT  S ++ 
Sbjct: 567 AQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSA 626

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
            +  A +  G+ +H++ +KTG+  +   S  L+ +Y+KCGSI+DA+  F     ++  SW
Sbjct: 627 TANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSW 686

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N MI GY +HG G +A+  F  M   G +P+ +TFV VLSACSH+GL+ EG  +F S+ K
Sbjct: 687 NAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSK 746

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            +G+ P  +H+ C++D+LGRA        FI E  + P+A++W  LL AC+ H NIE+ E
Sbjct: 747 EHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGE 806

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
             A  LLELEP+  + YV  S++ A  G+W+     R ++  +G+KKEP  SWIEV
Sbjct: 807 FAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEV 862



 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 156/529 (29%), Positives = 270/529 (51%), Gaps = 10/529 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A ++F  +P  NV  WN +++G        +V+ LF  M        + + ++VL+  A 
Sbjct: 64  AIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLR--AC 121

Query: 64  SGYIKAGQV---VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           SG     QV   +HA  I  G      +   L+D+YSK G  D A  VF R+   D V+W
Sbjct: 122 SGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSW 181

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I+ L Q G   EA  +F  M +S+V P  +V +S++ A T+    + GE +H  I K
Sbjct: 182 VAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVK 241

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +G  S+T V NALV++Y   G +    ++F  +  +D +S+N+L S        D+ L++
Sbjct: 242 WGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQL 301

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M L   KP+  T   +L AC+S+     GKQLH++ IK  +  + ++  SL+D+Y K
Sbjct: 302 FEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVK 361

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
              +E A   F +   +++  +  ++ +Y Q G    +   F +M++EG+  N++T  S 
Sbjct: 362 CFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSI 421

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L  C+ +  L  G  +H+  +K+G   +++V + L+ MYAK G +D A  + +     D 
Sbjct: 422 LRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDV 481

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SW  MI GY +H L  +AL+ F+ M ++G   D I F   +SAC+ +  + +G++   +
Sbjct: 482 VSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQ-IHA 540

Query: 481 IKKIYGITPTIKHFACMIDILGRAGK----FTEIENFITETKLTPNALV 525
              I G +  +     ++ +  R G+    +   E    +  ++ NAL+
Sbjct: 541 QSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALI 589



 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 148/538 (27%), Positives = 270/538 (50%), Gaps = 4/538 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++LAK VF+ +   + VSW A+++G +++G   + + LFC M       + +  S+VL  
Sbjct: 163 VDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSA 222

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                  K G+ +H   ++ G + + F+  +LV +YS+ G    A ++F ++   D +++
Sbjct: 223 CTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISY 282

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I+ L Q+G    A ++F  M+   +KP+   + SL+ A    G    G+ +H+ + K
Sbjct: 283 NSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIK 342

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G  SD ++  +L+ +Y++   +      F     ++ V WN +   +    +  +   I
Sbjct: 343 MGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWI 402

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QM ++G  PN  T+  IL+ C+SL  +  G+Q+H   IK     N  V + L+DMY K
Sbjct: 403 FLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAK 462

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L+ A      L  +D+ ++TA+I  Y Q      ALK F++M  +GI+S+    +S 
Sbjct: 463 HGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSA 522

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           ++ C+ +  L  G+ +H+ +  +G+  D+ +  ALV++YA+CG   DA   F+    +D 
Sbjct: 523 ISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDN 582

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFS 479
            SWN +I G+ + G  E+AL+ F  M   G   +  TF   +SA ++   I++GK+ H  
Sbjct: 583 ISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAM 642

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
            IK   G     +    +I +  + G   + +    E     N + W  ++   S HG
Sbjct: 643 MIKT--GYDSETEASNVLITLYSKCGSIEDAKREFFEMP-EKNVVSWNAMITGYSQHG 697



 Score =  218 bits (556), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 155/558 (27%), Positives = 266/558 (47%), Gaps = 20/558 (3%)

Query: 45  MEKKFSKFSLSTVL---KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGL 101
           ME++  + ++ T L   +G  NSG +   + +HA   + G   +  L   L+D+Y   G 
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 102 ADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRA 161
            DNA+K+F  I   +V  W  +I+ L  +    +   +F+LM   +V P++    S++RA
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 162 TT-ETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS 220
            +      +  E IHA I  +GF S  LV N L+ +Y +NG V     VFE +  +DSVS
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVS 180

Query: 221 WNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTI 280
           W A+ S        D+ + +F QM      P    F  +L AC+ +     G+QLH   +
Sbjct: 181 WVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIV 240

Query: 281 KHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALK 340
           K  L     V  +LV +Y + G L  A   F  +  +D  +Y ++I+  AQ G ++ AL+
Sbjct: 241 KWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQ 300

Query: 341 CFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYA 400
            F KM+L+ +K +  T+AS L+ C+ V     G+ LHS  +K G   D+ +  +L+ +Y 
Sbjct: 301 LFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYV 360

Query: 401 KCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVV 460
           KC  I+ A   F  +   +   WN+M+  Y + G   ++   F  M  EG +P++ T+  
Sbjct: 361 KCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPS 420

Query: 461 VLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKL 519
           +L  C+ +G ++ G++ H   IK   G    +   + +ID+  + G+       +   + 
Sbjct: 421 ILRTCTSLGALDLGEQIHTQVIKS--GFQFNVYVCSVLIDMYAKHGELDTARGILQRLR- 477

Query: 520 TPNALVWENLLGACSWHGNIELDEKDAEKLLELEPK--MESNYVFPSDISATQGRWNDFS 577
             + + W  ++   + H   +L  +  +   E+E +     N  F S ISA        +
Sbjct: 478 EEDVVSWTAMIAGYTQH---DLFAEALKLFQEMENQGIRSDNIGFSSAISAC-------A 527

Query: 578 GVRALLSSQGIKKEPSCS 595
           G++AL   Q I  +   S
Sbjct: 528 GIQALNQGQQIHAQSYIS 545



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 111/373 (29%), Positives = 184/373 (49%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A   F +    NVV WN +L  Y + G+  +   +F  M+      ++++  ++L+ 
Sbjct: 365 IETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRT 424

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             + G +  G+ +H   I+ G   + ++   L+DMY+K G  D A  +  R+++ DVV+W
Sbjct: 425 CTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSW 484

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    Q     EA K+F  M    ++ +    +S + A         G+ IHA    
Sbjct: 485 TAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYI 544

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G+  D  +GNALVS+Y   GR       FE I  +D++SWNAL S F      ++ L++
Sbjct: 545 SGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQV 604

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QM   G + N+ TF   + A ++ +++  GKQ+HA  IK   D        L+ +Y K
Sbjct: 605 FSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSK 664

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +EDA   F  +  K++ ++ A+IT Y+Q G    A+  F +M+  G+  N  T    
Sbjct: 665 CGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGV 724

Query: 361 LNGCSPVATLANG 373
           L+ CS V  +  G
Sbjct: 725 LSACSHVGLVNEG 737


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/632 (33%), Positives = 343/632 (54%), Gaps = 39/632 (6%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESG---------DG---------------------- 32
           A+++F  MP+ +  SWN +++ Y   G         DG                      
Sbjct: 84  ARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCK 143

Query: 33  QKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSL 92
            +   LF SM+    K S+F+L +VL+  ++ G I+ G+++H   ++ G   + F+   L
Sbjct: 144 VEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGL 203

Query: 93  VDMYSKCGLADNALKVF--YRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKP 150
           VDMY+KC     A  +F        + V W A++T   Q G   +A + F  M    V+ 
Sbjct: 204 VDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVEC 263

Query: 151 NQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF 210
           NQ+   +++ A +    +  GE +H  I K GF S+  V +ALV MY + G +     + 
Sbjct: 264 NQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNML 323

Query: 211 EAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKAC--SSLSD 268
           E +   D VSWN+L   F  +   ++ LR+F  M  +  K +  TF  +L  C   S++ 
Sbjct: 324 ETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINP 383

Query: 269 VGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITS 328
               K +H   IK   +   +V  +LVDMY K+G ++ A   F+ +  KD+ ++T+++T 
Sbjct: 384 ----KSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTG 439

Query: 329 YAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLD 388
           YAQ    E +LK F  MR+ G+  ++F +AS L+ C+ +  L  G+ +H   +K+G    
Sbjct: 440 YAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWS 499

Query: 389 MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
             V  +LVAMYAKCG +DDA+A+F    ++D  +W  +I GY ++G G  +L+ +  M+ 
Sbjct: 500 QSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVS 559

Query: 449 EGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFT 508
            G  PD ITF+ +L ACSH GL++EG+K+F  + K+YGI P  +H+ACMID+ GR+GK  
Sbjct: 560 SGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLD 619

Query: 509 EIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISA 568
           E +  + +  + P+A VW++LL AC  H N+EL E+ A  L ELEP     YV  S++ +
Sbjct: 620 EAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELEPMNAMPYVMLSNMYS 679

Query: 569 TQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
              +WND + +R L+ S+GI KEP CSW+E++
Sbjct: 680 ASRKWNDVAKIRKLMKSKGIVKEPGCSWLEIN 711



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 173/391 (44%), Gaps = 55/391 (14%)

Query: 208 RVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLS 267
           + F A  + + + W    ++  D  +  Q +   +   +  F  N C F+  L++  + +
Sbjct: 2   KPFHAFYYCNLLPW---LNKITDERTVQQVIMHKFSSKVLSFPHNPCKFMAFLRSIHTTT 58

Query: 268 DVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIIT 327
              +      +               L++   KSG + DA   FD +  KD +++  +I+
Sbjct: 59  AASYESIYQTN--------------QLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMIS 104

Query: 328 SYAQAG---EAEM----------------------------ALKCFRKMRLEGIKSNEFT 356
           SY   G   EA                              A   FR MRLEG K+++FT
Sbjct: 105 SYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFT 164

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
           L S L  CS +  +  G ++H   VK G   ++FV T LV MYAKC  + +AE +FKG  
Sbjct: 165 LGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLE 224

Query: 417 L--RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
              ++   W  M+ GY ++G G KA+E FR M  +G   ++ TF  +L+ACS +     G
Sbjct: 225 FDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFG 284

Query: 475 KK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           ++ H   +K  +G    ++  + ++D+  + G     +N + ET    + + W +L+   
Sbjct: 285 EQVHGFIVKSGFGSNVYVQ--SALVDMYAKCGDLKNAKNML-ETMEDDDVVSWNSLMVGF 341

Query: 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPS 564
             HG  E   +  + +     K++ +Y FPS
Sbjct: 342 VRHGLEEEALRLFKNMHGRNMKID-DYTFPS 371



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 118/241 (48%), Gaps = 2/241 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A  VF+ M E +V+SW +L+ GYA++   ++ + +FC M+       +F ++++L  
Sbjct: 415 MDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSA 474

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    ++ G+ VH   I+ G    + +  SLV MY+KCG  D+A  +F  ++  DV+ W
Sbjct: 475 CAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITW 534

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            AII    Q G  + + K ++ M  S  +P+      L+ A +  G    G      + K
Sbjct: 535 TAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNK 594

Query: 181 -YGFESDTLVGNALVSMYMENGRVSYGSRVFEAI-AHQDSVSWNALFSRFQDYESPDQGL 238
            YG +        ++ ++  +G++    ++ + +    D+  W +L S  + +E+ +   
Sbjct: 595 VYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAE 654

Query: 239 R 239
           R
Sbjct: 655 R 655


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/596 (33%), Positives = 328/596 (55%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F +M + + V++N L+NG ++ G G+K M LF  M     +    +L++++   + 
Sbjct: 302 AEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSA 361

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G +  GQ +HA   +LG A +  +  +L+++Y+KC   + AL  F   +  +VV W  +
Sbjct: 362 DGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVM 421

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +         + + +IF  M+   + PNQ+   S+++     GD   GE IH+ I K  F
Sbjct: 422 LVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNF 481

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           + +  V + L+ MY + G++     +    A +D VSW  + + +  Y   D+ L  F Q
Sbjct: 482 QLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQ 541

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           ML +G + +       + AC+ L  +  G+Q+HA         +     +LV +Y + G 
Sbjct: 542 MLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGK 601

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +E++ +AF+     D  A+ A+++ + Q+G  E AL+ F +M  EGI +N FT  S +  
Sbjct: 602 IEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKA 661

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
            S  A +  G+ +H++  KTG+  +  V  AL++MYAKCGSI DAE  F   + ++  SW
Sbjct: 662 ASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSW 721

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I  Y KHG G +AL++F  M+     P+ +T V VLSACSH+GL+++G  +F S+  
Sbjct: 722 NAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNS 781

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            YG++P  +H+ C++D+L RAG  +  + FI E  + P+ALVW  LL AC  H N+E+ E
Sbjct: 782 EYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGE 841

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
             A  LLELEP+  + YV  S++ A   +W+     R  +  +G+KKEP  SWIEV
Sbjct: 842 FAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEV 897



 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 150/537 (27%), Positives = 266/537 (49%), Gaps = 2/537 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++LA+RVF  +   +  SW A+++G +++    + + LFC M  +    + ++ S+VL  
Sbjct: 198 VDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSA 257

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 ++ G+ +H + ++LG + D ++  +LV +Y   G   +A  +F  +   D V +
Sbjct: 258 CKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTY 317

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I  L Q G  ++A ++F  M    ++P+   L SLV A +  G    G+ +HA   K
Sbjct: 318 NTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTK 377

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GF S+  +  AL+++Y +   +      F     ++ V WN +   +   +      RI
Sbjct: 378 LGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRI 437

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QM ++   PN  T+  ILK C  L D+  G+Q+H+  IK +   N  V + L+DMY K
Sbjct: 438 FRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAK 497

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L+ A       A KD+ ++T +I  Y Q    + AL  FR+M   GI+S+E  L + 
Sbjct: 498 LGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNA 557

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           ++ C+ +  L  G+ +H+ A  +G   D+    ALV +Y++CG I+++   F+ +   D 
Sbjct: 558 VSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDN 617

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            +WN ++ G+ + G  E+AL  F  M  EG   +  TF   + A S    +++GK+  + 
Sbjct: 618 IAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAV 677

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           I K  G     +    +I +  + G  ++ E    E   T N + W  ++ A S HG
Sbjct: 678 ITKT-GYDSETEVCNALISMYAKCGSISDAEKQFLEVS-TKNEVSWNAIINAYSKHG 732



 Score =  241 bits (616), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 162/594 (27%), Positives = 284/594 (47%), Gaps = 12/594 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG-FA 62
           A +VF  MPE  + +WN ++   A      +V  LF  M       ++ + S VL+    
Sbjct: 99  AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG 158

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
            S      + +HA  +  G      +   L+D+YS+ G  D A +VF  ++  D  +W A
Sbjct: 159 GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVA 218

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I+ L +  C  EA ++F  M    + P  +  +S++ A  +      GE +H ++ K G
Sbjct: 219 MISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 278

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F SDT V NALVS+Y   G +     +F  ++ +D+V++N L +        ++ + +F 
Sbjct: 279 FSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFK 338

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M L G +P+  T   ++ ACS+   +  G+QLHA+T K     N+ +  +L+++Y K  
Sbjct: 339 RMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCA 398

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            +E A   F     +++  +  ++ +Y    +   + + FR+M++E I  N++T  S L 
Sbjct: 399 DIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILK 458

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C  +  L  G  +HS  +KT   L+ +V + L+ MYAK G +D A  +    A +D  S
Sbjct: 459 TCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVS 518

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           W  MI GY ++   +KAL  FR MLD G   DE+     +SAC+ +  ++EG++   +  
Sbjct: 519 WTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQ-IHAQA 577

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
            + G +  +     ++ +  R GK  E      +T+   N + W  L+      GN E  
Sbjct: 578 CVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDN-IAWNALVSGFQQSGNNE-- 634

Query: 543 EKDAEKL---LELEPKMESNYVFPSDISATQGRWNDFSG--VRALLSSQGIKKE 591
             +A ++   +  E    +N+ F S + A     N   G  V A+++  G   E
Sbjct: 635 --EALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSE 686



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 132/465 (28%), Positives = 214/465 (46%), Gaps = 19/465 (4%)

Query: 53  SLSTVLKG-FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYR 111
           +L  +L+G    +G +  G+ +H+  ++LG   +  LS  L D Y   G    A KVF  
Sbjct: 46  TLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDE 105

Query: 112 IKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG 171
           + +  +  W  +I  L  +    E   +F  M   +V PN+   + ++ A       R G
Sbjct: 106 MPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC------RGG 159

Query: 172 -------ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNAL 224
                  E IHA I   G    T+V N L+ +Y  NG V    RVF+ +  +D  SW A+
Sbjct: 160 SVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAM 219

Query: 225 FSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL 284
            S     E   + +R+F  M + G  P    F  +L AC  +  +  G+QLH   +K   
Sbjct: 220 ISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGF 279

Query: 285 DGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRK 344
             +  V  +LV +Y   G L  A   F +++ +D   Y  +I   +Q G  E A++ F++
Sbjct: 280 SSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKR 339

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404
           M L+G++ +  TLAS +  CS   TL  G+ LH+   K G   +  +  AL+ +YAKC  
Sbjct: 340 MHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCAD 399

Query: 405 IDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
           I+ A   F  + + +   WN+M+  Y        +   FR M  E  VP++ T+  +L  
Sbjct: 400 IETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKT 459

Query: 465 CSHMGLIEEGKKHFSSIKKIYGITPTIKHFAC--MIDILGRAGKF 507
           C  +G +E G++  S I K       +  + C  +ID+  + GK 
Sbjct: 460 CIRLGDLELGEQIHSQIIK---TNFQLNAYVCSVLIDMYAKLGKL 501



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 127/450 (28%), Positives = 206/450 (45%), Gaps = 13/450 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A   F      NVV WN +L  Y    D +    +F  M+  E   ++++  ++LK 
Sbjct: 400 IETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKT 459

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
               G ++ G+ +H+  I+    L+ ++   L+DMY+K G  D A  +  R    DVV+W
Sbjct: 460 CIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSW 519

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I    Q     +A   F  M +  ++ ++  LT+ V A       + G+ IHA  C 
Sbjct: 520 TTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACV 579

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GF SD    NALV++Y   G++      FE     D+++WNAL S FQ   + ++ LR+
Sbjct: 580 SGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRV 639

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M  +G   N  TF   +KA S  +++  GKQ+HA   K   D    V  +L+ MY K
Sbjct: 640 FVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAK 699

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G + DA   F  ++ K+  ++ AII +Y++ G    AL  F +M    ++ N  TL   
Sbjct: 700 CGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGV 759

Query: 361 LNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR- 418
           L+ CS +  +  G     S+  + G          +V M  + G +  A+   +   ++ 
Sbjct: 760 LSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKP 819

Query: 419 DTASW-----------NMMIGGYVKHGLGE 437
           D   W           NM IG +  H L E
Sbjct: 820 DALVWRTLLSACVVHKNMEIGEFAAHHLLE 849



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 115/452 (25%), Positives = 218/452 (48%), Gaps = 15/452 (3%)

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTET-GDQRCGESIHAV 177
           ++ AI   + +    QE  K  + +    ++PN   L  L+    +T G    G  +H+ 
Sbjct: 13  SFAAISVYISEDESFQE--KRIDSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQ 70

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
           I K G +S+  +   L   Y+  G +    +VF+ +  +   +WN +           + 
Sbjct: 71  ILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEV 130

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFG--KQLHAHTIKHSLDGNHVVGTSLV 295
             +F +M+ +   PN  TF  +L+AC   S V F   +Q+HA  +   L  + VV   L+
Sbjct: 131 FGLFVRMVSENVTPNEGTFSGVLEACRGGS-VAFDVVEQIHARILYQGLRDSTVVCNPLI 189

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
           D+Y ++G ++ A   FD L  KD  ++ A+I+  ++      A++ F  M + GI    +
Sbjct: 190 DLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPY 249

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
             +S L+ C  + +L  G  LH + +K G   D +V  ALV++Y   G++  AE +F   
Sbjct: 250 AFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNM 309

Query: 416 ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           + RD  ++N +I G  + G GEKA+E F+ M  +G  PD  T   ++ ACS  G +  G+
Sbjct: 310 SQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQ 369

Query: 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
           +  +   K+ G     K    ++++  +        ++  ET++  N ++W  +L A   
Sbjct: 370 QLHAYTTKL-GFASNNKIEGALLNLYAKCADIETALDYFLETEV-ENVVLWNVMLVA--- 424

Query: 536 HGNIELDEKDAEKL---LELEPKMESNYVFPS 564
           +G ++ D +++ ++   +++E  + + Y +PS
Sbjct: 425 YGLLD-DLRNSFRIFRQMQIEEIVPNQYTYPS 455


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/596 (34%), Positives = 339/596 (56%), Gaps = 7/596 (1%)

Query: 11  MPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAG 70
           MP+ NVVSWN+L++GY + G   +VM+LF   +  + +  KF+ S  L     +  ++ G
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 71  QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
           +++HA+    G      L+ SL+DMY KCG  D A  VF    + D V+W ++I    + 
Sbjct: 61  RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRI 120

Query: 131 GCCQEAAKIFNLMRESSVKPNQFVLTSLVRA--TTETGDQRCGESIHAVICKYGFESDTL 188
           G   E  ++   M    +  N + L S ++A  +  +    CG+ +H    K G + D +
Sbjct: 121 GSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVV 180

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES-----PDQGLRIFYQ 243
           VG AL+  Y + G +   +++F+ +   + V +NA+ + F   E+      ++ + +F++
Sbjct: 181 VGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFE 240

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +G KP+  TF  ILKACS++     GKQ+HA   K++L  +  +G +LV++Y  SG 
Sbjct: 241 MQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGS 300

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +ED    F S    D+ ++T++I  + Q G+ E  L  F ++   G K +EFT++  L+ 
Sbjct: 301 IEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSA 360

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +A + +G  +H+ A+KTG      +  + + MYAKCG ID A   FK +   D  SW
Sbjct: 361 CANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSW 420

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           ++MI    +HG  ++A++ F +M   G  P+ ITF+ VL ACSH GL+EEG ++F  +KK
Sbjct: 421 SVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKK 480

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            +GITP +KH AC++D+LGRAG+  E E+FI ++    + ++W +LL AC  H   +  +
Sbjct: 481 DHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTGK 540

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           + AE+++ELEP+  ++YV   +I    G     + +R L+  +G+KKEP  SWIEV
Sbjct: 541 RVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEV 596



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 133/442 (30%), Positives = 225/442 (50%), Gaps = 9/442 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK- 59
           ++ A+ VF+S  EL+ VSWN+L+ GY   G   +++ L   M       + ++L + LK 
Sbjct: 92  IDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKA 151

Query: 60  -GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
            G   S  I+ G+++H  A++LG  LD  +  +L+D Y+K G  ++A K+F  + DP+VV
Sbjct: 152 CGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVV 211

Query: 119 AWGAIITCLDQQGC-----CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES 173
            + A+I    Q          EA  +F  M+   +KP++F  +S+++A +      CG+ 
Sbjct: 212 MYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQ 271

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           IHA I KY  +SD  +GNALV +Y  +G +  G + F +    D VSW +L         
Sbjct: 272 IHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQ 331

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
            + GL +F+++L  G KP+  T  ++L AC++L+ V  G+Q+HA+ IK  +    ++  S
Sbjct: 332 FEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNS 391

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
            + MY K G ++ A + F    N D+ +++ +I+S AQ G A+ A+  F  M+  GI  N
Sbjct: 392 QICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPN 451

Query: 354 EFTLASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
             T    L  CS    +  G R    +    G   ++  S  +V +  + G + +AE+  
Sbjct: 452 HITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFI 511

Query: 413 KGSALR-DTASWNMMIGGYVKH 433
             S    D   W  ++     H
Sbjct: 512 MDSGFEGDPVMWRSLLSACRVH 533



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 123/237 (51%), Gaps = 2/237 (0%)

Query: 6   RVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSG 65
           + F S P+L+VVSW +L+ G+ ++G  +  + LF  +    +K  +F++S +L   AN  
Sbjct: 306 KCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLA 365

Query: 66  YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT 125
            +K+G+ +HA AI+ G      +  S + MY+KCG  D+A   F   K+PD+V+W  +I+
Sbjct: 366 AVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMIS 425

Query: 126 CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK-YGFE 184
              Q GC +EA  +F LM+ S + PN      ++ A +  G    G     ++ K +G  
Sbjct: 426 SNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGIT 485

Query: 185 SDTLVGNALVSMYMENGRVSYG-SRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            +      +V +    GR++   S + ++    D V W +L S  + +++ D G R+
Sbjct: 486 PNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRV 542


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/596 (33%), Positives = 328/596 (55%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F +M + + V++N L+NG ++ G G+K M LF  M     +    +L++++   + 
Sbjct: 342 AEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSA 401

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G +  GQ +HA   +LG A +  +  +L+++Y+KC   + AL  F   +  +VV W  +
Sbjct: 402 DGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVM 461

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +         + + +IF  M+   + PNQ+   S+++     GD   GE IH+ I K  F
Sbjct: 462 LVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNF 521

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           + +  V + L+ MY + G++     +    A +D VSW  + + +  Y   D+ L  F Q
Sbjct: 522 QLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQ 581

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           ML +G + +       + AC+ L  +  G+Q+HA         +     +LV +Y + G 
Sbjct: 582 MLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGK 641

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +E++ +AF+     D  A+ A+++ + Q+G  E AL+ F +M  EGI +N FT  S +  
Sbjct: 642 IEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKA 701

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
            S  A +  G+ +H++  KTG+  +  V  AL++MYAKCGSI DAE  F   + ++  SW
Sbjct: 702 ASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSW 761

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I  Y KHG G +AL++F  M+     P+ +T V VLSACSH+GL+++G  +F S+  
Sbjct: 762 NAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNS 821

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            YG++P  +H+ C++D+L RAG  +  + FI E  + P+ALVW  LL AC  H N+E+ E
Sbjct: 822 EYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGE 881

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
             A  LLELEP+  + YV  S++ A   +W+     R  +  +G+KKEP  SWIEV
Sbjct: 882 FAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEV 937



 Score =  242 bits (617), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 150/537 (27%), Positives = 266/537 (49%), Gaps = 2/537 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++LA+RVF  +   +  SW A+++G +++    + + LFC M  +    + ++ S+VL  
Sbjct: 238 VDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSA 297

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 ++ G+ +H + ++LG + D ++  +LV +Y   G   +A  +F  +   D V +
Sbjct: 298 CKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTY 357

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I  L Q G  ++A ++F  M    ++P+   L SLV A +  G    G+ +HA   K
Sbjct: 358 NTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTK 417

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GF S+  +  AL+++Y +   +      F     ++ V WN +   +   +      RI
Sbjct: 418 LGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRI 477

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QM ++   PN  T+  ILK C  L D+  G+Q+H+  IK +   N  V + L+DMY K
Sbjct: 478 FRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAK 537

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L+ A       A KD+ ++T +I  Y Q    + AL  FR+M   GI+S+E  L + 
Sbjct: 538 LGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNA 597

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           ++ C+ +  L  G+ +H+ A  +G   D+    ALV +Y++CG I+++   F+ +   D 
Sbjct: 598 VSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDN 657

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            +WN ++ G+ + G  E+AL  F  M  EG   +  TF   + A S    +++GK+  + 
Sbjct: 658 IAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAV 717

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           I K  G     +    +I +  + G  ++ E    E   T N + W  ++ A S HG
Sbjct: 718 ITKT-GYDSETEVCNALISMYAKCGSISDAEKQFLEVS-TKNEVSWNAIINAYSKHG 772



 Score =  241 bits (615), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 162/594 (27%), Positives = 284/594 (47%), Gaps = 12/594 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG-FA 62
           A +VF  MPE  + +WN ++   A      +V  LF  M       ++ + S VL+    
Sbjct: 139 AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG 198

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
            S      + +HA  +  G      +   L+D+YS+ G  D A +VF  ++  D  +W A
Sbjct: 199 GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVA 258

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I+ L +  C  EA ++F  M    + P  +  +S++ A  +      GE +H ++ K G
Sbjct: 259 MISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 318

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F SDT V NALVS+Y   G +     +F  ++ +D+V++N L +        ++ + +F 
Sbjct: 319 FSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFK 378

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M L G +P+  T   ++ ACS+   +  G+QLHA+T K     N+ +  +L+++Y K  
Sbjct: 379 RMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCA 438

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            +E A   F     +++  +  ++ +Y    +   + + FR+M++E I  N++T  S L 
Sbjct: 439 DIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILK 498

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C  +  L  G  +HS  +KT   L+ +V + L+ MYAK G +D A  +    A +D  S
Sbjct: 499 TCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVS 558

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           W  MI GY ++   +KAL  FR MLD G   DE+     +SAC+ +  ++EG++   +  
Sbjct: 559 WTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQ-IHAQA 617

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
            + G +  +     ++ +  R GK  E      +T+   N + W  L+      GN E  
Sbjct: 618 CVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDN-IAWNALVSGFQQSGNNE-- 674

Query: 543 EKDAEKL---LELEPKMESNYVFPSDISATQGRWNDFSG--VRALLSSQGIKKE 591
             +A ++   +  E    +N+ F S + A     N   G  V A+++  G   E
Sbjct: 675 --EALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSE 726



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 132/465 (28%), Positives = 214/465 (46%), Gaps = 19/465 (4%)

Query: 53  SLSTVLKG-FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYR 111
           +L  +L+G    +G +  G+ +H+  ++LG   +  LS  L D Y   G    A KVF  
Sbjct: 86  TLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDE 145

Query: 112 IKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG 171
           + +  +  W  +I  L  +    E   +F  M   +V PN+   + ++ A       R G
Sbjct: 146 MPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC------RGG 199

Query: 172 -------ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNAL 224
                  E IHA I   G    T+V N L+ +Y  NG V    RVF+ +  +D  SW A+
Sbjct: 200 SVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAM 259

Query: 225 FSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL 284
            S     E   + +R+F  M + G  P    F  +L AC  +  +  G+QLH   +K   
Sbjct: 260 ISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGF 319

Query: 285 DGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRK 344
             +  V  +LV +Y   G L  A   F +++ +D   Y  +I   +Q G  E A++ F++
Sbjct: 320 SSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKR 379

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404
           M L+G++ +  TLAS +  CS   TL  G+ LH+   K G   +  +  AL+ +YAKC  
Sbjct: 380 MHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCAD 439

Query: 405 IDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
           I+ A   F  + + +   WN+M+  Y        +   FR M  E  VP++ T+  +L  
Sbjct: 440 IETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKT 499

Query: 465 CSHMGLIEEGKKHFSSIKKIYGITPTIKHFAC--MIDILGRAGKF 507
           C  +G +E G++  S I K       +  + C  +ID+  + GK 
Sbjct: 500 CIRLGDLELGEQIHSQIIK---TNFQLNAYVCSVLIDMYAKLGKL 541



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 127/450 (28%), Positives = 206/450 (45%), Gaps = 13/450 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A   F      NVV WN +L  Y    D +    +F  M+  E   ++++  ++LK 
Sbjct: 440 IETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKT 499

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
               G ++ G+ +H+  I+    L+ ++   L+DMY+K G  D A  +  R    DVV+W
Sbjct: 500 CIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSW 559

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I    Q     +A   F  M +  ++ ++  LT+ V A       + G+ IHA  C 
Sbjct: 560 TTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACV 619

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GF SD    NALV++Y   G++      FE     D+++WNAL S FQ   + ++ LR+
Sbjct: 620 SGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRV 679

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M  +G   N  TF   +KA S  +++  GKQ+HA   K   D    V  +L+ MY K
Sbjct: 680 FVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAK 739

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G + DA   F  ++ K+  ++ AII +Y++ G    AL  F +M    ++ N  TL   
Sbjct: 740 CGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGV 799

Query: 361 LNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR- 418
           L+ CS +  +  G     S+  + G          +V M  + G +  A+   +   ++ 
Sbjct: 800 LSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKP 859

Query: 419 DTASW-----------NMMIGGYVKHGLGE 437
           D   W           NM IG +  H L E
Sbjct: 860 DALVWRTLLSACVVHKNMEIGEFAAHHLLE 889



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 115/452 (25%), Positives = 218/452 (48%), Gaps = 15/452 (3%)

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTET-GDQRCGESIHAV 177
           ++ AI   + +    QE  K  + +    ++PN   L  L+    +T G    G  +H+ 
Sbjct: 53  SFAAISVYISEDESFQE--KRIDSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQ 110

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
           I K G +S+  +   L   Y+  G +    +VF+ +  +   +WN +           + 
Sbjct: 111 ILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEV 170

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFG--KQLHAHTIKHSLDGNHVVGTSLV 295
             +F +M+ +   PN  TF  +L+AC   S V F   +Q+HA  +   L  + VV   L+
Sbjct: 171 FGLFVRMVSENVTPNEGTFSGVLEACRGGS-VAFDVVEQIHARILYQGLRDSTVVCNPLI 229

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
           D+Y ++G ++ A   FD L  KD  ++ A+I+  ++      A++ F  M + GI    +
Sbjct: 230 DLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPY 289

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
             +S L+ C  + +L  G  LH + +K G   D +V  ALV++Y   G++  AE +F   
Sbjct: 290 AFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNM 349

Query: 416 ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           + RD  ++N +I G  + G GEKA+E F+ M  +G  PD  T   ++ ACS  G +  G+
Sbjct: 350 SQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQ 409

Query: 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
           +  +   K+ G     K    ++++  +        ++  ET++  N ++W  +L A   
Sbjct: 410 QLHAYTTKL-GFASNNKIEGALLNLYAKCADIETALDYFLETEV-ENVVLWNVMLVA--- 464

Query: 536 HGNIELDEKDAEKL---LELEPKMESNYVFPS 564
           +G ++ D +++ ++   +++E  + + Y +PS
Sbjct: 465 YGLLD-DLRNSFRIFRQMQIEEIVPNQYTYPS 495


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/535 (37%), Positives = 306/535 (57%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           ++ G+ VHA  ++ G   +++L  +L+ MY+KCG   +A +VF  I+D ++V+W A+I  
Sbjct: 112 LEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEA 171

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
                   EA K +  M+ +  KP++    SL+ A T     + G+ +H  I K G E +
Sbjct: 172 FVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELE 231

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             VG +LV MY + G +S    +F+ +  ++ V+W  L + +      D  L +  +M  
Sbjct: 232 PRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQ 291

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
               PN  T+  IL+ C++   +  GK++H + I+        V  +L+ MY K G L++
Sbjct: 292 AEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKE 351

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A   F  L ++D+  +TA++T YAQ G  + A+  FR+M+ +GIK ++ T  S L  CS 
Sbjct: 352 ARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSS 411

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
            A L  G+ +H   V  G+ LD+++ +ALV+MYAKCGS+DDA  VF   + R+  +W  M
Sbjct: 412 PAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAM 471

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           I G  +HG   +ALE F  M  +G  PD++TF  VLSAC+H+GL+EEG+KHF S+   YG
Sbjct: 472 ITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYG 531

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDA 546
           I P ++H++C +D+LGRAG   E EN I      P   VW  LL AC  H ++E  E+ A
Sbjct: 532 IKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAA 591

Query: 547 EKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           E +L+L+P  +  YV  S+I A  GR+ D   VR ++  + + KEP  SWIEVDG
Sbjct: 592 ENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDG 646



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 129/458 (28%), Positives = 226/458 (49%), Gaps = 17/458 (3%)

Query: 116 DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH 175
           D +A    ++ L +QG  +EA  I N M     +    V   L++          G  +H
Sbjct: 60  DTLANSGDVSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVH 119

Query: 176 AVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD 235
           A I K G + +  + N L+SMY + G ++   RVF+ I  ++ VSW A+   F       
Sbjct: 120 AAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNL 179

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
           +  + +  M L G KP+  TF+ +L A ++   +  G+++H    K  L+    VGTSLV
Sbjct: 180 EAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLV 239

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
            MY K G +  A V FD L  K++  +T +I  YAQ G+ ++AL+   KM+   +  N+ 
Sbjct: 240 GMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKI 299

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
           T  S L GC+    L +G+ +H   +++G+  +++V  AL+ MY KCG + +A  +F   
Sbjct: 300 TYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDL 359

Query: 416 ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
             RD  +W  M+ GY + G  ++A++ FR M  +G  PD++TF   L++CS    ++EGK
Sbjct: 360 PHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGK 419

Query: 476 K-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTE---IENFITETKLTPNALVWENLLG 531
             H   +   Y +   ++  + ++ +  + G   +   + N ++E     N + W  ++ 
Sbjct: 420 SIHQQLVHAGYSLDVYLQ--SALVSMYAKCGSMDDARLVFNQMSER----NVVAWTAMIT 473

Query: 532 ACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISAT 569
            C+ HG          + LE   +M+   + P  ++ T
Sbjct: 474 GCAQHGR-------CREALEYFEQMKKQGIKPDKVTFT 504



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 131/465 (28%), Positives = 232/465 (49%), Gaps = 10/465 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+RVF  + + N+VSW A++  +       +    + +MK    K  K +  ++L  F N
Sbjct: 150 ARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTN 209

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ GQ VH    + G  L+  +  SLV MY+KCG    A  +F ++ + +VV W  +
Sbjct: 210 PELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLL 269

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    QQG    A ++   M+++ V PN+   TS+++  T       G+ +H  I + G+
Sbjct: 270 IAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGY 329

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             +  V NAL++MY + G +    ++F  + H+D V+W A+ + +      D+ + +F +
Sbjct: 330 GREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRR 389

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +G KP+  TF   L +CSS + +  GK +H   +      +  + ++LV MY K G 
Sbjct: 390 MQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGS 449

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++DA + F+ ++ +++ A+TA+IT  AQ G    AL+ F +M+ +GIK ++ T  S L+ 
Sbjct: 450 MDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSA 509

Query: 364 CSPVATLANGRL-LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
           C+ V  +  GR    S+ +  G    +   +  V +  + G +++AE V      +   S
Sbjct: 510 CTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPS 569

Query: 423 -WNMMIGGYVKHG---LGEKALEAFRMMLDEGYVPDEITFVVVLS 463
            W  ++     H     GE+A E   + LD    PD+    V LS
Sbjct: 570 VWGALLSACRIHSDVERGERAAENV-LKLD----PDDDGAYVALS 609



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 6/129 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A+ VF  M E NVV+W A++ G A+ G  ++ +  F  MK    K  K + ++VL  
Sbjct: 450 MDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSA 509

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFL---SCSLVDMYSKCGLADNALKVFYRIK-DPD 116
             + G ++ G+  H  ++ L   +   +   SC  VD+  + G  + A  V   +   P 
Sbjct: 510 CTHVGLVEEGR-KHFRSMYLDYGIKPMVEHYSC-FVDLLGRAGHLEEAENVILTMPFQPG 567

Query: 117 VVAWGAIIT 125
              WGA+++
Sbjct: 568 PSVWGALLS 576


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/598 (33%), Positives = 335/598 (56%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           +LA+RVF  M   + V++N L++G+A+ G G+  + +F  M+    +    +++++L   
Sbjct: 196 KLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAAC 255

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           A+ G ++ G+ +H+  ++ G + D     SL+D+Y KCG  + A  +F      +VV W 
Sbjct: 256 ASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWN 315

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            ++    Q     ++ +IF  M+ + + PN+F    ++R  T TG    GE IH++  K 
Sbjct: 316 LMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKN 375

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           GFESD  V   L+ MY +   +    ++ E +  +D VSW ++ + +  ++  ++ L  F
Sbjct: 376 GFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATF 435

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M   G  P+         AC+ +  +  G Q+HA         +  +  +LV++Y + 
Sbjct: 436 KEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARC 495

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G  E+A   F  + +KD   +  +I+ + Q+   E AL  F KM   G K N FT  S +
Sbjct: 496 GRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAI 555

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           +  + +A +  G+ +H  AVKTGH  +  V+ AL+++Y KCGSI+DA+ +F   +LR+  
Sbjct: 556 SALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEV 615

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SWN +I    +HG G +AL+ F  M  EG  P+++TF+ VL+ACSH+GL+EEG  +F S+
Sbjct: 616 SWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSM 675

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
             +YG+ P   H+AC++DILGRAG+      F+ E  +T NA++W  LL AC  H NIE+
Sbjct: 676 SNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEI 735

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            E  A+ LLELEP   ++YV  S+  A  G+W +   VR ++  +GI+KEP  SWIEV
Sbjct: 736 GELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEV 793



 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 157/589 (26%), Positives = 290/589 (49%), Gaps = 19/589 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VFK +   + VSW A+L+GYA+ G G++   L+  M       + + LS+VL     
Sbjct: 97  ARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTK 156

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G+++HA   +     + F+  +L+ +Y   G    A +VF  +   D V +  +
Sbjct: 157 GKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTL 216

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   Q G  + A +IF+ M+ S ++P+   + SL+ A    GD + G+ +H+ + K G 
Sbjct: 217 ISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGM 276

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D +   +L+ +Y++ G +     +F      + V WN +   +       +   IF Q
Sbjct: 277 SFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQ 336

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G  PN  T+  IL+ C+    +  G+Q+H+ +IK+  + +  V   L+DMY K  C
Sbjct: 337 MQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRC 396

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L+ A    + L  +D+ ++T++I  Y Q    E AL  F++M+  G+  +   LAS  + 
Sbjct: 397 LDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASA 456

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +  +  G  +H+    +G+  D+ +   LV +YA+CG  ++A ++F+    +D  +W
Sbjct: 457 CAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITW 516

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK 482
           N +I G+ +  L E+AL  F  M   G   +  TF+  +SA +++  I++GK+ H  ++K
Sbjct: 517 NGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVK 576

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
              G T   +    +I + G+ G   + +   +E  L  N + W  ++ +CS HG     
Sbjct: 577 T--GHTSETEVANALISLYGKCGSIEDAKMIFSEMSLR-NEVSWNTIITSCSQHGR---- 629

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
                + L+L  +M+   + P+D++        F GV A  S  G+ +E
Sbjct: 630 ---GLEALDLFDQMKQEGLKPNDVT--------FIGVLAACSHVGLVEE 667



 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 138/458 (30%), Positives = 239/458 (52%), Gaps = 2/458 (0%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           +HA ++  G   D+ +   L+D+Y+K GL   A +VF  +   D V+W A+++   Q+G 
Sbjct: 65  IHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGL 124

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
            +EA ++++ M  ++V P  +VL+S++ A T+      G  IHA + K  F S+T VGNA
Sbjct: 125 GKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNA 184

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           L+++Y+  G      RVF  +   D V++N L S        +  L+IF +M L G +P+
Sbjct: 185 LIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPD 244

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
             T   +L AC+S+ D+  GKQLH++ +K  +  +++   SL+D+Y K G +E A   F+
Sbjct: 245 CVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFN 304

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
                ++  +  ++ +Y Q  +   + + F +M+  GI  N+FT    L  C+    +  
Sbjct: 305 LGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIEL 364

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
           G  +HS+++K G   DM+VS  L+ MY+K   +D A  + +    RD  SW  MI GYV+
Sbjct: 365 GEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQ 424

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK 492
           H   E+AL  F+ M D G  PD I      SAC+ +  + +G +  + +  + G    I 
Sbjct: 425 HDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARV-YVSGYAADIS 483

Query: 493 HFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
            +  ++++  R G+  E  +   E     + + W  L+
Sbjct: 484 IWNTLVNLYARCGRSEEAFSLFREID-HKDEITWNGLI 520



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 119/373 (31%), Positives = 188/373 (50%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  +F      NVV WN +L  Y +  D  K   +F  M+      +KF+   +L+ 
Sbjct: 296 IETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRT 355

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              +G I+ G+ +H+++I+ G   D ++S  L+DMYSK    D A K+   ++  DVV+W
Sbjct: 356 CTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSW 415

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I    Q   C+EA   F  M++  V P+   L S   A       R G  IHA +  
Sbjct: 416 TSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYV 475

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G+ +D  + N LV++Y   GR      +F  I H+D ++WN L S F      +Q L +
Sbjct: 476 SGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMV 535

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M   G K N+ TFI  + A ++L+D+  GKQ+H   +K        V  +L+ +Y K
Sbjct: 536 FMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGK 595

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +EDA + F  ++ ++  ++  IITS +Q G    AL  F +M+ EG+K N+ T    
Sbjct: 596 CGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGV 655

Query: 361 LNGCSPVATLANG 373
           L  CS V  +  G
Sbjct: 656 LAACSHVGLVEEG 668



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 147/294 (50%), Gaps = 9/294 (3%)

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
           ++HA ++   L  + ++G  L+D+Y K+G +  A   F  L+++D  ++ A+++ YAQ G
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRG 123

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST 393
             + A + + +M    +    + L+S L+ C+     A GR++H+   K     + FV  
Sbjct: 124 LGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGN 183

Query: 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP 453
           AL+A+Y   GS   AE VF      D  ++N +I G+ + G GE AL+ F  M   G  P
Sbjct: 184 ALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRP 243

Query: 454 DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENF 513
           D +T   +L+AC+ +G +++GK+  S + K  G++        ++D+  + G      + 
Sbjct: 244 DCVTVASLLAACASVGDLQKGKQLHSYLLKA-GMSFDYITEGSLLDLYVKCGDIETAHDI 302

Query: 514 ITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
                 T N ++W  +L A   +G I     D  K  E+  +M++  + P+  +
Sbjct: 303 FNLGDRT-NVVLWNLMLVA---YGQIS----DLAKSFEIFGQMQATGIHPNKFT 348


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/628 (32%), Positives = 343/628 (54%), Gaps = 33/628 (5%)

Query: 6   RVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSG 65
           +VF  M E N V+WN++++  A+ G     + LF  M++   K ++F+L ++L   A   
Sbjct: 332 KVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLA 391

Query: 66  YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT 125
            I  G+ +H   +R     D  L  +LVDMYSKCG+ + A +VF  + + + V++ A++ 
Sbjct: 392 DIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLA 451

Query: 126 CLDQQGCCQEAAKIFNLMR-ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
              Q+G  +EA ++++ M+ E  ++P+QF  T+L+       +   G  IHA + +    
Sbjct: 452 GYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANIT 511

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
            + +V   LV MY E GR++Y   +F  +A +++ SWN++   +Q      + LR+F QM
Sbjct: 512 KNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQM 571

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
            L G KP+  +   +L +C SLSD   G++LH   ++++++   ++   LVDMY K G +
Sbjct: 572 QLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSM 631

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL---------------EG 349
           + A   +D    KD+     +++++  +G A  A   F +M                 +G
Sbjct: 632 DYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKG 691

Query: 350 IKSNEF----------------TLASCLNGCSPVATLANGRLLHSIAVKTGHL-LDMFVS 392
           +K   F                T+ + +N CS +  L +G  LHS+ +K G +   + + 
Sbjct: 692 LKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLE 751

Query: 393 TALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV 452
           TALV MY+KCG+I  A  VF     ++  SWN MI GY KHG  ++AL  +  M  +G  
Sbjct: 752 TALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMY 811

Query: 453 PDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIEN 512
           P+E+TF+ +LSACSH GL+EEG + F+S+++ Y I    +H+ CM+D+LGRAG+  + + 
Sbjct: 812 PNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKE 871

Query: 513 FITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGR 572
           F+ +  + P    W  LLGAC  H ++++    A++L EL+P+    YV  S+I A  GR
Sbjct: 872 FVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGR 931

Query: 573 WNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           W +   +R ++  +G+KK+P  SWIE++
Sbjct: 932 WKEVEDIRQMMKMKGVKKDPGVSWIEIN 959



 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 143/474 (30%), Positives = 256/474 (54%), Gaps = 1/474 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F+ MPE N+ +WN ++  YA   D  +V+ L+  M+       KF+  +V+K    
Sbjct: 128 ARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIA 187

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +   + + +  ++ G   + F+  +LVD Y++ G  D+A+     I+   VV W A+
Sbjct: 188 MEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAV 247

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    +    +EA  IF+ M +  V P+ F   S +R       +  G+ +H+ +   GF
Sbjct: 248 IAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGF 307

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           + DT VGNAL+ MY +        +VF+ +  ++ V+WN++ S    +   +  L +F +
Sbjct: 308 KGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLR 367

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G+K N      IL A + L+D+G G++LH H +++ L+ + ++G++LVDMY K G 
Sbjct: 368 MQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGM 427

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE-GIKSNEFTLASCLN 362
           +E+A   F SL  ++  +Y A++  Y Q G+AE AL+ +  M+ E GI+ ++FT  + L 
Sbjct: 428 VEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLT 487

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+       GR +H+  ++     ++ V T LV MY++CG ++ A+ +F   A R+  S
Sbjct: 488 LCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYS 547

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
           WN MI GY ++G  ++AL  F+ M   G  PD  +   +LS+C  +   ++G++
Sbjct: 548 WNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRE 601



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 141/516 (27%), Positives = 244/516 (47%), Gaps = 19/516 (3%)

Query: 55  STVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADN---ALKVFYR 111
           S++++   +S   + G+ +H   I  G   D +L   ++ +Y++ G  D+   A K+F  
Sbjct: 75  SSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEE 134

Query: 112 IKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG 171
           + + ++ AW  +I    +     E  +++  MR S    ++F   S+++A     D    
Sbjct: 135 MPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGV 194

Query: 172 ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY 231
             + + + K G   +  VG ALV  Y   G +       + I     V+WNA+ + +   
Sbjct: 195 RQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKI 254

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
            S ++   IF +ML  G  P+  TF   L+ C +L     GKQ+H+  I     G+  VG
Sbjct: 255 LSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVG 314

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
            +L+DMY K    E     FD +  ++   + +II++ AQ G    AL  F +M+  G K
Sbjct: 315 NALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYK 374

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
           SN F L S L   + +A +  GR LH   V+     D+ + +ALV MY+KCG +++A  V
Sbjct: 375 SNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQV 434

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFR-MMLDEGYVPDEITFVVVLSACSHMGL 470
           F+    R+  S+N ++ GYV+ G  E+ALE +  M  ++G  PD+ TF  +L+ C++   
Sbjct: 435 FRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRN 494

Query: 471 IEEGKKHFSSIKKIYGITPTI---KHFACMIDILGRAGKFTEIENFITETKLTPNALVWE 527
             +G++  + + +   IT  I        M    GR     EI N + E     NA  W 
Sbjct: 495 DNQGRQIHAHLIRA-NITKNIIVETELVHMYSECGRLNYAKEIFNRMAER----NAYSWN 549

Query: 528 NLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFP 563
           +++     +G       + ++ L L  +M+ N + P
Sbjct: 550 SMIEGYQQNG-------ETQEALRLFKQMQLNGIKP 578



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 123/474 (25%), Positives = 232/474 (48%), Gaps = 47/474 (9%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLK 59
           +E A +VF+S+ E N VS+NALL GY + G  ++ + L+  M+  +  +  +F+ +T+L 
Sbjct: 428 VEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLT 487

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             AN      G+ +HA  IR     +  +   LV MYS+CG  + A ++F R+ + +  +
Sbjct: 488 LCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYS 547

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W ++I    Q G  QEA ++F  M+ + +KP+ F L+S++ +     D + G  +H  I 
Sbjct: 548 WNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIV 607

Query: 180 KYGFES-------------------------------DTLVGNALVSMYMENGRVSYGSR 208
           +   E                                D ++ N +VS ++ +GR +    
Sbjct: 608 RNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKN 667

Query: 209 VFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSD 268
           +F+ +  +++  WN++ + + +     +    F +ML    + ++ T + I+  CSSL  
Sbjct: 668 LFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPA 727

Query: 269 VGFGKQLHAHTIKHS-LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIIT 327
           +  G QLH+  IK   ++ + V+ T+LVDMY K G +  A   FD++  K++ ++ A+I+
Sbjct: 728 LEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMIS 787

Query: 328 SYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL-------HSIA 380
            Y++ G ++ AL  + +M  +G+  NE T  + L+ CS    +  G  +       ++I 
Sbjct: 788 GYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIE 847

Query: 381 VKTGHLLDMFVSTALVAMYAKCGSIDDA-EAVFKGSALRDTASWNMMIGGYVKH 433
            K  H       T +V +  + G ++DA E V K     + ++W  ++G    H
Sbjct: 848 AKAEHY------TCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVH 895



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 116/488 (23%), Positives = 221/488 (45%), Gaps = 31/488 (6%)

Query: 109 FYRIKDPDVVAW----GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTE 164
           F+ + +P+  ++    G   T +  +    ++ K  ++  + +   N    +SL++   +
Sbjct: 24  FFLLPNPNSKSFSAHFGHTTTTIKLKFNGPDSPKPTSIHTKPASDVNPLPYSSLIQDCID 83

Query: 165 TGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENG---RVSYGSRVFEAIAHQDSVSW 221
           +   + G+SIH  +   G+  D  +   ++ +Y  +G    + Y  ++FE +  ++  +W
Sbjct: 84  SNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAW 143

Query: 222 NAL---FSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAH 278
           N +   ++R  DY    + LR++ +M   G   +  TF  ++KAC ++ D+G  +QL + 
Sbjct: 144 NTMILAYARVDDYM---EVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSS 200

Query: 279 TIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMA 338
            +K  L+ N  VG +LVD Y + G ++DA  + D +    +  + A+I  Y +    E A
Sbjct: 201 VVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEA 260

Query: 339 LKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAM 398
              F +M   G+  + FT AS L  C  + +   G+ +HS  +  G   D FV  AL+ M
Sbjct: 261 WGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDM 320

Query: 399 YAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITF 458
           YAKC   +    VF     R+  +WN +I    + G    AL  F  M + GY  +    
Sbjct: 321 YAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNL 380

Query: 459 VVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET 517
             +L A + +  I +G++ H   ++ +  +   I   + ++D+  + G   E    +  +
Sbjct: 381 GSILMASAGLADIGKGRELHGHLVRNL--LNSDIILGSALVDMYSKCGMVEEAHQ-VFRS 437

Query: 518 KLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMES-------NYVFPSDISATQ 570
            L  N + +  LL          + E  AE+ LEL   M+S        + F + ++   
Sbjct: 438 LLERNEVSYNALLAGY-------VQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCA 490

Query: 571 GRWNDFSG 578
            + ND  G
Sbjct: 491 NQRNDNQG 498


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/588 (36%), Positives = 327/588 (55%), Gaps = 2/588 (0%)

Query: 13  ELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQV 72
           E N VSWN L++ Y ++      + +F  M     + ++F  S V+     S  ++AG+ 
Sbjct: 164 ERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRK 223

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           VHAM IR G   D F + +LVDMYSK G    A  VF ++ + DVV+W A I+     G 
Sbjct: 224 VHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGH 283

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
            Q A ++   M+ S + PN F L+S+++A   +G    G  IH  + K   +SD  +   
Sbjct: 284 DQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFG 343

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           LV MY ++G +    +VF+ I  +D V WNAL S         + L +F +M  +GF  N
Sbjct: 344 LVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVN 403

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHS-LDGNHVVGTSLVDMYDKSGCLEDAGVAF 311
             T   +LK+ +SL  +   +Q+HA   K   L  +HVV   L+D Y K  CL  A   F
Sbjct: 404 RTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVV-NGLIDSYWKCDCLNYAYRVF 462

Query: 312 DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLA 371
           +   + D+ A+T++IT+ +Q    E A+K F +M  +G+  + F L+S LN C+ ++   
Sbjct: 463 EKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYE 522

Query: 372 NGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV 431
            G+ +H+  +K   + D+F   ALV  YAKCGSI+DA+  F G   +   SW+ MIGG  
Sbjct: 523 QGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLA 582

Query: 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI 491
           +HG G++AL+ F  M+DE   P+ IT   VL AC+H GL++E K++F+S+K+++GI  T 
Sbjct: 583 QHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTE 642

Query: 492 KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551
           +H+ACMID+LGRAGK  +    +       NA VW  LL A   H + EL    AEKL  
Sbjct: 643 EHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRLAAEKLFI 702

Query: 552 LEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           LEP+    +V  ++  A+ G W+D + VR L+    +KKEP+ SW+E+
Sbjct: 703 LEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKEPAMSWVEL 750



 Score =  258 bits (660), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 163/568 (28%), Positives = 279/568 (49%), Gaps = 15/568 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+RVF  +P+   VSW++L+  Y+ +   +  +  F SM+    + ++F L  VLK   +
Sbjct: 56  ARRVFDEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPD 115

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVVAWGA 122
           +G+   G  +HA+A+  G   D F++ +LV MY   G  D A  VF     + + V+W  
Sbjct: 116 AGF---GTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNG 172

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +++   +   C  A K+F  M    V+PN+F  + +V A T + D   G  +HA++ + G
Sbjct: 173 LMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTG 232

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           ++ D    NALV MY + G +   + VF  +   D VSWNA  S    +      L +  
Sbjct: 233 YDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLL 292

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           QM   G  PN+ T   ILKAC+       G+Q+H   +K + D ++ +   LVDMY K G
Sbjct: 293 QMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHG 352

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            L+DA   FD +  +DL  + A+I+  +   +   AL  F +MR EG   N  TLA+ L 
Sbjct: 353 LLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLK 412

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
             + +  +++ R +H++A K G L D  V   L+  Y KC  ++ A  VF+     D  +
Sbjct: 413 STASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIA 472

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           +  MI    +   GE A++ F  ML +G  PD      +L+AC+ +   E+GK+  + + 
Sbjct: 473 FTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLI 532

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV-WENLLGACSWHGNIEL 541
           K   ++      A ++    + G   + +  +  + L    +V W  ++G  + HG+   
Sbjct: 533 KRQFMSDVFAGNA-LVYTYAKCGSIEDAD--LAFSGLPEKGVVSWSAMIGGLAQHGH--- 586

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISAT 569
                ++ L++  +M   ++ P+ I+ T
Sbjct: 587 ----GKRALDVFHRMVDEHISPNHITMT 610



 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 136/454 (29%), Positives = 218/454 (48%), Gaps = 5/454 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + +A  VF  +PE +VVSWNA ++G    G  Q  + L   MK      + F+LS++LK 
Sbjct: 253 IRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKA 312

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A SG    G+ +H   ++     D +++  LVDMY+K GL D+A KVF  I   D+V W
Sbjct: 313 CAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLW 372

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I+         EA  +F  MR+     N+  L +++++T           +HA+  K
Sbjct: 373 NALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEK 432

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GF SD+ V N L+  Y +   ++Y  RVFE     D +++ ++ +     +  +  +++
Sbjct: 433 LGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKL 492

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +ML KG  P+      +L AC+SLS    GKQ+HAH IK     +   G +LV  Y K
Sbjct: 493 FMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAK 552

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +EDA +AF  L  K + +++A+I   AQ G  + AL  F +M  E I  N  T+ S 
Sbjct: 553 CGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSV 612

Query: 361 LNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
           L  C+    +    R  +S+    G          ++ +  + G +DDA  +      + 
Sbjct: 613 LCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQT 672

Query: 420 TAS-WNMMIGGYVKHG---LGEKALEAFRMMLDE 449
            A+ W  ++     H    LG  A E   ++  E
Sbjct: 673 NAAVWGALLAASRVHRDPELGRLAAEKLFILEPE 706



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 130/425 (30%), Positives = 207/425 (48%), Gaps = 6/425 (1%)

Query: 53  SLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI 112
           ++  +L  +A +  +  G  +HA  ++ G  L       L+  YSKC L  +A +VF  I
Sbjct: 6   TIGPLLTRYAATQSLLQGAHIHAHLLKSG--LFAVFRNHLLSFYSKCRLPGSARRVFDEI 63

Query: 113 KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172
            DP  V+W +++T        ++A   F  MR  SV+ N+FVL  +++   + G    G 
Sbjct: 64  PDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDAG---FGT 120

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF-EAIAHQDSVSWNALFSRFQDY 231
            +HA+    G   D  V NALV+MY   G V     VF EA   +++VSWN L S +   
Sbjct: 121 QLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKN 180

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
           +     +++F +M+  G +PN   F  ++ AC+   D+  G+++HA  I+   D +    
Sbjct: 181 DRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTA 240

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
            +LVDMY K G +  A V F  +   D+ ++ A I+     G  + AL+   +M+  G+ 
Sbjct: 241 NALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLV 300

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            N FTL+S L  C+       GR +H   VK     D +++  LV MYAK G +DDA+ V
Sbjct: 301 PNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKV 360

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F     RD   WN +I G        +AL  F  M  EG+  +  T   VL + + +  I
Sbjct: 361 FDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAI 420

Query: 472 EEGKK 476
            + ++
Sbjct: 421 SDTRQ 425


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Glycine max]
          Length = 1033

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 225/609 (36%), Positives = 343/609 (56%), Gaps = 13/609 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AK +F+ M + N V+ N L+ G A    G++   +F  MKD+  + +  S + +L  F  
Sbjct: 304 AKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDL-VEINASSYAVLLSAFTE 362

Query: 64  SGYIK----AGQVVHAMAIRLGCALDKFL--SCSLVDMYSKCGLADNALKVFYRIKDPDV 117
              +K     GQ VHA  IR    +D ++    +LV++Y+KC   DNA  +F  +   D 
Sbjct: 363 FSNLKEGKRKGQEVHAYLIR-NALVDVWILIGNALVNLYAKCNAIDNARSIFQLMPSKDT 421

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           V+W +II+ LD     +EA   F+ MR + + P++F + S + +    G    G+ IH  
Sbjct: 422 VSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLGWIMLGQQIHGE 481

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE-SPDQ 236
             K G + D  V NAL+++Y E   +    +VF  +   D VSWN+        E S  Q
Sbjct: 482 GIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQVSWNSFIGALATSEASVLQ 541

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            ++ F +M+  G+KPN  TFI IL A SSLS +  G+Q+HA  +KHS+  ++ +  +L+ 
Sbjct: 542 AIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLELGRQIHALILKHSVADDNAIENTLLA 601

Query: 297 MYDKSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
            Y K   +ED  + F  ++  +D  ++ A+I+ Y   G    A+     M  +G + ++F
Sbjct: 602 FYGKCEQMEDCEIIFSRMSERRDEVSWNAMISGYIHNGILHKAMGLVWLMMQKGQRLDDF 661

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
           TLA+ L+ C+ VATL  G  +H+ A++     ++ V +ALV MYAKCG ID A   F+  
Sbjct: 662 TLATVLSACASVATLERGMEVHACAIRACLEAEVVVGSALVDMYAKCGKIDYASRFFELM 721

Query: 416 ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
            +R+  SWN MI GY +HG G KAL+ F  M   G +PD +TFV VLSACSH+GL++EG 
Sbjct: 722 PVRNIYSWNSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVGVLSACSHVGLVDEGF 781

Query: 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
           +HF S+ ++Y + P I+HF+CM+D+LGRAG   ++E FI    + PNAL+W  +LGAC  
Sbjct: 782 EHFKSMGEVYELAPRIEHFSCMVDLLGRAGDVKKLEEFIKTMPMNPNALIWRTILGACCR 841

Query: 536 HG--NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPS 593
               N EL  + A+ L+ELEP    NYV  S++ A  G+W D    R  + +  +KKE  
Sbjct: 842 ANSRNTELGRRAAKMLIELEPLNAVNYVLLSNMHAAGGKWEDVEEARLAMRNAEVKKEAG 901

Query: 594 CSWIEV-DG 601
           CSW+ + DG
Sbjct: 902 CSWVTMKDG 910



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 134/473 (28%), Positives = 242/473 (51%), Gaps = 20/473 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F  MP+ N+VSW+ L++GYA++G   +   LF  +       + +++ + L+    
Sbjct: 93  AQKLFDEMPQKNLVSWSCLVSGYAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQE 152

Query: 64  SG--YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLA-DNALKVFYRIKDPDVVAW 120
            G   +K G  +H +  +   A D  LS  L+ MYS C  + D+A +VF  IK     +W
Sbjct: 153 LGPNMLKLGMEIHGLISKSPYASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASW 212

Query: 121 GAIITCLDQQGCCQEAAKIFNLMR----ESSVKPNQFVLTSLVRATTETGDQRCG----E 172
            +II+   ++G    A K+F+ M+    E + +PN++   SLV       D  CG    E
Sbjct: 213 NSIISVYCRRGDAISAFKLFSSMQREATELNCRPNEYTFCSLVTVACSLVD--CGLTLLE 270

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
            + A I K  F  D  VG+ALVS +   G +     +FE +  +++V+ N L        
Sbjct: 271 QMLARIEKSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQH 330

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGK----QLHAHTIKHSL-DGN 287
             ++  +IF +M     + N  ++ V+L A +  S++  GK    ++HA+ I+++L D  
Sbjct: 331 QGEEAAKIFKEM-KDLVEINASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVW 389

Query: 288 HVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL 347
            ++G +LV++Y K   +++A   F  + +KD  ++ +II+        E A+ CF  MR 
Sbjct: 390 ILIGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRR 449

Query: 348 EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
            G+  ++F++ S L+ C+ +  +  G+ +H   +K G  LD+ VS AL+ +YA+   +++
Sbjct: 450 NGMVPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEE 509

Query: 408 AEAVFKGSALRDTASWNMMIGGYVKHGLGE-KALEAFRMMLDEGYVPDEITFV 459
            + VF      D  SWN  IG          +A++ F  M+  G+ P+ +TF+
Sbjct: 510 YQKVFFLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFI 562



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 116/438 (26%), Positives = 218/438 (49%), Gaps = 18/438 (4%)

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           + +S  ++    +H    + G   D F   +LV+++ + G   +A K+F  +   ++V+W
Sbjct: 49  YRDSCTVEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSW 108

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ--RCGESIHAVI 178
             +++   Q G   EA  +F  +  + + PN + + S +RA  E G    + G  IH +I
Sbjct: 109 SCLVSGYAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLI 168

Query: 179 CKYGFESDTLVGNALVSMYME-NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
            K  + SD ++ N L+SMY   +  +    RVFE I  + S SWN++ S +         
Sbjct: 169 SKSPYASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISA 228

Query: 238 LRIFYQMLLKGF----KPNMCTFIVILKACSSLSDVGFG--KQLHAHTIKHSLDGNHVVG 291
            ++F  M  +      +PN  TF  ++    SL D G    +Q+ A   K S   +  VG
Sbjct: 229 FKLFSSMQREATELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEKSSFVKDLYVG 288

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
           ++LV  + + G ++ A + F+ + +++      ++   A+  + E A K F++M+ + ++
Sbjct: 289 SALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMK-DLVE 347

Query: 352 SNEFTLASCLNGCSPVATLANGRL----LHSIAVKTGHLLDMF--VSTALVAMYAKCGSI 405
            N  + A  L+  +  + L  G+     +H+  ++   L+D++  +  ALV +YAKC +I
Sbjct: 348 INASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNA-LVDVWILIGNALVNLYAKCNAI 406

Query: 406 DDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC 465
           D+A ++F+    +DT SWN +I G   +   E+A+  F  M   G VP + + +  LS+C
Sbjct: 407 DNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSC 466

Query: 466 SHMGLIEEGKK-HFSSIK 482
           + +G I  G++ H   IK
Sbjct: 467 ASLGWIMLGQQIHGEGIK 484


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/597 (34%), Positives = 339/597 (56%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF +M + + VS+N+L++G ++ G   K + LF  M     K    +++++L   ++
Sbjct: 325 AEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSS 384

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G +  G+  H+ AI+ G + D  L  +L+D+Y KC     A + F   +  +VV W  +
Sbjct: 385 VGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVM 444

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +          E+ KIF  M+   ++PNQF   S++R  +       GE IH  + K GF
Sbjct: 445 LVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGF 504

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           + +  V + L+ MY + G++ +  ++F  +  +D VSW A+ + +  +E   + L +F +
Sbjct: 505 QFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKE 564

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +G   +   F   + AC+ +  +  G+Q+HA         +  VG +LV +Y + G 
Sbjct: 565 MQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGK 624

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           + DA  AFD + +KD  ++ ++I+ +AQ+G  E AL  F +M   G + N FT    ++ 
Sbjct: 625 VRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSA 684

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
            + VA +  G+ +H++ +KTGH  +  VS  L+ +YAKCG+IDDAE  F     ++  SW
Sbjct: 685 AANVANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISW 744

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N M+ GY +HG G KAL  F  M   G +P+ +TFV VLSACSH+GL++EG K+F S+++
Sbjct: 745 NAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMRE 804

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
           ++G+ P  +H+AC++D+LGR+G  +    F+ E  + P+A+V   LL AC  H NI++ E
Sbjct: 805 VHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGE 864

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
             A  LLELEPK  + YV  S++ A  G+W      R ++  +G+KKEP  SWIEV+
Sbjct: 865 FAASHLLELEPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVN 921



 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 157/538 (29%), Positives = 273/538 (50%), Gaps = 3/538 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A  VF  MP   +  WN +L+ +       +V+ LF  M   + K  + + + VL+G   
Sbjct: 122 AVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGG 181

Query: 64  SGY-IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
                   + +HA  I  G     F+   L+D+Y K G  ++A KVF  ++  D V+W A
Sbjct: 182 GDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVA 241

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +++ L Q GC +EA  +F  M  S V P  ++ +S++ A T+    + GE +H ++ K G
Sbjct: 242 MLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQG 301

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F  +T V NALV++Y   G      +VF A+  +D VS+N+L S        D+ L +F 
Sbjct: 302 FSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFK 361

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M L   KP+  T   +L ACSS+  +  GKQ H++ IK  +  + ++  +L+D+Y K  
Sbjct: 362 KMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCS 421

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            ++ A   F S   +++  +  ++ +Y        + K F +M++EGI+ N+FT  S L 
Sbjct: 422 DIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILR 481

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            CS +  +  G  +H+  +KTG   +++VS+ L+ MYAK G +D A  +F+    +D  S
Sbjct: 482 TCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVS 541

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           W  MI GY +H    +AL  F+ M D+G   D I F   +SAC+ +  + +G++   +  
Sbjct: 542 WTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQ-IHAQA 600

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
            + G +  +     ++ +  R GK  +   F  +   + + + W +L+   +  G+ E
Sbjct: 601 CVSGYSDDLSVGNALVSLYARCGKVRD-AYFAFDKIFSKDNISWNSLISGFAQSGHCE 657



 Score =  255 bits (651), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 171/588 (29%), Positives = 295/588 (50%), Gaps = 17/588 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AK+VF  + + + VSW A+L+G ++SG  ++ + LFC M       + +  S+VL     
Sbjct: 224 AKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTK 283

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
             + K G+ +H + ++ G +L+ ++  +LV +YS+ G    A +VF  +   D V++ ++
Sbjct: 284 VEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSL 343

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+ L QQG   +A ++F  M    +KP+   + SL+ A +  G    G+  H+   K G 
Sbjct: 344 ISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGM 403

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            SD ++  AL+ +Y++   +      F +   ++ V WN +   +   ++ ++  +IF Q
Sbjct: 404 SSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQ 463

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M ++G +PN  T+  IL+ CSSL  V  G+Q+H   +K     N  V + L+DMY K G 
Sbjct: 464 MQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGK 523

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L+ A   F  L  KD+ ++TA+I  YAQ  +   AL  F++M+ +GI S+    AS ++ 
Sbjct: 524 LDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISA 583

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +  L  G+ +H+ A  +G+  D+ V  ALV++YA+CG + DA   F     +D  SW
Sbjct: 584 CAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISW 643

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I G+ + G  E+AL  F  M   G   +  TF   +SA +++  ++ GK+  + I K
Sbjct: 644 NSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIK 703

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
             G     +    +I +  + G   + E    E     N + W  +L   S HG+     
Sbjct: 704 T-GHDSETEVSNVLITLYAKCGNIDDAERQFFEMP-EKNEISWNAMLTGYSQHGH----- 756

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
               K L L   M+   V P+ ++        F GV +  S  G+  E
Sbjct: 757 --GFKALSLFEDMKQLGVLPNHVT--------FVGVLSACSHVGLVDE 794



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 156/598 (26%), Positives = 272/598 (45%), Gaps = 33/598 (5%)

Query: 8   FKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYI 67
           F+   E N     A  N   E+ +G   +HL   M++   + +  +   +L G  +SG+ 
Sbjct: 29  FQKFLEHNTALSYAYSNDEGEA-NGINFLHL---MEERGVRANSQTYLWLLDGCLSSGWF 84

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127
             G  +H   +++G   +  L   L+D+Y   G  D A+ VF  +    +  W  ++   
Sbjct: 85  SDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRF 144

Query: 128 DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ--RCGESIHAVICKYGFES 185
                      +F  M +  VKP++     ++R     GD    C E IHA    +G+E+
Sbjct: 145 VAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCG-GGDVPFHCVEKIHARTITHGYEN 203

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
              V N L+ +Y +NG ++   +VF+ +  +DSVSW A+ S        ++ + +F QM 
Sbjct: 204 SLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMH 263

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
             G  P    F  +L AC+ +     G+QLH   +K        V  +LV +Y + G   
Sbjct: 264 TSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFI 323

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
            A   F+++  +D  +Y ++I+  +Q G ++ AL+ F+KM L+ +K +  T+AS L+ CS
Sbjct: 324 PAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACS 383

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
            V  L  G+  HS A+K G   D+ +  AL+ +Y KC  I  A   F  +   +   WN+
Sbjct: 384 SVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNV 443

Query: 426 MIGGYVKHGLGEKALEAFRM---MLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           M+   V +GL +   E+F++   M  EG  P++ T+  +L  CS +  ++ G++  + + 
Sbjct: 444 ML---VAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVL 500

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           K  G    +   + +ID+  + GK           K   + + W  ++   + H      
Sbjct: 501 KT-GFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLK-EKDVVSWTAMIAGYAQH------ 552

Query: 543 EKDAEKL-----LELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCS 595
           EK AE L     ++ +     N  F S ISA        +G++AL   Q I  +   S
Sbjct: 553 EKFAEALNLFKEMQDQGIHSDNIGFASAISAC-------AGIQALNQGQQIHAQACVS 603



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 193/392 (49%), Gaps = 7/392 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A   F S    NVV WN +L  Y    +  +   +F  M+    + ++F+  ++L+ 
Sbjct: 423 IKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRT 482

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ++   +  G+ +H   ++ G   + ++S  L+DMY+K G  D+ALK+F R+K+ DVV+W
Sbjct: 483 CSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSW 542

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    Q     EA  +F  M++  +  +     S + A         G+ IHA  C 
Sbjct: 543 TAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACV 602

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G+  D  VGNALVS+Y   G+V      F+ I  +D++SWN+L S F      ++ L +
Sbjct: 603 SGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSL 662

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QM   G + N  TF   + A +++++V  GKQ+HA  IK   D    V   L+ +Y K
Sbjct: 663 FSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAK 722

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G ++DA   F  +  K+  ++ A++T Y+Q G    AL  F  M+  G+  N  T    
Sbjct: 723 CGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGV 782

Query: 361 LNGCSPVATLANG-------RLLHSIAVKTGH 385
           L+ CS V  +  G       R +H +  K  H
Sbjct: 783 LSACSHVGLVDEGIKYFQSMREVHGLVPKPEH 814


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/596 (32%), Positives = 335/596 (56%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF  M   + VS+N+L++G A+ G     + LF  MK    K    +++++L   A+
Sbjct: 267 AEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACAS 326

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +G +  G+ +H+  I+ G + D  +  +L+D+Y  C     A ++F   +  +VV W  +
Sbjct: 327 NGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVM 386

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    +     E+ +IF  M+   + PNQF   S++R  T  G    GE IH  + K GF
Sbjct: 387 LVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGF 446

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           + +  V + L+ MY ++G++     +   +   D VSW AL S +  +    + L+ F +
Sbjct: 447 QFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKE 506

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           ML +G + +   F   + AC+ +  +  G+Q+HA +       +  +G +LV +Y + G 
Sbjct: 507 MLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGR 566

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +++A + F+ +  KD  ++  +I+ +AQ+G  E ALK F +M    ++++ FT  S ++ 
Sbjct: 567 IKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSA 626

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
            + +A +  G+ +H++ +K G   D+ VS AL+  YAKCGSI+DA   F     ++  SW
Sbjct: 627 AANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSW 686

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N MI GY +HG G +A+  F  M   G +P+ +TFV VLSACSH+GL+ +G  +F S+ K
Sbjct: 687 NAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSK 746

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            +G+ P   H+AC++D++ RAG  +    FI E  + P+A +W  LL AC+ H N+E+ E
Sbjct: 747 EHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGE 806

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
             A+ LLELEP+  + YV  S++ A  G+W+     R ++ ++G+KKEP  SWIEV
Sbjct: 807 FAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEV 862



 Score =  269 bits (687), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 159/535 (29%), Positives = 278/535 (51%), Gaps = 4/535 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF ++   + VSW A+++G++++G  ++ +HLFC M       + +  S+VL G   
Sbjct: 166 ARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTK 225

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G+ +HA+  + G +L+ ++  +LV +YS+     +A KVF +++  D V++ ++
Sbjct: 226 IKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSL 285

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+ L QQG    A ++F  M+   +KP+   + SL+ A    G    GE +H+ + K G 
Sbjct: 286 ISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGI 345

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            SD +V  AL+ +Y+    +     +F     ++ V WN +   F   ++  +  RIF Q
Sbjct: 346 SSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQ 405

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M +KG  PN  T+  IL+ C+S+  +  G+Q+H   IK     N  V + L+DMY K G 
Sbjct: 406 MQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGK 465

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L+ A V   +L   D+ ++TA+I+ YAQ      ALK F++M   GI+S+    +S ++ 
Sbjct: 466 LDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISA 525

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +  L  GR +H+ +  +G+  D+ +  ALV++YA+CG I +A   F+    +D+ SW
Sbjct: 526 CAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISW 585

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK 482
           N +I G+ + G  E AL+ F  M          TF   +SA +++  I++GK+ H   IK
Sbjct: 586 NGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIK 645

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           +  G    I+    +I    + G   +      E     N + W  ++   S HG
Sbjct: 646 R--GFDSDIEVSNALITFYAKCGSIEDARREFCEMP-EKNDVSWNAMITGYSQHG 697



 Score =  248 bits (633), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 164/599 (27%), Positives = 300/599 (50%), Gaps = 18/599 (3%)

Query: 6   RVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSG 65
           +VF+ MP  +V SW+ +++G+ E     +V+ LF  M +     ++ S ++VL+  A SG
Sbjct: 66  KVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLR--ACSG 123

Query: 66  Y---IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           +   I+  + +HA  I  G      +S  L+ +Y+K GL  +A KVF  +   D V+W A
Sbjct: 124 HRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVA 183

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I+   Q G  +EA  +F  M  + + P  +V +S++   T+      GE +HA++ KYG
Sbjct: 184 MISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYG 243

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
              +T V NALV++Y          +VF  +  +D VS+N+L S        D  L +F 
Sbjct: 244 SSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFT 303

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M     KP+  T   +L AC+S   +  G+QLH++ IK  +  + +V  +L+D+Y    
Sbjct: 304 KMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCS 363

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            ++ A   F +   +++  +  ++ ++ +      + + FR+M+++G+  N+FT  S L 
Sbjct: 364 DIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILR 423

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+ V  L  G  +H+  +KTG   +++V + L+ MYAK G +D A  + +     D  S
Sbjct: 424 TCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVS 483

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           W  +I GY +H L  +AL+ F+ ML+ G   D I F   +SAC+ +  + +G++   +  
Sbjct: 484 WTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQ-IHAQS 542

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKL-TPNALVWENLLGACSWHGNIEL 541
            + G +  +     ++ +  R G+  E   ++   K+   +++ W  L+   +  G  E 
Sbjct: 543 YVSGYSEDLSIGNALVSLYARCGRIKEA--YLEFEKIDAKDSISWNGLISGFAQSGYCE- 599

Query: 542 DEKDAEKLLEL--EPKMESN-YVFPSDISATQGRWNDFSG--VRALLSSQGIKKEPSCS 595
              DA K+       K+E++ + F S +SA     N   G  + A++  +G   +   S
Sbjct: 600 ---DALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVS 655



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 137/510 (26%), Positives = 241/510 (47%), Gaps = 4/510 (0%)

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           NSG +   + +H   ++LG   +  L   LVD+Y   G  D  +KVF  + +  V +W  
Sbjct: 22  NSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDK 81

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATT-ETGDQRCGESIHAVICKY 181
           II+   ++        +F+ M E +V P +    S++RA +      R  E IHA I  +
Sbjct: 82  IISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIHARIICH 141

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G     ++ N L+ +Y +NG +    +VF+ +  +DSVSW A+ S F      ++ + +F
Sbjct: 142 GLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLF 201

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M   G  P    F  +L  C+ +     G+QLHA   K+       V  +LV +Y + 
Sbjct: 202 CEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRM 261

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
                A   F  + +KD  ++ ++I+  AQ G ++ AL+ F KM+ + +K +  T+AS L
Sbjct: 262 PNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLL 321

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           + C+    L  G  LHS  +K G   DM V  AL+ +Y  C  I  A  +F  +   +  
Sbjct: 322 SACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVV 381

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
            WN+M+  + K     ++   FR M  +G +P++ T+  +L  C+ +G ++ G++  + +
Sbjct: 382 LWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQV 441

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
            K  G    +   + +ID+  + GK  +  + I  T    + + W  L+   + H     
Sbjct: 442 IKT-GFQFNVYVCSVLIDMYAKHGKL-DTAHVILRTLTEDDVVSWTALISGYAQHNLFAE 499

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQG 571
             K  +++L    + + N  F S ISA  G
Sbjct: 500 ALKHFKEMLNRGIQSD-NIGFSSAISACAG 528



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 108/373 (28%), Positives = 179/373 (47%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  +F +    NVV WN +L  + +  +  +   +F  M+      ++F+  ++L+ 
Sbjct: 365 IKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRT 424

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             + G +  G+ +H   I+ G   + ++   L+DMY+K G  D A  +   + + DVV+W
Sbjct: 425 CTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSW 484

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I+   Q     EA K F  M    ++ +    +S + A         G  IHA    
Sbjct: 485 TALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYV 544

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G+  D  +GNALVS+Y   GR+      FE I  +DS+SWN L S F      +  L++
Sbjct: 545 SGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKV 604

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QM     + +  TF   + A ++++++  GKQ+HA  IK   D +  V  +L+  Y K
Sbjct: 605 FAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAK 664

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +EDA   F  +  K+  ++ A+IT Y+Q G    A+  F KM+  G   N  T    
Sbjct: 665 CGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGV 724

Query: 361 LNGCSPVATLANG 373
           L+ CS V  +  G
Sbjct: 725 LSACSHVGLVTKG 737



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 145/320 (45%), Gaps = 14/320 (4%)

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           +G   N  T+I +L  C +   +   K+LH   +K       V+   LVD+Y   G L+ 
Sbjct: 4   RGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDG 63

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
               F+ + N+ + ++  II+ + +   +   L  F  M  E +   E + AS L  CS 
Sbjct: 64  VVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSG 123

Query: 367 VAT-LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
               +     +H+  +  G L    +S  L+ +YAK G I  A  VF     +D+ SW  
Sbjct: 124 HRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVA 183

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIY 485
           MI G+ ++G  E+A+  F  M   G  P    F  VLS C+ + L + G++  + + K Y
Sbjct: 184 MISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFK-Y 242

Query: 486 GITPTIKHFAC--MIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
           G   +++ + C  ++ +  R   F   E   ++ + + + + + +L+   +  G      
Sbjct: 243 G--SSLETYVCNALVTLYSRMPNFVSAEKVFSKMQ-SKDEVSFNSLISGLAQQGF----- 294

Query: 544 KDAEKLLELEPKMESNYVFP 563
             ++  LEL  KM+ +Y+ P
Sbjct: 295 --SDGALELFTKMKRDYLKP 312



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 58/122 (47%)

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404
           M   GI +N  T    L+ C    +L   + LH   +K G   +  +   LV +Y   G 
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 405 IDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
           +D    VF+    R   SW+ +I G+++  +  + L+ F  M++E   P EI+F  VL A
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120

Query: 465 CS 466
           CS
Sbjct: 121 CS 122


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/608 (34%), Positives = 344/608 (56%), Gaps = 11/608 (1%)

Query: 2   ELAKRVFKSM--PELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKF---SKFSLST 56
           E A  +F++M   + ++VSW+A+++ +A +    + +  F  M    +     +++  + 
Sbjct: 91  ENALSIFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTA 150

Query: 57  VLKGFANSGYIKAGQVVHAMAIRLGCALDKFL--SCSLVDMYSKCGL-ADNALKVFYRIK 113
           +L+  +N  +   G  + A  ++ G   D  +   C+L+DM++K GL   +A  VF +++
Sbjct: 151 LLRSCSNPLFFTTGLAIFAFLLKTG-YFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQ 209

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES 173
             ++V W  +IT   Q G   +A  +F  +  S   P++F LTSL+ A  E      G+ 
Sbjct: 210 HKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQ 269

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           +H+ + + G  SD  VG  LV MY ++  V    ++F  + H + +SW AL S +     
Sbjct: 270 LHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQ 329

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
             + +++F  ML     PN  TF  +LKAC+SL D G GKQLH  TIK  L   + VG S
Sbjct: 330 EQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCVGNS 389

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           L++MY +SG +E A  AF+ L  K+L +Y     + A+A +++ +     ++   G+ ++
Sbjct: 390 LINMYARSGTMECARKAFNILFEKNLISYNTAADANAKALDSDESFN--HEVEHTGVGAS 447

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
            FT A  L+G + + T+  G  +H++ VK+G   ++ ++ AL++MY+KCG+ + A  VF 
Sbjct: 448 PFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFN 507

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
               R+  +W  +I G+ KHG   KALE F  ML+ G  P+E+T++ VLSACSH+GLI+E
Sbjct: 508 DMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDE 567

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
             KHF+S+   + I+P ++H+ACM+D+LGR+G   E   FI       +ALVW   LG+C
Sbjct: 568 AWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADALVWRTFLGSC 627

Query: 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPS 593
             H N +L E  A+K+LE EP   + Y+  S++ A++GRW+D + +R  +  + + KE  
Sbjct: 628 RVHRNTKLGEHAAKKILEREPHDPATYILLSNLYASEGRWDDVAALRKSMKQKKLIKETG 687

Query: 594 CSWIEVDG 601
            SWIEVD 
Sbjct: 688 YSWIEVDN 695



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 147/543 (27%), Positives = 260/543 (47%), Gaps = 31/543 (5%)

Query: 43  KDMEKKFSKFSLST---------VLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLV 93
           + + K  S+  L+T         +LK    SG ++ G+++H   I  G  LD  L  SL+
Sbjct: 22  ESLRKAISRLDLTTTSPLIKSSLLLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLI 81

Query: 94  DMYSKCGLADNALKVFYRI--KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESS---V 148
            +YSKCG  +NAL +F  +     D+V+W AII+C         A   F  M + S   +
Sbjct: 82  TLYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNII 141

Query: 149 KPNQFVLTSLVRATTETGDQRCGESIHAVICKYG-FESDTLVGNALVSMYMENGRVSYGS 207
            PN++  T+L+R+ +       G +I A + K G F+S   VG AL+ M+ + G     +
Sbjct: 142 YPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSA 201

Query: 208 R-VFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266
           R VF+ + H++ V+W  + +R+      D  + +F ++L+  + P+  T   +L AC  L
Sbjct: 202 RMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVEL 261

Query: 267 SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
                GKQLH+  I+  L  +  VG +LVDMY KS  +E++   F+++ + ++ ++TA+I
Sbjct: 262 EFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALI 321

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL 386
           + Y Q+ + + A+K F  M    +  N FT +S L  C+ +     G+ LH   +K G  
Sbjct: 322 SGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLS 381

Query: 387 LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM 446
               V  +L+ MYA+ G+++ A   F     ++  S+N       K      + E+F   
Sbjct: 382 TINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAK---ALDSDESFNHE 438

Query: 447 LDE-GYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRA 504
           ++  G      T+  +LS  + +G I +G++ H   +K  +G    I +   +I +  + 
Sbjct: 439 VEHTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINN--ALISMYSKC 496

Query: 505 GKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564
           G          +     N + W +++   + HG        A K LEL  +M    V P+
Sbjct: 497 GNKEAALQVFNDMGYR-NVITWTSIISGFAKHGF-------ATKALELFYEMLEIGVKPN 548

Query: 565 DIS 567
           +++
Sbjct: 549 EVT 551



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 104/370 (28%), Positives = 186/370 (50%), Gaps = 2/370 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+ VF  M   N+V+W  ++  Y++ G     + LFC +   E    KF+L+++L  
Sbjct: 198 IQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSA 257

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                +   G+ +H+  IR G A D F+ C+LVDMY+K    +N+ K+F  +   +V++W
Sbjct: 258 CVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSW 317

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I+   Q    QEA K+F  M    V PN F  +S+++A     D   G+ +H    K
Sbjct: 318 TALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIK 377

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G  +   VGN+L++MY  +G +    + F  +  ++ +S+N            D+    
Sbjct: 378 LGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAKALDSDESFN- 436

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
            +++   G   +  T+  +L   + +  +  G+Q+HA  +K     N  +  +L+ MY K
Sbjct: 437 -HEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSK 495

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G  E A   F+ +  +++  +T+II+ +A+ G A  AL+ F +M   G+K NE T  + 
Sbjct: 496 CGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAV 555

Query: 361 LNGCSPVATL 370
           L+ CS V  +
Sbjct: 556 LSACSHVGLI 565


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/596 (36%), Positives = 324/596 (54%), Gaps = 27/596 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           +KR+F  +PE NVVSWNAL + Y +     + + LF  M     K ++FSLS+++     
Sbjct: 211 SKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTG 270

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G+++H   I+LG   D F + +LVDMY+K G   +A+ VF +IK PD+V+W A+
Sbjct: 271 LRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAV 330

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I      GC      + +   E +++    +L  + R             +H+ + K   
Sbjct: 331 IA-----GC------VLHEHHEQALE----LLGQMKR------------QLHSSLMKMDM 363

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           ESD  V   LV MY +   +      F  +  +D ++WNA+ S +  Y    + L +F +
Sbjct: 364 ESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVE 423

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +G   N  T   ILK+ + L  V   +Q+H  ++K     +  V  SL+D Y K   
Sbjct: 424 MHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSH 483

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +EDA   F+     DL ++T++IT+YAQ G+ E ALK F +M+   +K + F  +S LN 
Sbjct: 484 VEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNA 543

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ ++    G+ LH   +K G +LD+F   +LV MYAKCGSIDDA   F     R   SW
Sbjct: 544 CANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSW 603

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           + MIGG  +HG G +AL+ F  ML EG  P+ IT V VL AC+H GL+ E K +F S+++
Sbjct: 604 SAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEE 663

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
           ++G  P  +H+ACMID+LGRAGK  E    + +     NA VW  LLGA   H ++EL  
Sbjct: 664 LFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGR 723

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           + AE L  LEP+    +V  ++I A+ G+W + + VR L+    +KKEP  SWIEV
Sbjct: 724 RAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEV 779



 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 179/565 (31%), Positives = 291/565 (51%), Gaps = 38/565 (6%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++     E ++VSW+AL++GYA++G G   +  F  M  +  K ++F+ S+VLK  + 
Sbjct: 110 ARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSI 169

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ G+ VH + +  G   D F++ +LV MY+KC    ++ ++F  I + +VV+W A+
Sbjct: 170 VKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNAL 229

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
            +C  Q   C EA  +F  M  S +KPN+F L+S+V A T   D   G+ IH  + K G+
Sbjct: 230 FSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGY 289

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           + D    NALV MY + G ++    VFE I   D VSWNA+ +    +E  +Q L +  Q
Sbjct: 290 DWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQ 349

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M                            +QLH+  +K  ++ +  V   LVDMY K   
Sbjct: 350 M---------------------------KRQLHSSLMKMDMESDLFVSVGLVDMYSKCDL 382

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           LEDA +AF+ L  KDL A+ AII+ Y+Q  E   AL  F +M  EGI  N+ TL++ L  
Sbjct: 383 LEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKS 442

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
            + +  +   R +H ++VK+G   D++V  +L+  Y KC  ++DAE +F+   + D  S+
Sbjct: 443 TAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSF 502

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
             MI  Y ++G GE+AL+ F  M D    PD      +L+AC+++   E+GK+    I K
Sbjct: 503 TSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILK 562

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV-WENLLGACSWHGNIELD 542
            YG    I     ++++  + G   +     +E  LT   +V W  ++G  + HG+    
Sbjct: 563 -YGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSE--LTERGIVSWSAMIGGLAQHGH---- 615

Query: 543 EKDAEKLLELEPKMESNYVFPSDIS 567
                + L+L  +M    V P+ I+
Sbjct: 616 ---GRQALQLFNQMLKEGVSPNHIT 637



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 136/468 (29%), Positives = 218/468 (46%), Gaps = 30/468 (6%)

Query: 50  SKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF 109
           +  S S +L     +  ++ G  +HA   + G + D  +   L+++YSKC     A K+ 
Sbjct: 55  TSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLV 114

Query: 110 YRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
               +PD+V+W A+I+   Q G    A   F+ M    VK N+F  +S+++A +   D R
Sbjct: 115 DESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLR 174

Query: 170 CGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
            G+ +H V+   GFE D  V N LV MY +        R+F+ I  ++ VSWNALFS + 
Sbjct: 175 IGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYV 234

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
             +   + + +FY+M+L G KPN  +   ++ AC+ L D   GK +H + IK   D +  
Sbjct: 235 QXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPF 294

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
              +LVDMY K G L DA   F+ +   D+ ++ A+I         E AL+   +M+   
Sbjct: 295 SANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMK--- 351

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
                                   R LHS  +K     D+FVS  LV MY+KC  ++DA 
Sbjct: 352 ------------------------RQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDAR 387

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
             F     +D  +WN +I GY ++    +AL  F  M  EG   ++ T   +L + + + 
Sbjct: 388 MAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQ 447

Query: 470 LIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE 516
           ++   ++ H  S+K   G    I     +ID  G+     + E    E
Sbjct: 448 VVHVCRQVHGLSVKS--GFHSDIYVVNSLIDSYGKCSHVEDAERIFEE 493



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 103/312 (33%), Positives = 158/312 (50%)

Query: 135 EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALV 194
           +   I NL+ + +  P     + L+     T   R G  IHA I K G   D  + N L+
Sbjct: 39  QTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLI 98

Query: 195 SMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMC 254
           ++Y +     Y  ++ +  +  D VSW+AL S +         L  F++M L G K N  
Sbjct: 99  NLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEF 158

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
           TF  +LKACS + D+  GKQ+H   +    +G+  V  +LV MY K     D+   FD +
Sbjct: 159 TFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEI 218

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
             +++ ++ A+ + Y Q      A+  F +M L GIK NEF+L+S +N C+ +   + G+
Sbjct: 219 PERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGK 278

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
           ++H   +K G+  D F + ALV MYAK G + DA +VF+     D  SWN +I G V H 
Sbjct: 279 IIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHE 338

Query: 435 LGEKALEAFRMM 446
             E+ALE    M
Sbjct: 339 HHEQALELLGQM 350



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 147/264 (55%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+  F  +PE ++++WNA+++GY++  +  + + LF  M      F++ +LST+LK 
Sbjct: 383 LEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKS 442

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    +   + VH ++++ G   D ++  SL+D Y KC   ++A ++F      D+V++
Sbjct: 443 TAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSF 502

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++IT   Q G  +EA K+F  M++  +KP++FV +SL+ A         G+ +H  I K
Sbjct: 503 TSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILK 562

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           YGF  D   GN+LV+MY + G +    R F  +  +  VSW+A+      +    Q L++
Sbjct: 563 YGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQL 622

Query: 241 FYQMLLKGFKPNMCTFIVILKACS 264
           F QML +G  PN  T + +L AC+
Sbjct: 623 FNQMLKEGVSPNHITLVSVLGACN 646



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 157/329 (47%), Gaps = 8/329 (2%)

Query: 233 SPDQGLRIFYQMLLKG-FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
           S D        ++ KG F P   ++  +L  C +   +  G Q+HAH  K  L  +  + 
Sbjct: 35  SEDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIR 94

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
             L+++Y K      A    D  +  DL +++A+I+ YAQ G    AL  F +M L G+K
Sbjct: 95  NHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVK 154

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            NEFT +S L  CS V  L  G+ +H + V +G   D+FV+  LV MYAKC    D++ +
Sbjct: 155 CNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRL 214

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F     R+  SWN +   YV+     +A+  F  M+  G  P+E +   +++AC+ +   
Sbjct: 215 FDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDS 274

Query: 472 EEGK-KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
             GK  H   IK  Y   P   +   ++D+  + G   +  +   + K  P+ + W  ++
Sbjct: 275 SRGKIIHGYLIKLGYDWDPFSAN--ALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVI 331

Query: 531 GACSWHGNIELDEKDAEKLLELEPKMESN 559
             C  H   E  E+  E L +++ ++ S+
Sbjct: 332 AGCVLH---EHHEQALELLGQMKRQLHSS 357



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 96/166 (57%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+R+F+     ++VS+ +++  YA+ G G++ + LF  M+DME K  +F  S++L  
Sbjct: 484 VEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNA 543

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            AN    + G+ +H   ++ G  LD F   SLV+MY+KCG  D+A + F  + +  +V+W
Sbjct: 544 CANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSW 603

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
            A+I  L Q G  ++A ++FN M +  V PN   L S++ A    G
Sbjct: 604 SAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAG 649


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/592 (34%), Positives = 337/592 (56%), Gaps = 6/592 (1%)

Query: 15  NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVH 74
           ++VSW+AL++ YA +    + +  F  M +     +++  + V +  +N   I  G+++ 
Sbjct: 6   DLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKIIF 65

Query: 75  AMAIRLGC-ALDKFLSCSLVDMYSK-CGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
              ++ G    D  + C+L+DM+ K  G  ++A KVF R+ D +VV W  +IT   Q G 
Sbjct: 66  GFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGF 125

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
            ++A  +F  M  S   P++F L+ +V A  E G    G   H ++ K G + D  VG +
Sbjct: 126 SRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCS 185

Query: 193 LVSMY---MENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD-QGLRIFYQMLLKG 248
           LV MY   + +G V    +VF+ +   + +SW A+ + +      D + + +F +M+   
Sbjct: 186 LVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQ 245

Query: 249 FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
            KPN  TF  +LKAC++LSD+  G+Q++A  +K  L   + VG SL+ MY + G +E+A 
Sbjct: 246 VKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENAR 305

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
            AFD L  K+L +Y  I+ +YA++  +E A + F ++   G   N FT AS L+G S + 
Sbjct: 306 KAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIG 365

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
            +  G  +HS  +K+G   ++ +  AL++MY++CG+I+ A  VF      +  SW  MI 
Sbjct: 366 AIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMIT 425

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGIT 488
           G+ KHG   +ALE F  ML+ G  P+E+T++ VLSACSH+GLI EG KHF S+K  +GI 
Sbjct: 426 GFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIV 485

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEK 548
           P ++H+AC++D+LGR+G   E    +       +ALV    LGAC  HGN++L +  AE 
Sbjct: 486 PRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEM 545

Query: 549 LLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           +LE +P   + Y+  S++ A+ G+W + + +R  +  + + KE  CSWIEV+
Sbjct: 546 ILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVE 597



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 137/469 (29%), Positives = 241/469 (51%), Gaps = 8/469 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A +VF  MP+ NVV+W  ++  + + G  +  + LF  M        +F+LS V+  
Sbjct: 95  LESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSA 154

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKC---GLADNALKVFYRIKDPDV 117
            A  G +  G+  H + ++ G  LD  + CSLVDMY+KC   G  D+A KVF R+   +V
Sbjct: 155 CAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNV 214

Query: 118 VAWGAIITCLDQQGCC-QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
           ++W AIIT   Q G C +EA ++F  M +  VKPN F  +S+++A     D   GE ++A
Sbjct: 215 MSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYA 274

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
           ++ K    S   VGN+L+SMY   G +    + F+ +  ++ VS+N + + +    + ++
Sbjct: 275 LVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEE 334

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
              +F ++   G   N  TF  +L   SS+  +G G+Q+H+  +K     N  +  +L+ 
Sbjct: 335 AFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALIS 394

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           MY + G +E A   F+ + + ++ ++T++IT +A+ G A  AL+ F KM   G+  NE T
Sbjct: 395 MYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVT 454

Query: 357 LASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
             + L+ CS V  ++ G +   S+ V+ G +  M     +V +  + G +++A  +    
Sbjct: 455 YIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSM 514

Query: 416 ALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
             + D       +G    HG  +    A  M+L++   P +    ++LS
Sbjct: 515 PFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQD--PHDPAAYILLS 561



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 92/275 (33%), Positives = 152/275 (55%), Gaps = 6/275 (2%)

Query: 216 QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL 275
           +D VSW+AL S + + E   + +  F+ ML  GF PN   F  + +ACS+  ++  GK +
Sbjct: 5   RDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKII 64

Query: 276 HAHTIKHS-LDGNHVVGTSLVDMYDK-SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
               +K    + +  VG +L+DM+ K +G LE A   FD + ++++  +T +IT + Q G
Sbjct: 65  FGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLG 124

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST 393
            +  A+  F  M L G   + FTL+  ++ C+ +  L+ GR  H + +K+G  LD+ V  
Sbjct: 125 FSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGC 184

Query: 394 ALVAMYAKC---GSIDDAEAVFKGSALRDTASWNMMIGGYVKH-GLGEKALEAFRMMLDE 449
           +LV MYAKC   GS+DDA  VF    + +  SW  +I GYV+  G   +A+E F  M+  
Sbjct: 185 SLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQG 244

Query: 450 GYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
              P+  TF  VL AC+++  I  G++ ++ + K+
Sbjct: 245 QVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKM 279


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/549 (36%), Positives = 307/549 (55%)

Query: 52  FSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYR 111
           F    VLK       + A + VH   I+     +  +  +L+ +Y +CG    A  VF  
Sbjct: 29  FMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFDA 88

Query: 112 IKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG 171
           +      +W A+I    +    ++A ++F  M    V+PN      +++A       + G
Sbjct: 89  LVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWG 148

Query: 172 ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY 231
           + +HA I   G ESD  VG AL+ MY + G ++   R+F+ + + D +SW  +   +   
Sbjct: 149 KEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQS 208

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
            +  +  R+  QM  +GFKPN  T++ IL AC+S   + + K++H H +   L+ +  VG
Sbjct: 209 GNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVG 268

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
           T+LV MY KSG ++DA V FD +  +D+ ++  +I ++A+ G    A   F +M+ EG K
Sbjct: 269 TALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCK 328

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            +     S LN C+    L   + +H  A+ +G  +D+ V TALV MY+K GSIDDA  V
Sbjct: 329 PDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVV 388

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F    +R+  SWN MI G  +HGLG+ ALE FR M   G  PD +TFV VLSACSH GL+
Sbjct: 389 FDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLV 448

Query: 472 EEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLG 531
           +EG+  + ++ ++YGI P + H  CM+D+LGRAG+  E + FI    + P+   W  LLG
Sbjct: 449 DEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLG 508

Query: 532 ACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
           +C  +GN+EL E  A++ L+L+PK  + YV  S+I A  G+W+  S VR ++  +GI+KE
Sbjct: 509 SCRTYGNVELGELVAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKE 568

Query: 592 PSCSWIEVD 600
           P  SWIEVD
Sbjct: 569 PGRSWIEVD 577



 Score =  238 bits (607), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 136/419 (32%), Positives = 228/419 (54%), Gaps = 13/419 (3%)

Query: 151 NQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF 210
           + F+   +++   +  D    + +H  I K   E +  V N L+ +Y+E GR+     VF
Sbjct: 27  DSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVF 86

Query: 211 EAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVG 270
           +A+  +   SWNA+ + + +++  +  +R+F +M  +G +PN  T+++ILKAC+SLS + 
Sbjct: 87  DALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALK 146

Query: 271 FGKQLHAHTIKHS-LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSY 329
           +GK++HA  I+H  L+ +  VGT+L+ MY K G + +A   FD+L N D+ ++T +I +Y
Sbjct: 147 WGKEVHA-CIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAY 205

Query: 330 AQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDM 389
           AQ+G  + A +   +M  EG K N  T  S LN C+    L   + +H  A+  G  LD+
Sbjct: 206 AQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDV 265

Query: 390 FVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDE 449
            V TALV MYAK GSIDDA  VF    +RD  SWN+MIG + +HG G +A + F  M  E
Sbjct: 266 RVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTE 325

Query: 450 GYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFT 508
           G  PD I F+ +L+AC+  G +E  KK H  ++    G+   ++    ++ +  ++G   
Sbjct: 326 GCKPDAIMFLSILNACASAGALEWVKKIHRHALDS--GLEVDVRVGTALVHMYSKSGSID 383

Query: 509 EIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           +        K+  N + W  ++   + HG         +  LE+  +M ++ V P  ++
Sbjct: 384 DARVVFDRMKVR-NVVSWNAMISGLAQHGL-------GQDALEVFRRMTAHGVKPDRVT 434



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 136/468 (29%), Positives = 232/468 (49%), Gaps = 10/468 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+ VF ++ + +  SWNA++ GY E    +  M LF  M     + +  +   +LK 
Sbjct: 79  LQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKA 138

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+   +K G+ VHA     G   D  +  +L+ MY KCG  + A ++F  + + D+++W
Sbjct: 139 CASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISW 198

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I    Q G  +EA ++   M +   KPN     S++ A    G  +  + +H     
Sbjct: 199 TVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALD 258

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G E D  VG ALV MY ++G +     VF+ +  +D VSWN +   F ++    +   +
Sbjct: 259 AGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDL 318

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QM  +G KP+   F+ IL AC+S   + + K++H H +   L+ +  VGT+LV MY K
Sbjct: 319 FLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSK 378

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
           SG ++DA V FD +  +++ ++ A+I+  AQ G  + AL+ FR+M   G+K +  T  + 
Sbjct: 379 SGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAV 438

Query: 361 LNGCSPVATLANGRLLHSIAVKT-GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR- 418
           L+ CS    +  GR  +    +  G   D+     +V +  + G + +A+      A+  
Sbjct: 439 LSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDP 498

Query: 419 DTASWNMMIGGYVKHG---LGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           D A+W  ++G    +G   LGE   +  R+ LD    P      V+LS
Sbjct: 499 DEATWGALLGSCRTYGNVELGELVAKE-RLKLD----PKNAATYVLLS 541



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 161/313 (51%), Gaps = 10/313 (3%)

Query: 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH 288
           Q   +  + + +    L +G   +   ++ +LK C    D+   KQ+H   IK  ++ N 
Sbjct: 4   QTANTLSEAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNA 63

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
            V  +L+ +Y + G L++A   FD+L  K   ++ A+I  Y +   AE A++ FR+M  E
Sbjct: 64  HVMNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHE 123

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
           G++ N  T    L  C+ ++ L  G+ +H+     G   D+ V TAL+ MY KCGSI++A
Sbjct: 124 GVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEA 183

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML---DEGYVPDEITFVVVLSAC 465
             +F      D  SW +MIG Y + G G+   EA+R+ML    EG+ P+ IT+V +L+AC
Sbjct: 184 RRIFDNLMNHDIISWTVMIGAYAQSGNGK---EAYRLMLQMEQEGFKPNAITYVSILNAC 240

Query: 466 SHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNAL 524
           +  G ++  K+ H  ++    G+   ++    ++ +  ++G   +        K+  + +
Sbjct: 241 ASEGALKWVKRVHRHALDA--GLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVR-DVV 297

Query: 525 VWENLLGACSWHG 537
            W  ++GA + HG
Sbjct: 298 SWNVMIGAFAEHG 310


>gi|222616424|gb|EEE52556.1| hypothetical protein OsJ_34807 [Oryza sativa Japonica Group]
          Length = 1215

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/599 (33%), Positives = 339/599 (56%), Gaps = 5/599 (0%)

Query: 4    AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
            A+++F  M E + +SWNA+++ Y+  G   K   +F  M+    +    +L +++   A+
Sbjct: 501  AEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCAS 560

Query: 64   SGYIKAGQVVHAMAIRLGCALDKFLSC--SLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
            S +   G  +H++ +R   +LD  ++   +LV+MYS  G   +A  +F+ +   D+++W 
Sbjct: 561  SDHFSHGSGIHSLCLR--SSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWN 618

Query: 122  AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
             +I+   Q     +A K    +  ++  PN    +S + A +  G    G+ +HA++ + 
Sbjct: 619  TMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQL 678

Query: 182  GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
              + + LVGN+L++MY +   +    +VF+++   D VS+N L   +   E   + +++F
Sbjct: 679  SLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVF 738

Query: 242  YQMLLKGFKPNMCTFIVILKACSSLSDV-GFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
              M   G KPN  T I I  + +S +D+  +G+ LHA+ I+     +  V  SL+ MY K
Sbjct: 739  SWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAK 798

Query: 301  SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
             G LE +   F+S+ NK++ ++ AII +  Q G  E ALK F  M+  G K +   LA C
Sbjct: 799  CGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLAEC 858

Query: 361  LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
            L+ C+ +A+L  G  LH + +K+G   D +V  A + MY KCG +D+   V    A+R  
Sbjct: 859  LSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQ 918

Query: 421  ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
              WN +I GY K+G  ++A E F+ M+  G  PD +TFV +LSACSH GL+++G  +++S
Sbjct: 919  QCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACSHAGLVDKGIDYYNS 978

Query: 481  IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
            +   +G++P IKH  C++D+LGR G+F E E FI E  + PN L+W +LL +   H N+E
Sbjct: 979  MASSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMPVLPNDLIWRSLLSSSRTHKNLE 1038

Query: 541  LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            +  K A+KLLEL+P  +S YV  S++ AT  RW D   +R+ + +  I K P+CSW+++
Sbjct: 1039 IGRKTAKKLLELDPFDDSAYVLLSNLYATNARWADVDKLRSHMKTININKRPACSWLKL 1097



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 120/458 (26%), Positives = 225/458 (49%), Gaps = 3/458 (0%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           +F  M +    +W   ++G    G   K   +   M++     S F+L++++      G 
Sbjct: 299 LFDEMADRTPSTWYTAVSGCVRCGSHGKAFEMLRGMREPGVPLSGFALASLVTACERRGR 358

Query: 67  ---IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              I  G  +HA+  R G   + ++  +L+ +Y   G+  +A ++F+ + + +VV+W A+
Sbjct: 359 DEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTAL 418

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +  L   G  +EA + +  MR   V  N     ++V       ++  G  + + +   G 
Sbjct: 419 MVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGL 478

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           ++   V N+L++M+   GRV    ++F+ +   D++SWNA+ S +       +   +F  
Sbjct: 479 QNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSD 538

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G +P+  T   ++  C+S      G  +H+  ++ SLD +  V  +LV+MY  +G 
Sbjct: 539 MRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGK 598

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L DA   F +++ +DL ++  +I+SY Q   +  ALK   ++       N  T +S L  
Sbjct: 599 LSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGA 658

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           CS    L +G+++H+I ++     ++ V  +L+ MY KC S++DAE VF+     D  S+
Sbjct: 659 CSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSY 718

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVV 461
           N++IGGY     G KA++ F  M   G  P+ IT + +
Sbjct: 719 NVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINI 756



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 118/409 (28%), Positives = 187/409 (45%), Gaps = 6/409 (1%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSK---CGLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
           +H +A+RL   L  F   +L+  Y +      A  AL +F  + D     W   ++   +
Sbjct: 261 IHGLAVRLALPLSAFHRNTLLAFYFRQRDASAAAAALHLFDEMADRTPSTWYTAVSGCVR 320

Query: 130 QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR---CGESIHAVICKYGFESD 186
            G   +A ++   MRE  V  + F L SLV A    G      CG +IHA+  + G   +
Sbjct: 321 CGSHGKAFEMLRGMREPGVPLSGFALASLVTACERRGRDEGIACGAAIHALTHRAGLMGN 380

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             +G AL+ +Y   G VS   R+F  +  ++ VSW AL          ++ LR + QM  
Sbjct: 381 VYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAYRQMRR 440

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
            G   N   F  ++  C SL +   G Q+ +  I   L     V  SL+ M+   G + D
Sbjct: 441 DGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVHD 500

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A   FD +   D  ++ A+I+ Y+  G        F  MR  G++ +  TL S ++ C+ 
Sbjct: 501 AEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCAS 560

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
               ++G  +HS+ +++     + V  ALV MY+  G + DAE +F   + RD  SWN M
Sbjct: 561 SDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTM 620

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           I  YV++     AL+    +      P+ +TF   L ACS  G + +GK
Sbjct: 621 ISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGK 669



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/265 (32%), Positives = 141/265 (53%), Gaps = 1/265 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A++VF+SMP  ++VS+N L+ GYA   DG K M +F  M+    K +  ++  +   
Sbjct: 700 MEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGS 759

Query: 61  FANSGYI-KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           FA+S  +   G+ +HA  IR G   D++++ SL+ MY+KCG  +++  +F  I + ++V+
Sbjct: 760 FASSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVS 819

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W AII    Q G  +EA K+F  M+ +  K ++  L   + +         G  +H +  
Sbjct: 820 WNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGM 879

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K G +SD+ V NA + MY + G++    +V    A +    WN L S +  Y    +   
Sbjct: 880 KSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEE 939

Query: 240 IFYQMLLKGFKPNMCTFIVILKACS 264
            F QM+  G KP+  TF+ +L ACS
Sbjct: 940 TFKQMVATGRKPDYVTFVALLSACS 964



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 79/166 (47%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E +  +F S+   N+VSWNA++    + G G++ + LF  M+    K  +  L+  L  
Sbjct: 802 LESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSS 861

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+   ++ G  +H + ++ G   D ++  + +DMY KCG  D  L+V           W
Sbjct: 862 CASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQQCW 921

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
             +I+   + G  +EA + F  M  +  KP+     +L+ A +  G
Sbjct: 922 NTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACSHAG 967



 Score = 45.8 bits (107), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 6/130 (4%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSK---CGLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
           +H +A+RL   L  F   +L+  Y +      A  AL +F  + D     W   ++   +
Sbjct: 38  IHGLAVRLALPLSAFHRNTLLAFYFRQRDASAAAAALHLFDEMADRTPSTWYTAVSGCVR 97

Query: 130 QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR---CGESIHAVICKYGFESD 186
            G    A ++   MRE  V  + F L SLV A    G      CG +IHA+  + G   +
Sbjct: 98  CGRDGTAFEMLRGMRERGVPLSGFALASLVTACERRGRDEGIACGAAIHALTHRAGLMGN 157

Query: 187 TLVGNALVSM 196
             +G AL+ +
Sbjct: 158 VYIGRALLHL 167


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/595 (33%), Positives = 335/595 (56%), Gaps = 2/595 (0%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           VF  M E +V SWN L+ GYA++G   + ++L+  M   E + + ++  +VLK  A    
Sbjct: 154 VFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSD 213

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           I  G+ +HA  IR G   D  +  +L+ MY KCG   NA  +F ++   D ++W A+I+ 
Sbjct: 214 IARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISG 273

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             + G   E  ++F++MRE SV P+   +T++  A     ++R G  +H  + K  F  D
Sbjct: 274 YFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGD 333

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             + N+L+ MY   GR+     VF  +  +D VSW A+ +    ++ P + +  +  M L
Sbjct: 334 ISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMEL 393

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           +G  P+  T + +L AC+ +  +  G +LH   IK  L  + +V  SL+DMY K  C+++
Sbjct: 394 EGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDN 453

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A   F +++ K++ ++T++I        +  AL  FR+M+ E +K N  TL S L+ C+ 
Sbjct: 454 ALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMK-ESMKPNSVTLISVLSACAR 512

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           +  L  G+ +H+ A++TG   D F+  A++ MY +CG    A   F  S  +D  +WN++
Sbjct: 513 IGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFN-SQKKDVTAWNIL 571

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           + GY + G  + A+E F  ML+    PDEITF+ +L ACS  G++ EG ++F+ +K  Y 
Sbjct: 572 LTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYN 631

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDA 546
           +TP +KH+AC++DILGRAG+  +  +FI +  + P+A +W  LL AC  H N+EL E  A
Sbjct: 632 LTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAA 691

Query: 547 EKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           +++ E + K    Y+   ++ A  G W+  S VR+L+  +G+  +P CSW+E+ G
Sbjct: 692 KRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKG 746



 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 145/480 (30%), Positives = 252/480 (52%), Gaps = 16/480 (3%)

Query: 76  MAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQE 135
           + +RLG AL        + M+ + G   +A  VF ++ + DV +W  ++    + GC  E
Sbjct: 130 LCVRLGNAL--------LSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDE 181

Query: 136 AAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVS 195
           A  +++ M  + ++PN +   S+++      D   G+ IHA + ++GFESD  VGNAL++
Sbjct: 182 ALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALIT 241

Query: 196 MYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCT 255
           MY++ G +S    +F+ +  +D +SWNA+ S + +     +GL +F  M      P++ T
Sbjct: 242 MYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLIT 301

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
              +  AC  L +   G+ +H + +K    G+  +  SL+ MY   G LE+A   F  + 
Sbjct: 302 MTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRME 361

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRL 375
           +KD+ ++TA+I S         A++ ++ M LEGI  +E TL S L+ C+ +  L  G  
Sbjct: 362 SKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIR 421

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           LH IA+KTG +  + VS +L+ MY+KC  +D+A  VF+  + ++  SW  +I G   +  
Sbjct: 422 LHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNR 481

Query: 436 GEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHF 494
             +AL  FR M  E   P+ +T + VLSAC+ +G +  GK+ H  +++   G    + + 
Sbjct: 482 SFEALLFFRQM-KESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPN- 539

Query: 495 ACMIDILGRAG-KFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELE 553
             ++D+  R G K   +  F ++ K   +   W  LL   +  G  +L  +  +K+LELE
Sbjct: 540 -AILDMYVRCGRKVPALNQFNSQKK---DVTAWNILLTGYAQQGQAKLAVELFDKMLELE 595



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 124/441 (28%), Positives = 216/441 (48%), Gaps = 7/441 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F  MP+ + +SWNA+++GY E+G G + + LF  M+++       +++TV      
Sbjct: 252 ARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACEL 311

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
               + G+ VH   ++     D  ++ SL+ MYS  G  + A  VF R++  DVV+W A+
Sbjct: 312 LDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAM 371

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I  L       +A + + +M    + P++  L S++ A    G    G  +H +  K G 
Sbjct: 372 IASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGL 431

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            S  +V N+L+ MY +   V     VF  I+ ++ VSW +L    +      + L +F++
Sbjct: 432 VSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEAL-LFFR 490

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
            + +  KPN  T I +L AC+ +  +  GK++HAH ++  +  +  +  +++DMY + G 
Sbjct: 491 QMKESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGR 550

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
              A   F+S   KD+ A+  ++T YAQ G+A++A++ F KM    I  +E T  S L  
Sbjct: 551 KVPALNQFNS-QKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCA 609

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTA-LVAMYAKCGSIDDAEAVFKGSALR-DTA 421
           CS    +  G    +I     +L       A +V +  + G +DDA    +   +R D A
Sbjct: 610 CSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAA 669

Query: 422 SWNMMIGGYVKHG---LGEKA 439
            W  ++     H    LGE A
Sbjct: 670 IWGALLNACRIHRNVELGEIA 690



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 149/309 (48%), Gaps = 5/309 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFS-KFSLSTVLK 59
           +E A+ VF  M   +VVSW A++          K +  +  M ++E     + +L +VL 
Sbjct: 350 LEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETY-KMMELEGILPDEITLVSVLS 408

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             A  G++  G  +H +AI+ G      +S SL+DMYSKC   DNAL+VF  I   +VV+
Sbjct: 409 ACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVS 468

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W ++I  L       EA   F  M+E S+KPN   L S++ A    G    G+ IHA   
Sbjct: 469 WTSLILGLRINNRSFEALLFFRQMKE-SMKPNSVTLISVLSACARIGALMRGKEIHAHAL 527

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           + G   D  + NA++ MY+  GR       F +   +D  +WN L + +         + 
Sbjct: 528 RTGVGFDGFLPNAILDMYVRCGRKVPALNQFNS-QKKDVTAWNILLTGYAQQGQAKLAVE 586

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ-LHAHTIKHSLDGNHVVGTSLVDMY 298
           +F +ML     P+  TFI +L ACS    V  G +  +    K++L  N      +VD+ 
Sbjct: 587 LFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDIL 646

Query: 299 DKSGCLEDA 307
            ++G L+DA
Sbjct: 647 GRAGQLDDA 655



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 68/144 (47%)

Query: 333 GEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS 392
           G  E A+K    M    I+  E    + L  C        G  ++ +   +   L + + 
Sbjct: 76  GNLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLG 135

Query: 393 TALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV 452
            AL++M+ + G++ DA  VF   + RD  SWN+++GGY K G  ++AL  +  ML     
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIR 195

Query: 453 PDEITFVVVLSACSHMGLIEEGKK 476
           P+  TF  VL  C+ +  I  GK+
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKE 219


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/595 (33%), Positives = 335/595 (56%), Gaps = 2/595 (0%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           VF  M E +V SWN L+ GYA++G   + ++L+  M   E + + ++  +VLK  A    
Sbjct: 154 VFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSD 213

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           I  G+ +HA  IR G   D  +  +L+ MY KCG   NA  +F ++   D ++W A+I+ 
Sbjct: 214 IARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISG 273

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             + G   E  ++F++MRE SV P+   +T++  A     ++R G  +H  + K  F  D
Sbjct: 274 YFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGD 333

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             + N+L+ MY   GR+     VF  +  +D VSW A+ +    ++ P + +  +  M L
Sbjct: 334 ISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMEL 393

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           +G  P+  T + +L AC+ +  +  G +LH   IK  L  + +V  SL+DMY K  C+++
Sbjct: 394 EGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDN 453

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A   F +++ K++ ++T++I        +  AL  FR+M+ E +K N  TL S L+ C+ 
Sbjct: 454 ALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMK-ESMKPNSVTLISVLSACAR 512

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           +  L  G+ +H+ A++TG   D F+  A++ MY +CG    A   F  S  +D  +WN++
Sbjct: 513 IGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFN-SQKKDVTAWNIL 571

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           + GY + G  + A+E F  ML+    PDEITF+ +L ACS  G++ EG ++F+ +K  Y 
Sbjct: 572 LTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYN 631

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDA 546
           +TP +KH+AC++DILGRAG+  +  +FI +  + P+A +W  LL AC  H N+EL E  A
Sbjct: 632 LTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAA 691

Query: 547 EKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           +++ E + K    Y+   ++ A  G W+  S VR+L+  +G+  +P CSW+E+ G
Sbjct: 692 KRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKG 746



 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 145/480 (30%), Positives = 252/480 (52%), Gaps = 16/480 (3%)

Query: 76  MAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQE 135
           + +RLG AL        + M+ + G   +A  VF ++ + DV +W  ++    + GC  E
Sbjct: 130 LCVRLGNAL--------LSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDE 181

Query: 136 AAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVS 195
           A  +++ M  + ++PN +   S+++      D   G+ IHA + ++GFESD  VGNAL++
Sbjct: 182 ALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALIT 241

Query: 196 MYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCT 255
           MY++ G +S    +F+ +  +D +SWNA+ S + +     +GL +F  M      P++ T
Sbjct: 242 MYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLIT 301

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
              +  AC  L +   G+ +H + +K    G+  +  SL+ MY   G LE+A   F  + 
Sbjct: 302 MTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRME 361

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRL 375
           +KD+ ++TA+I S         A++ ++ M LEGI  +E TL S L+ C+ +  L  G  
Sbjct: 362 SKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIR 421

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           LH IA+KTG +  + VS +L+ MY+KC  +D+A  VF+  + ++  SW  +I G   +  
Sbjct: 422 LHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNR 481

Query: 436 GEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHF 494
             +AL  FR M  E   P+ +T + VLSAC+ +G +  GK+ H  +++   G    + + 
Sbjct: 482 SFEALLFFRQM-KESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPN- 539

Query: 495 ACMIDILGRAG-KFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELE 553
             ++D+  R G K   +  F ++ K   +   W  LL   +  G  +L  +  +K+LELE
Sbjct: 540 -AILDMYVRCGRKVPALNQFNSQKK---DVTAWNILLTGYAQQGQAKLAVELFDKMLELE 595



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 124/441 (28%), Positives = 216/441 (48%), Gaps = 7/441 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F  MP+ + +SWNA+++GY E+G G + + LF  M+++       +++TV      
Sbjct: 252 ARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACEL 311

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
               + G+ VH   ++     D  ++ SL+ MYS  G  + A  VF R++  DVV+W A+
Sbjct: 312 LDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAM 371

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I  L       +A + + +M    + P++  L S++ A    G    G  +H +  K G 
Sbjct: 372 IASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGL 431

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            S  +V N+L+ MY +   V     VF  I+ ++ VSW +L    +      + L +F++
Sbjct: 432 VSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEAL-LFFR 490

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
            + +  KPN  T I +L AC+ +  +  GK++HAH ++  +  +  +  +++DMY + G 
Sbjct: 491 QMKESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGR 550

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
              A   F+S   KD+ A+  ++T YAQ G+A++A++ F KM    I  +E T  S L  
Sbjct: 551 KVPALNQFNS-QKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCA 609

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTA-LVAMYAKCGSIDDAEAVFKGSALR-DTA 421
           CS    +  G    +I     +L       A +V +  + G +DDA    +   +R D A
Sbjct: 610 CSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAA 669

Query: 422 SWNMMIGGYVKHG---LGEKA 439
            W  ++     H    LGE A
Sbjct: 670 IWGALLNACRIHRNVELGEIA 690



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 149/309 (48%), Gaps = 5/309 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFS-KFSLSTVLK 59
           +E A+ VF  M   +VVSW A++          K +  +  M ++E     + +L +VL 
Sbjct: 350 LEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETY-KMMELEGILPDEITLVSVLS 408

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             A  G++  G  +H +AI+ G      +S SL+DMYSKC   DNAL+VF  I   +VV+
Sbjct: 409 ACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVS 468

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W ++I  L       EA   F  M+E S+KPN   L S++ A    G    G+ IHA   
Sbjct: 469 WTSLILGLRINNRSFEALLFFRQMKE-SMKPNSVTLISVLSACARIGALMRGKEIHAHAL 527

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           + G   D  + NA++ MY+  GR       F +   +D  +WN L + +         + 
Sbjct: 528 RTGVGFDGFLPNAILDMYVRCGRKVPALNQFNS-QKKDVTAWNILLTGYAQQGQAKLAVE 586

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ-LHAHTIKHSLDGNHVVGTSLVDMY 298
           +F +ML     P+  TFI +L ACS    V  G +  +    K++L  N      +VD+ 
Sbjct: 587 LFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDIL 646

Query: 299 DKSGCLEDA 307
            ++G L+DA
Sbjct: 647 GRAGQLDDA 655



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 68/144 (47%)

Query: 333 GEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS 392
           G  E A+K    M    I+  E    + L  C        G  ++ +   +   L + + 
Sbjct: 76  GNLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLG 135

Query: 393 TALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV 452
            AL++M+ + G++ DA  VF   + RD  SWN+++GGY K G  ++AL  +  ML     
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIR 195

Query: 453 PDEITFVVVLSACSHMGLIEEGKK 476
           P+  TF  VL  C+ +  I  GK+
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKE 219


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/600 (33%), Positives = 334/600 (55%), Gaps = 1/600 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  VF  M E +++SWNA+++ YA  G  ++ +  F  M+ +  + +  +LS++L  
Sbjct: 348 VEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSV 407

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ++   +K G+ +H + ++LG   +  +  +L+ +YS+ G +++A  VF  + + D+++W
Sbjct: 408 CSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISW 467

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +++ C  Q G C +  KI   + +     N     S + A +        + +HA+I  
Sbjct: 468 NSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIV 527

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GF    +VGNALV+MY + G +    +V + +   D V+WNAL     + E P++ ++ 
Sbjct: 528 AGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKA 587

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDV-GFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +  +  KG   N  T + +L ACS+  D+   G  +HAH +    + +  V  SL+ MY 
Sbjct: 588 YKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYA 647

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G L  +   FD L NK    + A++ + A  G  E ALK F +MR  G+  ++F+ + 
Sbjct: 648 KCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSG 707

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L   + +A L  G+ LH + +K G   D+ V+ A + MY KCG + D   +      R 
Sbjct: 708 GLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRS 767

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SWN++I  + +HG  +KA E F  ML  G  PD +TFV +LSAC+H GL++EG  ++ 
Sbjct: 768 RLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYD 827

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           S+ + +G+ P I+H  C+ID+LGR+G+ +  E FI E  + PN L W +LL AC  HGN+
Sbjct: 828 SMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNL 887

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           EL  K AE LLEL+P  +S YV  S++ AT G+W D   +R  + S  IKK+P+CSW+++
Sbjct: 888 ELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKL 947



 Score =  221 bits (564), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 135/467 (28%), Positives = 237/467 (50%), Gaps = 1/467 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ VF  M   N  SW+ +L+GY   G  ++ + LFC M  +  + + F +++++  
Sbjct: 145 IEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITA 204

Query: 61  FANSGYI-KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
            + SGY+   G  VH   ++ G   D ++  +LV  Y   GL  NA K+F  + D +VV+
Sbjct: 205 CSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVS 264

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W +++      G   E   ++  MR+  V  NQ    ++  +     DQ  G  +   I 
Sbjct: 265 WTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHII 324

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           +YGFE    V N+L+SM+     V     VF+ +   D +SWNA+ S +  +    + LR
Sbjct: 325 QYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLR 384

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
            F+ M     + N  T   +L  CSS+ ++ +G+ +H   +K  LD N  +  +L+ +Y 
Sbjct: 385 CFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYS 444

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           ++G  EDA + F ++  +DL ++ +++  Y Q G+    LK   ++   G   N  T AS
Sbjct: 445 EAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFAS 504

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L  CS    L   +++H++ +  G    + V  ALV MY K G + +A+ V +     D
Sbjct: 505 ALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPD 564

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
             +WN +IGG+ ++    +A++A++++ ++G   + IT V VL ACS
Sbjct: 565 RVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACS 611



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 150/511 (29%), Positives = 255/511 (49%), Gaps = 17/511 (3%)

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
           LKGF+      AG+ +HA  I     L  F + +L++MYSK G  ++A  VF  ++  + 
Sbjct: 101 LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNE 160

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG---DQRCGESI 174
            +W  +++   + G  +EA  +F  M    V+PN F++ SL+ A + +G   D+  G  +
Sbjct: 161 ASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADE--GFQV 218

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H  + K G   D  VG ALV  Y   G V    ++FE +   + VSW +L   + D  +P
Sbjct: 219 HGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNP 278

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
            + L ++ +M  +G   N  TF  +  +C  L D   G Q+  H I++  + +  V  SL
Sbjct: 279 GEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSL 338

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           + M+     +E+A   FD +   D+ ++ A+I++YA  G    +L+CF  MR    ++N 
Sbjct: 339 ISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNS 398

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            TL+S L+ CS V  L  GR +H + VK G   ++ +   L+ +Y++ G  +DAE VF+ 
Sbjct: 399 TTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQA 458

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
              RD  SWN M+  YV+ G     L+    +L  G V + +TF   L+ACS+   + E 
Sbjct: 459 MTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIES 518

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
           K    ++  + G    +     ++ + G+ G   E +  + +T   P+ + W  L+G   
Sbjct: 519 KI-VHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKK-VLQTMPQPDRVTWNALIG--- 573

Query: 535 WHGNIELDEKD----AEKLLELEPKMESNYV 561
             G+ E +E +    A KL+  E  + +NY+
Sbjct: 574 --GHAENEEPNEAVKAYKLIR-EKGIPANYI 601


>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
 gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
          Length = 680

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/598 (36%), Positives = 328/598 (54%), Gaps = 5/598 (0%)

Query: 5   KRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKF--SKFSLSTVLKGFA 62
           KRVF  M E +VVSWN+++  ++  G   + +HLFC M ++   F  +  S+ +VL   A
Sbjct: 62  KRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEM-NLRSGFRPNMVSIVSVLPVCA 120

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
                  G+ +H   ++ G      +  +LVD+Y KCG   ++ +VF  I + + V+W A
Sbjct: 121 GLEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNA 180

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           IIT L      Q+A ++F LM +  VKPN    +S++    E      G+ IH    ++G
Sbjct: 181 IITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFG 240

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            ESD  V NAL+ MY ++GR    S VF  I  ++ VSWNA+ + F         + +  
Sbjct: 241 LESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVR 300

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           QM   G  PN  TF  +L AC+ +  +  GK++HA  I+     +  V  +L DMY K G
Sbjct: 301 QMQADGEIPNSVTFTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCG 360

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
           CL  A   F  ++ +D  +Y  +I  Y+Q      +L+ F +M ++G+K +  +    ++
Sbjct: 361 CLNLARRVF-KISLRDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVIS 419

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+ +A L  G+ +H +AV+      +F++ AL+  Y KCG ID A  VF+    RDTAS
Sbjct: 420 ACANLAALKQGKEVHGLAVRKHLHTHLFIANALLDFYIKCGRIDLAGKVFRQIPSRDTAS 479

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN MI GY   G    A+  F  M ++G   D ++++ VLSACSH GL+EEGKK+F  + 
Sbjct: 480 WNSMILGYGMLGELTIAINLFEAMKEDGVEYDSVSYIAVLSACSHGGLVEEGKKYFEHM- 538

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           ++  I PT  H+ACM+D+LGRAG   E    I    + P+A VW  LLGAC  HG IEL 
Sbjct: 539 QVQNIKPTQMHYACMVDLLGRAGLIEEAVKLIESLPIEPDANVWGALLGACRIHGYIELA 598

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
              AE L +L+P+    Y   S++ A  G+W++ + VR L+ S+G KK P CSW+++D
Sbjct: 599 HWAAEHLFKLKPQHSGYYSVLSNMYAEAGKWDEANQVRKLMKSRGAKKNPGCSWVQID 656



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 140/441 (31%), Positives = 234/441 (53%), Gaps = 3/441 (0%)

Query: 45  MEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADN 104
           M  +    +   VLK  A+S  ++ G+ +H +  +LG   D F+  +L+  Y  CG   +
Sbjct: 1   MGVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKD 60

Query: 105 ALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMR-ESSVKPNQFVLTSLVRATT 163
             +VF  + + DVV+W ++I      G   EA  +F  M   S  +PN   + S++    
Sbjct: 61  VKRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCA 120

Query: 164 ETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNA 223
              D   G  IH  + K G +S   VGNALV +Y + G V    RVF+ I+ ++ VSWNA
Sbjct: 121 GLEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNA 180

Query: 224 LFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS 283
           + +     E     L +F  M+  G KPN  TF  +L     L    FGK++H  +++  
Sbjct: 181 IITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFG 240

Query: 284 LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFR 343
           L+ +  V  +L+DMY KSG    A   F+ +  K++ ++ A++ ++AQ      A+   R
Sbjct: 241 LESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVR 300

Query: 344 KMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403
           +M+ +G   N  T  + L  C+ +  L  G+ +H+ A++TG  +D+FVS AL  MYAKCG
Sbjct: 301 QMQADGEIPNSVTFTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCG 360

Query: 404 SIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
            ++ A  VFK S LRD  S+N++I GY +     ++L  F  M  +G   D ++++ V+S
Sbjct: 361 CLNLARRVFKIS-LRDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVIS 419

Query: 464 ACSHMGLIEEGKK-HFSSIKK 483
           AC+++  +++GK+ H  +++K
Sbjct: 420 ACANLAALKQGKEVHGLAVRK 440



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 116/438 (26%), Positives = 217/438 (49%), Gaps = 4/438 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           ++RVF  + E N VSWNA++   A     Q  + +F  M D   K +  + S++L     
Sbjct: 163 SRRVFDEISERNGVSWNAIITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVE 222

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G+ +H  ++R G   D F++ +L+DMY+K G +  A  VF +I + ++V+W A+
Sbjct: 223 LKLFDFGKEIHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAM 282

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    Q      A  +   M+     PN    T+++ A    G  R G+ IHA   + G 
Sbjct: 283 VANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGFLRPGKEIHARAIRTGS 342

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D  V NAL  MY + G ++   RVF+ I+ +D VS+N L   +    +  + LR+F +
Sbjct: 343 SVDLFVSNALTDMYAKCGCLNLARRVFK-ISLRDEVSYNILIIGYSQTTNCSESLRLFLE 401

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M +KG K ++ +++ ++ AC++L+ +  GK++H   ++  L  +  +  +L+D Y K G 
Sbjct: 402 MGIKGMKLDVVSYMGVISACANLAALKQGKEVHGLAVRKHLHTHLFIANALLDFYIKCGR 461

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++ AG  F  + ++D  ++ ++I  Y   GE  +A+  F  M+ +G++ +  +  + L+ 
Sbjct: 462 IDLAGKVFRQIPSRDTASWNSMILGYGMLGELTIAINLFEAMKEDGVEYDSVSYIAVLSA 521

Query: 364 CSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DTA 421
           CS    +  G +    + V+      M  +  +V +  + G I++A  + +   +  D  
Sbjct: 522 CSHGGLVEEGKKYFEHMQVQNIKPTQMHYA-CMVDLLGRAGLIEEAVKLIESLPIEPDAN 580

Query: 422 SWNMMIGGYVKHGLGEKA 439
            W  ++G    HG  E A
Sbjct: 581 VWGALLGACRIHGYIELA 598



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 156/323 (48%), Gaps = 6/323 (1%)

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           G + +  TF  +LKAC+    V  G+++H    K   D +  VG +L+  Y   G L+D 
Sbjct: 2   GVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDV 61

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE-GIKSNEFTLASCLNGCSP 366
              FD +  +D+ ++ ++I  ++  G    A+  F +M L  G + N  ++ S L  C+ 
Sbjct: 62  KRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAG 121

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           +     GR +H   VKTG    + V  ALV +Y KCG + D+  VF   + R+  SWN +
Sbjct: 122 LEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAI 181

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIY 485
           I         + ALE FR+M+D G  P+ +TF  +L     + L + GK+ H  S++  +
Sbjct: 182 ITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLR--F 239

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKD 545
           G+   I     +ID+  ++G+  +  N   +     N + W N + A      +EL   D
Sbjct: 240 GLESDIFVANALIDMYAKSGRSLQASNVFNQIG-EKNIVSW-NAMVANFAQNRLELAAVD 297

Query: 546 AEKLLELEPKMESNYVFPSDISA 568
             + ++ + ++ ++  F + + A
Sbjct: 298 LVRQMQADGEIPNSVTFTNVLPA 320



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 67/126 (53%), Gaps = 3/126 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++LA +VF+ +P  +  SWN+++ GY   G+    ++LF +MK+   ++   S   VL  
Sbjct: 462 IDLAGKVFRQIPSRDTASWNSMILGYGMLGELTIAINLFEAMKEDGVEYDSVSYIAVLSA 521

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            ++ G ++ G +    M ++         +C +VD+  + GL + A+K+   +  +PD  
Sbjct: 522 CSHGGLVEEGKKYFEHMQVQNIKPTQMHYAC-MVDLLGRAGLIEEAVKLIESLPIEPDAN 580

Query: 119 AWGAII 124
            WGA++
Sbjct: 581 VWGALL 586


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/600 (33%), Positives = 334/600 (55%), Gaps = 1/600 (0%)

Query: 1    MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
            +E A  VF  M E +++SWNA+++ YA  G  ++ +  F  M+ +  + +  +LS++L  
Sbjct: 998  VEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSV 1057

Query: 61   FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             ++   +K G+ +H + ++LG   +  +  +L+ +YS+ G +++A  VF  + + D+++W
Sbjct: 1058 CSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISW 1117

Query: 121  GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +++ C  Q G C +  KI   + +     N     S + A +        + +HA+I  
Sbjct: 1118 NSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIV 1177

Query: 181  YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             GF    +VGNALV+MY + G +    +V + +   D V+WNAL     + E P++ ++ 
Sbjct: 1178 AGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKA 1237

Query: 241  FYQMLLKGFKPNMCTFIVILKACSSLSDV-GFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
            +  +  KG   N  T + +L ACS+  D+   G  +HAH +    + +  V  SL+ MY 
Sbjct: 1238 YKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYA 1297

Query: 300  KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
            K G L  +   FD L NK    + A++ + A  G  E ALK F +MR  G+  ++F+ + 
Sbjct: 1298 KCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSG 1357

Query: 360  CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
             L   + +A L  G+ LH + +K G   D+ V+ A + MY KCG + D   +      R 
Sbjct: 1358 GLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRS 1417

Query: 420  TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
              SWN++I  + +HG  +KA E F  ML  G  PD +TFV +LSAC+H GL++EG  ++ 
Sbjct: 1418 RLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYD 1477

Query: 480  SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
            S+ + +G+ P I+H  C+ID+LGR+G+ +  E FI E  + PN L W +LL AC  HGN+
Sbjct: 1478 SMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNL 1537

Query: 540  ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            EL  K AE LLEL+P  +S YV  S++ AT G+W D   +R  + S  IKK+P+CSW+++
Sbjct: 1538 ELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKL 1597



 Score =  278 bits (711), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 167/532 (31%), Positives = 267/532 (50%), Gaps = 1/532 (0%)

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127
           K G ++H   I  G   D  L+  L+  Y K G    A  VF  + +  VV+W A+++  
Sbjct: 47  KQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGY 106

Query: 128 DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDT 187
            Q G  ++A  +F+ MR   VK NQF   S +RA T       G  +   I K  F  + 
Sbjct: 107 SQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENL 166

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK 247
            V +ALV  + + G++   S +F  +  +D VSWNA+   +      D    +F  ML  
Sbjct: 167 FVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRG 226

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           G  P+  T   +L+A +    +    Q+H    +       +V   L++ Y K+G L  A
Sbjct: 227 GLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSA 286

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEM-ALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
                 +  KDLF+ TA+IT YA  G   + AL  F++M    I  ++  L S LN C+ 
Sbjct: 287 KDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICAN 346

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           +A+ A G  +H+ A+K     D+ +  AL+ MYAK G I+DA+  F     ++  SW  +
Sbjct: 347 LASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSL 406

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           I GY KHG G  A+  ++ M  +G+ P+++TF+ +L ACSH GL  EG + F+++   Y 
Sbjct: 407 ISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYN 466

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDA 546
           I P  +H++CM+D+  R G   E  N + +  +  NA +W  +LGA S +G + L ++ A
Sbjct: 467 IKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGASSIYGYMSLGKEAA 526

Query: 547 EKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
             L  ++P+   NYV  + I +  G W+D   +R L+  +  KK    S+ +
Sbjct: 527 SNLFNMQPENSVNYVVLASIYSAAGLWDDAWKIRKLMEERSTKKNAGYSFFQ 578



 Score =  221 bits (563), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 147/540 (27%), Positives = 265/540 (49%), Gaps = 6/540 (1%)

Query: 1    MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
            +E A+ VF  M   N  SW+ +L+GY   G  ++ + LFC M  +  + + F +++++  
Sbjct: 795  IEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITA 854

Query: 61   FANSGYI-KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             + SGY+   G  VH   ++ G   D ++  +LV  Y   GL  NA K+F  + D +VV+
Sbjct: 855  CSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVS 914

Query: 120  WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            W +++      G   E   ++  MR+  V  NQ    ++  +     DQ  G  +   I 
Sbjct: 915  WTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHII 974

Query: 180  KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
            +YGFE    V N+L+SM+     V     VF+ +   D +SWNA+ S +  +    + LR
Sbjct: 975  QYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLR 1034

Query: 240  IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
             F+ M     + N  T   +L  CSS+ ++ +G+ +H   +K  LD N  +  +L+ +Y 
Sbjct: 1035 CFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYS 1094

Query: 300  KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
            ++G  EDA + F ++  +DL ++ +++  Y Q G+    LK   ++   G   N  T AS
Sbjct: 1095 EAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFAS 1154

Query: 360  CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
             L  CS    L   +++H++ +  G    + V  ALV MY K G + +A+ V +     D
Sbjct: 1155 ALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPD 1214

Query: 420  TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM-GLIEEGKK-H 477
              +WN +IGG+ ++    +A++A++++ ++G   + IT V VL ACS    L++ G   H
Sbjct: 1215 RVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIH 1274

Query: 478  FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
               +   +     +K+   +I +  + G      N+I +     + + W  ++ A + HG
Sbjct: 1275 AHIVLTGFESDDYVKN--SLITMYAKCGDLNS-SNYIFDGLGNKSPITWNAMVAANAHHG 1331



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 150/511 (29%), Positives = 255/511 (49%), Gaps = 17/511 (3%)

Query: 58   LKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
            LKGF+      AG+ +HA  I     L  F + +L++MYSK G  ++A  VF  ++  + 
Sbjct: 751  LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNE 810

Query: 118  VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG---DQRCGESI 174
             +W  +++   + G  +EA  +F  M    V+PN F++ SL+ A + +G   D+  G  +
Sbjct: 811  ASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADE--GFQV 868

Query: 175  HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
            H  + K G   D  VG ALV  Y   G V    ++FE +   + VSW +L   + D  +P
Sbjct: 869  HGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNP 928

Query: 235  DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
             + L ++ +M  +G   N  TF  +  +C  L D   G Q+  H I++  + +  V  SL
Sbjct: 929  GEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSL 988

Query: 295  VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
            + M+     +E+A   FD +   D+ ++ A+I++YA  G    +L+CF  MR    ++N 
Sbjct: 989  ISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNS 1048

Query: 355  FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
             TL+S L+ CS V  L  GR +H + VK G   ++ +   L+ +Y++ G  +DAE VF+ 
Sbjct: 1049 TTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQA 1108

Query: 415  SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
               RD  SWN M+  YV+ G     L+    +L  G V + +TF   L+ACS+   + E 
Sbjct: 1109 MTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIES 1168

Query: 475  KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
            K    ++  + G    +     ++ + G+ G   E +  + +T   P+ + W  L+G   
Sbjct: 1169 KI-VHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKK-VLQTMPQPDRVTWNALIG--- 1223

Query: 535  WHGNIELDEKD----AEKLLELEPKMESNYV 561
              G+ E +E +    A KL+  E  + +NY+
Sbjct: 1224 --GHAENEEPNEAVKAYKLIR-EKGIPANYI 1251



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 133/480 (27%), Positives = 240/480 (50%), Gaps = 12/480 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF  MPE +VVSW A+++GY+++G  +K   LF  M+    K ++F+  + L+   +
Sbjct: 84  ARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTS 143

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G  V     +     + F+  +LVD +SKCG  ++A  +F  + + DVV+W A+
Sbjct: 144 LRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAM 203

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I     QG   ++  +F  M    + P+ + L S++RA+ E G       IH +I + G+
Sbjct: 204 IGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGY 263

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF--QDYESPDQGLRIF 241
            S  +V   L++ Y +NG +     + + +  +D  S  AL + +  +   S D  L +F
Sbjct: 264 GSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVD-ALDLF 322

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M       +      +L  C++L+    G Q+HA  +K+    +  +G +L+DMY KS
Sbjct: 323 KEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKS 382

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G +EDA  AFD +  K++ ++T++I+ YA+ G   MA+  ++KM  +G K N+ T  S L
Sbjct: 383 GEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLL 442

Query: 362 NGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
             CS     A G    +++  K          + +V ++A+ G +++A  +     ++  
Sbjct: 443 FACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHN 502

Query: 421 AS-WNMMIGGYVKHG---LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
           AS W  ++G    +G   LG++A      M  E    + + +VV+ S  S  GL ++  K
Sbjct: 503 ASLWGAILGASSIYGYMSLGKEAASNLFNMQPE----NSVNYVVLASIYSAAGLWDDAWK 558



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/433 (24%), Positives = 195/433 (45%), Gaps = 12/433 (2%)

Query: 137 AKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSM 196
           A+   L+  +  + +  +   +++   +   ++ G  IH  +   GF SD  +   L+  
Sbjct: 15  AEALKLLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIF 74

Query: 197 YMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTF 256
           Y++ G V     VF+ +  +  VSW A+ S +      ++   +F  M   G K N  T+
Sbjct: 75  YVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTY 134

Query: 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
              L+AC+SL  +  G Q+     K     N  V ++LVD + K G +EDA   F ++  
Sbjct: 135 GSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMME 194

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL 376
           +D+ ++ A+I  YA  G A+ +   FR M   G+  + +TL S L   +    L     +
Sbjct: 195 RDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQI 254

Query: 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL- 435
           H I  + G+     V+  L+  YAK GS+  A+ + KG   +D  S   +I GY   G+ 
Sbjct: 255 HGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIY 314

Query: 436 GEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHF 494
              AL+ F+ M       D++    +L+ C+++     G + H  ++K  Y  +  +   
Sbjct: 315 SVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALK--YQPSYDVAMG 372

Query: 495 ACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEP 554
             +ID+  ++G+  + +    E +   N + W +L+   + HG            + L  
Sbjct: 373 NALIDMYAKSGEIEDAKRAFDEME-EKNVISWTSLISGYAKHGY-------GHMAVSLYK 424

Query: 555 KMESNYVFPSDIS 567
           KMES    P+D++
Sbjct: 425 KMESKGFKPNDVT 437



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 149/309 (48%), Gaps = 2/309 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A  +F +M E +VVSWNA++ GYA  G       +F SM         ++L +VL+ 
Sbjct: 182 MEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRA 241

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A  G +     +H +  +LG      ++  L++ Y+K G   +A  +   +   D+ + 
Sbjct: 242 SAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSS 301

Query: 121 GAIITCLDQQGCCQ-EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            A+IT    +G    +A  +F  M + ++  +  +L S++           G  IHA   
Sbjct: 302 TALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFAL 361

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           KY    D  +GNAL+ MY ++G +    R F+ +  ++ +SW +L S +  +      + 
Sbjct: 362 KYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVS 421

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTI-KHSLDGNHVVGTSLVDMY 298
           ++ +M  KGFKPN  TF+ +L ACS       G +   + + K+++       + +VD++
Sbjct: 422 LYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLF 481

Query: 299 DKSGCLEDA 307
            + G LE+A
Sbjct: 482 ARQGLLEEA 490



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 16/171 (9%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E AKR F  M E NV+SW +L++GYA+ G G   + L+  M+    K +  +  ++L  
Sbjct: 385 IEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFA 444

Query: 61  FANSGYIKAG-----QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-D 114
            +++G    G      +V+   I+      +  SC +VD++++ GL + A  +  +I   
Sbjct: 445 CSHTGLTAEGCECFNNMVNKYNIK---PRAEHYSC-MVDLFARQGLLEEAYNLLCKIDIK 500

Query: 115 PDVVAWGAIITCLDQQGCC----QEAAKIFNLMRESSVKPNQFVLTSLVRA 161
            +   WGAI+      G      + A+ +FN+  E+SV  N  VL S+  A
Sbjct: 501 HNASLWGAILGASSIYGYMSLGKEAASNLFNMQPENSV--NYVVLASIYSA 549


>gi|77552605|gb|ABA95402.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 1000

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/599 (33%), Positives = 339/599 (56%), Gaps = 5/599 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F  M E + +SWNA+++ Y+  G   K   +F  M+    +    +L +++   A+
Sbjct: 199 AEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCAS 258

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSC--SLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           S +   G  +H++ +R   +LD  ++   +LV+MYS  G   +A  +F+ +   D+++W 
Sbjct: 259 SDHFSHGSGIHSLCLR--SSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWN 316

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            +I+   Q     +A K    +  ++  PN    +S + A +  G    G+ +HA++ + 
Sbjct: 317 TMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQL 376

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
             + + LVGN+L++MY +   +    +VF+++   D VS+N L   +   E   + +++F
Sbjct: 377 SLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVF 436

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDV-GFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
             M   G KPN  T I I  + +S +D+  +G+ LHA+ I+     +  V  SL+ MY K
Sbjct: 437 SWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAK 496

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G LE +   F+S+ NK++ ++ AII +  Q G  E ALK F  M+  G K +   LA C
Sbjct: 497 CGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLAEC 556

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L+ C+ +A+L  G  LH + +K+G   D +V  A + MY KCG +D+   V    A+R  
Sbjct: 557 LSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQ 616

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
             WN +I GY K+G  ++A E F+ M+  G  PD +TFV +LSACSH GL+++G  +++S
Sbjct: 617 QCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACSHAGLVDKGIDYYNS 676

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +   +G++P IKH  C++D+LGR G+F E E FI E  + PN L+W +LL +   H N+E
Sbjct: 677 MASSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMPVLPNDLIWRSLLSSSRTHKNLE 736

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +  K A+KLLEL+P  +S YV  S++ AT  RW D   +R+ + +  I K P+CSW+++
Sbjct: 737 IGRKTAKKLLELDPFDDSAYVLLSNLYATNARWADVDKLRSHMKTININKRPACSWLKL 795



 Score =  246 bits (628), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 158/549 (28%), Positives = 271/549 (49%), Gaps = 5/549 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R+F  MPE NVVSW AL+   + +G  ++ +  +  M+      +  + +TV+    +
Sbjct: 98  AQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGS 157

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G  V +  I  G      ++ SL+ M+   G   +A K+F R+++ D ++W A+
Sbjct: 158 LENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAM 217

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+    QG C +   +F+ MR   ++P+   L SL+     +     G  IH++  +   
Sbjct: 218 ISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSL 277

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           +S   V NALV+MY   G++S    +F  ++ +D +SWN + S +    +    L+   Q
Sbjct: 278 DSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQ 337

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           +      PN  TF   L ACSS   +  GK +HA  ++ SL  N +VG SL+ MY K   
Sbjct: 338 LFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNS 397

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +EDA   F S+   D+ +Y  +I  YA   +   A++ F  MR  GIK N  T+ +    
Sbjct: 398 MEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGS 457

Query: 364 CSPVATLAN-GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            +    L N GR LH+  ++TG L D +V+ +L+ MYAKCG+++ +  +F     ++  S
Sbjct: 458 FASSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVS 517

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSI 481
           WN +I   V+ G GE+AL+ F  M   G   D +     LS+C+ +  +EEG + H   +
Sbjct: 518 WNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGM 577

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
           K   G+          +D+ G+ GK  E+   + +  + P    W  L+   + +G  + 
Sbjct: 578 KS--GLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQQ-CWNTLISGYAKYGYFKE 634

Query: 542 DEKDAEKLL 550
            E+  ++++
Sbjct: 635 AEETFKQMV 643



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 118/454 (25%), Positives = 222/454 (48%), Gaps = 3/454 (0%)

Query: 11  MPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY---I 67
           M +    +W   ++G    G       +   M++     S F+L++++      G    I
Sbjct: 1   MADRTPSTWYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSGFALASLVTACERRGRDEGI 60

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127
             G  +HA+  R G   + ++  +L+ +Y   G+  +A ++F+ + + +VV+W A++  L
Sbjct: 61  ACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVAL 120

Query: 128 DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDT 187
              G  +EA + +  MR   V  N     ++V       ++  G  + + +   G ++  
Sbjct: 121 SSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQV 180

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK 247
            V N+L++M+   GRV    ++F+ +   D++SWNA+ S +       +   +F  M   
Sbjct: 181 SVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHH 240

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           G +P+  T   ++  C+S      G  +H+  ++ SLD +  V  +LV+MY  +G L DA
Sbjct: 241 GLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDA 300

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367
              F +++ +DL ++  +I+SY Q   +  ALK   ++       N  T +S L  CS  
Sbjct: 301 EFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSP 360

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
             L +G+++H+I ++     ++ V  +L+ MY KC S++DAE VF+     D  S+N++I
Sbjct: 361 GALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLI 420

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVV 461
           GGY     G KA++ F  M   G  P+ IT + +
Sbjct: 421 GGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINI 454



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 160/343 (46%), Gaps = 3/343 (0%)

Query: 136 AAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR---CGESIHAVICKYGFESDTLVGNA 192
           A ++   MRE  V  + F L SLV A    G      CG +IHA+  + G   +  +G A
Sbjct: 25  AFEMLRGMRERGVPLSGFALASLVTACERRGRDEGIACGAAIHALTHRAGLMGNVYIGTA 84

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           L+ +Y   G VS   R+F  +  ++ VSW AL          ++ LR + QM   G   N
Sbjct: 85  LLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAYRQMRRDGVPCN 144

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
              F  ++  C SL +   G Q+ +  I   L     V  SL+ M+   G + DA   FD
Sbjct: 145 ANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEKLFD 204

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
            +   D  ++ A+I+ Y+  G        F  MR  G++ +  TL S ++ C+     ++
Sbjct: 205 RMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSH 264

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
           G  +HS+ +++     + V  ALV MY+  G + DAE +F   + RD  SWN MI  YV+
Sbjct: 265 GSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQ 324

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           +     AL+    +      P+ +TF   L ACS  G + +GK
Sbjct: 325 NCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGK 367



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/265 (32%), Positives = 141/265 (53%), Gaps = 1/265 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A++VF+SMP  ++VS+N L+ GYA   DG K M +F  M+    K +  ++  +   
Sbjct: 398 MEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGS 457

Query: 61  FANSGYI-KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           FA+S  +   G+ +HA  IR G   D++++ SL+ MY+KCG  +++  +F  I + ++V+
Sbjct: 458 FASSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVS 517

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W AII    Q G  +EA K+F  M+ +  K ++  L   + +         G  +H +  
Sbjct: 518 WNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGM 577

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K G +SD+ V NA + MY + G++    +V    A +    WN L S +  Y    +   
Sbjct: 578 KSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEE 637

Query: 240 IFYQMLLKGFKPNMCTFIVILKACS 264
            F QM+  G KP+  TF+ +L ACS
Sbjct: 638 TFKQMVATGRKPDYVTFVALLSACS 662



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 79/166 (47%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E +  +F S+   N+VSWNA++    + G G++ + LF  M+    K  +  L+  L  
Sbjct: 500 LESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSS 559

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+   ++ G  +H + ++ G   D ++  + +DMY KCG  D  L+V           W
Sbjct: 560 CASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQQCW 619

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
             +I+   + G  +EA + F  M  +  KP+     +L+ A +  G
Sbjct: 620 NTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACSHAG 665


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/536 (37%), Positives = 305/536 (56%), Gaps = 1/536 (0%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           ++ G+ VHA  ++ G   +++L  +L+ MY+KCG   +A +VF  I+D ++V+W A+I  
Sbjct: 63  LEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEA 122

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
                   EA K +  M+ +  KP++    SL+ A T     + G+ +H  I + G E +
Sbjct: 123 FVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELE 182

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             VG +LV MY + G +S    +F+ +  ++ V+W  L + +      D  L +   M  
Sbjct: 183 PRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQ 242

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
               PN  TF  IL+ C++ + +  GK++H + I+        V  SL+ MY K G LE+
Sbjct: 243 AEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEE 302

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A   F  L ++D+  +TA++T YAQ G  + A+  FR+M+ +GIK ++ T  S L  CS 
Sbjct: 303 ARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSS 362

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
            A L  G+ +H   V  G+ LD+++ +ALV+MYAKCGS+DDA  VF   + R+  +W  +
Sbjct: 363 PAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAI 422

Query: 427 IGG-YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIY 485
           I G   +HG   +ALE F  M  +G  PD++TF  VLSAC+H+GL+EEG+KHF S+   Y
Sbjct: 423 ITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDY 482

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKD 545
           GI P ++H++C +D+LGRAG   E EN I      P   VW  LL AC  H ++E  E+ 
Sbjct: 483 GIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERA 542

Query: 546 AEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           AE +L+L+P  +  YV  S I A  GR+ D   VR ++  + + KEP  SWIEVDG
Sbjct: 543 AENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDG 598



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 125/448 (27%), Positives = 225/448 (50%), Gaps = 12/448 (2%)

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           ++ L + G  +EA  I N M     +    V   L++          G  +HA I K G 
Sbjct: 19  VSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 78

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           + +  + N L+SMY + G ++   RVF++I  ++ VSW A+   F       +  + +  
Sbjct: 79  QPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYET 138

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M L G KP+  TF+ +L A ++   +  G+++H   ++  L+    VGTSLV MY K G 
Sbjct: 139 MKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGD 198

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +  A V FD L  K++  +T +I  YAQ G+ ++AL+    M+   +  N+ T AS L G
Sbjct: 199 ISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQG 258

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+  A L +G+ +H   +++G+  +++V  +L+ MY KCG +++A  +F     RD  +W
Sbjct: 259 CTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTW 318

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK 482
             M+ GY + G  ++A+  FR M  +G  PD++TF  VL++CS    ++EGK+ H   + 
Sbjct: 319 TAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVH 378

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL-GACSWHGNIEL 541
             Y +   ++  + ++ +  + G   +  + +       N + W  ++ G C+ HG    
Sbjct: 379 AGYNLDVYLQ--SALVSMYAKCGSMDD-ASLVFNQMSERNVVAWTAIITGCCAQHGR--- 432

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISAT 569
                 + LE   +M+   + P  ++ T
Sbjct: 433 ----CREALEYFDQMKKQGIKPDKVTFT 456



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 132/467 (28%), Positives = 235/467 (50%), Gaps = 11/467 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+RVF S+ + N+VSW A++  +       +    + +MK    K  K +  ++L  F N
Sbjct: 101 ARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTN 160

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ GQ VH   +  G  L+  +  SLV MY+KCG    A  +F R+ + +VV W  +
Sbjct: 161 PELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLL 220

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    QQG    A ++   M+++ V PN+    S+++  T       G+ +H  I + G+
Sbjct: 221 IAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGY 280

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             +  V N+L++MY + G +    ++F  + H+D V+W A+ + +      D+ + +F +
Sbjct: 281 GRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRR 340

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +G KP+  TF  +L +CSS + +  GK++H   +    + +  + ++LV MY K G 
Sbjct: 341 MQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGS 400

Query: 304 LEDAGVAFDSLANKDLFAYTAIITS-YAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
           ++DA + F+ ++ +++ A+TAIIT   AQ G    AL+ F +M+ +GIK ++ T  S L+
Sbjct: 401 MDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLS 460

Query: 363 GCSPVATLANGRL-LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
            C+ V  +  GR    S+ +  G    +   +  V +  + G +++AE V          
Sbjct: 461 ACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGP 520

Query: 422 S-WNMMIGGYVKHG---LGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
           S W  ++     H     GE+A E   + LD    PD+    V LS+
Sbjct: 521 SVWGALLSACRVHSDVERGERAAENV-LKLD----PDDDGAYVALSS 562



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 127/242 (52%), Gaps = 3/242 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+++F  +P  +VV+W A++ GYA+ G   + ++LF  M+    K  K + ++VL  
Sbjct: 300 LEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTS 359

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ++  +++ G+ +H   +  G  LD +L  +LV MY+KCG  D+A  VF ++ + +VVAW
Sbjct: 360 CSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAW 419

Query: 121 GAIIT-CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES-IHAVI 178
            AIIT C  Q G C+EA + F+ M++  +KP++   TS++ A T  G    G     ++ 
Sbjct: 420 TAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMY 479

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS-WNALFSRFQDYESPDQG 237
             YG +      +  V +    G +     V  ++      S W AL S  + +   ++G
Sbjct: 480 LDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERG 539

Query: 238 LR 239
            R
Sbjct: 540 ER 541


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/597 (34%), Positives = 331/597 (55%), Gaps = 2/597 (0%)

Query: 4   AKRVFKSMPELN-VVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           A+++F  M   N VVSWN++++ Y+ +G   + + LF  M       + ++ +  L+   
Sbjct: 112 ARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACE 171

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           +S +IK G  +HA  ++ G  LD +++ +LV MY + G    A  +F  ++  D+V W +
Sbjct: 172 DSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNS 231

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           ++T   Q G   EA + F  ++ + +KP+Q  + S++ A+   G    G+ IHA   K G
Sbjct: 232 MLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNG 291

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F+S+ LVGN L+ MY +   +SYG R F+ +AH+D +SW    + +   +   Q L +  
Sbjct: 292 FDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLR 351

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           Q+ ++G   +      IL AC  L+ +G  K++H +TI+  L  + V+  +++D+Y + G
Sbjct: 352 QLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLS-DPVLQNTIIDVYGECG 410

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            ++ A   F+S+  KD+ ++T++I+ Y   G A  AL+ F  M+  G++ +  TL S L+
Sbjct: 411 IIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILS 470

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
               ++TL  G+ +H   ++ G +L+  +S  LV MYA+CGS++DA  +F  +  R+   
Sbjct: 471 AVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLIL 530

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           W  MI  Y  HG GE A+E F  M DE  +PD ITF+ +L ACSH GL+ EGK     +K
Sbjct: 531 WTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIMK 590

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
             Y + P  +H+ C++D+LGR     E    +   +  P   VW  LLGAC  H N E+ 
Sbjct: 591 CEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACRIHSNKEIG 650

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           E  AEKLLEL+     NYV  S++ A  GRW D   VR  +   G+ K P CSWIEV
Sbjct: 651 EVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKNPGCSWIEV 707



 Score =  285 bits (728), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 171/566 (30%), Positives = 290/566 (51%), Gaps = 13/566 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F  M E ++ +WNA++ GY  +G+    + ++  M+ +   F  ++   +LK    
Sbjct: 11  AEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLLKACGI 70

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVVAWGA 122
              +  G  +H +AI+ GC    F+  SLV +Y+KC   + A K+F R+    DVV+W +
Sbjct: 71  VEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNS 130

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           II+     G C EA  +F+ M ++ V  N +   + ++A  ++   + G  IHA I K G
Sbjct: 131 IISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSG 190

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
              D  V NALV+MY+  G++   + +F  +  +D V+WN++ + F       + L  FY
Sbjct: 191 RVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFY 250

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            +     KP+  + I I+ A   L  +  GK++HA+ IK+  D N +VG +L+DMY K  
Sbjct: 251 DLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCC 310

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
           C+   G AFD +A+KDL ++T     YAQ      AL+  R++++EG+  +   + S L 
Sbjct: 311 CMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILL 370

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C  +  L   + +H   ++ G L D  +   ++ +Y +CG ID A  +F+    +D  S
Sbjct: 371 ACRGLNCLGKIKEIHGYTIRGG-LSDPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVS 429

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSI 481
           W  MI  YV +GL  KALE F  M + G  PD +T V +LSA   +  +++GK+ H   I
Sbjct: 430 WTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFII 489

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
           +K + +  +I +   ++D+  R G   +     T TK   N ++W  ++ A   HG    
Sbjct: 490 RKGFILEGSISN--TLVDMYARCGSVEDAYKIFTCTK-NRNLILWTAMISAYGMHGY--- 543

Query: 542 DEKDAEKLLELEPKMESNYVFPSDIS 567
                E  +EL  +M+   + P  I+
Sbjct: 544 ----GEAAVELFMRMKDEKIIPDHIT 565



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 129/480 (26%), Positives = 221/480 (46%), Gaps = 30/480 (6%)

Query: 95  MYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFV 154
           MY KCG   +A  +F ++ +  +  W A++      G    A +++  MR   V  + + 
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 155 LTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAI- 213
              L++A     D  CG  IH +  KYG +S   V N+LV++Y +   ++   ++F+ + 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 214 AHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGK 273
              D VSWN++ S +       + L +F +ML  G   N  TF   L+AC   S +  G 
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
           Q+HA  +K     +  V  +LV MY + G + +A V F +L  KD+  + +++T + Q G
Sbjct: 181 QIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNG 240

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST 393
               AL+ F  ++   +K ++ ++ S +     +  L NG+ +H+ A+K G   ++ V  
Sbjct: 241 LYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGN 300

Query: 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP 453
            L+ MYAKC  +      F   A +D  SW     GY ++    +ALE  R +  EG   
Sbjct: 301 TLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDV 360

Query: 454 DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGIT-------PTIKHFACMIDILGRAGK 506
           D      +L AC        G      IK+I+G T       P +++   +ID+ G  G 
Sbjct: 361 DATMIGSILLAC-------RGLNCLGKIKEIHGYTIRGGLSDPVLQN--TIIDVYGECG- 410

Query: 507 FTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLEL-----EPKMESNYV 561
             +    I E+    + + W +++ +C  H  +      A K LE+     E  +E +YV
Sbjct: 411 IIDYAVRIFESIECKDVVSWTSMI-SCYVHNGL------ANKALEVFSSMKETGLEPDYV 463



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/447 (25%), Positives = 215/447 (48%), Gaps = 8/447 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A  +F ++   ++V+WN++L G+ ++G   + +  F  +++ + K  + S+ +++  
Sbjct: 211 MPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVA 270

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
               GY+  G+ +HA AI+ G   +  +  +L+DMY+KC       + F  +   D+++W
Sbjct: 271 SGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISW 330

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
                   Q  C  +A ++   ++   +  +  ++ S++ A          + IH    +
Sbjct: 331 TTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIR 390

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G  SD ++ N ++ +Y E G + Y  R+FE+I  +D VSW ++ S +      ++ L +
Sbjct: 391 GGL-SDPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEV 449

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  M   G +P+  T + IL A  SLS +  GK++H   I+        +  +LVDMY +
Sbjct: 450 FSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYAR 509

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +EDA   F    N++L  +TA+I++Y   G  E A++ F +M+ E I  +  T  + 
Sbjct: 510 CGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLAL 569

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVS--TALVAMYAKCGSIDDAEAVFKGSALR 418
           L  CS    +  G+    I +K  + L+ +    T LV +  +   +++A  + K     
Sbjct: 570 LYACSHSGLVNEGKSFLEI-MKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNE 628

Query: 419 DTAS-WNMMIGGYVKHG---LGEKALE 441
            T   W  ++G    H    +GE A E
Sbjct: 629 PTPEVWCALLGACRIHSNKEIGEVAAE 655


>gi|15232006|ref|NP_187516.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207468|sp|Q9SS83.1|PP220_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g09040, mitochondrial; Flags: Precursor
 gi|5923669|gb|AAD56320.1|AC009326_7 hypothetical protein [Arabidopsis thaliana]
 gi|332641192|gb|AEE74713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1028

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/603 (35%), Positives = 330/603 (54%), Gaps = 4/603 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A +VF+++ E N V WNA++ GYA +G+  KVM LF  MK        F+ +++L  
Sbjct: 378 MEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLST 437

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A S  ++ G   H++ I+   A + F+  +LVDMY+KCG  ++A ++F R+ D D V W
Sbjct: 438 CAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTW 497

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             II    Q     EA  +F  M    +  +   L S ++A T       G+ +H +  K
Sbjct: 498 NTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVK 557

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G + D   G++L+ MY + G +    +VF ++     VS NAL + +    + ++ + +
Sbjct: 558 CGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQ-NNLEEAVVL 616

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGN-HVVGTSLVDMYD 299
           F +ML +G  P+  TF  I++AC     +  G Q H    K         +G SL+ MY 
Sbjct: 617 FQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYM 676

Query: 300 KSGCLEDAGVAFDSLAN-KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            S  + +A   F  L++ K +  +T +++ ++Q G  E ALK +++MR +G+  ++ T  
Sbjct: 677 NSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFV 736

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           + L  CS +++L  GR +HS+     H LD   S  L+ MYAKCG +  +  VF     R
Sbjct: 737 TVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRR 796

Query: 419 -DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
            +  SWN +I GY K+G  E AL+ F  M     +PDEITF+ VL+ACSH G + +G+K 
Sbjct: 797 SNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKI 856

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F  +   YGI   + H ACM+D+LGR G   E ++FI    L P+A +W +LLGAC  HG
Sbjct: 857 FEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHG 916

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           +    E  AEKL+ELEP+  S YV  S+I A+QG W   + +R ++  +G+KK P  SWI
Sbjct: 917 DDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMRDRGVKKVPGYSWI 976

Query: 598 EVD 600
           +V+
Sbjct: 977 DVE 979



 Score =  249 bits (635), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 159/568 (27%), Positives = 277/568 (48%), Gaps = 15/568 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F  M   +VV+WN +++G+ + G     +  F +M+    K ++ +L +VL     
Sbjct: 280 ARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGI 339

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G VVHA AI+LG A + ++  SLV MYSKC   + A KVF  +++ + V W A+
Sbjct: 340 VANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAM 399

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I      G   +  ++F  M+ S    + F  TSL+     + D   G   H++I K   
Sbjct: 400 IRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKL 459

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             +  VGNALV MY + G +    ++FE +  +D+V+WN +   +   E+  +   +F +
Sbjct: 460 AKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKR 519

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M L G   +       LKAC+ +  +  GKQ+H  ++K  LD +   G+SL+DMY K G 
Sbjct: 520 MNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGI 579

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++DA   F SL    + +  A+I  Y+Q    E A+  F++M   G+  +E T A+ +  
Sbjct: 580 IKDARKVFSSLPEWSVVSMNALIAGYSQ-NNLEEAVVLFQEMLTRGVNPSEITFATIVEA 638

Query: 364 CSPVATLANGRLLHSIAVKTGHLLD-MFVSTALVAMYAKCGSIDDAEAVFKG-SALRDTA 421
           C    +L  G   H    K G   +  ++  +L+ MY     + +A A+F   S+ +   
Sbjct: 639 CHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIV 698

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
            W  M+ G+ ++G  E+AL+ ++ M  +G +PD+ TFV VL  CS +  + EG+   S  
Sbjct: 699 LWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHS-- 756

Query: 482 KKIYGITPTIKHFA--CMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
             I+ +   +       +ID+  + G          E +   N + W +L+   + +G  
Sbjct: 757 -LIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGY- 814

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDIS 567
                 AE  L++   M  +++ P +I+
Sbjct: 815 ------AEDALKIFDSMRQSHIMPDEIT 836



 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 179/620 (28%), Positives = 284/620 (45%), Gaps = 80/620 (12%)

Query: 13  ELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQV 72
           E +V +WN++L+ Y+  G   KV+  F S+ + +   +KF+ S VL   A    ++ G+ 
Sbjct: 122 EKDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQ 181

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKC-------------------------------GL 101
           +H   I++G   + +   +LVDMY+KC                               GL
Sbjct: 182 IHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGL 241

Query: 102 ADNALKVFYRIKD-----------------------------------PDVVAWGAIITC 126
            + A+ VF R++D                                   PDVVAW  +I+ 
Sbjct: 242 PEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISG 301

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             ++GC   A + F  MR+SSVK  +  L S++ A     +   G  +HA   K G  S+
Sbjct: 302 HGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASN 361

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             VG++LVSMY +  ++   ++VFEA+  ++ V WNA+   +       + + +F  M  
Sbjct: 362 IYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKS 421

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
            G+  +  TF  +L  C++  D+  G Q H+  IK  L  N  VG +LVDMY K G LED
Sbjct: 422 SGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALED 481

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A   F+ + ++D   +  II SY Q      A   F++M L GI S+   LAS L  C+ 
Sbjct: 482 ARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTH 541

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           V  L  G+ +H ++VK G   D+   ++L+ MY+KCG I DA  VF         S N +
Sbjct: 542 VHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNAL 601

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           I GY ++ L E+A+  F+ ML  G  P EITF  ++ AC     +  G +    I K  G
Sbjct: 602 IAGYSQNNL-EEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITK-RG 659

Query: 487 ITPTIKHFACMIDILG---RAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            +   ++    I +LG    +   TE     +E     + ++W  ++   S +G      
Sbjct: 660 FSSEGEYLG--ISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFY---- 713

Query: 544 KDAEKLLELEPKMESNYVFP 563
              E+ L+   +M  + V P
Sbjct: 714 ---EEALKFYKEMRHDGVLP 730



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 122/466 (26%), Positives = 220/466 (47%), Gaps = 38/466 (8%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           ++ G+ VH+ ++ LG   +  L  ++VD+Y+KC     A K F    + DV AW ++++ 
Sbjct: 76  LRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQF-DFLEKDVTAWNSMLSM 134

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
               G   +  + F  + E+ + PN+F  + ++       +   G  IH  + K G E +
Sbjct: 135 YSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERN 194

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
           +  G ALV MY +  R+S   RVFE I   ++V W  LFS +     P++ + +F +M  
Sbjct: 195 SYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRD 254

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           +G +P+   F+ +                                   ++ Y + G L+D
Sbjct: 255 EGHRPDHLAFVTV-----------------------------------INTYIRLGKLKD 279

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A + F  +++ D+ A+  +I+ + + G   +A++ F  MR   +KS   TL S L+    
Sbjct: 280 ARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGI 339

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           VA L  G ++H+ A+K G   +++V ++LV+MY+KC  ++ A  VF+    ++   WN M
Sbjct: 340 VANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAM 399

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           I GY  +G   K +E F  M   GY  D+ TF  +LS C+    +E G + F SI     
Sbjct: 400 IRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQ-FHSIIIKKK 458

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
           +   +     ++D+  + G   +    I E     + + W  ++G+
Sbjct: 459 LAKNLFVGNALVDMYAKCGALEDARQ-IFERMCDRDNVTWNTIIGS 503



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/392 (25%), Positives = 173/392 (44%), Gaps = 47/392 (11%)

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228
           R G+++H+     G +S+  +GNA+V +Y +  +VSY  + F+ +  +D  +WN++ S +
Sbjct: 77  RIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFL-EKDVTAWNSMLSMY 135

Query: 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH 288
                P + LR F  +      PN  TF ++L  C+  ++V FG+Q+H   IK  L+ N 
Sbjct: 136 SSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNS 195

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
             G +LVDMY K   + DA   F+ + + +   +T + + Y +AG  E A+  F +MR E
Sbjct: 196 YCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDE 255

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
           G + +     + +N                                    Y + G + DA
Sbjct: 256 GHRPDHLAFVTVIN-----------------------------------TYIRLGKLKDA 280

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
             +F   +  D  +WN+MI G+ K G    A+E F  M          T   VLSA   +
Sbjct: 281 RLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIV 340

Query: 469 GLIEEG-KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWE 527
             ++ G   H  +IK   G+   I   + ++ +  +  K  E    + E     N + W 
Sbjct: 341 ANLDLGLVVHAEAIK--LGLASNIYVGSSLVSMYSKCEKM-EAAAKVFEALEEKNDVFWN 397

Query: 528 NLLGACSWHGNIELDEKDAEKLLELEPKMESN 559
            ++   + +G       ++ K++EL   M+S+
Sbjct: 398 AMIRGYAHNG-------ESHKVMELFMDMKSS 422



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 142/309 (45%), Gaps = 22/309 (7%)

Query: 225 FSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSD--------------VG 270
           F R   Y SPD G RI+  +L    + +     + L  C                   + 
Sbjct: 19  FVRRLSY-SPDLGRRIYGHVLPSHDQIHQRLLEICLGQCKLFKSRKVFDEMPQRLALALR 77

Query: 271 FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
            GK +H+ ++   +D    +G ++VD+Y K   +  A   FD L  KD+ A+ ++++ Y+
Sbjct: 78  IGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFL-EKDVTAWNSMLSMYS 136

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
             G+    L+ F  +    I  N+FT +  L+ C+    +  GR +H   +K G   + +
Sbjct: 137 SIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSY 196

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
              ALV MYAKC  I DA  VF+     +T  W  +  GYVK GL E+A+  F  M DEG
Sbjct: 197 CGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEG 256

Query: 451 YVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAG-KFTE 509
           + PD + FV V++    +G +++ +  F  +      +P +  +  MI   G+ G +   
Sbjct: 257 HRPDHLAFVTVINTYIRLGKLKDARLLFGEMS-----SPDVVAWNVMISGHGKRGCETVA 311

Query: 510 IENFITETK 518
           IE F    K
Sbjct: 312 IEYFFNMRK 320


>gi|224096620|ref|XP_002310674.1| predicted protein [Populus trichocarpa]
 gi|222853577|gb|EEE91124.1| predicted protein [Populus trichocarpa]
          Length = 908

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/600 (35%), Positives = 335/600 (55%), Gaps = 1/600 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  VF  M E + +SWN+++  Y  +G  ++ +  F  M  + K+ +  +LST+L G
Sbjct: 182 VEEACYVFSGMDEHDTISWNSMIAAYIRNGLCKESLRCFSWMFRVHKEINSTTLSTMLAG 241

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +   +K G+ +H++ ++ G   +   S +L+ MYS  G  ++A  VF  + + D+++W
Sbjct: 242 CGSVDNLKWGRGIHSLVLKFGWNSNVCASNTLITMYSDAGRCEDAELVFQGMVEKDMISW 301

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +++ C  Q G C +A K+   M       N    TS + A ++      G+ +HA++  
Sbjct: 302 NSMMACYAQDGNCLDALKLLATMFYMRRGANYVTFTSALAACSDPEFATEGKILHALVIH 361

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G   + +VGNALV++Y ++G +    +VF+ +  +D V+WNAL     D E PD+ L+ 
Sbjct: 362 VGLHENVIVGNALVTLYAKSGLMIEAKKVFQTMPKRDGVTWNALIGGHADSEEPDEALKA 421

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDV-GFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           F  M  +G   N  T   +L AC + +D+   G  +HA  I      +  V  SL+ MY 
Sbjct: 422 FKLMREEGVPINYITISNVLGACLAPNDLLEHGMPIHAFIILTGFQSDEYVQNSLITMYA 481

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G L  +   FD L +K+  A+ A++ + A  G  E ALK   +MR  G+  +EF+ + 
Sbjct: 482 KCGDLNSSNNIFDRLTSKNASAWNAMMAANAHHGHMEEALKFLLEMRRAGVNVDEFSFSE 541

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
           CL   + +A L  G+ LH +AVK G   + FV++A + MY KCG IDD   +      R 
Sbjct: 542 CLAAAAKLAILEEGQQLHGLAVKLGCDSNPFVASATMDMYGKCGEIDDVLRIIPRPINRS 601

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SWN++   + +HG  EKA E F  M++ G  PD +TFV +LSACSH G++EEG  ++ 
Sbjct: 602 RLSWNILTSSFSRHGFFEKAKETFHEMINLGVKPDHVTFVSLLSACSHGGMVEEGLAYYD 661

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           S+ K +GI   I H  C+ID+LGR+G+F E E FI E  ++P   VW +LL AC  HGN+
Sbjct: 662 SMIKEFGIPAKIGHCVCIIDLLGRSGRFAEAETFIKEMPVSPTDHVWRSLLAACKTHGNL 721

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           EL  K  E LL+L+P  +S YV  S+I AT G+W D   +R  +    IKK+P+CSW+++
Sbjct: 722 ELGRKAVENLLKLDPSDDSAYVLYSNICATTGKWEDVEKIRRQMGLNKIKKKPACSWVKL 781



 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 155/567 (27%), Positives = 281/567 (49%), Gaps = 6/567 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A +VF+ M   NVVSW AL+  Y + G+   VM+++  M+      +  ++S+V+    +
Sbjct: 84  AMKVFQEMIYKNVVSWTALMVAYVDYGEPSMVMNIYRRMRSEGMSCNDNTMSSVISTCVS 143

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G  V    I+ G   +  ++ SL+ M+   G  + A  VF  + + D ++W ++
Sbjct: 144 LENELLGYQVLGHVIKYGLETNVSVANSLISMFGYFGSVEEACYVFSGMDEHDTISWNSM 203

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    + G C+E+ + F+ M     + N   L++++       + + G  IH+++ K+G+
Sbjct: 204 IAAYIRNGLCKESLRCFSWMFRVHKEINSTTLSTMLAGCGSVDNLKWGRGIHSLVLKFGW 263

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            S+    N L++MY + GR      VF+ +  +D +SWN++ + +    +    L++   
Sbjct: 264 NSNVCASNTLITMYSDAGRCEDAELVFQGMVEKDMISWNSMMACYAQDGNCLDALKLLAT 323

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M       N  TF   L ACS       GK LHA  I   L  N +VG +LV +Y KSG 
Sbjct: 324 MFYMRRGANYVTFTSALAACSDPEFATEGKILHALVIHVGLHENVIVGNALVTLYAKSGL 383

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           + +A   F ++  +D   + A+I  +A + E + ALK F+ MR EG+  N  T+++ L  
Sbjct: 384 MIEAKKVFQTMPKRDGVTWNALIGGHADSEEPDEALKAFKLMREEGVPINYITISNVLGA 443

Query: 364 C-SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
           C +P   L +G  +H+  + TG   D +V  +L+ MYAKCG ++ +  +F     ++ ++
Sbjct: 444 CLAPNDLLEHGMPIHAFIILTGFQSDEYVQNSLITMYAKCGDLNSSNNIFDRLTSKNASA 503

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSI 481
           WN M+     HG  E+AL+    M   G   DE +F   L+A + + ++EEG++ H  ++
Sbjct: 504 WNAMMAANAHHGHMEEALKFLLEMRRAGVNVDEFSFSECLAAAAKLAILEEGQQLHGLAV 563

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
           K      P +   +  +D+ G+ G+  ++   I    +  + L W  L  + S HG  E 
Sbjct: 564 KLGCDSNPFVA--SATMDMYGKCGEIDDVLRIIPR-PINRSRLSWNILTSSFSRHGFFEK 620

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISA 568
            ++   +++ L  K + +  F S +SA
Sbjct: 621 AKETFHEMINLGVKPD-HVTFVSLLSA 646



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/444 (28%), Positives = 221/444 (49%), Gaps = 1/444 (0%)

Query: 23  LNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY-IKAGQVVHAMAIRLG 81
           ++G+  +G  ++ M  F  M+D   K S  ++++++     S + +  G  VH   +++G
Sbjct: 1   MSGFVRAGSYRESMRFFNEMRDFGVKPSGIAVASLVTACERSEWMLIEGVQVHGFIVKVG 60

Query: 82  CALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFN 141
              D F+  SLV +Y   GLA +A+KVF  +   +VV+W A++      G       I+ 
Sbjct: 61  LLSDVFVGTSLVHLYGNYGLAADAMKVFQEMIYKNVVSWTALMVAYVDYGEPSMVMNIYR 120

Query: 142 LMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENG 201
            MR   +  N   ++S++       ++  G  +   + KYG E++  V N+L+SM+   G
Sbjct: 121 RMRSEGMSCNDNTMSSVISTCVSLENELLGYQVLGHVIKYGLETNVSVANSLISMFGYFG 180

Query: 202 RVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILK 261
            V     VF  +   D++SWN++ + +       + LR F  M     + N  T   +L 
Sbjct: 181 SVEEACYVFSGMDEHDTISWNSMIAAYIRNGLCKESLRCFSWMFRVHKEINSTTLSTMLA 240

Query: 262 ACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFA 321
            C S+ ++ +G+ +H+  +K   + N     +L+ MY  +G  EDA + F  +  KD+ +
Sbjct: 241 GCGSVDNLKWGRGIHSLVLKFGWNSNVCASNTLITMYSDAGRCEDAELVFQGMVEKDMIS 300

Query: 322 YTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAV 381
           + +++  YAQ G    ALK    M      +N  T  S L  CS       G++LH++ +
Sbjct: 301 WNSMMACYAQDGNCLDALKLLATMFYMRRGANYVTFTSALAACSDPEFATEGKILHALVI 360

Query: 382 KTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALE 441
             G   ++ V  ALV +YAK G + +A+ VF+    RD  +WN +IGG+      ++AL+
Sbjct: 361 HVGLHENVIVGNALVTLYAKSGLMIEAKKVFQTMPKRDGVTWNALIGGHADSEEPDEALK 420

Query: 442 AFRMMLDEGYVPDEITFVVVLSAC 465
           AF++M +EG   + IT   VL AC
Sbjct: 421 AFKLMREEGVPINYITISNVLGAC 444


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/610 (34%), Positives = 338/610 (55%), Gaps = 12/610 (1%)

Query: 1   MELAKRVFKSMPEL--NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVL 58
           +++A+ VF  MP    NVV WN L+  YA +G  ++ + L+  M       ++F+   VL
Sbjct: 67  LKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVL 126

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
           K  +       G+ +H    RL    + ++S +LVD Y+KCG  D+A +VF ++   DVV
Sbjct: 127 KACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVV 186

Query: 119 AWGAIITCLD-QQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           AW ++I+     +G   E A++   M ++ V PN   +  ++ A  +    R G+ IH  
Sbjct: 187 AWNSMISGFSLHEGSYDEVARLLVQM-QNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGF 245

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALFSRFQDYESPDQ 236
             + GF  D +VG  ++ +Y +   + Y  R+F+ +   ++ V+W+A+   +   +   +
Sbjct: 246 CVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMRE 305

Query: 237 GLRIFYQMLLKGFKPNM-----CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
            L +F Q+L+   K ++      T   +++ C++L+D+  G  LH + IK     + +VG
Sbjct: 306 ALELFCQLLM--LKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVG 363

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
            +L+ MY K G +  A   F+ +  +D  ++TAII+ Y Q G +E  L+ F +M+L GI 
Sbjct: 364 NTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGIN 423

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
             + TLAS L  C+ +A L  G   H  A+  G   D  +  AL+ MYAKCG ID A  V
Sbjct: 424 PEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKV 483

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F     R   SWN MI  Y  HG+G +AL  F  M  EG  PD++TF+ ++SACSH GL+
Sbjct: 484 FDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLV 543

Query: 472 EEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLG 531
            EGK  F+++ + +GI P ++H+ACM+D+L RAG F E+ +FI +  L P+  VW  LL 
Sbjct: 544 AEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLS 603

Query: 532 ACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
           AC  + N+EL E  ++K+ +L P+   N+V  S++ +  GRW+D + VR     QG +K 
Sbjct: 604 ACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKS 663

Query: 592 PSCSWIEVDG 601
           P CSWIE+ G
Sbjct: 664 PGCSWIEISG 673



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 129/289 (44%), Gaps = 14/289 (4%)

Query: 254 CTFIVILKACSSLSDVGFGKQLHAHTIK-------HSLDGNHVVGTSLVDMYDKSGCLED 306
           CT  V+L++C     +  GK +H H +K        +L    V    LVD+Y     L+ 
Sbjct: 12  CT--VLLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKI 69

Query: 307 AGVAFDSLAN--KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
           A   FD + +  K++  +  +I +YA  G  E A+  + KM   GI  N FT    L  C
Sbjct: 70  ARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKAC 129

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
           S +   + GR +H    +     +++VSTALV  YAKCG +DDA+ VF     RD  +WN
Sbjct: 130 SALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWN 189

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKK 483
            MI G+  H      +    + +     P+  T V VL A + +  +  GK+ H   +++
Sbjct: 190 SMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRR 249

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
             G    +     ++D+ G+               +  N + W  ++GA
Sbjct: 250 --GFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGA 296


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 217/602 (36%), Positives = 339/602 (56%), Gaps = 8/602 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E  + VF+ MP+ NVV+W +LL GY +      VM LF  M+      + F+ ++VL  
Sbjct: 151 VEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSA 210

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+ G +  G+ VHA +++ GC    F+  SL++MYSKCGL + A  VF +++  D+V+W
Sbjct: 211 VASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSW 270

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             ++  L       EA ++F+  R S  K +Q   +++++             +H+ + K
Sbjct: 271 NTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLK 330

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAI-AHQDSVSWNALFSR-FQDYESPDQGL 238
           +GF SD  V  A++  Y + G +     +F  +   Q+ VSW A+     Q+ + P    
Sbjct: 331 HGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIP-LAA 389

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            +F +M     KPN  T+  +L A   +       Q+HA  IK +      VGT+L+  Y
Sbjct: 390 ALFSRMREDNVKPNEFTYSTVLTASIPI----LLPQIHAQIIKTNYQHAPSVGTALLASY 445

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G  E+A   F  + +KD+ A++A+++ Y+QAG+ + A   F KM ++G+K NEFT++
Sbjct: 446 SKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTIS 505

Query: 359 SCLNGC-SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           S ++ C SP A +  GR  H+I++K  +   + V +ALV MYA+ GSID A  VF+    
Sbjct: 506 SAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARKGSIDSARIVFERQTD 565

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           RD  SWN MI GY +HG  ++AL+ FR M   G   D  TF+ V+  C+H GL++EG+++
Sbjct: 566 RDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCTHAGLVKEGQQY 625

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F S+   + I+PT++H++CM+D+  RAGK  E  N I        A+VW  LLGAC  H 
Sbjct: 626 FDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLIEGMPFPAGAMVWRTLLGACRVHK 685

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           N+EL +  A+KLL LEP   + YV  S+I A  GRW +   VR L+ S+ +KKE  CSWI
Sbjct: 686 NVELGKLAAQKLLLLEPDDSATYVLLSNIYAAAGRWKERDEVRKLMDSKKVKKEAGCSWI 745

Query: 598 EV 599
           ++
Sbjct: 746 QI 747



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 131/474 (27%), Positives = 233/474 (49%), Gaps = 13/474 (2%)

Query: 69  AGQVVHAMAIRLGCALDKF---LSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT 125
           +G+ +H + ++  C  D+    +  +LVDMY KCG  ++   VF  +   +VV W +++T
Sbjct: 117 SGEQLHCLCVK--CGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLT 174

Query: 126 CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
              Q   C +   +F  MR   V PN F  TS++ A    G    G  +HA   K+G  S
Sbjct: 175 GYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRS 234

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
              V N+L++MY + G V     VF  +  +D VSWN L +     E   + L++F+   
Sbjct: 235 TVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSR 294

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
               K +  T+  ++K C++L  +   +QLH+  +KH    +  V T+++D Y K G L+
Sbjct: 295 ASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELD 354

Query: 306 DAGVAFDSL-ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
           DA   F  +  ++++ ++TA+I    Q  +  +A   F +MR + +K NEFT ++ L   
Sbjct: 355 DAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTAS 414

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
            P+        +H+  +KT +     V TAL+A Y+K G+ ++A ++FK    +D  +W+
Sbjct: 415 IPILLPQ----IHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWS 470

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC-SHMGLIEEGKKHFSSIKK 483
            M+  Y + G  + A   F  M  +G  P+E T    + AC S    I++G++ F +I  
Sbjct: 471 AMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQ-FHAISI 529

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
            Y     I   + ++ +  R G   +    + E +   + + W +++   + HG
Sbjct: 530 KYRYQDAICVGSALVTMYARKGSI-DSARIVFERQTDRDLVSWNSMISGYAQHG 582



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 145/287 (50%), Gaps = 8/287 (2%)

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGTSLVDMYDKSGCLEDAGVAFDSLANK 317
           +LK C  + D   G+QLH   +K   D   V VGT+LVDMY K G +ED  V F+ +  +
Sbjct: 105 VLKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKR 164

Query: 318 DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLH 377
           ++  +T+++T Y Q       +  F +MR EG+  N FT  S L+  +    +  GR +H
Sbjct: 165 NVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVH 224

Query: 378 SIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGE 437
           + +VK G    +FV  +L+ MY+KCG +++A+AVF+    RD  SWN ++ G +   L E
Sbjct: 225 AQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLL---LNE 281

Query: 438 KALEAFRMMLDEGYVPDEI---TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHF 494
             LEA ++  D      ++   T+  V+  C+++  +   ++  S + K +G        
Sbjct: 282 HQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLK-HGFHSDGNVM 340

Query: 495 ACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
             ++D   + G+  +  N       + N + W  ++G C  + +I L
Sbjct: 341 TAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPL 387


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/602 (34%), Positives = 332/602 (55%), Gaps = 1/602 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A ++F  MP  N VS+  L  G++ S   Q+   L   +     + ++F  +T+LK 
Sbjct: 54  LEDASKLFDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKL 113

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +         VHA   +LG   D F+  +L+D YS CG  D A +VF  I   D+V+W
Sbjct: 114 LVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSW 173

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             ++ C  +  C +++  +F  MR    +PN F +++ +++       + G+S+H    K
Sbjct: 174 TGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALK 233

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             ++ D  VG AL+ +Y ++G ++   + FE +   D + W+ + SR+   +   + L +
Sbjct: 234 VCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALEL 293

Query: 241 FYQMLLKGFK-PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           F +M       PN  TF  +L+AC+SL  +  G Q+H+  +K  LD N  V  +L+D+Y 
Sbjct: 294 FCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYA 353

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G +E++   F     K+  A+  II  Y Q G+ E AL  F  M    I+  E T +S
Sbjct: 354 KCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSS 413

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L   + +  L  GR +HS+ +KT +  D  V+ +L+ MYAKCG IDDA   F     +D
Sbjct: 414 VLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQD 473

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SWN +I GY  HGLG +AL  F MM      P+++TFV VLSACS+ GL+++G+ HF 
Sbjct: 474 EVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFK 533

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           S+ + YGI P I+H+ CM+ +LGR+G+F E    I E    P+ +VW  LLGAC  H N+
Sbjct: 534 SMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNL 593

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +L +  A+++LE+EP+ ++ +V  S++ AT  RW++ + VR  +  + +KKEP  SW+E 
Sbjct: 594 DLGKVCAQRVLEMEPQDDATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVEN 653

Query: 600 DG 601
            G
Sbjct: 654 QG 655



 Score =  225 bits (574), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 143/473 (30%), Positives = 245/473 (51%), Gaps = 7/473 (1%)

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127
            AG+ +H   ++ G +LD F    L++ Y   G  ++A K+F  +   + V++  +    
Sbjct: 20  NAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGF 79

Query: 128 DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDT 187
            +    Q A ++   +     + NQFV T+L++            S+HA + K G ++D 
Sbjct: 80  SRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADA 139

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK 247
            VG AL+  Y   G V    +VF+ I  +D VSW  + + + +    +  L +F QM + 
Sbjct: 140 FVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIM 199

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           G++PN  T    LK+C+ L     GK +H   +K   D +  VG +L+++Y KSG + +A
Sbjct: 200 GYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEA 259

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG-IKSNEFTLASCLNGCSP 366
              F+ +   DL  ++ +I+ YAQ+ +++ AL+ F +MR    +  N FT AS L  C+ 
Sbjct: 260 QQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACAS 319

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           +  L  G  +HS  +K G   ++FVS AL+ +YAKCG I+++  +F GS  ++  +WN +
Sbjct: 320 LVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTI 379

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIY 485
           I GYV+ G GEKAL  F  ML     P E+T+  VL A + +  +E G++ H  +IK +Y
Sbjct: 380 IVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMY 439

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKL-TPNALVWENLLGACSWHG 537
                + +   +ID+  + G+  +    +T  K+   + + W  L+   S HG
Sbjct: 440 NKDSVVAN--SLIDMYAKCGRIDDAR--LTFDKMDKQDEVSWNALICGYSIHG 488



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/416 (26%), Positives = 201/416 (48%), Gaps = 18/416 (4%)

Query: 157 SLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ 216
           ++++      D   G+S+H  I K+G   D    N L++ Y+  G +   S++F+ +   
Sbjct: 8   NMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLT 67

Query: 217 DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLH 276
           ++VS+  L   F       +  R+  ++  +G++ N   F  +LK   S+        +H
Sbjct: 68  NTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVH 127

Query: 277 AHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAE 336
           A+  K     +  VGT+L+D Y   G ++ A   FD +  KD+ ++T ++  YA+    E
Sbjct: 128 AYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHE 187

Query: 337 MALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALV 396
            +L  F +MR+ G + N FT+++ L  C+ +     G+ +H  A+K  +  D++V  AL+
Sbjct: 188 DSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALL 247

Query: 397 AMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF-RMMLDEGYVPDE 455
            +Y K G I +A+  F+     D   W++MI  Y +    ++ALE F RM      VP+ 
Sbjct: 248 ELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNN 307

Query: 456 ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIEN--- 512
            TF  VL AC+ + L+  G +  S + K+ G+   +     ++D+  + G   EIEN   
Sbjct: 308 FTFASVLQACASLVLLNLGNQIHSCVLKV-GLDSNVFVSNALMDVYAKCG---EIENSVK 363

Query: 513 -FITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            F   T+   N + W  ++      G ++L   D EK L L   M    + P++++
Sbjct: 364 LFTGSTE--KNEVAWNTIIV-----GYVQL--GDGEKALNLFSNMLGLDIQPTEVT 410


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/608 (33%), Positives = 344/608 (56%), Gaps = 10/608 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSK--FSLSTVL 58
           +E A +VF+ MPE N+VSWN+++ G++E+G  Q+  + F  M   E+ F     +L TVL
Sbjct: 152 VEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVL 211

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
              A    I+ G  VH +A++LG   +  ++ SL+DMYSKC     A  +F +    ++V
Sbjct: 212 PVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIV 271

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMR-----ESSVKPNQFVLTSLVRATTETGDQRCGES 173
           +W ++I    ++   ++  + F L++     ++ +K ++F + +++    E  + +  + 
Sbjct: 272 SWNSMIGGYARE---EDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKE 328

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           +H    ++G +S+ LV NA ++ Y   G +    RVF+ +  +   SWNAL   +     
Sbjct: 329 LHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSD 388

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
           P + L ++ QM   G  P+  T   +L ACS +  + +G+++H   +++ L  +  +G S
Sbjct: 389 PRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGIS 448

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           L+ +Y   G    A V FD + ++ L ++  +I  Y+Q G  + A+  FR+M  +GI+  
Sbjct: 449 LLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPY 508

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
           E  +      CS ++ L  G+ LH  A+K     D+FVS++++ MYAK G I  ++ +F 
Sbjct: 509 EIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFD 568

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
               +D ASWN++I GY  HG G++ALE F  ML  G  PD+ TF  +L ACSH GL+E+
Sbjct: 569 RLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVED 628

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           G ++F+ +  ++ I P ++H+ C++D+LGRAG+  +    I E    P++ +W +LL +C
Sbjct: 629 GLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSC 688

Query: 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPS 593
             HGN+ L EK A KLLELEP+   NYV  S++ A  G+W+D   VR  +   G++K+  
Sbjct: 689 RIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAG 748

Query: 594 CSWIEVDG 601
           CSWIEV G
Sbjct: 749 CSWIEVGG 756



 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 166/613 (27%), Positives = 289/613 (47%), Gaps = 42/613 (6%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDM-EKKFSKFSLSTVLKGFA 62
           ++ VF  +   N+  WNA+++ Y  +   +  M +F  +  + E K   F+L  V+K  A
Sbjct: 53  SRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACA 112

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
               +  GQ++H MA ++    D F+  +L+ MY KCGL + A+KVF  + + ++V+W +
Sbjct: 113 GLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNS 172

Query: 123 IITCLDQQGCCQEAAKIFN--LMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
           II    + G  QE+   F   L+ E S  P+   L +++       D   G ++H +  K
Sbjct: 173 IICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVK 232

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G   + +V N+L+ MY +   +S    +F+    ++ VSWN++   +   E   +   +
Sbjct: 233 LGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYL 292

Query: 241 FYQMLLKG--FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
             +M  +    K +  T + +L  C   S++   K+LH ++ +H L  N +V  + +  Y
Sbjct: 293 LQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAY 352

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            + G L  +   FD +  K + ++ A++  YAQ  +   AL  + +M   G+  + FT+ 
Sbjct: 353 TRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIG 412

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L  CS + +L  G  +H  A++ G  +D F+  +L+++Y  CG    A+ +F G   R
Sbjct: 413 SLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHR 472

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-- 476
              SWN+MI GY ++GL ++A+  FR ML +G  P EI  + V  ACS +  +  GK+  
Sbjct: 473 SLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELH 532

Query: 477 ------HF-------SSIKKIYGITPTIKHFACMID------------------ILGRAG 505
                 H        SSI  +Y     I     + D                  I GR  
Sbjct: 533 CFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGK 592

Query: 506 KFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLEL---EPKMESNYVF 562
           +  E+   +    L P+   +  +L ACS  G +E   +   ++L L   EPK+E +Y  
Sbjct: 593 EALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLE-HYTC 651

Query: 563 PSDISATQGRWND 575
             D+    GR +D
Sbjct: 652 VVDMLGRAGRIDD 664



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 123/445 (27%), Positives = 224/445 (50%), Gaps = 7/445 (1%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKF-LSCSLVDMYSKCGLADNALKVFYRI 112
           +  +L+       I+ G+ +H M        + F L+  ++ MYS CG   ++  VF ++
Sbjct: 1   MGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKL 60

Query: 113 KDPDVVAWGAIITCLDQQGCCQEAAKIFN-LMRESSVKPNQFVLTSLVRATTETGDQRCG 171
           +  ++  W AI++   +    ++A  IF+ L+  +  KP+ F L  +++A     D   G
Sbjct: 61  RRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLG 120

Query: 172 ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY 231
           + IH +  K    SD  VGNAL++MY + G V    +VFE +  ++ VSWN++   F + 
Sbjct: 121 QIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSEN 180

Query: 232 ESPDQGLRIFYQMLL--KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
               +    F +ML+  + F P++ T + +L  C+   D+  G  +H   +K  L+   +
Sbjct: 181 GFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELM 240

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           V  SL+DMY K   L +A + FD    K++ ++ ++I  YA+  +        +KM+ E 
Sbjct: 241 VNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTED 300

Query: 350 --IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
             +K++EFT+ + L  C   + L + + LH  + + G   +  V+ A +A Y +CG++  
Sbjct: 301 AKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCS 360

Query: 408 AEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
           +E VF     +  +SWN ++ GY ++    KAL+ +  M D G  PD  T   +L ACS 
Sbjct: 361 SERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSR 420

Query: 468 MGLIEEGKK-HFSSIKKIYGITPTI 491
           M  +  G++ H  +++    + P I
Sbjct: 421 MKSLHYGEEIHGFALRNGLAVDPFI 445



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 146/280 (52%), Gaps = 8/280 (2%)

Query: 258 VILKACSSLSDVGFGKQLHAH-TIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
           V+L+AC    D+  G++LH   +       + V+ T ++ MY   G   D+ + FD L  
Sbjct: 3   VLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRR 62

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFTLASCLNGCSPVATLANGRL 375
           K+LF + AI+++Y +    E A+  F ++  +   K + FTL   +  C+ +  L  G++
Sbjct: 63  KNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQI 122

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           +H +A K   + D+FV  AL+AMY KCG +++A  VF+    R+  SWN +I G+ ++G 
Sbjct: 123 IHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGF 182

Query: 436 GEKALEAFRMML--DEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIK 492
            +++  AFR ML  +E +VPD  T V VL  C+    IE+G   H  ++K   G+   + 
Sbjct: 183 LQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVK--LGLNEELM 240

Query: 493 HFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
               +ID+  +  +F      + +     N + W +++G 
Sbjct: 241 VNNSLIDMYSKC-RFLSEAQLLFDKNDKKNIVSWNSMIGG 279


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/599 (34%), Positives = 340/599 (56%), Gaps = 3/599 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           ++++F   P+  +   N LL  ++ +   ++ ++LF  ++         SLS VLK    
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G+ VH   I+ G   D  +  SLVDMY K    ++  +VF  ++  +VV+W ++
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    Q G  ++A K+F+ M+   +KPN F   +++      G    G  +H ++ K G 
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGL 224

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           +S   VGN++V+MY ++  VS    VF+++ ++++VSWN++ + F       +   +FY+
Sbjct: 225 DSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYR 284

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M L+G K     F  ++K C+++ ++ F KQLH   IK+  D +  + T+L+  Y K   
Sbjct: 285 MRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSE 344

Query: 304 LEDAGVAFDSLAN-KDLFAYTAIITSYAQAGEAEMALKCFRKMRLE-GIKSNEFTLASCL 361
           ++DA   F  +   +++ ++TAII+ Y Q G  + A+  F +MR E G++ NEFT +S L
Sbjct: 345 IDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVL 404

Query: 362 NGCS-PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           N C+ P A++  G+  HS ++K+G    + VS+ALV MYAK G+I+ A  VFK    RD 
Sbjct: 405 NACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDL 464

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SWN MI GY +HG G+K+L+ F  M  +    D ITF+ V+SAC+H GL+ EG+++F  
Sbjct: 465 VSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDL 524

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + K Y I PT++H++CM+D+  RAG   +  + I +      A +W  LL AC  H N++
Sbjct: 525 MVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQ 584

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           L E  AEKL+ L+P+  + YV  S+I AT G W + + VR L+  + +KKE   SWIEV
Sbjct: 585 LGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEV 643



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 128/450 (28%), Positives = 224/450 (49%), Gaps = 10/450 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E  +RVF  M   NVVSW +LL GY ++G  ++ + LF  M+    K + F+ + VL G
Sbjct: 143 VEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGG 202

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A  G ++ G  VH M I+ G     F+  S+V+MYSK  +  +A  VF  +++ + V+W
Sbjct: 203 LAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSW 262

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I      G   EA ++F  MR   VK  Q +  ++++      +    + +H  + K
Sbjct: 263 NSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIK 322

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH--QDSVSWNALFSRFQDYESPDQGL 238
            G + D  +  AL+  Y +   +    ++F  + H  Q+ VSW A+ S +      D+ +
Sbjct: 323 NGSDFDLNIKTALMVAYSKCSEIDDAFKLF-CMMHGVQNVVSWTAIISGYVQNGRTDRAM 381

Query: 239 RIFYQMLL-KGFKPNMCTFIVILKACSS-LSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            +F QM   +G +PN  TF  +L AC++  + V  GKQ H+ +IK        V ++LV 
Sbjct: 382 NLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVT 441

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           MY K G +E A   F    ++DL ++ ++I+ YAQ G  + +LK F +MR + ++ +  T
Sbjct: 442 MYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGIT 501

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLD-MFVSTALVAMYAKCGSIDDAEAVFKGS 415
               ++ C+    +  G+    + VK  H++  M   + +V +Y++ G ++ A  +    
Sbjct: 502 FIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKM 561

Query: 416 ALRDTAS-WNMMIGGYVKH---GLGEKALE 441
                A+ W  ++     H    LGE A E
Sbjct: 562 PFPAGATIWRTLLAACRVHLNVQLGELAAE 591



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 89/264 (33%), Positives = 137/264 (51%)

Query: 205 YGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACS 264
           +  ++F+    Q     N L   F   +   + L +F  +   G   +  +   +LK C 
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCG 103

Query: 265 SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA 324
            L D   GKQ+H   IK     +  VGTSLVDMY K+  +ED    FD +  K++ ++T+
Sbjct: 104 CLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTS 163

Query: 325 IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           ++  Y Q G  E ALK F +M+LEGIK N FT A+ L G +    +  G  +H++ +K+G
Sbjct: 164 LLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSG 223

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
               +FV  ++V MY+K   + DA+AVF     R+  SWN MI G+V +GL  +A E F 
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFY 283

Query: 445 MMLDEGYVPDEITFVVVLSACSHM 468
            M  EG    +  F  V+  C+++
Sbjct: 284 RMRLEGVKLTQTIFATVIKLCANI 307


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/604 (33%), Positives = 332/604 (54%), Gaps = 3/604 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A R+F  M + N  SW  L+ G AE+G        FC M+       +F+ S +L+ 
Sbjct: 121 IDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQI 180

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 I+ G +VHA  +  G     F+S +L++MY+K    +++ KVF  + + +VV+W
Sbjct: 181 CIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSW 240

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+IT         +A  +F  M    V P+      + +A     D    + +     +
Sbjct: 241 NAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALE 300

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEA--IAHQDSVSWNALFSRFQDYESPDQGL 238
            G +S+TLVG AL+ M  + G +     +F +  I  + +  WNA+ S +      ++ L
Sbjct: 301 LGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKAL 360

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGTSLVDM 297
            +F +M       +  T+  +  A ++L  +  GK++HA  IK  L+ N+V +  ++ + 
Sbjct: 361 ELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANA 420

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K G LED    F+ + ++DL ++T+++T+Y+Q  E + A++ F  MR EGI  N+FT 
Sbjct: 421 YAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTF 480

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           +S L  C+ +  L  G+ +H I  K G  +D  + +ALV MYAKCG + DA+ VF   + 
Sbjct: 481 SSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISN 540

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
            DT SW  +I G+ +HG+ + AL+ FR M+  G  P+ +TF+ VL ACSH GL+EEG ++
Sbjct: 541 ADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQY 600

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F  +KK YG+ P ++H+AC++D+L R G   +   FI+   + PN +VW+ LLGAC  HG
Sbjct: 601 FKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHG 660

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           N+EL E  A+K+L  + +  + YV  S+     G + D   +R L+  QG+KKEP CSWI
Sbjct: 661 NVELGELAAQKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHLMKEQGVKKEPGCSWI 720

Query: 598 EVDG 601
            V+G
Sbjct: 721 SVNG 724



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 156/570 (27%), Positives = 269/570 (47%), Gaps = 56/570 (9%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKF-------LSCSLVDMYSKCGLADNAL 106
           L  +L+   ++ ++K  + VH   ++      KF       L   +   YSKC   D A 
Sbjct: 71  LVDLLRDCVDARFLKQAKTVHGFLLK-----SKFSNHHSLVLLNHVAHAYSKCSDIDAAC 125

Query: 107 KVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
           ++F ++   +  +W  +I  L + G   +  + F  M+   + P+QF  + +++      
Sbjct: 126 RLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLD 185

Query: 167 DQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS 226
               G  +HA I   GF S T V  AL++MY +   +    +VF  +   + VSWNA+ +
Sbjct: 186 SIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMIT 245

Query: 227 RFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDG 286
            F   +       +F +M+ +G  P+  TFI + KA   L DV   K++  + ++  +D 
Sbjct: 246 GFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDS 305

Query: 287 NHVVGTSLVDMYDKSGCLEDAGVAFDS--LANKDLFAYTAIITSYAQAGEAEMALKCFRK 344
           N +VGT+L+DM  K G L++A   F+S  +  +    + A+I+ Y ++G  E AL+ F K
Sbjct: 306 NTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAK 365

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF-VSTALVAMYAKCG 403
           M    I  + +T  S  N  + +  L+ G+ +H+ A+K+G  ++   +S A+   YAKCG
Sbjct: 366 MCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCG 425

Query: 404 SIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           S++D   VF     RD  SW  ++  Y +    +KA+E F  M  EG  P++ TF  VL 
Sbjct: 426 SLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLV 485

Query: 464 ACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDI------LGRAGK-FTEIENFIT- 515
           +C+++ L+E G++    I K+ G+       + ++D+      LG A K F  I N  T 
Sbjct: 486 SCANLCLLEYGQQVHGIICKV-GLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTV 544

Query: 516 --------------------------ETKLTPNALVWENLLGACSWHGNIELDEKDAEKL 549
                                     +  + PNA+ +  +L ACS HG +  +     KL
Sbjct: 545 SWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACS-HGGLVEEGLQYFKL 603

Query: 550 LE----LEPKMESNYVFPSDISATQGRWND 575
           ++    L P+ME +Y    D+ +  G  ND
Sbjct: 604 MKKTYGLVPEME-HYACIVDLLSRVGHLND 632


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/601 (32%), Positives = 323/601 (53%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A ++F  MP+ N +S+  L  GY+      + +H    +     + + F  +T+LK 
Sbjct: 86  LQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNPFVFTTLLKL 145

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +         +HA   +LG   D F+  +L+D YS  G  D A  VF  I   D+V+W
Sbjct: 146 LVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSW 205

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             ++ C  +    +E+ ++FN MR    KPN F ++  +++         G+S+H    K
Sbjct: 206 TGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALK 265

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             ++ D  VG AL+ +Y ++G +    R+FE +   D + W+ + +R+   +   + L +
Sbjct: 266 GCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDL 325

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M      PN  TF  +L+AC+S   +  GKQ+H+  +K  L+ N  V  +++D+Y K
Sbjct: 326 FLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAK 385

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +E++   F+ L +++   +  II  Y Q G+ E A+  F  M    ++  E T +S 
Sbjct: 386 CGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSV 445

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L   + +A L  G  +HS+ +KT +  D  V+ +L+ MYAKCG I+DA   F     RD 
Sbjct: 446 LRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDE 505

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SWN MI GY  HG+  +AL  F MM      P+++TFV VLSACS+ GL+ +G+ HF S
Sbjct: 506 VSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFES 565

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + K Y I P I+H+ CM+ +LGR G+F E    I E    P+ +VW  LLGAC  H  ++
Sbjct: 566 MSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVD 625

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           L    A+ +LE+EP  ++ +V  S++ AT GRW++ + VR  +  + ++KEP  SW+E  
Sbjct: 626 LGRVCAQHVLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQ 685

Query: 601 G 601
           G
Sbjct: 686 G 686



 Score =  218 bits (556), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 135/471 (28%), Positives = 238/471 (50%), Gaps = 6/471 (1%)

Query: 69  AGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLD 128
           AG+ +H   ++ G +LD F    L++ Y +     +A K+F  +   + +++  +     
Sbjct: 53  AGKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYS 112

Query: 129 QQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTL 188
           +     +A      + +   + N FV T+L++            ++HA + K G  +D  
Sbjct: 113 RDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAF 172

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG 248
           VG AL+  Y   G V     VF+ I  +D VSW  + + + +    ++ L++F QM + G
Sbjct: 173 VGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMG 232

Query: 249 FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
           +KPN  T    LK+C  L     GK +H   +K   D +  VG +L+++Y KSG + DA 
Sbjct: 233 YKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQ 292

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
             F+ +   DL  ++ +I  YAQ+  ++ AL  F +MR   +  N FT AS L  C+   
Sbjct: 293 RLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSV 352

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
           +L  G+ +HS  +K G   ++FVS A++ +YAKCG I+++  +F+    R+  +WN +I 
Sbjct: 353 SLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIV 412

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGI 487
           GYV+ G GE+A+  F  ML+    P E+T+  VL A + +  +E G + H  +IK +Y  
Sbjct: 413 GYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNK 472

Query: 488 TPTIKHFACMIDILGRAGKFTEIENFITETKLTP-NALVWENLLGACSWHG 537
              + +   +ID+  + G+  +    +T  K+   + + W  ++   S HG
Sbjct: 473 DTVVAN--SLIDMYAKCGRINDAR--LTFDKMNKRDEVSWNAMICGYSMHG 519



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 194/404 (48%), Gaps = 13/404 (3%)

Query: 166 GDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALF 225
            D   G+ +H  I K G   D    N L++ Y+++  +   S++F+ +   +++S+  L 
Sbjct: 49  ADPIAGKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLA 108

Query: 226 SRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLD 285
             +       Q L    ++  +G + N   F  +LK   S+        LHA   K    
Sbjct: 109 QGYSRDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHH 168

Query: 286 GNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM 345
            +  VGT+L+D Y   G ++ A   FD +  KD+ ++T ++  YA+    E +L+ F +M
Sbjct: 169 ADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQM 228

Query: 346 RLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSI 405
           R+ G K N FT++  L  C  +     G+ +H  A+K  +  D+FV  AL+ +YAK G I
Sbjct: 229 RIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEI 288

Query: 406 DDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC 465
            DA+ +F+     D   W++MI  Y +    ++AL+ F  M     VP+  TF  VL AC
Sbjct: 289 IDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQAC 348

Query: 466 SHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTP--NA 523
           +    ++ GK+  S + K +G+   +     ++D+  + G   EIEN +   +  P  N 
Sbjct: 349 ASSVSLDLGKQIHSCVLK-FGLNSNVFVSNAIMDVYAKCG---EIENSMKLFEELPDRND 404

Query: 524 LVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           + W  ++      G ++L   D E+ + L   M  + + P++++
Sbjct: 405 VTWNTIIV-----GYVQLG--DGERAMNLFTHMLEHDMQPTEVT 441


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/611 (34%), Positives = 331/611 (54%), Gaps = 15/611 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + LA++VF  +P  +  ++NAL+  Y+  G     + L+ SM       +K++   VLK 
Sbjct: 49  LALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKA 108

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    + AG+ +HA A  +G   D F+S +L+D+Y +C     A  VF ++   DVVAW
Sbjct: 109 CSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAW 168

Query: 121 GAIITCLDQQGCCQEA-AKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            A++      G    A A + ++     ++PN   L SL+    + G    G S+HA  C
Sbjct: 169 NAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAY-C 227

Query: 180 KYGF----ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD 235
              +    E   L+G AL+ MY +   + Y  RVF  +  ++ V+W+AL   F   +   
Sbjct: 228 LRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMT 287

Query: 236 QGLRIFYQMLLKGFKPNMC-----TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
           +   +F  ML++G    MC     +    L+ C+SL+D+  G QLHA   K  +  +   
Sbjct: 288 EAFNLFKDMLVEG----MCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTA 343

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
           G SL+ MY K+G + +A + FD +A KD  +Y A+++ Y Q G+AE A   F+KM+   +
Sbjct: 344 GNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNV 403

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
           + +  T+ S +  CS +A L +GR  H   +  G  L+  +  +L+ MYAKCG ID +  
Sbjct: 404 QPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQ 463

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           VF     RD  SWN MI GY  HGLG++A   F  M ++G+ PD++TF+ +++ACSH GL
Sbjct: 464 VFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGL 523

Query: 471 IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
           + EGK  F ++   YGI P ++H+ CM+D+L R G   E   FI    L  +  VW  LL
Sbjct: 524 VTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALL 583

Query: 531 GACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKK 590
           GAC  H NI+L ++ +  + +L P+   N+V  S+I +  GR+++ + VR +   +G KK
Sbjct: 584 GACRIHKNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKK 643

Query: 591 EPSCSWIEVDG 601
            P CSWIE++G
Sbjct: 644 SPGCSWIEING 654



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 153/333 (45%), Gaps = 10/333 (3%)

Query: 194 VSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
           +  ++  G+++   +VF+ I   D+ ++NAL   +         + ++  ML     PN 
Sbjct: 40  LEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNK 99

Query: 254 CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
            TF  +LKACS+L+D+  G+ +HAH     L  +  V T+L+D+Y +      A   F  
Sbjct: 100 YTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAK 159

Query: 314 LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE-GIKSNEFTLASCLNGCSPVATLAN 372
           +  +D+ A+ A++  YA  G    A+     M+   G++ N  TL S L   +    L  
Sbjct: 160 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQ 219

Query: 373 GRLLHSIAVKTGHLLD-----MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
           G  +H+  ++    LD     + + TAL+ MYAKC  +  A  VF G  +R+  +W+ +I
Sbjct: 220 GTSVHAYCLRA--YLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALI 277

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVV-VLSACSHMGLIEEGKKHFSSIKKIYG 486
           GG+V      +A   F+ ML EG      T V   L  C+ +  +  G +  + + K  G
Sbjct: 278 GGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAK-SG 336

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKL 519
           I   +     ++ +  +AG   E      E  +
Sbjct: 337 IHADLTAGNSLLSMYAKAGLINEATMLFDEIAI 369


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/604 (34%), Positives = 337/604 (55%), Gaps = 3/604 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKF--SKFSLSTVL 58
           ++ A +VF  MP  N+VSWN++++G++E+G  +    +   M   E+       +L TVL
Sbjct: 82  VDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVL 141

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
              A    ++ G  +H +A++LG + D  ++ SLVDMYSKCG    A  +F +    + V
Sbjct: 142 PVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAV 201

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMR-ESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           +W  +I  L  +G   EA  +F  M+ +  ++ N+  + +++ A  E    R  + +H  
Sbjct: 202 SWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGY 261

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
             ++GF+ D LV N  V+ Y + G +    RVF ++  +   SWNAL         P + 
Sbjct: 262 SIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKA 321

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           L ++ QM   G  P+  T   +L A + L  + +GK++H   ++H L+ +  +G SL+ +
Sbjct: 322 LNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSL 381

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y   G    A + FD +  K   ++ A+I+ Y+Q G  E AL  FRK+  +G + ++  +
Sbjct: 382 YIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAV 441

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
            S L  CS  + L  G+  H  A+K   + D+FV+ + + MYAK G I ++ +VF G   
Sbjct: 442 VSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKN 501

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           +D ASWN +I  Y  HG GE+++E F  M   G +PD  TF+ +L+ CSH GL+EEG K+
Sbjct: 502 KDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKY 561

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F+ ++  +GI P ++H+AC++D+LGRAG+  +    + E    P++ VW +LL  C   G
Sbjct: 562 FNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLLSFCRNFG 621

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
            +E+ +  AEKLLELEPK   NYV  S++ A  GRW+D   VR ++   G++K+  CSWI
Sbjct: 622 ELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIKDIGLQKDAGCSWI 681

Query: 598 EVDG 601
           E+ G
Sbjct: 682 ELGG 685



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 150/554 (27%), Positives = 260/554 (46%), Gaps = 22/554 (3%)

Query: 42  MKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGL 101
           + D E     F+   V+K    S     G+V+H M I++G  LD F+  +L+ MY K G 
Sbjct: 22  ITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGF 81

Query: 102 ADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMR--ESSVKPNQFVLTSLV 159
            D A+KVF+ +   ++V+W +II+   + G  ++   +   M   E  + P+   L +++
Sbjct: 82  VDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVL 141

Query: 160 RATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSV 219
                  D + G  IH +  K G   D  V N+LV MY + G ++    +F+    +++V
Sbjct: 142 PVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAV 201

Query: 220 SWNALFSRFQDYESPDQGLRIFYQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAH 278
           SWN +           +   +F +M ++   + N  T + IL AC  +S +   K+LH +
Sbjct: 202 SWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGY 261

Query: 279 TIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMA 338
           +I+H    + +V    V  Y K G L  A   F S+  K + ++ A+I   AQ G+   A
Sbjct: 262 SIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKA 321

Query: 339 LKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAM 398
           L  + +M   G+  + FT+ S L   + + +L  G+ +H   ++ G  +D F+  +L+++
Sbjct: 322 LNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSL 381

Query: 399 YAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITF 458
           Y  CG    A  +F G   + + SWN MI GY ++GL E AL  FR ++ +G+ P +I  
Sbjct: 382 YIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAV 441

Query: 459 VVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET 517
           V VL ACS    +  GK+ H  ++K +  +   +      ID+  ++G   E  +     
Sbjct: 442 VSVLGACSQQSALRLGKETHCYALKAL--LMEDVFVACSTIDMYAKSGCIKESRSVFDGL 499

Query: 518 KLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFS 577
           K   +   W  ++ A   HG       D E+ +EL  +M      P   +        F 
Sbjct: 500 K-NKDLASWNAIIAAYGVHG-------DGEESIELFERMRKVGQMPDGFT--------FI 543

Query: 578 GVRALLSSQGIKKE 591
           G+  + S  G+ +E
Sbjct: 544 GILTVCSHAGLVEE 557



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/365 (30%), Positives = 178/365 (48%), Gaps = 10/365 (2%)

Query: 142 LMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENG 201
           L+ ++    + F    +++A T + D+  GE IH ++ K G   D  VGNAL++MY + G
Sbjct: 21  LITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFG 80

Query: 202 RVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL--KGFKPNMCTFIVI 259
            V    +VF  +  ++ VSWN++ S F +         +  +M+   +G  P++ T + +
Sbjct: 81  FVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTV 140

Query: 260 LKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL 319
           L  C+   DV  G ++H   +K  L  +  V  SLVDMY K G L +A + FD    K+ 
Sbjct: 141 LPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNA 200

Query: 320 FAYTAIITSYAQAGEAEMALKCFRKMRL-EGIKSNEFTLASCLNGCSPVATLANGRLLHS 378
            ++  +I      G    A   FR+M++ E I+ NE T+ + L  C  ++ L + + LH 
Sbjct: 201 VSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHG 260

Query: 379 IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEK 438
            +++ G   D  V+   VA YAKCG +  AE VF     +   SWN +IGG  ++G   K
Sbjct: 261 YSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRK 320

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK-------KHFSSIKKIYGITPTI 491
           AL  +  M   G VPD  T   +L A +H+  +  GK       +H   I    GI+   
Sbjct: 321 ALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLS 380

Query: 492 KHFAC 496
            +  C
Sbjct: 381 LYIHC 385


>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
 gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 727

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/601 (34%), Positives = 335/601 (55%), Gaps = 5/601 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESG---DGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           A  +F ++   +VVSWN+L+ GY+++G       VM LF  M+  +   + ++L+ + K 
Sbjct: 68  AHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKA 127

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ++      G+  HA+ +++    D ++  SLV MY K GL ++ LKVF  + + +   W
Sbjct: 128 ESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTW 187

Query: 121 GAIITCLDQQGCCQEAAKIFNL-MRESSVKPNQ-FVLTSLVRATTETGDQRCGESIHAVI 178
             +++    +G  +EA K+FNL +RE     +  +V T+++ +   T     G  IH + 
Sbjct: 188 STMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCIT 247

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K G      + NALV+MY +   ++   ++F++   ++S++W+A+ + +       + +
Sbjct: 248 IKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAV 307

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           ++F +M   G KP+  T + +L ACS +  +  GKQLH+  +K   + +    T+LVDMY
Sbjct: 308 KLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMY 367

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K+GCL DA   FD L  +D+  +T++I+ Y Q  + E AL  +R+M+  GI  N+ T+A
Sbjct: 368 AKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMA 427

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L  CS +ATL  G+ +H   +K G  L++ + +AL  MY+KCGS++D   VF+ +  +
Sbjct: 428 SVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNK 487

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D  SWN MI G   +G G++ALE F  ML EG  PD++TFV ++SACSH G +E G  +F
Sbjct: 488 DVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYF 547

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           + +    G+ P + H+ACM+D+L RAG+  E + FI    +     +W  LL AC  HG 
Sbjct: 548 NMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGK 607

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
            EL     EKL+ L  +  S YV  S I    GR  D   V   + + G+ KE  CSWIE
Sbjct: 608 CELGVYAGEKLMALGSRESSTYVQLSGIYTALGRMRDVERVWKHMRANGVSKEVGCSWIE 667

Query: 599 V 599
           +
Sbjct: 668 L 668



 Score =  234 bits (598), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 156/522 (29%), Positives = 258/522 (49%), Gaps = 19/522 (3%)

Query: 55  STVLKGFANSGYIK---AGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYR 111
           ST+LK   +    +   AG+ VH   IR G +     +  LV+ Y+KCG    A  +F  
Sbjct: 15  STLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNA 74

Query: 112 IKDPDVVAWGAIITCLDQQGCCQEA---AKIFNLMRESSVKPNQFVLTSLVRATTETGDQ 168
           I   DVV+W ++IT   Q G    +    ++F  MR   + PN + L  + +A +     
Sbjct: 75  IICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSS 134

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228
             G   HA++ K     D  V  +LV MY + G V  G +VF  +  +++ +W+ + S +
Sbjct: 135 TVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGY 194

Query: 229 QDYESPDQGLRIFYQMLLKGFKPNMC--TFIVILKACSSLSDVGFGKQLHAHTIKHSLDG 286
                 ++ +++F   L +  + +     F  +L + ++   VG G+Q+H  TIK+ L G
Sbjct: 195 ATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLG 254

Query: 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR 346
              +  +LV MY K   L +A   FDS  +++   ++A++T Y+Q GE+  A+K F +M 
Sbjct: 255 FVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMF 314

Query: 347 LEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSID 406
             GIK +E+T+   LN CS +  L  G+ LHS  +K G    +F +TALV MYAK G + 
Sbjct: 315 SAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLA 374

Query: 407 DAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
           DA   F     RD A W  +I GYV++   E+AL  +R M   G +P++ T   VL ACS
Sbjct: 375 DARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACS 434

Query: 467 HMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV 525
            +  +E GK+ H  +IK  +G+   I   + +  +  + G   E  N +       + + 
Sbjct: 435 SLATLELGKQVHGHTIKHGFGLEVPIG--SALSTMYSKCGSL-EDGNLVFRRTPNKDVVS 491

Query: 526 WENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           W  ++   S +G         ++ LEL  +M +  + P D++
Sbjct: 492 WNAMISGLSHNGQ-------GDEALELFEEMLAEGMEPDDVT 526



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 92/219 (42%), Gaps = 10/219 (4%)

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
           TL   L   S    L  GR +H   ++TG    +  +  LV  YAKCG +  A ++F   
Sbjct: 16  TLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAI 75

Query: 416 ALRDTASWNMMIGGYVKHG---LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE 472
             +D  SWN +I GY ++G        ++ FR M  +  +P+  T   +  A S +    
Sbjct: 76  ICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSST 135

Query: 473 EGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTP--NALVWENLL 530
            G++  + + K+     +         ++G   K   +E+ +      P  N   W  ++
Sbjct: 136 VGRQAHALVVKM----SSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMV 191

Query: 531 GACSWHGNIELDEKDAEKLL-ELEPKMESNYVFPSDISA 568
              +  G +E   K     L E E   +S+YVF + +S+
Sbjct: 192 SGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSS 230



 Score = 45.4 bits (106), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E    VF+  P  +VVSWNA+++G + +G G + + LF  M     +    +   ++  
Sbjct: 474 LEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISA 533

Query: 61  FANSGYIKAGQVVHAM---AIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD- 116
            ++ G+++ G     M    I L   +D + +C +VD+ S+ G    A K F    + D 
Sbjct: 534 CSHKGFVERGWFYFNMMSDQIGLDPKVDHY-AC-MVDLLSRAGQLKEA-KEFIESANIDH 590

Query: 117 -VVAWGAIITCLDQQGCCQ 134
            +  W  +++     G C+
Sbjct: 591 GLCLWRILLSACKNHGKCE 609


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/597 (33%), Positives = 337/597 (56%), Gaps = 2/597 (0%)

Query: 4   AKRVFKSMPEL-NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           A+++F  MPE  +VVSWN++++ Y+ +G   + + LF  M+      + ++    L+   
Sbjct: 234 ARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACE 293

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           +S +IK G  +HA  ++    ++ F++ +L+ MY++ G    A  +FY + D D ++W +
Sbjct: 294 DSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNS 353

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +++   Q G   EA + ++ MR++  KP+   + S++ A+  +G+   G  IHA   K G
Sbjct: 354 MLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNG 413

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            +SD  VGN+LV MY +   + Y   +F+ +  +D VSW  + +      S  + L +F 
Sbjct: 414 LDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFR 473

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           ++ L+G   ++     IL ACS L  +   K++H++ I+  L  + V+   +VD+Y + G
Sbjct: 474 EVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLS-DLVLQNGIVDVYGECG 532

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            ++ A   F+ +  KD+ ++T++I+ Y   G A  AL+ F  M+  G++ +  +L S L+
Sbjct: 533 NVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILS 592

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
             + ++ L  G+ +H   ++ G +L+  +++ LV MYA+CG+++ +  VF     +D   
Sbjct: 593 AAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVL 652

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           W  MI  Y  HG G  A++ FR M DE   PD I FV VL ACSH GL+ EG++   S+K
Sbjct: 653 WTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMK 712

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
             Y + P  +H+AC++D+LGRA    E   F+   ++ P A VW  LLGAC  H N EL 
Sbjct: 713 YEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELG 772

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           E  A+KLLE++P+   NYV  S++ + + RW D   VR  + + G+KK P CSWIEV
Sbjct: 773 EIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMRMKASGLKKNPGCSWIEV 829



 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 164/569 (28%), Positives = 301/569 (52%), Gaps = 19/569 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F  MP   + +WNA++  Y  +G+    + L+  M+         +   +LK    
Sbjct: 133 AEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGL 192

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP-DVVAWGA 122
               + G  VH +AI+ G     F++ S+V MY+KC   + A ++F R+ +  DVV+W +
Sbjct: 193 LKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNS 252

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I+     G   EA ++F  M+++S+ PN +   + ++A  ++   + G  IHA + K  
Sbjct: 253 MISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSS 312

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           +  +  V NAL++MY   G++   + +F  +   D++SWN++ S F       + L+ ++
Sbjct: 313 YYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYH 372

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M   G KP++   I I+ A +   +   G Q+HA+ +K+ LD +  VG SLVDMY K  
Sbjct: 373 EMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFC 432

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            ++     FD + +KD+ ++T II  +AQ G    AL+ FR+++LEGI  +   ++S L 
Sbjct: 433 SMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILL 492

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            CS +  +++ + +HS  ++ G L D+ +   +V +Y +CG++D A  +F+    +D  S
Sbjct: 493 ACSGLKLISSVKEIHSYIIRKG-LSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVS 551

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSI 481
           W  MI  YV +GL  +ALE F +M + G  PD I+ V +LSA + +  +++GK+ H   I
Sbjct: 552 WTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLI 611

Query: 482 KKIYGITPTIKHFACMIDILGRAG---KFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           +K + +  ++   + ++D+  R G   K   + NFI    L    ++W +++ A   HG 
Sbjct: 612 RKGFVLEGSLA--STLVDMYARCGTLEKSRNVFNFIRNKDL----VLWTSMINAYGMHGC 665

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDIS 567
                      ++L  +ME   + P  I+
Sbjct: 666 -------GRAAIDLFRRMEDESIAPDHIA 687



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 146/538 (27%), Positives = 253/538 (47%), Gaps = 20/538 (3%)

Query: 39  FCSMKDM--EKKFSKFSL----STVLKGFANSGYIKAGQVVHAMAIRLGCALDK-FLSCS 91
           F S+ D+   +  S+FSL    S+VL+   +   +  GQ VHA  I      +  FLS  
Sbjct: 60  FQSLTDLFANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTR 119

Query: 92  LVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPN 151
           LV MY KCG   +A K+F  +    +  W A+I      G    + +++  MR S +  +
Sbjct: 120 LVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLD 179

Query: 152 QFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFE 211
                 +++A     D+R G  +H +  K G+ S   V N++V MY +   ++   ++F+
Sbjct: 180 ACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFD 239

Query: 212 AIAH-QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVG 270
            +   +D VSWN++ S +       + LR+F +M      PN  TF+  L+AC   S + 
Sbjct: 240 RMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIK 299

Query: 271 FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
            G  +HA  +K S   N  V  +L+ MY + G + +A   F ++ + D  ++ ++++ + 
Sbjct: 300 QGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFV 359

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
           Q G    AL+ + +MR  G K +   + S +   +      +G  +H+ A+K G   D+ 
Sbjct: 360 QNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQ 419

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
           V  +LV MYAK  S+   + +F     +D  SW  +I G+ ++G   +ALE FR +  EG
Sbjct: 420 VGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEG 479

Query: 451 YVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTE 509
              D +    +L ACS + LI   K+ H   I+K  G++  +     ++D+ G  G    
Sbjct: 480 IDLDVMMISSILLACSGLKLISSVKEIHSYIIRK--GLSDLVLQNG-IVDVYGECGNVDY 536

Query: 510 IENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
                   +   + + W +++ +C  H  +      A + LEL   M+   V P  IS
Sbjct: 537 AARMFELIEFK-DVVSWTSMI-SCYVHNGL------ANEALELFHLMKETGVEPDSIS 586



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 91/166 (54%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A R+F+ +   +VVSW ++++ Y  +G   + + LF  MK+   +    SL ++L  
Sbjct: 534 VDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSA 593

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+   +K G+ +H   IR G  L+  L+ +LVDMY++CG  + +  VF  I++ D+V W
Sbjct: 594 AASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLW 653

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
            ++I      GC + A  +F  M + S+ P+     +++ A + +G
Sbjct: 654 TSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSG 699


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/597 (33%), Positives = 336/597 (56%), Gaps = 2/597 (0%)

Query: 4   AKRVFKSMPEL-NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           A+++F  MPE  +VVSWN++++ Y+ +G   + + LF  M+      + ++    L+   
Sbjct: 270 ARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACE 329

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           +S +IK G  +HA  ++    ++ F++ +L+ MY++ G    A  +FY + D D ++W +
Sbjct: 330 DSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNS 389

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +++   Q G   EA + ++ MR++  KP+   + S++ A+  +G+   G  IHA   K G
Sbjct: 390 MLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNG 449

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            +SD  VGN+LV MY +   + Y   +F+ +  +D VSW  + +      S  + L +F 
Sbjct: 450 LDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFR 509

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           ++ L+G   ++     IL ACS L  +   K++H++ I+  L  + V+   +VD+Y + G
Sbjct: 510 EVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGL-SDLVLQNGIVDVYGECG 568

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            ++ A   F+ +  KD+ ++T++I+ Y   G A  AL+ F  M+  G++ +  +L S L+
Sbjct: 569 NVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILS 628

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
             + ++ L  G+ +H   ++ G +L+  +++ LV MYA+CG+++ +  VF     +D   
Sbjct: 629 AAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVL 688

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           W  MI  Y  HG G  A++ FR M DE   PD I FV VL ACSH GL+ EG++   S+K
Sbjct: 689 WTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMK 748

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
             Y + P  +H+ C++D+LGRA    E   F+   ++ P A VW  LLGAC  H N EL 
Sbjct: 749 YEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELG 808

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           E  A+KLLE++P+   NYV  S++ A + RW D   VR  + + G+KK P CSWIEV
Sbjct: 809 EIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEV 865



 Score =  265 bits (678), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 164/569 (28%), Positives = 301/569 (52%), Gaps = 19/569 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F  MP   + +WNA++  Y  +G+    + L+  M+         +   +LK    
Sbjct: 169 AEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGL 228

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP-DVVAWGA 122
               + G  VH +AI+ G     F++ S+V MY+KC   + A ++F R+ +  DVV+W +
Sbjct: 229 LKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNS 288

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I+     G   EA ++F  M+++S+ PN +   + ++A  ++   + G  IHA + K  
Sbjct: 289 MISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSS 348

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           +  +  V NAL++MY   G++   + +F  +   D++SWN++ S F       + L+ ++
Sbjct: 349 YYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYH 408

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M   G KP++   I I+ A +   +   G Q+HA+ +K+ LD +  VG SLVDMY K  
Sbjct: 409 EMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFC 468

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            ++     FD + +KD+ ++T II  +AQ G    AL+ FR+++LEGI  +   ++S L 
Sbjct: 469 SMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILL 528

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            CS +  +++ + +HS  ++ G L D+ +   +V +Y +CG++D A  +F+    +D  S
Sbjct: 529 ACSGLKLISSVKEIHSYIIRKG-LSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVS 587

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSI 481
           W  MI  YV +GL  +ALE F +M + G  PD I+ V +LSA + +  +++GK+ H   I
Sbjct: 588 WTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLI 647

Query: 482 KKIYGITPTIKHFACMIDILGRAG---KFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           +K + +  ++   + ++D+  R G   K   + NFI    L    ++W +++ A   HG 
Sbjct: 648 RKGFVLEGSLA--STLVDMYARCGTLEKSRNVFNFIRNKDL----VLWTSMINAYGMHGC 701

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDIS 567
                      ++L  +ME   + P  I+
Sbjct: 702 -------GRAAIDLFRRMEDESIAPDHIA 723



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 148/538 (27%), Positives = 254/538 (47%), Gaps = 20/538 (3%)

Query: 39  FCSMKDM--EKKFSKFSL----STVLKGFANSGYIKAGQVVHAMAIRLGCALDK-FLSCS 91
           F S+ D+   +  S+FSL    S+VL+   +   +  GQ VHA  I      +  FLS  
Sbjct: 96  FQSLTDLFANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTR 155

Query: 92  LVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPN 151
           LV MY KCG   +A K+F  +    +  W A+I      G    + +++  MR S +  +
Sbjct: 156 LVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLD 215

Query: 152 QFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFE 211
                 +++A     D+RCG  +H +  K G+ S   V N++V MY +   ++   ++F+
Sbjct: 216 ACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFD 275

Query: 212 AIAH-QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVG 270
            +   +D VSWN++ S +       + LR+F +M      PN  TF+  L+AC   S + 
Sbjct: 276 RMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIK 335

Query: 271 FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
            G  +HA  +K S   N  V  +L+ MY + G + +A   F ++ + D  ++ ++++ + 
Sbjct: 336 QGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFV 395

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
           Q G    AL+ + +MR  G K +   + S +   +      NG  +H+ A+K G   D+ 
Sbjct: 396 QNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQ 455

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
           V  +LV MYAK  S+   + +F     +D  SW  +I G+ ++G   +ALE FR +  EG
Sbjct: 456 VGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEG 515

Query: 451 YVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTE 509
              D +    +L ACS + LI   K+ H   I+K  G++  +     ++D+ G  G    
Sbjct: 516 IDLDVMMISSILLACSGLKLISSVKEIHSYIIRK--GLSDLVLQNG-IVDVYGECGNVDY 572

Query: 510 IENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
                   +   + + W +++ +C  H  +      A + LEL   M+   V P  IS
Sbjct: 573 AARMFELIEFK-DVVSWTSMI-SCYVHNGL------ANEALELFHLMKETGVEPDSIS 622



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 91/166 (54%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A R+F+ +   +VVSW ++++ Y  +G   + + LF  MK+   +    SL ++L  
Sbjct: 570 VDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSA 629

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+   +K G+ +H   IR G  L+  L+ +LVDMY++CG  + +  VF  I++ D+V W
Sbjct: 630 AASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLW 689

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
            ++I      GC + A  +F  M + S+ P+     +++ A + +G
Sbjct: 690 TSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSG 735


>gi|449461477|ref|XP_004148468.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
 gi|449515698|ref|XP_004164885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
          Length = 837

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/601 (33%), Positives = 327/601 (54%), Gaps = 1/601 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+ VF  +     V+W A++ GY +SG  +  + LF  M +      K+ LS++L  
Sbjct: 193 IDKARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNA 252

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +  GY+K G+ +HA  +R    +D      L+D Y+KCG       +F R+   ++++W
Sbjct: 253 CSVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVKNIISW 312

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I    Q     EA ++   M     KP+++  +S++ +       + G  IH+ + K
Sbjct: 313 TTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDALQHGRQIHSYVIK 372

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              E D  V NAL+ MY +   +    RVF+ +     V +NA+   +         L +
Sbjct: 373 VCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIEGYSRQGYLCGALEV 432

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M LK   P+  TF+ +L   ++L  +   KQ+H   IK+    +    ++L+D+Y K
Sbjct: 433 FQEMRLKHVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYGFSLDKFTSSALIDVYSK 492

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
             C+ DA   F+   NKD+  + ++ + Y    ++E A K +  ++L   + NEFT A+ 
Sbjct: 493 CSCIRDARYVFEGTTNKDIVVWNSLFSGYNLQLKSEEAFKLYSDLQLSRERPNEFTFAAL 552

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
               S +A+L +G+  H+  +K G   D F++ ALV MYAKCGS+++AE +F  S  +DT
Sbjct: 553 TTAASILASLPHGQQFHNQVMKMGLESDPFITNALVDMYAKCGSVEEAEKIFSSSVWKDT 612

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
           A WN MI  Y +HG  E+AL  F  M+     P+ +TFV VLSACSH+G +E+G +H++S
Sbjct: 613 ACWNSMISMYAQHGKVEEALRMFETMVSNNINPNYVTFVSVLSACSHVGFVEDGLQHYNS 672

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + + YGI P I+H+A ++ +LGRAG+ TE   FI +  + P ALVW +LL AC   GN+E
Sbjct: 673 MAR-YGIEPGIEHYASVVTLLGRAGRLTEAREFIEKMTIRPAALVWRSLLSACRVFGNVE 731

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           L +  AE  + ++P    +YV  S+I A++G W D   +R  +   G+ KEP  SWIEV+
Sbjct: 732 LAKHAAEMAISIDPMDSGSYVMLSNIFASKGMWGDVKRLRLKMDVNGVVKEPGQSWIEVN 791

Query: 601 G 601
           G
Sbjct: 792 G 792



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 160/572 (27%), Positives = 292/572 (51%), Gaps = 16/572 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDM-EKKFSKFSLSTVLKGFA 62
           A  +F  MP  N+VSW+++++ Y + G  +K +  F   +     K +++ L+++++   
Sbjct: 94  AGTLFDKMPNRNLVSWSSVVSMYTQLGYNEKALLYFLEFQRTCVDKLNEYILASIIRACV 153

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
                + G  VH+  I+ G   D ++  SLV +Y+K G  D A  VF  +     V W A
Sbjct: 154 QRDGGEPGSQVHSYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTA 213

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           IIT   + G  + + ++FNLM ES+V P+++VL+S++ A +  G  + G+ IHA + +  
Sbjct: 214 IITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSE 273

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            + D    N L+  Y + GRV  G  +F+ +  ++ +SW  + + +       + + +  
Sbjct: 274 TKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVG 333

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M   G+KP+      +L +C S+  +  G+Q+H++ IK  L+ ++ V  +L+DMY K  
Sbjct: 334 EMFRMGWKPDEYACSSVLTSCGSVDALQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCN 393

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            L+DA   FD +    +  Y A+I  Y++ G    AL+ F++MRL+ +  +  T  S L 
Sbjct: 394 ALDDAKRVFDVVTCHSVVYYNAMIEGYSRQGYLCGALEVFQEMRLKHVSPSFLTFVSLLG 453

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
             + +  L   + +H + +K G  LD F S+AL+ +Y+KC  I DA  VF+G+  +D   
Sbjct: 454 LSAALLCLQLSKQIHGLIIKYGFSLDKFTSSALIDVYSKCSCIRDARYVFEGTTNKDIVV 513

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLD---EGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
           WN +  GY    L  K+ EAF++  D       P+E TF  + +A S +  +  G++  +
Sbjct: 514 WNSLFSGY---NLQLKSEEAFKLYSDLQLSRERPNEFTFAALTTAASILASLPHGQQFHN 570

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
            + K+ G+         ++D+  + G   E E   + +     A  W +++   + HG +
Sbjct: 571 QVMKM-GLESDPFITNALVDMYAKCGSVEEAEKIFSSSVWKDTA-CWNSMISMYAQHGKV 628

Query: 540 ELDEKDAEKLLE--LEPKMESNYV-FPSDISA 568
           E    +A ++ E  +   +  NYV F S +SA
Sbjct: 629 E----EALRMFETMVSNNINPNYVTFVSVLSA 656



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 137/506 (27%), Positives = 241/506 (47%), Gaps = 20/506 (3%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           VH   +  G   D FLS  L+  Y K G   +A  +F ++ + ++V+W ++++   Q G 
Sbjct: 62  VHCQVVLWGLQYDVFLSNLLLHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQLGY 121

Query: 133 CQEAAKIFNLMRESSV-KPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGN 191
            ++A   F   + + V K N+++L S++RA  +      G  +H+ + K GF  D  VG 
Sbjct: 122 NEKALLYFLEFQRTCVDKLNEYILASIIRACVQRDGGEPGSQVHSYVIKSGFGEDVYVGT 181

Query: 192 ALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKP 251
           +LV +Y ++G +     VF+ +  +  V+W A+ + +      +  L++F  M+     P
Sbjct: 182 SLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNVIP 241

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF 311
           +      IL ACS L  +  GKQ+HA+ ++     +      L+D Y K G ++     F
Sbjct: 242 DKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKALF 301

Query: 312 DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLA 371
           D L  K++ ++T +I  Y Q      A++   +M   G K +E+  +S L  C  V  L 
Sbjct: 302 DRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDALQ 361

Query: 372 NGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV 431
           +GR +HS  +K     D FV+ AL+ MY+KC ++DDA+ VF          +N MI GY 
Sbjct: 362 HGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIEGYS 421

Query: 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI 491
           + G    ALE F+ M  +   P  +TFV +L   + +  ++  K+    I K YG +   
Sbjct: 422 RQGYLCGALEVFQEMRLKHVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIK-YGFSLDK 480

Query: 492 KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551
              + +ID+  +     +   ++ E     + +VW +L        N++L  ++A KL  
Sbjct: 481 FTSSALIDVYSKCSCIRD-ARYVFEGTTNKDIVVWNSLFSGY----NLQLKSEEAFKLY- 534

Query: 552 LEPKMESNYVFPSDISATQGRWNDFS 577
                       SD+  ++ R N+F+
Sbjct: 535 ------------SDLQLSRERPNEFT 548



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKD 318
           +L A  S   + + +++H   +   L  +  +   L+  Y K G + DAG  FD + N++
Sbjct: 46  LLLAPVSNKSILYYRKVHCQVVLWGLQYDVFLSNLLLHSYFKIGSVFDAGTLFDKMPNRN 105

Query: 319 LFAYTAIITSYAQAGEAEMALKCFRKMRLEGI-KSNEFTLASCLNGCSPVATLANGRLLH 377
           L +++++++ Y Q G  E AL  F + +   + K NE+ LAS +  C        G  +H
Sbjct: 106 LVSWSSVVSMYTQLGYNEKALLYFLEFQRTCVDKLNEYILASIIRACVQRDGGEPGSQVH 165

Query: 378 SIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGE 437
           S  +K+G   D++V T+LV +YAK G ID A  VF G  L+   +W  +I GY K G  E
Sbjct: 166 SYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTKSGRSE 225

Query: 438 KALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            +L+ F +M++   +PD+     +L+ACS +G ++ GK+
Sbjct: 226 VSLQLFNLMMESNVIPDKYVLSSILNACSVLGYLKGGKQ 264



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 93/237 (39%), Gaps = 41/237 (17%)

Query: 374 RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKH 433
           R +H   V  G   D+F+S  L+  Y K GS+ DA  +F     R+  SW+ ++  Y + 
Sbjct: 60  RKVHCQVVLWGLQYDVFLSNLLLHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQL 119

Query: 434 GLGEKALEAF----RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK------ 483
           G  EKAL  F    R  +D+    +E     ++ AC      E G +  S + K      
Sbjct: 120 GYNEKALLYFLEFQRTCVDK---LNEYILASIIRACVQRDGGEPGSQVHSYVIKSGFGED 176

Query: 484 ---------IYGITPTIKHFACMIDIL------------------GRAGKFTEIENFITE 516
                    +Y     I     + D L                  GR+    ++ N + E
Sbjct: 177 VYVGTSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMME 236

Query: 517 TKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKME-SNYVFPSDISATQGR 572
           + + P+  V  ++L ACS  G ++  ++    +L  E KM+ S Y    D     GR
Sbjct: 237 SNVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGR 293


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/604 (33%), Positives = 332/604 (54%), Gaps = 3/604 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A R+F  M + N  SW  L+ G AE+G        FC M+       +F+ S +L+ 
Sbjct: 121 IDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQI 180

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 I+ G +VHA  +  G     F+S +L++MY+K    +++ KVF  + + +VV+W
Sbjct: 181 CIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSW 240

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+IT         +A  +F  M    V P+      + +A     D    + +     +
Sbjct: 241 NAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALE 300

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEA--IAHQDSVSWNALFSRFQDYESPDQGL 238
            G +S+TLVG AL+ M  + G +     +F +  I  + +  WNA+ S +      ++ L
Sbjct: 301 LGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKAL 360

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGTSLVDM 297
            +F +M       +  T+  +  A ++L  +  GK++HA  IK  L+ N+V +  ++ + 
Sbjct: 361 ELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANA 420

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K G LED    F+ + ++DL ++T+++T+Y+Q  E + A++ F  MR EGI  N+FT 
Sbjct: 421 YAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTF 480

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           +S L  C+ +  L  G+ +H I  K G  +D  + +ALV MYAKCG + DA+ VF   + 
Sbjct: 481 SSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISN 540

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
            DT SW  +I G+ +HG+ + AL+ FR M+  G  P+ +TF+ VL ACSH GL+EEG ++
Sbjct: 541 ADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQY 600

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F  +KK YG+ P ++H+AC++D+L R G   +   FI+   + PN +VW+ LLGAC  HG
Sbjct: 601 FKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHG 660

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           N+EL E  A+K+L  + +  + YV  S+     G + D   +R ++  QG+KKEP CSWI
Sbjct: 661 NVELGELAAQKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHVMKEQGVKKEPGCSWI 720

Query: 598 EVDG 601
            V+G
Sbjct: 721 SVNG 724



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 156/570 (27%), Positives = 269/570 (47%), Gaps = 56/570 (9%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKF-------LSCSLVDMYSKCGLADNAL 106
           L  +L+   ++ ++K  + VH   ++      KF       L   +   YSKC   D A 
Sbjct: 71  LVDLLRDCVDARFLKQAKTVHGFLLK-----SKFSNHHSLVLLNHVAHAYSKCSDIDAAC 125

Query: 107 KVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
           ++F ++   +  +W  +I  L + G   +  + F  M+   + P+QF  + +++      
Sbjct: 126 RLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLD 185

Query: 167 DQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS 226
               G  +HA I   GF S T V  AL++MY +   +    +VF  +   + VSWNA+ +
Sbjct: 186 SIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMIT 245

Query: 227 RFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDG 286
            F   +       +F +M+ +G  P+  TFI + KA   L DV   K++  + ++  +D 
Sbjct: 246 GFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDS 305

Query: 287 NHVVGTSLVDMYDKSGCLEDAGVAFDS--LANKDLFAYTAIITSYAQAGEAEMALKCFRK 344
           N +VGT+L+DM  K G L++A   F+S  +  +    + A+I+ Y ++G  E AL+ F K
Sbjct: 306 NTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAK 365

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF-VSTALVAMYAKCG 403
           M    I  + +T  S  N  + +  L+ G+ +H+ A+K+G  ++   +S A+   YAKCG
Sbjct: 366 MCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCG 425

Query: 404 SIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           S++D   VF     RD  SW  ++  Y +    +KA+E F  M  EG  P++ TF  VL 
Sbjct: 426 SLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLV 485

Query: 464 ACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDI------LGRAGK-FTEIENFIT- 515
           +C+++ L+E G++    I K+ G+       + ++D+      LG A K F  I N  T 
Sbjct: 486 SCANLCLLEYGQQVHGIICKV-GLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTV 544

Query: 516 --------------------------ETKLTPNALVWENLLGACSWHGNIELDEKDAEKL 549
                                     +  + PNA+ +  +L ACS HG +  +     KL
Sbjct: 545 SWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACS-HGGLVEEGLQYFKL 603

Query: 550 LE----LEPKMESNYVFPSDISATQGRWND 575
           ++    L P+ME +Y    D+ +  G  ND
Sbjct: 604 MKKTYGLVPEME-HYACIVDLLSRVGHLND 632


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/598 (33%), Positives = 333/598 (55%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
            LA RVF  M   + V++N L++G+A+ G G + + +F  M+         +++++L   
Sbjct: 195 RLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAAC 254

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           +  G ++ G+ +H+  ++ G +LD  +  SL+D+Y K G  + AL++F      +VV W 
Sbjct: 255 SAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWN 314

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            ++    Q     ++  IF  M  + V+PN+F    ++R  T TG+   GE IH++  K 
Sbjct: 315 LMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKN 374

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           GF+SD  V   L+ MY + G +    R+ + I  +D VSW ++ + +  +E   + L  F
Sbjct: 375 GFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETF 434

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M   G  P+       + AC+ +  V  G Q+HA         +  +   LV +Y + 
Sbjct: 435 KEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARC 494

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G  ++A  +F+++ +K+   +  +I+ +AQ+G  E ALK F KM   G K N FT  S +
Sbjct: 495 GISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSI 554

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           +  + +A +  G+ +H+  +KTG+  +  +S AL+++Y KCGSI+DA+  F     R+  
Sbjct: 555 SASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEV 614

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SWN +I    +HG G +AL+ F  M  +G  P ++TFV VL+ACSH+GL+EEG  +F S+
Sbjct: 615 SWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSM 674

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
              +GI P   H+AC++DILGRAG+    + F+ E  +  +++VW  LL AC  H N+E+
Sbjct: 675 SNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVHKNLEI 734

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            E  A+ LLELEP   ++YV  S+  A  G+W     +R ++  +G++KEP  SWIEV
Sbjct: 735 GEFAAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIEV 792



 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 162/592 (27%), Positives = 304/592 (51%), Gaps = 19/592 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+RVF+ +   + VSW A+L+GYA++G G++ + L+  M       + + LS++L     
Sbjct: 96  ARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTK 155

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +   + G+++H    + G   + F+  +L+ +Y +C     A +VF  +   D V +  +
Sbjct: 156 TELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTL 215

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   Q G    A  IF+ M+ S + P+   + SL+ A +  GD R G+ +H+ + K G 
Sbjct: 216 ISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGM 275

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D ++  +L+ +Y+++G +    ++F++    + V WN +   +   +   +   IFY+
Sbjct: 276 SLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYR 335

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           ML  G +PN  T+  +L+ C+   ++G G+Q+H+ TIK+    +  V   L+DMY K G 
Sbjct: 336 MLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGW 395

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L+ A    D +  KD+ ++T++I  Y Q    + AL+ F++M+  GI  +   LAS ++ 
Sbjct: 396 LDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISA 455

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +  +  G  +H+    +G+  D+ +   LV +YA+CG   +A + F+    ++  +W
Sbjct: 456 CAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITW 515

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I G+ + GL E+AL+ F  M   G   +  TFV  +SA +++  I++GK+  + + K
Sbjct: 516 NGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIK 575

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIE-NFITETKLTPNALVWENLLGACSWHGNIELD 542
             G T   +    +I + G+ G   + + +F   TK   N + W  ++  CS HG     
Sbjct: 576 T-GYTSETEISNALISLYGKCGSIEDAKMDFFEMTK--RNEVSWNTIITCCSQHGR---- 628

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSC 594
                + L+L  +M+   + PSD++        F GV    S  G+ +E  C
Sbjct: 629 ---GLEALDLFDQMKQQGLKPSDVT--------FVGVLTACSHVGLVEEGLC 669



 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 155/520 (29%), Positives = 261/520 (50%), Gaps = 6/520 (1%)

Query: 11  MPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY-IKA 69
           M      S+N  L G+    D +K++ LF +             +  L+    SG     
Sbjct: 1   MTPRGAASFNRPLAGFLAPDDPEKLLPLFAAKCRQYMVLGAVDFACALRACRGSGRRWPL 60

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
              +HA AI  G +  + +   L+D+Y+K G    A +VF  +   D V+W A+++   Q
Sbjct: 61  VPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQ 120

Query: 130 QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
            G  +EA +++  M  S V P  +VL+S++ A T+T   + G  IH  + K GF S+T V
Sbjct: 121 NGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFV 180

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
           GNAL+S+Y+         RVF  + + DSV++N L S        D+ L IF +M L G 
Sbjct: 181 GNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGL 240

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
            P+  T   +L ACS++ D+  GKQLH++ +K  +  ++++  SL+D+Y KSG +E+A  
Sbjct: 241 SPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQ 300

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369
            FDS    ++  +  ++ +Y Q  +   +   F +M   G++ N+FT    L  C+    
Sbjct: 301 IFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGE 360

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           +  G  +HS+ +K G   DM+VS  L+ MY+K G +D A+ +      +D  SW  MI G
Sbjct: 361 IGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAG 420

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITP 489
           YV+H   ++ALE F+ M   G  PD I     +SAC+ +  + +G +  + +  + G + 
Sbjct: 421 YVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARV-YVSGYSA 479

Query: 490 TIKHFACMIDILGRAG----KFTEIENFITETKLTPNALV 525
            +  +  ++ +  R G     F+  E    +  +T N L+
Sbjct: 480 DVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLI 519



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 115/373 (30%), Positives = 190/373 (50%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A ++F S    NVV WN +L  Y +  D  K   +F  M     + +KF+   +L+ 
Sbjct: 295 IEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRT 354

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             ++G I  G+ +H++ I+ G   D ++S  L+DMYSK G  D A ++   I++ DVV+W
Sbjct: 355 CTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSW 414

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I    Q   C+EA + F  M+   + P+   L S + A         G  IHA +  
Sbjct: 415 TSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYV 474

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G+ +D  + N LV +Y   G        FEAI H++ ++WN L S F      ++ L++
Sbjct: 475 SGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKV 534

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M   G K N+ TF+  + A ++L+D+  GKQ+HA  IK        +  +L+ +Y K
Sbjct: 535 FMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGK 594

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +EDA + F  +  ++  ++  IIT  +Q G    AL  F +M+ +G+K ++ T    
Sbjct: 595 CGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGV 654

Query: 361 LNGCSPVATLANG 373
           L  CS V  +  G
Sbjct: 655 LTACSHVGLVEEG 667


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 214/606 (35%), Positives = 332/606 (54%), Gaps = 10/606 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMK---DMEKKFSKFSLSTVLKG 60
           AK +F S+ + N V+ N L+ G       ++ + +F   +   D+        LS + + 
Sbjct: 329 AKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVGTRNTVDVNADTYVVLLSALAEY 388

Query: 61  FANSGYIKAGQVVHAMAIRLGCA-LDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             +   ++ G+VVH   +R G   L   +S  LV+MY+KCG  ++A K+F  ++  D ++
Sbjct: 389 SISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLMEATDRIS 448

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  II+ LDQ G C+EA   ++LMR+S + P+ F L S + +         G+ +H    
Sbjct: 449 WNTIISALDQNGNCEEAVMHYSLMRQSCISPSNFALISSLSSCAGLKLLTAGQQVHCDAV 508

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP-DQGL 238
           K+G + DT V N LV MY E G +S   +VF ++A  D VSWN +       ++P  + +
Sbjct: 509 KWGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSMAEHDEVSWNTMMGVMASSQTPISEIV 568

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           ++F  M+  G  PN  TFI +L A S LS +  GKQ+HA  +KH +  ++VV  +L+  Y
Sbjct: 569 KVFNNMMRGGLIPNKVTFINLLAALSPLSVLELGKQVHAAVMKHGVMEDNVVDNALISCY 628

Query: 299 DKSGCLEDAGVAFDSLANK-DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
            KSG +      F +++++ D  ++ ++I+ Y   G  + A+ C   M   G   +  T 
Sbjct: 629 AKSGDMGSCEHLFTNMSDRRDAISWNSMISGYIYNGNLQEAMDCVWLMIHSGQIMDCCTF 688

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           +  LN C+ VA L  G  LH+  +++    D+ V +ALV MY+KCG +D A  +F     
Sbjct: 689 SIILNACASVAALERGMELHAFGIRSHLESDVVVESALVDMYSKCGRVDYASKLFNSMTQ 748

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           R+  SWN MI GY +HGLG KA+E F  ML     PD +TFV VLSACSH GL+E G ++
Sbjct: 749 RNEFSWNSMISGYARHGLGRKAIEIFEEMLRSRESPDHVTFVSVLSACSHAGLVERGLEY 808

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH- 536
           F  +   +GI P I+H++C+ID+LGRAGK  +I+ +I    + PNAL+W  +L AC    
Sbjct: 809 FEMMPD-HGILPQIEHYSCVIDLLGRAGKIDKIKEYIQRMPIEPNALIWRTVLVACRQSK 867

Query: 537 --GNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSC 594
              NI+L  + +  LLE+EP+   NYV  S+  A  G W D +  R  +     KKE   
Sbjct: 868 DGSNIDLGREASRVLLEIEPQNPVNYVLASNFHAATGMWEDTAKARTAMRQATEKKEAGR 927

Query: 595 SWIEVD 600
           SW+ ++
Sbjct: 928 SWVTLN 933



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 159/587 (27%), Positives = 282/587 (48%), Gaps = 34/587 (5%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           LA+RVF   P  ++++WNAL++ YA+ GD      LF   KDM++  S+  L      F 
Sbjct: 222 LAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLF---KDMQRGDSRIQLRPTEHTFG 278

Query: 63  N--------SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
           +        SG       V    ++ GC+ D ++  +LV  +++ GL D A  +F  +K 
Sbjct: 279 SLITAASLSSGSSAVLDQVLVWVLKSGCSSDLYVGSALVSAFARHGLTDEAKDIFLSLKQ 338

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRES-SVKPNQFV--LTSLVRATTETGDQRCG 171
            + V    +I  L +Q   +EA KIF   R +  V  + +V  L++L   +      R G
Sbjct: 339 KNAVTLNGLIVGLVRQDFSEEAVKIFVGTRNTVDVNADTYVVLLSALAEYSISEEGLRIG 398

Query: 172 ESIHAVICKYGFESDTL-VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
             +H  + + G     + V N LV+MY + G +   S++F+ +   D +SWN + S    
Sbjct: 399 RVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLMEATDRISWNTIISALDQ 458

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
             + ++ +  +  M      P+    I  L +C+ L  +  G+Q+H   +K  LD +  V
Sbjct: 459 NGNCEEAVMHYSLMRQSCISPSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSV 518

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI--ITSYAQAGEAEMALKCFRKMRLE 348
              LV MY + G + D    F+S+A  D  ++  +  + + +Q   +E+ +K F  M   
Sbjct: 519 SNVLVKMYGECGAMSDYWKVFNSMAEHDEVSWNTMMGVMASSQTPISEI-VKVFNNMMRG 577

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
           G+  N+ T  + L   SP++ L  G+ +H+  +K G + D  V  AL++ YAK G +   
Sbjct: 578 GLIPNKVTFINLLAALSPLSVLELGKQVHAAVMKHGVMEDNVVDNALISCYAKSGDMGSC 637

Query: 409 EAVFKG-SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
           E +F   S  RD  SWN MI GY+ +G  ++A++   +M+  G + D  TF ++L+AC+ 
Sbjct: 638 EHLFTNMSDRRDAISWNSMISGYIYNGNLQEAMDCVWLMIHSGQIMDCCTFSIILNACAS 697

Query: 468 MGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKF---TEIENFITETKLTPNA 523
           +  +E G + H   I+        ++  + ++D+  + G+    +++ N +T+     N 
Sbjct: 698 VAALERGMELHAFGIRSHLESDVVVE--SALVDMYSKCGRVDYASKLFNSMTQR----NE 751

Query: 524 LVWENLLGACSWHGNIELDEKDAEKLLELEPKMES--NYVFPSDISA 568
             W +++   + HG   L  K  E   E+    ES  +  F S +SA
Sbjct: 752 FSWNSMISGYARHG---LGRKAIEIFEEMLRSRESPDHVTFVSVLSA 795



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 146/555 (26%), Positives = 267/555 (48%), Gaps = 20/555 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEK--KFSKFSLSTVLKG 60
           A +VF  MPE N VSW  L++GY   G  ++   +F +M ++++   + + F+  T+L+ 
Sbjct: 115 ASQVFDEMPERNAVSWTCLVSGYVLHGIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRA 174

Query: 61  FANSGYIKAGQV--VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNAL--KVFYRIKDPD 116
             + G  + G    VH +  +   A +  +  +L+ MY  C +    L  +VF      D
Sbjct: 175 CQDGGPDRLGFAVQVHGLVSKTEYASNTTVCNALISMYGSCTVGPPILAQRVFDGTPIRD 234

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFNLMRES----SVKPNQFVLTSLV-RATTETGDQRCG 171
           ++ W A+++   ++G       +F  M+       ++P +    SL+  A+  +G     
Sbjct: 235 LITWNALMSVYAKKGDVASTFTLFKDMQRGDSRIQLRPTEHTFGSLITAASLSSGSSAVL 294

Query: 172 ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY 231
           + +   + K G  SD  VG+ALVS +  +G       +F ++  +++V+ N L       
Sbjct: 295 DQVLVWVLKSGCSSDLYVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQ 354

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACS--SLSDVGF--GKQLHAHTIKHSL-DG 286
           +  ++ ++IF          N  T++V+L A +  S+S+ G   G+ +H H ++  L D 
Sbjct: 355 DFSEEAVKIFVGT-RNTVDVNADTYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTDL 413

Query: 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR 346
              V   LV+MY K G +E A   F  +   D  ++  II++  Q G  E A+  +  MR
Sbjct: 414 KIAVSNGLVNMYAKCGAIESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMR 473

Query: 347 LEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSID 406
              I  + F L S L+ C+ +  L  G+ +H  AVK G  LD  VS  LV MY +CG++ 
Sbjct: 474 QSCISPSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMS 533

Query: 407 DAEAVFKGSALRDTASWNMMIGGYVKHGLG-EKALEAFRMMLDEGYVPDEITFVVVLSAC 465
           D   VF   A  D  SWN M+G          + ++ F  M+  G +P+++TF+ +L+A 
Sbjct: 534 DYWKVFNSMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAAL 593

Query: 466 SHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV 525
           S + ++E GK+  +++ K +G+         +I    ++G     E+  T      +A+ 
Sbjct: 594 SPLSVLELGKQVHAAVMK-HGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAIS 652

Query: 526 WENLLGACSWHGNIE 540
           W +++    ++GN++
Sbjct: 653 WNSMISGYIYNGNLQ 667



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 112/408 (27%), Positives = 209/408 (51%), Gaps = 2/408 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A ++F+ M   + +SWN +++   ++G+ ++ +  +  M+      S F+L + L  
Sbjct: 431 IESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQSCISPSNFALISSLSS 490

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    + AGQ VH  A++ G  LD  +S  LV MY +CG   +  KVF  + + D V+W
Sbjct: 491 CAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSMAEHDEVSW 550

Query: 121 GAIITCL-DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
             ++  +   Q    E  K+FN M    + PN+    +L+ A +       G+ +HA + 
Sbjct: 551 NTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAALSPLSVLELGKQVHAAVM 610

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALFSRFQDYESPDQGL 238
           K+G   D +V NAL+S Y ++G +     +F  ++  +D++SWN++ S +    +  + +
Sbjct: 611 KHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMISGYIYNGNLQEAM 670

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
              + M+  G   + CTF +IL AC+S++ +  G +LHA  I+  L+ + VV ++LVDMY
Sbjct: 671 DCVWLMIHSGQIMDCCTFSIILNACASVAALERGMELHAFGIRSHLESDVVVESALVDMY 730

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G ++ A   F+S+  ++ F++ ++I+ YA+ G    A++ F +M       +  T  
Sbjct: 731 SKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAIEIFEEMLRSRESPDHVTFV 790

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSID 406
           S L+ CS    +  G     +    G L  +   + ++ +  + G ID
Sbjct: 791 SVLSACSHAGLVERGLEYFEMMPDHGILPQIEHYSCVIDLLGRAGKID 838



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 117/437 (26%), Positives = 200/437 (45%), Gaps = 37/437 (8%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           +H   I+ G   D FL   LV+ Y+K      A +VF  + + + V+W  +++     G 
Sbjct: 83  LHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLHGI 142

Query: 133 CQEAAKIFN-LMRE--SSVKPNQFVLTSLVRATTETGDQRCG--ESIHAVICKYGFESDT 187
            +EA ++F  ++RE  +  +P  F   +L+RA  + G  R G    +H ++ K  + S+T
Sbjct: 143 AEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSKTEYASNT 202

Query: 188 LVGNALVSMY--MENGRVSYGSRVFEAIAHQDSVSWNAL-------------FSRFQDYE 232
            V NAL+SMY     G      RVF+    +D ++WNAL             F+ F+D +
Sbjct: 203 TVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFKDMQ 262

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTF-IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
             D  +++         +P   TF  +I  A  S        Q+    +K     +  VG
Sbjct: 263 RGDSRIQL---------RPTEHTFGSLITAASLSSGSSAVLDQVLVWVLKSGCSSDLYVG 313

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
           ++LV  + + G  ++A   F SL  K+      +I    +   +E A+K F   R   + 
Sbjct: 314 SALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVGTR-NTVD 372

Query: 352 SNEFTLASCLNGCSPVAT----LANGRLLHSIAVKTGHL-LDMFVSTALVAMYAKCGSID 406
            N  T    L+  +  +     L  GR++H   ++TG   L + VS  LV MYAKCG+I+
Sbjct: 373 VNADTYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIE 432

Query: 407 DAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
            A  +F+     D  SWN +I    ++G  E+A+  + +M      P     +  LS+C+
Sbjct: 433 SASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQSCISPSNFALISSLSSCA 492

Query: 467 HMGLIEEGKK-HFSSIK 482
            + L+  G++ H  ++K
Sbjct: 493 GLKLLTAGQQVHCDAVK 509



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 159/329 (48%), Gaps = 25/329 (7%)

Query: 166 GDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALF 225
           GD    E++H  + K G   D  + N LV+ Y +  R++  S+VF+ +  +++VSW  L 
Sbjct: 75  GDANSPENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLV 134

Query: 226 SRFQDYESPDQGLRIFYQMLLK---GFKPNMCTFIVILKACSS--LSDVGFGKQLHAHTI 280
           S +  +   ++  R+F  ML +   G +P   TF  +L+AC       +GF  Q+H    
Sbjct: 135 SGYVLHGIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVS 194

Query: 281 KHSLDGNHVVGTSLVDMYDKS--GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMA 338
           K     N  V  +L+ MY     G    A   FD    +DL  + A+++ YA+ G+    
Sbjct: 195 KTEYASNTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVAST 254

Query: 339 LKCFRKM-----RLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAV---KTGHLLDMF 390
              F+ M     R++ ++  E T  S +   +   +  +  +L  + V   K+G   D++
Sbjct: 255 FTLFKDMQRGDSRIQ-LRPTEHTFGSLIT--AASLSSGSSAVLDQVLVWVLKSGCSSDLY 311

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF---RMML 447
           V +ALV+ +A+ G  D+A+ +F     ++  + N +I G V+    E+A++ F   R  +
Sbjct: 312 VGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVGTRNTV 371

Query: 448 DEGYVPDEITFVVVLSACSHMGLIEEGKK 476
           D     +  T+VV+LSA +   + EEG +
Sbjct: 372 D----VNADTYVVLLSALAEYSISEEGLR 396


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/608 (36%), Positives = 329/608 (54%), Gaps = 11/608 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AK +F+ M   NVVS N L+ G      G++ + LF  MKD   + +  S   +L  F  
Sbjct: 338 AKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKD-SVELNPNSYMIILTAFPE 396

Query: 64  SGYI----KAGQVVHAMAIRLGCALDKF-LSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
              +    + G  VHA  IR G    +  +   L++MY+KCG  ++A  VF  + + D V
Sbjct: 397 FHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSV 456

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            W ++IT LDQ     EA K F  MR + + P+ F + S + +    G    GE +H   
Sbjct: 457 TWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEG 516

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE-SPDQG 237
            K G + D  V NAL+++Y E G V    + F  +   D VSWN+L     D E S  + 
Sbjct: 517 LKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADSEPSMLEA 576

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           +  F  M+  G+ PN  TFI IL A SSLS    GKQ+HA  +K ++  +  +  +L+  
Sbjct: 577 VESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIENALLAC 636

Query: 298 YDKSGCLEDAGVAFDSLANK-DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           Y K G +      F  ++++ D  ++ ++I+ Y        A+     M  +G + + FT
Sbjct: 637 YGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQKGQRLDGFT 696

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
            A+ L+ C+ VATL  G  +H  +V+     D+ + +ALV MYAKCG ID A   F+   
Sbjct: 697 FATVLSACATVATLERGMEVHGCSVRACLESDIVIGSALVDMYAKCGRIDYASRFFEMMP 756

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            R+  SWN MI GY +HG G K+L+ F  M  +G +PD +TFV VLSACSH GL+ EG  
Sbjct: 757 ARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFS 816

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
           HF S+ +IYG+ P ++HF+CM+D+LGR G+  ++E+F+ +  + PN L+W  +LGAC   
Sbjct: 817 HFDSMSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQMPVKPNVLIWRTVLGACCRA 876

Query: 537 G--NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSC 594
              N  L  + AE LLE+EP    NY+  S++ A+ G+W+D +  R  +    +KKE  C
Sbjct: 877 NGRNTALGRRAAEMLLEMEPTNAVNYILLSNMYASGGKWDDVAKTRVAMRKAFVKKEAGC 936

Query: 595 SWIEV-DG 601
           SW+ + DG
Sbjct: 937 SWVTMKDG 944



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 145/543 (26%), Positives = 265/543 (48%), Gaps = 19/543 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
            ++VF  MP  N+VSW+ L++GY  +    +   LF  M       + ++  +V++    
Sbjct: 127 GRKVFDEMPLRNLVSWSCLISGYTRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQE 186

Query: 64  SGY--IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKC-GLADNALKVFYRIKDPDVVAW 120
            G   +K G  +H +  +     D   S  L+ MY    G+ D A + F  I   ++V+ 
Sbjct: 187 CGEYGLKFGMQIHGLMSKTQYVNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSL 246

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRES----SVKPNQFVLTSLVRATTETGDQRCG--ESI 174
            ++I+   Q+G    A  IF+ M++      +KPN++   SL+ AT    +      E +
Sbjct: 247 NSMISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQL 306

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
              + K GF  D  VG+ALVS + + G + Y   +F+ +++++ VS N L       +  
Sbjct: 307 LTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRG 366

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGK----QLHAHTIKHS-LDGNHV 289
           ++ + +F +M     + N  ++++IL A      +  GK    ++HA  I+   L+    
Sbjct: 367 EEAVELFMEM-KDSVELNPNSYMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIA 425

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           +G  L++MY K G + DA V F  + NKD   + ++IT   Q  +   A+K F++MR   
Sbjct: 426 IGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTE 485

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           +  + FT+ S L+ C+ +  ++ G  LH   +K G  LD+ VS AL+A+Y +CG + + +
Sbjct: 486 LYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQ 545

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGE-KALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
             F      D  SWN +IG          +A+E+F +M+  G+ P+ +TF+ +L+A S +
Sbjct: 546 KAFSLMLDYDHVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSL 605

Query: 469 GLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWE 527
            L E GK+ H   +K+       I++   ++   G+ G     EN  +      + + W 
Sbjct: 606 SLHELGKQIHALVLKRNVAADTAIEN--ALLACYGKCGDMGYCENIFSRMSDRQDEVSWN 663

Query: 528 NLL 530
           +++
Sbjct: 664 SMI 666



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 152/605 (25%), Positives = 289/605 (47%), Gaps = 33/605 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKD-------MEKKFSKFS 53
           ++ A+R F S+   N+VS N++++ Y + GD      +F +M+           +++  S
Sbjct: 228 VDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEYTFGS 287

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
           L +     ANSG +   Q++  +  + G   D ++  +LV  ++K G    A  +F ++ 
Sbjct: 288 LISATCSLANSGLVLLEQLLTRVE-KSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMS 346

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRES-SVKPNQF--VLTSLVRATTETGDQRC 170
             +VV+   +I  L +Q   +EA ++F  M++S  + PN +  +LT+          +R 
Sbjct: 347 YRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPNSYMIILTAFPEFHVLENGKRK 406

Query: 171 GESIHAVICKYG-FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
           G  +HA + + G   +   +GN L++MY + G ++    VF  + ++DSV+WN++ +   
Sbjct: 407 GSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLD 466

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
             +   + ++ F +M      P+  T I  L +C+SL  +  G+QLH   +K  LD +  
Sbjct: 467 QNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDLDVS 526

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEM-ALKCFRKMRLE 348
           V  +L+ +Y + G +++   AF  + + D  ++ ++I + A +  + + A++ F  M   
Sbjct: 527 VSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADSEPSMLEAVESFLVMMRA 586

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
           G   N  T  + L   S ++    G+ +H++ +K     D  +  AL+A Y KCG +   
Sbjct: 587 GWDPNRVTFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIENALLACYGKCGDMGYC 646

Query: 409 EAVF-KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
           E +F + S  +D  SWN MI GY+ + L  KA++    M+ +G   D  TF  VLSAC+ 
Sbjct: 647 ENIFSRMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQKGQRLDGFTFATVLSACAT 706

Query: 468 MGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVW 526
           +  +E G + H  S++    +   I   + ++D+  + G+      F  E     N   W
Sbjct: 707 VATLERGMEVHGCSVRAC--LESDIVIGSALVDMYAKCGRIDYASRFF-EMMPARNLYSW 763

Query: 527 ENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQ 586
            +++   + HG+         K L+L  +M+     P  ++        F GV +  S  
Sbjct: 764 NSMISGYARHGH-------GTKSLDLFAQMKLQGPLPDHVT--------FVGVLSACSHA 808

Query: 587 GIKKE 591
           G+  E
Sbjct: 809 GLVNE 813



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 123/480 (25%), Positives = 226/480 (47%), Gaps = 19/480 (3%)

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127
           K  + +H    + G   D FL  +L+++Y++ G   +  KVF  +   ++V+W  +I+  
Sbjct: 90  KDAEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGY 149

Query: 128 DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ--RCGESIHAVICKYGFES 185
            +     EA ++F  M      PN +   S++RA  E G+   + G  IH ++ K  + +
Sbjct: 150 TRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVN 209

Query: 186 DTLVGNALVSMYMEN-GRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
           D    N L+SMY    G V Y  R F++I  ++ VS N++ S +           IF  M
Sbjct: 210 DVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTM 269

Query: 245 ----LLKGFKPNMCTFIVILKACSSLSDVGFG--KQLHAHTIKHSLDGNHVVGTSLVDMY 298
               +  G KPN  TF  ++ A  SL++ G    +QL     K     +  VG++LV  +
Sbjct: 270 QKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGF 329

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K+G +  A   F  ++ +++ +   +I    +    E A++ F +M+ + ++ N  +  
Sbjct: 330 AKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMK-DSVELNPNSYM 388

Query: 359 SCLNGCSPVATLANGRL----LHSIAVKTGHL-LDMFVSTALVAMYAKCGSIDDAEAVFK 413
             L        L NG+     +H+  +++G L   + +   L+ MYAKCG+I+DA  VF+
Sbjct: 389 IILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFR 448

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
               +D+ +WN MI G  ++    +A++ F+ M      P   T +  LS+C+ +G I  
Sbjct: 449 LMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISV 508

Query: 474 GKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
           G++ H   +K   G+   +     ++ + G  G   E +   +   L  + + W +L+GA
Sbjct: 509 GEQLHCEGLK--LGLDLDVSVSNALLALYGECGYVKECQKAFS-LMLDYDHVSWNSLIGA 565



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 104/359 (28%), Positives = 182/359 (50%), Gaps = 20/359 (5%)

Query: 139 IFNLMRESSVKPNQFVLTSLVRATTETGDQRCG----ESIHAVICKYGFESDTLVGNALV 194
           + +L + S +  N       + +  +     CG    E +H  + K GF +D  + N L+
Sbjct: 56  LVDLYKSSQLHHNPVQHDEKIESLAQRYRYSCGSKDAEELHLQLFKNGFVNDLFLCNTLI 115

Query: 195 SMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMC 254
           ++Y   G +  G +VF+ +  ++ VSW+ L S +     P++   +F +M+  GF PN  
Sbjct: 116 NIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNEACELFRKMVSDGFMPNHY 175

Query: 255 TFIVILKACSSLSDVG--FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS-GCLEDAGVAF 311
            F  +++AC    + G  FG Q+H    K     +      L+ MY  + G ++ A  AF
Sbjct: 176 AFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLISMYGNALGMVDYARRAF 235

Query: 312 DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE----GIKSNEFTLASCLNGCSPV 367
           DS+  ++L +  ++I+ Y Q G+A  A   F  M+ E    G+K NE+T  S +   S  
Sbjct: 236 DSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEYTFGSLI---SAT 292

Query: 368 ATLANGRL-----LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            +LAN  L     L +   K+G L D++V +ALV+ +AK GSI  A+ +F+  + R+  S
Sbjct: 293 CSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVS 352

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
            N +I G V+   GE+A+E F  M D   + +  +++++L+A     ++E GK+  S +
Sbjct: 353 LNGLIIGLVRQKRGEEAVELFMEMKDSVEL-NPNSYMIILTAFPEFHVLENGKRKGSEV 410



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 19/155 (12%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A R F+ MP  N+ SWN++++GYA  G G K + LF  MK         +   VL  
Sbjct: 745 IDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSA 804

Query: 61  FANSGYIKAG-------QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
            +++G +  G         ++ +A R+     +  SC +VD+  + G  +       ++ 
Sbjct: 805 CSHAGLVNEGFSHFDSMSEIYGLAPRM-----EHFSC-MVDLLGRVGELNKMEDFLNQMP 858

Query: 114 -DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESS 147
             P+V+ W  ++       CC+   +   L R ++
Sbjct: 859 VKPNVLIWRTVLG-----ACCRANGRNTALGRRAA 888


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/599 (32%), Positives = 336/599 (56%), Gaps = 2/599 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A++VF+ MP  +VVSWN+L++GY  +G   + + ++   +++      +++S+VL+ 
Sbjct: 166 LDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRA 225

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
               G ++ G ++H +  ++G   D  ++  L+ MY K     +  ++F ++   D V+W
Sbjct: 226 CGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSW 285

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I    Q G  +E+ K+F  M  +  KP+   +TS+++A    GD   G+ +H  +  
Sbjct: 286 NTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMIT 344

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G+E DT   N L++MY + G +     VF  +  +DSVSWN++ + +    S D+ +++
Sbjct: 345 SGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKL 404

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M+    KP+  T++++L   + L D+  GK+LH    K   + N VV  +LVDMY K
Sbjct: 405 F-KMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAK 463

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G + D+   F+++  +D+  +  II S   + +  + L+   +MR EG+  +  T+ S 
Sbjct: 464 CGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSI 523

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L  CS +A    G+ +H    K G   D+ V   L+ MY+KCGS+ ++  VFK    +D 
Sbjct: 524 LPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDV 583

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            +W  +I     +G G+KA+ AF  M   G VPD + FV ++ ACSH GL+EEG  +F  
Sbjct: 584 VTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHR 643

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +KK Y I P I+H+AC++D+L R+    + E+FI    L P++ +W  LL AC   G+ E
Sbjct: 644 MKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTE 703

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           + E+ +E+++EL P     YV  S+I A  G+W+    +R  + ++G+KK+P CSW+E+
Sbjct: 704 IAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEI 762



 Score =  234 bits (597), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 150/558 (26%), Positives = 268/558 (48%), Gaps = 15/558 (2%)

Query: 12  PELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQ 71
           P  NV  WN+++     +G   + + L+   + +  +   ++  +V+   A     +  +
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 135

Query: 72  VVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQG 131
            +H   + +G   D ++  +L+DMY +    D A KVF  +   DVV+W ++I+  +  G
Sbjct: 136 SIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 195

Query: 132 CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGN 191
              EA +I+   R   V P+ + ++S++RA    G    G+ IH +I K G + D +V N
Sbjct: 196 YWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNN 255

Query: 192 ALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKP 251
            L+SMY +   +  G R+F+ +  +D+VSWN +   +      ++ +++F +M +  FKP
Sbjct: 256 GLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKP 314

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF 311
           ++ T   IL+AC  L D+ FGK +H + I    + +      L++MY K G L  +   F
Sbjct: 315 DLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVF 374

Query: 312 DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLA 371
             +  KD  ++ ++I  Y Q G  + A+K F+ M+ + +K +  T    L+  + +  L 
Sbjct: 375 SGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLH 433

Query: 372 NGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV 431
            G+ LH    K G   ++ VS  LV MYAKCG + D+  VF+    RD  +WN +I   V
Sbjct: 434 LGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCV 493

Query: 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI 491
                   L     M  EG  PD  T + +L  CS +    +GK+    I K+ G+   +
Sbjct: 494 HSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKL-GLESDV 552

Query: 492 KHFACMIDILGRAGKFTEIENFITETKL--TPNALVWENLLGACSWHGNIELDEKDAEKL 549
                +I++  + G    + N     KL  T + + W  L+ AC  +G       + +K 
Sbjct: 553 PVGNVLIEMYSKCG---SLRNSFQVFKLMKTKDVVTWTALISACGMYG-------EGKKA 602

Query: 550 LELEPKMESNYVFPSDIS 567
           +    +ME+  + P  ++
Sbjct: 603 VRAFGEMEAAGIVPDHVA 620



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 161/339 (47%), Gaps = 5/339 (1%)

Query: 138 KIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMY 197
           K   ++ E S    Q + +S+ RA            +H++I   G     +    L++ Y
Sbjct: 2   KTLRVLHECS---RQTLFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKY 58

Query: 198 MENGRVSYGSRVFEAIAHQDSVS-WNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTF 256
                 +    VF   +  ++V  WN++           + L ++ +      +P+  TF
Sbjct: 59  AHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTF 118

Query: 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
             ++ AC+ L D    K +H   +      +  +G +L+DMY +   L+ A   F+ +  
Sbjct: 119 PSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPL 178

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL 376
           +D+ ++ ++I+ Y   G    AL+ + + R  G+  + +T++S L  C  + ++  G ++
Sbjct: 179 RDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDII 238

Query: 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
           H +  K G   D+ V+  L++MY K   + D   +F    LRD  SWN MI GY + GL 
Sbjct: 239 HGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLY 298

Query: 437 EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           E++++ F  M+++ + PD +T   +L AC H+G +E GK
Sbjct: 299 EESIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGK 336


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/598 (33%), Positives = 327/598 (54%)

Query: 4    AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
            A RVF  +PE N+VS+  L+ G+A  G+ ++   LF  ++    + ++F L+TVLK    
Sbjct: 484  AHRVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVA 543

Query: 64   SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
               +     VHA A +LG   + F+  +L+D YS CG+  +A +VF  I   D VAW A+
Sbjct: 544  MDTLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAM 603

Query: 124  ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
            ++C  +  C +   +IF+ MR +  K N F LTS++RA         G+ IHA   K  +
Sbjct: 604  VSCYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLY 663

Query: 184  ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            +++  V  AL+ MY + G +      FE + + D + W+ + SR+      +Q   +F +
Sbjct: 664  DTERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIR 723

Query: 244  MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
            M+     PN  +   +L+AC+++  +  GKQ+H H IK   +    VG +L+D+Y K   
Sbjct: 724  MMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSD 783

Query: 304  LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
            +E +   F SL + +  ++  II  Y+++G  E AL  FR+MR   + S + T +S L  
Sbjct: 784  MESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRA 843

Query: 364  CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
            C+  A++ +   +H +  K+    D  VS +L+  YAKCG I DA  +F+     D  SW
Sbjct: 844  CASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDLVSW 903

Query: 424  NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
            N +I GY  HG    A E F MM       ++ITFV +LS C   GL+ +G   F S++ 
Sbjct: 904  NAIISGYAVHGQAAMAQELFDMMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRL 963

Query: 484  IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
             +GI P+++H+ C++ +LGRAG+  +  NFI +    P+A+VW  LL +C  H N+EL  
Sbjct: 964  DHGIEPSMEHYTCIVRLLGRAGRLNDALNFIGDIPSAPSAMVWRALLSSCIVHKNVELGR 1023

Query: 544  KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
              AEK+LE+EP+ E+ YV  S++ +  G  +  +  R  + + G++KEP  SW+E+ G
Sbjct: 1024 FSAEKVLEIEPQDETTYVLLSNMYSAAGSLDQVAFFRKSMRNIGVRKEPGLSWVEIKG 1081



 Score =  245 bits (625), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 159/521 (30%), Positives = 270/521 (51%), Gaps = 17/521 (3%)

Query: 52  FSLSTVLKGFANSGYIKAGQVVHAMAIRLG--CALDKFLSCSLVDMYSKCGLADNALKVF 109
           ++ + +L+G    G  + G+ VH   +R G    LD F +  L++MY+K G   +A +VF
Sbjct: 429 YAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHRVF 488

Query: 110 YRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
             + + ++V++  ++     +G  +EA+ +F  +R    + NQFVLT++++         
Sbjct: 489 DGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDTLG 548

Query: 170 CGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
               +HA  CK G + +  VG+AL+  Y   G VS   RVF+ I  +D+V+W A+ S + 
Sbjct: 549 LAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYS 608

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
           + + P+  L+IF +M +   K N      +L+A   LS V  GK +HA ++K   D    
Sbjct: 609 ENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERH 668

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           V  +L+DMY K G +EDA +AF+ + N D+  ++ +I+ YAQ  + E A + F +M    
Sbjct: 669 VYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSS 728

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           +  NEF+L+S L  C+ +  L  G+ +H+ A+K GH  ++FV  AL+ +YAKC  ++ + 
Sbjct: 729 VSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSL 788

Query: 410 AVFKGSALRDT--ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
            +F  S+LRD    SWN +I GY K G GE AL  FR M        ++T+  VL AC+ 
Sbjct: 789 EIF--SSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACAS 846

Query: 468 MGLIEE-GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVW 526
              I   G+ H    K  +     + +   +ID   + G   +    I ET    + + W
Sbjct: 847 TASINHVGQVHCLIEKSTFNSDTIVSN--SLIDSYAKCGCIRDARE-IFETLKECDLVSW 903

Query: 527 ENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
             ++   + HG   +    A++L ++   M  N +  +DI+
Sbjct: 904 NAIISGYAVHGQAAM----AQELFDM---MSKNSIKANDIT 937



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 99/335 (29%), Positives = 167/335 (49%), Gaps = 3/335 (0%)

Query: 151 NQFVLTSLVRATTETGDQRCGESIHAVICKYG--FESDTLVGNALVSMYMENGRVSYGSR 208
           + +    L++     GD R G ++H  + + G     D    N L++MY + G      R
Sbjct: 427 DSYAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHR 486

Query: 209 VFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSD 268
           VF+ +  ++ VS+  L          ++   +F ++  +G + N      +LK   ++  
Sbjct: 487 VFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDT 546

Query: 269 VGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITS 328
           +G    +HA   K   D N  VG++L+D Y   G + DA   FD +  KD  A+TA+++ 
Sbjct: 547 LGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSC 606

Query: 329 YAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLD 388
           Y++    E  L+ F KMR+   K N F L S L     ++++  G+ +H+ +VKT +  +
Sbjct: 607 YSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTE 666

Query: 389 MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
             V  AL+ MYAKCG+I+DA   F+     D   W++MI  Y +    E+A E F  M+ 
Sbjct: 667 RHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMR 726

Query: 449 EGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK 482
               P+E +   VL AC++M L++ GK+ H  +IK
Sbjct: 727 SSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIK 761



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 156/308 (50%), Gaps = 1/308 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+  F+ +   +V+ W+ +++ YA+    ++   LF  M       ++FSLS+VL+ 
Sbjct: 683 IEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQA 742

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            AN   +  G+ +H  AI++G   + F+  +L+D+Y+KC   +++L++F  ++D + V+W
Sbjct: 743 CANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSW 802

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             II    + G  + A  +F  MR +SV   Q   +S++RA   T        +H +I K
Sbjct: 803 NTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEK 862

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             F SDT+V N+L+  Y + G +     +FE +   D VSWNA+ S +  +        +
Sbjct: 863 STFNSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQEL 922

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL-HAHTIKHSLDGNHVVGTSLVDMYD 299
           F  M     K N  TF+ +L  C S   V  G  L  +  + H ++ +    T +V +  
Sbjct: 923 FDMMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRLLG 982

Query: 300 KSGCLEDA 307
           ++G L DA
Sbjct: 983 RAGRLNDA 990


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 222/605 (36%), Positives = 335/605 (55%), Gaps = 13/605 (2%)

Query: 4    AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
            AK +F+ M   NVVS N L+ G  +   G+    +F  MKD+    S  S   +L  F+ 
Sbjct: 809  AKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSD-SYVVLLSAFSE 867

Query: 64   SGYI----KAGQVVHAMAIRLGCALDKF-LSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
               +    + G+ VHA  IR G   +K  +   LV+MY+K G   +A  VF  + + D V
Sbjct: 868  FSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSV 927

Query: 119  AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            +W ++I+ LDQ  C ++AA+ F  MR +   P+ F L S + +    G    GE IH   
Sbjct: 928  SWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDG 987

Query: 179  CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE-SPDQG 237
             K G ++D  V NAL+++Y E G  +   +VF  +   D VSWN++     D E S  Q 
Sbjct: 988  LKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQA 1047

Query: 238  LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
            ++ F +M+  G+  +  TFI IL A SSLS      Q+HA  +K+ L  +  +G +L+  
Sbjct: 1048 VKYFLEMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSC 1107

Query: 298  YDKSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
            Y K G + +    F  ++  +D  ++ ++I+ Y        A+     M  +G + + FT
Sbjct: 1108 YGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFT 1167

Query: 357  LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
             A+ L+ C+ VATL  G  +H+  ++     D+ V +ALV MY+KCG ID A   F+   
Sbjct: 1168 FATVLSACASVATLERGMEVHACGIRACMESDVVVGSALVDMYSKCGRIDYASRFFELMP 1227

Query: 417  LRDTASWNMMIGGYVKHGLGEKALEAF-RMMLDEGYVPDEITFVV-VLSACSHMGLIEEG 474
            LR+  SWN MI GY +HG GEKAL+ F RMMLD G  PD +  ++ VLSACSH+G +EEG
Sbjct: 1228 LRNVYSWNSMISGYARHGHGEKALKLFTRMMLD-GQPPDHVAPLLGVLSACSHVGFVEEG 1286

Query: 475  KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
             +HF S+ ++Y ++P ++HF+CM+D+LGRAGK  E+ +FI    + PN L+W  +LGAC 
Sbjct: 1287 FEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACC 1346

Query: 535  WHG--NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEP 592
                 N EL  + AE LLELEP+   NYV  +++ A+  +W D +  R  +    +KKE 
Sbjct: 1347 RANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARXAMKEAAVKKEA 1406

Query: 593  SCSWI 597
             CSW+
Sbjct: 1407 GCSWV 1411



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 150/583 (25%), Positives = 282/583 (48%), Gaps = 27/583 (4%)

Query: 4    AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFS----KFSLSTVLK 59
            A+ VF  +   N +SWN++++ Y+  GD      LF SM+     FS    +++  +++ 
Sbjct: 702  ARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLIT 761

Query: 60   GFANSGYIKAGQ-VVHAMAIRL---GCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP 115
               +S  +  G  V+  M  R+   G   D ++  +LV  +++ GL D+A  +F ++   
Sbjct: 762  AACSS--VDFGLCVLEQMLARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVR 819

Query: 116  DVVAWGAIITCLDQQGCCQEAAKIFNLMRE-SSVKPNQFV--LTSLVRATTETGDQRCGE 172
            +VV+   ++  L +Q   + AAK+F+ M++   +  + +V  L++    +     +R G 
Sbjct: 820  NVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYVVLLSAFSEFSVLEEGRRKGR 879

Query: 173  SIHAVICKYGFESDTL-VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY 231
             +HA + + G   + + +GN LV+MY ++G ++    VFE +  +DSVSWN+L S     
Sbjct: 880  EVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQN 939

Query: 232  ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
            E  +     F +M   G  P+  T I  L +C+SL  +  G+Q+H   +K  LD +  V 
Sbjct: 940  ECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVS 999

Query: 292  TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQA-GEAEMALKCFRKMRLEGI 350
             +L+ +Y ++GC  +    F  +   D  ++ ++I + + +      A+K F +M   G 
Sbjct: 1000 NALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRGGW 1059

Query: 351  KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
              +  T  + L+  S ++       +H++ +K     D  +  AL++ Y KCG +++ E 
Sbjct: 1060 GLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEK 1119

Query: 411  VF-KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
            +F + S  RD  SWN MI GY+ + L  KA++    M+ +G   D  TF  VLSAC+ + 
Sbjct: 1120 IFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATVLSACASVA 1179

Query: 470  LIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWEN 528
             +E G + H   I+    +   +   + ++D+  + G+      F     L  N   W +
Sbjct: 1180 TLERGMEVHACGIRAC--MESDVVVGSALVDMYSKCGRIDYASRFFELMPLR-NVYSWNS 1236

Query: 529  LLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQG 571
            ++   + HG+        EK L+L  +M  +   P  ++   G
Sbjct: 1237 MISGYARHGH-------GEKALKLFTRMMLDGQPPDHVAPLLG 1272



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 150/543 (27%), Positives = 260/543 (47%), Gaps = 19/543 (3%)

Query: 4    AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
            A+++F  M   N+V+W  L++GY ++G   +    F  M       + ++  + L+    
Sbjct: 598  AQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQE 657

Query: 64   SGY--IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKC-GLADNALKVFYRIKDPDVVAW 120
            SG    K G  +H +  +     D  +   L+ MY  C   A++A  VF RI   + ++W
Sbjct: 658  SGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISW 717

Query: 121  GAIITCLDQQGCCQEAAKIFNLMRES----SVKPNQFVLTSLVRATTETGD-QRCG-ESI 174
             +II+   ++G    A  +F+ M++     S KPN++   SL+ A   + D   C  E +
Sbjct: 718  NSIISVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITAACSSVDFGLCVLEQM 777

Query: 175  HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
             A + K GF  D  VG+ALVS +   G       +FE +  ++ VS N L       +  
Sbjct: 778  LARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQG 837

Query: 235  DQGLRIFYQML-LKGFKPNMCTFIVILKACSSLSDV----GFGKQLHAHTIKHSLDGNHV 289
            +   ++F++M  L G   N  +++V+L A S  S +      G+++HAH I+  L+ N V
Sbjct: 838  EAAAKVFHEMKDLVGI--NSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKV 895

Query: 290  -VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
             +G  LV+MY KSG + DA   F+ +  KD  ++ ++I+   Q   +E A + F +MR  
Sbjct: 896  AIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRT 955

Query: 349  GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
            G   + FTL S L+ C+ +  +  G  +H   +K G   D+ VS AL+A+YA+ G   + 
Sbjct: 956  GSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTEC 1015

Query: 409  EAVFKGSALRDTASWNMMIGGYVKHGLG-EKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
              VF      D  SWN +IG          +A++ F  M+  G+    +TF+ +LSA S 
Sbjct: 1016 LKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINILSAVSS 1075

Query: 468  MGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWE 527
            + L E   +  + + K Y ++        ++   G+ G+  E E        T + + W 
Sbjct: 1076 LSLHEVSHQIHALVLK-YCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWN 1134

Query: 528  NLL 530
            +++
Sbjct: 1135 SMI 1137



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 143/484 (29%), Positives = 239/484 (49%), Gaps = 33/484 (6%)

Query: 73   VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
            +H  +I+ G   + FLS +L+++Y + G   +A K+F  + + ++V W  +I+   Q G 
Sbjct: 566  LHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGK 625

Query: 133  CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC--GESIHAVICKYGFESDTLVG 190
              EA   F  M  +   PN +   S +RA  E+G   C  G  IH +I K  + SD +V 
Sbjct: 626  PDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVC 685

Query: 191  NALVSMYMENGRVSYGSR-VFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG- 248
            N L+SMY      +  +R VF+ I  ++S+SWN++ S +           +F  M  +G 
Sbjct: 686  NVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSMQKEGL 745

Query: 249  ---FKPNMCTF-IVILKACSSLSDVGFG----KQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
               FKPN  TF  +I  ACSS   V FG    +Q+ A   K     +  VG++LV  + +
Sbjct: 746  GFSFKPNEYTFGSLITAACSS---VDFGLCVLEQMLARVEKSGFLQDLYVGSALVSGFAR 802

Query: 301  SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR-LEGIKSNEFTLAS 359
             G  +DA   F+ +  +++ +   ++    +  + E A K F +M+ L GI S+ + +  
Sbjct: 803  FGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYVV-- 860

Query: 360  CLNGCSPVATLANGRL----LHSIAVKTGHLLD--MFVSTALVAMYAKCGSIDDAEAVFK 413
             L+  S  + L  GR     +H+  ++TG L D  + +   LV MYAK G+I DA +VF+
Sbjct: 861  LLSAFSEFSVLEEGRRKGREVHAHVIRTG-LNDNKVAIGNGLVNMYAKSGAIADACSVFE 919

Query: 414  GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
                +D+ SWN +I G  ++   E A E+F  M   G +P   T +  LS+C+ +G I  
Sbjct: 920  LMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIML 979

Query: 474  GKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTP--NALVWENLL 530
            G++ H   +K   G+   +     ++ +    G FTE     +   L P  + + W +++
Sbjct: 980  GEQIHCDGLK--LGLDTDVSVSNALLALYAETGCFTECLKVFS---LMPEYDQVSWNSVI 1034

Query: 531  GACS 534
            GA S
Sbjct: 1035 GALS 1038



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 161/317 (50%), Gaps = 14/317 (4%)

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
              +H    KYGF  +  + N L+++Y+  G +    ++F+ +++++ V+W  L S +  
Sbjct: 563 ARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQ 622

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKAC--SSLSDVGFGKQLHAHTIKHSLDGNH 288
              PD+    F  M+  GF PN   F   L+AC  S  S    G Q+H    K     + 
Sbjct: 623 NGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDV 682

Query: 289 VVGTSLVDMYDKSGCLE---DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM 345
           VV   L+ MY    CL+   DA   FD +  ++  ++ +II+ Y++ G+   A   F  M
Sbjct: 683 VVCNVLISMY--GSCLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSM 740

Query: 346 RLEGI----KSNEFTLASCLN-GCSPVA-TLANGRLLHSIAVKTGHLLDMFVSTALVAMY 399
           + EG+    K NE+T  S +   CS V   L     + +   K+G L D++V +ALV+ +
Sbjct: 741 QKEGLGFSFKPNEYTFGSLITAACSSVDFGLCVLEQMLARVEKSGFLQDLYVGSALVSGF 800

Query: 400 AKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFV 459
           A+ G  DDA+ +F+   +R+  S N ++ G VK   GE A + F  M D   +  + ++V
Sbjct: 801 ARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSD-SYV 859

Query: 460 VVLSACSHMGLIEEGKK 476
           V+LSA S   ++EEG++
Sbjct: 860 VLLSAFSEFSVLEEGRR 876



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 59/118 (50%)

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
           S+  T  S +N           R LH  ++K G + ++F+S  L+ +Y + G +  A+ +
Sbjct: 542 SSSETFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKL 601

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
           F   + R+  +W  +I GY ++G  ++A   FR M+  G++P+   F   L AC   G
Sbjct: 602 FDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESG 659



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 12/152 (7%)

Query: 1    MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMK-DMEKKFSKFSLSTVLK 59
            ++ A R F+ MP  NV SWN++++GYA  G G+K + LF  M  D +       L  VL 
Sbjct: 1216 IDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVAPLLGVLS 1275

Query: 60   GFANSGYIKAG-QVVHAMA--IRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DP 115
              ++ G+++ G +   +M+   RL   ++ F SC +VD+  + G  D        +   P
Sbjct: 1276 ACSHVGFVEEGFEHFKSMSEVYRLSPRVEHF-SC-MVDLLGRAGKLDEVGDFINSMPMKP 1333

Query: 116  DVVAWGAIITCLDQQGCCQEAAKIFNLMRESS 147
            +V+ W  ++       CC+   +   L R ++
Sbjct: 1334 NVLIWRTVLG-----ACCRANGRNTELGRRAA 1360


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/602 (36%), Positives = 327/602 (54%), Gaps = 9/602 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK---- 59
           A+ VF  M E ++ SW  ++ G A+ G GQ+   LF  M   ++     +L+T L     
Sbjct: 374 ARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQM---QRNGCLPNLTTYLSILNA 430

Query: 60  -GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
              A++  ++  +VVH  A   G   D  +  +L+ MY+KCG  D+A  VF  + D DV+
Sbjct: 431 SAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVI 490

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +W A++  L Q GC  EA  +F  M++  + P+     SL+     T        +H   
Sbjct: 491 SWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHA 550

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            + G  SD  VG+A + MY+  G +     +F+ ++ +   +WNA+           + L
Sbjct: 551 VETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREAL 610

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            +F QM  +GF P+  TFI IL A      + + K++H+H     L  +  VG +LV  Y
Sbjct: 611 SLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGLV-DLRVGNALVHTY 669

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G ++ A   FD +  +++  +T +I   AQ G    A   F +M  EGI  +  T  
Sbjct: 670 SKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYV 729

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L+ C+    L   + +H+ AV  G + D+ V  ALV MYAKCGSIDDA +VF     R
Sbjct: 730 SILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVER 789

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D  SW +MIGG  +HG G +AL+ F  M  EG+ P+  ++V VL+ACSH GL++EG++ F
Sbjct: 790 DVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQF 849

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            S+ + YGI PT++H+ CM+D+LGRAG   E E FI    + P+   W  LLGAC  +GN
Sbjct: 850 LSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGN 909

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           +E+ E  A++ L+L+PK  S YV  S+I A  G+W     VR+++  +GI+KEP  SWIE
Sbjct: 910 LEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIE 969

Query: 599 VD 600
           VD
Sbjct: 970 VD 971



 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 141/466 (30%), Positives = 238/466 (51%), Gaps = 2/466 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A++VF  + + N+  W  ++ GYAE G  +  M ++  M+    + ++ +  ++LK 
Sbjct: 169 LQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKA 228

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 +K G+ +HA  I+ G   D  +  +LV+MY KCG  ++A  +F ++ + +V++W
Sbjct: 229 CCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISW 288

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I  L   G  QEA  +F  M+     PN +   S++ A    G     + +H+    
Sbjct: 289 TVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVN 348

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G   D  VGNALV MY ++G +     VF+ +  +D  SW  +      +    +   +
Sbjct: 349 AGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSL 408

Query: 241 FYQMLLKGFKPNMCTFIVILK--ACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           F QM   G  PN+ T++ IL   A +S S + + K +H H  +     +  +G +L+ MY
Sbjct: 409 FLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMY 468

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G ++DA + FD + ++D+ ++ A++   AQ G    A   F +M+ EG+  +  T  
Sbjct: 469 AKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYL 528

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S LN       L     +H  AV+TG + D  V +A + MY +CGSIDDA  +F   ++R
Sbjct: 529 SLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVR 588

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
              +WN MIGG  +   G +AL  F  M  EG++PD  TF+ +LSA
Sbjct: 589 HVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSA 634



 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 133/414 (32%), Positives = 222/414 (53%), Gaps = 2/414 (0%)

Query: 52  FSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYR 111
           FS   +L+       I   + VH   I+ G   + +++  L+ +Y +CG    A +VF +
Sbjct: 119 FSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDK 178

Query: 112 IKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG 171
           +   ++  W  +I    + G  ++A ++++ MR+   +PN+    S+++A     + + G
Sbjct: 179 LLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWG 238

Query: 172 ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY 231
           + IHA I + GF+SD  V  ALV+MY++ G +     +F+ +  ++ +SW  +      Y
Sbjct: 239 KKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHY 298

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
               +   +F QM  +GF PN  T++ IL A +S   + + K++H+H +   L  +  VG
Sbjct: 299 GRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVG 358

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
            +LV MY KSG ++DA V FD +  +D+F++T +I   AQ G  + A   F +M+  G  
Sbjct: 359 NALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCL 418

Query: 352 SNEFTLASCLNGCSPVAT--LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
            N  T  S LN  +  +T  L   +++H  A + G + D+ +  AL+ MYAKCGSIDDA 
Sbjct: 419 PNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDAR 478

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
            VF G   RD  SWN M+GG  ++G G +A   F  M  EG VPD  T++ +L+
Sbjct: 479 LVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLN 532



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 105/331 (31%), Positives = 177/331 (53%)

Query: 134 QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNAL 193
           ++A  +  +  +  +  + F   ++++   +  D    + +H  I K G E +  V N L
Sbjct: 100 KDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKL 159

Query: 194 VSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
           + +Y+  GR+    +VF+ +  ++   W  +   + +Y   +  +R++ +M  +  +PN 
Sbjct: 160 LRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNE 219

Query: 254 CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
            T++ ILKAC    ++ +GK++HAH I+     +  V T+LV+MY K G +EDA + FD 
Sbjct: 220 ITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDK 279

Query: 314 LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG 373
           +  +++ ++T +I   A  G  + A   F +M+ EG   N +T  S LN  +    L   
Sbjct: 280 MVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWV 339

Query: 374 RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKH 433
           + +HS AV  G  LD+ V  ALV MYAK GSIDDA  VF G   RD  SW +MIGG  +H
Sbjct: 340 KEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQH 399

Query: 434 GLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
           G G++A   F  M   G +P+  T++ +L+A
Sbjct: 400 GRGQEAFSLFLQMQRNGCLPNLTTYLSILNA 430



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 174/354 (49%), Gaps = 22/354 (6%)

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           +G   +  +++ IL+ C    D+   KQ+H   IK  ++ N  V   L+ +Y + G L+ 
Sbjct: 112 QGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQC 171

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A   FD L  K+++ +T +I  YA+ G AE A++ + KMR E  + NE T  S L  C  
Sbjct: 172 ARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCC 231

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
              L  G+ +H+  +++G   D+ V TALV MY KCGSI+DA+ +F     R+  SW +M
Sbjct: 232 PVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVM 291

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIY 485
           IGG   +G G++A   F  M  EG++P+  T+V +L+A +  G +E  K+ H  ++    
Sbjct: 292 IGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNA-- 349

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKD 545
           G+   ++    ++ +  ++G   +    + +     +   W  ++G  + HG        
Sbjct: 350 GLALDLRVGNALVHMYAKSGSIDD-ARVVFDGMTERDIFSWTVMIGGLAQHGR------- 401

Query: 546 AEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            ++   L  +M+ N   P           + +   ++L++  I    +  W++V
Sbjct: 402 GQEAFSLFLQMQRNGCLP-----------NLTTYLSILNASAIASTSALEWVKV 444



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 80/166 (48%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ AK+VF  M E NV +W  ++ G A+ G G      F  M          +  ++L  
Sbjct: 675 VKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSA 734

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A++G ++  + VH  A+  G   D  +  +LV MY+KCG  D+A  VF  + + DV +W
Sbjct: 735 CASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSW 794

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
             +I  L Q G   EA   F  M+    KPN +   +++ A +  G
Sbjct: 795 TVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAG 840


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/594 (33%), Positives = 336/594 (56%)

Query: 6   RVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSG 65
           + F SMPE N VSW+A++ G  ++ D +  + LF  M+      S+ + ++V +  A   
Sbjct: 230 QFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLS 289

Query: 66  YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT 125
            ++ G  +H  A++     D  +  + +DMY KC    +A K+F  + + ++ ++ AII 
Sbjct: 290 ALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIV 349

Query: 126 CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
              +     EA  +F L+++S +  ++  L+   RA         G  +H +  K   +S
Sbjct: 350 GYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQS 409

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           +  V NA++ MY + G +     VFE +  +D+VSWNA+ +  +   + ++ L +F  ML
Sbjct: 410 NICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWML 469

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
             G +P+  T+  +LKAC+    +  G ++H   IK  L  +  VG +L+DMY K G +E
Sbjct: 470 QSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMME 529

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
            A    D LA + + ++ AII+ ++   ++E A K F KM   G+  + FT A+ L+ C+
Sbjct: 530 KAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCA 589

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
            + T+  G+ +H+  +K     D ++S+ LV MY+KCG++ D + +F+ +  RD  +WN 
Sbjct: 590 NLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNA 649

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIY 485
           M+ GY +HGLGE+AL+ F  M  E   P+  TF+ VL AC HMGL+E+G  +F S+   Y
Sbjct: 650 MVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNY 709

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKD 545
           G+ P ++H++C++DI+GR+G+ ++    I       +A++W  LL  C  HGN+E+ EK 
Sbjct: 710 GLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKA 769

Query: 546 AEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           A  +L+LEP+  + YV  S+I A  G WN+ + +R ++   G+KKEP CSWIE+
Sbjct: 770 AYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEI 823



 Score =  251 bits (640), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 150/536 (27%), Positives = 272/536 (50%), Gaps = 4/536 (0%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           +A+++F +MPE +VVSWN+L++GY  +GD +KV+ +F  M  M   F + + + VLK  +
Sbjct: 126 VAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCS 185

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           +      G  +H +A+++G   D     +L+DMY+KC   D +++ F+ + + + V+W A
Sbjct: 186 SLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSA 245

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           II    Q    +   ++F  M+++ V  +Q    S+ R+       R G  +H    K  
Sbjct: 246 IIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTD 305

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F +D ++G A + MYM+   +S   ++F ++ + +  S+NA+   +   +   + L +F 
Sbjct: 306 FGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFR 365

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            +   G   +  +     +AC+ +     G Q+H  ++K     N  V  +++DMY K G
Sbjct: 366 LLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCG 425

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            L +A + F+ + ++D  ++ AII ++ Q G  E  L  F  M   G++ +EFT  S L 
Sbjct: 426 ALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLK 485

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+    L  G  +H+  +K+   LD FV  AL+ MY+KCG ++ AE +    A +   S
Sbjct: 486 ACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVS 545

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSI 481
           WN +I G+      E+A + F  ML+ G  PD  T+  +L  C+++  +E GK+ H   I
Sbjct: 546 WNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQII 605

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           KK       I   + ++D+  + G   + +  I E     + + W  ++   + HG
Sbjct: 606 KKELQSDAYIS--STLVDMYSKCGNMQDFQ-LIFEKAPNRDFVTWNAMVCGYAQHG 658



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 148/539 (27%), Positives = 246/539 (45%), Gaps = 45/539 (8%)

Query: 51  KFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFY 110
           K + S + +  ++   +  G+  HA  I        F++  L+ MY KC   + A KVF 
Sbjct: 42  KKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFD 101

Query: 111 RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR- 169
            +   D V+W A++     +G    A K+F+ M E  V        SL+      GD R 
Sbjct: 102 GMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDV----VSWNSLISGYLHNGDHRK 157

Query: 170 --------------------------C--------GESIHAVICKYGFESDTLVGNALVS 195
                                     C        G  IH +  K GF+ D + G+AL+ 
Sbjct: 158 VIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLD 217

Query: 196 MYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCT 255
           MY +  ++    + F ++  ++ VSW+A+ +     +    GL +F +M   G   +  T
Sbjct: 218 MYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQST 277

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
           F  + ++C+ LS +  G QLH H +K     + V+GT+ +DMY K   L DA   F+SL 
Sbjct: 278 FASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLP 337

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRL 375
           N +L +Y AII  YA++ +   AL  FR ++  G+  +E +L+     C+ +     G  
Sbjct: 338 NHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQ 397

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           +H +++K+    ++ V+ A++ MY KCG++ +A  VF+    RD  SWN +I  + ++G 
Sbjct: 398 VHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGN 457

Query: 436 GEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHF 494
            EK L  F  ML  G  PDE T+  VL AC+    +  G + H   IK   G+   +   
Sbjct: 458 EEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVG-- 515

Query: 495 ACMIDILGRAGKFTEIENFITETKLTPNALV-WENLLGACSWHGNIELDEKDAEKLLEL 552
             +ID+  + G   + E      +L    +V W  ++   S     E  +K   K+LE+
Sbjct: 516 IALIDMYSKCGMMEKAEKL--HDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEM 572


>gi|115456537|ref|NP_001051869.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|41469627|gb|AAS07350.1| putative pentatricopeptide repeat domain contianing protein [Oryza
           sativa Japonica Group]
 gi|113550340|dbj|BAF13783.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|215686748|dbj|BAG89598.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 702

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/596 (33%), Positives = 326/596 (54%), Gaps = 9/596 (1%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           +F  MP  NVV+W ++++GY  +G  +  + +F  M +     + F+ +  L   A+ G 
Sbjct: 70  LFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGA 129

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           ++AG+ VH++A+R G A D ++   L++MYS+CG    A +VF R+  PDVV + ++I+ 
Sbjct: 130 LRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISA 189

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA-VICKYGFES 185
             + G  + AA+    M +  +KPN+  +T+++ A         G+ IH  +I K G  S
Sbjct: 190 FCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRV----LGQQIHGYLIKKIGLRS 245

Query: 186 DTLVGN-ALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
            ++  + AL+  Y  NG       VF+++  ++ VSW ++   +      ++ L++F  M
Sbjct: 246 QSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDM 305

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
           + +G  PN     ++L AC S   +G G+QLH   IKH L  +  V  +L+ MY ++G +
Sbjct: 306 ISEGVDPNEFALSIVLGACGS---IGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLV 362

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
           E+     + + N DL ++T  I++  Q G  E A+    +M  EG   N +  +S L+ C
Sbjct: 363 EELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSC 422

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
           + VA+L  G   H +A+K G   ++    AL+ MY+KCG +  A   F      D  SWN
Sbjct: 423 ADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWN 482

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
            +I G+ +HG   KALE F  M   G  PD+ TF+ VL  C+H G++EEG+  F  +   
Sbjct: 483 SLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQ 542

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEK 544
           Y  TP   H+ACMID+LGR G+F E    I +    P+AL+W+ LL +C  H N+++ + 
Sbjct: 543 YSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKL 602

Query: 545 DAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
            A++L+EL  +  ++YV  S+I A  G W D   VR  +   G+KK+  CSWIE++
Sbjct: 603 AADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEIN 658



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 148/489 (30%), Positives = 234/489 (47%), Gaps = 20/489 (4%)

Query: 81  GCA--LDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAK 138
           GCA   D  L C  ++   K G   +AL +F R+   +VVAW ++++   + G  + A  
Sbjct: 41  GCAESPDVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALA 100

Query: 139 IFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYM 198
           +F  M ES V PN F   + + A  + G  R GE +H++  + GF  D  +G+ L+ MY 
Sbjct: 101 MFADMVESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYS 160

Query: 199 ENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIV 258
             G +     VF+ +   D V + +L S F      +       QML +G KPN  T   
Sbjct: 161 RCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTT 220

Query: 259 ILKACSSLSDVGFGKQLHAHTIKH-SLDGNHVV-GTSLVDMYDKSGCLEDAGVAFDSLAN 316
           IL AC  +     G+Q+H + IK   L    V   T+L+D Y ++G  + A   FDSL  
Sbjct: 221 ILTACPRV----LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHC 276

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL 376
           K++ ++ +++  Y + G  E AL+ F  M  EG+  NEF L+  L  C  +     GR L
Sbjct: 277 KNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGL---GRQL 333

Query: 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
           H  A+K   + D+ VS AL++MY + G +++ EA+       D  SW   I    ++G G
Sbjct: 334 HCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFG 393

Query: 437 EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFAC 496
           EKA+     M  EG+ P+   F  VLS+C+ +  +++G + F  +    G    I     
Sbjct: 394 EKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQ-FHCLALKLGCDSEICTGNA 452

Query: 497 MIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKM 556
           +I++  + G+         +   T +   W +L+   + HG       DA K LE+  KM
Sbjct: 453 LINMYSKCGQMGSAR-LAFDVMHTHDVTSWNSLIHGHAQHG-------DANKALEVFSKM 504

Query: 557 ESNYVFPSD 565
            SN + P D
Sbjct: 505 RSNGIKPDD 513



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 189/374 (50%), Gaps = 24/374 (6%)

Query: 162 TTETGDQRCGESIHAVI-CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS 220
           +    D  C ES   V+ CK             ++  +++GR++    +F+ +  ++ V+
Sbjct: 34  SAAAADNGCAESPDVVLECKR------------LNRLVKSGRLADALDLFDRMPRKNVVA 81

Query: 221 WNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTI 280
           W ++ S +     P+  L +F  M+  G  PN       L AC+ L  +  G+Q+H+  +
Sbjct: 82  WTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQVHSLAV 141

Query: 281 KHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALK 340
           +    G+  +G+ L++MY + G L  A   FD + + D+  YT++I+++ + GE E+A +
Sbjct: 142 RAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAE 201

Query: 341 CFRKMRLEGIKSNEFTLASCLNGCSPV-ATLANGRLLHSIAVKTGHLLDMFVSTALVAMY 399
              +M  +G+K NE T+ + L  C  V     +G L+  I +++     ++ STAL+  Y
Sbjct: 202 ALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIKKIGLRSQ---SVYSSTALIDFY 258

Query: 400 AKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFV 459
           ++ G    A+AVF     ++  SW  M+  Y++ G  E+AL+ F  M+ EG  P+E    
Sbjct: 259 SRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALS 318

Query: 460 VVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK 518
           +VL AC  +GL   G++ H S+IK  + +   I+    ++ + GR G   E+E  + + +
Sbjct: 319 IVLGACGSIGL---GRQLHCSAIK--HDLITDIRVSNALLSMYGRTGLVEELEAMLNKIE 373

Query: 519 LTPNALVWENLLGA 532
             P+ + W   + A
Sbjct: 374 -NPDLVSWTTAISA 386



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 172/388 (44%), Gaps = 39/388 (10%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           +LAK VF S+   NVVSW +++  Y   G  ++ + +F  M       ++F+LS VL   
Sbjct: 265 KLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGA- 323

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
              G I  G+ +H  AI+     D  +S +L+ MY + GL +    +  +I++PD+V+W 
Sbjct: 324 --CGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWT 381

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
             I+   Q G  ++A  +   M      PN +  +S++ +  +      G   H +  K 
Sbjct: 382 TAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKL 441

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G +S+   GNAL++MY + G++      F+ +   D  SWN+L      +   ++ L +F
Sbjct: 442 GCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVF 501

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTI-KHSLDGNHVVGTSLVDMYDK 300
            +M   G KP+  TF+ +L  C+    V  G+      I ++S          ++DM  +
Sbjct: 502 SKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGR 561

Query: 301 SGCLEDA-----GVAFDS------------------------------LANKDLFAYTAI 325
           +G  ++A      + F+                               L+++D  +Y  +
Sbjct: 562 NGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLM 621

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSN 353
              YA  GE E A K  R+M   G+K +
Sbjct: 622 SNIYAMHGEWEDARKVRRRMDETGVKKD 649



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 145/301 (48%), Gaps = 19/301 (6%)

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           KSG L DA   FD +  K++ A+T++++ Y + G  E AL  F  M   G+  N+F   +
Sbjct: 60  KSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNA 119

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L  C+ +  L  G  +HS+AV+ G   D ++ + L+ MY++CGS+  A+ VF      D
Sbjct: 120 ALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPD 179

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
              +  +I  + ++G  E A EA   ML +G  P+E T   +L+AC     +   + H  
Sbjct: 180 VVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPR---VLGQQIHGY 236

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
            IKKI   + ++     +ID   R G+F ++   + ++    N + W +++        +
Sbjct: 237 LIKKIGLRSQSVYSSTALIDFYSRNGEF-KLAKAVFDSLHCKNVVSWCSMM-------QL 288

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            + +   E+ L++   M S  V P++ +         S V     S G+ ++  CS I+ 
Sbjct: 289 YIRDGRLEEALQVFGDMISEGVDPNEFA--------LSIVLGACGSIGLGRQLHCSAIKH 340

Query: 600 D 600
           D
Sbjct: 341 D 341



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 65/134 (48%), Gaps = 16/134 (11%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A+  F  M   +V SWN+L++G+A+ GD  K + +F  M+    K    +   VL G
Sbjct: 463 MGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMG 522

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKF--------LSCSLVDMYSKCGLADNALKVFYRI 112
             +SG ++ G++   + I      D++         +C ++DM  + G  D AL++   +
Sbjct: 523 CNHSGMVEEGELFFRLMI------DQYSFTPAPSHYAC-MIDMLGRNGRFDEALRMINDM 575

Query: 113 K-DPDVVAWGAIIT 125
             +PD + W  ++ 
Sbjct: 576 PFEPDALIWKTLLA 589


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/599 (31%), Positives = 336/599 (56%), Gaps = 2/599 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A++VF+ MP  +VVSWN+L++GY  +G   + + ++   +++      +++S+VL+ 
Sbjct: 225 LDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRA 284

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
               G ++ G ++H +  ++G   D  ++  L+ MY K     +  ++F ++   D V+W
Sbjct: 285 CGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSW 344

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I    Q G  +E+ K+F  M  +  KP+   +TS+++A    GD   G+ +H  +  
Sbjct: 345 NTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMIT 403

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G+E DT   N L++MY + G +     VF  +  +DSVSWN++ + +    S D+ +++
Sbjct: 404 SGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKL 463

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M+    KP+  T++++L   + L D+  GK+LH    K   + N VV  +LVDMY K
Sbjct: 464 F-KMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAK 522

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G + D+   F+++  +D+  +  II S   + +  + L+   +MR EG+  +  T+ S 
Sbjct: 523 CGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSI 582

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L  CS +A    G+ +H    K G   D+ V   L+ MY+KCGS+ ++  VFK    +D 
Sbjct: 583 LPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDV 642

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            +W  +I     +G G+KA+ AF  M   G VPD + FV ++ ACSH GL+EEG  +F  
Sbjct: 643 VTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHR 702

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +KK Y I P I+H+AC++D+L R+    + E+FI    L P++ +W  LL AC   G+ E
Sbjct: 703 MKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTE 762

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           + ++ +E+++EL P     YV  S++ A  G+W+    +R  + ++G+KK+P CSW+E+
Sbjct: 763 IAQRVSERIIELNPDDTGYYVLVSNVYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEI 821



 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 150/558 (26%), Positives = 268/558 (48%), Gaps = 15/558 (2%)

Query: 12  PELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQ 71
           P  NV  WN+++     +G   + + L+   + +  +   ++  +V+   A     +  +
Sbjct: 135 PSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 194

Query: 72  VVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQG 131
            +H   + +G   D ++  +L+DMY +    D A KVF  +   DVV+W ++I+  +  G
Sbjct: 195 SIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 254

Query: 132 CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGN 191
              EA +I+   R   V P+ + ++S++RA    G    G+ IH +I K G + D +V N
Sbjct: 255 YWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNN 314

Query: 192 ALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKP 251
            L+SMY +   +  G R+F+ +  +D+VSWN +   +      ++ +++F +M +  FKP
Sbjct: 315 GLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKP 373

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF 311
           ++ T   IL+AC  L D+ FGK +H + I    + +      L++MY K G L  +   F
Sbjct: 374 DLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVF 433

Query: 312 DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLA 371
             +  KD  ++ ++I  Y Q G  + A+K F+ M+ + +K +  T    L+  + +  L 
Sbjct: 434 SGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLX 492

Query: 372 NGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV 431
            G+ LH    K G   ++ VS  LV MYAKCG + D+  VF+    RD  +WN +I   V
Sbjct: 493 LGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCV 552

Query: 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI 491
                   L     M  EG  PD  T + +L  CS +    +GK+    I K+ G+   +
Sbjct: 553 HSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKL-GLESDV 611

Query: 492 KHFACMIDILGRAGKFTEIENFITETKL--TPNALVWENLLGACSWHGNIELDEKDAEKL 549
                +I++  + G    + N     KL  T + + W  L+ AC  +G       + +K 
Sbjct: 612 PVGNVLIEMYSKCG---SLRNSFQVFKLMKTKDVVTWTALISACGMYG-------EGKKA 661

Query: 550 LELEPKMESNYVFPSDIS 567
           +    +ME+  + P  ++
Sbjct: 662 VRAFGEMEAAGIVPDHVA 679



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 161/339 (47%), Gaps = 5/339 (1%)

Query: 138 KIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMY 197
           K   ++ E S    Q + +S+ RA            +H++I   G     +    L++ Y
Sbjct: 61  KTLRVLHECS---RQTLFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKY 117

Query: 198 MENGRVSYGSRVFEAIAHQDSV-SWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTF 256
                 +    VF   +  ++V  WN++           + L ++ +      +P+  TF
Sbjct: 118 AHFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTF 177

Query: 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
             ++ AC+ L D    K +H   +      +  +G +L+DMY +   L+ A   F+ +  
Sbjct: 178 PSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPL 237

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL 376
           +D+ ++ ++I+ Y   G    AL+ + + R  G+  + +T++S L  C  + ++  G ++
Sbjct: 238 RDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDII 297

Query: 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
           H +  K G   D+ V+  L++MY K   + D   +F    LRD  SWN MI GY + GL 
Sbjct: 298 HGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLY 357

Query: 437 EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           E++++ F  M+++ + PD +T   +L AC H+G +E GK
Sbjct: 358 EESIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGK 395


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/598 (33%), Positives = 330/598 (55%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++ F S+    VV+WNA++ GYA+ G  ++   LF  M D   + S  +   VL   ++
Sbjct: 115 ARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSS 174

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +K G+  HA  I++G   D  +  +LV MY K G  D A +VF  +   DV  +  +
Sbjct: 175 PAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVM 234

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    + G  ++A ++F  M++   KPN+    S++   +       G+++HA     G 
Sbjct: 235 IGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGL 294

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D  V  AL+ MYM  G +    RVF+ +  +D VSW  +   + +  + +    +F  
Sbjct: 295 VDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFAT 354

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +G +P+  T+I I+ AC+S +D+   +++H+  ++     + +V T+LV MY K G 
Sbjct: 355 MQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGA 414

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++DA   FD+++ +D+ +++A+I +Y + G  E A + F  M+   ++ +  T  + LN 
Sbjct: 415 IKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNA 474

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C  +  L  G  +++ A+K   +  + V  AL+ M  K GSI+ A  +F+    RD  +W
Sbjct: 475 CGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTW 534

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N+MIGGY  HG   +AL+ F  ML E + P+ +TFV VLSACS  G +EEG++ FS +  
Sbjct: 535 NVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLD 594

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
             GI PT++ + CM+D+LGRAG+  E E  I    L PN+ +W  LL AC  +GN+++ E
Sbjct: 595 GRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAE 654

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           + AE+ L  EP   + YV  S + A  G W + + VR ++ S+G++KE  C+WIEV+G
Sbjct: 655 RAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEG 712



 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 161/524 (30%), Positives = 266/524 (50%), Gaps = 21/524 (4%)

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
           G+ V    I+ G  L+ +   +L+ ++S CG    A + F  +++  VV W AII    Q
Sbjct: 80  GKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQ 139

Query: 130 QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
            G  +EA  +F  M + +++P+      ++ A +     + G+  HA + K GF SD  +
Sbjct: 140 LGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRI 199

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
           G ALVSMY++ G +    +VF+ +  +D  ++N +   +      ++  ++FY+M  +GF
Sbjct: 200 GTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGF 259

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
           KPN  +F+ IL  CS+   + +GK +HA  +   L  +  V T+L+ MY   G +E A  
Sbjct: 260 KPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARR 319

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369
            FD +  +D+ ++T +I  YA+    E A   F  M+ EGI+ +  T    +N C+  A 
Sbjct: 320 VFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSAD 379

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           L+  R +HS  V+ G   D+ V TALV MYAKCG+I DA  VF   + RD  SW+ MIG 
Sbjct: 380 LSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGA 439

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITP 489
           YV++G GE+A E F +M      PD +T++ +L+AC H+G ++ G + ++   K      
Sbjct: 440 YVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIK----AD 495

Query: 490 TIKHFACMIDILGRAGKFTEIE--NFITETKLTPNALVWENLLGACSWHGNIELDEKDAE 547
            + H      ++    K   IE   +I E  +  + + W  ++G  S HGN       A 
Sbjct: 496 LVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGN-------AR 548

Query: 548 KLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
           + L+L  +M      P+ ++        F GV +  S  G  +E
Sbjct: 549 EALDLFDRMLKERFRPNSVT--------FVGVLSACSRAGFVEE 584



 Score =  218 bits (556), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 140/529 (26%), Positives = 260/529 (49%), Gaps = 20/529 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A++VF  + + +V ++N ++ GYA+SGDG+K   LF  M+    K ++ S  ++L G
Sbjct: 213 MDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDG 272

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    +  G+ VHA  +  G   D  ++ +L+ MY  CG  + A +VF ++K  DVV+W
Sbjct: 273 CSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSW 332

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I    +    ++A  +F  M+E  ++P++     ++ A   + D      IH+ + +
Sbjct: 333 TVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVR 392

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GF +D LV  ALV MY + G +    +VF+A++ +D VSW+A+   + +    ++    
Sbjct: 393 AGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFET 452

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F+ M     +P++ T+I +L AC  L  +  G +++   IK  L  +  VG +L++M  K
Sbjct: 453 FHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVK 512

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +E A   F+++  +D+  +  +I  Y+  G A  AL  F +M  E  + N  T    
Sbjct: 513 HGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGV 572

Query: 361 LNGCSPVATLANGRLLHSIAVK-TGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
           L+ CS    +  GR   S  +   G +  M +   +V +  + G +D+AE +     L+ 
Sbjct: 573 LSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKP 632

Query: 420 TAS-WNMMIGGYVKHG---LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
            +S W+ ++     +G   + E+A E  R ++ E Y  D   +V +    SHM       
Sbjct: 633 NSSIWSTLLAACRIYGNLDVAERAAE--RCLMSEPY--DGAVYVQL----SHMYAAAGMW 684

Query: 476 KHFSSIKKIYGITPTIKHFACM-IDILGRAGKFTEIENFITETKLTPNA 523
           ++ + ++K+       K   C  I++ G+      +  F+ E +  P A
Sbjct: 685 ENVAKVRKVMESRGVRKEQGCTWIEVEGK------LHTFVVEDRSHPQA 727



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/415 (28%), Positives = 204/415 (49%), Gaps = 41/415 (9%)

Query: 168 QRC--------GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSV 219
           QRC        G+ +   I + G + +    N L+ ++   G +    + F+++ ++  V
Sbjct: 69  QRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVV 128

Query: 220 SWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHT 279
           +WNA+ + +       +   +F QM+ +  +P++ TF+++L ACSS + +  GK+ HA  
Sbjct: 129 TWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQV 188

Query: 280 IKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMAL 339
           IK     +  +GT+LV MY K G ++ A   FD L  +D+  +  +I  YA++G+ E A 
Sbjct: 189 IKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAF 248

Query: 340 KCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMY 399
           + F +M+ EG K N  +  S L+GCS    LA G+ +H+  + TG + D+ V+TAL+ MY
Sbjct: 249 QLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMY 308

Query: 400 AKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFV 459
             CGSI+ A  VF    +RD  SW +MI GY ++   E A   F  M +EG  PD IT++
Sbjct: 309 MGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYI 368

Query: 460 VVLSACSHMGLIEEGKKHFSSIKK---------------IYGITPTIKHFACMIDILGRA 504
            +++AC+    +   ++  S + +               +Y     IK    + D + R 
Sbjct: 369 HIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRR 428

Query: 505 ---------GKFTE-------IENF--ITETKLTPNALVWENLLGACSWHGNIEL 541
                    G + E        E F  +    + P+ + + NLL AC   G ++L
Sbjct: 429 DVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDL 483



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 80/212 (37%), Positives = 118/212 (55%)

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
           T++ + + C  L D G GKQ+  H I+     N     +L+ ++   G + +A   FDS+
Sbjct: 63  TYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSV 122

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
            NK +  + AII  YAQ G  + A   FR+M  E ++ +  T    L+ CS  A L  G+
Sbjct: 123 ENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGK 182

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
             H+  +K G + D  + TALV+MY K GS+D A  VF G   RD +++N+MIGGY K G
Sbjct: 183 EFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSG 242

Query: 435 LGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
            GEKA + F  M  EG+ P+ I+F+ +L  CS
Sbjct: 243 DGEKAFQLFYRMQQEGFKPNRISFLSILDGCS 274


>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
 gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/599 (36%), Positives = 325/599 (54%), Gaps = 3/599 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGD--GQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           AK VF+++   NVVS+N L++G + +G      V+ LF  M          +   V    
Sbjct: 62  AKLVFENLKHKNVVSYNCLIHGLSHNGSKGSNFVLELFRRMIANNILPDAHTFPGVFTAA 121

Query: 62  A-NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           A N G     + VH + I+     D F+  SLV+ Y K G    A K+F R+ + ++V+W
Sbjct: 122 ALNLGCNFDARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSW 181

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+    +   +EA  +F LMR      N+FV TS++ A         G+ +H V+ K
Sbjct: 182 TTMISGYASKQMAKEALGVFGLMRLVEGNLNEFVFTSVLSALVCPEFVDSGKQVHCVVVK 241

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G      V NALV+MY + G ++Y   +FE  + +++++W+AL + +       + L++
Sbjct: 242 NGVLEFVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITGYSQAGDSHKALKL 301

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M   GF P+  T + +LKACS ++ +  GKQ H + +K   +      T+LVDMY K
Sbjct: 302 FSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAK 361

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G   DA   FD L   DL  +T+II  Y Q G+ E AL  + +M++  I  NE T+AS 
Sbjct: 362 FGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASV 421

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L  CS +A L  G+ +H+  +K G   ++ + +AL  MYAKCGS+++   +F+    RD 
Sbjct: 422 LKACSNLAALEQGKQIHARTIKYGLGPELSIRSALSTMYAKCGSLEEGVLIFRRMLQRDI 481

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SWN MI G  ++G G +ALE F  M  EG  PD ITFV VLSACSHMG+++ G  +F+ 
Sbjct: 482 VSWNAMISGLSQNGHGREALELFEEMRLEGTKPDHITFVTVLSACSHMGIVKRGWAYFNM 541

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +   + + P ++H+ACM+D+L RAGK  E + FI    +     +W  LL AC  H N E
Sbjct: 542 MFDEFCLVPRVEHYACMVDVLSRAGKLNEAKEFIESAIIDHGMCLWRILLPACRNHCNYE 601

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           L     EKL+EL  +  S YV  S I    GR  D   VR ++  +G++KE  CSWIE+
Sbjct: 602 LGAYAGEKLMELGSRESSAYVLLSSIYTAMGRLADVVRVRRMMKVRGVRKETGCSWIEL 660



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 150/525 (28%), Positives = 251/525 (47%), Gaps = 17/525 (3%)

Query: 53  SLSTVLKGFANSGYIKAGQVVHAMAIRLGCALD-KFLSCSLVDMYSKCGLADNALKVFYR 111
           S   +L  +A+   +K GQ++HA  I++       +L+ +L+  Y+KCG    A  VF  
Sbjct: 9   SFYNLLIQYADQKSLKKGQILHAHIIKIPYLSSCNYLANNLIKFYAKCGHLHGAKLVFEN 68

Query: 112 IKDPDVVAWGAIITCLDQQGC--CQEAAKIFNLMRESSVKPNQFVLTSLVRATT-ETGDQ 168
           +K  +VV++  +I  L   G        ++F  M  +++ P+      +  A     G  
Sbjct: 69  LKHKNVVSYNCLIHGLSHNGSKGSNFVLELFRRMIANNILPDAHTFPGVFTAAALNLGCN 128

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228
                +H +  K     D  VG++LV+ Y + G V    ++F+ +  ++ VSW  + S +
Sbjct: 129 FDARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGY 188

Query: 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH 288
              +   + L +F  M L     N   F  +L A      V  GKQ+H   +K+ +    
Sbjct: 189 ASKQMAKEALGVFGLMRLVEGNLNEFVFTSVLSALVCPEFVDSGKQVHCVVVKNGVLEFV 248

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
            V  +LV MY K G L  + + F+  ++K+   ++A+IT Y+QAG++  ALK F KM   
Sbjct: 249 SVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITGYSQAGDSHKALKLFSKMHYA 308

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
           G   +EFTL   L  CS VA +  G+  H   +K+G+   ++ +TALV MYAK G   DA
Sbjct: 309 GFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDA 368

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
              F      D   W  +I GYV++G  E+AL  +  M     +P+E+T   VL ACS++
Sbjct: 369 RKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNL 428

Query: 469 GLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWE 527
             +E+GK+ H  +IK  YG+ P +   + +  +  + G   E    I    L  + + W 
Sbjct: 429 AALEQGKQIHARTIK--YGLGPELSIRSALSTMYAKCGSLEE-GVLIFRRMLQRDIVSWN 485

Query: 528 NLLGACSWHGN----IELDEKDAEKLLELEPKMESNYVFPSDISA 568
            ++   S +G+    +EL E+     + LE     +  F + +SA
Sbjct: 486 AMISGLSQNGHGREALELFEE-----MRLEGTKPDHITFVTVLSA 525


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/598 (35%), Positives = 330/598 (55%), Gaps = 8/598 (1%)

Query: 5   KRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANS 64
           +RVF  M + +VVSWN+LL GY+ +    +V  LFC M+    +   +++STV+   AN 
Sbjct: 157 RRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQ 216

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
           G +  G  +HA+ ++LG   ++ +  SL+ M SK G+  +A  VF  +++ D V+W ++I
Sbjct: 217 GAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMI 276

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
                 G   EA + FN M+ +  KP      S++++     +      +H    K G  
Sbjct: 277 AGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLS 336

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAH--QDSVSWNALFSRFQDYESPDQGLRIFY 242
           ++  V  AL+    +   +     +F ++ H  Q  VSW A+ S +      DQ + +F 
Sbjct: 337 TNQNVLTALMVALTKCKEIDDAFSLF-SLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFS 395

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            M  +G KPN  T+  IL    ++    F  ++HA  IK + + +  VGT+L+D + K G
Sbjct: 396 LMRREGVKPNHFTYSTIL----TVQHAVFISEIHAEVIKTNYEKSSSVGTALLDAFVKIG 451

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            + DA   F+ +  KD+ A++A++  YAQAGE E A K F ++  EGIK NEFT  S +N
Sbjct: 452 NISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIIN 511

Query: 363 GCS-PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
            C+ P A++  G+  H+ A+K      + VS++LV +YAK G+I+ A  +FK    RD  
Sbjct: 512 ACTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLV 571

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SWN MI GY +HG  +KALE F  M       D ITF+ V+SAC+H GL+ +G+ +F+ +
Sbjct: 572 SWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIM 631

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
              + I PT++H++CMID+  RAG   +  + I      P A VW  +L A   H NIEL
Sbjct: 632 INDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATVWRIVLAASRVHRNIEL 691

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            +  AEK++ LEP+  + YV  S+I A  G W++   VR L+  + +KKEP  SWIEV
Sbjct: 692 GKLAAEKIISLEPQHSAAYVLLSNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWIEV 749



 Score =  238 bits (607), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 157/562 (27%), Positives = 276/562 (49%), Gaps = 23/562 (4%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
             A+++F   P  ++   N LL  Y+     Q+ +HLF S+         +++S VL   
Sbjct: 53  RFAQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVC 112

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           A S     G+ VH   ++ G      +  SLVDMY+K G   +  +VF  + D DVV+W 
Sbjct: 113 AGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWN 172

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           +++T         +  ++F LM+    +P+ + +++++ A    G    G  IHA++ K 
Sbjct: 173 SLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKL 232

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           GFE++ LV N+L+SM  ++G +     VF+ + ++DSVSWN++ +         +    F
Sbjct: 233 GFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETF 292

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
             M L G KP   TF  ++K+C+SL ++G  + LH  T+K  L  N  V T+L+    K 
Sbjct: 293 NNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKC 352

Query: 302 GCLEDAGVAFDSLAN-KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
             ++DA   F  +   + + ++TA+I+ Y Q G+ + A+  F  MR EG+K N FT ++ 
Sbjct: 353 KEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTI 412

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L     V        +H+  +KT +     V TAL+  + K G+I DA  VF+    +D 
Sbjct: 413 LTVQHAVFISE----IHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDV 468

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS-HMGLIEEGKKHFS 479
            +W+ M+ GY + G  E+A + F  +  EG  P+E TF  +++AC+     +E+GK+  +
Sbjct: 469 IAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHA 528

Query: 480 SIKKIYGITPTIKHFAC----MIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
                Y I   + +  C    ++ +  + G            K   + + W +++   + 
Sbjct: 529 -----YAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQK-ERDLVSWNSMISGYAQ 582

Query: 536 HGNIELDEKDAEKLLELEPKME 557
           HG        A+K LE+  +M+
Sbjct: 583 HG-------QAKKALEVFEEMQ 597



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 138/522 (26%), Positives = 243/522 (46%), Gaps = 15/522 (2%)

Query: 52  FSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADN----ALK 107
            +L+  L+   N+       ++     +L C  +  L   +V + ++  L D+    A +
Sbjct: 1   MTLNMTLRALTNTS---TNPILRIRRYQLHCHANPLLQSHVVALNARTLLRDSDPRFAQQ 57

Query: 108 VFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD 167
           +F +    D+     ++    +    QEA  +F  +  S + P+ + ++ ++     + +
Sbjct: 58  LFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAGSFN 117

Query: 168 QRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR 227
              GE +H    K G      VGN+LV MY + G V  G RVF+ +  +D VSWN+L + 
Sbjct: 118 GTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTG 177

Query: 228 FQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGN 287
           +      DQ   +F  M ++G++P+  T   ++ A ++   V  G Q+HA  +K   +  
Sbjct: 178 YSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETE 237

Query: 288 HVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL 347
            +V  SL+ M  KSG L DA V FD++ NKD  ++ ++I  +   G+   A + F  M+L
Sbjct: 238 RLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQL 297

Query: 348 EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
            G K    T AS +  C+ +  L   R+LH   +K+G   +  V TAL+    KC  IDD
Sbjct: 298 AGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDD 357

Query: 408 AEAVFK-GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
           A ++F     ++   SW  MI GY+++G  ++A+  F +M  EG  P+  T+  +L+   
Sbjct: 358 AFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTV-Q 416

Query: 467 HMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVW 526
           H   I E   H   IK  Y  + ++     ++D   + G  ++    + E   T + + W
Sbjct: 417 HAVFISE--IHAEVIKTNYEKSSSVG--TALLDAFVKIGNISDAVK-VFELIETKDVIAW 471

Query: 527 ENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISA 568
             +L   +  G  E   K   +L   E    + + F S I+A
Sbjct: 472 SAMLAGYAQAGETEEAAKIFHQLTR-EGIKPNEFTFCSIINA 512



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 65/128 (50%), Gaps = 6/128 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  +FK   E ++VSWN++++GYA+ G  +K + +F  M+    +    +   V+  
Sbjct: 555 IESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISA 614

Query: 61  FANSGYIKAGQVVHAMAI---RLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPD 116
            A++G +  GQ    + I    +   ++ + SC ++D+YS+ G+   A+ +   +   P 
Sbjct: 615 CAHAGLVGKGQNYFNIMINDHHINPTMEHY-SC-MIDLYSRAGMLGKAMDIINGMPFPPA 672

Query: 117 VVAWGAII 124
              W  ++
Sbjct: 673 ATVWRIVL 680


>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
          Length = 787

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/599 (33%), Positives = 319/599 (53%), Gaps = 29/599 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A ++F  MPE N +S+  L+ GYAES    + + LF  +     + + F  +T+LK   +
Sbjct: 92  ASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVS 151

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
               + G  +HA   +LG   + F+  +L+D YS CG  D A +VF  I   D+V+W  +
Sbjct: 152 MDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGM 211

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +TC  +  C +EA K+F+ MR    KPN F   S+ +A         G+S+H    K  +
Sbjct: 212 VTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRY 271

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E D  VG AL+ +Y ++G +      FE I  +D + W+ + +R+   +   + + +F+Q
Sbjct: 272 ELDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQ 331

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M      PN  TF  +L+AC+++  +  G Q+H H IK  L  +  V  +L+D+Y K G 
Sbjct: 332 MRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGR 391

Query: 304 LEDAGVAF-DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
           +E++   F +S    D+  +  +I  + Q G+ E AL+ F  M    +++ E T +S L 
Sbjct: 392 MENSMXLFAESPHRNDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALR 451

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+ +A L  G  +HS+ VKT    D+ V+ AL+ MYAKCGSI DA  VF     +D  S
Sbjct: 452 ACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVS 511

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN MI GY  HGL                            AC++ GL+++G+ +F+S+ 
Sbjct: 512 WNAMISGYSMHGL----------------------------ACANAGLLDQGQAYFTSMI 543

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           + +GI P I+H+ CM+ +LGR G   +    I E    P+ +VW  LLGAC  H +IEL 
Sbjct: 544 QDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELG 603

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
              A+ +LE+EP+ ++ +V  S++ AT  RW++ + VR  +  +G+KKEP  SWIE  G
Sbjct: 604 RISAQHVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQG 662



 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 146/492 (29%), Positives = 250/492 (50%), Gaps = 5/492 (1%)

Query: 48  KFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALK 107
           +F+  + +  L+          G+ +H   ++ G  LD F    L++MY K     +A K
Sbjct: 35  EFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASK 94

Query: 108 VFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD 167
           +F  + + + +++  +I    +     EA ++F  +     + N FV T++++       
Sbjct: 95  LFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSMDC 154

Query: 168 QRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR 227
              G  IHA I K G ES+  VG AL+  Y   GRV     VF+ I ++D VSW  + + 
Sbjct: 155 GELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTC 214

Query: 228 FQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGN 287
           F + +   + L++F QM + GFKPN  TF  + KAC  L     GK +H   +K   + +
Sbjct: 215 FAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELD 274

Query: 288 HVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL 347
             VG +L+D+Y KSG ++DA  AF+ +  KD+  ++ +I  YAQ+ +++ A++ F +MR 
Sbjct: 275 LYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQ 334

Query: 348 EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
             +  N+FT AS L  C+ +  L  G  +H   +K G   D+FVS AL+ +YAKCG +++
Sbjct: 335 ALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMEN 394

Query: 408 AEAVFKGSALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
           +  +F  S  R D   WN +I G+V+ G GEKAL  F  ML+      E+T+   L AC+
Sbjct: 395 SMXLFAESPHRNDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACA 454

Query: 467 HMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV 525
            +  +E G + H  ++K  +     + +   +ID+  + G   +    + +     + + 
Sbjct: 455 SLAALEPGLQIHSLTVKTTFDKDIVVTN--ALIDMYAKCGSIKD-ARLVFDLMNKQDEVS 511

Query: 526 WENLLGACSWHG 537
           W  ++   S HG
Sbjct: 512 WNAMISGYSMHG 523



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 177/336 (52%), Gaps = 1/336 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +++A+ VF  +   ++VSW  ++  +AE+   ++ + LF  M+ +  K + F+ ++V K 
Sbjct: 190 VDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKA 249

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                    G+ VH  A++    LD ++  +L+D+Y+K G  D+A   F  I   DV+ W
Sbjct: 250 CLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIPW 309

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I    Q    +EA ++F  MR++ V PNQF   S+++A         G  IH  + K
Sbjct: 310 SFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIK 369

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS-WNALFSRFQDYESPDQGLR 239
            G  SD  V NAL+ +Y + GR+     +F    H++ V+ WN +          ++ LR
Sbjct: 370 IGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVIVGHVQLGDGEKALR 429

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F  ML    +    T+   L+AC+SL+ +  G Q+H+ T+K + D + VV  +L+DMY 
Sbjct: 430 LFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYA 489

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEA 335
           K G ++DA + FD +  +D  ++ A+I+ Y+  G A
Sbjct: 490 KCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLA 525


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/596 (33%), Positives = 338/596 (56%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R+F +M   + VS+N+L++G  + G   + + LF  M+    K    +++++L   A+
Sbjct: 315 AERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACAS 374

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G +  G  +H+ AI+ G + D  L  SL+D+YSKC   + A K F   +  ++V W  +
Sbjct: 375 VGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVM 434

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    Q     ++ +IF  M+   + PNQF   S++R  T  G    GE IH  + K GF
Sbjct: 435 LVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGF 494

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           + +  V + L+ MY + G+++   R+   +   D VSW A+ + +  ++   + L++F +
Sbjct: 495 QLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEE 554

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +G + +   F   + AC+ +  +  G+Q+HA +       +  +  +L+ +Y + G 
Sbjct: 555 MEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGR 614

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +++A +AF+ + +K+  ++ ++++  AQ+G  E AL+ F +M     + N FT  S ++ 
Sbjct: 615 IQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISA 674

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
            + +A +  G+ +HS+ +KTG+  +  VS +L+++YAK GSI DA   F   + R+  SW
Sbjct: 675 AASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISW 734

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N MI GY +HG G +AL  F  M   G +P+ +TFV VLSACSH+GL++EG  +F S+ K
Sbjct: 735 NAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFK 794

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
           I+ + P  +H+ C++D+LGRAG+      +I E  +  +A++W  LL AC  H NIE+ E
Sbjct: 795 IHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGE 854

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           + A  LLELEP+  + YV  S+I A   +W      R L+  +G+KKEP  SWIEV
Sbjct: 855 RAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDRGVKKEPGRSWIEV 910



 Score =  248 bits (634), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 160/543 (29%), Positives = 274/543 (50%), Gaps = 13/543 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK---- 59
           A +VF      +V SWN +++ +       +V  LF  M       + ++ + VLK    
Sbjct: 112 AVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVG 171

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           G     Y+K    VH+     G      ++  L+D+YSK G  ++A KVF  I   D+V 
Sbjct: 172 GDIAFNYVKQ---VHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVT 228

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W A+I+ L Q G  +EA  +F  M  S + P  +VL+S++ A+T+      GE +H ++ 
Sbjct: 229 WVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVI 288

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K+GF S+T V N LV++Y  + ++    R+F  +  +D VS+N+L S        D+ L 
Sbjct: 289 KWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALE 348

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F +M     KP+  T   +L AC+S+  +  G QLH+H IK  +  + ++  SL+D+Y 
Sbjct: 349 LFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYS 408

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K   +E A   F +   +++  +  ++ +Y Q      + + FR+M++EG+  N+FT  S
Sbjct: 409 KCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPS 468

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L  C+ +  L  G  +H+  +KTG  L+++V + L+ MYAK G +  A  + +     D
Sbjct: 469 ILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDD 528

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HF 478
             SW  MI GYV+H +  +AL+ F  M   G   D I F   +SAC+ +  + +G++ H 
Sbjct: 529 VVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHA 588

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKL-TPNALVWENLLGACSWHG 537
            S    +G   +I +   +I +  R G+  E   ++   K+   N + W +L+   +  G
Sbjct: 589 QSYAAGFGADLSINN--ALISLYARCGRIQEA--YLAFEKIGDKNNISWNSLVSGLAQSG 644

Query: 538 NIE 540
             E
Sbjct: 645 YFE 647



 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 153/591 (25%), Positives = 285/591 (48%), Gaps = 17/591 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E AK+VF  +   ++V+W A+++G +++G  ++ + LFC M   E   + + LS+VL  
Sbjct: 211 IESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSA 270

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                  + G+ +H + I+ G   + ++   LV +YS+     +A ++F  +   D V++
Sbjct: 271 STKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSY 330

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I+ L QQG    A ++F  M+   +KP+   + SL+ A    G    G  +H+   K
Sbjct: 331 NSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIK 390

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G  +D ++  +L+ +Y +   V    + F     ++ V WN +   +   ++      I
Sbjct: 391 AGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEI 450

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QM ++G  PN  T+  IL+ C+SL  +  G+Q+H H IK     N  V + L+DMY K
Sbjct: 451 FRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAK 510

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L  A      L   D+ ++TA+I  Y Q      AL+ F +M   GI+ +    AS 
Sbjct: 511 YGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASA 570

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           ++ C+ +  L  G+ +H+ +   G   D+ ++ AL+++YA+CG I +A   F+    ++ 
Sbjct: 571 ISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNN 630

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SWN ++ G  + G  E+AL+ F  ML      +  T+   +SA + +  I++G++  S 
Sbjct: 631 ISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSM 690

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + K  G     +    +I +  ++G  ++      +     N + W  ++   S HG   
Sbjct: 691 VLKT-GYDSEREVSNSLISLYAKSGSISDAWREFNDMS-ERNVISWNAMITGYSQHGC-- 746

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
                  + L L  +M+   + P+ ++        F GV +  S  G+ KE
Sbjct: 747 -----GMEALRLFEEMKVCGIMPNHVT--------FVGVLSACSHIGLVKE 784



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 126/472 (26%), Positives = 227/472 (48%), Gaps = 21/472 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A + F +    N+V WN +L  Y +  +      +F  M+      ++F+  ++L+ 
Sbjct: 413 VETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRT 472

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             + G +  G+ +H   I+ G  L+ ++   L+DMY+K G    AL++  R+ + DVV+W
Sbjct: 473 CTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSW 532

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    Q     EA ++F  M    ++ +     S + A       R G+ IHA    
Sbjct: 533 TAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYA 592

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GF +D  + NAL+S+Y   GR+      FE I  ++++SWN+L S        ++ L++
Sbjct: 593 AGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQV 652

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +ML    + NM T+   + A +SL+++  G+Q+H+  +K   D    V  SL+ +Y K
Sbjct: 653 FVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAK 712

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
           SG + DA   F+ ++ +++ ++ A+IT Y+Q G    AL+ F +M++ GI  N  T    
Sbjct: 713 SGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGV 772

Query: 361 LNGCSPVATLANGR-------LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
           L+ CS +  +  G         +H +  K+ H +       +V +  + G +D A    K
Sbjct: 773 LSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYV------CVVDLLGRAGQLDRAMEYIK 826

Query: 414 GSAL-RDTASWNMMIGGYVKHG---LGEKALEAFRMMLDEGYVPDEITFVVV 461
              +  D   W  ++   V H    +GE+A      +  E    D  T+V++
Sbjct: 827 EMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPE----DSATYVLI 874



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 139/543 (25%), Positives = 241/543 (44%), Gaps = 25/543 (4%)

Query: 57  VLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD 116
           +L+G   SG +     +H    + G   +  L  SLVD Y + G    A+KVF    +  
Sbjct: 64  LLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRS 123

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG--ESI 174
           V +W  +I     Q    +   +F  M    + PN +    +++A    GD      + +
Sbjct: 124 VFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACV-GGDIAFNYVKQV 182

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H+    YGF+S  LV N L+ +Y +NG +    +VF  I  +D V+W A+ S        
Sbjct: 183 HSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLE 242

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
           ++ + +F  M      P       +L A + +     G+QLH   IK        V   L
Sbjct: 243 EEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGL 302

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           V +Y +S  L  A   F ++ ++D  +Y ++I+   Q G ++ AL+ F KM+ + +K + 
Sbjct: 303 VALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDC 362

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            T+AS L+ C+ V  L  G  LHS A+K G   D+ +  +L+ +Y+KC  ++ A   F  
Sbjct: 363 ITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLT 422

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
           +   +   WN+M+  Y +      + E FR M  EG +P++ T+  +L  C+ +G +  G
Sbjct: 423 TETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLG 482

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
           ++  + + K  G    +   + +ID+  + G+   +   I       + + W  ++    
Sbjct: 483 EQIHTHVIKT-GFQLNVYVCSVLIDMYAKYGQLA-LALRILRRLPEDDVVSWTAMIAGYV 540

Query: 535 WHGNIELDEKDAEKLLELEPKME------SNYVFPSDISATQGRWNDFSGVRALLSSQGI 588
            H           + L+L  +ME       N  F S ISA        +G+RAL   Q I
Sbjct: 541 QHDMF-------SEALQLFEEMEYRGIQFDNIGFASAISAC-------AGIRALRQGQQI 586

Query: 589 KKE 591
             +
Sbjct: 587 HAQ 589



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 121/430 (28%), Positives = 209/430 (48%), Gaps = 8/430 (1%)

Query: 138 KIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMY 197
           ++ N M E  V+ N      L+     +G       +H  I K GF+ + L+ ++LV  Y
Sbjct: 44  QLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNY 103

Query: 198 MENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFI 257
             +G      +VF+  +++   SWN +   F   +S  Q   +F +ML +G  PN  TF 
Sbjct: 104 FRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFA 163

Query: 258 VILKACSSLSDVGFG--KQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
            +LKAC    D+ F   KQ+H+ T  +  D + +V   L+D+Y K+G +E A   F+ + 
Sbjct: 164 GVLKACVG-GDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCIC 222

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRL 375
            KD+  + A+I+  +Q G  E A+  F  M    I    + L+S L+  + +     G  
Sbjct: 223 MKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQ 282

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           LH + +K G   + +V   LVA+Y++   +  AE +F     RD  S+N +I G V+ G 
Sbjct: 283 LHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGF 342

Query: 436 GEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHF 494
            ++ALE F  M  +   PD IT   +LSAC+ +G + +G + H  +IK   G++  I   
Sbjct: 343 SDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKA--GMSADIILE 400

Query: 495 ACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEP 554
             ++D+  +         F   T+ T N ++W  +L A     N+  D  +  + +++E 
Sbjct: 401 GSLLDLYSKCADVETAHKFFLTTE-TENIVLWNVMLVAYGQLDNLS-DSFEIFRQMQMEG 458

Query: 555 KMESNYVFPS 564
            + + + +PS
Sbjct: 459 MIPNQFTYPS 468



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 140/323 (43%), Gaps = 12/323 (3%)

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           +G + N   ++ +L+ C +   +    +LH    K   DG  ++  SLVD Y + G    
Sbjct: 52  RGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHG 111

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A   FD  +N+ +F++  +I  +            FR+M  EGI  N +T A  L  C  
Sbjct: 112 AVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVG 171

Query: 367 VATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
                N  + +HS     G      V+  L+ +Y+K G I+ A+ VF    ++D  +W  
Sbjct: 172 GDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVA 231

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKI 484
           MI G  ++GL E+A+  F  M      P       VLSA + + L E G++ H   IK  
Sbjct: 232 MISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIK-- 289

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEK 544
           +G          ++ +  R+ K    E  I  T  + + + + +L+      G       
Sbjct: 290 WGFHSETYVCNGLVALYSRSRKLISAER-IFSTMNSRDGVSYNSLISGLVQQGF------ 342

Query: 545 DAEKLLELEPKMESNYVFPSDIS 567
            +++ LEL  KM+ + + P  I+
Sbjct: 343 -SDRALELFTKMQRDCLKPDCIT 364


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/611 (34%), Positives = 330/611 (54%), Gaps = 11/611 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKD---MEKKFSKFSLSTV 57
           ++ AK ++  + E N V+ N L+ G  +   G+    +F   +D   +        LS +
Sbjct: 329 LDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIFMGARDSAAVNVDTYVVLLSAI 388

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCALDKF-LSCSLVDMYSKCGLADNALKVFYRIKDPD 116
            +       ++ G+ VHA  +R G    K  +S  LV+MY+KCG  D A +VF  ++  D
Sbjct: 389 AEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARD 448

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
            ++W  IIT LDQ G C+ A   + LMR++S+ P+ F   S + +    G    G+ +H 
Sbjct: 449 RISWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHC 508

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP-D 235
              K+G   DT V NALV MY E GR+S    +F +++  D VSWN++       ++P  
Sbjct: 509 DAVKWGLYLDTSVSNALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMASSQAPIT 568

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
           + +++F  M+  G  PN  TF+  L A + LS +  GKQ+H+  +KH +  ++ V  +L+
Sbjct: 569 ESVQVFSNMMKSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVMLKHGVTEDNAVDNALM 628

Query: 296 DMYDKSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
             Y KSG ++     F  ++  +D  ++ ++I+ Y   G  + A+ C   M       + 
Sbjct: 629 SCYAKSGDVDSCERLFSRMSGRRDAISWNSMISGYIYNGHLQEAMDCVCLMMHSEQMMDH 688

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            T +  LN C+ VA L  G  +H+  +++    D+ V +ALV MY+KCG ID A  VF  
Sbjct: 689 CTFSIVLNACASVAALERGMEMHAFGLRSHLESDVVVESALVDMYSKCGRIDYASKVFHS 748

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
            + ++  SWN MI GY +HGLG KALE F  M + G  PD +TFV VLSACSH GL+E G
Sbjct: 749 MSQKNEFSWNSMISGYARHGLGRKALEIFEEMQESGESPDHVTFVSVLSACSHAGLVERG 808

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
             +F  ++  YGI P I+H++C+ID+LGRAG+  +I+ ++    + PN L+W  +L AC 
Sbjct: 809 LDYFELMED-YGILPRIEHYSCVIDLLGRAGELDKIQEYMKRMPMKPNTLIWRTVLVACQ 867

Query: 535 W---HGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
                  I+L  + +  LLELEP+   NYV  S   A  GRW D +  RA +    +KKE
Sbjct: 868 QSKHRAKIDLGTEASRMLLELEPQNPVNYVLSSKFHAAIGRWEDTAKARAAMKGAAVKKE 927

Query: 592 PSCSWIEV-DG 601
              SW+ + DG
Sbjct: 928 AGRSWVTLTDG 938



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 152/588 (25%), Positives = 286/588 (48%), Gaps = 36/588 (6%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM---------KDMEKKFSKFS 53
           LA+RVF + P  ++++WNAL++ YA+ GD      LF +M         +  E  F    
Sbjct: 225 LAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAMQYDDSGIELRPTEHTFGSLI 284

Query: 54  LSTVLK----GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF 109
            +T L     G  +  +++         ++ GC+ D ++  +LV  +++ G+ D A  ++
Sbjct: 285 TATYLSSCSLGLLDQLFVRV--------LKSGCSSDLYVGSALVSAFARHGMLDEAKDIY 336

Query: 110 YRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRES-SVKPNQFV--LTSLVRATTETG 166
             +K+ + V    +I  L +Q   + AA+IF   R+S +V  + +V  L+++   +T   
Sbjct: 337 LGLKERNAVTLNGLIAGLVKQQHGEAAAEIFMGARDSAAVNVDTYVVLLSAIAEFSTAEQ 396

Query: 167 DQRCGESIHAVICKYG-FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALF 225
             R G  +HA + + G       V N LV+MY + G +    RVF+ +  +D +SWN + 
Sbjct: 397 GLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTII 456

Query: 226 SRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLD 285
           +        +  +  +  M      P+    I  L +C+ L  +  G+QLH   +K  L 
Sbjct: 457 TALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLY 516

Query: 286 GNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI--ITSYAQAGEAEMALKCFR 343
            +  V  +LV MY + G + +    F+S++  D+ ++ +I  + + +QA   E +++ F 
Sbjct: 517 LDTSVSNALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMASSQAPITE-SVQVFS 575

Query: 344 KMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403
            M   G+  N+ T  + L   +P++ L  G+ +HS+ +K G   D  V  AL++ YAK G
Sbjct: 576 NMMKSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSG 635

Query: 404 SIDDAEAVF-KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVL 462
            +D  E +F + S  RD  SWN MI GY+ +G  ++A++   +M+    + D  TF +VL
Sbjct: 636 DVDSCERLFSRMSGRRDAISWNSMISGYIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVL 695

Query: 463 SACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPN 522
           +AC+ +  +E G +  +   + +  +  +   A ++D+  + G+  +  + +  +    N
Sbjct: 696 NACASVAALERGMEMHAFGLRSHLESDVVVESA-LVDMYSKCGRI-DYASKVFHSMSQKN 753

Query: 523 ALVWENLLGACSWHGNIELDEKDAEKLLELEPKMES--NYVFPSDISA 568
              W +++   + HG   L  K  E   E++   ES  +  F S +SA
Sbjct: 754 EFSWNSMISGYARHG---LGRKALEIFEEMQESGESPDHVTFVSVLSA 798



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 146/567 (25%), Positives = 266/567 (46%), Gaps = 39/567 (6%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM--KDMEKKFSKFSLSTVL 58
           ++ A+RVF  MP  N VSW  L++G+  SG  +    LF +M  +    + + F+  +VL
Sbjct: 116 LDAARRVFDGMPGRNAVSWTCLISGHVLSGLPEDAFPLFRAMLREGPGCRPTSFTFGSVL 175

Query: 59  KGFANSGYIKAGQV--VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNAL--KVFYRIKD 114
           +   +SG  + G    VH +  +     +  +  +L+ MY  C +    L  +VF     
Sbjct: 176 RACQDSGPDRLGFAVQVHGLVSKTEFTSNTTVCNALISMYGSCSVGPPILAQRVFDTTPV 235

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESS-------VKPNQFVLTSLVRATTETGD 167
            D++ W A+++   ++G   +A   F L R          ++P +    SL+ AT  +  
Sbjct: 236 RDLITWNALMSVYAKRG---DAICTFTLFRAMQYDDSGIELRPTEHTFGSLITATYLSS- 291

Query: 168 QRCG----ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNA 223
             C     + +   + K G  SD  VG+ALVS +  +G +     ++  +  +++V+ N 
Sbjct: 292 --CSLGLLDQLFVRVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLGLKERNAVTLNG 349

Query: 224 LFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLS--DVGF--GKQLHAHT 279
           L +     +  +    IF          N+ T++V+L A +  S  + G   G+++HAH 
Sbjct: 350 LIAGLVKQQHGEAAAEIFMGA-RDSAAVNVDTYVVLLSAIAEFSTAEQGLRKGREVHAHV 408

Query: 280 IKHSLDGNHV-----VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGE 334
           ++      H+     V   LV+MY K G ++ A   F  +  +D  ++  IIT+  Q G 
Sbjct: 409 LR----AGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTIITALDQNGY 464

Query: 335 AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA 394
            E A+  +  MR   I  + F   S L+ C+ +  LA G+ LH  AVK G  LD  VS A
Sbjct: 465 CEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYLDTSVSNA 524

Query: 395 LVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV-KHGLGEKALEAFRMMLDEGYVP 453
           LV MY +CG + +   +F   +  D  SWN ++G          ++++ F  M+  G VP
Sbjct: 525 LVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMASSQAPITESVQVFSNMMKSGLVP 584

Query: 454 DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENF 513
           +++TFV  L+A + + ++E GK+  S + K +G+T        ++    ++G     E  
Sbjct: 585 NKVTFVNFLAALTPLSVLELGKQIHSVMLK-HGVTEDNAVDNALMSCYAKSGDVDSCERL 643

Query: 514 ITETKLTPNALVWENLLGACSWHGNIE 540
            +      +A+ W +++    ++G+++
Sbjct: 644 FSRMSGRRDAISWNSMISGYIYNGHLQ 670



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 128/481 (26%), Positives = 221/481 (45%), Gaps = 27/481 (5%)

Query: 71  QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
           + +H   ++ G   D FL+  LV+ Y+K    D A +VF  +   + V+W  +I+     
Sbjct: 85  ESLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLS 144

Query: 131 GCCQEAAKIFN-LMRE-SSVKPNQFVLTSLVRATTETGDQRCGES--IHAVICKYGFESD 186
           G  ++A  +F  ++RE    +P  F   S++RA  ++G  R G +  +H ++ K  F S+
Sbjct: 145 GLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSN 204

Query: 187 TLVGNALVSMYMENGRVSYG-----SRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           T V NAL+SMY   G  S G      RVF+    +D ++WNAL S +           +F
Sbjct: 205 TTVCNALISMY---GSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLF 261

Query: 242 YQMLLKG----FKPNMCTFIVILKACS-SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
             M         +P   TF  ++ A   S   +G   QL    +K     +  VG++LV 
Sbjct: 262 RAMQYDDSGIELRPTEHTFGSLITATYLSSCSLGLLDQLFVRVLKSGCSSDLYVGSALVS 321

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
            + + G L++A   +  L  ++      +I    +    E A + F   R +    N  T
Sbjct: 322 AFARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIFMGAR-DSAAVNVDT 380

Query: 357 LASCLNGCSPVAT----LANGRLLHSIAVKTGHLL-DMFVSTALVAMYAKCGSIDDAEAV 411
               L+  +  +T    L  GR +H+  ++ GH+   + VS  LV MYAKCG+ID A  V
Sbjct: 381 YVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRV 440

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F+    RD  SWN +I    ++G  E A+  + +M      P     +  LS+C+ +GL+
Sbjct: 441 FQLMEARDRISWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLL 500

Query: 472 EEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
             G++ H  ++K  +G+         ++ + G  G+ +E    I  +    + + W +++
Sbjct: 501 AAGQQLHCDAVK--WGLYLDTSVSNALVKMYGECGRMSECWE-IFNSMSAHDVVSWNSIM 557

Query: 531 G 531
           G
Sbjct: 558 G 558


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/598 (33%), Positives = 323/598 (54%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AK +F  +P  + + WN +LNGY ++GD    +  F  M++   K +  S   +L   A 
Sbjct: 231 AKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCAT 290

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G ++AG  +H + IR G   D  ++ +++ MYSKCG   +A K+F  +   D V W  +
Sbjct: 291 RGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGL 350

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q G   EA  +F  M  S VK +     S + +  ++G  +  + +H+ I ++G 
Sbjct: 351 IAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVRHGV 410

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D  + +ALV +Y + G V    + F+     D     A+ S +       + L +F  
Sbjct: 411 PFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRW 470

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           ++ +G  PN  T   +L AC++L+ +  GK+LH   +K  L+    VG+S+  MY KSG 
Sbjct: 471 LIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILKKGLENVCQVGSSITYMYAKSGR 530

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L+ A   F  +  KD   +  +I S++Q G+ E+A+  FR+M   G K +  +L++ L+ 
Sbjct: 531 LDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSA 590

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+    L  G+ LH   V+   + D FV++ L+ MY+KCG +  A +VF     ++  SW
Sbjct: 591 CANYPALYYGKELHCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWKNEVSW 650

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I  Y  HG   + L+ F  M++ G  PD +TF+V++SAC H GL++EG  +F  + +
Sbjct: 651 NSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTFLVIMSACGHAGLVDEGIYYFRCMTE 710

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            YGI   ++HFACM+D+ GRAG+  E  + I     TP+A  W +LLGAC  HGN+EL +
Sbjct: 711 EYGICARMEHFACMVDLYGRAGRLHEAFDTIKSMPFTPDAGTWGSLLGACRLHGNVELAK 770

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
             ++ L+EL+P     YV  S++ A  G W     VR+L+  +G++K P  SWI+V+G
Sbjct: 771 LASKHLVELDPNNSGYYVLLSNVHAGAGEWESVLKVRSLMKEKGVQKIPGYSWIDVNG 828



 Score =  215 bits (547), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 139/521 (26%), Positives = 248/521 (47%), Gaps = 2/521 (0%)

Query: 17  VSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAM 76
           + WN L+ G++  G     +  F  M        K++   V+K       +   ++VH +
Sbjct: 143 LPWNWLIRGFSMLGCFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHEL 202

Query: 77  AIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEA 136
           A  +G  +D F+  SL+ +Y+  G   +A  +F  +   D + W  ++    + G    A
Sbjct: 203 ARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSA 262

Query: 137 AKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSM 196
              F  MR S VKPN      L+      G  R G  +H ++ + GFESD  V N +++M
Sbjct: 263 LGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITM 322

Query: 197 YMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTF 256
           Y + G +    ++F+ +   D+V+WN L + +      D+ + +F  M+  G K +  TF
Sbjct: 323 YSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITF 382

Query: 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
              L +      + + K++H++ ++H +  +  + ++LVD+Y K G +E A   F     
Sbjct: 383 ASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTL 442

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL 376
            D+   TA+I+ Y   G    AL  FR +  EG+  N  T+AS L  C+ +A+L  G+ L
Sbjct: 443 VDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKEL 502

Query: 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
           H   +K G      V +++  MYAK G +D A   F+   ++D+  WN+MI  + ++G  
Sbjct: 503 HCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKP 562

Query: 437 EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFAC 496
           E A++ FR M   G   D ++    LSAC++   +  GK+    + +   I+ T    + 
Sbjct: 563 ELAIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYGKELHCFVVRNSFISDTFVA-ST 621

Query: 497 MIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           +ID+  + GK   +   + +     N + W +++ A   HG
Sbjct: 622 LIDMYSKCGKLA-LARSVFDMMDWKNEVSWNSIIAAYGNHG 661



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 128/492 (26%), Positives = 228/492 (46%), Gaps = 7/492 (1%)

Query: 54  LSTVLKGFANSGYIKAGQVV---HAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFY 110
           L ++ + F NS      Q V   HA  +  G      L   ++ MY  C    +   +F 
Sbjct: 76  LESMFRAFPNSDASLVKQQVRQIHAKVLVCGMNGSLTLGSRMLGMYVLCRSFKDVGNLFC 135

Query: 111 RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC 170
           R++    + W  +I      GC   A   F  M  S+V P+++    +++A     +   
Sbjct: 136 RLQLCYSLPWNWLIRGFSMLGCFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPL 195

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
            + +H +    GF  D  +G++L+ +Y +NG +     +F+ +  +D + WN + + +  
Sbjct: 196 CKMVHELARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVK 255

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
               +  L  F +M     KPN  +F+ +L  C++   V  G QLH   I+   + +  V
Sbjct: 256 NGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTV 315

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
             +++ MY K G L DA   FD +   D   +  +I  Y Q G  + A+  F+ M   G+
Sbjct: 316 ANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGV 375

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
           K +  T AS L       +L   + +HS  V+ G   D+++ +ALV +Y K G ++ A  
Sbjct: 376 KLDSITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACK 435

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
            F+ + L D A    MI GYV +GL  +AL  FR ++ EG VP+ +T   VL AC+ +  
Sbjct: 436 TFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALAS 495

Query: 471 IEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENL 529
           ++ GK+ H   +KK  G+    +  + +  +  ++G+      F     +  +++ W  +
Sbjct: 496 LKLGKELHCDILKK--GLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVK-DSVCWNLM 552

Query: 530 LGACSWHGNIEL 541
           + + S +G  EL
Sbjct: 553 IVSFSQNGKPEL 564



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 156/316 (49%), Gaps = 6/316 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E+A + F+    ++V    A+++GY  +G   + ++LF  +       +  ++++VL  
Sbjct: 430 VEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPA 489

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    +K G+ +H   ++ G      +  S+  MY+K G  D A + F R+   D V W
Sbjct: 490 CAALASLKLGKELHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCW 549

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I    Q G  + A  +F  M  S  K +   L++ + A         G+ +H  + +
Sbjct: 550 NLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYGKELHCFVVR 609

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             F SDT V + L+ MY + G+++    VF+ +  ++ VSWN++ + + ++  P + L +
Sbjct: 610 NSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWKNEVSWNSIIAAYGNHGRPRECLDL 669

Query: 241 FYQMLLKGFKPNMCTFIVILKAC--SSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           F++M+  G +P+  TF+VI+ AC  + L D G        T ++ +         +VD+Y
Sbjct: 670 FHEMVEAGIQPDHVTFLVIMSACGHAGLVDEGI-YYFRCMTEEYGICARMEHFACMVDLY 728

Query: 299 DKSGCLEDAGVAFDSL 314
            ++G L +   AFD++
Sbjct: 729 GRAGRLHE---AFDTI 741



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 106/229 (46%), Gaps = 6/229 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++LA + F+ MP  + V WN ++  ++++G  +  + LF  M     KF   SLS  L  
Sbjct: 531 LDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSA 590

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            AN   +  G+ +H   +R     D F++ +L+DMYSKCG    A  VF  +   + V+W
Sbjct: 591 CANYPALYYGKELHCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWKNEVSW 650

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC- 179
            +II      G  +E   +F+ M E+ ++P+      ++ A    G     E I+   C 
Sbjct: 651 NSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTFLVIMSACGHAG--LVDEGIYYFRCM 708

Query: 180 --KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH-QDSVSWNALF 225
             +YG  +       +V +Y   GR+       +++    D+ +W +L 
Sbjct: 709 TEEYGICARMEHFACMVDLYGRAGRLHEAFDTIKSMPFTPDAGTWGSLL 757


>gi|222626149|gb|EEE60281.1| hypothetical protein OsJ_13335 [Oryza sativa Japonica Group]
          Length = 1135

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/596 (33%), Positives = 326/596 (54%), Gaps = 9/596 (1%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           +F  MP  NVV+W ++++GY  +G  +  + +F  M +     + F+ +  L   A+ G 
Sbjct: 70  LFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGA 129

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           ++AG+ VH++A+R G A D ++   L++MYS+CG    A +VF R+  PDVV + ++I+ 
Sbjct: 130 LRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISA 189

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA-VICKYGFES 185
             + G  + AA+    M +  +KPN+  +T+++ A         G+ IH  +I K G  S
Sbjct: 190 FCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRV----LGQQIHGYLIKKIGLRS 245

Query: 186 DTLVGN-ALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
            ++  + AL+  Y  NG       VF+++  ++ VSW ++   +      ++ L++F  M
Sbjct: 246 QSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDM 305

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
           + +G  PN     ++L AC S   +G G+QLH   IKH L  +  V  +L+ MY ++G +
Sbjct: 306 ISEGVDPNEFALSIVLGACGS---IGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLV 362

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
           E+     + + N DL ++T  I++  Q G  E A+    +M  EG   N +  +S L+ C
Sbjct: 363 EELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSC 422

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
           + VA+L  G   H +A+K G   ++    AL+ MY+KCG +  A   F      D  SWN
Sbjct: 423 ADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWN 482

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
            +I G+ +HG   KALE F  M   G  PD+ TF+ VL  C+H G++EEG+  F  +   
Sbjct: 483 SLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQ 542

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEK 544
           Y  TP   H+ACMID+LGR G+F E    I +    P+AL+W+ LL +C  H N+++ + 
Sbjct: 543 YSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKL 602

Query: 545 DAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
            A++L+EL  +  ++YV  S+I A  G W D   VR  +   G+KK+  CSWIE++
Sbjct: 603 AADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEIN 658



 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 150/495 (30%), Positives = 236/495 (47%), Gaps = 20/495 (4%)

Query: 75  AMAIRLGCA--LDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           A A   GCA   D  L C  ++   K G   +AL +F R+   +VVAW ++++   + G 
Sbjct: 35  AAAADNGCAESPDVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGR 94

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
            + A  +F  M ES V PN F   + + A  + G  R GE +H++  + GF  D  +G+ 
Sbjct: 95  PEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSC 154

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           L+ MY   G +     VF+ +   D V + +L S F      +       QML +G KPN
Sbjct: 155 LIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPN 214

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKH-SLDGNHVV-GTSLVDMYDKSGCLEDAGVA 310
             T   IL AC  +     G+Q+H + IK   L    V   T+L+D Y ++G  + A   
Sbjct: 215 EHTMTTILTACPRV----LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAV 270

Query: 311 FDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATL 370
           FDSL  K++ ++ +++  Y + G  E AL+ F  M  EG+  NEF L+  L  C  +   
Sbjct: 271 FDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGL- 329

Query: 371 ANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGY 430
             GR LH  A+K   + D+ VS AL++MY + G +++ EA+       D  SW   I   
Sbjct: 330 --GRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISAN 387

Query: 431 VKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT 490
            ++G GEKA+     M  EG+ P+   F  VLS+C+ +  +++G + F  +    G    
Sbjct: 388 FQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQ-FHCLALKLGCDSE 446

Query: 491 IKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLL 550
           I     +I++  + G+         +   T +   W +L+   + HG       DA K L
Sbjct: 447 ICTGNALINMYSKCGQMGSAR-LAFDVMHTHDVTSWNSLIHGHAQHG-------DANKAL 498

Query: 551 ELEPKMESNYVFPSD 565
           E+  KM SN + P D
Sbjct: 499 EVFSKMRSNGIKPDD 513



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 189/374 (50%), Gaps = 24/374 (6%)

Query: 162 TTETGDQRCGESIHAVI-CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS 220
           +    D  C ES   V+ CK             ++  +++GR++    +F+ +  ++ V+
Sbjct: 34  SAAAADNGCAESPDVVLECKR------------LNRLVKSGRLADALDLFDRMPRKNVVA 81

Query: 221 WNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTI 280
           W ++ S +     P+  L +F  M+  G  PN       L AC+ L  +  G+Q+H+  +
Sbjct: 82  WTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQVHSLAV 141

Query: 281 KHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALK 340
           +    G+  +G+ L++MY + G L  A   FD + + D+  YT++I+++ + GE E+A +
Sbjct: 142 RAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAE 201

Query: 341 CFRKMRLEGIKSNEFTLASCLNGCSPV-ATLANGRLLHSIAVKTGHLLDMFVSTALVAMY 399
              +M  +G+K NE T+ + L  C  V     +G L+  I +++     ++ STAL+  Y
Sbjct: 202 ALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIKKIGLRSQ---SVYSSTALIDFY 258

Query: 400 AKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFV 459
           ++ G    A+AVF     ++  SW  M+  Y++ G  E+AL+ F  M+ EG  P+E    
Sbjct: 259 SRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALS 318

Query: 460 VVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK 518
           +VL AC  +GL   G++ H S+IK  + +   I+    ++ + GR G   E+E  + + +
Sbjct: 319 IVLGACGSIGL---GRQLHCSAIK--HDLITDIRVSNALLSMYGRTGLVEELEAMLNKIE 373

Query: 519 LTPNALVWENLLGA 532
             P+ + W   + A
Sbjct: 374 -NPDLVSWTTAISA 386



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 172/388 (44%), Gaps = 39/388 (10%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           +LAK VF S+   NVVSW +++  Y   G  ++ + +F  M       ++F+LS VL   
Sbjct: 265 KLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGA- 323

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
              G I  G+ +H  AI+     D  +S +L+ MY + GL +    +  +I++PD+V+W 
Sbjct: 324 --CGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWT 381

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
             I+   Q G  ++A  +   M      PN +  +S++ +  +      G   H +  K 
Sbjct: 382 TAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKL 441

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G +S+   GNAL++MY + G++      F+ +   D  SWN+L      +   ++ L +F
Sbjct: 442 GCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVF 501

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTI-KHSLDGNHVVGTSLVDMYDK 300
            +M   G KP+  TF+ +L  C+    V  G+      I ++S          ++DM  +
Sbjct: 502 SKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGR 561

Query: 301 SGCLEDA-----GVAFDS------------------------------LANKDLFAYTAI 325
           +G  ++A      + F+                               L+++D  +Y  +
Sbjct: 562 NGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLM 621

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSN 353
              YA  GE E A K  R+M   G+K +
Sbjct: 622 SNIYAMHGEWEDARKVRRRMDETGVKKD 649



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 145/301 (48%), Gaps = 19/301 (6%)

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           KSG L DA   FD +  K++ A+T++++ Y + G  E AL  F  M   G+  N+F   +
Sbjct: 60  KSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNA 119

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L  C+ +  L  G  +HS+AV+ G   D ++ + L+ MY++CGS+  A+ VF      D
Sbjct: 120 ALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPD 179

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
              +  +I  + ++G  E A EA   ML +G  P+E T   +L+AC     +   + H  
Sbjct: 180 VVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPR---VLGQQIHGY 236

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
            IKKI   + ++     +ID   R G+F ++   + ++    N + W +++        +
Sbjct: 237 LIKKIGLRSQSVYSSTALIDFYSRNGEF-KLAKAVFDSLHCKNVVSWCSMM-------QL 288

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            + +   E+ L++   M S  V P++ +         S V     S G+ ++  CS I+ 
Sbjct: 289 YIRDGRLEEALQVFGDMISEGVDPNEFA--------LSIVLGACGSIGLGRQLHCSAIKH 340

Query: 600 D 600
           D
Sbjct: 341 D 341



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 4/127 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A+  F  M   +V SWN+L++G+A+ GD  K + +F  M+    K    +   VL G
Sbjct: 463 MGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMG 522

Query: 61  FANSGYIKAGQVVHAMAIRLG--CALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDV 117
             +SG ++ G++   + I            +C ++DM  + G  D AL++   +  +PD 
Sbjct: 523 CNHSGMVEEGELFFRLMIDQYSFTPAPSHYAC-MIDMLGRNGRFDEALRMINDMPFEPDA 581

Query: 118 VAWGAII 124
           + W  ++
Sbjct: 582 LIWKTLL 588


>gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1028

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/603 (35%), Positives = 332/603 (55%), Gaps = 6/603 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A +VF+++ E N V WNA++ GYA +G+  KVM LF  MK        F+ +++L  
Sbjct: 378 MEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLST 437

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A S  ++ G   H++ I+     + F+  +LVDMY+KCG  ++A ++F  + D D V+W
Sbjct: 438 CAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMCDRDNVSW 497

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             II    Q     EA  +F  M    +  +   L S ++A T       G+ +H +  K
Sbjct: 498 NTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQVHCLSVK 557

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G +     G++L+ MY + G +    +VF ++     VS NAL + +    + ++ + +
Sbjct: 558 CGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALIAGYSQ-NNLEEAVVL 616

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK--HSLDGNHVVGTSLVDMY 298
           F +ML KG  P+  TF  I++AC     +  G Q H   IK   S +G ++ G SL+ +Y
Sbjct: 617 FQEMLTKGVNPSEITFATIVEACHKPESLTLGTQFHGQIIKWGFSSEGEYL-GISLLGLY 675

Query: 299 DKSGCLEDAGVAFDSLAN-KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
             S  + +A   F  L++ K +  +T +++ ++Q G  E ALK +++MR +G   ++ T 
Sbjct: 676 MNSRRMAEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGALPDQATF 735

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
            + L  CS +++L  GR +HS+     H LD   S  L+ MYAKCG +  +  VF     
Sbjct: 736 VTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKSSSQVFDEMRR 795

Query: 418 R-DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
           R +  SWN +I GY K+G  E AL+ F  M     +PDEITF+ VL+ACSH G + +G+K
Sbjct: 796 RSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRK 855

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
            F  +   YGI   + H ACM+D+LGR G   E ++FI    L P+A +W +LLGAC  H
Sbjct: 856 IFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIH 915

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSW 596
           G+    E  AE+L+ELEP+  S YV  S+I A+QGRW + + +R  +  +G+KK P  SW
Sbjct: 916 GDDMRGEIAAERLIELEPQNSSAYVLLSNIYASQGRWEEANALRKAMRDRGVKKVPGYSW 975

Query: 597 IEV 599
           I+V
Sbjct: 976 IDV 978



 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 159/568 (27%), Positives = 279/568 (49%), Gaps = 15/568 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F  MP  +VV+WN +++G+ + G     +  F +M+    K ++ +L +VL     
Sbjct: 280 ARLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGI 339

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G VVHA AI+LG A + ++  SLV MYSKC   + A KVF  +++ + V W A+
Sbjct: 340 VANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAM 399

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I      G   +  ++F  M+ S    + F  TSL+     + D   G   H++I K   
Sbjct: 400 IRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKL 459

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             +  VGNALV MY + G +    ++FE +  +D+VSWN +   +   E+  +   +F +
Sbjct: 460 TKNLFVGNALVDMYAKCGALEDARQIFEHMCDRDNVSWNTIIGGYVQDENESEAFDLFMR 519

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G   +       LKAC+++  +  GKQ+H  ++K  LD     G+SL+DMY K G 
Sbjct: 520 MNSCGIVSDGACLASTLKACTNVHGLYQGKQVHCLSVKCGLDRVLHTGSSLIDMYSKCGI 579

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +EDA   F S+    + +  A+I  Y+Q    E A+  F++M  +G+  +E T A+ +  
Sbjct: 580 IEDARKVFSSMPEWSVVSMNALIAGYSQ-NNLEEAVVLFQEMLTKGVNPSEITFATIVEA 638

Query: 364 CSPVATLANGRLLHSIAVKTGHLLD-MFVSTALVAMYAKCGSIDDAEAVFKG-SALRDTA 421
           C    +L  G   H   +K G   +  ++  +L+ +Y     + +A A+F   S+ +   
Sbjct: 639 CHKPESLTLGTQFHGQIIKWGFSSEGEYLGISLLGLYMNSRRMAEACALFSELSSPKSIV 698

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
            W  M+ G+ ++G  E+AL+ ++ M  +G +PD+ TFV VL  CS +  + EG+   S  
Sbjct: 699 LWTGMMSGHSQNGFYEEALKFYKEMRHDGALPDQATFVTVLRVCSVLSSLREGRAIHS-- 756

Query: 482 KKIYGITPTIKHFA--CMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
             I+ +   +       +ID+  + G          E +   N + W +L+   + +G  
Sbjct: 757 -LIFHLAHDLDELTSNTLIDMYAKCGDMKSSSQVFDEMRRRSNVVSWNSLINGYAKNGY- 814

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDIS 567
                 AE  L++   M  +++ P +I+
Sbjct: 815 ------AEDALKIFDSMRQSHIMPDEIT 836



 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 173/606 (28%), Positives = 279/606 (46%), Gaps = 74/606 (12%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++ F S+ E +V +WN++L+ Y+  G   KV+  F S+ +     +KF+ S VL   A 
Sbjct: 114 AEKQFNSL-EKDVTAWNSMLSMYSSIGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSAR 172

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKC------------------------ 99
              ++ G+ +H   I++G   + +   +LVDMY+KC                        
Sbjct: 173 ETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCL 232

Query: 100 -------GLADNALKVFYRIK-----------------------------------DPDV 117
                  GL + A+ VF R++                                    PDV
Sbjct: 233 FSGYVKAGLPEEAVIVFERMRGEGHRPDHLAFVTVINTYISLGKLKDARLLFGEMPSPDV 292

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           VAW  +I+   ++GC   A + F  MR+SSVK  +  L S++ A     +   G  +HA 
Sbjct: 293 VAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAE 352

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
             K G  S+  VG++LVSMY +  ++   ++VFEA+  ++ V WNA+   +       + 
Sbjct: 353 AIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKV 412

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           + +F  M   G+  +  TF  +L  C+   D+  G Q H+  IK  L  N  VG +LVDM
Sbjct: 413 MELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDM 472

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K G LEDA   F+ + ++D  ++  II  Y Q      A   F +M   GI S+   L
Sbjct: 473 YAKCGALEDARQIFEHMCDRDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACL 532

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           AS L  C+ V  L  G+ +H ++VK G    +   ++L+ MY+KCG I+DA  VF     
Sbjct: 533 ASTLKACTNVHGLYQGKQVHCLSVKCGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMPE 592

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
               S N +I GY ++ L E+A+  F+ ML +G  P EITF  ++ AC     +  G + 
Sbjct: 593 WSVVSMNALIAGYSQNNL-EEAVVLFQEMLTKGVNPSEITFATIVEACHKPESLTLGTQF 651

Query: 478 FSSIKKIYGITPTIKHFACMIDILG---RAGKFTEIENFITETKLTPNALVWENLLGACS 534
              I K +G +   ++    I +LG    + +  E     +E     + ++W  ++   S
Sbjct: 652 HGQIIK-WGFSSEGEYLG--ISLLGLYMNSRRMAEACALFSELSSPKSIVLWTGMMSGHS 708

Query: 535 WHGNIE 540
            +G  E
Sbjct: 709 QNGFYE 714



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 123/466 (26%), Positives = 219/466 (46%), Gaps = 38/466 (8%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           ++ G+ VH+ ++ LG   +  L  ++VD+Y+KC     A K F  + + DV AW ++++ 
Sbjct: 76  LRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFNSL-EKDVTAWNSMLSM 134

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
               G   +  + F  + E+ + PN+F  + ++  +    +   G  IH  + K G E +
Sbjct: 135 YSSIGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLERN 194

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
           +  G ALV MY +  R+    RVF+ I   ++V W  LFS +     P++ + +F +M  
Sbjct: 195 SYCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMRG 254

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           +G +P+   F+ ++    SL                                   G L+D
Sbjct: 255 EGHRPDHLAFVTVINTYISL-----------------------------------GKLKD 279

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A + F  + + D+ A+  +I+ + + G   +A++ F  MR   +KS   TL S L+    
Sbjct: 280 ARLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGI 339

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           VA L  G ++H+ A+K G   +++V ++LV+MY+KC  ++ A  VF+    R+   WN M
Sbjct: 340 VANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAM 399

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           I GY  +G   K +E F  M   GY  D+ TF  +LS C+    +E G + F SI     
Sbjct: 400 IRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEMGSQ-FHSIIIKKK 458

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
           +T  +     ++D+  + G   +    I E     + + W  ++G 
Sbjct: 459 LTKNLFVGNALVDMYAKCGALEDARQ-IFEHMCDRDNVSWNTIIGG 503



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 110/446 (24%), Positives = 189/446 (42%), Gaps = 63/446 (14%)

Query: 120 WGAIITCLDQ--QG---CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
           +G ++   DQ  QG    C E  K+F   +     P++  L             R G+++
Sbjct: 34  YGHVLPNHDQIHQGLLEICLEQCKLFKSRKVFDEMPHRLALA-----------LRIGKAV 82

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H+     G +S+  +GNA+V +Y +  +VSY  + F ++  +D  +WN++ S +     P
Sbjct: 83  HSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFNSL-EKDVTAWNSMLSMYSSIGQP 141

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
            + LR F  +      PN  TF ++L   +  ++V FG+Q+H   IK  L+ N   G +L
Sbjct: 142 GKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLERNSYCGGAL 201

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           VDMY K   L DA   FD + + +   +T + + Y +AG  E A+  F +MR EG + + 
Sbjct: 202 VDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMRGEGHRPDH 261

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
               + +N                                    Y   G + DA  +F  
Sbjct: 262 LAFVTVIN-----------------------------------TYISLGKLKDARLLFGE 286

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
               D  +WN+MI G+ K G    A+E F  M          T   VLSA   +  ++ G
Sbjct: 287 MPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLG 346

Query: 475 -KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
              H  +IK   G+   I   + ++ +  +  K  E    + E     N ++W  ++   
Sbjct: 347 LVVHAEAIK--LGLASNIYVGSSLVSMYSKCEKM-EAAAKVFEALEERNDVLWNAMIRGY 403

Query: 534 SWHGNIELDEKDAEKLLELEPKMESN 559
           + +G       ++ K++EL   M+S+
Sbjct: 404 AHNG-------ESHKVMELFMDMKSS 422


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/596 (33%), Positives = 337/596 (56%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R+F +M   + VS+N+L++G  + G   + + LF  M+    K    +++++L   A+
Sbjct: 315 AERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACAS 374

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G +  G  +H+ AI+ G + D  L  SL+D+YSKC   + A K F   +  ++V W  +
Sbjct: 375 VGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVM 434

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    Q     ++ +IF  M+   + PNQF   S++R  T  G    GE IH  + K GF
Sbjct: 435 LVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGF 494

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           + +  V + L+ MY + G+++   R+   +   D VSW A+ + +  ++   + L++F +
Sbjct: 495 QLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEE 554

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +G + +   F   + AC+ +  +  G+Q+HA +       +  +  +L+ +Y + G 
Sbjct: 555 MEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGR 614

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +++A +AF+ + +K+  ++ ++++  AQ+G  E AL+ F +M     + N FT  S ++ 
Sbjct: 615 IQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISA 674

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
            + +A +  G+ +HS+ +KTG+  +  VS +L+++YAK GSI DA   F   + R+  SW
Sbjct: 675 AASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISW 734

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N MI GY +HG G +AL  F  M   G +P+ +TFV VLSACSH+GL++EG  +F S+ K
Sbjct: 735 NAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFK 794

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
           I+ + P  +H+ C++D+LGRAG+      +I E  +  +A++W  LL AC  H NIE+ E
Sbjct: 795 IHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGE 854

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           + A  LLELEP+  + YV  S+I A   +W      R L+   G+KKEP  SWIEV
Sbjct: 855 RAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDXGVKKEPGRSWIEV 910



 Score =  248 bits (632), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 160/543 (29%), Positives = 273/543 (50%), Gaps = 13/543 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK---- 59
           A +VF      +V SWN +++ +       +V  LF  M       + ++ + VLK    
Sbjct: 112 AVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVG 171

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           G     Y+K    VH+     G      ++  L+D+YSK G  ++A KVF  I   D+V 
Sbjct: 172 GDIAFNYVKQ---VHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVT 228

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W A+I+ L Q G  +EA  +F  M  S + P  +VL+S++ A+T+      GE +H ++ 
Sbjct: 229 WVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVI 288

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K+GF S+T V N LV++Y  + ++    R+F  +  +D VS+N+L S        D+ L 
Sbjct: 289 KWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALE 348

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F +M     KP+  T   +L AC+S+  +  G QLH+H IK  +  + ++  SL+D+Y 
Sbjct: 349 LFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYS 408

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K   +E A   F     +++  +  ++ +Y Q      + + FR+M++EG+  N+FT  S
Sbjct: 409 KCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPS 468

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L  C+ +  L  G  +H+  +KTG  L+++V + L+ MYAK G +  A  + +     D
Sbjct: 469 ILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDD 528

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HF 478
             SW  MI GYV+H +  +AL+ F  M   G   D I F   +SAC+ +  + +G++ H 
Sbjct: 529 VVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHA 588

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKL-TPNALVWENLLGACSWHG 537
            S    +G   +I +   +I +  R G+  E   ++   K+   N + W +L+   +  G
Sbjct: 589 QSYAAGFGADLSINN--ALISLYARCGRIQEA--YLAFEKIGDKNNISWNSLVSGLAQSG 644

Query: 538 NIE 540
             E
Sbjct: 645 YFE 647



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 153/591 (25%), Positives = 285/591 (48%), Gaps = 17/591 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E AK+VF  +   ++V+W A+++G +++G  ++ + LFC M   E   + + LS+VL  
Sbjct: 211 IESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSA 270

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                  + G+ +H + I+ G   + ++   LV +YS+     +A ++F  +   D V++
Sbjct: 271 STKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSY 330

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I+ L QQG    A ++F  M+   +KP+   + SL+ A    G    G  +H+   K
Sbjct: 331 NSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIK 390

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G  +D ++  +L+ +Y +   V    + F     ++ V WN +   +   ++      I
Sbjct: 391 AGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEI 450

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QM ++G  PN  T+  IL+ C+SL  +  G+Q+H H IK     N  V + L+DMY K
Sbjct: 451 FRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAK 510

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L  A      L   D+ ++TA+I  Y Q      AL+ F +M   GI+ +    AS 
Sbjct: 511 YGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASA 570

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           ++ C+ +  L  G+ +H+ +   G   D+ ++ AL+++YA+CG I +A   F+    ++ 
Sbjct: 571 ISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNN 630

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SWN ++ G  + G  E+AL+ F  ML      +  T+   +SA + +  I++G++  S 
Sbjct: 631 ISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSM 690

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + K  G     +    +I +  ++G  ++      +     N + W  ++   S HG   
Sbjct: 691 VLKT-GYDSEREVSNSLISLYAKSGSISDAWREFNDMS-ERNVISWNAMITGYSQHGC-- 746

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
                  + L L  +M+   + P+ ++        F GV +  S  G+ KE
Sbjct: 747 -----GMEALRLFEEMKVCGIMPNHVT--------FVGVLSACSHIGLVKE 784



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 126/472 (26%), Positives = 226/472 (47%), Gaps = 21/472 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A + F      N+V WN +L  Y +  +      +F  M+      ++F+  ++L+ 
Sbjct: 413 VETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRT 472

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             + G +  G+ +H   I+ G  L+ ++   L+DMY+K G    AL++  R+ + DVV+W
Sbjct: 473 CTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSW 532

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    Q     EA ++F  M    ++ +     S + A       R G+ IHA    
Sbjct: 533 TAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYA 592

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GF +D  + NAL+S+Y   GR+      FE I  ++++SWN+L S        ++ L++
Sbjct: 593 AGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQV 652

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +ML    + NM T+   + A +SL+++  G+Q+H+  +K   D    V  SL+ +Y K
Sbjct: 653 FVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAK 712

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
           SG + DA   F+ ++ +++ ++ A+IT Y+Q G    AL+ F +M++ GI  N  T    
Sbjct: 713 SGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGV 772

Query: 361 LNGCSPVATLANGR-------LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
           L+ CS +  +  G         +H +  K+ H +       +V +  + G +D A    K
Sbjct: 773 LSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYV------CVVDLLGRAGQLDRAMEYIK 826

Query: 414 GSAL-RDTASWNMMIGGYVKHG---LGEKALEAFRMMLDEGYVPDEITFVVV 461
              +  D   W  ++   V H    +GE+A      +  E    D  T+V++
Sbjct: 827 EMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPE----DSATYVLI 874



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 139/543 (25%), Positives = 241/543 (44%), Gaps = 25/543 (4%)

Query: 57  VLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD 116
           +L+G   SG +     +H    + G   +  L  SLVD Y + G    A+KVF    +  
Sbjct: 64  LLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRS 123

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG--ESI 174
           V +W  +I     Q    +   +F  M    + PN +    +++A    GD      + +
Sbjct: 124 VFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACV-GGDIAFNYVKQV 182

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H+    YGF+S  LV N L+ +Y +NG +    +VF  I  +D V+W A+ S        
Sbjct: 183 HSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLE 242

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
           ++ + +F  M      P       +L A + +     G+QLH   IK        V   L
Sbjct: 243 EEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGL 302

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           V +Y +S  L  A   F ++ ++D  +Y ++I+   Q G ++ AL+ F KM+ + +K + 
Sbjct: 303 VALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDC 362

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            T+AS L+ C+ V  L  G  LHS A+K G   D+ +  +L+ +Y+KC  ++ A   F  
Sbjct: 363 ITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLX 422

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
           +   +   WN+M+  Y +      + E FR M  EG +P++ T+  +L  C+ +G +  G
Sbjct: 423 TETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLG 482

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
           ++  + + K  G    +   + +ID+  + G+   +   I       + + W  ++    
Sbjct: 483 EQIHTHVIKT-GFQLNVYVCSVLIDMYAKYGQLA-LALRILRRLPEDDVVSWTAMIAGYV 540

Query: 535 WHGNIELDEKDAEKLLELEPKME------SNYVFPSDISATQGRWNDFSGVRALLSSQGI 588
            H           + L+L  +ME       N  F S ISA        +G+RAL   Q I
Sbjct: 541 QHDMF-------SEALQLFEEMEYRGIQFDNIGFASAISAC-------AGIRALRQGQQI 586

Query: 589 KKE 591
             +
Sbjct: 587 HAQ 589



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 121/430 (28%), Positives = 209/430 (48%), Gaps = 8/430 (1%)

Query: 138 KIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMY 197
           ++ N M E  V+ N      L+     +G       +H  I K GF+ + L+ ++LV  Y
Sbjct: 44  QLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNY 103

Query: 198 MENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFI 257
             +G      +VF+  +++   SWN +   F   +S  Q   +F +ML +G  PN  TF 
Sbjct: 104 FRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFA 163

Query: 258 VILKACSSLSDVGFG--KQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
            +LKAC    D+ F   KQ+H+ T  +  D + +V   L+D+Y K+G +E A   F+ + 
Sbjct: 164 GVLKACVG-GDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCIC 222

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRL 375
            KD+  + A+I+  +Q G  E A+  F  M    I    + L+S L+  + +     G  
Sbjct: 223 MKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQ 282

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           LH + +K G   + +V   LVA+Y++   +  AE +F     RD  S+N +I G V+ G 
Sbjct: 283 LHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGF 342

Query: 436 GEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHF 494
            ++ALE F  M  +   PD IT   +LSAC+ +G + +G + H  +IK   G++  I   
Sbjct: 343 SDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKA--GMSADIILE 400

Query: 495 ACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEP 554
             ++D+  +         F   T+ T N ++W  +L A     N+  D  +  + +++E 
Sbjct: 401 GSLLDLYSKCADVETAHKFFLXTE-TENIVLWNVMLVAYGQLDNLS-DSFEIFRQMQMEG 458

Query: 555 KMESNYVFPS 564
            + + + +PS
Sbjct: 459 MIPNQFTYPS 468



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 140/323 (43%), Gaps = 12/323 (3%)

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           +G + N   ++ +L+ C +   +    +LH    K   DG  ++  SLVD Y + G    
Sbjct: 52  RGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHG 111

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A   FD  +N+ +F++  +I  +            FR+M  EGI  N +T A  L  C  
Sbjct: 112 AVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVG 171

Query: 367 VATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
                N  + +HS     G      V+  L+ +Y+K G I+ A+ VF    ++D  +W  
Sbjct: 172 GDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVA 231

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKI 484
           MI G  ++GL E+A+  F  M      P       VLSA + + L E G++ H   IK  
Sbjct: 232 MISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIK-- 289

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEK 544
           +G          ++ +  R+ K    E  I  T  + + + + +L+      G       
Sbjct: 290 WGFHSETYVCNGLVALYSRSRKLISAER-IFSTMNSRDGVSYNSLISGLVQQGF------ 342

Query: 545 DAEKLLELEPKMESNYVFPSDIS 567
            +++ LEL  KM+ + + P  I+
Sbjct: 343 -SDRALELFTKMQRDCLKPDCIT 364


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/601 (34%), Positives = 322/601 (53%), Gaps = 9/601 (1%)

Query: 7   VFKSMPELNVVSWNALLNGYAESG---DGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           VF  MP+ NV SW  ++ G  E G   DG K    FC M +      KF+ S +++    
Sbjct: 177 VFDEMPQRNVFSWTVMIVGSTEHGLFFDGFK---FFCEMLNSGILPDKFAYSAIIQSCIG 233

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ G++VHA  +  G A   F+S SL++MY+K G  +++  VF  + + + V+W A+
Sbjct: 234 LDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAM 293

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+     G   EA  +F  M+  +  PN + L S+ +A  +  D   G+ +     + G 
Sbjct: 294 ISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGI 353

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEA--IAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           E + LVG AL+ MY + G +     VF+   I    +  WNA+ S +       + L ++
Sbjct: 354 EGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELY 413

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGTSLVDMYDK 300
            QM   G   ++ T+  +  A ++   + FG+ +H   +K  LD   V V  ++ D Y K
Sbjct: 414 VQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSK 473

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G LED    FD +  +D+ ++T ++T+Y+Q+   E AL  F  MR EG   N+FT +S 
Sbjct: 474 CGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSV 533

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L  C+ +  L  GR +H +  K G   +  + +AL+ MYAKCGSI +A  VF   +  D 
Sbjct: 534 LISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDI 593

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SW  +I GY +HGL E AL+ FR M   G   + +T + VL ACSH G++EEG  +F  
Sbjct: 594 VSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQ 653

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           ++  YG+ P ++H+AC+ID+LGR G+  +   FI +  + PN +VW+ LLG C  HGN+E
Sbjct: 654 MEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVE 713

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           L E  A K+L + P+  + YV  S+     G + D   +R ++  QG+KKEP  SWI V 
Sbjct: 714 LGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVK 773

Query: 601 G 601
           G
Sbjct: 774 G 774



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 147/510 (28%), Positives = 250/510 (49%), Gaps = 16/510 (3%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSL---VDMYSKCGLADNALKVFY 110
           L  VL+  A  G I+  + VH + ++     DK L         +YSKC     A  VF 
Sbjct: 121 LIDVLRDCAEKGSIREAKAVHGLVLKSNFE-DKDLMVLFNHAAHVYSKCSEFRAACGVFD 179

Query: 111 RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC 170
            +   +V +W  +I    + G   +  K F  M  S + P++F  ++++++         
Sbjct: 180 EMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLEL 239

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
           G+ +HA I   GF +   V  +L++MY + G +     VF  +   + VSWNA+ S    
Sbjct: 240 GKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTS 299

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
                +   +F +M      PNM T + + KA   L DV  GK++     +  ++GN +V
Sbjct: 300 NGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLV 359

Query: 291 GTSLVDMYDKSGCLEDAGVAFDS-LANKDL-FAYTAIITSYAQAGEAEMALKCFRKMRLE 348
           GT+L+DMY K G L DA   FD+   N  +   + A+I+ Y+Q+G ++ AL+ + +M   
Sbjct: 360 GTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQN 419

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG-HLLDMFVSTALVAMYAKCGSIDD 407
           GI S+ +T  S  N  +   +L  GR++H + +K G  L+ + V+ A+   Y+KCG ++D
Sbjct: 420 GITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLED 479

Query: 408 AEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
              VF     RD  SW  ++  Y +  LGE+AL  F +M +EG+ P++ TF  VL +C+ 
Sbjct: 480 VRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCAS 539

Query: 468 MGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWE 527
           +  +E G++    + K  G+       + +ID+  + G  TE      +    P+ + W 
Sbjct: 540 LCFLEYGRQVHGLLCKA-GLDTEKCIESALIDMYAKCGSITEAGKVFDKIS-NPDIVSWT 597

Query: 528 NLLGACSWHGNIELDEKDAEKLLELEPKME 557
            ++   + HG +E    DA   L+L  +ME
Sbjct: 598 AIISGYAQHGLVE----DA---LQLFRRME 620



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 97/166 (58%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E  ++VF  M E ++VSW  L+  Y++S  G++ +  FC M++     ++F+ S+VL  
Sbjct: 477 LEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLIS 536

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+  +++ G+ VH +  + G   +K +  +L+DMY+KCG    A KVF +I +PD+V+W
Sbjct: 537 CASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSW 596

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
            AII+   Q G  ++A ++F  M  S +K N   L  ++ A +  G
Sbjct: 597 TAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGG 642



 Score = 45.4 bits (106), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 84/189 (44%), Gaps = 11/189 (5%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A +VF  +   ++VSW A+++GYA+ G  +  + LF  M+    K +  +L  VL   ++
Sbjct: 581 AGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSH 640

Query: 64  SGYIKAGQV-VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVVAWG 121
            G ++ G      M    G   +      ++D+  + G  D+A++   ++  +P+ + W 
Sbjct: 641 GGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQ 700

Query: 122 AIITCLDQQGCCQ----EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
            ++      G  +     A KI ++  E S     +VL S      ETG    G S+  V
Sbjct: 701 TLLGGCRVHGNVELGEIAARKILSIRPEYSAT---YVLLS--NTYIETGSYEDGLSLRNV 755

Query: 178 ICKYGFESD 186
           +   G + +
Sbjct: 756 MKDQGVKKE 764


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/601 (34%), Positives = 322/601 (53%), Gaps = 9/601 (1%)

Query: 7   VFKSMPELNVVSWNALLNGYAESG---DGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           VF  MP+ NV SW  ++ G  E G   DG K    FC M +      KF+ S +++    
Sbjct: 123 VFDEMPQRNVFSWTVMIVGSTEHGLFFDGFK---FFCEMLNSGILPDKFAYSAIIQSCIG 179

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ G++VHA  +  G A   F+S SL++MY+K G  +++  VF  + + + V+W A+
Sbjct: 180 LDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAM 239

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+     G   EA  +F  M+  +  PN + L S+ +A  +  D   G+ +     + G 
Sbjct: 240 ISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGI 299

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEA--IAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           E + LVG AL+ MY + G +     VF+   I    +  WNA+ S +       + L ++
Sbjct: 300 EGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELY 359

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGTSLVDMYDK 300
            QM   G   ++ T+  +  A ++   + FG+ +H   +K  LD   V V  ++ D Y K
Sbjct: 360 VQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSK 419

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G LED    FD +  +D+ ++T ++T+Y+Q+   E AL  F  MR EG   N+FT +S 
Sbjct: 420 CGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSV 479

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L  C+ +  L  GR +H +  K G   +  + +AL+ MYAKCGSI +A  VF   +  D 
Sbjct: 480 LISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDI 539

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SW  +I GY +HGL E AL+ FR M   G   + +T + VL ACSH G++EEG  +F  
Sbjct: 540 VSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQ 599

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           ++  YG+ P ++H+AC+ID+LGR G+  +   FI +  + PN +VW+ LLG C  HGN+E
Sbjct: 600 MEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVE 659

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           L E  A K+L + P+  + YV  S+     G + D   +R ++  QG+KKEP  SWI V 
Sbjct: 660 LGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVK 719

Query: 601 G 601
           G
Sbjct: 720 G 720



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 141/493 (28%), Positives = 242/493 (49%), Gaps = 9/493 (1%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSL---VDMYSKCGLADNALKVFY 110
           L  VL+  A  G I+  + VH + ++     DK L         +YSKC     A  VF 
Sbjct: 67  LIDVLRDCAEKGSIREAKAVHGLVLKSNFE-DKDLMVLFNHAAHVYSKCSEFRAACGVFD 125

Query: 111 RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC 170
            +   +V +W  +I    + G   +  K F  M  S + P++F  ++++++         
Sbjct: 126 EMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLEL 185

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
           G+ +HA I   GF +   V  +L++MY + G +     VF  +   + VSWNA+ S    
Sbjct: 186 GKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTS 245

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
                +   +F +M      PNM T + + KA   L DV  GK++     +  ++GN +V
Sbjct: 246 NGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLV 305

Query: 291 GTSLVDMYDKSGCLEDAGVAFDS-LANKDL-FAYTAIITSYAQAGEAEMALKCFRKMRLE 348
           GT+L+DMY K G L DA   FD+   N  +   + A+I+ Y+Q+G ++ AL+ + +M   
Sbjct: 306 GTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQN 365

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG-HLLDMFVSTALVAMYAKCGSIDD 407
           GI S+ +T  S  N  +   +L  GR++H + +K G  L+ + V+ A+   Y+KCG ++D
Sbjct: 366 GITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLED 425

Query: 408 AEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
              VF     RD  SW  ++  Y +  LGE+AL  F +M +EG+ P++ TF  VL +C+ 
Sbjct: 426 VRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCAS 485

Query: 468 MGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWE 527
           +  +E G++    + K  G+       + +ID+  + G  TE      +    P+ + W 
Sbjct: 486 LCFLEYGRQVHGLLCKA-GLDTEKCIESALIDMYAKCGSITEAGKVFDKIS-NPDIVSWT 543

Query: 528 NLLGACSWHGNIE 540
            ++   + HG +E
Sbjct: 544 AIISGYAQHGLVE 556



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 97/166 (58%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E  ++VF  M E ++VSW  L+  Y++S  G++ +  FC M++     ++F+ S+VL  
Sbjct: 423 LEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLIS 482

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+  +++ G+ VH +  + G   +K +  +L+DMY+KCG    A KVF +I +PD+V+W
Sbjct: 483 CASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSW 542

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
            AII+   Q G  ++A ++F  M  S +K N   L  ++ A +  G
Sbjct: 543 TAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGG 588



 Score = 45.8 bits (107), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 84/189 (44%), Gaps = 11/189 (5%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A +VF  +   ++VSW A+++GYA+ G  +  + LF  M+    K +  +L  VL   ++
Sbjct: 527 AGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSH 586

Query: 64  SGYIKAGQV-VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVVAWG 121
            G ++ G      M    G   +      ++D+  + G  D+A++   ++  +P+ + W 
Sbjct: 587 GGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQ 646

Query: 122 AIITCLDQQGCCQ----EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
            ++      G  +     A KI ++  E S     +VL S      ETG    G S+  V
Sbjct: 647 TLLGGCRVHGNVELGEIAARKILSIRPEYSAT---YVLLS--NTYIETGSYEDGLSLRNV 701

Query: 178 ICKYGFESD 186
           +   G + +
Sbjct: 702 MKDQGVKKE 710


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/600 (33%), Positives = 323/600 (53%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+R F  M + + V WN ++NGY + G+    + LF  M   E K    + + VL  
Sbjct: 61  IEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSI 120

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +   ++ G+ +H + +R G      +  +LV +YSK     +A K+F  +   D+V W
Sbjct: 121 SCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVW 180

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I    Q G   +A+ +FN M  + +KP+    TS + +  E+   +  + IH  I +
Sbjct: 181 NRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVR 240

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +G   D  + +AL+ +Y +        ++F      D V + A+ S +         L I
Sbjct: 241 HGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEI 300

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  +L K   PN  TF  IL AC+ L+ +  G++LH + IK+ L+    VG+++++MY K
Sbjct: 301 FRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYAK 360

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L+ A + F  ++ KD   + +IITS++Q G+ E A+  FR+M +EG+K +  T+++ 
Sbjct: 361 CGRLDLAHLIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAA 420

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L+ C+ +  L  G+ +H   +K     D+F  +AL+ MYAKCG ++ A  VF     ++ 
Sbjct: 421 LSACANIPALHYGKEIHGFMIKGAFESDLFDMSALINMYAKCGKLNIARLVFNLMQEKNE 480

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            +WN +I  Y  HG    +L  F  ML+EG  PD ITF+ +LS+C H G +E+G ++F  
Sbjct: 481 VAWNSIIAAYGYHGYLADSLALFHNMLEEGIQPDHITFLTILSSCGHAGQVEDGVRYFRC 540

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + + YGI   ++H+ACM D+ GRAG   E    IT     P A VW  LLGAC  HGN+E
Sbjct: 541 MTEEYGIPAQMEHYACMADLFGRAGHLDEAFEVITSMPFPPAASVWGTLLGACRVHGNVE 600

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           L E  +  LL+LEPK    Y+  + + A  G+W     ++ L+  +G++K P CSWIEV+
Sbjct: 601 LAEVASRYLLDLEPKNSGYYLLLTHVLADAGKWRSVHKIQHLMKERGVQKVPGCSWIEVN 660



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 129/488 (26%), Positives = 235/488 (48%), Gaps = 4/488 (0%)

Query: 51  KFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFY 110
           K++   V+K       ++ G+V+  M + +G  LD F++ SL+ +Y+  G  ++A + F 
Sbjct: 10  KYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDARRFFD 69

Query: 111 RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC 170
           ++ D D V W  +I    Q G    A K+F  M  S  KP+      ++  +        
Sbjct: 70  KMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSEAMVEY 129

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
           G  +H ++ + G +   LVGN LV++Y +  ++    ++F+ +   D V WN +   +  
Sbjct: 130 GRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGYVQ 189

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
               D    +F +M+  G KP+  TF   L + +  S +   K++H + ++H +  +  +
Sbjct: 190 NGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYL 249

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
            ++L+D+Y K      A   F+     D+  YTA+I+ Y   G  + AL+ FR +  + +
Sbjct: 250 NSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKM 309

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
             N  T +S L  C+ +A +  GR LH   +K        V +A++ MYAKCG +D A  
Sbjct: 310 IPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYAKCGRLDLAHL 369

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           +F   +++D   WN +I  + + G  E+A+  FR M  EG   D +T    LSAC+++  
Sbjct: 370 IFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPA 429

Query: 471 IEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENL 529
           +  GK+ H   IK  +     +   + +I++  + GK   I   +       N + W ++
Sbjct: 430 LHYGKEIHGFMIKGAF--ESDLFDMSALINMYAKCGKLN-IARLVFNLMQEKNEVAWNSI 486

Query: 530 LGACSWHG 537
           + A  +HG
Sbjct: 487 IAAYGYHG 494



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 100/336 (29%), Positives = 173/336 (51%)

Query: 148 VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGS 207
           V P+++    +++  T   + R G+ I  +I + GF+ D  V ++L+ +Y +NG +    
Sbjct: 6   VFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDAR 65

Query: 208 RVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLS 267
           R F+ +  +D V WN + + +      D  +++F  M+    KP+  TF  +L    S +
Sbjct: 66  RFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSEA 125

Query: 268 DVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIIT 327
            V +G+QLH   ++  LD   +VG +LV +Y K   L DA   FD +   DL  +  +I 
Sbjct: 126 MVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIG 185

Query: 328 SYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL 387
            Y Q G  + A   F +M   GIK +  T  S L   +  ++L   + +H   V+ G +L
Sbjct: 186 GYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVIL 245

Query: 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML 447
           D+++++AL+ +Y KC     A  +F  S   D   +  MI GYV +G+ + ALE FR +L
Sbjct: 246 DVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLL 305

Query: 448 DEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
            +  +P+ +TF  +L AC+ +  I+ G++    I K
Sbjct: 306 QKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIK 341



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 153/332 (46%), Gaps = 35/332 (10%)

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           ML  G  P+  TF  ++K C+ L++V  GK +    ++   D +  V +SL+ +Y  +GC
Sbjct: 1   MLGCGVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGC 60

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +EDA   FD + +KD   +  +I  Y Q GE++ A+K F+ M     K +  T A  L+ 
Sbjct: 61  IEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSI 120

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
               A +  GR LH + V++G      V   LV +Y+K   + DA  +F      D   W
Sbjct: 121 SCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVW 180

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N MIGGYV++G  + A   F  M+  G  PD ITF   L + +    +++ K+    I +
Sbjct: 181 NRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVR 240

Query: 484 IYGITPTIKHFACMIDI-------------LGRAGKF---------------------TE 509
            +G+   +   + +ID+                + KF                      E
Sbjct: 241 -HGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALE 299

Query: 510 IENFITETKLTPNALVWENLLGACSWHGNIEL 541
           I  ++ + K+ PNAL + ++L AC+    I+L
Sbjct: 300 IFRWLLQKKMIPNALTFSSILPACAGLAAIKL 331


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/596 (32%), Positives = 325/596 (54%), Gaps = 1/596 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLKGFA 62
           A+++F  M + + +SW  +++GY    +  + + LF  M  +       F LS  LK   
Sbjct: 20  ARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGLHMDPFILSLALKACG 79

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
            +  +  G+ +H  +++       F+  +LVDMY K G  D    VF  +   +VV+W A
Sbjct: 80  LNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKEMPLRNVVSWTA 139

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           II  L + G  +EA   F+ M    V  + +  +S ++A  ++G    G  IH    K G
Sbjct: 140 IIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREIHCQTLKKG 199

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F + + V N L +MY + G++ YG R+FE++  +D VSW  +          +  ++ F 
Sbjct: 200 FTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEENAVKAFR 259

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M      PN  TF  ++  C++L  + +G+QLHAH I+  L  +  V  S++ MY K  
Sbjct: 260 RMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSVANSIMAMYSKCW 319

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            L+ A   F  L+ +D+ +++ +I+ YAQ G  E A      MR EG + NEF  AS L+
Sbjct: 320 QLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLS 379

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C  +A L  G+ LH+  +  G   +  V +AL+ MY+KCGSI +A  +F  +   +  S
Sbjct: 380 VCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKIFDEAEYNNIVS 439

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           W  MI GY +HG  ++A++ F+ +   G  PD +TF+ VL+ACSH GL++ G  +F+S+ 
Sbjct: 440 WTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACSHAGLVDLGFHYFNSLS 499

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           K++ I P+  H+ CMID+L RAG+  + E+ I       + +VW  LL AC  HG+++  
Sbjct: 500 KVHQICPSKDHYGCMIDLLCRAGRLNDAESMIQSMPFQRDDVVWSTLLRACRIHGDVDCG 559

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           ++ AEK+L+L+P     ++  +++ A +G+W + + VR ++ S+G+ KEP  SWI+
Sbjct: 560 KRAAEKILQLDPNCAVTHITLANMYAAKGKWKEAAEVRKMMKSKGVVKEPGWSWIK 615



 Score =  228 bits (581), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 133/441 (30%), Positives = 227/441 (51%), Gaps = 3/441 (0%)

Query: 98  KCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMR-ESSVKPNQFVLT 156
           K G  +NA ++F ++   D ++W  II+         EA  +F+ M  E  +  + F+L+
Sbjct: 13  KTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGLHMDPFILS 72

Query: 157 SLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ 216
             ++A         GES+H    K  F +   VG+ALV MYM+ G+V  G  VF+ +  +
Sbjct: 73  LALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKEMPLR 132

Query: 217 DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLH 276
           + VSW A+ +         + L  F  M ++    +  TF   LKAC+    + +G+++H
Sbjct: 133 NVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREIH 192

Query: 277 AHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAE 336
             T+K        V  +L  MY+K G L+     F+S+  +D+ ++T II S  Q G+ E
Sbjct: 193 CQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEE 252

Query: 337 MALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALV 396
            A+K FR+MR   +  NEFT A+ ++GC+ +  +  G  LH+  ++ G +  + V+ +++
Sbjct: 253 NAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSVANSIM 312

Query: 397 AMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI 456
           AMY+KC  +D A  VF+G + RD  SW+ MI GY + G GE+A +    M  EG  P+E 
Sbjct: 313 AMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEF 372

Query: 457 TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE 516
            F  VLS C +M ++E+GK+  + +  + G+       + +I++  + G   E      E
Sbjct: 373 AFASVLSVCGNMAILEQGKQLHAHVLCV-GLEQNTMVQSALINMYSKCGSIKEASKIFDE 431

Query: 517 TKLTPNALVWENLLGACSWHG 537
            +   N + W  ++   + HG
Sbjct: 432 AEYN-NIVSWTAMINGYAEHG 451


>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial [Vitis vinifera]
 gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
          Length = 1048

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 215/604 (35%), Positives = 331/604 (54%), Gaps = 8/604 (1%)

Query: 1    MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
            ME AK+VF ++ E N+V WNA+L GYA++G   KVM LF  M+       +F+ +++L  
Sbjct: 400  MEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSA 459

Query: 61   FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             A    ++ G+ +H+  I+     + F+  +LVDMY+KCG  + A + F  I++ D V+W
Sbjct: 460  CACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSW 519

Query: 121  GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             AII    Q+    EA  +F  M    + P++  L S++           GE +H  + K
Sbjct: 520  NAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVK 579

Query: 181  YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             G ++    G++L+ MY++ G +     VF  +  +  VS NA+ + +   +   + + +
Sbjct: 580  SGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQNDLV-EAIDL 638

Query: 241  FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL--DGNHVVGTSLVDMY 298
            F +M  +G  P+  TF  +L AC+    +  G+Q+H    K  L  DG+  +G SL+ MY
Sbjct: 639  FQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLLYDGD-FLGVSLLVMY 697

Query: 299  DKSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
              S    DA + F      K    +TAII+ + Q G +E AL+ +++M     + ++ T 
Sbjct: 698  MNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATF 757

Query: 358  ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK--GS 415
            AS L  CS +A+L +GR++HS+    G   D    +A+V MYAKCG +  +  VF+  GS
Sbjct: 758  ASVLRACSILASLGDGRMIHSLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGS 817

Query: 416  ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
               D  SWN MI G+ K+G  E AL+ F  M      PD++TF+ VL+ACSH G + EG+
Sbjct: 818  K-NDVISWNSMIVGFAKNGYAENALKIFDEMKHTRIRPDDVTFLGVLTACSHAGRVSEGR 876

Query: 476  KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
            + F  +   Y I P + H ACMID+LGR G   E E FI +    PNA++W  LLGAC  
Sbjct: 877  EIFDIMVHSYKIVPRLDHCACMIDLLGRWGFLKEAEEFIDKLNFEPNAMIWATLLGACRI 936

Query: 536  HGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCS 595
            HG+     + AEKL+ELEP+  S YV  S+I A  G W++ + VR  +  +G++K P CS
Sbjct: 937  HGDDIRGRRAAEKLIELEPENSSPYVLLSNIYAASGNWDEVNSVRRAMREKGLRKLPGCS 996

Query: 596  WIEV 599
            WI V
Sbjct: 997  WIVV 1000



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 171/629 (27%), Positives = 301/629 (47%), Gaps = 74/629 (11%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A + F  + + ++++WN++L+ Y+  G  ++V+  F S+++     ++F+ + VL  
Sbjct: 132 VEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSS 191

Query: 61  FANSGYIKAGQVVHAMAIRLG---------CALDKFLSC-SLVDM--------------- 95
            A    I  G+ VH   I++G           +D +  C SLVD                
Sbjct: 192 CARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSW 251

Query: 96  ------YSKCGLADNALKVF-----------------------------------YRIKD 114
                 Y + GL + ALKVF                                    ++ +
Sbjct: 252 TAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRLDDACDLFVQMPN 311

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
            +VVAW  +I+   ++GC  EA   F  M ++ VK  +  L S++ A         G  +
Sbjct: 312 TNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLV 371

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           HA   K G  S+  VG++L++MY +  ++    +VF+A+  ++ V WNA+   +      
Sbjct: 372 HAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYA 431

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
            + +++F +M   GF P+  T+  IL AC+ L  +  G+QLH+  IKH+ + N  V  +L
Sbjct: 432 SKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTL 491

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           VDMY K G LE+A   F+ + N+D  ++ AII  Y Q  + + A   FR+M L+GI  +E
Sbjct: 492 VDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDE 551

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            +LAS L+GC+ +  L  G  +H   VK+G    ++  ++L+ MY KCG+I+ A  VF  
Sbjct: 552 VSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSC 611

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
              R   S N +I GY ++ L E A++ F+ M +EG  P EITF  +L AC+    +  G
Sbjct: 612 MPSRSVVSMNAIIAGYAQNDLVE-AIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLG 670

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
           ++    I+K   +         ++ +   + + T+ +   +E +   + ++W  ++   +
Sbjct: 671 RQIHCLIQKRGLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGHT 730

Query: 535 WHGNIELDEKDAEKLLELEPKMESNYVFP 563
            +G        +E+ L+L  +M  N   P
Sbjct: 731 QNGC-------SEEALQLYQEMHRNNARP 752



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 126/503 (25%), Positives = 240/503 (47%), Gaps = 50/503 (9%)

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127
           +  + +HA  ++ G      L  ++VD+Y+KCG  + A K F +++  D++AW ++++  
Sbjct: 98  RTSKTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMY 157

Query: 128 DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDT 187
            +QG  ++    F  ++   V PNQF    ++ +     D   G+ +H  + K GFE ++
Sbjct: 158 SRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNS 217

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK 247
               +L+ MY + G +    ++F+A+   D+VSW A+ + +     P++ L++F  M   
Sbjct: 218 FCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKL 277

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           G  P+   F+ ++ AC     VG G+                              L+DA
Sbjct: 278 GLVPDQVAFVTVITAC-----VGLGR------------------------------LDDA 302

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367
              F  + N ++ A+  +I+ + + G    A+  F+ M   G+KS   TL S L+  + +
Sbjct: 303 CDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASL 362

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
             L  G L+H+ A+K G   +++V ++L+ MYAKC  ++ A+ VF     R+   WN M+
Sbjct: 363 EALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAML 422

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYG 486
           GGY ++G   K ++ F  M   G+ PDE T+  +LSAC+ +  +E G++ H   IK  + 
Sbjct: 423 GGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFE 482

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI--ELDEK 544
               +++   ++D+  + G   E        +   N           SW+  I   + E+
Sbjct: 483 YNLFVEN--TLVDMYAKCGALEEARQQFEFIRNRDNV----------SWNAIIVGYVQEE 530

Query: 545 DAEKLLELEPKMESNYVFPSDIS 567
           D ++   +  +M  + + P ++S
Sbjct: 531 DEDEAFNMFRRMILDGIAPDEVS 553


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/607 (32%), Positives = 344/607 (56%), Gaps = 9/607 (1%)

Query: 2   ELAKRVFKSM-PELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           E A  +F+ M    +++SW+A+++ +A +  G + +  F  M +     +++  +   + 
Sbjct: 118 EKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRA 177

Query: 61  FANSGYIKAGQVVHAMAIRLG-CALDKFLSCSLVDMYSKCGLAD--NALKVFYRIKDPDV 117
            + + ++  G  +    I+ G    D  + C L+DM+ K G  D  +A KVF ++ + + 
Sbjct: 178 CSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVK-GRGDLVSAFKVFEKMPERNA 236

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           V W  +IT L Q G   EA  +F  M  S  +P++F L+ ++ A         G+ +H+ 
Sbjct: 237 VTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQ 296

Query: 178 ICKYGFESDTLVGNALVSMYME---NGRVSYGSRVFEAIAHQDSVSWNALFSRF-QDYES 233
             ++G   D  VG  L++MY +   +G +    ++F+ I   +  SW A+ + + Q    
Sbjct: 297 AIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGY 356

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
            ++ L +F  M+L    PN  TF   LKAC++L+ +  G+Q+  H +K      + V  S
Sbjct: 357 DEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANS 416

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           L+ MY +SG ++DA  AFD L  K+L +Y  +I +YA+   +E AL+ F ++  +G+ ++
Sbjct: 417 LISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGAS 476

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
            FT AS L+G + + T+  G  +H+  +K+G  L+  V  AL++MY++CG+I+ A  VF+
Sbjct: 477 AFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFE 536

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
               R+  SW  +I G+ KHG   +ALE F  ML+EG  P+E+T++ VLSACSH+GL+ E
Sbjct: 537 DMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNE 596

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           G KHF S+   +G+ P ++H+AC++DILGR+G  +E   FI       +ALVW   LGAC
Sbjct: 597 GWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGAC 656

Query: 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPS 593
             HGN+EL +  A+ ++E EP   + Y+  S++ A+  +W++ S +R  +  + + KE  
Sbjct: 657 RVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAG 716

Query: 594 CSWIEVD 600
           CSW+EV+
Sbjct: 717 CSWVEVE 723



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 149/523 (28%), Positives = 256/523 (48%), Gaps = 18/523 (3%)

Query: 53  SLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI 112
           + S  LK    +     G +VH    +    LD     SL+ +YSKCG  + A  +F  +
Sbjct: 68  TYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFRLM 127

Query: 113 -KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG 171
               D+++W A+++C         A   F  M E+   PN++   +  RA +       G
Sbjct: 128 GSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVG 187

Query: 172 ESIHAVICKYGF-ESDTLVGNALVSMYME-NGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
           +SI   + K G+ +SD  VG  L+ M+++  G +    +VFE +  +++V+W  + +R  
Sbjct: 188 DSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLM 247

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
            +    + + +F  M+  G++P+  T   ++ AC+++  +  G+QLH+  I+H L  +  
Sbjct: 248 QFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRC 307

Query: 290 VGTSLVDMYDK---SGCLEDAGVAFDSLANKDLFAYTAIITSYAQ-AGEAEMALKCFRKM 345
           VG  L++MY K    G +  A   FD + + ++F++TA+IT Y Q  G  E AL  FR M
Sbjct: 308 VGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGM 367

Query: 346 RLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSI 405
            L  +  N FT +S L  C+ +A L  G  + + AVK G      V+ +L++MYA+ G I
Sbjct: 368 ILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRI 427

Query: 406 DDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC 465
           DDA   F     ++  S+N +I  Y K+   E+ALE F  + D+G      TF  +LS  
Sbjct: 428 DDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGA 487

Query: 466 SHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNAL 524
           + +G I +G++ H   IK    +  ++ +   +I +  R G   E    + E     N +
Sbjct: 488 ASIGTIGKGEQIHARVIKSGLKLNQSVCN--ALISMYSRCGNI-ESAFQVFEDMEDRNVI 544

Query: 525 VWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            W +++   + HG        A + LEL  KM    V P++++
Sbjct: 545 SWTSIITGFAKHGF-------ATQALELFHKMLEEGVRPNEVT 580



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 153/333 (45%), Gaps = 10/333 (3%)

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            M+ +G  P++ T+ + LK C        G  +H    +  L  + V   SL+ +Y K G
Sbjct: 56  HMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCG 115

Query: 303 CLEDAGVAFDSL-ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
             E A   F  + +++DL +++A+++ +A       AL  F  M   G   NE+  A+  
Sbjct: 116 QWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAAT 175

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLL-DMFVSTALVAMYAKC-GSIDDAEAVFKGSALRD 419
             CS    ++ G  +    +KTG+L  D+ V   L+ M+ K  G +  A  VF+    R+
Sbjct: 176 RACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERN 235

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HF 478
             +W +MI   ++ G   +A++ F  M+  GY PD  T   V+SAC++M L+  G++ H 
Sbjct: 236 AVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHS 295

Query: 479 SSIKKIYGITPTIKHFACMIDILGRA---GKFTEIENFITETKLTPNALVWENLLGACSW 535
            +I+  +G+T       C+I++  +    G        I +  L  N   W  ++     
Sbjct: 296 QAIR--HGLTLDRCVGCCLINMYAKCSVDGSMCAARK-IFDQILDHNVFSWTAMITGYVQ 352

Query: 536 HGNIELDEKDAEKLLELEPKMESNYVFPSDISA 568
            G  + +  D  + + L   + +++ F S + A
Sbjct: 353 KGGYDEEALDLFRGMILTHVIPNHFTFSSTLKA 385



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 7/198 (3%)

Query: 333 GEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS 392
           G    A+     M  +G   +  T +  L  C    +   G L+H    ++   LD    
Sbjct: 45  GRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTL 104

Query: 393 TALVAMYAKCGSIDDAEAVFK--GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
            +L+++Y+KCG  + A ++F+  GS+ RD  SW+ M+  +  + +G +AL  F  M++ G
Sbjct: 105 NSLISLYSKCGQWEKATSIFRLMGSS-RDLISWSAMVSCFANNNMGFRALLTFVDMIENG 163

Query: 451 YVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDIL--GRAGKFT 508
           Y P+E  F     ACS    +  G   F  + K   +   +     +ID+   GR    +
Sbjct: 164 YYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVS 223

Query: 509 EIENFITETKLTPNALVW 526
             + F  E     NA+ W
Sbjct: 224 AFKVF--EKMPERNAVTW 239



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 36/173 (20%), Positives = 76/173 (43%), Gaps = 7/173 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A +VF+ M + NV+SW +++ G+A+ G   + + LF  M +   + ++ +   VL  
Sbjct: 528 IESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSA 587

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            ++ G +  G +   +M    G          +VD+  + G    A++    +    D +
Sbjct: 588 CSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADAL 647

Query: 119 AWGAIITCLDQQGCCQ---EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ 168
            W   +      G  +    AAK+  ++ +    P  ++L S + A+    D+
Sbjct: 648 VWRTFLGACRVHGNLELGKHAAKM--IIEQEPHDPAAYILLSNLYASISKWDE 698


>gi|108712052|gb|ABF99847.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1221

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/592 (33%), Positives = 324/592 (54%), Gaps = 9/592 (1%)

Query: 11  MPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAG 70
           MP  NVV+W ++++GY  +G  +  + +F  M +     + F+ +  L   A+ G ++AG
Sbjct: 1   MPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAG 60

Query: 71  QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
           + VH++A+R G A D ++   L++MYS+CG    A +VF R+  PDVV + ++I+   + 
Sbjct: 61  EQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRN 120

Query: 131 GCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA-VICKYGFESDTLV 189
           G  + AA+    M +  +KPN+  +T+++ A         G+ IH  +I K G  S ++ 
Sbjct: 121 GEFELAAEALIQMLKQGLKPNEHTMTTILTACPRV----LGQQIHGYLIKKIGLRSQSVY 176

Query: 190 GN-ALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG 248
            + AL+  Y  NG       VF+++  ++ VSW ++   +      ++ L++F  M+ +G
Sbjct: 177 SSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEG 236

Query: 249 FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
             PN     ++L AC S   +G G+QLH   IKH L  +  V  +L+ MY ++G +E+  
Sbjct: 237 VDPNEFALSIVLGACGS---IGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELE 293

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
              + + N DL ++T  I++  Q G  E A+    +M  EG   N +  +S L+ C+ VA
Sbjct: 294 AMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVA 353

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
           +L  G   H +A+K G   ++    AL+ MY+KCG +  A   F      D  SWN +I 
Sbjct: 354 SLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIH 413

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGIT 488
           G+ +HG   KALE F  M   G  PD+ TF+ VL  C+H G++EEG+  F  +   Y  T
Sbjct: 414 GHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFT 473

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEK 548
           P   H+ACMID+LGR G+F E    I +    P+AL+W+ LL +C  H N+++ +  A++
Sbjct: 474 PAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADR 533

Query: 549 LLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           L+EL  +  ++YV  S+I A  G W D   VR  +   G+KK+  CSWIE++
Sbjct: 534 LMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEIN 585



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 172/388 (44%), Gaps = 39/388 (10%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           +LAK VF S+   NVVSW +++  Y   G  ++ + +F  M       ++F+LS VL   
Sbjct: 192 KLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGA- 250

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
              G I  G+ +H  AI+     D  +S +L+ MY + GL +    +  +I++PD+V+W 
Sbjct: 251 --CGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWT 308

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
             I+   Q G  ++A  +   M      PN +  +S++ +  +      G   H +  K 
Sbjct: 309 TAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKL 368

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G +S+   GNAL++MY + G++      F+ +   D  SWN+L      +   ++ L +F
Sbjct: 369 GCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVF 428

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTI-KHSLDGNHVVGTSLVDMYDK 300
            +M   G KP+  TF+ +L  C+    V  G+      I ++S          ++DM  +
Sbjct: 429 SKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGR 488

Query: 301 SGCLEDA-----GVAFDS------------------------------LANKDLFAYTAI 325
           +G  ++A      + F+                               L+++D  +Y  +
Sbjct: 489 NGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLM 548

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSN 353
              YA  GE E A K  R+M   G+K +
Sbjct: 549 SNIYAMHGEWEDARKVRRRMDETGVKKD 576



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 4/127 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A+  F  M   +V SWN+L++G+A+ GD  K + +F  M+    K    +   VL G
Sbjct: 390 MGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMG 449

Query: 61  FANSGYIKAGQVVHAMAIRLG--CALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDV 117
             +SG ++ G++   + I            +C ++DM  + G  D AL++   +  +PD 
Sbjct: 450 CNHSGMVEEGELFFRLMIDQYSFTPAPSHYAC-MIDMLGRNGRFDEALRMINDMPFEPDA 508

Query: 118 VAWGAII 124
           + W  ++
Sbjct: 509 LIWKTLL 515


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/607 (32%), Positives = 343/607 (56%), Gaps = 9/607 (1%)

Query: 2   ELAKRVFKSM-PELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           E A  +F+ M    +++SW+A+++ +A +  G + +  F  M +     +++  +   + 
Sbjct: 118 EKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRA 177

Query: 61  FANSGYIKAGQVVHAMAIRLG-CALDKFLSCSLVDMYSKCGLAD--NALKVFYRIKDPDV 117
            + + ++  G  +    ++ G    D  + C L+DM+ K G  D  +A KVF ++ + + 
Sbjct: 178 CSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVK-GRGDLVSAFKVFEKMPERNA 236

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           V W  +IT L Q G   EA  +F  M  S  +P++F L+ ++ A         G+ +H+ 
Sbjct: 237 VTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQ 296

Query: 178 ICKYGFESDTLVGNALVSMYME---NGRVSYGSRVFEAIAHQDSVSWNALFSRF-QDYES 233
             ++G   D  VG  L++MY +   +G +    ++F+ I   +  SW A+ + + Q    
Sbjct: 297 AIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGY 356

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
            ++ L +F  M+L    PN  TF   LKAC++L+ +  G+Q+  H +K      + V  S
Sbjct: 357 DEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANS 416

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           L+ MY +SG ++DA  AFD L  K+L +Y  +I +YA+   +E AL+ F ++  +G+ ++
Sbjct: 417 LISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGAS 476

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
            FT AS L+G + + T+  G  +H+  +K+G  L+  V  AL++MY++CG+I+ A  VF+
Sbjct: 477 AFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFE 536

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
               R+  SW  +I G+ KHG   +ALE F  ML+EG  P+ +T++ VLSACSH+GL+ E
Sbjct: 537 DMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNE 596

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           G KHF S+   +G+ P ++H+ACM+DILGR+G  +E   FI       +ALVW   LGAC
Sbjct: 597 GWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGAC 656

Query: 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPS 593
             HGN+EL +  A+ ++E EP   + Y+  S++ A+  +W++ S +R  +  + + KE  
Sbjct: 657 RVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAG 716

Query: 594 CSWIEVD 600
           CSW+EV+
Sbjct: 717 CSWVEVE 723



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 150/523 (28%), Positives = 257/523 (49%), Gaps = 18/523 (3%)

Query: 53  SLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI 112
           + S  LK    +     G +VH    +    LD     SL+ +YSKCG  + A  +F  +
Sbjct: 68  TYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLM 127

Query: 113 -KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG 171
               D+++W A+++C         A   F  M E+   PN++   +  RA +       G
Sbjct: 128 GSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVG 187

Query: 172 ESIHAVICKYGF-ESDTLVGNALVSMYME-NGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
           +SI   + K G+ +SD  VG  L+ M+++  G +    +VFE +  +++V+W  + +R  
Sbjct: 188 DSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLM 247

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
            +    + + +F +M+L G++P+  T   ++ AC+++  +  G+QLH+  I+H L  +  
Sbjct: 248 QFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRC 307

Query: 290 VGTSLVDMYDK---SGCLEDAGVAFDSLANKDLFAYTAIITSYAQ-AGEAEMALKCFRKM 345
           VG  L++MY K    G +  A   FD + + ++F++TA+IT Y Q  G  E AL  FR M
Sbjct: 308 VGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGM 367

Query: 346 RLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSI 405
            L  +  N FT +S L  C+ +A L  G  + + AVK G      V+ +L++MYA+ G I
Sbjct: 368 ILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRI 427

Query: 406 DDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC 465
           DDA   F     ++  S+N +I  Y K+   E+ALE F  + D+G      TF  +LS  
Sbjct: 428 DDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGA 487

Query: 466 SHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNAL 524
           + +G I +G++ H   IK    +  ++ +   +I +  R G   E    + E     N +
Sbjct: 488 ASIGTIGKGEQIHARVIKSGLKLNQSVCN--ALISMYSRCGNI-ESAFQVFEDMEDRNVI 544

Query: 525 VWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            W +++   + HG        A + LEL  KM    V P+ ++
Sbjct: 545 SWTSIITGFAKHGF-------ATQALELFHKMLEEGVRPNLVT 580



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 10/333 (3%)

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            M+ +G  P++ T+ + LK C        G  +H    +  L  + V   SL+ +Y K G
Sbjct: 56  HMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCG 115

Query: 303 CLEDAGVAFDSL-ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
             E A   F  + +++DL +++A+++ +A       AL  F  M   G   NE+  A+  
Sbjct: 116 QWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAAT 175

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLL-DMFVSTALVAMYAKC-GSIDDAEAVFKGSALRD 419
             CS    ++ G  +    VKTG+L  D+ V   L+ M+ K  G +  A  VF+    R+
Sbjct: 176 RACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERN 235

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HF 478
             +W +MI   ++ G   +A++ F  M+  GY PD  T   V+SAC++M L+  G++ H 
Sbjct: 236 AVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHS 295

Query: 479 SSIKKIYGITPTIKHFACMIDILGRA---GKFTEIENFITETKLTPNALVWENLLGACSW 535
            +I+  +G+T       C+I++  +    G        I +  L  N   W  ++     
Sbjct: 296 QAIR--HGLTLDRCVGCCLINMYAKCSVDGSMCAARK-IFDQILDHNVFSWTAMITGYVQ 352

Query: 536 HGNIELDEKDAEKLLELEPKMESNYVFPSDISA 568
            G  + +  D  + + L   + +++ F S + A
Sbjct: 353 KGGYDEEALDLFRGMILTHVIPNHFTFSSTLKA 385



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 7/198 (3%)

Query: 333 GEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS 392
           G    A+     M  +G   +  T +  L  C    +   G L+H    ++   LD    
Sbjct: 45  GRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTL 104

Query: 393 TALVAMYAKCGSIDDAEAVFK--GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
            +L+++Y+KCG  + A ++F+  GS+ RD  SW+ M+  +  + +G +AL  F  M++ G
Sbjct: 105 NSLISLYSKCGQWEKATSIFQLMGSS-RDLISWSAMVSCFANNNMGFRALLTFVDMIENG 163

Query: 451 YVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDIL--GRAGKFT 508
           Y P+E  F     ACS    +  G   F  + K   +   +     +ID+   GR    +
Sbjct: 164 YYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVS 223

Query: 509 EIENFITETKLTPNALVW 526
             + F  E     NA+ W
Sbjct: 224 AFKVF--EKMPERNAVTW 239



 Score = 42.4 bits (98), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 76/173 (43%), Gaps = 7/173 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A +VF+ M + NV+SW +++ G+A+ G   + + LF  M +   + +  +   VL  
Sbjct: 528 IESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSA 587

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            ++ G +  G +   +M    G          +VD+  + G    A++    +    D +
Sbjct: 588 CSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADAL 647

Query: 119 AWGAIITCLDQQGCCQ---EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ 168
            W   +      G  +    AAK+  ++ +    P  ++L S + A+T   D+
Sbjct: 648 VWRTFLGACRVHGNLELGKHAAKM--IIEQEPHDPAAYILLSNLYASTSKWDE 698


>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 887

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/601 (32%), Positives = 334/601 (55%), Gaps = 2/601 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A++VF +M   NVVSW ++++GY+++G     + ++  M    +   + +  +V+K 
Sbjct: 210 MKDARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKA 269

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              +G I  G+ +HA  I+           +L+ MY+  G  ++A  VF RI   D+++W
Sbjct: 270 CYIAGDIDLGRQLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIPTKDLISW 329

Query: 121 GAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           G +IT   Q G   EA  +F +L+R+ + +PN+F+  S+  A +   +   G+ +H +  
Sbjct: 330 GTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYGKQVHGMCV 389

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K+G   +   G +L  MY + G +      F  I + D VSWNA+ + F D    ++ + 
Sbjct: 390 KFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNAIIAAFADNGDANEAID 449

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
            F QM+  G  P+  T+I +L  C S   +  G+Q+H++ +K   D    V  SL+ MY 
Sbjct: 450 FFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIHSYIVKIGFDKEITVCNSLLTMYT 509

Query: 300 KSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
           K   L DA   F  ++ N +L ++ AI+++  Q  +     + +++M   G K +  T+ 
Sbjct: 510 KCSHLHDALNVFRDISRNANLVSWNAILSACLQKKQEGETFRLYKEMHFSGNKPDSITIT 569

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           + L  C+ + +L  G  +H  ++K+G +LD+ V   L+ MYAKCGS+  A  VF  +   
Sbjct: 570 TLLGTCAELTSLGVGNQVHCYSIKSGLILDVSVCNGLIDMYAKCGSLKHARDVFDSTQNL 629

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D  SW+ +I GY + GLG +AL  FR+M + G  P+E+T++  LSACSH+GL+EEG + +
Sbjct: 630 DIVSWSSLIVGYAQCGLGHEALNLFRIMTNLGVQPNEVTYLGALSACSHIGLVEEGWRLY 689

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            S++  +GI PT +HF+C++D+L RAG   E E FI ++ L  +   W+ LL AC  H N
Sbjct: 690 KSMETEHGIPPTREHFSCIVDLLARAGCLHEAETFIQKSGLDADITAWKTLLAACKTHNN 749

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           +++ E+ A  +L+L+P   +  V   +I A+ G W + + +R L+   G++K P  SWIE
Sbjct: 750 VDIAERGAGNILKLDPSNSAAMVMLCNIHASAGNWEEVAKLRKLMKQMGVQKVPGQSWIE 809

Query: 599 V 599
           V
Sbjct: 810 V 810



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 140/492 (28%), Positives = 236/492 (47%), Gaps = 6/492 (1%)

Query: 42  MKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGL 101
           +K+    F   + ++++   AN   +   + +H   ++        L   +++MY KCG 
Sbjct: 150 LKNSNSHFEPSTYTSLVLACANFRSLDYAKKIHDHVLKSNYQPSIILQNHMINMYGKCGS 209

Query: 102 ADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRA 161
             +A KVF  ++ P+VV+W ++I+   Q G   +A  ++  M  S   P+Q    S+++A
Sbjct: 210 MKDARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKA 269

Query: 162 TTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSW 221
               GD   G  +HA + K  F       NAL+SMY   G++ + S VF  I  +D +SW
Sbjct: 270 CYIAGDIDLGRQLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIPTKDLISW 329

Query: 222 NALFSRFQDYESPDQGLRIFYQMLLKG-FKPNMCTFIVILKACSSLSDVGFGKQLHAHTI 280
             + + +       + L +F  +L +G ++PN   F  +  ACSSL ++ +GKQ+H   +
Sbjct: 330 GTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYGKQVHGMCV 389

Query: 281 KHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALK 340
           K  L  N   G SL DMY K G L  A +AF  + N D+ ++ AII ++A  G+A  A+ 
Sbjct: 390 KFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNAIIAAFADNGDANEAID 449

Query: 341 CFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYA 400
            FR+M   G+  +  T  S L  C     L  GR +HS  VK G   ++ V  +L+ MY 
Sbjct: 450 FFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIHSYIVKIGFDKEITVCNSLLTMYT 509

Query: 401 KCGSIDDAEAVFKG-SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFV 459
           KC  + DA  VF+  S   +  SWN ++   ++     +    ++ M   G  PD IT  
Sbjct: 510 KCSHLHDALNVFRDISRNANLVSWNAILSACLQKKQEGETFRLYKEMHFSGNKPDSITIT 569

Query: 460 VVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK 518
            +L  C+ +  +  G + H  SIK   G+   +     +ID+  + G      +    T+
Sbjct: 570 TLLGTCAELTSLGVGNQVHCYSIKS--GLILDVSVCNGLIDMYAKCGSLKHARDVFDSTQ 627

Query: 519 LTPNALVWENLL 530
              + + W +L+
Sbjct: 628 -NLDIVSWSSLI 638



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 132/480 (27%), Positives = 221/480 (46%), Gaps = 21/480 (4%)

Query: 124 ITCLDQQGCCQEAAKIFNLMRESS---VKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
           I  L +Q   +EA + F+   ++S    +P+ +  TSLV A          + IH  + K
Sbjct: 130 IIFLCKQHHYKEALEAFDFHLKNSNSHFEPSTY--TSLVLACANFRSLDYAKKIHDHVLK 187

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             ++   ++ N +++MY + G +    +VF+ +   + VSW ++ S +      +  + +
Sbjct: 188 SNYQPSIILQNHMINMYGKCGSMKDARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIM 247

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG-TSLVDMYD 299
           + QM   G  P+  TF  ++KAC    D+  G+QLHAH IK S  G+H+    +L+ MY 
Sbjct: 248 YIQMTRSGQFPDQLTFGSVIKACYIAGDIDLGRQLHAHVIK-SWFGHHLTSQNALISMYT 306

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI-KSNEFTLA 358
             G +E A   F  +  KDL ++  +IT Y Q G    AL  FR +  +G  + NEF   
Sbjct: 307 NFGQIEHASNVFTRIPTKDLISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFG 366

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S  + CS +  L  G+ +H + VK G   ++F   +L  MYAK G +  A+  F      
Sbjct: 367 SVFSACSSLLELEYGKQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNP 426

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D  SWN +I  +  +G   +A++ FR M+  G  PD IT++ +L  C     + +G++  
Sbjct: 427 DIVSWNAIIAAFADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIH 486

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           S I KI G    I     ++ +  +     +  N   +     N + W  +L AC     
Sbjct: 487 SYIVKI-GFDKEITVCNSLLTMYTKCSHLHDALNVFRDISRNANLVSWNAILSAC----- 540

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
             L +K   +   L  +M  +   P  I+ T        G  A L+S G+  +  C  I+
Sbjct: 541 --LQKKQEGETFRLYKEMHFSGNKPDSITITT-----LLGTCAELTSLGVGNQVHCYSIK 593


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/608 (34%), Positives = 329/608 (54%), Gaps = 17/608 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLF--------CSMKDMEKKFSKFSLS 55
           A+ +F +MP+  VV+W  L+  YA +    +   LF        C++ D        + +
Sbjct: 98  ARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPD------HVTFT 151

Query: 56  TVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLA--DNALKVFYRIK 113
           T+L G  ++    A   VHA A++LG   + FL+ S V + S C +   D A  +F  I 
Sbjct: 152 TLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIP 211

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES 173
           + D V +  +IT  ++ G   E+  +F  MR+S  +P+ F  + +++A     D   G+ 
Sbjct: 212 EKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQ 271

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           +HA+    GF  D  VGN ++  Y ++ RV     +F+ +   D VS+N + S +   + 
Sbjct: 272 LHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQ 331

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
            +  L  F +M   GF      F  +L   ++LS +  G+QLH   +  + D    VG S
Sbjct: 332 YEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNS 391

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           LVDMY K    E+A + F SL  +   ++TA+I+ Y Q G     LK F KMR   ++++
Sbjct: 392 LVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRAD 451

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
           + T A+ L   +  A+L  G+ LH+  +++G+L ++F  + LV MYAKCGSI DA  VF+
Sbjct: 452 QSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFE 511

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
               R+  SWN +I  +  +G GE A+ AF  M++ G  PD ++ + VL+ACSH G +E+
Sbjct: 512 EMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQ 571

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           G ++F ++  IYGITP  KH+ACM+D+LGR G+F E E  + E    P+ ++W ++L AC
Sbjct: 572 GTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNAC 631

Query: 534 SWHGNIELDEKDAEKLLELEP-KMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEP 592
             H N  L E+ AEKL  +E  +  + YV  S+I A  G W     V+  +  +GIKK P
Sbjct: 632 RIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVP 691

Query: 593 SCSWIEVD 600
           + SW+EV+
Sbjct: 692 AYSWVEVN 699



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 140/510 (27%), Positives = 233/510 (45%), Gaps = 9/510 (1%)

Query: 52  FSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSC-SLVDMYSKCGLADNALKVFY 110
           F   T    F     ++ GQV  A  +         +S  +++  + K G   +A  +F 
Sbjct: 44  FDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFD 103

Query: 111 RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESS--VKPNQFVLTSLVRATTETGDQ 168
            + D  VV W  ++    +     EA K+F  M  SS    P+    T+L+    +   Q
Sbjct: 104 AMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQ 163

Query: 169 RCGESIHAVICKYGFESDTL--VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS 226
                +HA   K GF+++    V N L+  Y E  R+     +FE I  +DSV++N L +
Sbjct: 164 NAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLIT 223

Query: 227 RFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDG 286
            ++      + + +F +M   G +P+  TF  +LKA   L D   G+QLHA ++      
Sbjct: 224 GYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSR 283

Query: 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR 346
           +  VG  ++D Y K   + +  + FD +   D  +Y  +I+SY+QA + E +L  FR+M+
Sbjct: 284 DASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQ 343

Query: 347 LEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSID 406
             G     F  A+ L+  + +++L  GR LH  A+       + V  +LV MYAKC   +
Sbjct: 344 CMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFE 403

Query: 407 DAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
           +AE +FK    R T SW  +I GYV+ GL    L+ F  M       D+ TF  VL A +
Sbjct: 404 EAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASA 463

Query: 467 HMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVW 526
               +  GK+  + I +  G    +   + ++D+  + G   +      E     NA+ W
Sbjct: 464 SFASLLLGKQLHAFIIR-SGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMP-DRNAVSW 521

Query: 527 ENLLGACSWHGNIELDEKDAEKLLE--LEP 554
             L+ A + +G+ E       K++E  L+P
Sbjct: 522 NALISAHADNGDGEAAIGAFAKMIESGLQP 551



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 124/525 (23%), Positives = 227/525 (43%), Gaps = 60/525 (11%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++LA  +F+ +PE + V++N L+ GY + G   + +HLF  M+    + S F+ S VLK 
Sbjct: 200 LDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKA 259

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                    GQ +HA+++  G + D  +   ++D YSK         +F  + + D V++
Sbjct: 260 VVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSY 319

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+   Q    + +   F  M+        F   +++         + G  +H     
Sbjct: 320 NVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALL 379

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              +S   VGN+LV MY +         +F+++  + +VSW AL S +        GL++
Sbjct: 380 ATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKL 439

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M     + +  TF  +LKA +S + +  GKQLHA  I+     N   G+ LVDMY K
Sbjct: 440 FTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAK 499

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G ++DA   F+ + +++  ++ A+I+++A  G+ E A+  F KM   G++ +  ++   
Sbjct: 500 CGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGV 559

Query: 361 LNGCSPVATLANG-------RLLHSIAVKTGH---LLDMFVSTALVAMYAKCGSIDDAEA 410
           L  CS    +  G         ++ I  K  H   +LD+                     
Sbjct: 560 LTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLL-------------------- 599

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC---SH 467
                                  G   +  EA ++M +  + PDEI +  VL+AC    +
Sbjct: 600 -----------------------GRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKN 636

Query: 468 MGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIEN 512
             L E   +   S++K+         +  M +I   AG++ ++ +
Sbjct: 637 QSLAERAAEKLFSMEKLRDAAA----YVSMSNIYAAAGEWEKVRD 677



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 159/374 (42%), Gaps = 38/374 (10%)

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS---RFQD 230
           + A I K GF++DT   N +V   +  G+VS   +V++ + H+++VS N + S   +  D
Sbjct: 35  VDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGD 94

Query: 231 YESP----------------------------DQGLRIFYQMLLKG--FKPNMCTFIVIL 260
             S                             D+  ++F QM        P+  TF  +L
Sbjct: 95  VSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLL 154

Query: 261 KACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS--LVDMYDKSGCLEDAGVAFDSLANKD 318
             C+         Q+HA  +K   D N  +  S  L+  Y +   L+ A V F+ +  KD
Sbjct: 155 PGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKD 214

Query: 319 LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHS 378
              +  +IT Y + G    ++  F KMR  G + ++FT +  L     +   A G+ LH+
Sbjct: 215 SVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHA 274

Query: 379 IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEK 438
           ++V TG   D  V   ++  Y+K   + +   +F      D  S+N++I  Y +    E 
Sbjct: 275 LSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEA 334

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFA-CM 497
           +L  FR M   G+      F  +LS  +++  ++ G++     + +     +I H    +
Sbjct: 335 SLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQ--LHCQALLATADSILHVGNSL 392

Query: 498 IDILGRAGKFTEIE 511
           +D+  +   F E E
Sbjct: 393 VDMYAKCEMFEEAE 406


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/597 (32%), Positives = 327/597 (54%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F  MP  + V WN +LNGY ++GD      +F  M+  E   +  + + VL   A+
Sbjct: 201 ARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCAS 260

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              I  G  +H + +  G  +D  ++ +L+ MY+KCG   +A ++F  +   D+V W  +
Sbjct: 261 EIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGM 320

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   Q G   EA+ +F+ M  + +KP+    +S +   +E    R G+ IH  I + G 
Sbjct: 321 ISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGV 380

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D  + +AL+ +Y +   V    ++F+     D V   A+ S +      +  L IF  
Sbjct: 381 SLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRW 440

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           +L +  + N  T   +L AC+ L+ +  GK+LH H +K+   G+  VG++++DMY K G 
Sbjct: 441 LLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGR 500

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L+ A   F  +++KD   + ++ITS +Q G+ E A+  FR+M + G K +  ++++ L+ 
Sbjct: 501 LDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSA 560

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +  L  G+ +H+  ++     D+F  +AL+ MY+KCG++D A  VF     ++  SW
Sbjct: 561 CANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSW 620

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I  Y  HG  + +L  F  ML +G  PD +TF+ ++SAC H G ++EG  +F  + +
Sbjct: 621 NSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTE 680

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
             GI   ++H+ACM+D+ GRAG+  E    I     +P+A VW  LLGAC  HGN+EL E
Sbjct: 681 ELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAE 740

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
             +  L +L+P+    YV  S++ A  G+W     +R+L+  +G++K P CSWI+V+
Sbjct: 741 VASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGCSWIDVN 797



 Score =  214 bits (545), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 142/537 (26%), Positives = 252/537 (46%), Gaps = 2/537 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AK +F  +       WN ++ G+   G     +  +  M        K++   V+K    
Sbjct: 100 AKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGG 159

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G+VVH     +G  LD F+  SL+  YS+ G   +A  +F R+   D V W  +
Sbjct: 160 LNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVM 219

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    + G    A  +F  MR +   PN      ++           G  +H ++   G 
Sbjct: 220 LNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGL 279

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E D+ V N L++MY + G +    R+F+ +   D V+WN + S +      D+   +F++
Sbjct: 280 EMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHE 339

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M+    KP+  TF   L   S  + +  GK++H + I++ +  +  + ++L+D+Y K   
Sbjct: 340 MISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRD 399

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +E A   FD     D+   TA+I+ Y   G    AL+ FR +  E +++N  TLAS L  
Sbjct: 400 VEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPA 459

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +A L  G+ LH   +K GH    +V +A++ MYAKCG +D A   F G + +D   W
Sbjct: 460 CAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCW 519

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N MI    ++G  E+A++ FR M   G   D ++    LSAC+++  +  GK+  + + +
Sbjct: 520 NSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMR 579

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
                  +   + +ID+  + G   ++   + +T    N + W +++ A   HG ++
Sbjct: 580 -GAFRSDLFAESALIDMYSKCGNL-DLACRVFDTMEEKNEVSWNSIIAAYGNHGRLK 634



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 132/489 (26%), Positives = 225/489 (46%), Gaps = 6/489 (1%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
           L ++L+   +   +  G+  HA  +  G   +  L   L+ MY  CG   +A  +FY+++
Sbjct: 49  LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR 108

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES 173
                 W  +I      G    A   +  M      P+++    +++A         G  
Sbjct: 109 LWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRV 168

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           +H  I   GFE D  VG++L+  Y ENG +     +F+ +  +D V WN + + +     
Sbjct: 169 VHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGD 228

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
            D    +F +M      PN  TF  +L  C+S   + FG QLH   +   L+ +  V  +
Sbjct: 229 WDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANT 288

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           L+ MY K G L DA   FD +   DL  +  +I+ Y Q G  + A   F +M    +K +
Sbjct: 289 LLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPD 348

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
             T +S L   S  ATL  G+ +H   ++ G  LD+F+ +AL+ +Y KC  ++ A  +F 
Sbjct: 349 SITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFD 408

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
                D      MI GYV +G+   ALE FR +L E    + +T   VL AC+ +  +  
Sbjct: 409 QRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTL 468

Query: 474 GKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFT-EIENFITETKLTPNALVWENLLG 531
           GK+ H   +K  +G +  +   + ++D+  + G+     + FI  +    +A+ W +++ 
Sbjct: 469 GKELHGHILKNGHGGSCYVG--SAIMDMYAKCGRLDLAHQTFIGISD--KDAVCWNSMIT 524

Query: 532 ACSWHGNIE 540
           +CS +G  E
Sbjct: 525 SCSQNGKPE 533



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 159/337 (47%), Gaps = 3/337 (0%)

Query: 140 FNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYME 199
           F++  + S+ P    L S+++  T+      G   HA +   G   + ++G  L+ MY+ 
Sbjct: 37  FSIHNDDSLAPQ---LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVL 93

Query: 200 NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVI 259
            G       +F  +    S  WN +   F      D  L  +++ML  G  P+  TF  +
Sbjct: 94  CGAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYV 153

Query: 260 LKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL 319
           +KAC  L+ V  G+ +H        + +  VG+SL+  Y ++GC+ DA   FD + +KD 
Sbjct: 154 IKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDG 213

Query: 320 FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSI 379
             +  ++  Y + G+ + A   F +MR      N  T A  L+ C+    +  G  LH +
Sbjct: 214 VLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGL 273

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
            V +G  +D  V+  L+AMYAKCG + DA  +F      D  +WN MI GYV++G  ++A
Sbjct: 274 VVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEA 333

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
              F  M+     PD ITF   L   S    + +GK+
Sbjct: 334 SCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKE 370



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 164/340 (48%), Gaps = 2/340 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E+A+++F     +++V   A+++GY  +G     + +F  +     + +  +L++VL  
Sbjct: 400 VEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPA 459

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    +  G+ +H   ++ G     ++  +++DMY+KCG  D A + F  I D D V W
Sbjct: 460 CAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCW 519

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++IT   Q G  +EA  +F  M  +  K +   +++ + A         G+ IHA + +
Sbjct: 520 NSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMR 579

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             F SD    +AL+ MY + G +    RVF+ +  ++ VSWN++ + + ++      L +
Sbjct: 580 GAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNL 639

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFG-KQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           F+ ML  G +P+  TF+ I+ AC     V  G       T +  +         +VD++ 
Sbjct: 640 FHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFG 699

Query: 300 KSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMA 338
           ++G L +A    +S+  + D   +  ++ +    G  E+A
Sbjct: 700 RAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELA 739


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 216/600 (36%), Positives = 333/600 (55%), Gaps = 5/600 (0%)

Query: 4   AKRVF-KSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           A+RVF ++  + N VSWN +++ + ++      + LF  M     + ++F  S V+    
Sbjct: 154 ARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACT 213

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
            S  ++AG+ VHAM +R G   D F + +LVDMYSK G    A  VF ++   DVV+W A
Sbjct: 214 GSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNA 273

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG--ESIHAVICK 180
            I+     G  Q A ++   M+ S + PN F L+S+++A    G         IH  + K
Sbjct: 274 FISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIK 333

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              +SD  +G ALV MY + G +    +VFE I  +D + WNAL S         + L +
Sbjct: 334 ACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSL 393

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS-LDGNHVVGTSLVDMYD 299
           F +M  +G   N  T   +LK+ +SL  +    Q+HA   K   L  +HVV   L+D Y 
Sbjct: 394 FCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVV-NGLIDSYW 452

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K  CL  A   F+  ++ ++ A+T++IT+ +Q    E A+K F +M  +G++ + F L+S
Sbjct: 453 KCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSS 512

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            LN C+ ++    G+ +H+  +K   + D+F   ALV  YAKCGSI+DA+  F G   + 
Sbjct: 513 LLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKG 572

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SW+ MIGG  +HG G++AL+ FR M+DE   P+ IT   VL AC+H GL++E K +FS
Sbjct: 573 VVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFS 632

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           S+K+++GI  T +H++CMID+LGRAGK  +    +       NA VW  LL A   H + 
Sbjct: 633 SMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAASRVHRDP 692

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           EL +  AEKL  LEP+    +V  ++  A+ G W++ + VR L+    +KKEP+ SW+E+
Sbjct: 693 ELGKLAAEKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRKLMKDSKVKKEPAMSWVEL 752



 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 170/578 (29%), Positives = 282/578 (48%), Gaps = 33/578 (5%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+RVF   P+   VSW++L+  Y+ +   ++ +  F +M+    + ++F+L  VLK   +
Sbjct: 56  ARRVFDETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAPD 115

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYR-IKDPDVVAWGA 122
           +G    G  VHA+A+  G + D F++ +LV MY   G  D A +VF    +D + V+W  
Sbjct: 116 AGL---GVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNG 172

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +++   +   C +A ++F  M  S V+PN+F  + +V A T + D   G  +HA++ + G
Sbjct: 173 MMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTG 232

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           ++ D    NALV MY + G +   + VF  +   D VSWNA  S    +      L +  
Sbjct: 233 YDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLL 292

Query: 243 QMLLKGFKPNMCTFIVILK--ACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           QM   G  PN+ T   ILK  A +       G+Q+H   IK   D +  +G +LVDMY K
Sbjct: 293 QMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAK 352

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L+DA   F+ +  KDL  + A+I+  +  G    +L  F +MR EG   N  TLA+ 
Sbjct: 353 YGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAV 412

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L   + +  +++   +H++A K G L D  V   L+  Y KC  +  A  VF+  +  + 
Sbjct: 413 LKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNI 472

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFS 479
            ++  MI    +   GE A++ F  ML +G  PD      +L+AC+ +   E+GK+ H  
Sbjct: 473 IAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAH 532

Query: 480 SIKKIYGITPTIKHFACMIDIL-GRAGKFT-----EIENFITETKLTPNALV--WENLLG 531
            IK+ +           M D+  G A  +T      IE+        P+  V  W  ++G
Sbjct: 533 LIKRKF-----------MTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSWSAMIG 581

Query: 532 ACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISAT 569
             + HG+        ++ L++  +M    + P+ I+ T
Sbjct: 582 GLAQHGH-------GKRALDVFRRMVDERIAPNHITLT 612



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/367 (32%), Positives = 194/367 (52%), Gaps = 2/367 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK- 59
           + +A  VF  +P+ +VVSWNA ++G    G  Q  + L   MK      + F+LS++LK 
Sbjct: 253 IHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKA 312

Query: 60  -GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
              A +G    G+ +H   I+     D ++  +LVDMY+K GL D+A KVF  I   D++
Sbjct: 313 CAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLL 372

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            W A+I+     GC  E+  +F  MR+     N+  L +++++T           +HA+ 
Sbjct: 373 LWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALA 432

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K GF SD+ V N L+  Y +   + Y ++VFE  +  + +++ ++ +     +  +  +
Sbjct: 433 EKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAI 492

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           ++F +ML KG +P+      +L AC+SLS    GKQ+HAH IK     +   G +LV  Y
Sbjct: 493 KLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTY 552

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G +EDA +AF  L +K + +++A+I   AQ G  + AL  FR+M  E I  N  TL 
Sbjct: 553 AKCGSIEDADLAFSGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLT 612

Query: 359 SCLNGCS 365
           S L  C+
Sbjct: 613 SVLCACN 619



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 133/438 (30%), Positives = 211/438 (48%), Gaps = 8/438 (1%)

Query: 50  SKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF 109
           S  S+S +L  +A +  +  G  +HA  ++ G  L  F +  L+  YSKC L  +A +VF
Sbjct: 3   SPESISPLLTRYAATQSLFLGAHIHAHLLKSGL-LHAFRN-HLLSFYSKCRLPGSARRVF 60

Query: 110 YRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
               DP  V+W +++T        +EA   F  MR   V+ N+F L  +++   + G   
Sbjct: 61  DETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAG--- 117

Query: 170 CGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF-EAIAHQDSVSWNALFSRF 228
            G  +HAV    G   D  V NALV+MY   G V    RVF EA   +++VSWN + S F
Sbjct: 118 LGVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAF 177

Query: 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH 288
              +     + +F +M+  G +PN   F  ++ AC+   D+  G+++HA  ++   D + 
Sbjct: 178 VKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDV 237

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
               +LVDMY K G +  A + F  +   D+ ++ A I+     G  + AL+   +M+  
Sbjct: 238 FTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSS 297

Query: 349 GIKSNEFTLASCLN--GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSID 406
           G+  N FTL+S L     +     A GR +H   +K     D ++  ALV MYAK G +D
Sbjct: 298 GLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLD 357

Query: 407 DAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
           DA  VF+    +D   WN +I G    G   ++L  F  M  EG   +  T   VL + +
Sbjct: 358 DARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTA 417

Query: 467 HMGLIEEGKKHFSSIKKI 484
            +  I +  +  +  +KI
Sbjct: 418 SLEAISDTTQVHALAEKI 435



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 81/166 (48%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A +VF+     N++++ +++   ++   G+  + LF  M     +   F LS++L  
Sbjct: 457 LRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNA 516

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+    + G+ VHA  I+     D F   +LV  Y+KCG  ++A   F  + D  VV+W
Sbjct: 517 CASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSW 576

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
            A+I  L Q G  + A  +F  M +  + PN   LTS++ A    G
Sbjct: 577 SAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAG 622


>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
 gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
          Length = 1026

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/602 (35%), Positives = 328/602 (54%), Gaps = 4/602 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME AK+VF ++ E NVV WNA+L GY ++G   +VM LF +MK        F+ S++L  
Sbjct: 378 MEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSA 437

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A   Y+  G  +H++ I+   A + F+  +LVDMY+K G  ++A + F  I++ D V+W
Sbjct: 438 CACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFELIRNRDNVSW 497

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             II    Q+    EA  +F  M    + P++  L S++ A         G+ +H +  K
Sbjct: 498 NVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGLEQGKQVHCLSVK 557

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G E+    G++L+ MY + G +    ++   +  +  VS NAL + +    + +Q + +
Sbjct: 558 TGQETKLYSGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNALIAGYAQI-NLEQAVNL 616

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLD-GNHVVGTSLVDMYD 299
           F  ML++G      TF  +L AC     +  G+Q+H+  +K  L   +  +G SL+ MY 
Sbjct: 617 FRDMLVEGINSTEITFASLLDACHEQQKLNLGRQIHSLILKMGLQLDDEFLGVSLLGMYM 676

Query: 300 KSGCLEDAGVAFDSLAN-KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            S    DA V F   +N K    +TA+I+  +Q   + +AL+ +++MR   +  ++ T  
Sbjct: 677 NSLRTTDASVLFSEFSNPKSAVVWTAMISGLSQNDCSVVALQLYKEMRSCNVLPDQATFV 736

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG-SAL 417
           S L  C+ V+++ +G   HS+   TG   D   S+ALV MYAKCG +  +  VFK  S  
Sbjct: 737 SALRACAVVSSIKDGTETHSLIFHTGFDSDELTSSALVDMYAKCGDVKSSMQVFKEMSRK 796

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           +D  SWN MI G+ K+G  E AL  F  M      PD++TF+ VL+ACSH G + EG+  
Sbjct: 797 KDVISWNSMIVGFAKNGYAEDALRVFDEMKQSHVTPDDVTFLGVLTACSHSGRVSEGRLI 856

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F  +  +YG+ P   H ACM+D+LGR G   E E FI +    P+A VW  +LGAC  HG
Sbjct: 857 FDMMVNLYGMQPRADHCACMVDLLGRWGSLKEAEEFINKLNFEPDAKVWATMLGACRIHG 916

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           +    ++ AEKL+ELEP+  S YV  S+I A  G W++ + +R  +  +G+KK P CSWI
Sbjct: 917 DDIRGQQAAEKLIELEPQNSSPYVLLSNIYAASGNWDEVNTLRREMREKGVKKLPGCSWI 976

Query: 598 EV 599
            V
Sbjct: 977 VV 978



 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 169/569 (29%), Positives = 284/569 (49%), Gaps = 11/569 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  +F  MP  NVV+WN +++G+A+ G G + +  F +M+    K ++ +L +VL  
Sbjct: 277 LDNASDLFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSA 336

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+   +  G +VHA A++ G   + ++  SLV MY+KCG  + A KVF  + + +VV W
Sbjct: 337 IASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLW 396

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A++    Q G   E  ++F  M+     P+ F  +S++ A         G  +H+VI K
Sbjct: 397 NAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQLHSVIIK 456

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             F S+  VGNALV MY ++G +    + FE I ++D+VSWN +   +   E   +   +
Sbjct: 457 NKFASNLFVGNALVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHL 516

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M L G  P+  +   IL AC+S+  +  GKQ+H  ++K   +     G+SL+DMY K
Sbjct: 517 FRRMNLLGILPDEVSLASILSACASVRGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAK 576

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G ++ A      +  + + +  A+I  YAQ    E A+  FR M +EGI S E T AS 
Sbjct: 577 CGAIDSAHKILACMPERSVVSMNALIAGYAQIN-LEQAVNLFRDMLVEGINSTEITFASL 635

Query: 361 LNGCSPVATLANGRLLHSIAVKTG-HLLDMFVSTALVAMYAKCGSIDDAEAVF-KGSALR 418
           L+ C     L  GR +HS+ +K G  L D F+  +L+ MY       DA  +F + S  +
Sbjct: 636 LDACHEQQKLNLGRQIHSLILKMGLQLDDEFLGVSLLGMYMNSLRTTDASVLFSEFSNPK 695

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
               W  MI G  ++     AL+ ++ M     +PD+ TFV  L AC+ +  I++G +  
Sbjct: 696 SAVVWTAMISGLSQNDCSVVALQLYKEMRSCNVLPDQATFVSALRACAVVSSIKDGTETH 755

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           S I    G        + ++D+  + G          E     + + W +++   + +G 
Sbjct: 756 SLIFHT-GFDSDELTSSALVDMYAKCGDVKSSMQVFKEMSRKKDVISWNSMIVGFAKNGY 814

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDIS 567
                  AE  L +  +M+ ++V P D++
Sbjct: 815 -------AEDALRVFDEMKQSHVTPDDVT 836



 Score =  251 bits (640), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 155/481 (32%), Positives = 244/481 (50%), Gaps = 36/481 (7%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F    EL+ VSW +++ GY + G  ++ + +F   ++MEK                
Sbjct: 214 ARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVF---QEMEK---------------- 254

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                           +G   D+    ++++ Y   G  DNA  +F R+ + +VVAW  +
Sbjct: 255 ----------------VGQEPDQVAFVTVINAYVDLGRLDNASDLFSRMPNRNVVAWNLM 298

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   + G   EA + F  MR++ +K  +  L S++ A         G  +HA   K G 
Sbjct: 299 ISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQGL 358

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            S+  VG++LVSMY + G++    +VF+ +  Q+ V WNA+   +      ++ + +F+ 
Sbjct: 359 HSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFN 418

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   GF P+  T+  IL AC+ L  +  G QLH+  IK+    N  VG +LVDMY KSG 
Sbjct: 419 MKSCGFYPDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGA 478

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           LEDA   F+ + N+D  ++  II  Y Q  +   A   FR+M L GI  +E +LAS L+ 
Sbjct: 479 LEDARQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSA 538

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ V  L  G+ +H ++VKTG    ++  ++L+ MYAKCG+ID A  +      R   S 
Sbjct: 539 CASVRGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMPERSVVSM 598

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I GY +  L E+A+  FR ML EG    EITF  +L AC     +  G++  S I K
Sbjct: 599 NALIAGYAQINL-EQAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGRQIHSLILK 657

Query: 484 I 484
           +
Sbjct: 658 M 658



 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 141/506 (27%), Positives = 250/506 (49%), Gaps = 38/506 (7%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+R FK + + ++++WN++L+ +++ G    V+  F  + +     ++F+ + VL  
Sbjct: 110 VDYAERAFKQLEDKDILAWNSILSMHSKQGFPHLVVKYFGLLWNSGVWPNEFTFAIVLSS 169

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    +K G+ VH   +++G     +   +L+ MY+KC    +A  +F    + D V+W
Sbjct: 170 CARLEMVKCGRQVHCNVVKMGFESISYCEGALIGMYAKCNFLTDARSIFDGAVELDKVSW 229

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I    + G  +EA K+F  M +   +P+Q    +++ A                   
Sbjct: 230 TSMIGGYIKVGLPEEAVKVFQEMEKVGQEPDQVAFVTVINA------------------- 270

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
                           Y++ GR+   S +F  + +++ V+WN + S         + +  
Sbjct: 271 ----------------YVDLGRLDNASDLFSRMPNRNVVAWNLMISGHAKGGYGVEAIEF 314

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  M   G K    T   +L A +SL+ + FG  +HA  +K  L  N  VG+SLV MY K
Sbjct: 315 FQNMRKAGIKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAK 374

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +E A   FD+L  +++  + A++  Y Q G A   ++ F  M+  G   ++FT +S 
Sbjct: 375 CGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSI 434

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L+ C+ +  L  G  LHS+ +K     ++FV  ALV MYAK G+++DA   F+    RD 
Sbjct: 435 LSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFELIRNRDN 494

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFS 479
            SWN++I GYV+     +A   FR M   G +PDE++   +LSAC+ +  +E+GK+ H  
Sbjct: 495 VSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGLEQGKQVHCL 554

Query: 480 SIKKIYGITPTIKHFACMIDILGRAG 505
           S+K   G    +   + +ID+  + G
Sbjct: 555 SVKT--GQETKLYSGSSLIDMYAKCG 578



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 118/420 (28%), Positives = 212/420 (50%), Gaps = 35/420 (8%)

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           S +    +++HA +++LG      L   +VD+Y+KC   D A + F +++D D++AW +I
Sbjct: 72  SQFSTTNKIIHAQSLKLGFWSKGVLGNVIVDLYAKCADVDYAERAFKQLEDKDILAWNSI 131

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           ++   +QG      K F L+  S V PN+F    ++ +       +CG  +H  + K GF
Sbjct: 132 LSMHSKQGFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGF 191

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           ES +    AL+ MY +   ++    +F+     D VSW ++   +     P++ +++F +
Sbjct: 192 ESISYCEGALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQE 251

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G +P+   F+ ++ A                                   Y   G 
Sbjct: 252 MEKVGQEPDQVAFVTVINA-----------------------------------YVDLGR 276

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L++A   F  + N+++ A+  +I+ +A+ G    A++ F+ MR  GIKS   TL S L+ 
Sbjct: 277 LDNASDLFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSA 336

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
            + +A L  G L+H+ A+K G   +++V ++LV+MYAKCG ++ A+ VF     ++   W
Sbjct: 337 IASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLW 396

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N M+GGYV++G   + +E F  M   G+ PD+ T+  +LSAC+ +  ++ G +  S I K
Sbjct: 397 NAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQLHSVIIK 456



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 63/111 (56%)

Query: 374 RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKH 433
           +++H+ ++K G      +   +V +YAKC  +D AE  FK    +D  +WN ++  + K 
Sbjct: 79  KIIHAQSLKLGFWSKGVLGNVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMHSKQ 138

Query: 434 GLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
           G     ++ F ++ + G  P+E TF +VLS+C+ + +++ G++   ++ K+
Sbjct: 139 GFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKM 189


>gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 855

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/598 (33%), Positives = 327/598 (54%), Gaps = 2/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++ F +M   NVVSW  +++GY+++G     + ++  M          +  +++K    
Sbjct: 211 ARKAFDTMQLRNVVSWTIMISGYSQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCI 270

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +G I  G+ +H   I+ G         +L+ MY++ G   +A  VF  I   D+++W ++
Sbjct: 271 AGDIDLGRQLHGHVIKSGYDHHLIAQNALISMYTRFGQIVHASDVFTMISTKDLISWASM 330

Query: 124 ITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           IT   Q G   EA  +F ++ R+   +PN+F+  S+  A     +   G  IH +  K+G
Sbjct: 331 ITGFTQLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFSACRSLLEPEFGRQIHGMCAKFG 390

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
              +   G +L  MY + G +    R F  I   D VSWNA+ + F D    ++ +  F 
Sbjct: 391 LGRNVFAGCSLCDMYAKFGFLPSAIRAFYQIESPDLVSWNAIIAAFSDSGDVNEAIYFFC 450

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           QM+  G  P+  TF+ +L AC S   +  G Q+H++ IK  LD    V  SL+ MY K  
Sbjct: 451 QMMHTGLMPDGITFLSLLCACGSPVTINQGTQIHSYIIKIGLDKEAAVCNSLLTMYTKCS 510

Query: 303 CLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
            L DA   F  ++ N +L ++ AI+++  Q  +A    + F+ M     K +  T+ + L
Sbjct: 511 NLHDAFNVFKDVSENANLVSWNAILSACLQHKQAGEVFRLFKLMLFSENKPDNITITTIL 570

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
             C+ +A+L  G  +H  +VK+G ++D+ VS  L+ MYAKCGS+  A  VF  +   D  
Sbjct: 571 GTCAELASLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGSLKHARDVFGSTQNPDIV 630

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SW+ +I GY + GLG +AL  FRMM + G  P+E+T++ VLSACSH+GL+EEG   ++++
Sbjct: 631 SWSSLIVGYAQFGLGHEALNLFRMMKNLGVQPNEVTYLGVLSACSHIGLVEEGWHFYNTM 690

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
           +   GI PT +H +CM+D+L RAG   E ENFI +    P+  +W+ LL +C  HGN+++
Sbjct: 691 EIELGIPPTREHVSCMVDLLARAGCLYEAENFIKKMGFNPDITMWKTLLASCKTHGNVDI 750

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            E+ AE +L+L+P   +  V  S+I A+ G W + + +R L+   G++K P  SWI V
Sbjct: 751 AERAAENILKLDPSNSAALVLLSNIHASVGNWKEVARLRNLMKQMGVQKVPGQSWIAV 808



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 136/467 (29%), Positives = 228/467 (48%), Gaps = 6/467 (1%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +K G+ +H   ++  C  D  L   +++MY KCG   +A K F  ++  +VV+W  +I+ 
Sbjct: 173 LKYGKKIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRNVVSWTIMISG 232

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             Q G   +A  ++  M +S   P+     S+++A    GD   G  +H  + K G++  
Sbjct: 233 YSQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDLGRQLHGHVIKSGYDHH 292

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
            +  NAL+SMY   G++ + S VF  I+ +D +SW ++ + F       + L +F  M  
Sbjct: 293 LIAQNALISMYTRFGQIVHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFR 352

Query: 247 KGF-KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
           +GF +PN   F  +  AC SL +  FG+Q+H    K  L  N   G SL DMY K G L 
Sbjct: 353 QGFYQPNEFIFGSVFSACRSLLEPEFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFLP 412

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
            A  AF  + + DL ++ AII +++ +G+   A+  F +M   G+  +  T  S L  C 
Sbjct: 413 SAIRAFYQIESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCACG 472

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG-SALRDTASWN 424
              T+  G  +HS  +K G   +  V  +L+ MY KC ++ DA  VFK  S   +  SWN
Sbjct: 473 SPVTINQGTQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSWN 532

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKK 483
            ++   ++H    +    F++ML     PD IT   +L  C+ +  +E G + H  S+K 
Sbjct: 533 AILSACLQHKQAGEVFRLFKLMLFSENKPDNITITTILGTCAELASLEVGNQVHCFSVKS 592

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
             G+   +     +ID+  + G      +    T+  P+ + W +L+
Sbjct: 593 --GLVVDVSVSNRLIDMYAKCGSLKHARDVFGSTQ-NPDIVSWSSLI 636



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/405 (28%), Positives = 188/405 (46%), Gaps = 3/405 (0%)

Query: 134 QEAAKIFNLM-RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
           +EA   FN   + SS++       +L+ A T     + G+ IH  I K   + D ++ N 
Sbjct: 138 REALDTFNFHPKNSSIQLESSTYGNLILACTSIRSLKYGKKIHDHILKSNCQPDLVLQNH 197

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           +++MY + G +    + F+ +  ++ VSW  + S +      +  + ++ QML  G+ P+
Sbjct: 198 ILNMYGKCGSLKDARKAFDTMQLRNVVSWTIMISGYSQNGQENDAIIMYIQMLQSGYFPD 257

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
             TF  I+KAC    D+  G+QLH H IK   D + +   +L+ MY + G +  A   F 
Sbjct: 258 PLTFGSIIKACCIAGDIDLGRQLHGHVIKSGYDHHLIAQNALISMYTRFGQIVHASDVFT 317

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI-KSNEFTLASCLNGCSPVATLA 371
            ++ KDL ++ ++IT + Q G    AL  FR M  +G  + NEF   S  + C  +    
Sbjct: 318 MISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFSACRSLLEPE 377

Query: 372 NGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV 431
            GR +H +  K G   ++F   +L  MYAK G +  A   F      D  SWN +I  + 
Sbjct: 378 FGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFYQIESPDLVSWNAIIAAFS 437

Query: 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI 491
             G   +A+  F  M+  G +PD ITF+ +L AC     I +G +  S I KI G+    
Sbjct: 438 DSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCACGSPVTINQGTQIHSYIIKI-GLDKEA 496

Query: 492 KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
                ++ +  +     +  N   +     N + W  +L AC  H
Sbjct: 497 AVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAILSACLQH 541



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 146/293 (49%), Gaps = 17/293 (5%)

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
           T+  ++ AC+S+  + +GK++H H +K +   + V+   +++MY K G L+DA  AFD++
Sbjct: 159 TYGNLILACTSIRSLKYGKKIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTM 218

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
             +++ ++T +I+ Y+Q G+   A+  + +M   G   +  T  S +  C     +  GR
Sbjct: 219 QLRNVVSWTIMISGYSQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDLGR 278

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
            LH   +K+G+   +    AL++MY + G I  A  VF   + +D  SW  MI G+ + G
Sbjct: 279 QLHGHVIKSGYDHHLIAQNALISMYTRFGQIVHASDVFTMISTKDLISWASMITGFTQLG 338

Query: 435 LGEKALEAFRMMLDEG-YVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKH 493
              +AL  FR M  +G Y P+E  F  V SAC  +   E G++      K +G+   +  
Sbjct: 339 YEIEALYLFRDMFRQGFYQPNEFIFGSVFSACRSLLEPEFGRQIHGMCAK-FGLGRNVFA 397

Query: 494 FACMIDILGRAG-------KFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
              + D+  + G        F +IE        +P+ + W  ++ A S  G++
Sbjct: 398 GCSLCDMYAKFGFLPSAIRAFYQIE--------SPDLVSWNAIIAAFSDSGDV 442


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/500 (38%), Positives = 296/500 (59%), Gaps = 4/500 (0%)

Query: 105 ALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTE 164
           A KVF ++ + ++V W  +IT   Q GC ++A  +F  M  S   P++F  +S++ A TE
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 165 TGDQRCGESIHAVICKYGFESDTLVGNALVSMYME---NGRVSYGSRVFEAIAHQDSVSW 221
            G    G+ +H+ + + G   D  VG +LV MY +   +G V    +VFE +   + +SW
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123

Query: 222 NALFSRF-QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTI 280
            A+ + + Q  E   + + +F +M+    +PN  +F  +LKAC +LSD   G+Q++++ +
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 183

Query: 281 KHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALK 340
           K  +   + VG SL+ MY +SG +EDA  AFD L  K+L +Y AI+  YA+  ++E A  
Sbjct: 184 KLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFL 243

Query: 341 CFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYA 400
            F ++   GI  + FT AS L+G + +  +  G  +H   +K G+  +  +  AL++MY+
Sbjct: 244 LFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYS 303

Query: 401 KCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVV 460
           +CG+I+ A  VF     R+  SW  MI G+ KHG   +ALE F  ML+ G  P+EIT+V 
Sbjct: 304 RCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVA 363

Query: 461 VLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLT 520
           VLSACSH+G+I EG+KHF+S+ K +GI P ++H+ACM+D+LGR+G   E   FI    L 
Sbjct: 364 VLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLM 423

Query: 521 PNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVR 580
            +ALVW  LLGAC  HGN EL    AE +LE EP   + Y+  S++ A+ G+W D   +R
Sbjct: 424 ADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIR 483

Query: 581 ALLSSQGIKKEPSCSWIEVD 600
             +  + + KE  CSWIEV+
Sbjct: 484 KSMKERNLIKEAGCSWIEVE 503



 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 140/466 (30%), Positives = 246/466 (52%), Gaps = 8/466 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A +VF  MPE N+V+W  ++  +A+ G  +  + LF  M+       +F+ S+VL     
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKC---GLADNALKVFYRIKDPDVVAW 120
            G +  G+ +H+  IRLG ALD  + CSLVDMY+KC   G  D++ KVF ++ + +V++W
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123

Query: 121 GAIITCLDQQG-CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            AIIT   Q G C +EA ++F  M    ++PN F  +S+++A     D   GE +++   
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 183

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K G  S   VGN+L+SMY  +GR+    + F+ +  ++ VS+NA+   +      ++   
Sbjct: 184 KLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFL 243

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F ++   G   +  TF  +L   +S+  +G G+Q+H   +K     N  +  +L+ MY 
Sbjct: 244 LFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYS 303

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           + G +E A   F+ + ++++ ++T++IT +A+ G A  AL+ F KM   G K NE T  +
Sbjct: 304 RCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVA 363

Query: 360 CLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA-EAVFKGSAL 417
            L+ CS V  ++ G +  +S+  + G +  M     +V +  + G + +A E +     +
Sbjct: 364 VLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLM 423

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
            D   W  ++G    HG  E    A  M+L++   PD+    ++LS
Sbjct: 424 ADALVWRTLLGACRVHGNTELGRHAAEMILEQE--PDDPAAYILLS 467



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 97/166 (58%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A++ F  + E N+VS+NA+++GYA++   ++   LF  + D     S F+ +++L G
Sbjct: 207 MEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSG 266

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+ G +  G+ +H   ++ G   ++ +  +L+ MYS+CG  + A +VF  ++D +V++W
Sbjct: 267 AASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISW 326

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
            ++IT   + G    A ++F+ M E+  KPN+    +++ A +  G
Sbjct: 327 TSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVG 372



 Score = 45.8 bits (107), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 76/167 (45%), Gaps = 7/167 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A +VF  M + NV+SW +++ G+A+ G   + + +F  M +   K ++ +   VL  
Sbjct: 308 IEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSA 367

Query: 61  FANSGYIKAGQV-VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            ++ G I  GQ   ++M    G          +VD+  + GL   A++    +    D +
Sbjct: 368 CSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADAL 427

Query: 119 AWGAIITCLDQQGCCQ---EAAKIFNLMRESSVKPNQFVLTSLVRAT 162
            W  ++      G  +    AA++  ++ +    P  ++L S + A+
Sbjct: 428 VWRTLLGACRVHGNTELGRHAAEM--ILEQEPDDPAAYILLSNLHAS 472


>gi|218186186|gb|EEC68613.1| hypothetical protein OsI_36980 [Oryza sativa Indica Group]
          Length = 981

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/599 (32%), Positives = 339/599 (56%), Gaps = 5/599 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F  M E + +S NA+++ Y+  G   K   +F  M+    +    +L +++   A+
Sbjct: 199 AEKLFDRMEEHDTISRNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCAS 258

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSC--SLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           + +   G  +H++ +R   +LD  ++   +LV+MYS  G   +A  +F+ +   D+++W 
Sbjct: 259 ADHFSHGSGIHSLCLR--SSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWN 316

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            +I+   Q     +A K    +  ++  PN    +S + A +  G    G+ +HA++ + 
Sbjct: 317 TMISSYVQNCNSTDALKTLGQLFHTNEIPNHLTFSSALGACSSPGALIDGKMVHAIVLQL 376

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
             + + LVGN+L++MY +   +    +VF+++   D VS+N L   +   E   + +++F
Sbjct: 377 SLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDVVSYNVLIGGYAVLEDGTKAMQVF 436

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDV-GFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
             +   G KPN  T I I  + +S +D+  +G+ LHA+ I+     +  V  SL+ MY K
Sbjct: 437 SWIRSAGIKPNYITMINIHGSFTSSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAK 496

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G LE +   F+S+ NK++ ++ AII + AQ G  E ALK F  M+  G K +   LA C
Sbjct: 497 CGNLESSTNIFNSITNKNIVSWNAIIAANAQLGHGEEALKLFIDMQHAGNKLDRVCLAEC 556

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L+ C+ +A+L  G  LH + +K+G   D +V  A + MY KCG +++   +    A+R  
Sbjct: 557 LSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMNEMLQMVPDQAIRPQ 616

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
             WN +I GY K+G  ++A E F+ M+  G  PD +TFV +LSACSH GL+++G  +++S
Sbjct: 617 QCWNTLISGYAKYGYFKEAEETFKQMVAMGRKPDYVTFVALLSACSHAGLVDKGIDYYNS 676

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +   +G++P IKH  C++D+LGR G+F E E FI E  + PN L+W +LL +   H N+E
Sbjct: 677 MASSFGVSPGIKHCVCIVDLLGRLGRFAEAERFIEEMPVLPNDLIWRSLLSSSRTHKNLE 736

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +  K A+KLLEL+P  +S YV  S++ AT  RW D   +R+ + +  I K P+CSW+++
Sbjct: 737 IGRKAAKKLLELDPFDDSAYVLLSNLYATNARWVDVDKLRSHMKTININKRPACSWLKL 795



 Score =  238 bits (607), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 156/554 (28%), Positives = 270/554 (48%), Gaps = 5/554 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R+F  MPE NVVSW AL+   + +G  ++ +  +  M+      +  + +TV+    +
Sbjct: 98  ARRLFWEMPERNVVSWTALMVALSSNGYLEETLRAYRQMRREGVPCNANAFATVVSLCGS 157

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G  V +  I  G      ++ SL+ M+   G   +A K+F R+++ D ++  A+
Sbjct: 158 LENEVPGLQVASHVIVSGLQNQVSVANSLITMFGNLGRVQDAEKLFDRMEEHDTISRNAM 217

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+    QG C +   +F+ MR   ++P+   L SL+           G  IH++  +   
Sbjct: 218 ISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASADHFSHGSGIHSLCLRSSL 277

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           +S   V NALV+MY   G++S    +F  ++ +D +SWN + S +    +    L+   Q
Sbjct: 278 DSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQ 337

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           +      PN  TF   L ACSS   +  GK +HA  ++ SL  N +VG SL+ MY K   
Sbjct: 338 LFHTNEIPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNS 397

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +EDA   F S+   D+ +Y  +I  YA   +   A++ F  +R  GIK N  T+ +    
Sbjct: 398 MEDAEKVFQSMPTHDVVSYNVLIGGYAVLEDGTKAMQVFSWIRSAGIKPNYITMINIHGS 457

Query: 364 CSPVATLAN-GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            +    L N GR LH+  ++TG L D +V+ +L+ MYAKCG+++ +  +F     ++  S
Sbjct: 458 FTSSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVS 517

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSI 481
           WN +I    + G GE+AL+ F  M   G   D +     LS+C+ +  +EEG + H   +
Sbjct: 518 WNAIIAANAQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGM 577

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
           K   G+          +D+ G+ GK  E+   + +  + P    W  L+   + +G  + 
Sbjct: 578 KS--GLDSDSYVVNAAMDMYGKCGKMNEMLQMVPDQAIRPQQ-CWNTLISGYAKYGYFKE 634

Query: 542 DEKDAEKLLELEPK 555
            E+  ++++ +  K
Sbjct: 635 AEETFKQMVAMGRK 648



 Score =  211 bits (537), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 117/454 (25%), Positives = 221/454 (48%), Gaps = 3/454 (0%)

Query: 11  MPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY---I 67
           MP+    +W   ++G    G       L   M++     S F+L++++      G    I
Sbjct: 1   MPDRTPSTWYTAVSGCVRCGRDVAAFELLRGMRERGVPLSGFALASLVTACERRGRDEGI 60

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127
             G  +HA+  R G   + ++  +L+ +Y   G+  +A ++F+ + + +VV+W A++  L
Sbjct: 61  ACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDARRLFWEMPERNVVSWTALMVAL 120

Query: 128 DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDT 187
              G  +E  + +  MR   V  N     ++V       ++  G  + + +   G ++  
Sbjct: 121 SSNGYLEETLRAYRQMRREGVPCNANAFATVVSLCGSLENEVPGLQVASHVIVSGLQNQV 180

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK 247
            V N+L++M+   GRV    ++F+ +   D++S NA+ S +       +   +F  M   
Sbjct: 181 SVANSLITMFGNLGRVQDAEKLFDRMEEHDTISRNAMISMYSHQGICSKCFLVFSDMRHH 240

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           G +P+  T   ++  C+S      G  +H+  ++ SLD +  V  +LV+MY  +G L DA
Sbjct: 241 GLRPDATTLCSLMSVCASADHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDA 300

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367
              F +++ +DL ++  +I+SY Q   +  ALK   ++       N  T +S L  CS  
Sbjct: 301 EFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNEIPNHLTFSSALGACSSP 360

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
             L +G+++H+I ++     ++ V  +L+ MY KC S++DAE VF+     D  S+N++I
Sbjct: 361 GALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDVVSYNVLI 420

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVV 461
           GGY     G KA++ F  +   G  P+ IT + +
Sbjct: 421 GGYAVLEDGTKAMQVFSWIRSAGIKPNYITMINI 454



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 108/353 (30%), Positives = 165/353 (46%), Gaps = 8/353 (2%)

Query: 131 GC--CQEAAKIFNL---MRESSVKPNQFVLTSLVRATTETGDQR---CGESIHAVICKYG 182
           GC  C      F L   MRE  V  + F L SLV A    G      CG +IHA+  + G
Sbjct: 15  GCVRCGRDVAAFELLRGMRERGVPLSGFALASLVTACERRGRDEGIACGAAIHALTHRAG 74

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
              +  +G AL+ +Y   G VS   R+F  +  ++ VSW AL          ++ LR + 
Sbjct: 75  LMGNVYIGTALLHLYGSRGIVSDARRLFWEMPERNVVSWTALMVALSSNGYLEETLRAYR 134

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           QM  +G   N   F  ++  C SL +   G Q+ +H I   L     V  SL+ M+   G
Sbjct: 135 QMRREGVPCNANAFATVVSLCGSLENEVPGLQVASHVIVSGLQNQVSVANSLITMFGNLG 194

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            ++DA   FD +   D  +  A+I+ Y+  G        F  MR  G++ +  TL S ++
Sbjct: 195 RVQDAEKLFDRMEEHDTISRNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMS 254

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+     ++G  +HS+ +++     + V  ALV MY+  G + DAE +F   + RD  S
Sbjct: 255 VCASADHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLIS 314

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           WN MI  YV++     AL+    +     +P+ +TF   L ACS  G + +GK
Sbjct: 315 WNTMISSYVQNCNSTDALKTLGQLFHTNEIPNHLTFSSALGACSSPGALIDGK 367



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/265 (31%), Positives = 141/265 (53%), Gaps = 1/265 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A++VF+SMP  +VVS+N L+ GYA   DG K M +F  ++    K +  ++  +   
Sbjct: 398 MEDAEKVFQSMPTHDVVSYNVLIGGYAVLEDGTKAMQVFSWIRSAGIKPNYITMINIHGS 457

Query: 61  FANSGYI-KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           F +S  +   G+ +HA  IR G   D++++ SL+ MY+KCG  +++  +F  I + ++V+
Sbjct: 458 FTSSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVS 517

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W AII    Q G  +EA K+F  M+ +  K ++  L   + +         G  +H +  
Sbjct: 518 WNAIIAANAQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGM 577

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K G +SD+ V NA + MY + G+++   ++    A +    WN L S +  Y    +   
Sbjct: 578 KSGLDSDSYVVNAAMDMYGKCGKMNEMLQMVPDQAIRPQQCWNTLISGYAKYGYFKEAEE 637

Query: 240 IFYQMLLKGFKPNMCTFIVILKACS 264
            F QM+  G KP+  TF+ +L ACS
Sbjct: 638 TFKQMVAMGRKPDYVTFVALLSACS 662



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 111/247 (44%), Gaps = 2/247 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E +  +F S+   N+VSWNA++   A+ G G++ + LF  M+    K  +  L+  L  
Sbjct: 500 LESSTNIFNSITNKNIVSWNAIIAANAQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSS 559

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+   ++ G  +H + ++ G   D ++  + +DMY KCG  +  L++           W
Sbjct: 560 CASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMNEMLQMVPDQAIRPQQCW 619

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG-ESIHAVIC 179
             +I+   + G  +EA + F  M     KP+     +L+ A +  G    G +  +++  
Sbjct: 620 NTLISGYAKYGYFKEAEETFKQMVAMGRKPDYVTFVALLSACSHAGLVDKGIDYYNSMAS 679

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAI-AHQDSVSWNALFSRFQDYESPDQGL 238
            +G          +V +    GR +   R  E +    + + W +L S  + +++ + G 
Sbjct: 680 SFGVSPGIKHCVCIVDLLGRLGRFAEAERFIEEMPVLPNDLIWRSLLSSSRTHKNLEIGR 739

Query: 239 RIFYQML 245
           +   ++L
Sbjct: 740 KAAKKLL 746


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/500 (38%), Positives = 296/500 (59%), Gaps = 4/500 (0%)

Query: 105 ALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTE 164
           A KVF ++ + ++V W  +IT   Q GC ++A  +F  M  S   P++F  +S++ A TE
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 165 TGDQRCGESIHAVICKYGFESDTLVGNALVSMYME---NGRVSYGSRVFEAIAHQDSVSW 221
            G    G+ +H+ + + G   D  VG +LV MY +   +G V    +VFE +   + +SW
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128

Query: 222 NALFSRF-QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTI 280
            A+ + + Q  E   + + +F +M+    +PN  +F  +LKAC +LSD   G+Q++++ +
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 188

Query: 281 KHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALK 340
           K  +   + VG SL+ MY +SG +EDA  AFD L  K+L +Y AI+  YA+  ++E A  
Sbjct: 189 KLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFL 248

Query: 341 CFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYA 400
            F ++   GI  + FT AS L+G + +  +  G  +H   +K G+  +  +  AL++MY+
Sbjct: 249 LFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYS 308

Query: 401 KCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVV 460
           +CG+I+ A  VF     R+  SW  MI G+ KHG   +ALE F  ML+ G  P+EIT+V 
Sbjct: 309 RCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVA 368

Query: 461 VLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLT 520
           VLSACSH+G+I EG+KHF+S+ K +GI P ++H+ACM+D+LGR+G   E   FI    L 
Sbjct: 369 VLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLM 428

Query: 521 PNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVR 580
            +ALVW  LLGAC  HGN EL    AE +LE EP   + Y+  S++ A+ G+W D   +R
Sbjct: 429 ADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIR 488

Query: 581 ALLSSQGIKKEPSCSWIEVD 600
             +  + + KE  CSWIEV+
Sbjct: 489 KSMKERNLIKEAGCSWIEVE 508



 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 140/466 (30%), Positives = 246/466 (52%), Gaps = 8/466 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A +VF  MPE N+V+W  ++  +A+ G  +  + LF  M+       +F+ S+VL     
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKC---GLADNALKVFYRIKDPDVVAW 120
            G +  G+ +H+  IRLG ALD  + CSLVDMY+KC   G  D++ KVF ++ + +V++W
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128

Query: 121 GAIITCLDQQG-CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            AIIT   Q G C +EA ++F  M    ++PN F  +S+++A     D   GE +++   
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 188

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K G  S   VGN+L+SMY  +GR+    + F+ +  ++ VS+NA+   +      ++   
Sbjct: 189 KLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFL 248

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F ++   G   +  TF  +L   +S+  +G G+Q+H   +K     N  +  +L+ MY 
Sbjct: 249 LFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYS 308

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           + G +E A   F+ + ++++ ++T++IT +A+ G A  AL+ F KM   G K NE T  +
Sbjct: 309 RCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVA 368

Query: 360 CLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA-EAVFKGSAL 417
            L+ CS V  ++ G +  +S+  + G +  M     +V +  + G + +A E +     +
Sbjct: 369 VLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLM 428

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
            D   W  ++G    HG  E    A  M+L++   PD+    ++LS
Sbjct: 429 ADALVWRTLLGACRVHGNTELGRHAAEMILEQE--PDDPAAYILLS 472



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 97/166 (58%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A++ F  + E N+VS+NA+++GYA++   ++   LF  + D     S F+ +++L G
Sbjct: 212 MEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSG 271

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+ G +  G+ +H   ++ G   ++ +  +L+ MYS+CG  + A +VF  ++D +V++W
Sbjct: 272 AASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISW 331

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
            ++IT   + G    A ++F+ M E+  KPN+    +++ A +  G
Sbjct: 332 TSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVG 377



 Score = 45.8 bits (107), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 76/167 (45%), Gaps = 7/167 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A +VF  M + NV+SW +++ G+A+ G   + + +F  M +   K ++ +   VL  
Sbjct: 313 IEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSA 372

Query: 61  FANSGYIKAGQV-VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            ++ G I  GQ   ++M    G          +VD+  + GL   A++    +    D +
Sbjct: 373 CSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADAL 432

Query: 119 AWGAIITCLDQQGCCQ---EAAKIFNLMRESSVKPNQFVLTSLVRAT 162
            W  ++      G  +    AA++  ++ +    P  ++L S + A+
Sbjct: 433 VWRTLLGACRVHGNTELGRHAAEM--ILEQEPDDPAAYILLSNLHAS 477


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/602 (35%), Positives = 324/602 (53%), Gaps = 6/602 (0%)

Query: 4   AKRVFKSM----PELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           A+R+F        E N VSWN +++ Y ++      + +F  M    ++ ++F  S V+ 
Sbjct: 154 ARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVN 213

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
               S  ++AG+ VH   +R G   D F + +LVDMYSK G  + A  VF ++   DVV+
Sbjct: 214 ACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVS 273

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W A I+     G    A ++   M+ S + PN F L+S+++A    G    G  IH  + 
Sbjct: 274 WNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMV 333

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K   + D  V   LV MY ++G +    +VF+ +  +D + WNAL S         + L 
Sbjct: 334 KAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLS 393

Query: 240 IFYQMLLKGFK--PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           +F++M  +G     N  T   +LK+ +S   +   +Q+HA   K  L  +  V   L+D 
Sbjct: 394 LFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDS 453

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K G L+ A   F    + D+ + T ++T+ +Q    E A+K F +M  +G++ + F L
Sbjct: 454 YWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVL 513

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           +S LN C+ ++    G+ +H+  +K     D+F   ALV  YAKCGSI+DA+  F G   
Sbjct: 514 SSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPE 573

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           R   SW+ MIGG  +HG G++AL+ F  MLDEG  P+ IT   VLSAC+H GL+++ KK+
Sbjct: 574 RGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKY 633

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F S+K+ +GI  T +H+ACMIDILGRAGK  +    +       NA VW  LLGA   H 
Sbjct: 634 FESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHR 693

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           + EL    AEKL  LEP+    +V  ++  A+ G W++ + VR L+    +KKEP+ SW+
Sbjct: 694 DPELGRMAAEKLFTLEPEKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKEPAMSWV 753

Query: 598 EV 599
           E+
Sbjct: 754 EI 755



 Score =  248 bits (633), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 168/574 (29%), Positives = 275/574 (47%), Gaps = 22/574 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF  +P+   VSW++L+  Y+ +G  +  +  F +M+      ++F+L  VLK   +
Sbjct: 56  ARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCAPD 115

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI----KDPDVVA 119
              ++ G  VHA+A+      D F++ +LV +Y   G+ D A ++F        + + V+
Sbjct: 116 ---VRFGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVS 172

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  +I+   +     +A  +F  M  S  +PN+F  + +V A T + D   G  +H  + 
Sbjct: 173 WNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVV 232

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           + G+E D    NALV MY + G +   + VFE +   D VSWNA  S    +    + L 
Sbjct: 233 RTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALE 292

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +  QM   G  PN+ T   +LKAC+       G+Q+H   +K   D +  V   LVDMY 
Sbjct: 293 LLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYA 352

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG--IKSNEFTL 357
           K G L+DA   FD +  +DL  + A+I+  +  G     L  F +MR EG  +  N  TL
Sbjct: 353 KHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTL 412

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           AS L   +    + + R +H++A K G L D  V   L+  Y KCG +D A  VFK S  
Sbjct: 413 ASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRS 472

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK- 476
            D  S   M+    +   GE A++ F  ML +G  PD      +L+AC+ +   E+GK+ 
Sbjct: 473 DDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQV 532

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV-WENLLGACSW 535
           H   IK+ +  T  +     ++    + G   + +  +  + L    +V W  ++G  + 
Sbjct: 533 HAHLIKRQF--TSDVFAGNALVYAYAKCGSIEDAD--MAFSGLPERGIVSWSAMIGGLAQ 588

Query: 536 HGNIELDEKDAEKLLELEPKMESNYVFPSDISAT 569
           HG+        ++ L+L  +M    V P+ I+ T
Sbjct: 589 HGH-------GKRALDLFHRMLDEGVAPNHITLT 615



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 120/367 (32%), Positives = 193/367 (52%), Gaps = 2/367 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E+A  VF+ MP  +VVSWNA ++G    G   + + L   MK      + F+LS+VLK 
Sbjct: 256 IEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKA 315

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A +G    G+ +H   ++     D+F++  LVDMY+K G  D+A KVF  +   D++ W
Sbjct: 316 CAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILW 375

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRES--SVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            A+I+     G   E   +F+ MR+    +  N+  L S++++T  +        +HA+ 
Sbjct: 376 NALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALA 435

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K G  SD+ V N L+  Y + G++ Y  +VF+     D +S   + +     +  +  +
Sbjct: 436 EKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAI 495

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           ++F QML KG +P+      +L AC+SLS    GKQ+HAH IK     +   G +LV  Y
Sbjct: 496 KLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAY 555

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G +EDA +AF  L  + + +++A+I   AQ G  + AL  F +M  EG+  N  TL 
Sbjct: 556 AKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLT 615

Query: 359 SCLNGCS 365
           S L+ C+
Sbjct: 616 SVLSACN 622



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 122/402 (30%), Positives = 189/402 (47%), Gaps = 9/402 (2%)

Query: 53  SLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI 112
           ++ + L  F  S  + AG  +H+  ++ G  L    S  L+ +YS+C L   A  VF  I
Sbjct: 6   TIGSALARFGTSRSLFAGAHLHSHLLKSG--LLAGFSNHLLTLYSRCRLPSAARAVFDEI 63

Query: 113 KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172
            DP  V+W +++T     G  ++A   F  MR   V  N+F L  +++      D R G 
Sbjct: 64  PDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCAP---DVRFGA 120

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAI----AHQDSVSWNALFSRF 228
            +HA+        D  V NALV++Y   G V    R+F+        +++VSWN + S +
Sbjct: 121 QVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAY 180

Query: 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH 288
              +     + +F +M+  G +PN   F  ++ AC+   D+  G+Q+H   ++   + + 
Sbjct: 181 VKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDV 240

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
               +LVDMY K G +E A   F+ +   D+ ++ A I+     G    AL+   +M+  
Sbjct: 241 FTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSS 300

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
           G+  N FTL+S L  C+       GR +H   VK     D FV+  LV MYAK G +DDA
Sbjct: 301 GLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDA 360

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
             VF     RD   WN +I G    G   + L  F  M  EG
Sbjct: 361 RKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEG 402


>gi|449502685|ref|XP_004161713.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g47840-like [Cucumis
           sativus]
          Length = 712

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/597 (33%), Positives = 322/597 (53%), Gaps = 1/597 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMK-DMEKKFSKFSLSTVLKGFA 62
           A+ +F  +P+ + VSW  +++GY  S D  + + LF  M+   E +   F LS  LK   
Sbjct: 68  ARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLSLGLKTCG 127

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
                  G  +H  +++ G     F+  +L+DMY K G    + KVF  +   + V W A
Sbjct: 128 LGLNYLYGTNLHGFSVKXGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTA 187

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +IT L + G  +     F+ M  S V+ + +     ++A+ ++G    G SIH    K G
Sbjct: 188 VITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKG 247

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F+ ++ V N+L +MY + G++ YG   F  +   D VSW  + + +      D GL+ F 
Sbjct: 248 FDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFK 307

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M      PN  TF  ++  C++ + + +G+QLHAH +         V  S++ +Y K G
Sbjct: 308 RMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCG 367

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            L      F S+  +D+  ++ II +Y+Q G  E A +   +MR EG K NEF LAS L+
Sbjct: 368 ELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLS 427

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C  +A L  G+ LH+  +  G      V +AL+ MYAKCGSI +A  +F  S   D  S
Sbjct: 428 VCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIIS 487

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           W  MI GY +HG  ++A+E F  +   G  PD +TF+ VL+ACSH G+++ G  +F+S+ 
Sbjct: 488 WTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMS 547

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           K Y ITP+ +H+ CMID+L RAG+  + E  I    +  + +VW  LL AC  HG+++  
Sbjct: 548 KDYHITPSKEHYGCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCG 607

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           ++ A ++L+L+P     ++  ++I A +G+W + + +R L+ S+G+ KEP  S ++V
Sbjct: 608 QRAAAEVLKLDPNCAGTHITLANIFAAKGKWKEAANIRMLMKSKGVVKEPGWSSVKV 664



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 137/273 (50%), Gaps = 2/273 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++     F+ M  L+VVSW  ++  Y + G     +  F  M+      ++++ S V+  
Sbjct: 268 LDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISC 327

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            AN   +K G+ +HA  + +G      ++ S++ +YSKCG   +  KVF  +K  D++ W
Sbjct: 328 CANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITW 387

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             II    Q G  +EA +  + MR    KPN+F L S++           G+ +HA +  
Sbjct: 388 STIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLS 447

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G E  ++V +AL+ MY + G ++  S++F      D +SW A+ S + ++    + + +
Sbjct: 448 VGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIEL 507

Query: 241 FYQMLLKGFKPNMCTFIVILKACS--SLSDVGF 271
           F  +   G +P+  TFI +L ACS   + D+GF
Sbjct: 508 FENIQKVGLRPDSVTFIGVLTACSHAGMVDLGF 540



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 90/186 (48%), Gaps = 2/186 (1%)

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG-IKSNEFTLA 358
           K+  L+DA   FD L  +D  ++T II+ Y  + ++  AL+ F KMRL+  ++ + F L+
Sbjct: 61  KTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLS 120

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
             L  C        G  LH  +VK G +  +FV +AL+ MY K G I  +  VF     R
Sbjct: 121 LGLKTCGLGLNYLYGTNLHGFSVKXGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTR 180

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-H 477
           +  +W  +I G V+ G  E  L  F  M       D   + + L A +  G +  G+  H
Sbjct: 181 NAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIH 240

Query: 478 FSSIKK 483
             ++KK
Sbjct: 241 TQTLKK 246


>gi|449449950|ref|XP_004142727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Cucumis sativus]
          Length = 712

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/597 (33%), Positives = 322/597 (53%), Gaps = 1/597 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMK-DMEKKFSKFSLSTVLKGFA 62
           A+ +F  +P+ + VSW  +++GY  S D  + + LF  M+   E +   F LS  LK   
Sbjct: 68  ARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLSLGLKTCG 127

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
                  G  +H  +++ G     F+  +L+DMY K G    + KVF  +   + V W A
Sbjct: 128 LGLNYLYGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTA 187

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +IT L + G  +     F+ M  S V+ + +     ++A+ ++G    G SIH    K G
Sbjct: 188 VITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKG 247

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F+ ++ V N+L +MY + G++ YG   F  +   D VSW  + + +      D GL+ F 
Sbjct: 248 FDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFK 307

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M      PN  TF  ++  C++ + + +G+QLHAH +         V  S++ +Y K G
Sbjct: 308 RMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCG 367

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            L      F S+  +D+  ++ II +Y+Q G  E A +   +MR EG K NEF LAS L+
Sbjct: 368 ELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLS 427

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C  +A L  G+ LH+  +  G      V +AL+ MYAKCGSI +A  +F  S   D  S
Sbjct: 428 VCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIIS 487

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           W  MI GY +HG  ++A+E F  +   G  PD +TF+ VL+ACSH G+++ G  +F+S+ 
Sbjct: 488 WTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMS 547

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           K Y ITP+ +H+ CMID+L RAG+  + E  I    +  + +VW  LL AC  HG+++  
Sbjct: 548 KDYHITPSKEHYGCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCG 607

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           ++ A ++L+L+P     ++  ++I A +G+W + + +R L+ S+G+ KEP  S ++V
Sbjct: 608 QRAAAEVLKLDPNCAGTHITLANIFAAKGKWKEAANIRMLMKSKGVVKEPGWSSVKV 664



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 137/273 (50%), Gaps = 2/273 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++     F+ M  L+VVSW  ++  Y + G     +  F  M+      ++++ S V+  
Sbjct: 268 LDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISC 327

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            AN   +K G+ +HA  + +G      ++ S++ +YSKCG   +  KVF  +K  D++ W
Sbjct: 328 CANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITW 387

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             II    Q G  +EA +  + MR    KPN+F L S++           G+ +HA +  
Sbjct: 388 STIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLS 447

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G E  ++V +AL+ MY + G ++  S++F      D +SW A+ S + ++    + + +
Sbjct: 448 VGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIEL 507

Query: 241 FYQMLLKGFKPNMCTFIVILKACS--SLSDVGF 271
           F  +   G +P+  TFI +L ACS   + D+GF
Sbjct: 508 FENIQKVGLRPDSVTFIGVLTACSHAGMVDLGF 540



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 2/186 (1%)

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG-IKSNEFTLA 358
           K+  L+DA   FD L  +D  ++T II+ Y  + ++  AL+ F KMRL+  ++ + F L+
Sbjct: 61  KTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLS 120

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
             L  C        G  LH  +VKTG +  +FV +AL+ MY K G I  +  VF     R
Sbjct: 121 LGLKTCGLGLNYLYGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTR 180

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-H 477
           +  +W  +I G V+ G  E  L  F  M       D   + + L A +  G +  G+  H
Sbjct: 181 NAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIH 240

Query: 478 FSSIKK 483
             ++KK
Sbjct: 241 TQTLKK 246


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/597 (32%), Positives = 329/597 (55%), Gaps = 28/597 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F  M + + VS+N+L++G A+ G   + + LF  M    +K    +++++L   A+
Sbjct: 305 AEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACAS 364

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G +  G+  H+ AI+ G   D  +  SL+D+Y KC                D+      
Sbjct: 365 VGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCS---------------DIKTAHEF 409

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
             C  Q     ++ +IF  M+   + PNQF   S+++  T  G    GE IH  + K GF
Sbjct: 410 FLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGF 469

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           + +  V + L+ MY ++G++ +  ++F  +   D VSW A+ + +  ++   + L +F +
Sbjct: 470 QFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKE 529

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +G K +   F   + AC+ +  +  G+Q+HA +       +  +G +LV +Y + G 
Sbjct: 530 MQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGK 589

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           + +A  AFD +  KD  ++ ++++ +AQ+G  E AL  F +M   G++ N FT  S ++ 
Sbjct: 590 VREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSA 649

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
            + +A +  G+ +H +  KTG+  +  VS AL+ +YAKCG+IDD              SW
Sbjct: 650 AANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDDI-------------SW 696

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N MI GY +HG G +AL+ F  M     +P+ +TFV VLSACSH+GL++EG  +F S+ +
Sbjct: 697 NSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSE 756

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            + + P  +H+AC++D+LGR+G  +  + F+ E  + P+A+VW  LL AC+ H NI++ E
Sbjct: 757 AHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGE 816

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
             A  LLELEPK  + YV  S++ A  G+W+     R ++  +G+KKEP  SW+EVD
Sbjct: 817 FAASHLLELEPKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVD 873



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 143/534 (26%), Positives = 258/534 (48%), Gaps = 44/534 (8%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AK+VF+++   + VSW A+++G +++G  ++ M LFC +              VL     
Sbjct: 218 AKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTK 263

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
             + + G+ +H + ++ G + + ++  +LV +YS+ G   +A ++F+ +   D V++ ++
Sbjct: 264 VEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSL 323

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+ L QQG    A  +F  M     KP+   + SL+ A    G    G+  H+   K G 
Sbjct: 324 ISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGM 383

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            SD +V  +L+ +Y++   +      F      D++               ++  +IF Q
Sbjct: 384 TSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNL---------------NKSFQIFTQ 428

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M ++G  PN  T+  ILK C++L     G+Q+H   +K     N  V + L+DMY K G 
Sbjct: 429 MQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGK 488

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L+ A   F  L   D+ ++TA+I  Y Q  +   AL  F++M+ +GIKS+    AS ++ 
Sbjct: 489 LDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISA 548

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +  L  GR +H+ +  +G+  D+ +  ALV++YA+CG + +A A F     +D  SW
Sbjct: 549 CAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSW 608

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N ++ G+ + G  E+AL  F  M   G   +  TF   +SA +++  +  GK+    I+K
Sbjct: 609 NSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRK 668

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
             G     +    +I +  + G   +I               W +++   S HG
Sbjct: 669 T-GYDSETEVSNALITLYAKCGTIDDIS--------------WNSMITGYSQHG 707



 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 159/542 (29%), Positives = 260/542 (47%), Gaps = 34/542 (6%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A  VF  MP  ++  WN + N +       +V  LF  M     +F +   + VL+G
Sbjct: 113 LNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLRG 172

Query: 61  FA-NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
            + N+   +  + +HA  I  G     F+   L+D+Y K G   +A KVF  +K  D V+
Sbjct: 173 CSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVS 232

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W A+I+ L Q G  +EA  +F           Q VL+    A T+      G+ +H ++ 
Sbjct: 233 WVAMISGLSQNGYEEEAMLLF----------CQIVLS----ACTKVEFFEFGKQLHGLVL 278

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K GF S+T V NALV++Y  +G +S   ++F  ++ +D VS+N+L S        ++ L 
Sbjct: 279 KQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALA 338

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F +M L   KP+  T   +L AC+S+  +  GKQ H++ IK  +  + VV  SL+D+Y 
Sbjct: 339 LFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYV 398

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K   ++ A   F                 Y Q      + + F +M++EGI  N+FT  S
Sbjct: 399 KCSDIKTAHEFF---------------LCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPS 443

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L  C+ +     G  +H+  +KTG   +++VS+ L+ MYAK G +D A  +F+     D
Sbjct: 444 ILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKEND 503

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HF 478
             SW  MI GY +H    +AL  F+ M D+G   D I F   +SAC+ +  +++G++ H 
Sbjct: 504 VVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHA 563

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            S    Y    +I +   ++ +  R GK  E      +     N + W +L+   +  G 
Sbjct: 564 QSCLSGYSDDLSIGN--ALVSLYARCGKVREAYAAFDQIYAKDN-VSWNSLVSGFAQSGY 620

Query: 539 IE 540
            E
Sbjct: 621 FE 622



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 128/482 (26%), Positives = 212/482 (43%), Gaps = 35/482 (7%)

Query: 92  LVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPN 151
           L+D Y   G  + A+ VF  +    +  W  I      +        +F  M   +V+ +
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFD 162

Query: 152 QFVLTSLVRATTETGDQ-RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF 210
           + +   ++R  +      R  E IHA     GFES T + N L+ +Y +NG +S   +VF
Sbjct: 163 ERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVF 222

Query: 211 EAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVG 270
           E +  +DSVSW A+ S        ++ + +F Q              ++L AC+ +    
Sbjct: 223 ENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQ--------------IVLSACTKVEFFE 268

Query: 271 FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
           FGKQLH   +K        V  +LV +Y +SG L  A   F  ++ +D  +Y ++I+  A
Sbjct: 269 FGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLA 328

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
           Q G    AL  F+KM L+  K +  T+AS L+ C+ V  L NG+  HS A+K G   D+ 
Sbjct: 329 QQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIV 388

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
           V  +L+ +Y KC  I  A   F      D  +               K+ + F  M  EG
Sbjct: 389 VEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLN---------------KSFQIFTQMQIEG 433

Query: 451 YVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEI 510
            VP++ T+  +L  C+ +G  + G++  + + K  G    +   + +ID+  + GK    
Sbjct: 434 IVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKT-GFQFNVYVSSVLIDMYAKHGKLDHA 492

Query: 511 ENFITETKLTPNALV-WENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISAT 569
                  +L  N +V W  ++   + H     +  +  K ++ +     N  F S ISA 
Sbjct: 493 LKIF--RRLKENDVVSWTAMIAGYTQHDKFT-EALNLFKEMQDQGIKSDNIGFASAISAC 549

Query: 570 QG 571
            G
Sbjct: 550 AG 551



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 151/308 (49%), Gaps = 14/308 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A ++F+ + E +VVSW A++ GY +     + ++LF  M+D   K      ++ +  
Sbjct: 489 LDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISA 548

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    +  G+ +HA +   G + D  +  +LV +Y++CG    A   F +I   D V+W
Sbjct: 549 CAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSW 608

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++++   Q G  +EA  IF  M ++ ++ N F   S V A     + R G+ IH +I K
Sbjct: 609 NSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRK 668

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G++S+T V NAL+++Y + G +             D +SWN++ + +  +    + L++
Sbjct: 669 TGYDSETEVSNALITLYAKCGTI-------------DDISWNSMITGYSQHGCGFEALKL 715

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFG-KQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           F  M      PN  TF+ +L ACS +  V  G     + +  H+L         +VD+  
Sbjct: 716 FEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLLG 775

Query: 300 KSGCLEDA 307
           +SG L  A
Sbjct: 776 RSGLLSRA 783



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 177/383 (46%), Gaps = 37/383 (9%)

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
           G  L+  Y+  G ++    VF+ +  +    WN +F+ F       +   +F +ML K  
Sbjct: 100 GLKLIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNV 159

Query: 250 KPNMCTFIVILKACS-SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
           + +   F V+L+ CS +     F +Q+HA TI    + +  +   L+D+Y K+G L  A 
Sbjct: 160 EFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAK 219

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
             F++L  +D  ++ A+I+  +Q G  E A+  F ++               L+ C+ V 
Sbjct: 220 KVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKVE 265

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
               G+ LH + +K G   + +V  ALV +Y++ G++  AE +F   + RD  S+N +I 
Sbjct: 266 FFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLIS 325

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGI 487
           G  + G   +AL  F+ M  +   PD +T   +LSAC+ +G +  GK+ H  +IK   G+
Sbjct: 326 GLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKA--GM 383

Query: 488 TPTIKHFACMIDILGRAGKFTEIENF----------------ITETK---LTPNALVWEN 528
           T  I     ++D+  +         F                 T+ +   + PN   + +
Sbjct: 384 TSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPS 443

Query: 529 LLGACSWHGNIELDEKDAEKLLE 551
           +L  C+  G  +L E+   ++L+
Sbjct: 444 ILKTCTTLGATDLGEQIHTQVLK 466


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/631 (33%), Positives = 332/631 (52%), Gaps = 34/631 (5%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKD------------------M 45
           A +V+  MP  N VS N +++GY + GD     HLF +M D                   
Sbjct: 63  ALKVYDEMPHKNTVSTNTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHF 122

Query: 46  EKKFSKF-------------SLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSL 92
           ++ F  F             + +T+L G  ++    A   VHA A++LG   + FL+   
Sbjct: 123 DEAFKLFRQMCRSCTLPDYVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCN 182

Query: 93  VDMYSKCGLA--DNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKP 150
           V + S C +   D A  +F  I D D V +  +IT  ++ G   EA  +F  MR+S  KP
Sbjct: 183 VLLKSYCEVRRLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKP 242

Query: 151 NQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF 210
           + F  + +++A     D   G+ +H +    GF  D  VGN ++  Y ++ RV     +F
Sbjct: 243 SDFTFSGVLKAVVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLF 302

Query: 211 EAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVG 270
             +   D VS+N + S +   E  ++ L +F +M   GF      F  +L   ++LS + 
Sbjct: 303 NEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQ 362

Query: 271 FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
            G+Q+H   I  + D    VG SLVDMY K    ++A + F SL+ +   ++TA+I+ Y 
Sbjct: 363 VGRQVHCQAIVATADSILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYV 422

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
           Q G     LK F KMR   +++++ T A+ L   +  A+L  G+ LH+  +++G+L ++F
Sbjct: 423 QKGLHGAGLKLFTKMRGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLENVF 482

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
             + LV MYAKCGSI DA  VF+    R+  SWN +I  Y  +G GE A+ AF  M+  G
Sbjct: 483 SGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQSG 542

Query: 451 YVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEI 510
             PD ++ + VL ACSH G +E+G + F ++  IYGITP  KH+ACM+D+LGR G+F E 
Sbjct: 543 LQPDSVSILGVLIACSHCGFVEQGTEFFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEA 602

Query: 511 ENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEP-KMESNYVFPSDISAT 569
           E  + E    P+ ++W ++L AC  + N  L E+ AE+L  +E  +  + YV  S+I A 
Sbjct: 603 EKLMDEMPFEPDEIMWSSVLNACRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMSNIYAA 662

Query: 570 QGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
            G+W +   V+  +  +GIKK P+ SW+EV+
Sbjct: 663 AGKWENVRHVKKAMRERGIKKVPAYSWVEVN 693



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 134/492 (27%), Positives = 224/492 (45%), Gaps = 5/492 (1%)

Query: 52  FSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSC-SLVDMYSKCGLADNALKVFY 110
           F+  T    F     ++ GQV  A+ +         +S  +++  Y K G   +A  +F 
Sbjct: 40  FNTDTCRSNFTVEDLLRRGQVSAALKVYDEMPHKNTVSTNTMISGYVKMGDLSSARHLFD 99

Query: 111 RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC 170
            + D  VV W  ++          EA K+F  M  S   P+    T+L+    +   Q  
Sbjct: 100 AMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRSCTLPDYVTFTTLLPGCNDAVPQNA 159

Query: 171 GESIHAVICKYGFESDTL--VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228
              +HA   K GF+++    V N L+  Y E  R+     +FE I  +DSV++N L + +
Sbjct: 160 VGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEILDKDSVTFNTLITGY 219

Query: 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH 288
           +      + + +F +M   G KP+  TF  +LKA   L D   G+QLH  ++      + 
Sbjct: 220 EKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGLHDFALGQQLHGLSVTTGFSRDA 279

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
            VG  ++  Y K   + +    F+ +   D  +Y  +I+SY+QA + E +L  FR+M+  
Sbjct: 280 SVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCM 339

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
           G     F  A+ L+  + +++L  GR +H  A+       + V  +LV MYAKC   D+A
Sbjct: 340 GFDRRNFPFATMLSIAANLSSLQVGRQVHCQAIVATADSILHVGNSLVDMYAKCEMFDEA 399

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
           E +FK  + R T SW  +I GYV+ GL    L+ F  M       D+ TF  VL A +  
Sbjct: 400 ELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMRGANLRADQSTFATVLKASAGF 459

Query: 469 GLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWEN 528
             +  GK+  + I +  G    +   + ++D+  + G   +      E     NA+ W  
Sbjct: 460 ASLLLGKQLHAFIIR-SGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMP-DRNAVSWNA 517

Query: 529 LLGACSWHGNIE 540
           L+ A + +G+ E
Sbjct: 518 LISAYADNGDGE 529



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 121/520 (23%), Positives = 226/520 (43%), Gaps = 50/520 (9%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++LA  +F+ + + + V++N L+ GY + G   + +HLF  M+    K S F+ S VLK 
Sbjct: 194 LDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKA 253

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                    GQ +H +++  G + D  +   ++  YSK         +F  + + D V++
Sbjct: 254 VVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSY 313

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+   Q    +E+  +F  M+        F   +++         + G  +H     
Sbjct: 314 NVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQAIV 373

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              +S   VGN+LV MY +         +F++++ + +VSW AL S +        GL++
Sbjct: 374 ATADSILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKL 433

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M     + +  TF  +LKA +  + +  GKQLHA  I+     N   G+ LVDMY K
Sbjct: 434 FTKMRGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAK 493

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G ++DA   F+ + +++  ++ A+I++YA  G+ E A+  F KM   G++ +  ++   
Sbjct: 494 CGSIKDAVQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQSGLQPDSVSILGV 553

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA---- 416
           L  CS                                    CG ++     F+  +    
Sbjct: 554 LIACS-----------------------------------HCGFVEQGTEFFQAMSPIYG 578

Query: 417 -LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC---SHMGLIE 472
                  +  M+    ++G   +  EA ++M +  + PDEI +  VL+AC    +  L E
Sbjct: 579 ITPKKKHYACMLDLLGRNG---RFAEAEKLMDEMPFEPDEIMWSSVLNACRIYKNQSLAE 635

Query: 473 EGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIEN 512
              +   S++K+         +  M +I   AGK+  + +
Sbjct: 636 RAAEQLFSMEKLRDAAA----YVSMSNIYAAAGKWENVRH 671


>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/603 (32%), Positives = 327/603 (54%), Gaps = 4/603 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+ VF ++PE + V+W  +++G  + G     + LF  + +       + LSTVL  
Sbjct: 199 IDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLSA 258

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +   +++ G+ +HA  +R G   D  L   L+D Y KCG    A K+F  + + ++++W
Sbjct: 259 CSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNIISW 318

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +++   Q    +EA ++F  M +  +KP+ F  +S++ +         G  +HA   K
Sbjct: 319 TTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQVHAYTIK 378

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNAL---FSRFQDYESPDQG 237
               +D+ V N+L+ MY +   ++   +VF+  A  D V +NA+   +SR          
Sbjct: 379 ANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSRLGTQWELHDA 438

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           L IF+ M  +  +P++ TF+ +L+A +SL+ +G  KQ+H    K  L+ +   G++L+ +
Sbjct: 439 LNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKFGLNLDIFAGSALIAV 498

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y    CL+D+ + FD +  KDL  + ++ + Y Q  E E AL  F +++L   + +EFT 
Sbjct: 499 YSNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENEEALNLFLELQLSRDRPDEFTF 558

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
              +     +A+L  G+  H   +K G   + +++ AL+ MYAKCGS +DA   F  +A 
Sbjct: 559 VDMVTAAGNLASLQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAAS 618

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           RD   WN +I  Y  HG G KAL+    M+ EG  P+ ITFV VLSACSH GL+E+G K 
Sbjct: 619 RDVVCWNSVISSYANHGEGRKALQMLEKMMCEGIEPNYITFVGVLSACSHAGLVEDGLKQ 678

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F  + + +GI P  +H+ CM+ +LGRAG+  E    I +    P A+VW +LL  C+  G
Sbjct: 679 FELMLR-FGIEPETEHYVCMVSLLGRAGRLNEARELIEKMPTKPAAIVWRSLLSGCAKAG 737

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           N+EL E  AE  +  +PK   ++   S+I A++G W D   VR  +  +G+ KEP  SWI
Sbjct: 738 NVELAEYAAEMAILSDPKDSGSFTLLSNIYASKGMWTDAKKVRERMKFEGVVKEPGRSWI 797

Query: 598 EVD 600
           E++
Sbjct: 798 EIN 800



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 157/574 (27%), Positives = 288/574 (50%), Gaps = 24/574 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLK 59
           M  A++VF+ MPE N+V+W+ +++     G  ++ + +F    +  +   +++ LS+ ++
Sbjct: 95  MVYARKVFEKMPERNLVTWSTMVSACNHHGFYEESLVVFLDFWRTRKNSPNEYILSSFIQ 154

Query: 60  ---GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD 116
              G   SG     Q+  +  ++     D ++   L+D Y K G  D A  VF  + +  
Sbjct: 155 ACSGLDGSGRWMVFQL-QSFLVKSRFDRDVYVGTLLIDFYLKEGNIDYARLVFDALPEKS 213

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
            V W  +I+   + G    + ++F  + E +V P+ ++L++++ A +       G+ IHA
Sbjct: 214 TVTWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLSACSILPFLEGGKQIHA 273

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
            I +YG E D  + N L+  Y++ GRV    ++F+ + +++ +SW  L S ++      +
Sbjct: 274 HILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKE 333

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            + +F  M   G KP+M     IL +C+SL  + FG Q+HA+TIK +L  +  V  SL+D
Sbjct: 334 AMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQVHAYTIKANLGNDSYVTNSLID 393

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG---EAEMALKCFRKMRLEGIKSN 353
           MY K  CL +A   FD  A  D+  + A+I  Y++ G   E   AL  F  MR   I+ +
Sbjct: 394 MYAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPS 453

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
             T  S L   + + +L   + +H +  K G  LD+F  +AL+A+Y+ C  + D+  VF 
Sbjct: 454 LLTFVSLLRASASLTSLGLSKQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFD 513

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
              ++D   WN M  GYV+    E+AL  F  +      PDE TFV +++A  ++  ++ 
Sbjct: 514 EMKVKDLVIWNSMFSGYVQQSENEEALNLFLELQLSRDRPDEFTFVDMVTAAGNLASLQL 573

Query: 474 GKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
           G++ H   +K+     P I +   ++D+  + G   E  +   ++  + + + W +++ +
Sbjct: 574 GQEFHCQLLKRGLECNPYITN--ALLDMYAKCGS-PEDAHKAFDSAASRDVVCWNSVISS 630

Query: 533 CSWHGNIELDEKDAEKLLELEPKM-----ESNYV 561
            + HG       +  K L++  KM     E NY+
Sbjct: 631 YANHG-------EGRKALQMLEKMMCEGIEPNYI 657



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 116/406 (28%), Positives = 202/406 (49%), Gaps = 10/406 (2%)

Query: 71  QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
            VVH   I  G  LD +LS  L+++YS+ G    A KVF ++ + ++V W  +++  +  
Sbjct: 64  NVVHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHH 123

Query: 131 GCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGE----SIHAVICKYGFES 185
           G  +E+  +F +  R     PN+++L+S ++A   +G    G      + + + K  F+ 
Sbjct: 124 GFYEESLVVFLDFWRTRKNSPNEYILSSFIQAC--SGLDGSGRWMVFQLQSFLVKSRFDR 181

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           D  VG  L+  Y++ G + Y   VF+A+  + +V+W  + S           L++FYQ++
Sbjct: 182 DVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLM 241

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
                P+      +L ACS L  +  GKQ+HAH +++  + +  +   L+D Y K G + 
Sbjct: 242 EGNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVR 301

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
            A   FD + NK++ ++T +++ Y Q    + A++ F  M   G+K + F  +S L  C+
Sbjct: 302 AAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCA 361

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
            +  L  G  +H+  +K     D +V+ +L+ MYAKC  + +A  VF   A  D   +N 
Sbjct: 362 SLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNA 421

Query: 426 MIGGYVKHGLG---EKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
           MI GY + G       AL  F  M      P  +TFV +L A + +
Sbjct: 422 MIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASL 467


>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 998

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/598 (33%), Positives = 321/598 (53%), Gaps = 1/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F  +      +W  ++ GY++ G  Q  + LF  MK+      K+ LS+VL     
Sbjct: 195 ARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVCPDKYVLSSVLSACLM 254

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
             +++ G+ +H   +R G  +D  +    +D Y KC       K+F R+ D +VV+W  +
Sbjct: 255 LKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTV 314

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q    ++A  +F  M      P+ F  TS++ +         G  +HA   K   
Sbjct: 315 IAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNI 374

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           ++D  V N L+ MY +   ++   +VF  +A  D VS+NA+   +   +   + L +F +
Sbjct: 375 DNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMIEGYSRQDKLCEALDLFRE 434

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M L    P +  F+ +L   +SL  +    Q+H   IK+ +  +   G++L+D+Y K   
Sbjct: 435 MRLSLSSPTLLIFVSLLGVSASLYHLELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSR 494

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           + DA + F+ + +KD+  +TA+ + Y Q  E E +LK ++ +++  +K NEFT A+ +  
Sbjct: 495 VGDARLVFEEIQDKDIVVWTAMFSGYTQQSENEESLKLYKCLQMSRLKPNEFTFAAVITA 554

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
            S +A+L +G+  H+  +K G   D FV+  LV MYAK GSI++A   F  +  +DTA W
Sbjct: 555 ASNIASLRHGQQFHNQVIKMGFDDDPFVANTLVDMYAKSGSIEEAHKAFISTNWKDTACW 614

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N MI  Y +HG  EKAL+ F  M+ EG  P+ +TFV VLSACSH GL++ G  HF S+ +
Sbjct: 615 NSMIATYAQHGEAEKALQVFEDMIMEGLKPNYVTFVGVLSACSHTGLLDLGFDHFDSMSQ 674

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            +GI P I+H+ CM+ +LGRAGK  E + FI +  +   A+VW +LL AC   GN+EL  
Sbjct: 675 -FGIEPGIEHYVCMVSLLGRAGKLYEAKEFIEKMPIKQAAVVWRSLLSACRVSGNVELGT 733

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
             AE  +   P    +YV  S+I A++G W +   +R  +   G+ KEP CSWIEV+ 
Sbjct: 734 YAAEMAISCNPADSGSYVLLSNIFASKGMWVNVRRLREKMDISGVVKEPGCSWIEVNN 791



 Score =  231 bits (589), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 147/565 (26%), Positives = 272/565 (48%), Gaps = 17/565 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCS-MKDMEKKFSKFSLSTVLKGFA 62
           A ++F +M   N+V+W+++++ Y       + + LF   M+   +K +++ L++V++   
Sbjct: 93  ANKLFDTMSHKNLVTWSSMVSMYTHHSHCLEALMLFVQFMRSCNEKPNEYILASVVRACT 152

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
             G +     +H + ++ G   D ++  SL+D Y+K    D+A  +F  ++      W  
Sbjct: 153 QFGGLNPALQIHGLVVKGGYVQDVYVCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTT 212

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           II    +QG  Q + K+F+ M+E  V P+++VL+S++ A         G+ IH  + + G
Sbjct: 213 IIAGYSKQGRSQVSLKLFDQMKEGHVCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSG 272

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
              D  + N  +  Y +  +V  G ++F+ +  ++ VSW  + +           L +F 
Sbjct: 273 IVMDVSMVNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFV 332

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M   G+ P+      +L +C SL  +  G+Q+HA+ IK ++D +  V   L+DMY K  
Sbjct: 333 EMARMGWNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCD 392

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            L DA   F+ +A  DL +Y A+I  Y++  +   AL  FR+MRL           S L 
Sbjct: 393 SLTDARKVFNLMAAIDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLG 452

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
             + +  L     +H + +K G  LD F  +AL+ +Y+KC  + DA  VF+    +D   
Sbjct: 453 VSASLYHLELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVV 512

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSI 481
           W  M  GY +    E++L+ ++ +      P+E TF  V++A S++  +  G++ H   I
Sbjct: 513 WTAMFSGYTQQSENEESLKLYKCLQMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQVI 572

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
           K  +   P + +   ++D+  ++G   E       T     A  W +++   + HG    
Sbjct: 573 KMGFDDDPFVAN--TLVDMYAKSGSIEEAHKAFISTNWKDTA-CWNSMIATYAQHG---- 625

Query: 542 DEKDAEKLLELEPKM-----ESNYV 561
              +AEK L++   M     + NYV
Sbjct: 626 ---EAEKALQVFEDMIMEGLKPNYV 647



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 123/373 (32%), Positives = 191/373 (51%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++L +++F  M + NVVSW  ++ G  ++   +  + LF  M  M      F  ++VL  
Sbjct: 293 VQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNS 352

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +   ++ G+ VHA AI++    D F+   L+DMY+KC    +A KVF  +   D+V++
Sbjct: 353 CGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSY 412

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    +Q    EA  +F  MR S   P   +  SL+  +           IH +I K
Sbjct: 413 NAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLELSNQIHGLIIK 472

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           YG   D   G+AL+ +Y +  RV     VFE I  +D V W A+FS +      ++ L++
Sbjct: 473 YGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGYTQQSENEESLKL 532

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           +  + +   KPN  TF  ++ A S+++ +  G+Q H   IK   D +  V  +LVDMY K
Sbjct: 533 YKCLQMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQVIKMGFDDDPFVANTLVDMYAK 592

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
           SG +E+A  AF S   KD   + ++I +YAQ GEAE AL+ F  M +EG+K N  T    
Sbjct: 593 SGSIEEAHKAFISTNWKDTACWNSMIATYAQHGEAEKALQVFEDMIMEGLKPNYVTFVGV 652

Query: 361 LNGCSPVATLANG 373
           L+ CS    L  G
Sbjct: 653 LSACSHTGLLDLG 665



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 133/515 (25%), Positives = 232/515 (45%), Gaps = 9/515 (1%)

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGC-ALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD 116
           L     S +I   + +H+  +  G    D FL  +L+  YSK  L ++A K+F  +   +
Sbjct: 45  LANLLQSPHIPCCKKIHSKIVVFGFHKHDIFLVNTLLHAYSKLNLVNHANKLFDTMSHKN 104

Query: 117 VVAWGAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH 175
           +V W ++++       C EA  +F   MR  + KPN+++L S+VRA T+ G       IH
Sbjct: 105 LVTWSSMVSMYTHHSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFGGLNPALQIH 164

Query: 176 AVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD 235
            ++ K G+  D  V  +L+  Y ++  +     +F+ +  + S +W  + + +       
Sbjct: 165 GLVVKGGYVQDVYVCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQ 224

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
             L++F QM      P+      +L AC  L  +  GKQ+H + ++  +  +  +    +
Sbjct: 225 VSLKLFDQMKEGHVCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFI 284

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
           D Y K   ++     FD + +K++ ++T +I    Q      AL  F +M   G   + F
Sbjct: 285 DFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAF 344

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
              S LN C  +  L  GR +H+ A+K     D FV   L+ MYAKC S+ DA  VF   
Sbjct: 345 GCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLM 404

Query: 416 ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           A  D  S+N MI GY +     +AL+ FR M      P  + FV +L   + +  +E   
Sbjct: 405 AAIDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLELSN 464

Query: 476 KHFSSIKKIYGITPTIKHFA--CMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           +    I K YG+  ++  FA   +ID+  +  +  +      E +   + +VW  +    
Sbjct: 465 QIHGLIIK-YGV--SLDEFAGSALIDVYSKCSRVGDARLVFEEIQ-DKDIVVWTAMFSGY 520

Query: 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDISA 568
           +     E   K   K L++     + + F + I+A
Sbjct: 521 TQQSENEESLK-LYKCLQMSRLKPNEFTFAAVITA 554


>gi|449450476|ref|XP_004142988.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 692

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/598 (36%), Positives = 317/598 (53%), Gaps = 20/598 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGD--GQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           AK VF+S+   +VVSWN L+NGY++ G      VM LF  M+      +  + S V    
Sbjct: 64  AKLVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAA 123

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           ++S     G   HA+AI+     D F+  SL++MY K G   +A KVF  I + + V+W 
Sbjct: 124 SSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWA 183

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            II+    +    EA ++F LMR      ++F+ TS++ A T       G+ IH +  K 
Sbjct: 184 TIISGYAMERMAFEAWELFLLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKN 243

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G  S   VGNALV+MY + G +    + FE    +D ++W+A+ + +       + L +F
Sbjct: 244 GLLSIASVGNALVTMYGKCGCLDDAFKTFELSGDKDDITWSAMITGYAQAGDSHEALNLF 303

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
           Y M L G KP+  TF+ ++ ACS +  +  GKQ+H +++K   +           +  K 
Sbjct: 304 YNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFRKGFDYLKAKC 363

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G L DA   FD L   D+  +T+                   +M++E I  +E T+AS L
Sbjct: 364 GSLVDARKGFDYLKEPDIVLWTSC------------------RMQMERIMPHELTMASVL 405

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
             CS +A L  G+ +H+  +K G  L++ + +AL  MYAKCGS++D   VF+    RD  
Sbjct: 406 RACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIM 465

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           +WN MI G  ++G G KALE F  +      PD +TFV VLSACSHMGL+E GK +F  +
Sbjct: 466 TWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSACSHMGLVERGKVYFRMM 525

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
              +GI P ++H+ACM+DIL RAGK  E + FI    +     +W  LLGAC  + N EL
Sbjct: 526 LDEFGIIPRVEHYACMVDILSRAGKLHETKEFIESATIDHGMCLWRILLGACRNYRNYEL 585

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
                EKL+EL  +  S Y+  S I    GR +D   VR L+  +G+ KEP CSWIE+
Sbjct: 586 GAYAGEKLMELGSQESSAYILLSSIYTALGRSDDVERVRRLMKLRGVNKEPGCSWIEL 643



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 135/474 (28%), Positives = 226/474 (47%), Gaps = 24/474 (5%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           ++ G+ +HA  +R G     +L+ SLV++Y+KCG    A  VF  I + DVV+W  +I  
Sbjct: 26  LQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESITNKDVVSWNCLING 85

Query: 127 LDQQGCCQEA--AKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
             Q+G    +   ++F  MR  +  PN    + +  A + + +   G   HA+  K    
Sbjct: 86  YSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTSNF 145

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
            D  VG++L++MY + G +    +VF+ I  +++VSW  + S +       +   +F  M
Sbjct: 146 YDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFLLM 205

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
             +    +   +  +L A +    V +GKQ+H   +K+ L     VG +LV MY K GCL
Sbjct: 206 RREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCL 265

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
           +DA   F+   +KD   ++A+IT YAQAG++  AL  F  M L G K +EFT    +N C
Sbjct: 266 DDAFKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINAC 325

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
           S +  L  G+ +H  ++K G+   ++       + AKCGS+ DA   F      D   W 
Sbjct: 326 SDIGALEEGKQIHGYSLKAGYECQIYFRKGFDYLKAKCGSLVDARKGFDYLKEPDIVLWT 385

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKK 483
                            + RM + E  +P E+T   VL ACS +  +E+GK+ H  +IK 
Sbjct: 386 -----------------SCRMQM-ERIMPHELTMASVLRACSSLAALEQGKQIHAQTIK- 426

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
            YG +  +   + +  +  + G   E  N +     + + + W  ++   S +G
Sbjct: 427 -YGFSLEVPIGSALSTMYAKCGSL-EDGNLVFRRMPSRDIMTWNAMISGLSQNG 478



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 117/341 (34%), Positives = 177/341 (51%), Gaps = 3/341 (0%)

Query: 148 VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGS 207
           + P       L+   T   D + G++IHA + + G  S   + N+LV++Y + G +    
Sbjct: 6   LPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAK 65

Query: 208 RVFEAIAHQDSVSWNALFSRFQDYESPDQG--LRIFYQMLLKGFKPNMCTFIVILKACSS 265
            VFE+I ++D VSWN L + +    +      + +F +M  +   PN  TF  +  A SS
Sbjct: 66  LVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASS 125

Query: 266 LSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
             +   G Q HA  IK S   +  VG+SL++MY K GC+ DA   FD++  ++  ++  I
Sbjct: 126 SPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATI 185

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH 385
           I+ YA    A  A + F  MR E    ++F   S L+  +    +  G+ +H +A+K G 
Sbjct: 186 ISGYAMERMAFEAWELFLLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGL 245

Query: 386 LLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRM 445
           L    V  ALV MY KCG +DDA   F+ S  +D  +W+ MI GY + G   +AL  F  
Sbjct: 246 LSIASVGNALVTMYGKCGCLDDAFKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYN 305

Query: 446 MLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIY 485
           M   G  P E TFV V++ACS +G +EEGK+ H  S+K  Y
Sbjct: 306 MHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGY 346



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 116/235 (49%), Gaps = 2/235 (0%)

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M L    P   +F+ +L  C+   D+  GK +HA  ++     +  +  SLV++Y K G 
Sbjct: 1   MNLYLLPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGS 60

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEA--EMALKCFRKMRLEGIKSNEFTLASCL 361
           +  A + F+S+ NKD+ ++  +I  Y+Q G       ++ F++MR E    N  T +   
Sbjct: 61  IVKAKLVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVF 120

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
              S       G   H++A+KT +  D+FV ++L+ MY K G + DA  VF     R+T 
Sbjct: 121 TAASSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTV 180

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
           SW  +I GY    +  +A E F +M  E    D+  +  VLSA +   L+  GK+
Sbjct: 181 SWATIISGYAMERMAFEAWELFLLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQ 235



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 6/97 (6%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E    VF+ MP  ++++WNA+++G +++G+G K + LF  ++    K    +   VL  
Sbjct: 449 LEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSA 508

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYS 97
            ++ G ++ G+V   M       LD+F     V+ Y+
Sbjct: 509 CSHMGLVERGKVYFRM------MLDEFGIIPRVEHYA 539


>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
 gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
 gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
 gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 834

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/603 (32%), Positives = 331/603 (54%), Gaps = 4/603 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+ VF ++PE + V+W  +++G  + G     + LF  + +       + LSTVL  
Sbjct: 199 IDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSA 258

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +   +++ G+ +HA  +R G  +D  L   L+D Y KCG    A K+F  + + ++++W
Sbjct: 259 CSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISW 318

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +++   Q    +EA ++F  M +  +KP+ +  +S++ +         G  +HA   K
Sbjct: 319 TTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIK 378

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNAL---FSRFQDYESPDQG 237
               +D+ V N+L+ MY +   ++   +VF+  A  D V +NA+   +SR        + 
Sbjct: 379 ANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEA 438

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           L IF  M  +  +P++ TF+ +L+A +SL+ +G  KQ+H    K+ L+ +   G++L+D+
Sbjct: 439 LNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDV 498

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y    CL+D+ + FD +  KDL  + ++   Y Q  E E AL  F +++L   + +EFT 
Sbjct: 499 YSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTF 558

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           A+ +     +A++  G+  H   +K G   + +++ AL+ MYAKCGS +DA   F  +A 
Sbjct: 559 ANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAAS 618

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           RD   WN +I  Y  HG G+KAL+    M+ EG  P+ ITFV VLSACSH GL+E+G K 
Sbjct: 619 RDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQ 678

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F  + + +GI P  +H+ CM+ +LGRAG+  +    I +    P A+VW +LL  C+  G
Sbjct: 679 FELMLR-FGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAG 737

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           N+EL E  AE  +  +PK   ++   S+I A++G W +   VR  +  +G+ KEP  SWI
Sbjct: 738 NVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKVEGVVKEPGRSWI 797

Query: 598 EVD 600
            ++
Sbjct: 798 GIN 800



 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 165/599 (27%), Positives = 295/599 (49%), Gaps = 27/599 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFC----SMKDMEKKFSKFSLST 56
           M  A++VF+ MPE N+VSW+ +++     G  ++ + +F     + KD   ++   S   
Sbjct: 95  MVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQ 154

Query: 57  VLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD 116
              G    G     Q+  +  ++ G   D ++   L+D Y K G  D A  VF  + +  
Sbjct: 155 ACSGLDGRGRWMVFQL-QSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKS 213

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
            V W  +I+   + G    + ++F  + E +V P+ ++L++++ A +       G+ IHA
Sbjct: 214 TVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHA 273

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
            I +YG E D  + N L+  Y++ GRV    ++F  + +++ +SW  L S ++      +
Sbjct: 274 HILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKE 333

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            + +F  M   G KP+M     IL +C+SL  +GFG Q+HA+TIK +L  +  V  SL+D
Sbjct: 334 AMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLID 393

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG---EAEMALKCFRKMRLEGIKSN 353
           MY K  CL DA   FD  A  D+  + A+I  Y++ G   E   AL  FR MR   I+ +
Sbjct: 394 MYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPS 453

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
             T  S L   + + +L   + +H +  K G  LD+F  +AL+ +Y+ C  + D+  VF 
Sbjct: 454 LLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFD 513

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
              ++D   WN M  GYV+    E+AL  F  +      PDE TF  +++A  ++  ++ 
Sbjct: 514 EMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQL 573

Query: 474 GKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
           G++ H   +K+     P I +   ++D+  + G   E  +   ++  + + + W +++ +
Sbjct: 574 GQEFHCQLLKRGLECNPYITN--ALLDMYAKCGS-PEDAHKAFDSAASRDVVCWNSVISS 630

Query: 533 CSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
            + HG       + +K L++  KM S  + P+ I+        F GV +  S  G+ ++
Sbjct: 631 YANHG-------EGKKALQMLEKMMSEGIEPNYIT--------FVGVLSACSHAGLVED 674



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 125/453 (27%), Positives = 228/453 (50%), Gaps = 7/453 (1%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
            + +L+  A+   +    VVH   I  G  LD +LS  L+++YS+ G    A KVF ++ 
Sbjct: 47  FARLLQLRASDDLLHYQNVVHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMP 106

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATT--ETGDQRC 170
           + ++V+W  +++  +  G  +E+  +F    R     PN+++L+S ++A +  +   +  
Sbjct: 107 ERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWM 166

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
              + + + K GF+ D  VG  L+  Y+++G + Y   VF+A+  + +V+W  + S    
Sbjct: 167 VFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVK 226

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
                  L++FYQ++     P+      +L ACS L  +  GKQ+HAH +++ L+ +  +
Sbjct: 227 MGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASL 286

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
              L+D Y K G +  A   F+ + NK++ ++T +++ Y Q    + A++ F  M   G+
Sbjct: 287 MNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGL 346

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
           K + +  +S L  C+ +  L  G  +H+  +K     D +V+ +L+ MYAKC  + DA  
Sbjct: 347 KPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARK 406

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLG---EKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
           VF   A  D   +N MI GY + G      +AL  FR M      P  +TFV +L A + 
Sbjct: 407 VFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASAS 466

Query: 468 MGLIEEGKKHFSSIKKIYGITPTIKHFACMIDI 500
           +  +   K+    + K YG+   I   + +ID+
Sbjct: 467 LTSLGLSKQIHGLMFK-YGLNLDIFAGSALIDV 498


>gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 934

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/600 (33%), Positives = 326/600 (54%), Gaps = 4/600 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  VF  M E + +SWN+++     +G  +K +  F  M+    K    ++S +L  
Sbjct: 211 IEEASCVFDDMKERDTISWNSIITASVHNGHCEKSLEYFSQMRYTHAKTDYITISALLPV 270

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             ++  ++ G+ +H M ++ G   +  +  SL+ MYS+ G +++A  VF+++++ D+++W
Sbjct: 271 CGSAQNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEFVFHKMRERDLISW 330

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +++      G    A ++   M ++    N    T+ + A       +    +HA +  
Sbjct: 331 NSMMASHVDNGNYPRALELLIEMLQTRKATNYVTFTTALSACYNLETLKI---VHAFVIL 387

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G   + ++GNALV+MY + G ++   RV + +  +D V+WNAL     D + P+  +  
Sbjct: 388 LGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIGGHADNKEPNAAIEA 447

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDV-GFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           F  +  +G   N  T + +L A  S  D+   G  +HAH +    +    V +SL+ MY 
Sbjct: 448 FNLLREEGVPVNYITIVNLLSAFLSPDDLLDHGMPIHAHIVVAGFELETFVQSSLITMYA 507

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           + G L  +   FD LANK+   + AI+++ A  G  E ALK   KMR +GI  ++F+ + 
Sbjct: 508 QCGDLNTSNYIFDVLANKNSSTWNAILSANAHYGPGEEALKLIIKMRNDGIHLDQFSFSV 567

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
                  +  L  G+ LHS+ +K G   + +V  A + MY KCG IDD   +      R 
Sbjct: 568 AHAIIGNLTLLDEGQQLHSLIIKHGFESNDYVLNATMDMYGKCGEIDDVFRILPQPRSRS 627

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SWN++I    +HG  ++A EAF  MLD G  PD +TFV +LSACSH GL++EG  +FS
Sbjct: 628 QRSWNILISALARHGFFQQAREAFHEMLDLGLRPDHVTFVSLLSACSHGGLVDEGLAYFS 687

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           S+   +G+   I+H  C+ID+LGRAGK TE ENFI +  + P  LVW +LL AC  HGN+
Sbjct: 688 SMSTKFGVPTGIEHCVCIIDLLGRAGKLTEAENFINKMPVPPTDLVWRSLLAACKIHGNL 747

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           EL  K A++L EL+   +S YV  S++ A+  RW D   VR  + S  IKK+P+CSW+++
Sbjct: 748 ELARKAADRLFELDSSDDSAYVLYSNVCASTRRWRDVENVRKQMESHNIKKKPACSWVKL 807



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 154/561 (27%), Positives = 270/561 (48%), Gaps = 14/561 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ VF  MPE N  SWN L++G+   G  QK M  FC M +   + S +  ++++  
Sbjct: 8   IEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYVAASLVTA 67

Query: 61  FANSGYIKAGQV-VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
              SG +  G   VHA  I+ G A D F+  SL+  Y   G       VF  I++P++V+
Sbjct: 68  CDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEIEEPNIVS 127

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W +++      GC +E   ++  +R   V  N+  + +++R+     D+  G  +   + 
Sbjct: 128 WTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGYQVLGSVI 187

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K G ++   V N+L+SM+     +   S VF+ +  +D++SWN++ +        ++ L 
Sbjct: 188 KSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNGHCEKSLE 247

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
            F QM     K +  T   +L  C S  ++ +G+ LH   +K  L+ N  V  SL+ MY 
Sbjct: 248 YFSQMRYTHAKTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYS 307

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           ++G  EDA   F  +  +DL ++ +++ S+   G    AL+   +M      +N  T  +
Sbjct: 308 QAGKSEDAEFVFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKATNYVTFTT 367

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L+ C  + TL   +++H+  +  G   ++ +  ALV MY K GS+  A+ V K    RD
Sbjct: 368 ALSACYNLETL---KIVHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIMPDRD 424

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA-CSHMGLIEEGKKHF 478
             +WN +IGG+  +     A+EAF ++ +EG   + IT V +LSA  S   L++ G    
Sbjct: 425 EVTWNALIGGHADNKEPNAAIEAFNLLREEGVPVNYITIVNLLSAFLSPDDLLDHGMPIH 484

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           + I  + G        + +I +  + G      N+I +     N+  W  +L A + +G 
Sbjct: 485 AHI-VVAGFELETFVQSSLITMYAQCGDLN-TSNYIFDVLANKNSSTWNAILSANAHYG- 541

Query: 539 IELDEKDAEKLLELEPKMESN 559
                   E+ L+L  KM ++
Sbjct: 542 ------PGEEALKLIIKMRND 556



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/375 (29%), Positives = 185/375 (49%), Gaps = 1/375 (0%)

Query: 95  MYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFV 154
           MYSK G  ++A  VF ++ + +  +W  +++   + G  Q+A + F  M E  V+P+ +V
Sbjct: 1   MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYV 60

Query: 155 LTSLVRATTETGDQRCGE-SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAI 213
             SLV A   +G    G   +HA + K G   D  VG +L+  Y   G V+    VF+ I
Sbjct: 61  AASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEI 120

Query: 214 AHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGK 273
              + VSW +L   +       + + ++ ++   G   N      ++++C  L D   G 
Sbjct: 121 EEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGY 180

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
           Q+    IK  LD    V  SL+ M+     +E+A   FD +  +D  ++ +IIT+    G
Sbjct: 181 QVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNG 240

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST 393
             E +L+ F +MR    K++  T+++ L  C     L  GR LH + VK+G   ++ V  
Sbjct: 241 HCEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCN 300

Query: 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP 453
           +L++MY++ G  +DAE VF     RD  SWN M+  +V +G   +ALE    ML      
Sbjct: 301 SLLSMYSQAGKSEDAEFVFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKAT 360

Query: 454 DEITFVVVLSACSHM 468
           + +TF   LSAC ++
Sbjct: 361 NYVTFTTALSACYNL 375



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 74/145 (51%), Gaps = 5/145 (3%)

Query: 398 MYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEIT 457
           MY+K GSI+ A+ VF     R+ ASWN ++ G+V+ G  +KA++ F  ML+ G  P    
Sbjct: 1   MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYV 60

Query: 458 FVVVLSACSHMGLIEEG--KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFIT 515
              +++AC   G + EG  + H   IK   G+   +     ++   G  G   E++    
Sbjct: 61  AASLVTACDRSGCMTEGAFQVHAHVIK--CGLACDVFVGTSLLHFYGTFGWVAEVDMVFK 118

Query: 516 ETKLTPNALVWENLLGACSWHGNIE 540
           E +  PN + W +L+   +++G ++
Sbjct: 119 EIE-EPNIVSWTSLMVGYAYNGCVK 142


>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
          Length = 803

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/603 (33%), Positives = 322/603 (53%), Gaps = 43/603 (7%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A R+F  M   N VS+ A++ G A++G     + LF  M          S+S+VL   A 
Sbjct: 195 AVRLFYGMARPNEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLGACAQ 254

Query: 64  S--------GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP 115
           +           + GQ +HA+ +R G   D+ +  SL+DMY+KC   D A+KVF  +   
Sbjct: 255 ACATDYSVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSV 314

Query: 116 DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH 175
            +V+W  +IT   Q+G C +A ++ +LM+E+  +PN+   ++L+ +  +  D        
Sbjct: 315 TIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKARD-------- 366

Query: 176 AVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD 235
                                      V     +F+ I+     +WN L S +   E   
Sbjct: 367 ---------------------------VHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQ 399

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
             + +F +M  +  +P+  T  VIL +CS L  + FG+Q+H+ +++  L  +  V + LV
Sbjct: 400 DTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLV 459

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
           DMY K G +  A   F+ +  +D+  + +II+        + A   F++MR  GI   E 
Sbjct: 460 DMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTES 519

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
           + AS +N CS ++++ +GR +H+  +K G+  +++V +AL+ MYAKCG++DDA   F   
Sbjct: 520 SYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTM 579

Query: 416 ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
            +++  +WN MI GY ++GLG+KA+E F  ML     PD +TF+ VL+ CSH GL+++  
Sbjct: 580 MMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAM 639

Query: 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
             F+S++  YGI P  +H+ C+ID LGRAG+F E+E  I +     + ++WE LL AC  
Sbjct: 640 AFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAACVV 699

Query: 536 HGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCS 595
           H N EL +  AE L  ++PK  S YV  S+I A+ GR  D S VRAL+S++G+ K    S
Sbjct: 700 HHNAELGKCAAEHLFRIDPKNPSPYVLLSNIYASLGRHGDASAVRALMSNRGVVKGRGYS 759

Query: 596 WIE 598
           WI+
Sbjct: 760 WID 762



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 124/525 (23%), Positives = 217/525 (41%), Gaps = 88/525 (16%)

Query: 85  DKFLSCSLVDMYSKCGLADNALKVFYRIKDP----------------------------- 115
           D FL+  LV++YS+ GL  +AL  F  +  P                             
Sbjct: 42  DTFLANRLVELYSRAGLPRHALLAFRALPSPNDYSYNAALSAACRAGDLDAARDLLGGMP 101

Query: 116 --DVVAWGAIITCLDQQ-GCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172
             + V+W  +I+ L +  G   EA +++  MR   + P  F L S++ A         G 
Sbjct: 102 RRNAVSWNTVISALARSPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSACGGLAALGDGR 161

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
             H V  K G +++  V NAL+ MY + G V    R+F  +A  + VS+ A+        
Sbjct: 162 RCHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQTG 221

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGF--------GKQLHAHTIKHSL 284
           S D  LR+F +M   G   +  +   +L AC+      +        G+ +HA  ++   
Sbjct: 222 SIDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATDYSVARAFRLGQAIHALVVRKGF 281

Query: 285 DGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRK 344
             +  VG SL+DMY K   +++A   F+SL +  + ++  +IT + Q G    A++    
Sbjct: 282 GSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSL 341

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404
           M+  G + NE T ++ L  C         R +HS                          
Sbjct: 342 MQEAGFEPNEVTYSNLLASC------IKARDVHS-------------------------- 369

Query: 405 IDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
              A A+F   +     +WN ++ GY +    +  +E FR M  +   PD  T  V+LS+
Sbjct: 370 ---ARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSS 426

Query: 465 CSHMGLIEEGKK-HFSSIK-KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPN 522
           CS +G+++ G++ H +S++  ++           M    G+ G    I N +TE     +
Sbjct: 427 CSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTER----D 482

Query: 523 ALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            + W +++   + H       K+A    +   +M  N + P++ S
Sbjct: 483 VVCWNSIISGLTIHSL----NKEA---FDFFKQMRENGIMPTESS 520



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 83/164 (50%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           +A+ +F  M E +VV WN++++G       ++    F  M++     ++ S ++++   +
Sbjct: 470 IARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCS 529

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
               I  G+ +HA  ++ G   + ++  +L+DMY+KCG  D+A   F  +   ++VAW  
Sbjct: 530 RLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNE 589

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
           +I    Q G   +A ++F  M  +  KP+     +++   + +G
Sbjct: 590 MIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSG 633



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 7/167 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A+  F +M   N+V+WN +++GYA++G G K + LF  M   E+K    +   VL G
Sbjct: 569 MDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTG 628

Query: 61  FANSGYI-KAGQVVHAMAIRLG-CALDKFLSCSLVDMYSKCGLADNALKVFYRI--KDPD 116
            ++SG + KA    ++M    G   L +  +C L+D   + G       + +++  KD D
Sbjct: 629 CSHSGLVDKAMAFFNSMENSYGIIPLAEHYTC-LIDALGRAGRFVEVEALIHKMPCKD-D 686

Query: 117 VVAWGAII-TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRAT 162
            + W  ++  C+             +L R     P+ +VL S + A+
Sbjct: 687 PIIWEVLLAACVVHHNAELGKCAAEHLFRIDPKNPSPYVLLSNIYAS 733


>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Glycine max]
          Length = 849

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 199/597 (33%), Positives = 328/597 (54%), Gaps = 1/597 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F  +     V+W A++ GYA+ G  +  + LF  M++ +    ++ +S+VL   + 
Sbjct: 208 ARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVLSACSM 267

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
             +++ G+ +H   +R G  +D  +   ++D Y KC       K+F R+ D DVV+W  +
Sbjct: 268 LEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTM 327

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q     +A  +F  M     KP+ F  TS++ +       + G  +HA   K   
Sbjct: 328 IAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYAIKVNI 387

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           ++D  V N L+ MY +   ++   +VF+ +A  + VS+NA+   +   +   + L +F +
Sbjct: 388 DNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFRE 447

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M L    P + TF+ +L   SSL  +    Q+H   IK  +  +   G++L+D+Y K  C
Sbjct: 448 MRLSLSPPTLLTFVSLLGLSSSLFLLELSSQIHCLIIKFGVSLDSFAGSALIDVYSKCSC 507

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           + DA + F+ + ++D+  + A+ + Y+Q  E E +LK ++ +++  +K NEFT A+ +  
Sbjct: 508 VGDARLVFEEIYDRDIVVWNAMFSGYSQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAA 567

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
            S +A+L +G+  H+  +K G   D FV+ +LV MYAKCGSI+++   F  +  RD A W
Sbjct: 568 ASNIASLRHGQQFHNQVIKMGLDDDPFVTNSLVDMYAKCGSIEESHKAFSSTNQRDIACW 627

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N MI  Y +HG   KALE F  M+ EG  P+ +TFV +LSACSH GL++ G  HF S+ K
Sbjct: 628 NSMISTYAQHGDAAKALEVFERMIMEGVKPNYVTFVGLLSACSHAGLLDLGFHHFESMSK 687

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            +GI P I H+ACM+ +LGRAGK  E + F+ +  + P A+VW +LL AC   G++EL  
Sbjct: 688 -FGIEPGIDHYACMVSLLGRAGKIYEAKEFVKKMPIKPAAVVWRSLLSACRVSGHVELGT 746

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
             AE  +  +P    +Y+  S+I A++G W     VR  +    + KEP  SWIEV+
Sbjct: 747 YAAEMAISCDPADSGSYILLSNIFASKGMWASVRMVREKMDMSRVVKEPGWSWIEVN 803



 Score =  254 bits (649), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 159/566 (28%), Positives = 286/566 (50%), Gaps = 12/566 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCS-MKDMEKKFSKFSLSTVLKGFA 62
           A+++F +MP  N+V+W+++++ Y + G   + + LFC  M+   +K +++ L++V++   
Sbjct: 106 AQKLFDTMPHRNLVTWSSMVSMYTQHGYSVEALLLFCRFMRSCSEKPNEYILASVVRACT 165

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
             G +     +H   ++ G   D ++  SL+D Y+K G  D A  +F  +K    V W A
Sbjct: 166 QLGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGYVDEARLIFDGLKVKTTVTWTA 225

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           II    + G  + + K+FN MRE  V P+++V++S++ A +       G+ IH  + + G
Sbjct: 226 IIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRG 285

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F+ D  V N ++  Y++  +V  G ++F  +  +D VSW  + +           + +F 
Sbjct: 286 FDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFV 345

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M+ KG+KP+      +L +C SL  +  G+Q+HA+ IK ++D +  V   L+DMY K  
Sbjct: 346 EMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCD 405

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            L +A   FD +A  ++ +Y A+I  Y++  +   AL  FR+MRL        T  S L 
Sbjct: 406 SLTNARKVFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSLLG 465

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
             S +  L     +H + +K G  LD F  +AL+ +Y+KC  + DA  VF+    RD   
Sbjct: 466 LSSSLFLLELSSQIHCLIIKFGVSLDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVV 525

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSI 481
           WN M  GY +    E++L+ ++ +      P+E TF  V++A S++  +  G++ H   I
Sbjct: 526 WNAMFSGYSQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAAASNIASLRHGQQFHNQVI 585

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
           K      P + +   ++D+  + G   E     + T     A  W +++   + HG    
Sbjct: 586 KMGLDDDPFVTN--SLVDMYAKCGSIEESHKAFSSTNQRDIA-CWNSMISTYAQHG---- 638

Query: 542 DEKDAEKLLELEPKMESNYVFPSDIS 567
              DA K LE+  +M    V P+ ++
Sbjct: 639 ---DAAKALEVFERMIMEGVKPNYVT 661



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 126/425 (29%), Positives = 213/425 (50%), Gaps = 8/425 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++  +++F  + + +VVSW  ++ G  ++      M LF  M     K   F  ++VL  
Sbjct: 306 VKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNS 365

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +   ++ G+ VHA AI++    D F+   L+DMY+KC    NA KVF  +   +VV++
Sbjct: 366 CGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVSY 425

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    +Q    EA  +F  MR S   P      SL+  ++          IH +I K
Sbjct: 426 NAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSLLGLSSSLFLLELSSQIHCLIIK 485

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +G   D+  G+AL+ +Y +   V     VFE I  +D V WNA+FS +      ++ L++
Sbjct: 486 FGVSLDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVWNAMFSGYSQQLENEESLKL 545

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           +  + +   KPN  TF  ++ A S+++ +  G+Q H   IK  LD +  V  SLVDMY K
Sbjct: 546 YKDLQMSRLKPNEFTFAAVIAAASNIASLRHGQQFHNQVIKMGLDDDPFVTNSLVDMYAK 605

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +E++  AF S   +D+  + ++I++YAQ G+A  AL+ F +M +EG+K N  T    
Sbjct: 606 CGSIEESHKAFSSTNQRDIACWNSMISTYAQHGDAAKALEVFERMIMEGVKPNYVTFVGL 665

Query: 361 LNGCSPVATLANG----RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
           L+ CS    L  G      +    ++ G  +D +    +V++  + G I +A+   K   
Sbjct: 666 LSACSHAGLLDLGFHHFESMSKFGIEPG--IDHY--ACMVSLLGRAGKIYEAKEFVKKMP 721

Query: 417 LRDTA 421
           ++  A
Sbjct: 722 IKPAA 726



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 121/389 (31%), Positives = 193/389 (49%), Gaps = 2/389 (0%)

Query: 73  VHAMAIRLGC-ALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQG 131
           +HA  + LG    D FL  +L+  YSK  L  +A K+F  +   ++V W ++++   Q G
Sbjct: 73  IHAHIVVLGFHQHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQHG 132

Query: 132 CCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVG 190
              EA  +F   MR  S KPN+++L S+VRA T+ G+      +H  + K GF  D  VG
Sbjct: 133 YSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQDVYVG 192

Query: 191 NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFK 250
            +L+  Y + G V     +F+ +  + +V+W A+ + +      +  L++F QM      
Sbjct: 193 TSLIDFYAKRGYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVY 252

Query: 251 PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVA 310
           P+      +L ACS L  +  GKQ+H + ++   D +  V   ++D Y K   ++     
Sbjct: 253 PDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKL 312

Query: 311 FDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATL 370
           F+ L +KD+ ++T +I    Q      A+  F +M  +G K + F   S LN C  +  L
Sbjct: 313 FNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQAL 372

Query: 371 ANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGY 430
             GR +H+ A+K     D FV   L+ MYAKC S+ +A  VF   A  +  S+N MI GY
Sbjct: 373 QKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVSYNAMIEGY 432

Query: 431 VKHGLGEKALEAFRMMLDEGYVPDEITFV 459
            +     +AL+ FR M      P  +TFV
Sbjct: 433 SRQDKLVEALDLFREMRLSLSPPTLLTFV 461



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 106/263 (40%), Gaps = 26/263 (9%)

Query: 308 GVAFDSLANKD----LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           G++     NKD       ++ ++  + Q  ++ + ++  RK+  E        L   L  
Sbjct: 10  GISHFKFLNKDNVSQTLHFSTLLPPFLQPHDSPILIQ--RKIGRE--------LGKLLQL 59

Query: 364 CSP-VATLANGRLLHSIAVKTG-HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
            SP + T    + +H+  V  G H  D+F+   L+  Y+K     DA+ +F     R+  
Sbjct: 60  PSPNILTSHYYKKIHAHIVVLGFHQHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLV 119

Query: 422 SWNMMIGGYVKHGLGEKALEAF-RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
           +W+ M+  Y +HG   +AL  F R M      P+E     V+ AC+ +G + +  +    
Sbjct: 120 TWSSMVSMYTQHGYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLGNLSQALQLHGF 179

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + K  G    +     +ID   + G   E    I +       + W  ++   +  G  E
Sbjct: 180 VVK-GGFVQDVYVGTSLIDFYAKRGYVDE-ARLIFDGLKVKTTVTWTAIIAGYAKLGRSE 237

Query: 541 LDEKDAEKLLELEPKMESNYVFP 563
           +        L+L  +M    V+P
Sbjct: 238 VS-------LKLFNQMREGDVYP 253


>gi|356565918|ref|XP_003551183.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Glycine max]
          Length = 703

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 204/599 (34%), Positives = 325/599 (54%), Gaps = 3/599 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A +VF  MP  + VSWNA+++ +A SGD      L  +M+     F   +  ++LKG A 
Sbjct: 47  AHQVFDEMPHRDTVSWNAIISAFASSGDLDTTWQLLGAMRRSTHAFDSRTFGSILKGVAY 106

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G +K GQ +H++ +++G + + F   +L+DMY+KCG  D+   VF  + + + V+W  +
Sbjct: 107 VGKLKLGQQLHSVMLKVGLSENVFSGSALLDMYAKCGRVDDGYVVFQSMPERNYVSWNTL 166

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    + G C  A  + + M    V+ +   ++ L+         +    +H  I K+G 
Sbjct: 167 VASYSRVGDCDMAFWVLSCMELEGVEIDDGTVSPLLTLLDNAMFYKLTMQLHCKIVKHGL 226

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFE-AIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           E    V NA ++ Y E   +    RVF+ A+  +D V+WN++   +  +E  D   ++F 
Sbjct: 227 ELFNTVCNATITAYSECCSLQDAERVFDGAVLCRDLVTWNSMLGAYLMHEKEDLAFKVFL 286

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK-- 300
            M   GF+P+  T+  I+ ACS       GK LH   IK  LD +  V  +L+ MY +  
Sbjct: 287 DMQNFGFEPDAYTYTGIVGACSVQEHKTCGKCLHGLVIKRGLDNSVPVSNALISMYIRFN 346

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
             C+EDA   F S+  KD   + +I+  Y Q G +E AL+ F +MR   I+ + +T ++ 
Sbjct: 347 DRCMEDALRIFFSMDLKDCCTWNSILAGYVQVGLSEDALRLFLQMRCLVIEIDHYTFSAV 406

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           +  CS +ATL  G+  H +A+K G   + +V ++L+ MY+KCG I+DA   F+ ++  + 
Sbjct: 407 IRSCSDLATLQLGQQFHVLALKVGFDTNSYVGSSLIFMYSKCGIIEDARKSFEATSKDNA 466

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
             WN +I GY +HG G  AL+ F MM +     D ITFV VL+ACSH GL+EEG     S
Sbjct: 467 IVWNSIIFGYAQHGQGNIALDLFYMMKERKVKLDHITFVAVLTACSHNGLVEEGCNFIES 526

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           ++  +GI P  +H+AC ID+ GRAG   +    +      P+A+V + LLGAC + G+IE
Sbjct: 527 MESDFGIPPRQEHYACAIDLYGRAGHLKKATALVETMPFEPDAMVLKTLLGACRFCGDIE 586

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           L  + A+ LLELEP+    YV  S++      W + + V  ++  +G+KK P  SWIEV
Sbjct: 587 LASQIAKILLELEPEEHCTYVILSEMYGRFKMWGEKASVTRMMRERGVKKVPGWSWIEV 645



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 126/475 (26%), Positives = 226/475 (47%), Gaps = 9/475 (1%)

Query: 74  HAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCC 133
           H  AI+LG   D + + +L+  Y+KC   ++A +VF  +   D V+W AII+     G  
Sbjct: 16  HCRAIKLGSIADPYTANNLITSYAKCTELNSAHQVFDEMPHRDTVSWNAIISAFASSGDL 75

Query: 134 QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNAL 193
               ++   MR S+   +     S+++     G  + G+ +H+V+ K G   +   G+AL
Sbjct: 76  DTTWQLLGAMRRSTHAFDSRTFGSILKGVAYVGKLKLGQQLHSVMLKVGLSENVFSGSAL 135

Query: 194 VSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
           + MY + GRV  G  VF+++  ++ VSWN L + +      D    +   M L+G + + 
Sbjct: 136 LDMYAKCGRVDDGYVVFQSMPERNYVSWNTLVASYSRVGDCDMAFWVLSCMELEGVEIDD 195

Query: 254 CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD- 312
            T   +L    +        QLH   +KH L+  + V  + +  Y +   L+DA   FD 
Sbjct: 196 GTVSPLLTLLDNAMFYKLTMQLHCKIVKHGLELFNTVCNATITAYSECCSLQDAERVFDG 255

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
           ++  +DL  + +++ +Y    + ++A K F  M+  G + + +T    +  CS       
Sbjct: 256 AVLCRDLVTWNSMLGAYLMHEKEDLAFKVFLDMQNFGFEPDAYTYTGIVGACSVQEHKTC 315

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS--IDDAEAVFKGSALRDTASWNMMIGGY 430
           G+ LH + +K G    + VS AL++MY +     ++DA  +F    L+D  +WN ++ GY
Sbjct: 316 GKCLHGLVIKRGLDNSVPVSNALISMYIRFNDRCMEDALRIFFSMDLKDCCTWNSILAGY 375

Query: 431 VKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITP 489
           V+ GL E AL  F  M       D  TF  V+ +CS +  ++ G++ H  ++K  +    
Sbjct: 376 VQVGLSEDALRLFLQMRCLVIEIDHYTFSAVIRSCSDLATLQLGQQFHVLALKVGFDTNS 435

Query: 490 TIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH--GNIELD 542
            +   + +I +  + G   +       T    NA+VW +++   + H  GNI LD
Sbjct: 436 YVG--SSLIFMYSKCGIIEDARKSFEATS-KDNAIVWNSIIFGYAQHGQGNIALD 487



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 88/166 (53%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A R+F SM   +  +WN++L GY + G  +  + LF  M+ +  +   ++ S V++ 
Sbjct: 350 MEDALRIFFSMDLKDCCTWNSILAGYVQVGLSEDALRLFLQMRCLVIEIDHYTFSAVIRS 409

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ++   ++ GQ  H +A+++G   + ++  SL+ MYSKCG+ ++A K F      + + W
Sbjct: 410 CSDLATLQLGQQFHVLALKVGFDTNSYVGSSLIFMYSKCGIIEDARKSFEATSKDNAIVW 469

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
            +II    Q G    A  +F +M+E  VK +     +++ A +  G
Sbjct: 470 NSIIFGYAQHGQGNIALDLFYMMKERKVKLDHITFVAVLTACSHNG 515



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 69/147 (46%), Gaps = 2/147 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A++ F++  + N + WN+++ GYA+ G G   + LF  MK+ + K    +   VL  
Sbjct: 451 IEDARKSFEATSKDNAIVWNSIIFGYAQHGQGNIALDLFYMMKERKVKLDHITFVAVLTA 510

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            +++G ++ G   + +M    G    +      +D+Y + G    A  +   +  +PD +
Sbjct: 511 CSHNGLVEEGCNFIESMESDFGIPPRQEHYACAIDLYGRAGHLKKATALVETMPFEPDAM 570

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRE 145
               ++      G  + A++I  ++ E
Sbjct: 571 VLKTLLGACRFCGDIELASQIAKILLE 597


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 208/608 (34%), Positives = 325/608 (53%), Gaps = 10/608 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + LA+ +F  +P   +  +NAL+  Y+  G    +       +    + + ++   VLK 
Sbjct: 79  LSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVLKA 138

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    +++ + VH  A R G   D F+S +LVD+Y+KC    +A  VF R+   DVVAW
Sbjct: 139 CSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVVAW 198

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A++      G   +      LM++    PN   L +L+    + G    G ++HA   +
Sbjct: 199 NAMLAGYALHGKYSDTIACLLLMQDDHA-PNASTLVALLPLLAQHGALSQGRAVHAYSVR 257

Query: 181 ----YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
               +  +   LVG AL+ MY + G + Y SRVFEA+A ++ V+W+AL   F       +
Sbjct: 258 ACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLE 317

Query: 237 GLRIFYQMLLKGF---KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
              +F  ML +G     P   +    L+AC++LSD+  GKQLHA   K  L  +   G S
Sbjct: 318 AFSLFKDMLAQGLCFLSPT--SVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNS 375

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           L+ MY K+G ++ A   FD +  KD  +Y+A+++ Y Q G+A+ A + FRKM+   ++ +
Sbjct: 376 LLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPD 435

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
             T+ S +  CS +A L +G+  H   +  G   +  +  AL+ MYAKCG ID +  +F 
Sbjct: 436 VATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFD 495

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
               RD  SWN MI GY  HGLG++A   F  M  +   PD++TF+ ++SACSH GL+ E
Sbjct: 496 VMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTE 555

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           GK+ F  +   YGITP ++H+  M+D+L R G   E   FI    L  +  VW  LLGAC
Sbjct: 556 GKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGAC 615

Query: 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPS 593
             H NI+L ++ +  + +L P+   N+V  S+I +  GR+++ + VR +   QG KK P 
Sbjct: 616 RVHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPG 675

Query: 594 CSWIEVDG 601
           CSWIE++G
Sbjct: 676 CSWIEING 683



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/444 (24%), Positives = 210/444 (47%), Gaps = 8/444 (1%)

Query: 99  CGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSL 158
           CG    A  +F +I  P +  + A+I     +G         +L R    +PN +    +
Sbjct: 76  CGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFV 135

Query: 159 VRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDS 218
           ++A +   D R   ++H    + G  +D  V  ALV +Y +     + + VF  +  +D 
Sbjct: 136 LKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDV 195

Query: 219 VSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAH 278
           V+WNA+ + +  +      +     ++     PN  T + +L   +    +  G+ +HA+
Sbjct: 196 VAWNAMLAGYALHGKYSDTIACLL-LMQDDHAPNASTLVALLPLLAQHGALSQGRAVHAY 254

Query: 279 TIK----HSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGE 334
           +++    H      +VGT+L+DMY K G L  A   F+++A ++   ++A++  +   G 
Sbjct: 255 SVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGR 314

Query: 335 AEMALKCFRKMRLEGI-KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST 393
              A   F+ M  +G+   +  ++AS L  C+ ++ L  G+ LH++  K+G   D+    
Sbjct: 315 MLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGN 374

Query: 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP 453
           +L++MYAK G ID A  +F    ++DT S++ ++ GYV++G  ++A   FR M      P
Sbjct: 375 SLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQP 434

Query: 454 DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENF 513
           D  T V ++ ACSH+  ++ GK    S+  + GI         +ID+  + G+  ++   
Sbjct: 435 DVATMVSLIPACSHLAALQHGKCGHGSV-IVRGIASETSICNALIDMYAKCGRI-DLSRQ 492

Query: 514 ITETKLTPNALVWENLLGACSWHG 537
           I +     + + W  ++     HG
Sbjct: 493 IFDVMPARDIVSWNTMIAGYGIHG 516


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 198/598 (33%), Positives = 324/598 (54%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+RVF  +P  + + WN +L GY +SGD    +  FC M+      +  + + +L   A 
Sbjct: 166 ARRVFDELPLRDTILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICAT 225

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G   AG  +H + I  G   D  ++ +LV MYSKCG    A K+F  +   D V W  +
Sbjct: 226 RGNFCAGTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGL 285

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q G   EAA +FN M  + VKP+     S + +  E+G  R  + +H+ I ++  
Sbjct: 286 IAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRV 345

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D  + +AL+ +Y + G V    ++F+     D     A+ S +  +      +  F  
Sbjct: 346 PFDVYLKSALIDVYFKGGDVEMARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRW 405

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           ++ +G   N  T   +L AC++++ +  GK+LH H +K  L+    VG+++ DMY K G 
Sbjct: 406 LIQEGMVTNSLTMASVLPACAAVAALKPGKELHCHILKKRLENIVNVGSAITDMYAKCGR 465

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L+ A   F  ++++D   + ++I+S++Q G+ E+A+  FR+M + G K +  +L+S L+ 
Sbjct: 466 LDLAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIAIDLFRQMGMSGAKFDSVSLSSALSA 525

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
            + +  L  G+ +H   ++     D FV++ L+ MY+KCG++  A  VF     ++  SW
Sbjct: 526 AANLPALYYGKEMHGYVIRNAFSSDTFVASTLIDMYSKCGNLALAWCVFNLMDGKNEVSW 585

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I  Y  HG   + L+ +  ML  G  PD +TF+V++SAC H GL++EG  +F  + +
Sbjct: 586 NSIIAAYGNHGCPRECLDLYHEMLRAGIHPDHVTFLVIISACGHAGLVDEGIHYFHCMTR 645

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            YGI   ++H+ACM+D+ GRAG+  E  + I     TP+A VW  LLGAC  HGN+EL +
Sbjct: 646 EYGIGARMEHYACMVDLYGRAGRVHEAFDTIKSMPFTPDAGVWGTLLGACRLHGNVELAK 705

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
             +  LLEL+PK    YV  S++ A  G W     VR+L+  +G++K P  SWI+V+G
Sbjct: 706 LASRHLLELDPKNSGYYVLLSNVHADAGEWASVLKVRSLMKEKGVQKIPGYSWIDVNG 763



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 139/535 (25%), Positives = 241/535 (45%), Gaps = 4/535 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A  +F  +     + WN ++ G    G     +  +  M        K++   V+K    
Sbjct: 65  AGNLFFELELRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGG 124

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +    VVH  A  LG  +D F   +L+ +Y+  G   +A +VF  +   D + W  +
Sbjct: 125 LNNVPLCMVVHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVM 184

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    + G    A   F  MR S    N    T ++      G+   G  +H ++   GF
Sbjct: 185 LRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGF 244

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E D  V N LV+MY + G + Y  ++F  +   D+V+WN L + +      D+   +F  
Sbjct: 245 EFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNA 304

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M+  G KP+  TF   L +      +   K++H++ ++H +  +  + ++L+D+Y K G 
Sbjct: 305 MISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGD 364

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +E A   F      D+   TA+I+ Y   G    A+  FR +  EG+ +N  T+AS L  
Sbjct: 365 VEMARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPA 424

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ VA L  G+ LH   +K      + V +A+  MYAKCG +D A   F+  + RD+  W
Sbjct: 425 CAAVAALKPGKELHCHILKKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCW 484

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK 482
           N MI  + ++G  E A++ FR M   G   D ++    LSA +++  +  GK+ H   I+
Sbjct: 485 NSMISSFSQNGKPEIAIDLFRQMGMSGAKFDSVSLSSALSAAANLPALYYGKEMHGYVIR 544

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
             +     +   + +ID+  + G    +   +       N + W +++ A   HG
Sbjct: 545 NAFSSDTFVA--STLIDMYSKCGNLA-LAWCVFNLMDGKNEVSWNSIIAAYGNHG 596



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 120/489 (24%), Positives = 221/489 (45%), Gaps = 4/489 (0%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
           L ++ +  +++  ++  + VH   I  G       S  ++ +Y  CG   +A  +F+ ++
Sbjct: 14  LESLFRACSDASMVQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLCGRFRDAGNLFFELE 73

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES 173
               + W  +I  L   G    A   +  M  S+V P+++    +++A     +      
Sbjct: 74  LRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMV 133

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           +H      GF  D   G+AL+ +Y +NG +    RVF+ +  +D++ WN +   +     
Sbjct: 134 VHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGD 193

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
            D  +  F +M       N  T+  IL  C++  +   G QLH   I    + +  V  +
Sbjct: 194 FDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQVANT 253

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           LV MY K G L  A   F+++   D   +  +I  Y Q G  + A   F  M   G+K +
Sbjct: 254 LVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPD 313

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
             T AS L       +L + + +HS  V+     D+++ +AL+ +Y K G ++ A  +F+
Sbjct: 314 SVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQ 373

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
            + L D A    MI GYV HGL   A+  FR ++ EG V + +T   VL AC+ +  ++ 
Sbjct: 374 QNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKP 433

Query: 474 GKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
           GK+ H   +KK   +   +   + + D+  + G+      F        +++ W +++ +
Sbjct: 434 GKELHCHILKK--RLENIVNVGSAITDMYAKCGRLDLAYEFFRRMS-DRDSVCWNSMISS 490

Query: 533 CSWHGNIEL 541
            S +G  E+
Sbjct: 491 FSQNGKPEI 499



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 157/316 (49%), Gaps = 6/316 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E+A+++F+    ++V    A+++GY   G     ++ F  +       +  ++++VL  
Sbjct: 365 VEMARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPA 424

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    +K G+ +H   ++        +  ++ DMY+KCG  D A + F R+ D D V W
Sbjct: 425 CAAVAALKPGKELHCHILKKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCW 484

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I+   Q G  + A  +F  M  S  K +   L+S + A         G+ +H  + +
Sbjct: 485 NSMISSFSQNGKPEIAIDLFRQMGMSGAKFDSVSLSSALSAAANLPALYYGKEMHGYVIR 544

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             F SDT V + L+ MY + G ++    VF  +  ++ VSWN++ + + ++  P + L +
Sbjct: 545 NAFSSDTFVASTLIDMYSKCGNLALAWCVFNLMDGKNEVSWNSIIAAYGNHGCPRECLDL 604

Query: 241 FYQMLLKGFKPNMCTFIVILKAC--SSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           +++ML  G  P+  TF+VI+ AC  + L D G     H  T ++ +         +VD+Y
Sbjct: 605 YHEMLRAGIHPDHVTFLVIISACGHAGLVDEGI-HYFHCMTREYGIGARMEHYACMVDLY 663

Query: 299 DKSGCLEDAGVAFDSL 314
            ++G + +   AFD++
Sbjct: 664 GRAGRVHE---AFDTI 676


>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 684

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 199/599 (33%), Positives = 327/599 (54%), Gaps = 7/599 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R+F  MPE +VVSWN ++   + +GD  +  + +  M  + +   K +L +V+     
Sbjct: 64  ARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWM--ILRSVIKPNLVSVISLLPI 121

Query: 64  SGYIKAGQV---VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           S  ++  ++   +H  ++++G         +LVD Y KCG      +VF    + + V+W
Sbjct: 122 SAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSW 181

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +II  L  +G C +A   F +M ++  +PN   ++S++    E    + G+ IH    +
Sbjct: 182 NSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMR 241

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G E+D  + N+L+ MY ++G  +  S +F  +  ++ VSWNA+ + +     P + +R 
Sbjct: 242 MGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRF 301

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
             QM   G  PN  TF  +L AC+ L  +G GK++HA  ++  L  +  V  SL+DMY K
Sbjct: 302 VIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAK 361

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            GCL  A   F++ + KD  +Y  +I  Y++  +   +L  F +MRL G K +  +    
Sbjct: 362 CGCLHSARNVFNT-SRKDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGV 420

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           ++ C+ +A L  G+ +H +A++      +FVS +L+  Y KCG ID A  +F     +D 
Sbjct: 421 ISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDV 480

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
           ASWN MI GY   G  E A+  F  M D+    D ++++ VLSACSH GL+E G ++FS 
Sbjct: 481 ASWNTMILGYGMIGELETAISMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSE 540

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +     + PT  H+ CM+D+LGRAG   E    I +  + P+A +W  LLGAC  +GN+E
Sbjct: 541 MLA-QRLEPTEMHYTCMVDLLGRAGFVEEAAKLIQQLPIAPDANIWGALLGACRIYGNVE 599

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           L  + AE L EL+P+    Y+  S+I A  GRW++ + +R L+ S+G KK P CSW+++
Sbjct: 600 LGRRAAEHLFELKPQHCGYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQI 658



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 128/421 (30%), Positives = 212/421 (50%), Gaps = 2/421 (0%)

Query: 57  VLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD 116
           VLK  ++S  I  G  VH +  +LG   D ++  +L+ +Y  CG  ++A ++F  + + D
Sbjct: 16  VLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERD 75

Query: 117 VVAWGAIITCLDQQGCCQEAAK-IFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH 175
           VV+W  II  L   G   EA    F ++  S +KPN   + SL+  +    D+     IH
Sbjct: 76  VVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIH 135

Query: 176 AVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD 235
               K G +S     NALV  Y + G V    +VF     ++ VSWN++ +         
Sbjct: 136 CYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCW 195

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
             L  F  M+  G +PN  T   IL     L     GK++H  +++   + +  +  SL+
Sbjct: 196 DALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLI 255

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
           DMY KSG   +A   F +L  +++ ++ A+I +YA       A++   +M+  G   N  
Sbjct: 256 DMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAV 315

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
           T  + L  C+ +  L  G+ +H++ V+ G   D+FVS +L+ MYAKCG +  A  VF  S
Sbjct: 316 TFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTS 375

Query: 416 ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
             +D  S+N++I GY +     ++L  F  M   G  PD ++FV V+SAC+++  +++GK
Sbjct: 376 R-KDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGK 434

Query: 476 K 476
           +
Sbjct: 435 E 435



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 146/332 (43%), Gaps = 42/332 (12%)

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M+ +G + +  TF  +LK CS   D+  G ++H    K   D +  VG +L+ +Y   G 
Sbjct: 1   MVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGF 60

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG-IKSNEFTLASCLN 362
           L DA   FD +  +D+ ++  II   +  G+   A   +  M L   IK N  ++ S L 
Sbjct: 61  LNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLP 120

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVST--ALVAMYAKCGSIDDAEAVFKGSALRDT 420
             + +      R +H  +VK G  LD  V+T  ALV  Y KCGS+     VF  +  ++ 
Sbjct: 121 ISAALEDEEMTRRIHCYSVKVG--LDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNE 178

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFS 479
            SWN +I G    G    AL AFRMM+D G  P+ +T   +L     +   + GK+ H  
Sbjct: 179 VSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGF 238

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTE-------------------IENF------- 513
           S++   G    I     +ID+  ++G  TE                   I N+       
Sbjct: 239 SMR--MGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPL 296

Query: 514 --------ITETKLTPNALVWENLLGACSWHG 537
                   + ET   PNA+ + N+L AC+  G
Sbjct: 297 EAIRFVIQMQETGECPNAVTFTNVLPACARLG 328



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 80/173 (46%), Gaps = 8/173 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +++A R+F  +   +V SWN ++ GY   G+ +  + +F +M+D   ++   S   VL  
Sbjct: 465 IDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRDDTVQYDLVSYIAVLSA 524

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            ++ G ++ G Q    M  +     +   +C +VD+  + G  + A K+  ++   PD  
Sbjct: 525 CSHGGLVERGWQYFSEMLAQRLEPTEMHYTC-MVDLLGRAGFVEEAAKLIQQLPIAPDAN 583

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQ---FVLTSLVRATTETGDQ 168
            WGA++      G  +   +    + E  +KP     ++L S + A T   D+
Sbjct: 584 IWGALLGACRIYGNVELGRRAAEHLFE--LKPQHCGYYILLSNIYAETGRWDE 634


>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 833

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 199/599 (33%), Positives = 327/599 (54%), Gaps = 7/599 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R+F  MPE +VVSWN ++   + +GD  +  + +  M  + +   K +L +V+     
Sbjct: 213 ARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWM--ILRSVIKPNLVSVISLLPI 270

Query: 64  SGYIKAGQV---VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           S  ++  ++   +H  ++++G         +LVD Y KCG      +VF    + + V+W
Sbjct: 271 SAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSW 330

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +II  L  +G C +A   F +M ++  +PN   ++S++    E    + G+ IH    +
Sbjct: 331 NSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMR 390

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G E+D  + N+L+ MY ++G  +  S +F  +  ++ VSWNA+ + +     P + +R 
Sbjct: 391 MGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRF 450

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
             QM   G  PN  TF  +L AC+ L  +G GK++HA  ++  L  +  V  SL+DMY K
Sbjct: 451 VIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAK 510

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            GCL  A   F++ + KD  +Y  +I  Y++  +   +L  F +MRL G K +  +    
Sbjct: 511 CGCLHSARNVFNT-SRKDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGV 569

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           ++ C+ +A L  G+ +H +A++      +FVS +L+  Y KCG ID A  +F     +D 
Sbjct: 570 ISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDV 629

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
           ASWN MI GY   G  E A+  F  M D+    D ++++ VLSACSH GL+E G ++FS 
Sbjct: 630 ASWNTMILGYGMIGELETAISMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSE 689

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +     + PT  H+ CM+D+LGRAG   E    I +  + P+A +W  LLGAC  +GN+E
Sbjct: 690 MLA-QRLEPTEMHYTCMVDLLGRAGFVEEAAKLIQQLPIAPDANIWGALLGACRIYGNVE 748

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           L  + AE L EL+P+    Y+  S+I A  GRW++ + +R L+ S+G KK P CSW+++
Sbjct: 749 LGRRAAEHLFELKPQHCGYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQI 807



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 133/460 (28%), Positives = 225/460 (48%), Gaps = 3/460 (0%)

Query: 19  WNALLNGYAESGDGQ-KVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMA 77
           WN L+  ++ + +G       +  M     +    +   VLK  ++S  I  G  VH + 
Sbjct: 126 WNTLIRAHSIAWNGTFDGFETYNRMVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVV 185

Query: 78  IRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAA 137
            +LG   D ++  +L+ +Y  CG  ++A ++F  + + DVV+W  II  L   G   EA 
Sbjct: 186 FKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEAR 245

Query: 138 K-IFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSM 196
              F ++  S +KPN   + SL+  +    D+     IH    K G +S     NALV  
Sbjct: 246 NYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDA 305

Query: 197 YMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTF 256
           Y + G V    +VF     ++ VSWN++ +           L  F  M+  G +PN  T 
Sbjct: 306 YGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTI 365

Query: 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
             IL     L     GK++H  +++   + +  +  SL+DMY KSG   +A   F +L  
Sbjct: 366 SSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDR 425

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL 376
           +++ ++ A+I +YA       A++   +M+  G   N  T  + L  C+ +  L  G+ +
Sbjct: 426 RNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEI 485

Query: 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
           H++ V+ G   D+FVS +L+ MYAKCG +  A  VF  S  +D  S+N++I GY +    
Sbjct: 486 HAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTSR-KDEVSYNILIIGYSETDDC 544

Query: 437 EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            ++L  F  M   G  PD ++FV V+SAC+++  +++GK+
Sbjct: 545 LQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKE 584



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 183/382 (47%), Gaps = 2/382 (0%)

Query: 138 KIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMY 197
           + +N M    V+ +      +++  +++ D   G  +H V+ K GF++D  VGN L+ +Y
Sbjct: 145 ETYNRMVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLY 204

Query: 198 MENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG-FKPNMCTF 256
              G ++   R+F+ +  +D VSWN +           +    ++ M+L+   KPN+ + 
Sbjct: 205 GNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSV 264

Query: 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
           I +L   ++L D    +++H +++K  LD       +LVD Y K G ++     F+    
Sbjct: 265 ISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVE 324

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL 376
           K+  ++ +II   A  G    AL  FR M   G + N  T++S L     +     G+ +
Sbjct: 325 KNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEI 384

Query: 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
           H  +++ G   D+F++ +L+ MYAK G   +A  +F     R+  SWN MI  Y  + L 
Sbjct: 385 HGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLP 444

Query: 437 EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFAC 496
            +A+     M + G  P+ +TF  VL AC+ +G +  GK+  +   +I G+T  +     
Sbjct: 445 LEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRI-GLTSDLFVSNS 503

Query: 497 MIDILGRAGKFTEIENFITETK 518
           +ID+  + G      N    ++
Sbjct: 504 LIDMYAKCGCLHSARNVFNTSR 525



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 167/384 (43%), Gaps = 55/384 (14%)

Query: 192 ALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKP 251
           +L +   +N R ++   ++  +    S++WN  F  F+ Y           +M+ +G + 
Sbjct: 111 SLFNQTFQNCRTAF---LWNTLIRAHSIAWNGTFDGFETYN----------RMVRRGVQL 157

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF 311
           +  TF  +LK CS   D+  G ++H    K   D +  VG +L+ +Y   G L DA   F
Sbjct: 158 DDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLF 217

Query: 312 DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG-IKSNEFTLASCLNGCSPVATL 370
           D +  +D+ ++  II   +  G+   A   +  M L   IK N  ++ S L   + +   
Sbjct: 218 DEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDE 277

Query: 371 ANGRLLHSIAVKTGHLLDMFVST--ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
              R +H  +VK G  LD  V+T  ALV  Y KCGS+     VF  +  ++  SWN +I 
Sbjct: 278 EMTRRIHCYSVKVG--LDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIIN 335

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGI 487
           G    G    AL AFRMM+D G  P+ +T   +L     +   + GK+ H  S++   G 
Sbjct: 336 GLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRM--GT 393

Query: 488 TPTIKHFACMIDILGRAGKFTE-------------------IENF--------------- 513
              I     +ID+  ++G  TE                   I N+               
Sbjct: 394 ETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQ 453

Query: 514 ITETKLTPNALVWENLLGACSWHG 537
           + ET   PNA+ + N+L AC+  G
Sbjct: 454 MQETGECPNAVTFTNVLPACARLG 477



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 118/289 (40%), Gaps = 13/289 (4%)

Query: 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGTSLVDMYDKSGCLEDAGVAFDSLA 315
           I +L  CS +  +   KQ+HA  I +      V +  SL+  Y K    +  G +F SL 
Sbjct: 58  INLLTLCSKVQSLLQTKQVHALGILNGFLPRSVSLCASLILNYAK---FQHPG-SFCSLF 113

Query: 316 NKDL------FAYTAIITSYAQAGEAEM-ALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
           N+        F +  +I +++ A        + + +M   G++ ++ T    L  CS   
Sbjct: 114 NQTFQNCRTAFLWNTLIRAHSIAWNGTFDGFETYNRMVRRGVQLDDHTFPFVLKLCSDSF 173

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
            +  G  +H +  K G   D++V   L+ +Y  CG ++DA  +F     RD  SWN +IG
Sbjct: 174 DICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIG 233

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGIT 488
               +G   +A   +  M+    +   +  V+ L   S     EE  +         G+ 
Sbjct: 234 LLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLD 293

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
             +     ++D  G+ G    +     ET +  N + W +++   +  G
Sbjct: 294 SQVTTCNALVDAYGKCGSVKALWQVFNET-VEKNEVSWNSIINGLACKG 341



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 63/126 (50%), Gaps = 3/126 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +++A R+F  +   +V SWN ++ GY   G+ +  + +F +M+D   ++   S   VL  
Sbjct: 614 IDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRDDTVQYDLVSYIAVLSA 673

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            ++ G ++ G Q    M  +     +   +C +VD+  + G  + A K+  ++   PD  
Sbjct: 674 CSHGGLVERGWQYFSEMLAQRLEPTEMHYTC-MVDLLGRAGFVEEAAKLIQQLPIAPDAN 732

Query: 119 AWGAII 124
            WGA++
Sbjct: 733 IWGALL 738


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 200/597 (33%), Positives = 331/597 (55%), Gaps = 2/597 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF  MP  +V +WN++++ Y+ S    +   +F  M+   ++  + +  ++L    N
Sbjct: 214 ARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVN 273

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ G+ V          LD F+  +L+ MY++C   ++A +VF R+K  +++ W AI
Sbjct: 274 PETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAI 333

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRA-TTETGDQRCGESIHAVICKYG 182
           IT     G C EA + F +M++  + PN+    SL+   TT +G +     IH +I ++G
Sbjct: 334 ITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSR-IHLLITEHG 392

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            +  T + NALV++Y           VF+ +   + +SWN++   +   E  D  L++F 
Sbjct: 393 LDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFR 452

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            M  +G +P+   F+ IL AC+  S     K +H    +  L G+ +V TSLV+MY K+G
Sbjct: 453 TMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAG 512

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            L+ A V    +  + + A+  +I  YA  G +  AL+ ++K++LE I  ++ T  S LN
Sbjct: 513 ELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLN 572

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+   +LA G+++HS AV+ G   D+ V  AL  MY+KCGS+++A  +F    +R   S
Sbjct: 573 ACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVS 632

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN M+  Y +HG  E+ L+  R M  EG   + ITFV VLS+CSH GLI EG ++F S+ 
Sbjct: 633 WNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLG 692

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
              GI    +H+ C++D+LGRAGK  E E +I++  L P  + W +LLGAC    +++  
Sbjct: 693 HDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLEPGIVTWASLLGACRVQKDLDRG 752

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +  A KLLEL+P   S  V  S+I + +G W + + +R  ++S+ +KK P  S I+V
Sbjct: 753 KLAAGKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQV 809



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 159/564 (28%), Positives = 273/564 (48%), Gaps = 8/564 (1%)

Query: 8   FKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYI 67
           F  +   NVVSWN +++ Y+     Q+ + LF +M       +  +L  VL    +   +
Sbjct: 15  FGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITLVAVLNSCGSFREL 74

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127
           + G +VHA+++  G   +  ++ +L++MY KCG   +A  VF  + + +VV W A++   
Sbjct: 75  RDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGVY 134

Query: 128 DQQGCCQE-AAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             QGCC + A ++F  M    VK N     +++ +  +    R G+ IH+ + +     D
Sbjct: 135 SLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLD 194

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             V  ALV+ Y + G ++   +VF+ +  +   +WN++ S +   E   +   IF +M  
Sbjct: 195 VFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQ 254

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           +G + +  TF+ IL AC +   +  GK +     + S + +  VGT+L+ MY +    ED
Sbjct: 255 EGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPED 314

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A   F  +   +L  ++AIIT++A  G    AL+ FR M+ EGI  N  T  S LNG + 
Sbjct: 315 AAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTT 374

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
            + L     +H +  + G      +  ALV +Y +C S DDA  VF    L +  SWN M
Sbjct: 375 PSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSM 434

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK--HFSSIKKI 484
           IG YV+    + AL+ FR M  +G  PD + F+ +L AC+ +G     +K  H    +  
Sbjct: 435 IGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACT-IGSHGRTRKLVHQCVEESG 493

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEK 544
            G +P ++    ++++  +AG+    E  + E         W  L+   + HG    +  
Sbjct: 494 LGGSPLVQ--TSLVNMYAKAGELDVAEVILQEMD-EQQITAWNVLINGYALHGR-SREAL 549

Query: 545 DAEKLLELEPKMESNYVFPSDISA 568
           +A + L+LE        F S ++A
Sbjct: 550 EAYQKLQLEAIPVDKVTFISVLNA 573



 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 155/559 (27%), Positives = 274/559 (49%), Gaps = 10/559 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKV-MHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           A+ VF+ M E NVV+WNA+L  Y+  G   K+ + LF  M     K +  +   VL    
Sbjct: 112 AQSVFEEMAEKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVV 171

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           +   ++ G+ +H+       +LD F++ +LV+ Y+KCG   +A KVF  +    V  W +
Sbjct: 172 DPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNS 231

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I+         EA  IF  M++   + ++    S++ A       + G+ +   I +  
Sbjct: 232 MISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETS 291

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           FE D  VG AL++MY         ++VF  +   + ++W+A+ + F D+    + LR F 
Sbjct: 292 FELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFR 351

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            M  +G  PN  TFI +L   ++ S +    ++H    +H LD    +  +LV++Y +  
Sbjct: 352 MMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCE 411

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
             +DA   FD L   +L ++ ++I  Y Q    + AL+ FR M+ +GI+ +     + L 
Sbjct: 412 SPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILG 471

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+  +     +L+H    ++G      V T+LV MYAK G +D AE + +    +   +
Sbjct: 472 ACTIGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITA 531

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN++I GY  HG   +ALEA++ +  E    D++TF+ VL+AC+    + EGK   S+  
Sbjct: 532 WNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAV 591

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           +  G+   +     + ++  + G   E    I ++    +A+ W  +L A + HG     
Sbjct: 592 EC-GLDSDVIVKNALTNMYSKCGSM-ENARRIFDSMPIRSAVSWNGMLQAYAQHG----- 644

Query: 543 EKDAEKLLELEPKMESNYV 561
             ++E++L+L  KME   V
Sbjct: 645 --ESEEVLKLIRKMEQEGV 661



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 134/446 (30%), Positives = 231/446 (51%), Gaps = 19/446 (4%)

Query: 95  MYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFV 154
           MYS+CG   +A+  F +I+  +VV+W  +I+        QEA  +F+ M    V PN   
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 155 LTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA 214
           L +++ +     + R G  +HA+  + GF  +TLV  AL++MY + G +     VFE +A
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMA 120

Query: 215 HQDSVSWNALFSRFQDYESPDQG------LRIFYQMLLKGFKPNMCTFIVILKACSSLSD 268
            ++ V+WNA+   +       QG      + +F +MLL+G K N+ TF+ +L +      
Sbjct: 121 EKNVVTWNAMLGVYS-----LQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDA 175

Query: 269 VGFGKQLHA--HTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
           +  GK +H+     +HSLD    V T+LV+ Y K G L DA   FD +  + +  + ++I
Sbjct: 176 LRKGKFIHSCVRESEHSLDV--FVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMI 233

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL 386
           ++Y+ +  +  A   F++M+ EG + +  T  S L+ C    TL +G+ +     +T   
Sbjct: 234 SAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFE 293

Query: 387 LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM 446
           LD+FV TAL+ MYA+C S +DA  VF      +  +W+ +I  +  HG   +AL  FRMM
Sbjct: 294 LDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMM 353

Query: 447 LDEGYVPDEITFVVVLSA-CSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAG 505
             EG +P+ +TF+ +L+   +  GL E  + H   +   +G+  T      ++++ GR  
Sbjct: 354 QQEGILPNRVTFISLLNGFTTPSGLEELSRIHL--LITEHGLDDTTTMRNALVNVYGRCE 411

Query: 506 KFTEIENFITETKLTPNALVWENLLG 531
              +      + +L PN + W +++G
Sbjct: 412 SPDDARTVFDQLEL-PNLISWNSMIG 436



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 118/459 (25%), Positives = 226/459 (49%), Gaps = 16/459 (3%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E A +VF  M + N+++W+A++  +A+ G   + +  F  M+      ++ +  ++L GF
Sbjct: 313 EDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGF 372

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
                ++    +H +    G      +  +LV++Y +C   D+A  VF +++ P++++W 
Sbjct: 373 TTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWN 432

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           ++I    Q     +A ++F  M++  ++P++    +++ A T     R  + +H  + + 
Sbjct: 433 SMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEES 492

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G     LV  +LV+MY + G +     + + +  Q   +WN L + +  +    + L  +
Sbjct: 493 GLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAY 552

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            ++ L+    +  TFI +L AC+S + +  GK +H++ ++  LD + +V  +L +MY K 
Sbjct: 553 QKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKC 612

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G +E+A   FDS+  +   ++  ++ +YAQ GE+E  LK  RKM  EG+K N  T  S L
Sbjct: 613 GSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVL 672

Query: 362 NGCSPVATLANG-RLLHS------IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
           + CS    +A G +  HS      I VKT H         LV +  + G + +AE     
Sbjct: 673 SSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHY------GCLVDLLGRAGKLQEAEKYISK 726

Query: 415 SALRD-TASWNMMIGG-YVKHGLGEKALEAFRMM-LDEG 450
             L     +W  ++G   V+  L    L A +++ LD G
Sbjct: 727 MPLEPGIVTWASLLGACRVQKDLDRGKLAAGKLLELDPG 765



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 110/239 (46%), Gaps = 2/239 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +++A+ + + M E  + +WN L+NGYA  G  ++ +  +  ++       K +  +VL  
Sbjct: 514 LDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNA 573

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +S  +  G+++H+ A+  G   D  +  +L +MYSKCG  +NA ++F  +     V+W
Sbjct: 574 CTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSW 633

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG-ESIHAVIC 179
             ++    Q G  +E  K+   M +  VK N     S++ + +  G    G +  H++  
Sbjct: 634 NGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGH 693

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDS-VSWNALFSRFQDYESPDQG 237
             G E  T     LV +    G++    +    +  +   V+W +L    +  +  D+G
Sbjct: 694 DRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLEPGIVTWASLLGACRVQKDLDRG 752


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 206/604 (34%), Positives = 333/604 (55%), Gaps = 15/604 (2%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMH---LFCSMKDMEKKFSKFSLSTVLK 59
           LA+  F  +   +V +WN +++GY  +G   +V+    LF     ++  +  F   +VLK
Sbjct: 104 LARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFP--SVLK 161

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
              N   +  G  +H +A++ G   D +++ SL+ +Y + G   NA  +F  +   D+ +
Sbjct: 162 ACRN---VTDGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGS 218

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W A+I+   Q G  +EA  + + +R      +   + SL+ A TE GD   G +IH+   
Sbjct: 219 WNAMISGYCQSGNAKEALTLSDGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSI 274

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K+G ES+  V N L+ +Y E G +    +VF+ +  +D +SWN++   ++  E P + + 
Sbjct: 275 KHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAIL 334

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGTSLVDMY 298
           +F +M L   +P+  T I +    S L ++   + +   T++       + +G ++V MY
Sbjct: 335 LFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMY 394

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG--IKSNEFT 356
            K G ++ A   F+ L NKD+ ++  II+ YAQ G A  A++ +  M  EG  I +N+ T
Sbjct: 395 AKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGT 454

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
             S L  CS    L  G  LH   +K G  LD+FV T+L  MY KCG +DDA ++F    
Sbjct: 455 WVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIP 514

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
             ++  WN +I  +  HG GEKA+  F+ MLDEG  PD ITFV +LSACSH GL++EG+ 
Sbjct: 515 RVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEW 574

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
            F  ++  YGITP++KH+ CM+D+ GRAG+     NFI    L P+A +W  LL AC  H
Sbjct: 575 CFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVH 634

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSW 596
           GN++L +  +E L E+EP+    +V  S++ A+ G+W     +R++ S +G++K P  S 
Sbjct: 635 GNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSS 694

Query: 597 IEVD 600
           +EVD
Sbjct: 695 MEVD 698



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 138/506 (27%), Positives = 241/506 (47%), Gaps = 22/506 (4%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +++ + +HA  +      +  +S  LV++Y   G    A   F  I + DV AW  +I+ 
Sbjct: 67  LQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISG 126

Query: 127 LDQQGCCQEAAKIFNL-MRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
             + G   E  + F+L M  S ++P+     S+++A     D   G  IH +  K+GF  
Sbjct: 127 YGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTD---GNKIHCLALKFGFMW 183

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           D  V  +L+ +Y   G V     +F+ +  +D  SWNA+ S +    +  + L      L
Sbjct: 184 DVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEAL-----TL 238

Query: 246 LKGFKP-NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
             G +  +  T + +L AC+   D   G  +H+++IKH L+    V   L+D+Y + G L
Sbjct: 239 SDGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSL 298

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
           +D    FD +  +DL ++ +II +Y    +   A+  F++MRL  I+ +  TL S  +  
Sbjct: 299 KDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASIL 358

Query: 365 SPVATLANGRLLHSIAVKTGHLL-DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           S +  +   R +    ++ G  L D+ +  A+V MYAK G +D A AVF     +D  SW
Sbjct: 359 SQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISW 418

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEG--YVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           N +I GY ++G   +A+E + +M +EG     ++ T+V VL ACS  G + +G K    +
Sbjct: 419 NTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRL 478

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
            K  G+   +     + D+ G+ G+  +  +   +     N++ W  L+    +HG+   
Sbjct: 479 LK-NGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRV-NSVPWNTLIACHGFHGH--- 533

Query: 542 DEKDAEKLLELEPKMESNYVFPSDIS 567
                EK + L  +M    V P  I+
Sbjct: 534 ----GEKAVMLFKEMLDEGVKPDHIT 555



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 143/297 (48%), Gaps = 27/297 (9%)

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKD 318
           + + C++L      K LHA  +  +   N  +   LV++Y   G +  A   FD + N+D
Sbjct: 60  LFRYCTNLQS---AKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRD 116

Query: 319 LFAYTAIITSYAQAGEAEMALKCFRKMRL-EGIKSNEFTLASCLNGCSPVATLANGRLLH 377
           ++A+  +I+ Y +AG +   ++CF    L  G++ +  T  S L  C  V    +G  +H
Sbjct: 117 VYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNV---TDGNKIH 173

Query: 378 SIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGE 437
            +A+K G + D++V+ +L+ +Y + G++ +A  +F     RD  SWN MI GY + G  +
Sbjct: 174 CLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAK 233

Query: 438 KAL---EAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKH 493
           +AL   +  R M       D +T V +LSAC+  G    G   H  SIK  +G+   +  
Sbjct: 234 EALTLSDGLRAM-------DSVTVVSLLSACTEAGDFNRGVTIHSYSIK--HGLESELFV 284

Query: 494 FACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLL 550
              +ID+    G   + +  + +     + + W +++ A       EL+E+    +L
Sbjct: 285 SNKLIDLYAEFGSLKDCQK-VFDRMYVRDLISWNSIIKA------YELNEQPLRAIL 334


>gi|357126882|ref|XP_003565116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Brachypodium distachyon]
          Length = 796

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 194/608 (31%), Positives = 348/608 (57%), Gaps = 15/608 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFC-SMKDMEKKFSKFSLSTVLKGFA 62
           A+R+   MP  N VS+N L++ Y+ +G  ++ +  F  + +  E K  +F+ +  L   +
Sbjct: 66  ARRLLDEMPRRNAVSFNLLIDAYSRAGQTEESLETFLHAHRAAEVKADRFTYAAALAACS 125

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
            +G +K G+VVHA+A+  G A   F+S SLV MY++CG    A +VF   ++ D V+W +
Sbjct: 126 RAGRLKEGKVVHALAVLEGLAEGVFVSNSLVSMYARCGDMGEARRVFDVTEERDDVSWNS 185

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD---QRCGESIHAVIC 179
           +++   + G  +E  ++F LMR  ++  N F L S+++  +  GD   +   E++H  + 
Sbjct: 186 LVSGYLRVGAHEEMLRVFALMRRCAMGLNSFALGSVIKCCS-GGDGSVRGIAEAVHGCVV 244

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP----- 234
           K G ++D  + +A+V MY + G +S    +F+++   + V +NA+ +     E+      
Sbjct: 245 KAGLDTDLFLASAMVDMYAKRGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVHKEV 304

Query: 235 -DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
             + L ++ ++  +G +P   TF  +++AC+   D+ FGKQ+H   +KH   G+  +G++
Sbjct: 305 VREALSLYSELQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSA 364

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           L+D+Y  S C+ED    F S+  +D+  +TA+I+   Q    E AL  F ++   G+K +
Sbjct: 365 LIDLYFNSACMEDGFRCFRSVPKQDVVTWTAMISGCVQNELFERALALFHELLGVGLKPD 424

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS--TALVAMYAKCGSIDDAEAV 411
            FT++S +N C+ +A +  G  +   A K+G   D F +   + + MYA+ G+++ A   
Sbjct: 425 PFTISSVMNACASLAVVRTGEQMQCFATKSG--FDRFTAMGNSCIHMYARSGNVEAAIQR 482

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F+     D  SW+ +I  + +HG   +AL+ F  M+    VP+EITF+ VL+ACSH GL+
Sbjct: 483 FQEMESHDVVSWSAIISSHAQHGCARQALQFFNEMVGAKVVPNEITFLGVLTACSHGGLV 542

Query: 472 EEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLG 531
           +EG +++  +K  YG+ PT+KH  C++D+LGRAG+  + E FI ++      +VW++LLG
Sbjct: 543 DEGLRYYEIMKMEYGLCPTVKHCTCVVDLLGRAGRLADAEAFIRDSIFHDEPVVWQSLLG 602

Query: 532 ACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
           +C  H ++E  +  A++++EL+P     YV   ++    G  +  S +R L+  +G+KKE
Sbjct: 603 SCRIHRDMERGQLVADRIMELQPASSGCYVNLYNMYLDAGELSLGSKIRDLMKERGVKKE 662

Query: 592 PSCSWIEV 599
           P  SWIE+
Sbjct: 663 PGLSWIEL 670



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 122/241 (50%), Gaps = 6/241 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME   R F+S+P+ +VV+W A+++G  ++   ++ + LF  +  +  K   F++S+V+  
Sbjct: 375 MEDGFRCFRSVPKQDVVTWTAMISGCVQNELFERALALFHELLGVGLKPDPFTISSVMNA 434

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKF--LSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
            A+   ++ G+ +   A + G   D+F  +  S + MY++ G  + A++ F  ++  DVV
Sbjct: 435 CASLAVVRTGEQMQCFATKSG--FDRFTAMGNSCIHMYARSGNVEAAIQRFQEMESHDVV 492

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +W AII+   Q GC ++A + FN M  + V PN+     ++ A +  G    G   + ++
Sbjct: 493 SWSAIISSHAQHGCARQALQFFNEMVGAKVVPNEITFLGVLTACSHGGLVDEGLRYYEIM 552

Query: 179 -CKYGFESDTLVGNALVSMYMENGRVSYGSR-VFEAIAHQDSVSWNALFSRFQDYESPDQ 236
             +YG          +V +    GR++     + ++I H + V W +L    + +   ++
Sbjct: 553 KMEYGLCPTVKHCTCVVDLLGRAGRLADAEAFIRDSIFHDEPVVWQSLLGSCRIHRDMER 612

Query: 237 G 237
           G
Sbjct: 613 G 613



 Score = 43.1 bits (100), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 5/166 (3%)

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA--VFKGSALRDTASWNM 425
           A+L     +H    +      +F+   L+A Y + G+ D  +A  +      R+  S+N+
Sbjct: 24  ASLPQAAAVHGHIARAHPSPSLFLRNTLLAAYCRLGAGDTHQARRLLDEMPRRNAVSFNL 83

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYV-PDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
           +I  Y + G  E++LE F        V  D  T+   L+ACS  G ++EGK    ++  +
Sbjct: 84  LIDAYSRAGQTEESLETFLHAHRAAEVKADRFTYAAALAACSRAGRLKEGKV-VHALAVL 142

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
            G+   +     ++ +  R G   E       T+   + + W +L+
Sbjct: 143 EGLAEGVFVSNSLVSMYARCGDMGEARRVFDVTE-ERDDVSWNSLV 187


>gi|307136370|gb|ADN34182.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
           melo]
          Length = 1131

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 208/601 (34%), Positives = 330/601 (54%), Gaps = 4/601 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ AK+VF S+ E N+V WNA+L G+A++G  Q+VM  F  MK    +  +F+ +++   
Sbjct: 360 MDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSA 419

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+  Y+  G  +H + I+     + F++ +LVDMY+K G    A K F  +K  D V+W
Sbjct: 420 CASLHYLDFGGQLHTVMIKNKFTSNLFVANALVDMYAKSGALKEARKQFEFMKIHDNVSW 479

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            AII    Q+    EA  +F  M  + V P++  L S+V A     + + G+  H ++ K
Sbjct: 480 NAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVKEFKQGQQCHCLLVK 539

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G ++ T  G++L+ MY++ G V     VF ++ +++ VS NAL + +      ++ + +
Sbjct: 540 VGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPYRNVVSINALIAGYT-MSHLEEAIHL 598

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS-LDGNHVVGTSLVDMYD 299
           F ++ + G KP   TF  +L  C     +  G+Q+H   +K   L  + +V  SL+ MY 
Sbjct: 599 FQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCMYM 658

Query: 300 KSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            S    D+   F  L   K L  +TA+I+ YAQ    E AL+ ++ MR + I  ++ T A
Sbjct: 659 NSQRFADSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQATFA 718

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L  C+ +++L  G+ +HS+   TG  +D    ++L+ MYAKCG +  +  VF     R
Sbjct: 719 SVLRACAGMSSLQTGQEVHSLIFHTGFNMDEITCSSLIDMYAKCGDVKGSLQVFHEMPRR 778

Query: 419 DTA-SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           ++  SWN MI G  K+G  E+ALE F+ M  +  +PDE+TF+ VLSACSH G + EG+K 
Sbjct: 779 NSVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHAGRVSEGRKV 838

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F  +   Y + P + H  CM+DILGR G   E E FI +     + ++W  LLGAC  HG
Sbjct: 839 FDLMVNNYKLQPRVDHLGCMVDILGRWGFLNEAEEFINKLGCKADPMLWSTLLGACRKHG 898

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           +    ++ A KL+EL+P+  S+YV  S + A    W+    +R  +  +G+KK P  SWI
Sbjct: 899 DEVRGKRAANKLMELKPQSSSSYVLLSGLYAESENWSGADSLRREMKLKGVKKLPGYSWI 958

Query: 598 E 598
           E
Sbjct: 959 E 959



 Score =  265 bits (677), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 161/568 (28%), Positives = 284/568 (50%), Gaps = 15/568 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F  +P  NVV+WN +++G+A+ G  ++ +  F  +K    K ++ SL +VL   A+
Sbjct: 262 ARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIAS 321

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G +VHA AI+ G   + ++  +LV+MY+KC   D A +VF  + + ++V W A+
Sbjct: 322 LSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAM 381

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    Q G  QE  + F+ M+    +P++F  TS+  A         G  +H V+ K  F
Sbjct: 382 LGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHYLDFGGQLHTVMIKNKF 441

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            S+  V NALV MY ++G +    + FE +   D+VSWNA+   +   E  D+   +F +
Sbjct: 442 TSNLFVANALVDMYAKSGALKEARKQFEFMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRR 501

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M+  G  P+  +   I+ AC+++ +   G+Q H   +K  LD +   G+SL+DMY K G 
Sbjct: 502 MVSNGVLPDEVSLASIVSACANVKEFKQGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGV 561

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +  A   F S+  +++ +  A+I  Y  +   E A+  F+++++ G+K  E T A  L+G
Sbjct: 562 VLAARDVFYSMPYRNVVSINALIAGYTMS-HLEEAIHLFQEIQMVGLKPTEVTFAGLLDG 620

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDM-FVSTALVAMYAKCGSIDDAEAVFKG-SALRDTA 421
           C     L  GR +H   +K G L     V  +L+ MY       D+E +F      +   
Sbjct: 621 CDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCMYMNSQRFADSETLFSELQYPKGLV 680

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
            W  +I GY +    EKAL+ ++ M  +  +PD+ TF  VL AC+ M  ++ G++  S  
Sbjct: 681 VWTALISGYAQQNHHEKALQFYQHMRSDNILPDQATFASVLRACAGMSSLQTGQEVHS-- 738

Query: 482 KKIYGITPTIKHFAC--MIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
             I+     +    C  +ID+  + G          E     + + W +++   + +G  
Sbjct: 739 -LIFHTGFNMDEITCSSLIDMYAKCGDVKGSLQVFHEMPRRNSVISWNSMIVGLAKNGY- 796

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDIS 567
                 AE+ LE+  +ME   + P +++
Sbjct: 797 ------AEEALEIFKQMEQQSIIPDEVT 818



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 134/505 (26%), Positives = 249/505 (49%), Gaps = 36/505 (7%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A++ F  + + +V +WN++L+ Y + G    V+  F  M +   + ++F+ + VL  
Sbjct: 92  VDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNHGVRPNEFTFAMVLSA 151

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    I  G+ VH    ++G     F    L+DMY+KC    +A  VF    + D V+W
Sbjct: 152 CSGLQDINYGKQVHCGVFKMGFGFRSFCQGGLIDMYAKCRNLRDARLVFDGALNLDTVSW 211

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I    + G   EA K+F+ M+     P+Q  L +++ A                   
Sbjct: 212 TTLIAGYVRDGFPMEAVKVFDKMQRVGHVPDQIALVTVINA------------------- 252

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
                           Y+  GR++   ++F  I + + V+WN + S        ++ +  
Sbjct: 253 ----------------YVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISF 296

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F ++   G K    +   +L A +SLS + +G  +HA  IK  LD N  VG++LV+MY K
Sbjct: 297 FLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAK 356

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
              ++ A   F+SL  +++  + A++  +AQ G A+  ++ F  M+  G + +EFT  S 
Sbjct: 357 CSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSI 416

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
            + C+ +  L  G  LH++ +K     ++FV+ ALV MYAK G++ +A   F+   + D 
Sbjct: 417 FSACASLHYLDFGGQLHTVMIKNKFTSNLFVANALVDMYAKSGALKEARKQFEFMKIHDN 476

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SWN +I GYV+    ++A   FR M+  G +PDE++   ++SAC+++   ++G++    
Sbjct: 477 VSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVKEFKQGQQCHCL 536

Query: 481 IKKIYGITPTIKHFACMIDILGRAG 505
           + K+ G+  +    + +ID+  + G
Sbjct: 537 LVKV-GLDTSTCAGSSLIDMYVKCG 560



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 148/560 (26%), Positives = 252/560 (45%), Gaps = 43/560 (7%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF     L+ VSW  L+ GY   G   + + +F  M+                    
Sbjct: 196 ARLVFDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQ-------------------- 235

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                          R+G   D+    ++++ Y   G   +A K+F +I +P+VVAW  +
Sbjct: 236 ---------------RVGHVPDQIALVTVINAYVALGRLADARKLFTQIPNPNVVAWNVM 280

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   ++G  +EA   F  ++++ +K  +  L S++ A         G  +HA   K G 
Sbjct: 281 ISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQAIKEGL 340

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           + +  VG+ALV+MY +  ++    +VF ++  ++ V WNA+   F       + +  F  
Sbjct: 341 DDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSY 400

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G +P+  TF  I  AC+SL  + FG QLH   IK+    N  V  +LVDMY KSG 
Sbjct: 401 MKRHGPQPDEFTFTSIFSACASLHYLDFGGQLHTVMIKNKFTSNLFVANALVDMYAKSGA 460

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L++A   F+ +   D  ++ AII  Y Q    + A   FR+M   G+  +E +LAS ++ 
Sbjct: 461 LKEARKQFEFMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSA 520

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ V     G+  H + VK G        ++L+ MY KCG +  A  VF     R+  S 
Sbjct: 521 CANVKEFKQGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPYRNVVSI 580

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I GY    L E+A+  F+ +   G  P E+TF  +L  C    ++  G++    + K
Sbjct: 581 NALIAGYTMSHL-EEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMK 639

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
              ++ +      ++ +   + +F + E   +E +     +VW  L+   +        +
Sbjct: 640 WGFLSSSEMVCVSLLCMYMNSQRFADSETLFSELQYPKGLVVWTALISGYA-------QQ 692

Query: 544 KDAEKLLELEPKMESNYVFP 563
              EK L+    M S+ + P
Sbjct: 693 NHHEKALQFYQHMRSDNILP 712



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 129/504 (25%), Positives = 233/504 (46%), Gaps = 50/504 (9%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +   +V+H+ ++++G  L   L   +VD+Y KCG  D A K F R++  DV AW ++++ 
Sbjct: 57  LSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSM 116

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
               G      + F  M    V+PN+F    ++ A +   D   G+ +H  + K GF   
Sbjct: 117 YLDHGLFATVVQSFVCMWNHGVRPNEFTFAMVLSACSGLQDINYGKQVHCGVFKMGFGFR 176

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
           +     L+ MY +   +     VF+   + D+VSW  L + +     P + +++F +M  
Sbjct: 177 SFCQGGLIDMYAKCRNLRDARLVFDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQR 236

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
            G  P+    + ++ A  +L                                   G L D
Sbjct: 237 VGHVPDQIALVTVINAYVAL-----------------------------------GRLAD 261

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A   F  + N ++ A+  +I+ +A+ G AE A+  F +++  G+K+   +L S L+  + 
Sbjct: 262 ARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIAS 321

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           ++ L  G ++H+ A+K G   +++V +ALV MYAKC  +D A+ VF     R+   WN M
Sbjct: 322 LSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAM 381

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE-EGKKHFSSIKKIY 485
           +GG+ ++GL ++ +E F  M   G  PDE TF  + SAC+ +  ++  G+ H   IK  +
Sbjct: 382 LGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHYLDFGGQLHTVMIKNKF 441

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI--ELDE 543
             T  +     ++D+  ++G   E        K+  N           SW+  I   + E
Sbjct: 442 --TSNLFVANALVDMYAKSGALKEARKQFEFMKIHDNV----------SWNAIIVGYVQE 489

Query: 544 KDAEKLLELEPKMESNYVFPSDIS 567
           +  ++   +  +M SN V P ++S
Sbjct: 490 EYNDEAFFMFRRMVSNGVLPDEVS 513



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 131/260 (50%), Gaps = 5/260 (1%)

Query: 261 KACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLF 320
           K  + L  +   K +H+ ++K  +    ++G  +VD+Y K G ++ A  AF  L  KD+F
Sbjct: 49  KPKAVLQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVF 108

Query: 321 AYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIA 380
           A+ ++++ Y   G     ++ F  M   G++ NEFT A  L+ CS +  +  G+ +H   
Sbjct: 109 AWNSVLSMYLDHGLFATVVQSFVCMWNHGVRPNEFTFAMVLSACSGLQDINYGKQVHCGV 168

Query: 381 VKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKAL 440
            K G     F    L+ MYAKC ++ DA  VF G+   DT SW  +I GYV+ G   +A+
Sbjct: 169 FKMGFGFRSFCQGGLIDMYAKCRNLRDARLVFDGALNLDTVSWTTLIAGYVRDGFPMEAV 228

Query: 441 EAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDI 500
           + F  M   G+VPD+I  V V++A   +G + + +K F+ I       P +  +  MI  
Sbjct: 229 KVFDKMQRVGHVPDQIALVTVINAYVALGRLADARKLFTQIP-----NPNVVAWNVMISG 283

Query: 501 LGRAGKFTEIENFITETKLT 520
             + G   E  +F  E K T
Sbjct: 284 HAKRGFAEEAISFFLELKKT 303


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 192/596 (32%), Positives = 329/596 (55%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A RVF+ + +     ++ +L GYA++   +  +   C M+  + K   ++ + +LK   +
Sbjct: 100 AARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGD 159

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +  +K G+ +H   I    A + F    +V+MY+KC   D+A K+F R+ + D+V+W  I
Sbjct: 160 NADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTI 219

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q G  ++A ++   M++   +P+   L +++ A  + G    G+SIH    + GF
Sbjct: 220 IAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGF 279

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
                +  AL  MY + G V     +F+ +  +  VSWN++   +     P++ + +F +
Sbjct: 280 AKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEK 339

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           ML +G  P   T +  L AC+ L D+  GK +H    + +L  +  V  SL+ MY K   
Sbjct: 340 MLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKR 399

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++ A   F++L  +   ++ A+I  YAQ G    AL CF +M+  G+K + FT+ S +  
Sbjct: 400 VDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPA 459

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
            + ++   + + +H + +++    ++FV+TALV MY+KCG+I  A  +F   + R   +W
Sbjct: 460 LAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITW 519

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N MI GY  HGLG  AL+ F  M      P++IT++ V+SACSH GL++EG +HF S+K+
Sbjct: 520 NAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQ 579

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            YG+ P++ H+  M+D+LGRAG+  E  +FI    ++P   V+  +LGAC  H NIE+ E
Sbjct: 580 DYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGE 639

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           K A+KL EL P     +V  ++I A+  +W+  + VR  +  +G+KK P CS +E+
Sbjct: 640 KAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVEL 695



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 187/400 (46%)

Query: 76  MAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQE 135
           + I+ G   +      LV ++SK G  + A +VF  I D     +  ++    +    + 
Sbjct: 71  LVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLET 130

Query: 136 AAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVS 195
           A      MR   VKP  +  T L++   +  D + G+ IH  +    F ++      +V+
Sbjct: 131 ALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVN 190

Query: 196 MYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCT 255
           MY +  ++    ++F+ +  +D VSWN + + F       + L +  +M  +G +P+  T
Sbjct: 191 MYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSIT 250

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
            + +L A + +  +  GK +H + I+        + T+L DMY K G +E A + FD + 
Sbjct: 251 LVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMD 310

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRL 375
            K + ++ +++  Y Q GE E A+  F KM  EGI     T+   L+ C+ +  L  G+ 
Sbjct: 311 QKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKF 370

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           +H    +     D+ V  +L++MY+KC  +D A  +F     R   SWN MI GY ++G 
Sbjct: 371 VHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGR 430

Query: 436 GEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
             +AL  F  M   G  PD  T V V+ A + + +    K
Sbjct: 431 VSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAK 470



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 155/309 (50%), Gaps = 3/309 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ +F  M +  VVSWN++++GY ++G+ +K + +F  M +     +  ++   L  
Sbjct: 299 VETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHA 358

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+ G ++ G+ VH    +L    D  +  SL+ MYSKC   D A  +F  +     V+W
Sbjct: 359 CADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSW 418

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    Q G   EA   F+ M+   +KP+ F + S++ A  E    R  + IH +I +
Sbjct: 419 NAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIR 478

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              + +  V  ALV MY + G +    ++F+ I+ +  ++WNA+   +  +      L +
Sbjct: 479 SCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDL 538

Query: 241 FYQMLLKGFKPNMCTFIVILKAC--SSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           F +M     +PN  T++ ++ AC  S L D G  +   +    + L+ +     ++VD+ 
Sbjct: 539 FDKMKKGAVEPNDITYLSVISACSHSGLVDEGL-RHFKSMKQDYGLEPSMDHYGAMVDLL 597

Query: 299 DKSGCLEDA 307
            ++G +++A
Sbjct: 598 GRAGRIKEA 606



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 83/200 (41%), Gaps = 22/200 (11%)

Query: 376 LHSI---AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
           LH I    +K G   +    T LV++++K GSI++A  VF+    +  A ++ M+ GY K
Sbjct: 65  LHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAK 124

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK 492
           +   E AL     M  +   P    F  +L  C     ++ G       K+I+G   T  
Sbjct: 125 NSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRG-------KEIHGQLITNS 177

Query: 493 HFA---CMIDILGRAGKFTEIENFITETKLTP--NALVWENLLGACSWHGNIELDEKDAE 547
             A    M  ++    K  +I++        P  + + W  ++   S +G        A+
Sbjct: 178 FAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGF-------AK 230

Query: 548 KLLELEPKMESNYVFPSDIS 567
           K LEL  +M+     P  I+
Sbjct: 231 KALELVLRMQDEGQRPDSIT 250


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 203/598 (33%), Positives = 322/598 (53%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R+F  MPE N+VS+  L+ GYA  G  ++   LF  ++    + + F L+T+LK    
Sbjct: 103 ARRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVA 162

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                    +HA A +LG   + F+  SL+D YS CG   +A  VF  I   D V W A+
Sbjct: 163 MDAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAM 222

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           ++C  +    ++A   F+ MR +  KPN FVLTS+++A         G+ IH    K   
Sbjct: 223 VSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLC 282

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           +++  VG AL+ MY + G +     VFE I H D + W+ L SR+      +Q   +F +
Sbjct: 283 DTEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLR 342

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M+     PN  +   +L+AC++++ +  G+Q+H   IK   +    VG +L+D+Y K   
Sbjct: 343 MMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRN 402

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +E++   F SL + +  ++  II  Y Q+G AE AL  F++MR   + S + T +S L  
Sbjct: 403 MENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRA 462

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+  A++ +   +HS+  K+    D  V  +L+  YAKCG I DA  VF+     D  SW
Sbjct: 463 CANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSW 522

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I GY  HG    ALE F  M      P+++TFV +LS C   GL+ +G   F+S+  
Sbjct: 523 NAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTM 582

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            + I P++ H+ C++ +LGRAG+  +   FI +   TP+ +VW  LL +C  H N+ L +
Sbjct: 583 DHRIKPSMDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGK 642

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
             AEK+LE+EP+ E+ YV  S++ A  G  +  + +R  + + G+KKE   SW+E+ G
Sbjct: 643 FSAEKVLEIEPQDETTYVLLSNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKG 700



 Score =  238 bits (607), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 153/526 (29%), Positives = 271/526 (51%), Gaps = 19/526 (3%)

Query: 48  KFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLG--CALDKFLSCSLVDMYSKCGLADNA 105
           K   ++ + +L+     G  +AG+ VHA  ++ G    LD F +  L+++Y+K G    A
Sbjct: 44  KLDSYACARLLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAA 103

Query: 106 LKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTET 165
            ++F  + + ++V++  ++     +G  +EAA +F  ++    + N FVLT++++     
Sbjct: 104 RRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAM 163

Query: 166 GDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALF 225
                   IHA  CK G + +  VG++L+  Y   G VS+   VF+ I  +D+V+W A+ 
Sbjct: 164 DAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMV 223

Query: 226 SRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLD 285
           S + + + P+  L  F +M + G KPN      +LKA   LS    GK +H   +K   D
Sbjct: 224 SCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCD 283

Query: 286 GNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM 345
               VG +L+DMY K G +EDA   F+ + + D+  ++ +I+ YAQ+ + E A + F +M
Sbjct: 284 TEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRM 343

Query: 346 RLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSI 405
               +  NEF+L+  L  C+ VA L  G+ +H++ +K G+  ++FV  AL+ +YAKC ++
Sbjct: 344 MRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNM 403

Query: 406 DDAEAVFKGSALRDT--ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           +++  +F+  +LRD    SWN +I GY + G  E AL  F+ M     +  ++TF  VL 
Sbjct: 404 ENSLEIFR--SLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLR 461

Query: 464 ACSHMGLIEEGKKHFSSIKKIYGITPTIKHFAC--MIDILGRAGKFTEIENFITETKLTP 521
           AC++   I+   +  S I+K      TI    C  +ID   + G   +    + E+ +  
Sbjct: 462 ACANTASIKHTVQIHSLIEKSTFNNDTI---VCNSLIDTYAKCGCIRDALK-VFESIIQC 517

Query: 522 NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           + + W  ++   + HG        A   LEL  +M  +   P+D++
Sbjct: 518 DVVSWNAIISGYALHGR-------ATDALELFNRMNKSDTKPNDVT 556



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 167/308 (54%), Gaps = 1/308 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ VF+ +P  +V+ W+ L++ YA+S   ++   +F  M       ++FSLS VL+ 
Sbjct: 302 IEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQA 361

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            AN  ++  GQ +H + I+LG   + F+  +L+D+Y+KC   +N+L++F  ++D + V+W
Sbjct: 362 CANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSW 421

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             II    Q G  ++A  +F  MR + V   Q   +S++RA   T   +    IH++I K
Sbjct: 422 NTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEK 481

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             F +DT+V N+L+  Y + G +    +VFE+I   D VSWNA+ S +  +      L +
Sbjct: 482 STFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALEL 541

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL-HAHTIKHSLDGNHVVGTSLVDMYD 299
           F +M     KPN  TF+ +L  C S   V  G  L ++ T+ H +  +    T +V +  
Sbjct: 542 FNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLG 601

Query: 300 KSGCLEDA 307
           ++G L DA
Sbjct: 602 RAGRLNDA 609


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 209/606 (34%), Positives = 347/606 (57%), Gaps = 15/606 (2%)

Query: 4   AKRVFKSMPE--LNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG- 60
           A+ VF  MP    ++VSW A+ +  + +G   + + LF    +     + F+L    +  
Sbjct: 103 ARSVFDGMPVGLRDLVSWTAMASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQAC 162

Query: 61  FANSGYIKAGQVVHAMAIRLG-CALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           FA+  +  AG  V  +  +LG    D  + C+L+DM++K G      +VF  + +  VV 
Sbjct: 163 FASELFHLAGGAVLGLVFKLGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVV 222

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  +IT   Q G   EA ++F  M E+  +P+Q+ L+S++ A TE G  R G+ +H++  
Sbjct: 223 WTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLAL 282

Query: 180 KYGFESDTLVGNALVSMYME--NGRVSYGSR-VFEAIAHQDSVSWNALFSRFQDYESPD- 235
           + G ESD+ V   LV MY +  NG+  + +R VF  +   + ++W AL S +    S D 
Sbjct: 283 RLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDN 342

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
           Q + +F +ML +G +PN  T+  +LKAC++L D   G+Q+H H +K +L   +VVG +LV
Sbjct: 343 QVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALV 402

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE-GIKSNE 354
            MY +SG +E+A  AFD L  K++ +++  +    ++       + ++  R+E GI +  
Sbjct: 403 SMYAESGSIEEARHAFDQLYEKNMVSFSGNLDGDGRSN----TYQDYQIERMELGIST-- 456

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
           FT  S ++  + V  L  G+ LH++++K G   D  +  +LV+MY++CG + DA  VF  
Sbjct: 457 FTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDE 516

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
               +  SW  MI G  KHG   +ALE F  M+  G  P+++T++ VLSACSH GL++EG
Sbjct: 517 MNDHNVISWTSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEG 576

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
           K+HF  ++K +G+ P ++H+ACM+D+LGR+G   +  +FI E     +ALVW+ LLGAC 
Sbjct: 577 KEHFRMMQKHHGLIPRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLGACK 636

Query: 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSC 594
            H N+++ E  A  +++LEP+  + YV  S++ A  G W+  + +R+L+  + + KE   
Sbjct: 637 THNNMDIGEIAANHVIQLEPQDPAPYVLLSNLYAEAGLWDQVARIRSLMRDKNLMKEKGL 696

Query: 595 SWIEVD 600
           SW+ VD
Sbjct: 697 SWMHVD 702



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 145/513 (28%), Positives = 250/513 (48%), Gaps = 28/513 (5%)

Query: 67  IKAGQVVHAMAIRLGCAL--DKFLSCSLVDMYSKCGLADNALKVF--YRIKDPDVVAWGA 122
           I  G+ +    +R G  L  D  ++ SL+ +YSKC     A  VF    +   D+V+W A
Sbjct: 63  IHLGRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTA 122

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD-QRCGESIHAVICKY 181
           + +CL + G   EA ++F    E  + PN F L +  +A   +      G ++  ++ K 
Sbjct: 123 MASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKL 182

Query: 182 GF-ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           GF  +D  VG AL+ M+ +NG +    RVF+ +  +  V W  L +R+      D+ + +
Sbjct: 183 GFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVEL 242

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  ML  GF+P+  T   +L AC+ L     G+QLH+  ++  L+ +  V   LVDMY K
Sbjct: 243 FLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAK 302

Query: 301 S---GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAE-MALKCFRKMRLEGIKSNEFT 356
           S     L +A   F+ +   ++ A+TA+++ Y Q G  +   +  F KM  EGI+ N  T
Sbjct: 303 SHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHIT 362

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDM-FVSTALVAMYAKCGSIDDAEAVFKGS 415
            +S L  C+ +    +GR +H+  VK+ +L D+  V  ALV+MYA+ GSI++A   F   
Sbjct: 363 YSSMLKACANLGDQDSGRQIHTHCVKS-NLADLNVVGNALVSMYAESGSIEEARHAFDQL 421

Query: 416 ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
             ++  S++  + G  +    +   +  RM L         TF  ++SA + +G++ +G+
Sbjct: 422 YEKNMVSFSGNLDGDGRSNTYQD-YQIERMELG----ISTFTFGSLISAAASVGMLTKGQ 476

Query: 476 K-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
           + H  S+K  +G    I +   ++ +  R G   +      E     N + W +++   +
Sbjct: 477 RLHALSLKAGFGSDRAIGN--SLVSMYSRCGYLVDACQVFDEMN-DHNVISWTSMISGLA 533

Query: 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            HG        A + LEL   M +  V P+D++
Sbjct: 534 KHGY-------AARALELFHDMIAAGVKPNDVT 559



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/321 (30%), Positives = 168/321 (52%), Gaps = 12/321 (3%)

Query: 167 DQRCGESIHAVICKYG--FESDTLVGNALVSMYMENGRVSYGSRVFEA--IAHQDSVSWN 222
           D   G ++   + + G   E+D +V N+L+++Y +   V+    VF+   +  +D VSW 
Sbjct: 62  DIHLGRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWT 121

Query: 223 ALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKAC--SSLSDVGFGKQLHAHTI 280
           A+ S      +  + LR+F + L +G  PN  T     +AC  S L  +  G  L     
Sbjct: 122 AMASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVL-GLVF 180

Query: 281 KHSLDGNHV-VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMAL 339
           K    G  V VG +L+DM+ K+G L      FD L  + +  +T +IT YAQ+G ++ A+
Sbjct: 181 KLGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAV 240

Query: 340 KCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMY 399
           + F  M   G + +++TL+S L+ C+ + +   G+ LHS+A++ G   D  VS  LV MY
Sbjct: 241 ELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMY 300

Query: 400 AKC---GSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGE-KALEAFRMMLDEGYVPDE 455
           AK     S+ +A  VF      +  +W  ++ GYV+ G  + + +  F  ML+EG  P+ 
Sbjct: 301 AKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNH 360

Query: 456 ITFVVVLSACSHMGLIEEGKK 476
           IT+  +L AC+++G  + G++
Sbjct: 361 ITYSSMLKACANLGDQDSGRQ 381



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 92/166 (55%), Gaps = 5/166 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+  F  + E N+VS++  L+     GDG+   +    ++ ME   S F+  +++  
Sbjct: 411 IEEARHAFDQLYEKNMVSFSGNLD-----GDGRSNTYQDYQIERMELGISTFTFGSLISA 465

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+ G +  GQ +HA++++ G   D+ +  SLV MYS+CG   +A +VF  + D +V++W
Sbjct: 466 AASVGMLTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISW 525

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
            ++I+ L + G    A ++F+ M  + VKPN     +++ A +  G
Sbjct: 526 TSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAG 571


>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 846

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 204/598 (34%), Positives = 323/598 (54%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+RVF  +P+ + + WN +L+GY +SGD    M  FC M+      +  + + +L   A 
Sbjct: 199 ARRVFDELPQRDTILWNVMLHGYVKSGDFNNAMGTFCGMRTSYSMVNSVTYTCILSICAT 258

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G    G  VH + I  G   D  ++ +LV MYSKCG   +A K+F  +   D V W  +
Sbjct: 259 RGKFCLGTQVHGLVIGSGFEFDPQVANTLVAMYSKCGNLFDARKLFNTMPQTDTVTWNGL 318

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q G   EAA +FN M  + VKP+     S + +  E+G  R  + +H+ I ++  
Sbjct: 319 IAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRV 378

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D  + +AL+ +Y + G V    ++F+     D     A+ S +  +      +  F  
Sbjct: 379 PFDVYLKSALIDIYFKGGDVEMARKIFQQNTLVDVAVCTAMISGYVLHGLNIDAINTFRW 438

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           ++ +G  PN  T   +L AC++L+ +  GK+LH   +K  L+    VG+++ DMY K G 
Sbjct: 439 LIQEGMVPNSLTMASVLPACAALAALKLGKELHCDILKKQLENIVNVGSAITDMYAKCGR 498

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L+ A   F  ++  D   + ++I+S++Q G+ EMA+  FR+M + G K +  +L+S L+ 
Sbjct: 499 LDLAYEFFRRMSETDSICWNSMISSFSQNGKPEMAVDLFRQMGMSGAKFDSVSLSSALSS 558

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
            + +  L  G+ +H   ++     D FV++AL+ MY+KCG +  A  VF   A ++  SW
Sbjct: 559 AANLPALYYGKEMHGYVIRNAFSSDTFVASALIDMYSKCGKLALARCVFNLMAGKNEVSW 618

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I  Y  HG   + L+ F  ML  G  PD +TF+V++SAC H GL+ EG  +F  + +
Sbjct: 619 NSIIAAYGNHGCARECLDLFHEMLRAGVHPDHVTFLVIISACGHAGLVGEGIHYFHCMTR 678

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            YGI   ++H+ACM+D+ GRAG+  E  + I     TP+A VW  LLGAC  HGN+EL +
Sbjct: 679 EYGIGARMEHYACMVDLYGRAGRLHEAFDAIKSMPFTPDAGVWGTLLGACRLHGNVELAK 738

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
             +  LLEL+PK    YV  S++ A  G W     VR L+  +G++K P  SWI+V+G
Sbjct: 739 LASRHLLELDPKNSGYYVLLSNVHADAGEWGSVLKVRRLMKEKGVQKIPGYSWIDVNG 796



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 123/500 (24%), Positives = 228/500 (45%), Gaps = 4/500 (0%)

Query: 43  KDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLA 102
           K   + +    L ++ +  +++  ++  + VH   I  G +    LS  ++ +Y  CG  
Sbjct: 36  KPETQDYLTTQLESLFRACSDASVVQQARQVHTQIIVGGMSDVCALSSRVLGLYVLCGRI 95

Query: 103 DNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRAT 162
            +   +F+ ++  + + W  +I  L   G    A   +  M  S+V P+++    +++A 
Sbjct: 96  SDGGNLFFGLELCNALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKAC 155

Query: 163 TETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWN 222
               +      +H      GF  D  VG+AL+ +Y +NG +    RVF+ +  +D++ WN
Sbjct: 156 GGLNNVPLCMVVHNTARSLGFHVDLFVGSALIKLYADNGYICDARRVFDELPQRDTILWN 215

Query: 223 ALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKH 282
            +   +      +  +  F  M       N  T+  IL  C++      G Q+H   I  
Sbjct: 216 VMLHGYVKSGDFNNAMGTFCGMRTSYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGS 275

Query: 283 SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCF 342
             + +  V  +LV MY K G L DA   F+++   D   +  +I  Y Q G  + A   F
Sbjct: 276 GFEFDPQVANTLVAMYSKCGNLFDARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLF 335

Query: 343 RKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC 402
             M   G+K +  T AS L       +L + + +HS  V+     D+++ +AL+ +Y K 
Sbjct: 336 NAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDIYFKG 395

Query: 403 GSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVL 462
           G ++ A  +F+ + L D A    MI GYV HGL   A+  FR ++ EG VP+ +T   VL
Sbjct: 396 GDVEMARKIFQQNTLVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASVL 455

Query: 463 SACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTP 521
            AC+ +  ++ GK+ H   +KK   +   +   + + D+  + G+      F      T 
Sbjct: 456 PACAALAALKLGKELHCDILKK--QLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSET- 512

Query: 522 NALVWENLLGACSWHGNIEL 541
           +++ W +++ + S +G  E+
Sbjct: 513 DSICWNSMISSFSQNGKPEM 532



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 142/562 (25%), Positives = 250/562 (44%), Gaps = 11/562 (1%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           +F  +   N + WN ++ G    G     +  +  M        K++   V+K       
Sbjct: 101 LFFGLELCNALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNN 160

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +    VVH  A  LG  +D F+  +L+ +Y+  G   +A +VF  +   D + W  ++  
Sbjct: 161 VPLCMVVHNTARSLGFHVDLFVGSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHG 220

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             + G    A   F  MR S    N    T ++      G    G  +H ++   GFE D
Sbjct: 221 YVKSGDFNNAMGTFCGMRTSYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFD 280

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             V N LV+MY + G +    ++F  +   D+V+WN L + +      D+   +F  M+ 
Sbjct: 281 PQVANTLVAMYSKCGNLFDARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMIS 340

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
            G KP+  TF   L +      +   K++H++ ++H +  +  + ++L+D+Y K G +E 
Sbjct: 341 AGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEM 400

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A   F      D+   TA+I+ Y   G    A+  FR +  EG+  N  T+AS L  C+ 
Sbjct: 401 ARKIFQQNTLVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASVLPACAA 460

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           +A L  G+ LH   +K      + V +A+  MYAKCG +D A   F+  +  D+  WN M
Sbjct: 461 LAALKLGKELHCDILKKQLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSETDSICWNSM 520

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIY 485
           I  + ++G  E A++ FR M   G   D ++    LS+ +++  +  GK+ H   I+  +
Sbjct: 521 ISSFSQNGKPEMAVDLFRQMGMSGAKFDSVSLSSALSSAANLPALYYGKEMHGYVIRNAF 580

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKD 545
                +   + +ID+  + GK   +   +       N + W +++ A   HG        
Sbjct: 581 SSDTFVA--SALIDMYSKCGKLA-LARCVFNLMAGKNEVSWNSIIAAYGNHGC------- 630

Query: 546 AEKLLELEPKMESNYVFPSDIS 567
           A + L+L  +M    V P  ++
Sbjct: 631 ARECLDLFHEMLRAGVHPDHVT 652



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 174/362 (48%), Gaps = 3/362 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E+A+++F+    ++V    A+++GY   G     ++ F  +       +  ++++VL  
Sbjct: 398 VEMARKIFQQNTLVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASVLPA 457

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    +K G+ +H   ++        +  ++ DMY+KCG  D A + F R+ + D + W
Sbjct: 458 CAALAALKLGKELHCDILKKQLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSETDSICW 517

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I+   Q G  + A  +F  M  S  K +   L+S + +         G+ +H  + +
Sbjct: 518 NSMISSFSQNGKPEMAVDLFRQMGMSGAKFDSVSLSSALSSAANLPALYYGKEMHGYVIR 577

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             F SDT V +AL+ MY + G+++    VF  +A ++ VSWN++ + + ++    + L +
Sbjct: 578 NAFSSDTFVASALIDMYSKCGKLALARCVFNLMAGKNEVSWNSIIAAYGNHGCARECLDL 637

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFG-KQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           F++ML  G  P+  TF+VI+ AC     VG G    H  T ++ +         +VD+Y 
Sbjct: 638 FHEMLRAGVHPDHVTFLVIISACGHAGLVGEGIHYFHCMTREYGIGARMEHYACMVDLYG 697

Query: 300 KSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRK-MRLEGIKSNEFTL 357
           ++G L +A  A  S+    D   +  ++ +    G  E+A    R  + L+   S  + L
Sbjct: 698 RAGRLHEAFDAIKSMPFTPDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKNSGYYVL 757

Query: 358 AS 359
            S
Sbjct: 758 LS 759


>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
 gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
          Length = 863

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 201/592 (33%), Positives = 324/592 (54%)

Query: 8   FKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYI 67
           F  MPE N VSW A + G  ++    + + LF  M+ +    S+ S ++  +  A    +
Sbjct: 207 FYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCL 266

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127
             G+ +HA AI+   + D+ +  ++VD+Y+K     +A + F+ + +  V    A++  L
Sbjct: 267 NTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGL 326

Query: 128 DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDT 187
            + G   EA  +F  M  SS++ +   L+ +  A  ET     G+ +H +  K GF+ D 
Sbjct: 327 VRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDI 386

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK 247
            V NA++ +Y +   +     +F+ +  +DSVSWNA+ +  +     D  +  F +ML  
Sbjct: 387 CVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRF 446

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           G KP+  T+  +LKAC++L  + +G  +H   IK  L  +  V +++VDMY K G +++A
Sbjct: 447 GMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEA 506

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367
               D +  + + ++ AI++ ++   E+E A K F +M   G+K + FT A+ L+ C+ +
Sbjct: 507 QKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANL 566

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
           AT+  G+ +H   +K   L D ++S+ LV MYAKCG + D+  VF+    RD  SWN MI
Sbjct: 567 ATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMI 626

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGI 487
            GY  HGLG +AL  F  M  E  VP+  TFV VL ACSH+GL ++G ++F  +   Y +
Sbjct: 627 CGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKL 686

Query: 488 TPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAE 547
            P ++HFACM+DILGR+    E   FI       +A++W+ LL  C    ++E+ E  A 
Sbjct: 687 EPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAAS 746

Query: 548 KLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            +L L+P   S Y+  S++ A  G+W D S  R LL    +KKEP CSWIEV
Sbjct: 747 NVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEV 798



 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 140/480 (29%), Positives = 234/480 (48%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A  +F  MP+ +VVSWNAL++GY + G  Q+ + LF  M        + + + +LK  + 
Sbjct: 102 AVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSA 161

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G  VHA+A++ G  +D     +LVDMY KC   D+AL  FY + + + V+WGA 
Sbjct: 162 LEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAA 221

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q        ++F  M+   +  +Q    S  R+         G  +HA   K  F
Sbjct: 222 IAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKF 281

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            SD +VG A+V +Y +   ++   R F  + +    + NA+           + + +F  
Sbjct: 282 SSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQF 341

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M+    + ++ +   +  AC+       G+Q+H   IK   D +  V  +++D+Y K   
Sbjct: 342 MIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKA 401

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L +A + F  +  KD  ++ AII +  Q G  +  +  F +M   G+K ++FT  S L  
Sbjct: 402 LMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKA 461

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ + +L  G ++H   +K+G   D FV++ +V MY KCG ID+A+ +      +   SW
Sbjct: 462 CAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSW 521

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N ++ G+  +   E+A + F  MLD G  PD  TF  VL  C+++  IE GK+    I K
Sbjct: 522 NAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIK 581



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 120/376 (31%), Positives = 191/376 (50%), Gaps = 3/376 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R F  +P   V + NA++ G   +G G + M LF  M     +F   SLS V    A 
Sbjct: 304 ARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAE 363

Query: 64  S-GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           + GY + GQ VH +AI+ G  +D  ++ +++D+Y KC     A  +F  +K  D V+W A
Sbjct: 364 TKGYFQ-GQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNA 422

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           II  L+Q G   +    FN M    +KP+ F   S+++A         G  +H  + K G
Sbjct: 423 IIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSG 482

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
             SD  V + +V MY + G +    ++ + I  Q  VSWNA+ S F   +  ++  + F 
Sbjct: 483 LGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFS 542

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +ML  G KP+  TF  +L  C++L+ +  GKQ+H   IK  +  +  + ++LVDMY K G
Sbjct: 543 EMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCG 602

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            + D+ + F+ +  +D  ++ A+I  YA  G    AL+ F +M+ E +  N  T  + L 
Sbjct: 603 DMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLR 662

Query: 363 GCSPVATLANG-RLLH 377
            CS V    +G R  H
Sbjct: 663 ACSHVGLFDDGCRYFH 678



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 142/541 (26%), Positives = 254/541 (46%), Gaps = 41/541 (7%)

Query: 91  SLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKP 150
           +++  YS  G    A+ +F  + DPDVV+W A+++   Q+G  QE+  +F  M    V P
Sbjct: 88  TMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSP 147

Query: 151 NQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF 210
           ++     L+++ +   +   G  +HA+  K G E D   G+ALV MY +   +      F
Sbjct: 148 DRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFF 207

Query: 211 EAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVG 270
             +  ++ VSW A  +     E   +GL +F +M   G   +  ++    ++C+++S + 
Sbjct: 208 YGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLN 267

Query: 271 FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
            G+QLHAH IK+    + VVGT++VD+Y K+  L DA  AF  L N  +    A++    
Sbjct: 268 TGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLV 327

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
           +AG    A+  F+ M    I+ +  +L+   + C+       G+ +H +A+K+G  +D+ 
Sbjct: 328 RAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDIC 387

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
           V+ A++ +Y KC ++ +A  +F+G   +D+ SWN +I    ++G  +  +  F  ML  G
Sbjct: 388 VNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFG 447

Query: 451 YVPDEITFVVVLSACSHMGLIEEG-KKHFSSIKKIYG----ITPTIKHFACMIDILGRAG 505
             PD+ T+  VL AC+ +  +E G   H   IK   G    +  T+    C   I+  A 
Sbjct: 448 MKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQ 507

Query: 506 KF-------------------------TEIENFITE---TKLTPNALVWENLLGACSWHG 537
           K                           E + F +E     L P+   +  +L  C+   
Sbjct: 508 KLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLA 567

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPS--DISATQGRWNDFSGVRALLSSQGIKKEPSCS 595
            IEL ++   ++++ E  ++  Y+  +  D+ A  G   D     +LL  + ++K    S
Sbjct: 568 TIELGKQIHGQIIKQE-MLDDEYISSTLVDMYAKCGDMPD-----SLLVFEKVEKRDFVS 621

Query: 596 W 596
           W
Sbjct: 622 W 622



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 178/356 (50%), Gaps = 4/356 (1%)

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           DT+  N +++ Y   G +S    +F+ +   D VSWNAL S +       + + +F +M 
Sbjct: 82  DTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMA 141

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
            +G  P+  TF V+LK+CS+L ++  G Q+HA  +K  L+ +   G++LVDMY K   L+
Sbjct: 142 RRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLD 201

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
           DA   F  +  ++  ++ A I    Q  +    L+ F +M+  G+  ++ + AS    C+
Sbjct: 202 DALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCA 261

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
            ++ L  GR LH+ A+K     D  V TA+V +YAK  S+ DA   F G       + N 
Sbjct: 262 AMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNA 321

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM-GLIEEGKKHFSSIKKI 484
           M+ G V+ GLG +A+  F+ M+      D ++   V SAC+   G  +  + H  +IK  
Sbjct: 322 MMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSG 381

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + +   + +   ++D+ G+     E    I +     +++ W  ++ A   +G+ +
Sbjct: 382 FDVDICVNN--AVLDLYGKCKALME-AYLIFQGMKQKDSVSWNAIIAALEQNGHYD 434



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 34/155 (21%)

Query: 381 VKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM-------------- 426
           V +G +   FVS  L+ MYA+C     A  VF     RDT SWN M              
Sbjct: 44  VVSGFVPTAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAV 103

Query: 427 -----------------IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
                            + GY + G+ +++++ F  M   G  PD  TF V+L +CS + 
Sbjct: 104 ALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALE 163

Query: 470 LIEEG-KKHFSSIKKIYGITPTIKHFACMIDILGR 503
            +  G + H  ++K   G+   ++  + ++D+ G+
Sbjct: 164 ELSLGVQVHALAVKT--GLEIDVRTGSALVDMYGK 196


>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
 gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 905

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 201/592 (33%), Positives = 324/592 (54%)

Query: 8   FKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYI 67
           F  MPE N VSW A + G  ++    + + LF  M+ +    S+ S ++  +  A    +
Sbjct: 249 FYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCL 308

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127
             G+ +HA AI+   + D+ +  ++VD+Y+K     +A + F+ + +  V    A++  L
Sbjct: 309 NTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGL 368

Query: 128 DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDT 187
            + G   EA  +F  M  SS++ +   L+ +  A  ET     G+ +H +  K GF+ D 
Sbjct: 369 VRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDI 428

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK 247
            V NA++ +Y +   +     +F+ +  +DSVSWNA+ +  +     D  +  F +ML  
Sbjct: 429 CVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRF 488

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           G KP+  T+  +LKAC++L  + +G  +H   IK  L  +  V +++VDMY K G +++A
Sbjct: 489 GMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEA 548

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367
               D +  + + ++ AI++ ++   E+E A K F +M   G+K + FT A+ L+ C+ +
Sbjct: 549 QKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANL 608

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
           AT+  G+ +H   +K   L D ++S+ LV MYAKCG + D+  VF+    RD  SWN MI
Sbjct: 609 ATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMI 668

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGI 487
            GY  HGLG +AL  F  M  E  VP+  TFV VL ACSH+GL ++G ++F  +   Y +
Sbjct: 669 CGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKL 728

Query: 488 TPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAE 547
            P ++HFACM+DILGR+    E   FI       +A++W+ LL  C    ++E+ E  A 
Sbjct: 729 EPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAAS 788

Query: 548 KLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            +L L+P   S Y+  S++ A  G+W D S  R LL    +KKEP CSWIEV
Sbjct: 789 NVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEV 840



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 139/477 (29%), Positives = 233/477 (48%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           +F  MP+ +VVSWNAL++GY + G  Q+ + LF  M        + + + +LK  +    
Sbjct: 147 LFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEE 206

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +  G  VHA+A++ G  +D     +LVDMY KC   D+AL  FY + + + V+WGA I  
Sbjct: 207 LSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAG 266

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             Q        ++F  M+   +  +Q    S  R+         G  +HA   K  F SD
Sbjct: 267 CVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSD 326

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
            +VG A+V +Y +   ++   R F  + +    + NA+           + + +F  M+ 
Sbjct: 327 RVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIR 386

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
              + ++ +   +  AC+       G+Q+H   IK   D +  V  +++D+Y K   L +
Sbjct: 387 SSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALME 446

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A + F  +  KD  ++ AII +  Q G  +  +  F +M   G+K ++FT  S L  C+ 
Sbjct: 447 AYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAA 506

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           + +L  G ++H   +K+G   D FV++ +V MY KCG ID+A+ +      +   SWN +
Sbjct: 507 LRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAI 566

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           + G+  +   E+A + F  MLD G  PD  TF  VL  C+++  IE GK+    I K
Sbjct: 567 LSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIK 623



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 120/376 (31%), Positives = 191/376 (50%), Gaps = 3/376 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R F  +P   V + NA++ G   +G G + M LF  M     +F   SLS V    A 
Sbjct: 346 ARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAE 405

Query: 64  S-GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           + GY + GQ VH +AI+ G  +D  ++ +++D+Y KC     A  +F  +K  D V+W A
Sbjct: 406 TKGYFQ-GQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNA 464

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           II  L+Q G   +    FN M    +KP+ F   S+++A         G  +H  + K G
Sbjct: 465 IIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSG 524

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
             SD  V + +V MY + G +    ++ + I  Q  VSWNA+ S F   +  ++  + F 
Sbjct: 525 LGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFS 584

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +ML  G KP+  TF  +L  C++L+ +  GKQ+H   IK  +  +  + ++LVDMY K G
Sbjct: 585 EMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCG 644

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            + D+ + F+ +  +D  ++ A+I  YA  G    AL+ F +M+ E +  N  T  + L 
Sbjct: 645 DMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLR 704

Query: 363 GCSPVATLANG-RLLH 377
            CS V    +G R  H
Sbjct: 705 ACSHVGLFDDGCRYFH 720



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 142/541 (26%), Positives = 254/541 (46%), Gaps = 41/541 (7%)

Query: 91  SLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKP 150
           +++  YS  G    A+ +F  + DPDVV+W A+++   Q+G  QE+  +F  M    V P
Sbjct: 130 TMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSP 189

Query: 151 NQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF 210
           ++     L+++ +   +   G  +HA+  K G E D   G+ALV MY +   +      F
Sbjct: 190 DRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFF 249

Query: 211 EAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVG 270
             +  ++ VSW A  +     E   +GL +F +M   G   +  ++    ++C+++S + 
Sbjct: 250 YGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLN 309

Query: 271 FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
            G+QLHAH IK+    + VVGT++VD+Y K+  L DA  AF  L N  +    A++    
Sbjct: 310 TGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLV 369

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
           +AG    A+  F+ M    I+ +  +L+   + C+       G+ +H +A+K+G  +D+ 
Sbjct: 370 RAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDIC 429

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
           V+ A++ +Y KC ++ +A  +F+G   +D+ SWN +I    ++G  +  +  F  ML  G
Sbjct: 430 VNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFG 489

Query: 451 YVPDEITFVVVLSACSHMGLIEEG-KKHFSSIKKIYG----ITPTIKHFACMIDILGRAG 505
             PD+ T+  VL AC+ +  +E G   H   IK   G    +  T+    C   I+  A 
Sbjct: 490 MKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQ 549

Query: 506 KF-------------------------TEIENFITE---TKLTPNALVWENLLGACSWHG 537
           K                           E + F +E     L P+   +  +L  C+   
Sbjct: 550 KLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLA 609

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPS--DISATQGRWNDFSGVRALLSSQGIKKEPSCS 595
            IEL ++   ++++ E  ++  Y+  +  D+ A  G   D     +LL  + ++K    S
Sbjct: 610 TIELGKQIHGQIIKQE-MLDDEYISSTLVDMYAKCGDMPD-----SLLVFEKVEKRDFVS 663

Query: 596 W 596
           W
Sbjct: 664 W 664



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 178/356 (50%), Gaps = 4/356 (1%)

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           DT+  N +++ Y   G +S    +F+ +   D VSWNAL S +       + + +F +M 
Sbjct: 124 DTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMA 183

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
            +G  P+  TF V+LK+CS+L ++  G Q+HA  +K  L+ +   G++LVDMY K   L+
Sbjct: 184 RRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLD 243

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
           DA   F  +  ++  ++ A I    Q  +    L+ F +M+  G+  ++ + AS    C+
Sbjct: 244 DALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCA 303

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
            ++ L  GR LH+ A+K     D  V TA+V +YAK  S+ DA   F G       + N 
Sbjct: 304 AMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNA 363

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM-GLIEEGKKHFSSIKKI 484
           M+ G V+ GLG +A+  F+ M+      D ++   V SAC+   G  +  + H  +IK  
Sbjct: 364 MMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSG 423

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + +   + +   ++D+ G+     E    I +     +++ W  ++ A   +G+ +
Sbjct: 424 FDVDICVNN--AVLDLYGKCKALME-AYLIFQGMKQKDSVSWNAIIAALEQNGHYD 476



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 34/155 (21%)

Query: 381 VKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM-------------- 426
           V +G +   FVS  L+ MYA+C     A  VF     RDT SWN M              
Sbjct: 86  VVSGFVPTAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAV 145

Query: 427 -----------------IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
                            + GY + G+ +++++ F  M   G  PD  TF V+L +CS + 
Sbjct: 146 ALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALE 205

Query: 470 LIEEG-KKHFSSIKKIYGITPTIKHFACMIDILGR 503
            +  G + H  ++K   G+   ++  + ++D+ G+
Sbjct: 206 ELSLGVQVHALAVKT--GLEIDVRTGSALVDMYGK 238


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 212/602 (35%), Positives = 338/602 (56%), Gaps = 10/602 (1%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E  + +F  M   NVVSW +LL+GYA +G   +V+HL   M+      + F+ +TVL   
Sbjct: 156 EDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGAL 215

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           A+   I+ G  VHAM ++ G     F+  +L+ MY K  +  +A  VF  +   D V W 
Sbjct: 216 ADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWN 275

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            +I      G   E  ++F+ MR + VK ++ V  + ++  ++  +    + +H  + K 
Sbjct: 276 IMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKN 335

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFE-AIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           G+E    +  AL+  Y +   V    ++F  A A  + V+W A+   F    + ++ + +
Sbjct: 336 GYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDL 395

Query: 241 FYQMLLKGFKPNMCTFIVIL--KACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           F QM  +G +PN  T+  +L  K  S LS      QLHA  IK   +    V T+L+D Y
Sbjct: 396 FCQMSREGVRPNHFTYSTVLAGKPSSLLS------QLHAQIIKAYYEKVPSVATALLDAY 449

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K+G + ++   F S+  KD+ A++A++T  AQ  ++E A++ F ++  EG+K NE+T +
Sbjct: 450 VKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFS 509

Query: 359 SCLNGCSP-VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           S +N CS   AT+ +G+ +H+ AVK+G    + VS+AL+ MY+K G+I+ AE VF     
Sbjct: 510 SVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEE 569

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           RD  SWN MI GY +HG  +KALE F++M ++G   D++TF+ VL+AC+H GL+EEG+K+
Sbjct: 570 RDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKY 629

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F+ + K Y I   I+H++CM+D+  RAG F +  + I       +  +W  LL AC  H 
Sbjct: 630 FNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHR 689

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           N+EL +  AEKL+ L+P     YV  S+I A  G W + + VR L+  + +KKE  CSWI
Sbjct: 690 NLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWI 749

Query: 598 EV 599
           E+
Sbjct: 750 EI 751



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 152/567 (26%), Positives = 276/567 (48%), Gaps = 17/567 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A ++F   P  ++  +N LL  ++ +   ++ +HLF  +          +LS  LK    
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G+ VH  +++ G   D  +  SLVDMY K    ++   +F  +   +VV+W ++
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSL 176

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           ++   + G   E   + N M+   V PN F   +++ A  +      G  +HA+I K GF
Sbjct: 177 LSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGF 236

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E  T V NAL+ MY+++  V     VF+++  +DSV+WN +   +       +G ++F++
Sbjct: 237 EFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHR 296

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M L G K +   F   LK CS   ++ F KQLH   +K+  +    + T+L+  Y K   
Sbjct: 297 MRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSS 356

Query: 304 LEDAGVAFD-SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
           +++A   F  + A  ++  +TA+I  + Q    E A+  F +M  EG++ N FT ++ L 
Sbjct: 357 VDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLA 416

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
           G  P + L+    LH+  +K  +     V+TAL+  Y K G++ ++  VF     +D  +
Sbjct: 417 G-KPSSLLSQ---LHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVA 472

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC-SHMGLIEEGKK-HFSS 480
           W+ M+ G  +    EKA+E F  ++ EG  P+E TF  V++AC S    +E GK+ H ++
Sbjct: 473 WSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATA 532

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +K   G +  +   + ++ +  + G     E   T  +   + + W +++     HG   
Sbjct: 533 VKS--GKSNALCVSSALLTMYSKKGNIESAEKVFTRQE-ERDIVSWNSMITGYGQHG--- 586

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDIS 567
               DA+K LE+   M++  +   D++
Sbjct: 587 ----DAKKALEVFQIMQNQGLPLDDVT 609



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 126/471 (26%), Positives = 209/471 (44%), Gaps = 20/471 (4%)

Query: 105 ALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTE 164
           A ++F      D+  +  ++    +    +EA  +F  +  S +  +   L+  ++    
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 165 TGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNAL 224
             DQ  G  +H    K GF  D  VG +LV MYM+      G  +F+ +  ++ VSW +L
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSL 176

Query: 225 FSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL 284
            S +      D+ + +  QM ++G  PN  TF  +L A +  S +  G Q+HA  +K+  
Sbjct: 177 LSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGF 236

Query: 285 DGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRK 344
           +    V  +L+ MY KS  + DA   FDS+  +D   +  +I  YA  G      + F +
Sbjct: 237 EFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHR 296

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404
           MRL G+K +     + L  CS    L   + LH   VK G+     + TAL+  Y+KC S
Sbjct: 297 MRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSS 356

Query: 405 IDDAEAVFK-GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           +D+A  +F    A  +  +W  MIGG+V++   EKA++ F  M  EG  P+  T+  VL+
Sbjct: 357 VDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLA 416

Query: 464 ACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNA 523
                 L    + H   IK  Y   P++     ++D   + G   E            + 
Sbjct: 417 GKPSSLL---SQLHAQIIKAYYEKVPSVA--TALLDAYVKTGNVVESARVFYSIP-AKDI 470

Query: 524 LVWENLLGACSWHGNIELDEKDAEKLLEL------EPKMESNYVFPSDISA 568
           + W  +L   +         +D+EK +E+      E    + Y F S I+A
Sbjct: 471 VAWSAMLTGLA-------QTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINA 514



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 114/447 (25%), Positives = 190/447 (42%), Gaps = 16/447 (3%)

Query: 160 RATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSV 219
           +A    G+ R   SIH +  K+       + +  +       R  Y  ++F+    +D  
Sbjct: 13  KAKITVGNGRLQSSIHHI--KHFLHPHGFLYHQSLPFISLPSRPRYAHQLFDETPLKDIS 70

Query: 220 SWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHT 279
            +N L   F       + L +F  +   G   +  T    LK C  L D   G+Q+H  +
Sbjct: 71  HYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQS 130

Query: 280 IKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMAL 339
           +K     +  VGTSLVDMY K+   ED    FD +  K++ ++T++++ YA+ G  +  +
Sbjct: 131 LKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVI 190

Query: 340 KCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMY 399
               +M++EG+  N FT A+ L   +  + +  G  +H++ VK G     FV  AL+ MY
Sbjct: 191 HLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMY 250

Query: 400 AKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFV 459
            K   + DAEAVF    +RD+ +WN+MIGGY   G   +  + F  M   G       F 
Sbjct: 251 LKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFC 310

Query: 460 VVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK 518
             L  CS    +   K+ H   +K  Y     I+    ++    +     E     +   
Sbjct: 311 TALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIR--TALMVTYSKCSSVDEAFKLFSMAD 368

Query: 519 LTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSG 578
              N + W  ++G    + N        EK ++L  +M    V P+  + +       S 
Sbjct: 369 AAHNVVTWTAMIGGFVQNNN-------NEKAVDLFCQMSREGVRPNHFTYSTVLAGKPSS 421

Query: 579 VRALLSSQGIK----KEPSCSWIEVDG 601
           + + L +Q IK    K PS +   +D 
Sbjct: 422 LLSQLHAQIIKAYYEKVPSVATALLDA 448



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 64/118 (54%), Gaps = 5/118 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A++VF    E ++VSWN+++ GY + GD +K + +F  M++        +   VL  
Sbjct: 557 IESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTA 616

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFL---SCSLVDMYSKCGLADNALKVFYRIKDP 115
             ++G ++ G+    + I+    +DK +   SC +VD+YS+ G+ D A+ +   +  P
Sbjct: 617 CTHAGLVEEGEKYFNIMIK-DYHIDKKIEHYSC-MVDLYSRAGMFDKAMDIINGMPFP 672


>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
          Length = 863

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 201/592 (33%), Positives = 324/592 (54%)

Query: 8   FKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYI 67
           F  MPE N VSW A + G  ++    + + LF  M+ +    S+ S ++  +  A    +
Sbjct: 207 FYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCL 266

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127
             G+ +HA AI+   + D+ +  ++VD+Y+K     +A + F+ + +  V    A++  L
Sbjct: 267 NTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGL 326

Query: 128 DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDT 187
            + G   EA  +F  M  SS++ +   L+ +  A  ET     G+ +H +  K GF+ D 
Sbjct: 327 VRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDI 386

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK 247
            V NA++ +Y +   +     +F+ +  +DSVSWNA+ +  +     D  +  F +ML  
Sbjct: 387 CVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRF 446

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           G KP+  T+  +LKAC++L  + +G  +H   IK  L  +  V +++VDMY K G +++A
Sbjct: 447 GMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEA 506

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367
               D +  + + ++ AI++ ++   E+E A K F +M   G+K + FT A+ L+ C+ +
Sbjct: 507 QKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANL 566

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
           AT+  G+ +H   +K   L D ++S+ LV MYAKCG + D+  VF+    RD  SWN MI
Sbjct: 567 ATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMI 626

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGI 487
            GY  HGLG +AL  F  M  E  VP+  TFV VL ACSH+GL ++G ++F  +   Y +
Sbjct: 627 CGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKL 686

Query: 488 TPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAE 547
            P ++HFACM+DILGR+    E   FI       +A++W+ LL  C    ++E+ E  A 
Sbjct: 687 EPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAAS 746

Query: 548 KLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            +L L+P   S Y+  S++ A  G+W D S  R LL    +KKEP CSWIEV
Sbjct: 747 NVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEV 798



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 140/480 (29%), Positives = 234/480 (48%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A  +F  MP+ +VVSWNAL++GY + G  Q+ + LF  M        + + + +LK  + 
Sbjct: 102 AVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSA 161

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G  VHA+A++ G  +D     +LVDMY KC   D+AL  FY + + + V+WGA 
Sbjct: 162 LEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAA 221

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q        ++F  M+   +  +Q    S  R+         G  +HA   K  F
Sbjct: 222 IAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKF 281

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            SD +VG A+V +Y +   ++   R F  + +    + NA+           + + +F  
Sbjct: 282 SSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQF 341

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M+    + ++ +   +  AC+       G+Q+H   IK   D +  V  +++D+Y K   
Sbjct: 342 MIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKA 401

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L +A + F  +  KD  ++ AII +  Q G  +  +  F +M   G+K ++FT  S L  
Sbjct: 402 LMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKA 461

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ + +L  G ++H   +K+G   D FV++ +V MY KCG ID+A+ +      +   SW
Sbjct: 462 CAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSW 521

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N ++ G+  +   E+A + F  MLD G  PD  TF  VL  C+++  IE GK+    I K
Sbjct: 522 NAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIK 581



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 120/376 (31%), Positives = 191/376 (50%), Gaps = 3/376 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R F  +P   V + NA++ G   +G G + M LF  M     +F   SLS V    A 
Sbjct: 304 ARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAE 363

Query: 64  S-GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           + GY + GQ VH +AI+ G  +D  ++ +++D+Y KC     A  +F  +K  D V+W A
Sbjct: 364 TKGYFQ-GQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNA 422

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           II  L+Q G   +    FN M    +KP+ F   S+++A         G  +H  + K G
Sbjct: 423 IIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSG 482

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
             SD  V + +V MY + G +    ++ + I  Q  VSWNA+ S F   +  ++  + F 
Sbjct: 483 LGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFS 542

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +ML  G KP+  TF  +L  C++L+ +  GKQ+H   IK  +  +  + ++LVDMY K G
Sbjct: 543 EMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCG 602

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            + D+ + F+ +  +D  ++ A+I  YA  G    AL+ F +M+ E +  N  T  + L 
Sbjct: 603 DMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLR 662

Query: 363 GCSPVATLANG-RLLH 377
            CS V    +G R  H
Sbjct: 663 ACSHVGLFDDGCRYFH 678



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 142/541 (26%), Positives = 254/541 (46%), Gaps = 41/541 (7%)

Query: 91  SLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKP 150
           +++  YS  G    A+ +F  + DPDVV+W A+++   Q+G  QE+  +F  M    V P
Sbjct: 88  TMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSP 147

Query: 151 NQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF 210
           ++     L+++ +   +   G  +HA+  K G E D   G+ALV MY +   +      F
Sbjct: 148 DRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFF 207

Query: 211 EAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVG 270
             +  ++ VSW A  +     E   +GL +F +M   G   +  ++    ++C+++S + 
Sbjct: 208 YGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLN 267

Query: 271 FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
            G+QLHAH IK+    + VVGT++VD+Y K+  L DA  AF  L N  +    A++    
Sbjct: 268 TGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLV 327

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
           +AG    A+  F+ M    I+ +  +L+   + C+       G+ +H +A+K+G  +D+ 
Sbjct: 328 RAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDIC 387

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
           V+ A++ +Y KC ++ +A  +F+G   +D+ SWN +I    ++G  +  +  F  ML  G
Sbjct: 388 VNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFG 447

Query: 451 YVPDEITFVVVLSACSHMGLIEEG-KKHFSSIKKIYG----ITPTIKHFACMIDILGRAG 505
             PD+ T+  VL AC+ +  +E G   H   IK   G    +  T+    C   I+  A 
Sbjct: 448 MKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQ 507

Query: 506 KF-------------------------TEIENFITE---TKLTPNALVWENLLGACSWHG 537
           K                           E + F +E     L P+   +  +L  C+   
Sbjct: 508 KLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLA 567

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPS--DISATQGRWNDFSGVRALLSSQGIKKEPSCS 595
            IEL ++   ++++ E  ++  Y+  +  D+ A  G   D     +LL  + ++K    S
Sbjct: 568 TIELGKQIHGQIIKQE-MLDDEYISSTLVDMYAKCGDMPD-----SLLVFEKVEKRDFVS 621

Query: 596 W 596
           W
Sbjct: 622 W 622



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 178/356 (50%), Gaps = 4/356 (1%)

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           DT+  N +++ Y   G +S    +F+ +   D VSWNAL S +       + + +F +M 
Sbjct: 82  DTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMA 141

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
            +G  P+  TF V+LK+CS+L ++  G Q+HA  +K  L+ +   G++LVDMY K   L+
Sbjct: 142 RRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLD 201

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
           DA   F  +  ++  ++ A I    Q  +    L+ F +M+  G+  ++ + AS    C+
Sbjct: 202 DALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCA 261

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
            ++ L  GR LH+ A+K     D  V TA+V +YAK  S+ DA   F G       + N 
Sbjct: 262 AMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNA 321

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM-GLIEEGKKHFSSIKKI 484
           M+ G V+ GLG +A+  F+ M+      D ++   V SAC+   G  +  + H  +IK  
Sbjct: 322 MMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSG 381

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + +   + +   ++D+ G+     E    I +     +++ W  ++ A   +G+ +
Sbjct: 382 FDVDICVNN--AVLDLYGKCKALME-AYLIFQGMKQKDSVSWNAIIAALEQNGHYD 434



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 109/255 (42%), Gaps = 34/255 (13%)

Query: 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFR--- 343
           N  V   L+ MY +      A   FD++  +D  ++  ++T+Y+ AG+   A+  F    
Sbjct: 51  NAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMP 110

Query: 344 ----------------------------KMRLEGIKSNEFTLASCLNGCSPVATLANGRL 375
                                       +M   G+  +  T A  L  CS +  L+ G  
Sbjct: 111 DPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQ 170

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           +H++AVKTG  +D+   +ALV MY KC S+DDA   F G   R+  SW   I G V++  
Sbjct: 171 VHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQ 230

Query: 436 GEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHF 494
             + LE F  M   G    + ++     +C+ M  +  G++ H  +IK  +     +   
Sbjct: 231 YVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVG-- 288

Query: 495 ACMIDILGRAGKFTE 509
             ++D+  +A   T+
Sbjct: 289 TAIVDVYAKANSLTD 303



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 34/155 (21%)

Query: 381 VKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM-------------- 426
           V +G + + FVS  L+ MYA+C     A  VF     RDT SWN M              
Sbjct: 44  VVSGFVPNAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAV 103

Query: 427 -----------------IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
                            + GY + G+ +++++ F  M   G  PD  TF V+L +CS + 
Sbjct: 104 ALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALE 163

Query: 470 LIEEG-KKHFSSIKKIYGITPTIKHFACMIDILGR 503
            +  G + H  ++K   G+   ++  + ++D+ G+
Sbjct: 164 ELSLGVQVHALAVKT--GLEIDVRTGSALVDMYGK 196


>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 733

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 190/598 (31%), Positives = 323/598 (54%), Gaps = 1/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLKGFA 62
           A+ +F  M   + +SW  L+ GY  + D  + + LF +M      +  +F +S  LK  A
Sbjct: 76  ARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGPQRDQFMISVALKACA 135

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
               I  G+++H  +++ G     F+S +L+DMY K G  +   +VF ++   +VV+W A
Sbjct: 136 LGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTA 195

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           II  L   G   E    F+ M  S V  +       ++A+ ++     G++IH    K G
Sbjct: 196 IIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQG 255

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F+  + V N L +MY + G+  Y  R+FE +   D VSW  L S +      +  +  F 
Sbjct: 256 FDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFK 315

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M      PN  TF  ++ +C++L+   +G+Q+H H ++  L     V  S++ +Y K G
Sbjct: 316 RMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSVANSIITLYSKCG 375

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            L+ A + F  +  KD+ +++ II+ Y+Q G A+ A      MR EG K NEF L+S L+
Sbjct: 376 LLKSASLVFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLS 435

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C  +A L  G+ +H+  +  G   +  V +A+++MY+KCGS+ +A  +F G  + D  S
Sbjct: 436 VCGSMALLEQGKQVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEASKIFNGMKINDIIS 495

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           W  MI GY +HG  ++A+  F  +   G  PD + F+ VL+AC+H G+++ G  +F  + 
Sbjct: 496 WTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVMFIGVLTACNHAGMVDLGFYYFMLMT 555

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
            +Y I+P+ +H+ C+ID+L RAG+ +E E+ I       + +VW  LL AC  HG+++  
Sbjct: 556 NVYRISPSKEHYGCLIDLLCRAGRLSEAEHIIRSMPFHTDDVVWSTLLRACRVHGDVDRG 615

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
              AE+LL+L+P     ++  ++I A +GRW + + +R L+ S+G+ KE   SW+ V+
Sbjct: 616 RWTAEQLLQLDPNSAGTHITLANIYAAKGRWKEAAHIRKLMKSKGVIKERGWSWVNVN 673



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 113/447 (25%), Positives = 210/447 (46%), Gaps = 24/447 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E   RVF+ M   NVVSW A++ G   +G   + +  F  M   +  +   + +  LK 
Sbjct: 175 IEQGCRVFEKMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKA 234

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+S  +  G+ +H   I+ G     F+  +L  MY+KCG  D  +++F +++ PDVV+W
Sbjct: 235 SADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSW 294

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+   Q G  + A + F  MR+S V PN++   +++ +       + GE IH  + +
Sbjct: 295 TTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLR 354

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G  +   V N+++++Y + G +   S VF  I  +D +SW+ + S +       +    
Sbjct: 355 LGLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQGGYAKEAFDY 414

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
              M  +G KPN      +L  C S++ +  GKQ+HAH +   +D   +V ++++ MY K
Sbjct: 415 LSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMVHSAIISMYSK 474

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +++A   F+ +   D+ ++TA+I  YA+ G ++ A+  F K+   G+K +       
Sbjct: 475 CGSVQEASKIFNGMKINDIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVMFIGV 534

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA------------LVAMYAKCGSIDDA 408
           L  C+           H+  V  G    M ++              L+ +  + G + +A
Sbjct: 535 LTACN-----------HAGMVDLGFYYFMLMTNVYRISPSKEHYGCLIDLLCRAGRLSEA 583

Query: 409 EAVFKGSALR-DTASWNMMIGGYVKHG 434
           E + +      D   W+ ++     HG
Sbjct: 584 EHIIRSMPFHTDDVVWSTLLRACRVHG 610



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 159/332 (47%), Gaps = 14/332 (4%)

Query: 151 NQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNAL-----VSMYMENGRVSY 205
           N+++LT      TE     C E I   I +   E+   V N L     +   ++ G++  
Sbjct: 24  NRYILTG---TATE-----CRELIQQPIQEQPAENAYSVHNMLELNSELKQLVKQGQLCK 75

Query: 206 GSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK-GFKPNMCTFIVILKACS 264
              +F+ + H+D +SW  L + + +     + L +F  M +  G + +     V LKAC+
Sbjct: 76  ARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGPQRDQFMISVALKACA 135

Query: 265 SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA 324
              ++ FG+ LH  ++K  L  +  V ++L+DMY K G +E     F+ +  +++ ++TA
Sbjct: 136 LGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTA 195

Query: 325 IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           II     AG     L  F +M    +  +  T A  L   +  + L +G+ +H+  +K G
Sbjct: 196 IIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQG 255

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
                FV   L  MY KCG  D    +F+   + D  SW  +I  YV+ G  E A+EAF+
Sbjct: 256 FDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFK 315

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            M      P++ TF  V+S+C+++   + G++
Sbjct: 316 RMRKSYVSPNKYTFAAVISSCANLAAAKWGEQ 347



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 125/268 (46%), Gaps = 14/268 (5%)

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE-GIKSNEFTLA 358
           K G L  A   FD + ++D  ++T +I  Y  A ++  AL  F  M +  G + ++F ++
Sbjct: 69  KQGQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGPQRDQFMIS 128

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
             L  C+    +  G LLH  +VK+G +  +FVS+AL+ MY K G I+    VF+    R
Sbjct: 129 VALKACALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTR 188

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-H 477
           +  SW  +I G V  G   + L  F  M       D  TF + L A +   L+  GK  H
Sbjct: 189 NVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIH 248

Query: 478 FSSIKKIYGITP-TIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
             +IK+ +  +   I   A M +   + GK   +     + ++ P+ + W  L+      
Sbjct: 249 TQTIKQGFDESSFVINTLATMYN---KCGKPDYVMRLFEKMRM-PDVVSWTTLIST---- 300

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPS 564
             +++ E+  E  +E   +M  +YV P+
Sbjct: 301 -YVQMGEE--EHAVEAFKRMRKSYVSPN 325


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 212/608 (34%), Positives = 340/608 (55%), Gaps = 17/608 (2%)

Query: 7   VFKSM--PELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKF-SKFSLSTVLKGFAN 63
           +F+SM   + +VVS++++++ +A + +  K + +F  +   +  + +++  + V++    
Sbjct: 109 IFQSMENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLK 168

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFL--SCSLVDMYSK-CGLAD--NALKVFYRIKDPDVV 118
            G+ K G  +    ++ G   D  +   C L+DM+ K C LAD  +A KVF ++++ +VV
Sbjct: 169 GGFFKTGLCLFGFVLKTG-YFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVV 227

Query: 119 AWGAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
            W  +IT L Q G   EA  +F  ++  S   P++F LT L+    E      G+ +H+ 
Sbjct: 228 TWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSW 287

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD----YES 233
           + + G   D  VG +LV MY + G V    +VF+ +   + +SW AL + +      YE 
Sbjct: 288 VIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYER 347

Query: 234 PDQGLRIFYQMLLKG-FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
             + +R+F  MLL+G   PN  TF  +LKAC+SL D  FG+Q+H  TIK  L     VG 
Sbjct: 348 --EAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQTIKLGLSAIDCVGN 405

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
            LV +Y KSG +E A   FD L  K+L + T +  +  +           R++   G   
Sbjct: 406 GLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQDLDREVEYVGSGV 465

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
           + FT AS L+G + + T+  G  +H++ VK G   D+ V+ AL++MY+KCG+ + A  VF
Sbjct: 466 SSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVF 525

Query: 413 KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE 472
                 +  +W  +I G+ KHG   KALE F  ML+ G  P+++T++ VLSACSH+GLI+
Sbjct: 526 NDMEDCNVITWTSIINGFAKHGFASKALELFYNMLETGVKPNDVTYIAVLSACSHVGLID 585

Query: 473 EGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
           E  KHF+S++  +GI P ++H+ACM+D+LGR+G  +E   FI       +ALVW   LG+
Sbjct: 586 EAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEAIEFINSMPFDADALVWRTFLGS 645

Query: 533 CSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEP 592
           C  H N +L E  A+ +LE EP   + Y+  S++ AT+GRW D + +R  +  + I KE 
Sbjct: 646 CRVHRNTKLGEHAAKMILEREPHDPATYILLSNLYATEGRWEDVAAIRKNMKQKQITKEA 705

Query: 593 SCSWIEVD 600
             SWIEV+
Sbjct: 706 GSSWIEVE 713



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 127/470 (27%), Positives = 229/470 (48%), Gaps = 13/470 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKF-SKFSLSTVLK 59
           +E A++VF  M E NVV+W  ++   A+ G   + + LF  M         +F+L+ ++ 
Sbjct: 211 LESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLIS 270

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             A   ++  G+ +H+  IR G  LD  + CSLVDMY+KCGL   A KVF  +++ +V++
Sbjct: 271 VCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMS 330

Query: 120 WGAIITCLDQQGCC--QEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
           W A++    + G    +EA ++F N++ +  V PN F  + +++A     D   GE +H 
Sbjct: 331 WTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHG 390

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNAL-FSRFQDYE-SP 234
              K G  +   VGN LVS+Y ++GR+    + F+ +  ++ VS   +  +  +D+  + 
Sbjct: 391 QTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNS 450

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
           +Q L    + +  G      T+  +L   + +  +G G+Q+HA  +K     +  V  +L
Sbjct: 451 EQDLDREVEYVGSGVSS--FTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSVNNAL 508

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           + MY K G  E A   F+ + + ++  +T+II  +A+ G A  AL+ F  M   G+K N+
Sbjct: 509 ISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLETGVKPND 568

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGH--LLDMFVSTALVAMYAKCGSIDDAEAVF 412
            T  + L+ CS V  L +    H  +++  H  +  M     +V +  + G + +A    
Sbjct: 569 VTYIAVLSACSHVG-LIDEAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEAIEFI 627

Query: 413 KGSALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVV 461
                  D   W   +G    H   +    A +M+L E    D  T++++
Sbjct: 628 NSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKMIL-EREPHDPATYILL 676



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 134/532 (25%), Positives = 248/532 (46%), Gaps = 36/532 (6%)

Query: 55  STVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
           S +LK    +     G+++H         LD  L  SL+ +YSK      A  +F  +++
Sbjct: 56  SLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSMEN 115

Query: 115 P--DVVAWGAIITCLDQQGCCQEAAKIFN-LMRESSVKPNQFVLTSLVRATTETGDQRCG 171
              DVV++ +II+C      C +A ++F+ L+ +  V PN++  T+++RA  + G  + G
Sbjct: 116 SKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTG 175

Query: 172 ESIHAVICKYG-FESDTLVGNALVSMYMEN---GRVSYGSRVFEAIAHQDSVSWNALFSR 227
             +   + K G F+S   VG  L+ M+++      +    +VF+ +  ++ V+W  + +R
Sbjct: 176 LCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITR 235

Query: 228 FQDYESPDQGLRIFYQMLL-KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDG 286
              Y   D+ + +F +ML+  G+ P+  T   ++  C+ +  +  GK+LH+  I+  L  
Sbjct: 236 LAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVL 295

Query: 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG---EAEMALKCFR 343
           +  VG SLVDMY K G +++A   FD +   ++ ++TA++  Y + G   E E A++ F 
Sbjct: 296 DLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYERE-AMRMFS 354

Query: 344 KMRLE-GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC 402
            M L+ G+  N FT +  L  C+ +     G  +H   +K G      V   LV++YAK 
Sbjct: 355 NMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQTIKLGLSAIDCVGNGLVSVYAKS 414

Query: 403 GSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVL 462
           G ++ A   F     ++  S  ++    VK        +  R +   G      T+  +L
Sbjct: 415 GRMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQDLDREVEYVGSGVSSFTYASLL 474

Query: 463 SACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGK-------FTEIENFIT 515
           S  + +G I +G++  + + KI G    +     +I +  + G        F ++E+   
Sbjct: 475 SGAACIGTIGKGEQIHAMVVKI-GFRTDLSVNNALISMYSKCGNKEAALQVFNDMED--- 530

Query: 516 ETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
                 N + W +++   + HG        A K LEL   M    V P+D++
Sbjct: 531 -----CNVITWTSIINGFAKHGF-------ASKALELFYNMLETGVKPNDVT 570



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 109/363 (30%), Positives = 188/363 (51%), Gaps = 15/363 (4%)

Query: 134 QEAAKIFNLMRESSVKPNQFVLTSLV-RATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
            +A    NL    S   N+ + +SL+ +    T +   G+ +H  +       DTL+ N+
Sbjct: 33  HKAITTLNLTDTESTHNNKLITSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNS 92

Query: 193 LVSMYMENGRVSYGSRVFEAI--AHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK-GF 249
           L+++Y ++        +F+++  + +D VS++++ S F +  +  + + +F Q+LL+ G 
Sbjct: 93  LITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGV 152

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGTSLVDMYDKSGC----L 304
            PN   F  +++AC        G  L    +K     +HV VG  L+DM+ K GC    L
Sbjct: 153 YPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVK-GCSLADL 211

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL-EGIKSNEFTLASCLNG 363
           E A   FD +  K++  +T +IT  AQ G  + A+  F +M +  G   + FTL   ++ 
Sbjct: 212 ESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISV 271

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +  L+ G+ LHS  +++G +LD+ V  +LV MYAKCG + +A  VF G    +  SW
Sbjct: 272 CAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSW 331

Query: 424 NMMIGGYVKHGLG--EKALEAF-RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFS 479
             ++ GYV+ G G   +A+  F  M+L  G  P+  TF  VL AC+ +   + G++ H  
Sbjct: 332 TALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQ 391

Query: 480 SIK 482
           +IK
Sbjct: 392 TIK 394



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 7/166 (4%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E A +VF  M + NV++W +++NG+A+ G   K + LF +M +   K +  +   VL   
Sbjct: 519 EAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLETGVKPNDVTYIAVLSAC 578

Query: 62  ANSGYI-KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVVA 119
           ++ G I +A +   +M    G          +VD+  + GL   A++    +  D D + 
Sbjct: 579 SHVGLIDEAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEAIEFINSMPFDADALV 638

Query: 120 WGAII-TCLDQQGC--CQEAAKIFNLMRESSVKPNQFVLTSLVRAT 162
           W   + +C   +     + AAK+  L RE    P  ++L S + AT
Sbjct: 639 WRTFLGSCRVHRNTKLGEHAAKMI-LEREPH-DPATYILLSNLYAT 682


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 201/596 (33%), Positives = 325/596 (54%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A RVF+ + +     ++ +L GYA +      +  FC M+    +   ++ + +LK   +
Sbjct: 128 AARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGD 187

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +  ++ G+ +H   I  G A + F    +V+MY+KC L + A K+F R+ + D+V W  I
Sbjct: 188 NADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTI 247

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   Q G  + A ++   M+E   +P+   + S++ A  + G  R G SIH    + GF
Sbjct: 248 ISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGF 307

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           ES   V  ALV MY + G V     +F+ +  +  VSWN++   +     P   + IF +
Sbjct: 308 ESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQK 367

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M+ +  +    T +  L AC+ L DV  G+ +H    +  L  +  V  SL+ MY K   
Sbjct: 368 MMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKR 427

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++ A   F++L +K L ++ A+I  YAQ G    A+  F KM+L+ IK + FT+ S +  
Sbjct: 428 VDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPA 487

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
            + ++ L   + +H + ++T    ++FV+TALV MYAKCG++  A  +F     R   +W
Sbjct: 488 LAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTW 547

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N MI GY  HGLG+ ALE F  M  E   P+E+TF+ VLSACSH GL+EEG ++F S+KK
Sbjct: 548 NAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKK 607

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            YG+ P + H+  M+D+LGRA +  E  +FI +  + P   V+  +LGAC  H N+EL E
Sbjct: 608 DYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVELGE 667

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           K A ++ +L+P     +V  ++I AT   W+  + VR  +  +GI+K P  S +E+
Sbjct: 668 KAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVEL 723



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 117/373 (31%), Positives = 194/373 (52%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A ++F  MPE ++V WN +++GYA++G G+  + L   M++  K+    ++ ++L  
Sbjct: 226 VEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPA 285

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+ G ++ G+ +H  ++R G      +S +LVDMYSKCG    A  +F R+    VV+W
Sbjct: 286 VADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSW 345

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I    Q G    A +IF  M +  V+     +   + A  + GD   G  +H ++ +
Sbjct: 346 NSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQ 405

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
               SD  V N+L+SMY +  RV   + +FE + H+  VSWNA+   +      ++ +  
Sbjct: 406 LELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDY 465

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M L+  KP+  T + ++ A + LS +   K +H   I+  LD N  V T+LVDMY K
Sbjct: 466 FCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAK 525

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +  A   FD +  + +  + A+I  Y   G  + AL+ F KM+ E IK NE T    
Sbjct: 526 CGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCV 585

Query: 361 LNGCSPVATLANG 373
           L+ CS    +  G
Sbjct: 586 LSACSHSGLVEEG 598



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 193/400 (48%)

Query: 76  MAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQE 135
           + I+ G   +      LV ++ K G    A +VF  I+D     +  ++    +     +
Sbjct: 99  LIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDD 158

Query: 136 AAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVS 195
           A   F  MR   V+P  +  T L++   +  D R G+ IH  +   GF S+      +V+
Sbjct: 159 AVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVN 218

Query: 196 MYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCT 255
           MY +   V    ++F+ +  +D V WN + S +         L +  +M  +G +P+  T
Sbjct: 219 MYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSIT 278

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
            + IL A + +  +  G+ +H ++++   +    V T+LVDMY K G +  A + FD + 
Sbjct: 279 IVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMT 338

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRL 375
            K + ++ ++I  Y Q G+   A++ F+KM  E ++    T+   L+ C+ +  +  GR 
Sbjct: 339 GKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRF 398

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           +H +  +     D+ V  +L++MY+KC  +D A  +F+    +   SWN MI GY ++G 
Sbjct: 399 VHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGR 458

Query: 436 GEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
             +A++ F  M  +   PD  T V V+ A + + ++ + K
Sbjct: 459 INEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAK 498


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 203/605 (33%), Positives = 333/605 (55%), Gaps = 4/605 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKK---FSKFSLSTV 57
           +E A +VF++M   N+VSWN+++   +E+G   +   +F  +   E++       ++ TV
Sbjct: 246 VESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTV 305

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
           +   A  G ++ G VVH +A +LG   +  ++ SLVDMYSKCG    A  +F      +V
Sbjct: 306 IPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNV 365

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLM-RESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
           V+W  II    ++G  +   ++   M RE  V+ N+  + +++ A +        + IH 
Sbjct: 366 VSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHG 425

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
              ++GF  D LV NA V+ Y +   +    RVF  +  +   SWNAL         P +
Sbjct: 426 YAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGK 485

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            L +F  M+  G  P+  T   +L AC+ L  +  GK++H   +++ L+ +  +G SL+ 
Sbjct: 486 SLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMS 545

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           +Y +   +    + FD + NK L  +  +IT ++Q      AL  FR+M   GIK  E  
Sbjct: 546 LYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIA 605

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
           +   L  CS V+ L  G+ +HS A+K     D FV+ AL+ MYAKCG ++ ++ +F    
Sbjct: 606 VTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVN 665

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            +D A WN++I GY  HG G KA+E F +M ++G  PD  TF+ VL AC+H GL+ EG K
Sbjct: 666 EKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLK 725

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
           +   ++ +YG+ P ++H+AC++D+LGRAG+ TE    + E    P++ +W +LL +C  +
Sbjct: 726 YLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNY 785

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSW 596
           G++E+ E+ ++KLLELEP    NYV  S++ A  G+W++   VR  +   G+ K+  CSW
Sbjct: 786 GDLEIGEEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSW 845

Query: 597 IEVDG 601
           IE+ G
Sbjct: 846 IEIGG 850



 Score =  218 bits (554), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 140/477 (29%), Positives = 244/477 (51%), Gaps = 14/477 (2%)

Query: 49  FSKFSLSTVLKGFANSGYIKAGQVVHAM-AIRLGCALDKFLSCSLVDMYSKCGLADNALK 107
            SK ++  +L+   +   I  G+ VHA+ +       D  LS  ++ MYS CG   ++  
Sbjct: 90  ISKEAIGILLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRG 149

Query: 108 VFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETG 166
           VF   K+ D+  + A+++   +    ++A  +F  L+  + + P+ F L  + +A     
Sbjct: 150 VFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVA 209

Query: 167 DQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS 226
           D   GE++HA+  K G  SD  VGNAL++MY + G V    +VFE + +++ VSWN++  
Sbjct: 210 DVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMY 269

Query: 227 RFQDYESPDQGLRIFYQMLL---KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS 283
              +     +   +F ++L+   +G  P++ T + ++ AC+++ +V  G  +H    K  
Sbjct: 270 ACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLG 329

Query: 284 LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFR 343
           +     V  SLVDMY K G L +A   FD    K++ ++  II  Y++ G+     +  +
Sbjct: 330 ITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQ 389

Query: 344 KM-RLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC 402
           +M R E ++ NE T+ + L  CS    L + + +H  A + G L D  V+ A VA YAKC
Sbjct: 390 EMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKC 449

Query: 403 GSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVL 462
            S+D AE VF G   +  +SWN +IG + ++G   K+L+ F +M+D G  PD  T   +L
Sbjct: 450 SSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLL 509

Query: 463 SACSHMGLIEEGK-------KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIEN 512
            AC+ +  +  GK       ++   + +  GI+    +  C   +LG+   F ++EN
Sbjct: 510 LACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKL-IFDKMEN 565



 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 144/553 (26%), Positives = 265/553 (47%), Gaps = 19/553 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLKGFA 62
           ++ VF +  E ++  +NALL+GY+ +   +  + LF  +    +     F+L  V K  A
Sbjct: 147 SRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACA 206

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
               ++ G+ VHA+A++ G   D F+  +L+ MY KCG  ++A+KVF  +++ ++V+W +
Sbjct: 207 GVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNS 266

Query: 123 IITCLDQQGCCQEAAKIFNLM---RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           ++    + G   E   +F  +    E  + P+   + +++ A    G+ R G  +H +  
Sbjct: 267 VMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAF 326

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K G   +  V N+LV MY + G +     +F+    ++ VSWN +   +    S +   R
Sbjct: 327 KLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGY----SKEGDFR 382

Query: 240 IFYQMLL-----KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
             +++L      +  + N  T + +L ACS    +   K++H +  +H    + +V  + 
Sbjct: 383 GVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAF 442

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           V  Y K   L+ A   F  +  K + ++ A+I ++AQ G    +L  F  M   G+  + 
Sbjct: 443 VAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDR 502

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
           FT+ S L  C+ +  L  G+ +H   ++ G  LD F+  +L+++Y +C S+   + +F  
Sbjct: 503 FTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDK 562

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
              +    WN+MI G+ ++ L  +AL+ FR ML  G  P EI    VL ACS +  +  G
Sbjct: 563 MENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLG 622

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
           K+  S   K + ++        +ID+  + G   + +N          A VW  ++    
Sbjct: 623 KEVHSFALKAH-LSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEA-VWNVIIAGYG 680

Query: 535 WHGN----IELDE 543
            HG+    IEL E
Sbjct: 681 IHGHGLKAIELFE 693



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 139/288 (48%), Gaps = 7/288 (2%)

Query: 258 VILKACSSLSDVGFGKQLHAH-TIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
           ++L+AC    ++  G+++HA  +  H L  + V+ T ++ MY   G   D+   FD+   
Sbjct: 97  ILLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKE 156

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFTLASCLNGCSPVATLANGRL 375
           KDLF Y A+++ Y++      A+  F ++     +  + FTL      C+ VA +  G  
Sbjct: 157 KDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEA 216

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           +H++A+K G   D FV  AL+AMY KCG ++ A  VF+    R+  SWN ++    ++G 
Sbjct: 217 VHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGG 276

Query: 436 GEKALEAFRMML---DEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK 492
             +    F+ +L   +EG VPD  T V V+ AC+ +G +  G        K+ GIT  + 
Sbjct: 277 FGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKL-GITEEVT 335

Query: 493 HFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
               ++D+  + G   E      +     N + W  ++   S  G+  
Sbjct: 336 VNNSLVDMYSKCGYLGEARALF-DMNGGKNVVSWNTIIWGYSKEGDFR 382


>gi|20146226|dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
 gi|125573391|gb|EAZ14906.1| hypothetical protein OsJ_04836 [Oryza sativa Japonica Group]
          Length = 785

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 191/604 (31%), Positives = 332/604 (54%), Gaps = 8/604 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R+   MP  N VS+N L++ Y+  G     +      +       +FS +  L   + 
Sbjct: 62  ARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRAGVDVDRFSYAAALAACSR 121

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +G+++AG+ VHA+AI  G +   F+S SLV MYSKCG    A +VF   ++ D V+W ++
Sbjct: 122 AGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSL 181

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD--QRCGESIHAVICKY 181
           ++   + G  +E  ++F +MR   +  N F L S+++  +  GD      E++H  + K 
Sbjct: 182 VSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKA 241

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES------PD 235
           G +SD  + +A++ MY + G +   + +F ++   + V +N + + F   E+        
Sbjct: 242 GLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVAS 301

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
           + L ++ ++  +G +P   TF  +L+AC+    + FGKQ+H   IK++   +  +G++L+
Sbjct: 302 EALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALI 361

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
           D+Y  SGC+ED    F S    D+  +TA+++   Q    E AL  F +    G+K + F
Sbjct: 362 DLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLF 421

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
           T++S +N C+ +A    G  +   A K+G      +  + V MYA+ G +D A   F+  
Sbjct: 422 TISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEM 481

Query: 416 ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
              D  SW+ +I  + +HG    AL  F  M+D   VP+EITF+ VL+ACSH GL++EG 
Sbjct: 482 ESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGL 541

Query: 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
           +++ ++ K YG++PTIKH  C++D+LGRAG+  + E FI+ +    + ++W +LL +C  
Sbjct: 542 RYYETMTKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNSIFHADPVIWRSLLASCRI 601

Query: 536 HGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCS 595
           H ++E  +  A +++ELEP   ++YV   ++    G  +  S  R L+  +G+KKEP  S
Sbjct: 602 HRDLERGQLVANRIMELEPTSSASYVILYNMYLDAGELSLASKTRDLMKQRGVKKEPGLS 661

Query: 596 WIEV 599
           WIE+
Sbjct: 662 WIEL 665



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 123/503 (24%), Positives = 222/503 (44%), Gaps = 53/503 (10%)

Query: 87  FLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRES 146
           FL  +L+  Y + G    A ++   +   + V++  +I    ++G    + +     R +
Sbjct: 44  FLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRA 103

Query: 147 SVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYG 206
            V  ++F   + + A +  G  R G ++HA+    G  S   V N+LVSMY + G +   
Sbjct: 104 GVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEA 163

Query: 207 SRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266
            RVF+    +D VSWN+L S +    + ++ +R+F  M   G   N      ++K CS  
Sbjct: 164 RRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGR 223

Query: 267 SD--VGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA 324
            D  +   + +H   IK  LD +  + ++++DMY K G L +A   F S+   ++  +  
Sbjct: 224 GDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNT 283

Query: 325 IITSYAQAGE------AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHS 378
           +I  + +         A  AL  + +++  G++  EFT +S L  C+    L  G+ +H 
Sbjct: 284 MIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHG 343

Query: 379 IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEK 438
             +K     D F+ +AL+ +Y   G ++D    F+ S   D  +W  M+ G V++ L EK
Sbjct: 344 QVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEK 403

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACM- 497
           AL  F   L  G  PD  T   V++AC+ + +   G++      + +        F  M 
Sbjct: 404 ALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQ-----IQCFATKSGFDRFTVMG 458

Query: 498 ---IDILGRAG-------KFTEIENF---------------------------ITETKLT 520
              + +  R+G       +F E+E+                            + + K+ 
Sbjct: 459 NSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVV 518

Query: 521 PNALVWENLLGACSWHGNIELDE 543
           PN + +  +L ACS HG + +DE
Sbjct: 519 PNEITFLGVLTACS-HGGL-VDE 539



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 134/281 (47%), Gaps = 11/281 (3%)

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
            +L+  Y + G    A    D +  ++  ++  +I +Y++ G A ++L+   + R  G+ 
Sbjct: 47  NTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRAGVD 106

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            + F+ A+ L  CS    L  GR +H++A+  G    +FVS +LV+MY+KCG + +A  V
Sbjct: 107 VDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRV 166

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG-- 469
           F  +  RD  SWN ++ GYV+ G  E+ +  F MM   G   +      V+  CS  G  
Sbjct: 167 FDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDG 226

Query: 470 --LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWE 527
              I E   H   IK   G+   +   + MID+  + G   E        +  PN +++ 
Sbjct: 227 TMDIAEA-VHGCVIKA--GLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQ-EPNVVMFN 282

Query: 528 NLL-GACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            ++ G C     I   ++ A + L L  +++S  + P++ +
Sbjct: 283 TMIAGFCRTETVI--GKEVASEALTLYSEVQSRGMQPTEFT 321



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 118/241 (48%), Gaps = 6/241 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME   R F+S P+ ++V+W A+++G  ++   +K + LF        K   F++S+V+  
Sbjct: 370 MEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNA 429

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKF--LSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
            A+    +AG+ +   A + G   D+F  +  S V MY++ G  D A + F  ++  DVV
Sbjct: 430 CASLAVARAGEQIQCFATKSG--FDRFTVMGNSCVHMYARSGDVDAATRRFQEMESHDVV 487

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +W A+I+C  Q GC ++A   F+ M ++ V PN+     ++ A +  G    G   +  +
Sbjct: 488 SWSAVISCHAQHGCARDALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYYETM 547

Query: 179 CK-YGFESDTLVGNALVSMYMENGRVSYGSR-VFEAIAHQDSVSWNALFSRFQDYESPDQ 236
            K YG          +V +    GR++     +  +I H D V W +L +  + +   ++
Sbjct: 548 TKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNSIFHADPVIWRSLLASCRIHRDLER 607

Query: 237 G 237
           G
Sbjct: 608 G 608


>gi|326515658|dbj|BAK07075.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 796

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 188/605 (31%), Positives = 338/605 (55%), Gaps = 9/605 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFC-SMKDMEKKFSKFSLSTVLKGFA 62
           A+R+   MP  N VS+N L++ Y+ +G  +  +  F  + +    +  +F+ +  L   +
Sbjct: 66  ARRLLDEMPRTNAVSFNLLIDAYSRAGQPEASLETFARARRSAGVRADRFTYAAALAACS 125

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
            +G ++ G+ VHA+++  G A   F+S SLV MY++CG    A +VF    + D V+W A
Sbjct: 126 RAGRLREGKAVHALSVLEGIAGGVFVSNSLVSMYARCGDMGQARQVFDAADERDDVSWNA 185

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD--QRCGESIHAVICK 180
           +++   + G   +  ++F +MR S +  N F L S+++    + D       ++H  + K
Sbjct: 186 LVSGYVRAGAQDDMLRVFAMMRRSGIGLNSFALGSVIKCCAGSDDPVMDIAAAVHGCVVK 245

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP------ 234
            GF+SD  + +A+V MY + G +S    +F+++   + V +NA+ +     E+       
Sbjct: 246 AGFDSDVFLASAMVGMYAKKGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVGTDVL 305

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
            + L ++ ++  +G +P   TF  +++AC+   D+ FGKQ+H   +KH   G+  +G++L
Sbjct: 306 REALSLYSEVQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSAL 365

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           +D+Y  SGC+ED    F S+  +D+  +TA+I+   Q    E AL  F ++   G+K + 
Sbjct: 366 IDLYLNSGCMEDGFRCFTSVPKQDVVTWTAMISGCVQNELFERALTLFHELLGAGLKPDP 425

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
           FT++S +N C+ +A    G  +   A K+G      +  + + MYA+ G +  A   F+ 
Sbjct: 426 FTISSVMNACASLAVARTGEQIQCFATKSGFGRFTAMGNSCIHMYARSGDVHAAVRRFQE 485

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
               D  SW+ +I  + +HG    AL  F  M+D   VP+EITF+ VL+ACSH GL++EG
Sbjct: 486 MESHDIVSWSAVISSHAQHGCARDALRFFNEMVDAKVVPNEITFLGVLTACSHGGLVDEG 545

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
            K++ ++K+ Y ++PTIKH  C++D+LGRAG+  + E FI ++      ++W +LL +C 
Sbjct: 546 LKYYETMKEEYALSPTIKHCTCVVDLLGRAGRLADAEAFIRDSIFHDEPVIWRSLLASCR 605

Query: 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSC 594
            H ++E  +  A++++EL+P   ++YV   +I    G  +  S +R ++  +G+KKEP  
Sbjct: 606 IHRDMERGQLVADRIMELQPSSSASYVNLYNIYLDAGELSLASKIRDVMKERGVKKEPGL 665

Query: 595 SWIEV 599
           SWIE+
Sbjct: 666 SWIEL 670



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 133/458 (29%), Positives = 232/458 (50%), Gaps = 13/458 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A++VF +  E + VSWNAL++GY  +G    ++ +F  M+      + F+L +V+K 
Sbjct: 165 MGQARQVFDAADERDDVSWNALVSGYVRAGAQDDMLRVFAMMRRSGIGLNSFALGSVIKC 224

Query: 61  FANSG--YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
            A S    +     VH   ++ G   D FL+ ++V MY+K G    A+ +F  + DP+VV
Sbjct: 225 CAGSDDPVMDIAAAVHGCVVKAGFDSDVFLASAMVGMYAKKGALSEAVALFKSVLDPNVV 284

Query: 119 AWGAIIT--CLDQQG----CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172
            + A+I   C D+        +EA  +++ ++   ++P +F  +S++RA    GD   G+
Sbjct: 285 VFNAMIAGLCRDEAAVGTDVLREALSLYSEVQSRGMEPTEFTFSSVIRACNLAGDIEFGK 344

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
            IH  + K+ F+ D  +G+AL+ +Y+ +G +  G R F ++  QD V+W A+ S     E
Sbjct: 345 QIHGQVLKHCFQGDDFIGSALIDLYLNSGCMEDGFRCFTSVPKQDVVTWTAMISGCVQNE 404

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
             ++ L +F+++L  G KP+  T   ++ AC+SL+    G+Q+     K        +G 
Sbjct: 405 LFERALTLFHELLGAGLKPDPFTISSVMNACASLAVARTGEQIQCFATKSGFGRFTAMGN 464

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           S + MY +SG +  A   F  + + D+ +++A+I+S+AQ G A  AL+ F +M    +  
Sbjct: 465 SCIHMYARSGDVHAAVRRFQEMESHDIVSWSAVISSHAQHGCARDALRFFNEMVDAKVVP 524

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS--TALVAMYAKCGSIDDAEA 410
           NE T    L  CS    +  G L +   +K  + L   +   T +V +  + G + DAEA
Sbjct: 525 NEITFLGVLTACSHGGLVDEG-LKYYETMKEEYALSPTIKHCTCVVDLLGRAGRLADAEA 583

Query: 411 VFKGSALRDTAS-WNMMIGGYVKHGLGEKA-LEAFRMM 446
             + S   D    W  ++     H   E+  L A R+M
Sbjct: 584 FIRDSIFHDEPVIWRSLLASCRIHRDMERGQLVADRIM 621


>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Vitis vinifera]
          Length = 755

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 200/598 (33%), Positives = 327/598 (54%), Gaps = 2/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF +MPE NVVSW +++ GY+++G G   +  +  M        +F+  +++K  ++
Sbjct: 117 AQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSS 176

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G I  G+ +HA  ++           +L+ MY+K  L  +AL VF R+   D+++WG++
Sbjct: 177 LGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSM 236

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVK-PNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I    Q G   EA   F  M    V  PN+F+  S+  A +       G  +H +  K+G
Sbjct: 237 IAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFG 296

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
              D   G +L  MY + G +S    VF  I   D V+WNA+ + F       + +  F 
Sbjct: 297 LGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFS 356

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           QM  +G  P+  T   +L AC+S S++  G Q+H +  K  LD +  V  +L+ MY K  
Sbjct: 357 QMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCS 416

Query: 303 CLEDAGVAFDSL-ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
            L DA   F+ +  N DL ++ AI+T+  +  +AE   +  + M +   + +  TL + L
Sbjct: 417 ELRDAIFFFEEMRCNADLVSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVL 476

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
              +   ++  G  +H  A+KTG   D  V+  L+ +YAKCGS+  A  +F      D  
Sbjct: 477 GASAETVSIEIGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVV 536

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SW+ +I GY + G GE+AL+ F+ M      P+ +TFV VL+ACSH+GL+EEG K + ++
Sbjct: 537 SWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTM 596

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
           +K +GI PT +H +CM+D+L RAG   E E FI +    P+ +VW+ LL AC  HGN+++
Sbjct: 597 EKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDV 656

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            ++ AE +L+++P   + +V   +I A++G W D + +R+L+  +G++K P  SWIEV
Sbjct: 657 GKRAAENILKIDPSNSAAHVLLCNIYASKGNWEDVARLRSLMKQRGVRKVPGQSWIEV 714



 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 160/548 (29%), Positives = 260/548 (47%), Gaps = 28/548 (5%)

Query: 52  FSLSTVLKGFANSGYIKA---GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKV 108
            +LST     +   Y+++   G+ +H   ++     D  L   +++MY KC    +A KV
Sbjct: 61  LTLSTYAYLISACSYLRSLEHGKKIHDHMLKSKSHPDLTLQNHILNMYGKCKSLKDAQKV 120

Query: 109 FYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ 168
           F  + + +VV+W ++I    Q G    A + +  M +S V P+QF   S+++A +  GD 
Sbjct: 121 FDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDI 180

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228
             G  +HA + K  F +  +  NAL+SMY ++  +     VF  +A +D +SW ++ + F
Sbjct: 181 GLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGF 240

Query: 229 QDYESPDQGLRIFYQMLLKG-FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGN 287
                  + L  F +ML +G + PN   F  +  ACSSL    +G+QLH  +IK  L  +
Sbjct: 241 SQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRD 300

Query: 288 HVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL 347
              G SL DMY K G L  A V F  +   DL A+ AII  +A  G+A+ A+  F +MR 
Sbjct: 301 VFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRH 360

Query: 348 EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
           +G+  +E T+ S L  C+  + L  G  +H    K G  LD+ V   L+ MYAKC  + D
Sbjct: 361 QGLIPDEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRD 420

Query: 408 AEAVFKGSALR---DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
             A+F    +R   D  SWN ++   ++H   E+     ++M    + PD IT   VL A
Sbjct: 421 --AIFFFEEMRCNADLVSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGA 478

Query: 465 CSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNA 523
            +    IE G + H  ++K   G+         +ID+  + G        I ++ + P+ 
Sbjct: 479 SAETVSIEIGNQVHCYALKT--GLNCDTSVTNGLIDLYAKCGSLKTAHK-IFDSMINPDV 535

Query: 524 LVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALL 583
           + W +L+   +  G         E+ L+L   M    V P+ ++        F GV    
Sbjct: 536 VSWSSLILGYAQFGY-------GEEALKLFKTMRRLDVKPNHVT--------FVGVLTAC 580

Query: 584 SSQGIKKE 591
           S  G+ +E
Sbjct: 581 SHVGLVEE 588



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 125/423 (29%), Positives = 205/423 (48%), Gaps = 11/423 (2%)

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLT-----SLVRATTETGDQRCGESIHAVI 178
           IT L +Q    EA K F  ++    K   F LT      L+ A +       G+ IH  +
Sbjct: 34  ITSLCKQKLFNEAIKAFEFLQ----KKTGFCLTLSTYAYLISACSYLRSLEHGKKIHDHM 89

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K     D  + N +++MY +   +    +VF+A+  ++ VSW ++ + +         L
Sbjct: 90  LKSKSHPDLTLQNHILNMYGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNAL 149

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
             ++QML  G  P+  TF  I+KACSSL D+G G+QLHAH +K     + +   +L+ MY
Sbjct: 150 EFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMY 209

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK-SNEFTL 357
            KS  + DA   F  +A +DL ++ ++I  ++Q G    AL  F++M  +G+   NEF  
Sbjct: 210 TKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIF 269

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
            S  + CS +     GR LH +++K G   D+F   +L  MYAKCG +  A  VF     
Sbjct: 270 GSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGR 329

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
            D  +WN +I G+   G  ++A+  F  M  +G +PDEIT   +L AC+    + +G + 
Sbjct: 330 PDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQV 389

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
              I K+ G+   +     ++ +  +  +  +   F  E +   + + W  +L AC  H 
Sbjct: 390 HGYINKM-GLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMRHD 448

Query: 538 NIE 540
             E
Sbjct: 449 QAE 451



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 161/322 (50%), Gaps = 12/322 (3%)

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           GF   + T+  ++ ACS L  +  GK++H H +K     +  +   +++MY K   L+DA
Sbjct: 58  GFCLTLSTYAYLISACSYLRSLEHGKKIHDHMLKSKSHPDLTLQNHILNMYGKCKSLKDA 117

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367
              FD++  +++ ++T++I  Y+Q G+   AL+ + +M   G+  ++FT  S +  CS +
Sbjct: 118 QKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSL 177

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
             +  GR LH+  +K+     +    AL++MY K   I DA  VF   A RD  SW  MI
Sbjct: 178 GDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMI 237

Query: 428 GGYVKHGLGEKALEAFRMMLDEG-YVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIY 485
            G+ + G   +AL  F+ ML +G Y+P+E  F  V SACS +   E G++ H  SIK  +
Sbjct: 238 AGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIK--F 295

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKD 545
           G+   +     + D+  + G  +       +    P+ + W  ++   ++ G       D
Sbjct: 296 GLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIG-RPDLVAWNAIIAGFAYGG-------D 347

Query: 546 AEKLLELEPKMESNYVFPSDIS 567
           A++ +    +M    + P +I+
Sbjct: 348 AKEAIAFFSQMRHQGLIPDEIT 369



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 169/340 (49%), Gaps = 3/340 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A+ VF  +   ++V+WNA++ G+A  GD ++ +  F  M+       + ++ ++L  
Sbjct: 317 LSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCA 376

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVVA 119
             +   +  G  VH    ++G  LD  +  +L+ MY+KC    +A+  F  ++ + D+V+
Sbjct: 377 CTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVS 436

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W AI+T   +    +E  ++  LM  S  +P+   LT+++ A+ ET     G  +H    
Sbjct: 437 WNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYAL 496

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K G   DT V N L+ +Y + G +    ++F+++ + D VSW++L   +  +   ++ L+
Sbjct: 497 KTGLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALK 556

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKH-SLDGNHVVGTSLVDMY 298
           +F  M     KPN  TF+ +L ACS +  V  G +L+    K   +       + +VD+ 
Sbjct: 557 LFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLL 616

Query: 299 DKSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEM 337
            ++GCL +A      +A + D+  +  ++ +    G  ++
Sbjct: 617 ARAGCLNEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDV 656


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 193/549 (35%), Positives = 311/549 (56%), Gaps = 2/549 (0%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
           L+ +L+  + +G    G  VHA A+ +G   D  ++  L+DMY KC   D A  VF R+ 
Sbjct: 7   LAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRML 66

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES 173
           + +VV+W A++    Q+G  + +  +   M  S VKPN+F  ++ ++A    G    G  
Sbjct: 67  ERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQ 126

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           IH +  K GFE  ++VGNA + MY + GR+    +VF  +  ++ VSWNA+ +      +
Sbjct: 127 IHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGN 186

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS--LDGNHVVG 291
             + L +F +M  +G  P+  TF   LKAC +L  +  G Q+HA  I     +   +++ 
Sbjct: 187 GRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIA 246

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
           +++VD+Y K G L +A   FD +  K+L +++A+I  +AQ G    A+  FR++R     
Sbjct: 247 SAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSN 306

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            + F L+  +   + +A +  G+ +H   +K    LD+ V+ +++ MY KCG  ++AE +
Sbjct: 307 VDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGLTEEAERL 366

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F    +R+  SW +MI GY KHGLGEKA+  F  M  +G   DE+ ++ +LSACSH GLI
Sbjct: 367 FSEMQVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACSHSGLI 426

Query: 472 EEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLG 531
            E +++FS +   + + P I+H+ACM+DILGRAG+  E +N I   KL PN  +W+ LL 
Sbjct: 427 RESQEYFSRLCNNHQMKPNIEHYACMVDILGRAGQLKEAKNLIENMKLKPNEGIWQTLLS 486

Query: 532 ACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
           AC  HGN+E+  +  E L  ++     NYV  S+I A  G W +   VR L+ ++G+KKE
Sbjct: 487 ACRVHGNLEIGREVGEILFRMDTDNPVNYVMMSNIYAEAGYWKECERVRKLVKAKGLKKE 546

Query: 592 PSCSWIEVD 600
              SW+E++
Sbjct: 547 AGQSWVEIN 555



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 125/458 (27%), Positives = 224/458 (48%), Gaps = 12/458 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++LA  VF  M E NVVSW AL+ GY + G+ +  + L C M     K ++F+ ST LK 
Sbjct: 55  VDLACSVFDRMLERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKA 114

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
               G ++ G  +H M ++ G      +  + +DMYSKCG    A +VF ++   ++V+W
Sbjct: 115 CGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSW 174

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I     +G  +++  +F  M+     P++F  TS ++A    G  R G  IHA +  
Sbjct: 175 NAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLIT 234

Query: 181 YGFESD--TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            GF      ++ +A+V +Y + G +    +VF+ I  ++ +SW+AL   F    +  + +
Sbjct: 235 RGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAM 294

Query: 239 RIFYQMLLKGFKPNMCTFI--VILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            +F Q  L+    N+  F+  +++   + L+ V  GKQ+H + +K     +  V  S++D
Sbjct: 295 DLFRQ--LRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVANSIID 352

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           MY K G  E+A   F  +  +++ ++T +IT Y + G  E A+  F +M+L+GI+ +E  
Sbjct: 353 MYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVA 412

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA-LVAMYAKCGSIDDAEAVFKGS 415
             + L+ CS    +   +   S       +       A +V +  + G + +A+ + +  
Sbjct: 413 YLALLSACSHSGLIRESQEYFSRLCNNHQMKPNIEHYACMVDILGRAGQLKEAKNLIENM 472

Query: 416 ALR-DTASWNMMIGGYVKHGLGEKALEA----FRMMLD 448
            L+ +   W  ++     HG  E   E     FRM  D
Sbjct: 473 KLKPNEGIWQTLLSACRVHGNLEIGREVGEILFRMDTD 510


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 201/582 (34%), Positives = 313/582 (53%), Gaps = 2/582 (0%)

Query: 22  LLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLG 81
           L+  Y ++        ++  M+  + +   F + +VLK          GQ VH   ++ G
Sbjct: 95  LITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNG 154

Query: 82  CALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFN 141
              D F+  +L+ MYS+ G    A  +F +I++ DVV+W  +I   D+ G   EA  +  
Sbjct: 155 FHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLR 214

Query: 142 LMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF--ESDTLVGNALVSMYME 199
            M    VKP++  + S+     E  D + G+++HA + + G   +S   +  AL+ MY++
Sbjct: 215 DMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVK 274

Query: 200 NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVI 259
              ++Y  RVF+ ++    +SW A+ + +    + ++G+R+F +ML +G  PN  T + +
Sbjct: 275 CENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSL 334

Query: 260 LKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL 319
           +K C +   +  GK LHA T+++    + V+ T+ +DMY K G +  A   FDS  +KDL
Sbjct: 335 VKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDL 394

Query: 320 FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSI 379
             ++A+I+SYAQ    + A   F  M   GI+ NE T+ S L  C+   +L  G+ +HS 
Sbjct: 395 MMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSY 454

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
             K G   DM + T+ V MYA CG ID A  +F  +  RD + WN MI G+  HG GE A
Sbjct: 455 IDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAA 514

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMID 499
           LE F  M   G  P++ITF+  L ACSH GL++EGK+ F  +   +G TP ++H+ CM+D
Sbjct: 515 LELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVD 574

Query: 500 ILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESN 559
           +LGRAG   E    I    + PN  V+ + L AC  H NI+L E  A++ L LEP     
Sbjct: 575 LLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGY 634

Query: 560 YVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
            V  S+I A+  RW D + +R  +  +GI KEP  S IEV+G
Sbjct: 635 NVLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNG 676



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 113/421 (26%), Positives = 196/421 (46%), Gaps = 3/421 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + LA+ +F  +   +VVSW+ ++  Y  SG   + + L   M  M  K S+  + ++   
Sbjct: 175 LALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISITHV 234

Query: 61  FANSGYIKAGQVVHAMAIRLG-CALDKFLSCS-LVDMYSKCGLADNALKVFYRIKDPDVV 118
            A    +K G+ +HA  +R G C       C+ L+DMY KC     A +VF  +    ++
Sbjct: 235 LAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASII 294

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +W A+I          E  ++F  M    + PN+  + SLV+     G    G+ +HA  
Sbjct: 295 SWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFT 354

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            + GF    ++  A + MY + G V     VF++   +D + W+A+ S +      D+  
Sbjct: 355 LRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAF 414

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            IF  M   G +PN  T + +L  C+    +  GK +H++  K  + G+ ++ TS VDMY
Sbjct: 415 DIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMY 474

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
              G ++ A   F    ++D+  + A+I+ +A  G  E AL+ F +M   G+  N+ T  
Sbjct: 475 ANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFI 534

Query: 359 SCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
             L+ CS    L  G RL H +  + G    +     +V +  + G +D+A  + K   +
Sbjct: 535 GALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPM 594

Query: 418 R 418
           R
Sbjct: 595 R 595


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 197/597 (32%), Positives = 328/597 (54%), Gaps = 2/597 (0%)

Query: 4   AKRVFKSM-PELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           A RVF+ +  +LNV+ +  +L G+A+  D  K +  F  M+D E +   ++ + +LK   
Sbjct: 88  AARVFEPIDKKLNVLYYT-MLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCG 146

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           +   ++ G+ +H + ++ G +LD F    L +MY+KC     A KVF R+ + D+V+W  
Sbjct: 147 DEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNT 206

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I+    Q G  + A ++ NLM E ++KP+   + S++ A +     R G+ IH    + G
Sbjct: 207 IVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAG 266

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F+S   +  ALV MY + G +     +F+ +  ++ VSWN++   +   E+P + + IF 
Sbjct: 267 FDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQ 326

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +ML +G KP   + +  L AC+ L D+  G+ +H  +++  LD N  V  SL+ MY K  
Sbjct: 327 KMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCK 386

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            ++ A   F  L ++ + ++ A+I  +AQ G    AL  F +M+   +K + FT  S + 
Sbjct: 387 EVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVIT 446

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
             + ++   + + +H + ++     ++FV+TALV MYAKCG+I  A  +F   + R   +
Sbjct: 447 AIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTT 506

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN MI GY  HG+G+ ALE F  M      P+ +TF+ V+SACSH GL+E G K F  +K
Sbjct: 507 WNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMK 566

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           + Y I P++ H+  M+D+LGRAG+  E  +FI +  + P   V+  +LGAC  H N+   
Sbjct: 567 ENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFA 626

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           EK AE+L EL P+    +V  ++I      W     VR  +  QG++K P CS +E+
Sbjct: 627 EKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEI 683



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 159/313 (50%), Gaps = 5/313 (1%)

Query: 168 QRCG-----ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWN 222
           +RC        I  +I K G   + L    LVS++   G V   +RVFE I  + +V + 
Sbjct: 45  ERCSSLKELRHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYY 104

Query: 223 ALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKH 282
            +   F      D+ L+ F +M     +P +  F  +LK C   +++  GK++H   +K 
Sbjct: 105 TMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKS 164

Query: 283 SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCF 342
               +    T L +MY K   + +A   FD +  +DL ++  I+  Y+Q G A MAL+  
Sbjct: 165 GFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMV 224

Query: 343 RKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC 402
             M  E +K +  T+ S L   S +  +  G+ +H  A++ G    + ++TALV MYAKC
Sbjct: 225 NLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKC 284

Query: 403 GSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVL 462
           GS+  A  +F G   R+  SWN MI  YV++   ++A+  F+ MLDEG  P +++ +  L
Sbjct: 285 GSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGAL 344

Query: 463 SACSHMGLIEEGK 475
            AC+ +G +E G+
Sbjct: 345 HACADLGDLERGR 357



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 158/310 (50%), Gaps = 5/310 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+ +F  M E NVVSWN++++ Y ++ + ++ M +F  M D   K +  S+   L  
Sbjct: 287 LKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHA 346

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSC--SLVDMYSKCGLADNALKVFYRIKDPDVV 118
            A+ G ++ G+ +H +++ L   LD+ +S   SL+ MY KC   D A  +F +++   +V
Sbjct: 347 CADLGDLERGRFIHKLSVEL--ELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIV 404

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +W A+I    Q G   EA   F+ M+  +VKP+ F   S++ A  E       + IH V+
Sbjct: 405 SWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVV 464

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            +   + +  V  ALV MY + G +     +F+ ++ +   +WNA+   +  +      L
Sbjct: 465 MRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAAL 524

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFG-KQLHAHTIKHSLDGNHVVGTSLVDM 297
            +F +M     +PN  TF+ ++ ACS    V  G K  H     +S++ +     ++VD+
Sbjct: 525 ELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDL 584

Query: 298 YDKSGCLEDA 307
             ++G L +A
Sbjct: 585 LGRAGRLNEA 594



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 152/311 (48%), Gaps = 14/311 (4%)

Query: 258 VILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK 317
           ++L+ CSSL ++   + +     K+ L   H+  T LV ++ + G +++A   F+ +  K
Sbjct: 42  LLLERCSSLKEL---RHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKK 98

Query: 318 DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLH 377
               Y  ++  +A+  + + ALK F +MR + ++   +     L  C   A L  G+ +H
Sbjct: 99  LNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIH 158

Query: 378 SIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGE 437
            + VK+G  LD+F  T L  MYAKC  + +A  VF     RD  SWN ++ GY ++G+  
Sbjct: 159 GLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMAR 218

Query: 438 KALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFAC 496
            ALE   +M +E   P  IT V VL A S + LI  GK+ H  +++   G    +     
Sbjct: 219 MALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRA--GFDSLVNIATA 276

Query: 497 MIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKM 556
           ++D+  + G   +    + +  L  N + W +++ A   + N     K+A  + +   KM
Sbjct: 277 LVDMYAKCGSL-KTARLLFDGMLERNVVSWNSMIDAYVQNEN----PKEAMVIFQ---KM 328

Query: 557 ESNYVFPSDIS 567
               V P+D+S
Sbjct: 329 LDEGVKPTDVS 339


>gi|356544234|ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Glycine max]
          Length = 916

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 200/599 (33%), Positives = 335/599 (55%), Gaps = 4/599 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF ++ + N++ WNA+L  Y+++G    VM LF  M        +F+ +++L   A 
Sbjct: 271 ARQVFDAISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCAC 330

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
             Y++ G+ +H+  I+     + F++ +L+DMY+K G    A K F  +   D ++W AI
Sbjct: 331 FEYLEVGRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAI 390

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q+     A  +F  M    + P++  L S++ A         G+  H +  K G 
Sbjct: 391 IVGYVQEEVEAGAFSLFRRMILDGIVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLGL 450

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E++   G++L+ MY + G +    + + ++  +  VS NAL + +   ++  + + + ++
Sbjct: 451 ETNLFAGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALIAGYA-LKNTKESINLLHE 509

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLD-GNHVVGTSLVDMYDKSG 302
           M + G KP+  TF  ++  C   + V  G Q+H   +K  L  G+  +GTSL+ MY  S 
Sbjct: 510 MQILGLKPSEITFASLIDVCKGSAKVILGLQIHCAIVKRGLLCGSEFLGTSLLGMYMDSQ 569

Query: 303 CLEDAGVAFDSLAN-KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
            L DA + F   ++ K +  +TA+I+ + Q   +++AL  +R+MR   I  ++ T  + L
Sbjct: 570 RLADANILFSEFSSLKSIVMWTALISGHIQNECSDVALNLYREMRDNNISPDQATFVTVL 629

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DT 420
             C+ +++L +GR +HS+   TG  LD   S+ALV MYAKCG +  +  VF+  A + D 
Sbjct: 630 QACALLSSLHDGREIHSLIFHTGFDLDELTSSALVDMYAKCGDVKSSVQVFEELATKKDV 689

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SWN MI G+ K+G  + AL+ F  M      PD++TF+ VL+ACSH G + EG++ F  
Sbjct: 690 ISWNSMIVGFAKNGYAKCALKVFDEMTQSCITPDDVTFLGVLTACSHAGWVYEGRQIFDV 749

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +   YGI P + H+ACM+D+LGR G   E E FI + ++ PNA++W NLLGAC  HG+ +
Sbjct: 750 MVNYYGIEPRVDHYACMVDLLGRWGFLKEAEEFIDKLEVEPNAMIWANLLGACRIHGDEK 809

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
             ++ A+KL+ELEP+  S YV  S++ A  G W++   +R  +  + I+K P CSWI V
Sbjct: 810 RGQRAAKKLIELEPQSSSPYVLLSNMYAASGNWDEARSLRRTMIKKDIQKIPGCSWIVV 868



 Score =  251 bits (641), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 155/568 (27%), Positives = 284/568 (50%), Gaps = 13/568 (2%)

Query: 4   AKRVFKSMPE--LNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           A ++F+ MP    NVV+WN +++G+A++   ++ +  F  M     K S+ +L++VL   
Sbjct: 168 ACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSRSTLASVLSAI 227

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           A+   +  G +VHA AI+ G     +++ SL++MY KC + D+A +VF  I   +++ W 
Sbjct: 228 ASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQVFDAISQKNMIVWN 287

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           A++    Q G      ++F  M    + P++F  TS++           G  +H+ I K 
Sbjct: 288 AMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHSAIIKK 347

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
            F S+  V NAL+ MY + G +    + FE + ++D +SWNA+   +   E       +F
Sbjct: 348 RFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEEVEAGAFSLF 407

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M+L G  P+  +   IL AC ++  +  G+Q H  ++K  L+ N   G+SL+DMY K 
Sbjct: 408 RRMILDGIVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLGLETNLFAGSSLIDMYSKC 467

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G ++DA   + S+  + + +  A+I  YA     E ++    +M++ G+K +E T AS +
Sbjct: 468 GDIKDAHKTYSSMPERSVVSVNALIAGYALKNTKE-SINLLHEMQILGLKPSEITFASLI 526

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLL-DMFVSTALVAMYAKCGSIDDAEAVF-KGSALRD 419
           + C   A +  G  +H   VK G L    F+ T+L+ MY     + DA  +F + S+L+ 
Sbjct: 527 DVCKGSAKVILGLQIHCAIVKRGLLCGSEFLGTSLLGMYMDSQRLADANILFSEFSSLKS 586

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
              W  +I G++++   + AL  +R M D    PD+ TFV VL AC+ +  + +G++  S
Sbjct: 587 IVMWTALISGHIQNECSDVALNLYREMRDNNISPDQATFVTVLQACALLSSLHDGREIHS 646

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
            I    G        + ++D+  + G          E     + + W +++   + +G  
Sbjct: 647 LIFHT-GFDLDELTSSALVDMYAKCGDVKSSVQVFEELATKKDVISWNSMIVGFAKNGY- 704

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDIS 567
                 A+  L++  +M  + + P D++
Sbjct: 705 ------AKCALKVFDEMTQSCITPDDVT 726



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 133/466 (28%), Positives = 218/466 (46%), Gaps = 41/466 (8%)

Query: 4   AKRVFKS--MPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           A+ +F S   P L+ VSW AL++GY ++G   + +H+F  M                   
Sbjct: 101 ARTIFASAPFPHLHTVSWTALISGYVQAGLPHEALHIFDKM------------------- 141

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP--DVVA 119
                            R     D+    ++++ Y   G  D+A ++F ++  P  +VVA
Sbjct: 142 -----------------RNSAVPDQVALVTVLNAYISLGKLDDACQLFQQMPIPIRNVVA 184

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  +I+   +    +EA   F+ M +  VK ++  L S++ A         G  +HA   
Sbjct: 185 WNVMISGHAKTAHYEEALAFFHQMSKHGVKSSRSTLASVLSAIASLAALNHGLLVHAHAI 244

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K GFES   V ++L++MY +        +VF+AI+ ++ + WNA+   +         + 
Sbjct: 245 KQGFESSIYVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQNGFLSNVME 304

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F  M+  G  P+  T+  IL  C+    +  G+QLH+  IK     N  V  +L+DMY 
Sbjct: 305 LFLDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNNALIDMYA 364

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K+G L++AG  F+ +  +D  ++ AII  Y Q      A   FR+M L+GI  +E +LAS
Sbjct: 365 KAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFRRMILDGIVPDEVSLAS 424

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L+ C  +  L  G+  H ++VK G   ++F  ++L+ MY+KCG I DA   +     R 
Sbjct: 425 ILSACGNIKVLEAGQQFHCLSVKLGLETNLFAGSSLIDMYSKCGDIKDAHKTYSSMPERS 484

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC 465
             S N +I GY      E ++     M   G  P EITF  ++  C
Sbjct: 485 VVSVNALIAGYALKNTKE-SINLLHEMQILGLKPSEITFASLIDVC 529



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 140/501 (27%), Positives = 239/501 (47%), Gaps = 44/501 (8%)

Query: 14  LNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVV 73
           L V  WN  + G  +    ++V+  + S  +      +F+ +  L   A    +  G+ V
Sbjct: 11  LRVRQWNWRVQG-TKHYSSERVLQFYASFMNSGHSPDQFTFAVTLSACAKLQNLHLGRAV 69

Query: 74  HAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV--VAWGAIITCLDQQG 131
           H+  I+ G     F   +L+ +Y+KC     A  +F     P +  V+W A+I+   Q G
Sbjct: 70  HSCVIKSGLESTSFCQGALIHLYAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAG 129

Query: 132 CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGN 191
              EA  IF+ MR S+V P+Q  L +++ A                              
Sbjct: 130 LPHEALHIFDKMRNSAV-PDQVALVTVLNA------------------------------ 158

Query: 192 ALVSMYMENGRVSYGSRVFE--AIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
                Y+  G++    ++F+   I  ++ V+WN + S        ++ L  F+QM   G 
Sbjct: 159 -----YISLGKLDDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGV 213

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
           K +  T   +L A +SL+ +  G  +HAH IK   + +  V +SL++MY K    +DA  
Sbjct: 214 KSSRSTLASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQ 273

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369
            FD+++ K++  + A++  Y+Q G     ++ F  M   GI  +EFT  S L+ C+    
Sbjct: 274 VFDAISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEY 333

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           L  GR LHS  +K     ++FV+ AL+ MYAK G++ +A   F+    RD  SWN +I G
Sbjct: 334 LEVGRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVG 393

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGIT 488
           YV+  +   A   FR M+ +G VPDE++   +LSAC ++ ++E G++ H  S+K   G+ 
Sbjct: 394 YVQEEVEAGAFSLFRRMILDGIVPDEVSLASILSACGNIKVLEAGQQFHCLSVK--LGLE 451

Query: 489 PTIKHFACMIDILGRAGKFTE 509
             +   + +ID+  + G   +
Sbjct: 452 TNLFAGSSLIDMYSKCGDIKD 472



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 81/176 (46%), Gaps = 11/176 (6%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E+   +F +  +L+ ++ +AL++ YA+ GD +  + +F   +++  K    S ++++ GF
Sbjct: 643 EIHSLIFHTGFDLDELTSSALVDMYAKCGDVKSSVQVF---EELATKKDVISWNSMIVGF 699

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF-----YRIKDPD 116
           A +GY K    V     +     D      ++   S  G      ++F     Y   +P 
Sbjct: 700 AKNGYAKCALKVFDEMTQSCITPDDVTFLGVLTACSHAGWVYEGRQIFDVMVNYYGIEPR 759

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172
           V  +  ++  L + G  +EA +  + +    V+PN  +  +L+ A    GD++ G+
Sbjct: 760 VDHYACMVDLLGRWGFLKEAEEFIDKLE---VEPNAMIWANLLGACRIHGDEKRGQ 812


>gi|125529196|gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indica Group]
          Length = 785

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 191/604 (31%), Positives = 331/604 (54%), Gaps = 8/604 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R+   MP  N VS+N L++ Y+  G     +      +       +FS +  L   + 
Sbjct: 62  ARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRAGVDVDRFSYAAALAACSR 121

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +G+++AG+ VHA+AI  G +   F+S SLV MYSKCG    A +VF   ++ D V+W ++
Sbjct: 122 AGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSL 181

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD--QRCGESIHAVICKY 181
           ++   + G  +E  ++F +MR   +  N F L S+++  +  GD      E++H  + K 
Sbjct: 182 VSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKA 241

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES------PD 235
           G +SD  + +A++ MY + G +   + +F ++   + V +N + + F   E+        
Sbjct: 242 GLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVAS 301

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
           + L ++ ++  +G +P   TF  +L+AC+    + FGKQ+H   IK++   +  +G++L+
Sbjct: 302 EALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALI 361

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
           D+Y  SGC+ED    F S    D+  +TA+++   Q    E AL  F +    G+K + F
Sbjct: 362 DLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLF 421

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
           T++S +N C+ +A    G  +   A K+G      +  + V MYA+ G +D A   F+  
Sbjct: 422 TISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEM 481

Query: 416 ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
              D  SW+ +I  + +HG    AL  F  M+D   VP+EITF+ VL+ACSH GL++EG 
Sbjct: 482 ESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGL 541

Query: 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
           +++ ++ K YG++PTIKH  C++D+LGRAG+  + E FI+      + ++W +LL +C  
Sbjct: 542 RYYETMNKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNGIFHADPVIWRSLLASCRI 601

Query: 536 HGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCS 595
           H ++E  +  A +++ELEP   ++YV   ++    G  +  S  R L+  +G+KKEP  S
Sbjct: 602 HRDLERGQLVANRIMELEPTSSASYVILYNMYLDAGELSLASKTRDLMKQRGVKKEPGLS 661

Query: 596 WIEV 599
           WIE+
Sbjct: 662 WIEL 665



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 123/503 (24%), Positives = 222/503 (44%), Gaps = 53/503 (10%)

Query: 87  FLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRES 146
           FL  +L+  Y + G    A ++   +   + V++  +I    ++G    + +     R +
Sbjct: 44  FLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRA 103

Query: 147 SVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYG 206
            V  ++F   + + A +  G  R G ++HA+    G  S   V N+LVSMY + G +   
Sbjct: 104 GVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEA 163

Query: 207 SRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266
            RVF+    +D VSWN+L S +    + ++ +R+F  M   G   N      ++K CS  
Sbjct: 164 RRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGR 223

Query: 267 SD--VGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA 324
            D  +   + +H   IK  LD +  + ++++DMY K G L +A   F S+   ++  +  
Sbjct: 224 GDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNT 283

Query: 325 IITSYAQAGE------AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHS 378
           +I  + +         A  AL  + +++  G++  EFT +S L  C+    L  G+ +H 
Sbjct: 284 MIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHG 343

Query: 379 IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEK 438
             +K     D F+ +AL+ +Y   G ++D    F+ S   D  +W  M+ G V++ L EK
Sbjct: 344 QVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEK 403

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACM- 497
           AL  F   L  G  PD  T   V++AC+ + +   G++      + +        F  M 
Sbjct: 404 ALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQ-----IQCFATKSGFDRFTVMG 458

Query: 498 ---IDILGRAG-------KFTEIENF---------------------------ITETKLT 520
              + +  R+G       +F E+E+                            + + K+ 
Sbjct: 459 NSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVV 518

Query: 521 PNALVWENLLGACSWHGNIELDE 543
           PN + +  +L ACS HG + +DE
Sbjct: 519 PNEITFLGVLTACS-HGGL-VDE 539



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 134/281 (47%), Gaps = 11/281 (3%)

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
            +L+  Y + G    A    D +  ++  ++  +I +Y++ G A ++L+   + R  G+ 
Sbjct: 47  NTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRAGVD 106

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            + F+ A+ L  CS    L  GR +H++A+  G    +FVS +LV+MY+KCG + +A  V
Sbjct: 107 VDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRV 166

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG-- 469
           F  +  RD  SWN ++ GYV+ G  E+ +  F MM   G   +      V+  CS  G  
Sbjct: 167 FDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDG 226

Query: 470 --LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWE 527
              I E   H   IK   G+   +   + MID+  + G   E        +  PN +++ 
Sbjct: 227 TMDIAEA-VHGCVIKA--GLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQ-EPNVVMFN 282

Query: 528 NLL-GACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            ++ G C     I   ++ A + L L  +++S  + P++ +
Sbjct: 283 TMIAGFCRTETVI--GKEVASEALTLYSEVQSRGMQPTEFT 321



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 117/241 (48%), Gaps = 6/241 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME   R F+S P+ ++V+W A+++G  ++   +K + LF        K   F++S+V+  
Sbjct: 370 MEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNA 429

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKF--LSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
            A+    +AG+ +   A + G   D+F  +  S V MY++ G  D A + F  ++  DVV
Sbjct: 430 CASLAVARAGEQIQCFATKSG--FDRFTVMGNSCVHMYARSGDVDAATRRFQEMESHDVV 487

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +W A+I+C  Q GC ++A   F+ M ++ V PN+     ++ A +  G    G   +  +
Sbjct: 488 SWSAVISCHAQHGCARDALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYYETM 547

Query: 179 CK-YGFESDTLVGNALVSMYMENGRVSYGSR-VFEAIAHQDSVSWNALFSRFQDYESPDQ 236
            K YG          +V +    GR++     +   I H D V W +L +  + +   ++
Sbjct: 548 NKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNGIFHADPVIWRSLLASCRIHRDLER 607

Query: 237 G 237
           G
Sbjct: 608 G 608


>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Brachypodium distachyon]
          Length = 822

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 195/599 (32%), Positives = 319/599 (53%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  VF ++P  N V+W A++ GY++ G G   + LF  M     +  +F L++ +  
Sbjct: 165 IDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAVSA 224

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +  G+++ G+  H  A R+    D  +  +L+D+Y KC     A K+F  +++ ++V+W
Sbjct: 225 CSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKLFDCMENRNLVSW 284

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I    Q  C  EA  +F  + +   +P+ F   S++ +         G  +HA   K
Sbjct: 285 TTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAIWQGRQVHAHAIK 344

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              ESD  V N+L+ MY +   ++    VFEA+A  D++S+NA+   +         + +
Sbjct: 345 ANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAIDV 404

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M     KP+  TF+ +L   SS S +   KQ+H   +K     +   G+SL+D+Y K
Sbjct: 405 FSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGTSLDLYAGSSLIDVYSK 464

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
              +EDA   F+ + N+D+  + A+I   AQ  + E A+K F ++++ G+  NEFT  + 
Sbjct: 465 FSLVEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFTFVAL 524

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           +   S + ++ +G+  H+  +K G   D  VS AL+ MYAKCG I +   +F+ +  +D 
Sbjct: 525 VTVASTLVSMFHGQQFHAQIIKAGADSDHHVSNALIDMYAKCGFIKEGRLLFESTLGKDV 584

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
             WN MI  Y +HG  E+AL  FRMM   G  P+ +TFV VLSAC+H GL++EG +HF  
Sbjct: 585 ICWNSMISTYAQHGQAEEALYVFRMMGGTGVEPNYVTFVGVLSACAHAGLVDEGLRHFDF 644

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +K  Y I P  +H+A ++++ GR+GK    + FI    + P A VW +LL AC   GN+E
Sbjct: 645 MKTKYAIEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPAAAVWRSLLSACHLFGNVE 704

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +     E  L  +P      V  S+I A++G W+D   +R  +   G+ KEP  SWIEV
Sbjct: 705 IGRYATEMALLADPADSGPSVLMSNIYASRGLWSDAQKLRQGMDCAGVVKEPGYSWIEV 763



 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 158/539 (29%), Positives = 287/539 (53%), Gaps = 4/539 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDME--KKFSKFSLSTVLKGF 61
           A+R+F  MP  N+VSW + ++ +A+ G  +  + LF + +     +  ++F L++ L+  
Sbjct: 65  ARRLFDRMPHKNLVSWGSAISMHAQHGCEEDAVALFAAFQRASGGEAPNEFLLASALRAC 124

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           A S  +  GQ VH +A+R+G   + ++  +L+++Y+K G  D A+ VF  +   + V W 
Sbjct: 125 AQSRAVSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVGCIDAAMLVFDALPVKNPVTWT 184

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           A+IT   Q G    A ++F  M    V+P++FVL S V A +  G    G   H    + 
Sbjct: 185 AVITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAVSACSALGFLEGGRQTHGYAYRI 244

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
             E+D  V NAL+ +Y +  R+S   ++F+ + +++ VSW  + + +       + + +F
Sbjct: 245 AVETDASVINALIDLYCKCSRLSLARKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMF 304

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
           +Q+  +G++P++     IL +C SL+ +  G+Q+HAH IK +L+ +  V  SL+DMY K 
Sbjct: 305 WQLSQEGWQPDVFACASILNSCGSLAAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKC 364

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
             L +A   F++LA  D  +Y A+I  Y++ G+   A+  F KMR   +K +  T  S L
Sbjct: 365 EHLTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLL 424

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
              S  + +   + +H + VK+G  LD++  ++L+ +Y+K   ++DA+AVF     RD  
Sbjct: 425 GVSSSQSAIELSKQIHGLIVKSGTSLDLYAGSSLIDVYSKFSLVEDAKAVFNLMHNRDMV 484

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
            WN MI G  ++  GE+A++ F  +   G  P+E TFV +++  S +  +  G++  + I
Sbjct: 485 IWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFTFVALVTVASTLVSMFHGQQFHAQI 544

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
            K  G          +ID+  + G F +    + E+ L  + + W +++   + HG  E
Sbjct: 545 IKA-GADSDHHVSNALIDMYAKCG-FIKEGRLLFESTLGKDVICWNSMISTYAQHGQAE 601



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 136/463 (29%), Positives = 235/463 (50%), Gaps = 8/463 (1%)

Query: 72  VVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQG 131
           + HA A+  G   D FL+  L+  YSK G   +A ++F R+   ++V+WG+ I+   Q G
Sbjct: 32  LAHARAVVTGALPDLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHG 91

Query: 132 CCQEAAKIFNLMRESS--VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
           C ++A  +F   + +S    PN+F+L S +RA  ++     G+ +H V  + G + +  V
Sbjct: 92  CEEDAVALFAAFQRASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYV 151

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
           G AL+++Y + G +     VF+A+  ++ V+W A+ + +         L +F +M L G 
Sbjct: 152 GTALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGV 211

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
           +P+       + ACS+L  +  G+Q H +  + +++ +  V  +L+D+Y K   L  A  
Sbjct: 212 RPDRFVLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARK 271

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369
            FD + N++L ++T +I  Y Q      A+  F ++  EG + + F  AS LN C  +A 
Sbjct: 272 LFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAA 331

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           +  GR +H+ A+K     D +V  +L+ MYAKC  + +A AVF+  A  D  S+N MI G
Sbjct: 332 IWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEG 391

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITP 489
           Y + G    A++ F  M      P  +TFV +L   S    IE  K+    I K  G + 
Sbjct: 392 YSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVK-SGTSL 450

Query: 490 TIKHFACMIDILGRAGKFTEIENFITETKLTPN--ALVWENLL 530
            +   + +ID+     KF+ +E+      L  N   ++W  ++
Sbjct: 451 DLYAGSSLIDVY---SKFSLVEDAKAVFNLMHNRDMVIWNAMI 490


>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g40720-like [Vitis vinifera]
          Length = 854

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 203/602 (33%), Positives = 326/602 (54%), Gaps = 4/602 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M +   +F  M   N+VSWNA+++GY + GD  K + LF  M   E KF   ++   ++ 
Sbjct: 205 MRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQA 264

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A  G +K G+ +H +AI+     D ++  +L++MYS  G  +++ ++F  + + D   W
Sbjct: 265 CAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLW 324

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC-GESIHAVIC 179
            ++I+     GC +EA  +F  M+   VK ++  +  ++    E       G+S+HA + 
Sbjct: 325 NSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVI 384

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K G   D  +GNAL+SMY E   V    ++F+ +   D +SWN +           Q   
Sbjct: 385 KSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACE 444

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F +M     KPN  T I IL AC  ++ + FG+ +H + +KHS++ N  + T+L DMY 
Sbjct: 445 LFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYM 504

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
             G    A   F+   ++DL ++ A+I SY +  +A  AL  F +M  E  + N  T+ +
Sbjct: 505 NCGDEATARDLFEGCPDRDLISWNAMIASYVKNNQAHKALLLFHRMISEA-EPNSVTIIN 563

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLL--DMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
            L+  + +ATL  G+ LH+   + G  L  D+ ++ A + MYA+CGS+  AE +FK    
Sbjct: 564 VLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLPK 623

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           R+  SWN MI GY  +G G  A+ AF  ML++G+ P+ +TFV VLSACSH G IE G + 
Sbjct: 624 RNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQL 683

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F S+ + + +TP + H++C++D+L R G   E   FI    + P+A VW  LL +C  + 
Sbjct: 684 FHSMVQDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRALLSSCRAYS 743

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           + +  +   EKL +LEP    NYV  S++ AT G W +   +R  L  +G++K P  SWI
Sbjct: 744 DAKQAKTIFEKLDKLEPMNAGNYVLLSNVYATAGLWLEVRRIRTWLKEKGLRKPPGISWI 803

Query: 598 EV 599
            V
Sbjct: 804 IV 805



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 148/540 (27%), Positives = 264/540 (48%), Gaps = 6/540 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ VF +M + +VV WNA++ GY   G  ++ M L   M     + +  ++  +L  
Sbjct: 104 VEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLA 163

Query: 61  FANSGYIKAGQVVHAMAIRLGC-ALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
              +  ++ G+ VH   +R G    +  ++ +L+  Y +  +    L +F  +   ++V+
Sbjct: 164 CEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRFDMRVLPL-LFDLMVVRNIVS 222

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W A+I+     G   +A ++F  M    VK +   +   V+A  E G  + G+ IH +  
Sbjct: 223 WNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAI 282

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K+ F  D  + NAL++MY  NG +    ++FE++ ++D+  WN++ S +  +   ++ + 
Sbjct: 283 KFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMD 342

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSL-SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           +F +M  +G K +  T +++L  C  L S +  GK LHAH IK  +  +  +G +L+ MY
Sbjct: 343 LFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRIDASLGNALLSMY 402

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            +  C+E     FD +   D+ ++  +I + A+      A + F +MR   IK N +T+ 
Sbjct: 403 TELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMRESEIKPNSYTII 462

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L  C  V  L  GR +H   +K    ++  + TAL  MY  CG    A  +F+G   R
Sbjct: 463 SILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCGDEATARDLFEGCPDR 522

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-H 477
           D  SWN MI  YVK+    KAL  F  M+ E   P+ +T + VLS+ +H+  + +G+  H
Sbjct: 523 DLISWNAMIASYVKNNQAHKALLLFHRMISEAE-PNSVTIINVLSSFTHLATLPQGQSLH 581

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
               ++ + +   +      I +  R G     EN I +T    N + W  ++     +G
Sbjct: 582 AYVTRRGFSLGLDLSLANAFITMYARCGSLQSAEN-IFKTLPKRNIISWNAMIAGYGMNG 640



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 129/460 (28%), Positives = 234/460 (50%), Gaps = 5/460 (1%)

Query: 19  WNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAI 78
           WN+++   A   + Q ++  +  M+ +    +  +L  VLK  A    ++ G+ +H    
Sbjct: 21  WNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSIHRSIQ 80

Query: 79  RLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAK 138
                 D  +  ++VD Y KCG  ++A  VF  + D DVV W A++      GC +EA  
Sbjct: 81  GTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAML 140

Query: 139 IFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG-FESDTLVGNALVSMY 197
           +   M   +++PN   + +L+ A     + R G  +H    + G F+S+  V  AL+  Y
Sbjct: 141 LVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFY 200

Query: 198 ME-NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTF 256
           +  + RV     +F+ +  ++ VSWNA+ S + D     + L +F QML+   K +  T 
Sbjct: 201 LRFDMRVL--PLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTM 258

Query: 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
           +V ++AC+ L  +  GKQ+H   IK     +  +  +L++MY  +G LE +   F+S+ N
Sbjct: 259 LVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPN 318

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT-LANGRL 375
           +D   + ++I++YA  G  E A+  F +M+ EG+K +E T+   L+ C  +A+ L  G+ 
Sbjct: 319 RDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKS 378

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           LH+  +K+G  +D  +  AL++MY +   ++  + +F      D  SWN MI    ++ L
Sbjct: 379 LHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTL 438

Query: 436 GEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
             +A E F  M +    P+  T + +L+AC  +  ++ G+
Sbjct: 439 RAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGR 478



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 185/375 (49%), Gaps = 6/375 (1%)

Query: 111 RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC 170
           +IKDP    W ++I         Q     +  M    V PN   L  +++A         
Sbjct: 14  QIKDPK--HWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVER 71

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
           G+SIH  I       D  VG A+V  Y + G V     VF+A++ +D V WNA+   +  
Sbjct: 72  GKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVG 131

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL-DGNHV 289
           +   ++ + +  +M  +  +PN  T + +L AC   S++  G+ +H + +++ + D N  
Sbjct: 132 WGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPH 191

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           V T+L+  Y +   +    + FD +  +++ ++ A+I+ Y   G+   AL+ F +M ++ 
Sbjct: 192 VATALIGFYLRFD-MRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDE 250

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           +K +  T+   +  C+ + +L  G+ +H +A+K   + D+++  AL+ MY+  GS++ + 
Sbjct: 251 VKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSH 310

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM- 468
            +F+    RD   WN MI  Y   G  E+A++ F  M  EG   DE T V++LS C  + 
Sbjct: 311 QLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELA 370

Query: 469 -GLIEEGKKHFSSIK 482
            GL++    H   IK
Sbjct: 371 SGLLKGKSLHAHVIK 385



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 160/327 (48%), Gaps = 6/327 (1%)

Query: 213 IAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFG 272
           I  +D   WN++     + ++    L  + QM   G  PN  T  ++LKAC++ + V  G
Sbjct: 13  IQIKDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERG 72

Query: 273 KQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQA 332
           K +H       L  +  VGT++VD Y K G +EDA   FD+++++D+  + A++  Y   
Sbjct: 73  KSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGW 132

Query: 333 GEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL-LDMFV 391
           G  E A+   R+M  E ++ N  T+ + L  C   + L  GR +H   ++ G    +  V
Sbjct: 133 GCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHV 192

Query: 392 STALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGY 451
           +TAL+  Y +   +     +F    +R+  SWN MI GY   G   KALE F  ML +  
Sbjct: 193 ATALIGFYLRF-DMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEV 251

Query: 452 VPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEI 510
             D +T +V + AC+ +G ++ GK+ H  +IK  +     +     ++++    G   E 
Sbjct: 252 KFDCVTMLVAVQACAELGSLKLGKQIHQLAIK--FEFVEDLYILNALLNMYSNNGSL-ES 308

Query: 511 ENFITETKLTPNALVWENLLGACSWHG 537
            + + E+    +A +W +++ A +  G
Sbjct: 309 SHQLFESVPNRDAPLWNSMISAYAAFG 335


>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 752

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 192/598 (32%), Positives = 323/598 (54%), Gaps = 1/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLKGFA 62
           ++ +F  M   + +SW  L+ GY  + D  + + LF +M      +  +F +S  LK   
Sbjct: 109 SRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVQPGLQRDQFMISVALKACG 168

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
               I  G+++H  +++ G     F+S +L+DMY K G  +   +VF ++   +VV+W A
Sbjct: 169 LGVNICFGELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTA 228

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           II  L   G   EA   F+ M  S V  +       ++A+ ++     G++IH    K G
Sbjct: 229 IIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQG 288

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F+  + V N L +MY + G+  Y  R+FE +   D VSW  L + +      +  +  F 
Sbjct: 289 FDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFK 348

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M      PN  TF  ++ AC++L+   +G+Q+H H ++  L     V  S+V +Y KSG
Sbjct: 349 RMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDALSVANSIVTLYSKSG 408

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            L+ A + F  +  KD+ +++ II  Y+Q G A+ A      MR EG K NEF L+S L+
Sbjct: 409 LLKSASLVFHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLS 468

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C  +A L  G+ +H+  +  G   +  V +AL++MY+KCGS+++A  +F G  + +  S
Sbjct: 469 VCGSMALLEQGKQVHAHVLCIGIDHEAMVHSALISMYSKCGSVEEASKIFNGMKINNIIS 528

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           W  MI GY +HG  ++A+  F  +   G  PD +TF+ VL+ACSH G+++ G  +F  + 
Sbjct: 529 WTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVTFIGVLTACSHAGMVDLGFYYFMLMT 588

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
             Y I+P+ +H+ C+ID+L RAG+ +E E+ I       + +VW  LL +C  HG+++  
Sbjct: 589 NEYQISPSKEHYGCIIDLLCRAGRLSEAEHMIRSMPCYTDDVVWSTLLRSCRVHGDVDRG 648

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
              AE+LL L+P     ++  ++I A +GRW + + +R L+ S+G+ KE   SW+ V+
Sbjct: 649 RWTAEQLLRLDPNSAGTHIALANIYAAKGRWKEAAHIRKLMKSKGVIKERGWSWVNVN 706



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 145/287 (50%), Gaps = 1/287 (0%)

Query: 191 NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK-GF 249
           N+ +   ++ G++     +F+ + H+D +SW  L + + +     + L +F  M ++ G 
Sbjct: 94  NSELKQLVKQGQLCKSRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVQPGL 153

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
           + +     V LKAC    ++ FG+ LH  ++K  L  +  V ++L+DMY K G +E    
Sbjct: 154 QRDQFMISVALKACGLGVNICFGELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCR 213

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369
            F  +  +++ ++TAII     AG    AL  F +M +  +  +  T A  L   +  + 
Sbjct: 214 VFKKMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSL 273

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           L +G+ +H+  +K G     FV   L  MY KCG  D    +F+   + D  SW  +I  
Sbjct: 274 LHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITT 333

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
           YV+ G  E A+EAF+ M      P++ TF  V+SAC+++ + + G++
Sbjct: 334 YVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQ 380


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 213/604 (35%), Positives = 345/604 (57%), Gaps = 17/604 (2%)

Query: 4   AKRVFKSMPEL-NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG-F 61
           A+ VF  M  L ++VSW A+ +  A +G  ++ + L   M +     + ++L  V    F
Sbjct: 103 ARNVFDGMRGLRDIVSWTAMASCLARNGAERESLLLIGEMLESGLLPNAYTLCAVAHACF 162

Query: 62  ANSGYIKAGQVVHAMAIRLGC-ALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +  Y   G VV  +  ++G    D  +  +L+DM ++ G   +A KVF  + +  VV W
Sbjct: 163 PHELYCLVGGVVLGLVHKMGLWGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVW 222

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+   Q  C +EA +IF    E   +P+++ ++S++ A TE G  R G  +H++  +
Sbjct: 223 TLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALR 282

Query: 181 YGFESDTLVGNALVSMYMENG---RVSYGSRVFEAIAHQDSVSWNALFSRF-QDYESPDQ 236
            GF SD  V   LV MY ++     + Y ++VFE +   D +SW AL S + Q     ++
Sbjct: 283 MGFASDACVSCGLVDMYAKSNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENK 342

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            + +F +ML +  KPN  T+  ILKAC+++SD   G+Q+HAH IK +    H VG +LV 
Sbjct: 343 VMVLFGEMLNESIKPNHITYSSILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVS 402

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           MY +SGC+E+A   F+ L  +      ++I+   +  +A +  +  R M + GI S+ F 
Sbjct: 403 MYAESGCMEEARRVFNQLYER------SMISCITEGRDAPLDHRIGR-MDM-GISSSTF- 453

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
            AS ++  + V  L  G+ LH++ +K G   D FVS +LV+MY++CG ++DA   F    
Sbjct: 454 -ASLISAAASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELK 512

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            R+  SW  MI G  KHG  E+AL  F  M+  G  P+++T++ VLSACSH+GL+ EGK+
Sbjct: 513 DRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKE 572

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
           +F S+++ +G+ P ++H+ACM+D+L R+G   E   FI E  L  +ALVW+ LLGAC  H
Sbjct: 573 YFRSMQRDHGLIPRMEHYACMVDLLARSGLVKEALEFINEMPLKADALVWKTLLGACRSH 632

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSW 596
            NIE+ E  A+ ++ELEP+  + YV  S++ A  G W++ + +R+ +    + KE   SW
Sbjct: 633 DNIEVGEIAAKNVIELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSW 692

Query: 597 IEVD 600
           +EV+
Sbjct: 693 MEVE 696



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 140/526 (26%), Positives = 251/526 (47%), Gaps = 57/526 (10%)

Query: 65  GYIKAGQVVHAMAIRLGCALDK--FLSCSLVDMYSKCGLADNALKVFYRIKD-PDVVAWG 121
           G ++ G+ +H   +R G  LD+   ++ SL+ +YS+CG   +A  VF  ++   D+V+W 
Sbjct: 62  GDLRLGRALHRRLLR-GDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWT 120

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC-- 179
           A+ +CL + G  +E+  +   M ES + PN + L ++  A             H + C  
Sbjct: 121 AMASCLARNGAERESLLLIGEMLESGLLPNAYTLCAVAHACFP----------HELYCLV 170

Query: 180 ---------KYG-FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
                    K G + +D  VG+AL+ M   NG ++   +VF+ +  +  V W  L SR+ 
Sbjct: 171 GGVVLGLVHKMGLWGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYV 230

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
             E  ++ + IF   L  GF+P+  T   ++ AC+ L  V  G QLH+  ++     +  
Sbjct: 231 QGECAEEAVEIFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDAC 290

Query: 290 VGTSLVDMYDKSG---CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAE-MALKCFRKM 345
           V   LVDMY KS     ++ A   F+ +   D+ ++TA+I+ Y Q+G  E   +  F +M
Sbjct: 291 VSCGLVDMYAKSNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEM 350

Query: 346 RLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSI 405
             E IK N  T +S L  C+ ++   +GR +H+  +K+       V  ALV+MYA+ G +
Sbjct: 351 LNESIKPNHITYSSILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCM 410

Query: 406 DDAEAVFKGSALRDTASWNMMIGGY---VKHGLGEKALEAFRMMLDEGYVPDEITFVVVL 462
           ++A  VF  + L + +  + +  G    + H +G          +D G      TF  ++
Sbjct: 411 EEARRVF--NQLYERSMISCITEGRDAPLDHRIGR---------MDMGISSS--TFASLI 457

Query: 463 SACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTP 521
           SA + +G++ +G++ H  ++K  +G    + +   ++ +  R G   +      E K   
Sbjct: 458 SAAASVGMLTKGQQLHAMTLKAGFGSDRFVSN--SLVSMYSRCGYLEDACRSFNELK-DR 514

Query: 522 NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           N + W +++   + HG        AE+ L L   M    V P+D++
Sbjct: 515 NVISWTSMISGLAKHGY-------AERALSLFHDMILTGVKPNDVT 553



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 157/309 (50%), Gaps = 12/309 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESG-DGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           M+ A +VF+ M + +V+SW AL++GY +SG    KVM LF  M +   K +  + S++LK
Sbjct: 308 MDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILK 367

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             AN     +G+ VHA  I+   A    +  +LV MY++ G  + A +VF ++ +     
Sbjct: 368 ACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYER---- 423

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
             ++I+C+ +       A + + +    +  +     SL+ A    G    G+ +HA+  
Sbjct: 424 --SMISCITE----GRDAPLDHRIGRMDMGISSSTFASLISAAASVGMLTKGQQLHAMTL 477

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K GF SD  V N+LVSMY   G +    R F  +  ++ +SW ++ S    +   ++ L 
Sbjct: 478 KAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALS 537

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ-LHAHTIKHSLDGNHVVGTSLVDMY 298
           +F+ M+L G KPN  T+I +L ACS +  V  GK+   +    H L         +VD+ 
Sbjct: 538 LFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLL 597

Query: 299 DKSGCLEDA 307
            +SG +++A
Sbjct: 598 ARSGLVKEA 606



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 89/206 (43%), Gaps = 19/206 (9%)

Query: 373 GRLLHSIAVKTGHLLDM--FVSTALVAMYAKCGSIDDAEAVFKG-SALRDTASWNMMIGG 429
           GR LH   ++ G LLD    V+ +L+ +Y++CG++  A  VF G   LRD  SW  M   
Sbjct: 67  GRALHRRLLR-GDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASC 125

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITP 489
             ++G   ++L     ML+ G +P+  T   V  AC    L          +    G+  
Sbjct: 126 LARNGAERESLLLIGEMLESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKMGLWG 185

Query: 490 T-IKHFACMIDILGRAGKFTE----IENFITETKLTPNALVWENLLGACSWHGNIELDEK 544
           T I   + +ID+L R G         +  I +T +    L+   + G C+        E+
Sbjct: 186 TDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECA--------EE 237

Query: 545 DAEKLLE-LEPKMESN-YVFPSDISA 568
             E  L+ LE   E + Y   S ISA
Sbjct: 238 AVEIFLDFLEDGFEPDRYTMSSMISA 263



 Score = 43.5 bits (101), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 27/172 (15%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A R F  + + NV+SW ++++G A+ G  ++ + LF  M     K +  +   VL  
Sbjct: 501 LEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSA 560

Query: 61  FANSGYIKAG-------QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
            ++ G ++ G       Q  H +  R+     +  +C +VD+ ++ GL   AL+    + 
Sbjct: 561 CSHVGLVREGKEYFRSMQRDHGLIPRM-----EHYAC-MVDLLARSGLVKEALEFINEMP 614

Query: 114 -DPDVVAWGAIITCLDQQGCCQEAAKI-------FNLMRESSVKPNQFVLTS 157
              D + W  ++      G C+    I        N++      P  +VL S
Sbjct: 615 LKADALVWKTLL------GACRSHDNIEVGEIAAKNVIELEPRDPAPYVLLS 660


>gi|334185633|ref|NP_189226.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546761|sp|Q9LU94.2|PP255_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g25970
 gi|332643575|gb|AEE77096.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 701

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 200/601 (33%), Positives = 332/601 (55%), Gaps = 5/601 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A  +F  MP+ + VSWN +++GY   G  +    LF  MK        +S S +LKG A+
Sbjct: 54  ANMLFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFTCMKRSGSDVDGYSFSRLLKGIAS 113

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G+ VH + I+ G   + ++  SLVDMY+KC   ++A + F  I +P+ V+W A+
Sbjct: 114 VKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVEDAFEAFKEISEPNSVSWNAL 173

Query: 124 ITCLDQQGCCQEAAKIFNLMR-ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I    Q    + A  +  LM  +++V  +      L+    +       + +HA + K G
Sbjct: 174 IAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLTLLDDPMFCNLLKQVHAKVLKLG 233

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALFSRFQDYESPDQGLRIF 241
            + +  + NA++S Y + G VS   RVF+ +   +D +SWN++ + F  +E  +    +F
Sbjct: 234 LQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKDLISWNSMIAGFSKHELKESAFELF 293

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK- 300
            QM     + ++ T+  +L ACS      FGK LH   IK  L+       +L+ MY + 
Sbjct: 294 IQMQRHWVETDIYTYTGLLSACSGEEHQIFGKSLHGMVIKKGLEQVTSATNALISMYIQF 353

Query: 301 -SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
            +G +EDA   F+SL +KDL ++ +IIT +AQ G +E A+K F  +R   IK +++  ++
Sbjct: 354 PTGTMEDALSLFESLKSKDLISWNSIITGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSA 413

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG-SALR 418
            L  CS +ATL  G+ +H++A K+G + + FV ++L+ MY+KCG I+ A   F+  S+  
Sbjct: 414 LLRSCSDLATLQLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIESARKCFQQISSKH 473

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
            T +WN MI GY +HGLG+ +L+ F  M ++    D +TF  +L+ACSH GLI+EG +  
Sbjct: 474 STVAWNAMILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQEGLELL 533

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           + ++ +Y I P ++H+A  +D+LGRAG   + +  I    L P+ +V +  LG C   G 
Sbjct: 534 NLMEPVYKIQPRMEHYAAAVDLLGRAGLVNKAKELIESMPLNPDPMVLKTFLGVCRACGE 593

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           IE+  + A  LLE+EP+    YV  S + +   +W + + V+ ++  +G+KK P  SWIE
Sbjct: 594 IEMATQVANHLLEIEPEDHFTYVSLSHMYSDLKKWEEKASVKKMMKERGVKKVPGWSWIE 653

Query: 599 V 599
           +
Sbjct: 654 I 654



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 194/409 (47%), Gaps = 4/409 (0%)

Query: 72  VVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQG 131
           + H  AI+ G   D ++S  ++D Y K G    A  +F  +   D V+W  +I+     G
Sbjct: 21  LTHCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCG 80

Query: 132 CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGN 191
             ++A  +F  M+ S    + +  + L++          GE +H ++ K G+E +  VG+
Sbjct: 81  KLEDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGS 140

Query: 192 ALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK-GFK 250
           +LV MY +  RV      F+ I+  +SVSWNAL + F           +   M +K    
Sbjct: 141 SLVDMYAKCERVEDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVT 200

Query: 251 PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVA 310
            +  TF  +L            KQ+HA  +K  L     +  +++  Y   G + DA   
Sbjct: 201 MDAGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRV 260

Query: 311 FDSL-ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369
           FD L  +KDL ++ ++I  +++    E A + F +M+   ++++ +T    L+ CS    
Sbjct: 261 FDGLGGSKDLISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSACSGEEH 320

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAK--CGSIDDAEAVFKGSALRDTASWNMMI 427
              G+ LH + +K G       + AL++MY +   G+++DA ++F+    +D  SWN +I
Sbjct: 321 QIFGKSLHGMVIKKGLEQVTSATNALISMYIQFPTGTMEDALSLFESLKSKDLISWNSII 380

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            G+ + GL E A++ F  +       D+  F  +L +CS +  ++ G++
Sbjct: 381 TGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQLGQQ 429



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 184/378 (48%), Gaps = 5/378 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMK-DMEKKFSKFSLSTVLK 59
           +E A   FK + E N VSWNAL+ G+ +  D +    L   M+          + + +L 
Sbjct: 152 VEDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLT 211

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI-KDPDVV 118
              +  +    + VHA  ++LG   +  +  +++  Y+ CG   +A +VF  +    D++
Sbjct: 212 LLDDPMFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKDLI 271

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +W ++I    +    + A ++F  M+   V+ + +  T L+ A +    Q  G+S+H ++
Sbjct: 272 SWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSACSGEEHQIFGKSLHGMV 331

Query: 179 CKYGFESDTLVGNALVSMYME--NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
            K G E  T   NAL+SMY++   G +     +FE++  +D +SWN++ + F      + 
Sbjct: 332 IKKGLEQVTSATNALISMYIQFPTGTMEDALSLFESLKSKDLISWNSIITGFAQKGLSED 391

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            ++ F  +     K +   F  +L++CS L+ +  G+Q+HA   K     N  V +SL+ 
Sbjct: 392 AVKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQLGQQIHALATKSGFVSNEFVISSLIV 451

Query: 297 MYDKSGCLEDAGVAFDSLANK-DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
           MY K G +E A   F  +++K    A+ A+I  YAQ G  +++L  F +M  + +K +  
Sbjct: 452 MYSKCGIIESARKCFQQISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQNVKLDHV 511

Query: 356 TLASCLNGCSPVATLANG 373
           T  + L  CS    +  G
Sbjct: 512 TFTAILTACSHTGLIQEG 529



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 146/325 (44%), Gaps = 9/325 (2%)

Query: 276 HAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEA 335
           H + IK     +  V   ++D Y K G L  A + FD +  +D  ++  +I+ Y   G+ 
Sbjct: 23  HCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKL 82

Query: 336 EMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTAL 395
           E A   F  M+  G   + ++ +  L G + V     G  +H + +K G+  +++V ++L
Sbjct: 83  EDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSL 142

Query: 396 VAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM-LDEGYVPD 454
           V MYAKC  ++DA   FK  +  ++ SWN +I G+V+    + A     +M +      D
Sbjct: 143 VDMYAKCERVEDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMD 202

Query: 455 EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFI 514
             TF  +L+           K+  + + K+ G+   I     MI      G  ++ +   
Sbjct: 203 AGTFAPLLTLLDDPMFCNLLKQVHAKVLKL-GLQHEITICNAMISSYADCGSVSDAKRVF 261

Query: 515 TETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPK-MESN-YVFPSDISATQGR 572
                + + + W +++   S H   EL E   E  ++++   +E++ Y +   +SA  G 
Sbjct: 262 DGLGGSKDLISWNSMIAGFSKH---ELKESAFELFIQMQRHWVETDIYTYTGLLSACSGE 318

Query: 573 WNDFSG--VRALLSSQGIKKEPSCS 595
            +   G  +  ++  +G+++  S +
Sbjct: 319 EHQIFGKSLHGMVIKKGLEQVTSAT 343


>gi|255561624|ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539035|gb|EEF40632.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 793

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 203/603 (33%), Positives = 331/603 (54%), Gaps = 7/603 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F  M E +V+S+N L++GY   G   K + LF   +    K  KFS + VL     
Sbjct: 63  AQKLFDRMSERSVISYNILISGYGGMGFYHKAIGLFSEARMACLKLDKFSYAGVLSACGQ 122

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G+V+H +AI  G     FL+  L+DMY KC   D+A  +F    + D V+W ++
Sbjct: 123 IKDFALGKVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDELDNVSWNSL 182

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC--GESIHAVICKY 181
           IT   + G  +E  K+   M  + ++ N F L S +++     +     G+++H    K 
Sbjct: 183 ITGYARVGAYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYGKTLHGYTVKQ 242

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD-----Q 236
           G + D +VG AL+ MY + G +    ++F    +Q+ V +NA+ + F   E  D     +
Sbjct: 243 GLDLDIVVGTALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQTEDIDKECAYE 302

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            L++F QM  +G KP+  TF  I+K C+ +    +GKQ+HAH  KH++  +  +G++L++
Sbjct: 303 ALKLFSQMQRQGIKPSDFTFSSIIKICNHIEAFEYGKQIHAHICKHNIQSDEFIGSTLIE 362

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           +Y   G  ED    F+S    D+ ++T +I  YAQ G+ E AL  F ++   G K +EF 
Sbjct: 363 LYSLLGSTEDQLKCFNSTPKLDIVSWTTMIAGYAQNGQFESALALFYELLASGKKPDEFI 422

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
           + + L+ C+ VA   +G  +H  AVKTG      V  + ++MYAK G++D A+  F+   
Sbjct: 423 ITTMLSACADVAAERSGEQVHGYAVKTGIGTLAIVQNSQISMYAKSGNLDSAKITFEEIK 482

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
             D  SW++MI    +HG  + A+  F +M   G  P++ITF+ VL+ACSH GL+EEG +
Sbjct: 483 NPDVVSWSVMICSNAQHGHAKDAINLFELMKSYGIHPNQITFLGVLTACSHGGLVEEGLR 542

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
           ++ S+KK Y +   +KH  C++D+L RAG+  + +NFI  +    + ++W  LL  C  +
Sbjct: 543 YYESMKKDYDMKINVKHCTCIVDLLSRAGRLLDAKNFILNSGFGDHPVMWRTLLSGCRIY 602

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSW 596
            +I   +  AEKL+EL+P+  S+YV   +I    G     + +R L+  +GI+KEP  SW
Sbjct: 603 KDIVTGKHVAEKLIELDPQESSSYVLLYNIYTDAGIDLPATKIRELMKDRGIRKEPGQSW 662

Query: 597 IEV 599
           IEV
Sbjct: 663 IEV 665



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 154/538 (28%), Positives = 267/538 (49%), Gaps = 26/538 (4%)

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           + SG    G++ HA  I+       FL  + +++YSK G   NA K+F R+ +  V+++ 
Sbjct: 20  SKSGSSIHGKLAHAHMIKTAFNPCLFLLNNFLNLYSKWGEMGNAQKLFDRMSERSVISYN 79

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            +I+     G   +A  +F+  R + +K ++F    ++ A  +  D   G+ IH +    
Sbjct: 80  ILISGYGGMGFYHKAIGLFSEARMACLKLDKFSYAGVLSACGQIKDFALGKVIHGLAIVC 139

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G      + N L+ MY +  R+ +   +FE+    D+VSWN+L + +    + ++ L++ 
Sbjct: 140 GLGQQVFLTNLLIDMYCKCERIDHARLLFESSDELDNVSWNSLITGYARVGAYEEMLKLL 199

Query: 242 YQMLLKGFKPNMCTFIVILKACS-SLSD-VGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
            +M   G + N  T    LK+C  +L++ V +GK LH +T+K  LD + VVGT+L+DMY 
Sbjct: 200 VKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYGKTLHGYTVKQGLDLDIVVGTALLDMYA 259

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGE-----AEMALKCFRKMRLEGIKSNE 354
           K+G L DA   F +  N+++  Y A+I  + Q  +     A  ALK F +M+ +GIK ++
Sbjct: 260 KTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEALKLFSQMQRQGIKPSD 319

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
           FT +S +  C+ +     G+ +H+   K     D F+ + L+ +Y+  GS +D    F  
Sbjct: 320 FTFSSIIKICNHIEAFEYGKQIHAHICKHNIQSDEFIGSTLIELYSLLGSTEDQLKCFNS 379

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
           +   D  SW  MI GY ++G  E AL  F  +L  G  PDE     +LSAC+ +     G
Sbjct: 380 TPKLDIVSWTTMIAGYAQNGQFESALALFYELLASGKKPDEFIITTMLSACADVAAERSG 439

Query: 475 KK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           ++ H  ++K   G    +++    I +  ++G     +    E K  P+ + W  ++ + 
Sbjct: 440 EQVHGYAVKTGIGTLAIVQN--SQISMYAKSGNLDSAKITFEEIK-NPDVVSWSVMICSN 496

Query: 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
           + HG+     KDA  L EL   M+S  + P+ I+        F GV    S  G+ +E
Sbjct: 497 AQHGH----AKDAINLFEL---MKSYGIHPNQIT--------FLGVLTACSHGGLVEE 539



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 171/345 (49%), Gaps = 8/345 (2%)

Query: 147 SVKP-NQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSY 205
           SV P +    T LV+ ++++G    G+  HA + K  F     + N  +++Y + G +  
Sbjct: 3   SVFPLDSVAYTKLVQFSSKSGSSIHGKLAHAHMIKTAFNPCLFLLNNFLNLYSKWGEMGN 62

Query: 206 GSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSS 265
             ++F+ ++ +  +S+N L S +       + + +F +  +   K +  ++  +L AC  
Sbjct: 63  AQKLFDRMSERSVISYNILISGYGGMGFYHKAIGLFSEARMACLKLDKFSYAGVLSACGQ 122

Query: 266 LSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
           + D   GK +H   I   L     +   L+DMY K   ++ A + F+S    D  ++ ++
Sbjct: 123 IKDFALGKVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDELDNVSWNSL 182

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC--SPVATLANGRLLHSIAVKT 383
           IT YA+ G  E  LK   KM   G++ N FTL S L  C  +    ++ G+ LH   VK 
Sbjct: 183 ITGYARVGAYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYGKTLHGYTVKQ 242

Query: 384 GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEK----- 438
           G  LD+ V TAL+ MYAK G + DA  +F+ S  ++   +N MI G+++    +K     
Sbjct: 243 GLDLDIVVGTALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQTEDIDKECAYE 302

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           AL+ F  M  +G  P + TF  ++  C+H+   E GK+  + I K
Sbjct: 303 ALKLFSQMQRQGIKPSDFTFSSIIKICNHIEAFEYGKQIHAHICK 347


>gi|449464496|ref|XP_004149965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
 gi|449497665|ref|XP_004160467.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 938

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 199/598 (33%), Positives = 332/598 (55%), Gaps = 4/598 (0%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           +F  M E + +SWN++++  A++   ++    F  M+ + ++ +  +LS +L    +  Y
Sbjct: 217 IFNEMNERDTISWNSIISANAQNTLHEESFRYFHWMRLVHEEINYTTLSILLSICGSVDY 276

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +K G+ VH +A++ G   +  L  +L+ +YS  G + +A  +F R+ + D+++W +++ C
Sbjct: 277 LKWGKGVHGLAVKYGLESNICLCNTLLSVYSDAGRSKDAELIFRRMPERDLISWNSMLAC 336

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             Q G C  A K+F  M     + N    TS + A  +      G+ +H  +   G + +
Sbjct: 337 YVQDGRCLCALKVFAEMLWMKKEINYVTFTSALAACLDPEFFTNGKILHGFVVVLGLQDE 396

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
            ++GN L++ Y +  +++   +VF+ +   D V+WNAL   F +    ++ +  F +++ 
Sbjct: 397 LIIGNTLITFYGKCHKMAEAKKVFQRMPKLDKVTWNALIGGFANNAELNEAVAAF-KLMR 455

Query: 247 KGFKP--NMCTFIVILKACSSLSD-VGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           +G     +  T + IL +C +  D + +G  +HAHT+    D +  V +SL+ MY K G 
Sbjct: 456 EGSTSGVDYITIVNILGSCLTHEDLIKYGIPIHAHTVVTGFDLDQHVQSSLITMYAKCGD 515

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L  +   FD L  K    + AII + A+ G  E ALK   +MR  GI+ ++F  ++ L+ 
Sbjct: 516 LHSSSYIFDQLVFKTSSVWNAIIAANARYGFGEEALKLVVRMRSAGIEFDQFNFSTALSV 575

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
            + +A L  G+ LH   +K G  LD F+  A + MY KCG +DDA  +      R   SW
Sbjct: 576 AADLAMLEEGQQLHGSTIKLGFELDHFIINAAMDMYGKCGELDDALRILPQPTDRSRLSW 635

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I    +HG   KA E F  ML  G  P+ ++FV +LSACSH GL++EG  +++S+  
Sbjct: 636 NTLISISARHGQFHKAKETFHDMLKLGVKPNHVSFVCLLSACSHGGLVDEGLAYYASMTS 695

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
           +YGI P I+H  CMID+LGR+G+  E E FITE  + PN LVW +LL +C  + N++L  
Sbjct: 696 VYGIQPGIEHCVCMIDLLGRSGRLVEAEAFITEMPIPPNDLVWRSLLASCRIYRNLDLGR 755

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           K A+ LLEL+P  +S YV  S++ AT GRW D   VR  + +  I+K+P+ SW++  G
Sbjct: 756 KAAKHLLELDPSDDSAYVLYSNVFATIGRWEDVEDVRGQMGAHKIQKKPAHSWVKWKG 813



 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 141/563 (25%), Positives = 263/563 (46%), Gaps = 16/563 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A+ VF  M E N  SWN +++GY   G   + +  F  +  +  K S F +++++  
Sbjct: 8   INYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFMIASLVTA 67

Query: 61  FANSGYI-KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
              S  + K G   H  AI+ G   D F+  S V  Y+  G+  NA K+F  + D +VV+
Sbjct: 68  CNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEMPDRNVVS 127

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W +++      G  +E    +  MR   +  N+  +  ++ +     D   G  +     
Sbjct: 128 WTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILGHQLLGHAL 187

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K+G E+     N+L+ M+   G ++    +F  +  +D++SWN++ S        ++  R
Sbjct: 188 KFGLETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNTLHEESFR 247

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
            F+ M L   + N  T  ++L  C S+  + +GK +H   +K+ L+ N  +  +L+ +Y 
Sbjct: 248 YFHWMRLVHEEINYTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICLCNTLLSVYS 307

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
            +G  +DA + F  +  +DL ++ +++  Y Q G    ALK F +M     + N  T  S
Sbjct: 308 DAGRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEINYVTFTS 367

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L  C       NG++LH   V  G   ++ +   L+  Y KC  + +A+ VF+     D
Sbjct: 368 ALAACLDPEFFTNGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQRMPKLD 427

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP--DEITFVVVLSAC-SHMGLIEEG-K 475
             +WN +IGG+  +    +A+ AF++M  EG     D IT V +L +C +H  LI+ G  
Sbjct: 428 KVTWNALIGGFANNAELNEAVAAFKLM-REGSTSGVDYITIVNILGSCLTHEDLIKYGIP 486

Query: 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
            H  ++   + +   ++  + +I +  + G      ++I +  +   + VW  ++ A + 
Sbjct: 487 IHAHTVVTGFDLDQHVQ--SSLITMYAKCGDLHS-SSYIFDQLVFKTSSVWNAIIAANAR 543

Query: 536 HGNIELDEKDAEKLLELEPKMES 558
           +G         E+ L+L  +M S
Sbjct: 544 YGF-------GEEALKLVVRMRS 559



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 125/454 (27%), Positives = 208/454 (45%), Gaps = 7/454 (1%)

Query: 95  MYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFV 154
           MYSK G  + A  VF R+ + +  +W  +++   + G   EA   F  +    +KP+ F+
Sbjct: 1   MYSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFM 60

Query: 155 LTSLVRATTETGDQ-RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAI 213
           + SLV A  ++    + G   H    K G   D  VG + V  Y   G VS   ++F  +
Sbjct: 61  IASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEM 120

Query: 214 AHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGK 273
             ++ VSW +L   + D  S  + +  + +M  +G   N     +++ +C  L D+  G 
Sbjct: 121 PDRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILGH 180

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
           QL  H +K  L+       SL+ M+   G + +A   F+ +  +D  ++ +II++ AQ  
Sbjct: 181 QLLGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNT 240

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST 393
             E + + F  MRL   + N  TL+  L+ C  V  L  G+ +H +AVK G   ++ +  
Sbjct: 241 LHEESFRYFHWMRLVHEEINYTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICLCN 300

Query: 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP 453
            L+++Y+  G   DAE +F+    RD  SWN M+  YV+ G    AL+ F  ML      
Sbjct: 301 TLLSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEI 360

Query: 454 DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIEN- 512
           + +TF   L+AC        GK        + G+   +     +I   G+  K  E +  
Sbjct: 361 NYVTFTSALAACLDPEFFTNGKI-LHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKV 419

Query: 513 FITETKLTPNALVWENLLGACSWHGNIELDEKDA 546
           F    KL  + + W  L+G  +   N EL+E  A
Sbjct: 420 FQRMPKL--DKVTWNALIGGFA--NNAELNEAVA 449



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 182/379 (48%), Gaps = 14/379 (3%)

Query: 196 MYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCT 255
           MY + GR++Y   VF+ ++ ++  SWN + S +    S  + +  F  +   G KP+   
Sbjct: 1   MYSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFM 60

Query: 256 FIVILKACSSLSDVGF-GKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
              ++ AC+  S +   G Q H   IK  L  +  VGTS V  Y   G + +A   F+ +
Sbjct: 61  IASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEM 120

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
            ++++ ++T+++ SY+  G  +  +  +++MR EGI  NE  +A  ++ C  +  +  G 
Sbjct: 121 PDRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILGH 180

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
            L   A+K G    +  + +L+ M+  CG I++A ++F     RDT SWN +I    ++ 
Sbjct: 181 QLLGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNT 240

Query: 435 LGEKALEAFRMMLDEGYVPDEITFV---VVLSACSHMGLIEEGKK-HFSSIKKIYGITPT 490
           L E++   F  M     V +EI +    ++LS C  +  ++ GK  H  ++K  YG+   
Sbjct: 241 LHEESFRYFHWMR---LVHEEINYTTLSILLSICGSVDYLKWGKGVHGLAVK--YGLESN 295

Query: 491 IKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLL 550
           I     ++ +   AG+  + E  I       + + W ++L      G      K   ++L
Sbjct: 296 ICLCNTLLSVYSDAGRSKDAE-LIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEML 354

Query: 551 ELEPKMESNYV-FPSDISA 568
            +  K E NYV F S ++A
Sbjct: 355 WM--KKEINYVTFTSALAA 371



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 150/314 (47%), Gaps = 11/314 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  AK+VF+ MP+L+ V+WNAL+ G+A + +  + +  F  M++       +     + G
Sbjct: 413 MAEAKKVFQRMPKLDKVTWNALIGGFANNAELNEAVAAFKLMREGSTSGVDYITIVNILG 472

Query: 61  --FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
               +   IK G  +HA  +  G  LD+ +  SL+ MY+KCG   ++  +F ++      
Sbjct: 473 SCLTHEDLIKYGIPIHAHTVVTGFDLDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSS 532

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            W AII    + G  +EA K+   MR + ++ +QF  ++ +    +      G+ +H   
Sbjct: 533 VWNAIIAANARYGFGEEALKLVVRMRSAGIEFDQFNFSTALSVAADLAMLEEGQQLHGST 592

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K GFE D  + NA + MY + G +    R+      +  +SWN L S    +    +  
Sbjct: 593 IKLGFELDHFIINAAMDMYGKCGELDDALRILPQPTDRSRLSWNTLISISARHGQFHKAK 652

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACS--SLSDVG---FGKQLHAHTIKHSLDGNHVVGTS 293
             F+ ML  G KPN  +F+ +L ACS   L D G   +      + I+  ++  H V   
Sbjct: 653 ETFHDMLKLGVKPNHVSFVCLLSACSHGGLVDEGLAYYASMTSVYGIQPGIE--HCV--C 708

Query: 294 LVDMYDKSGCLEDA 307
           ++D+  +SG L +A
Sbjct: 709 MIDLLGRSGRLVEA 722


>gi|255585273|ref|XP_002533336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526827|gb|EEF29045.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 199/602 (33%), Positives = 327/602 (54%), Gaps = 6/602 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A  +F  M   + V+WN +++GY  SG       L+ SMK        ++  ++LKG
Sbjct: 52  LTFACNLFDEMSHRDTVTWNTMISGYVNSGSLGSAWELYKSMKSFGLMPDAYTFGSILKG 111

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A +  +  GQ VH++ +++G     +   +L+DMY+KC    +A  VF  I   + V+W
Sbjct: 112 VACACRLDVGQQVHSLIVKMGYEEHVYAGSALLDMYAKCERVRDAFMVFKCIPRRNSVSW 171

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I     +G    A  +   M E  V+ +    + L+    E    +    +H  I K
Sbjct: 172 NALIAGFVLEGDHDTAFWLLRCMEEEGVRLDDGTFSPLLTLLDEKKFYKLTMQLHCKIIK 231

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFE-AIAHQDSVSWNALFSRFQDYESPDQGLR 239
           +G + D  V NA ++ Y + G +    RVF+ A+  +D V+WN++ + F  ++  +   +
Sbjct: 232 HGVQFDNTVCNATITSYSQCGSLEDAERVFDGAVGSRDLVTWNSMLAAFLAHDRKETAFK 291

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY- 298
           +F  M   GF+P++ T+  I+ ACS   +   GK LH   IK  L+    +  +++ MY 
Sbjct: 292 LFLDMQQFGFEPDIYTYTTIISACSHKDN---GKSLHGLVIKRGLEQLVPICNAVIAMYL 348

Query: 299 -DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
              S  +EDA   F S+ +KD  ++ +I+T ++Q G +E ALK F  MR   +  + +  
Sbjct: 349 ESSSNSMEDALNVFHSMESKDRVSWNSILTGFSQTGHSENALKLFVHMRFAVVDIDHYAF 408

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           ++ L  CS +ATL  G+ +H + VK+G   + FV+++L+ MY+KCG I+DA   F+ +A 
Sbjct: 409 SAVLRSCSDLATLQLGQQIHVLTVKSGFESNDFVASSLIFMYSKCGMIEDARKSFEKTAK 468

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
             + +WN ++  Y +HG G+ AL  F  M D+    D ITFV  L+ACSH+GL+E+G+  
Sbjct: 469 DSSITWNSIMFAYAQHGQGDVALGLFFQMRDKKVKMDHITFVAALTACSHIGLVEQGRYL 528

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
             S+   YGI+P ++H+AC +D+ GRAG   E +  I      P+A+VW+ LLGAC   G
Sbjct: 529 LKSMASDYGISPRMEHYACAVDLFGRAGYLDEAKALIESMPFDPDAMVWKTLLGACRACG 588

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           +IEL  + A  LLELEP+    YV  S++     RW++ + +  L+  + +KK P  SWI
Sbjct: 589 DIELAAQVASHLLELEPEEHCTYVILSNMYGHLKRWDEKACMARLMRERKVKKVPGWSWI 648

Query: 598 EV 599
           EV
Sbjct: 649 EV 650



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 117/473 (24%), Positives = 220/473 (46%), Gaps = 12/473 (2%)

Query: 72  VVHAMAIRLGCALDKFLSCSLVDMYSKC--GLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
           + H   I+LG + D + + +++  Y++C  G    A  +F  +   D V W  +I+    
Sbjct: 20  ITHCQTIKLGRSADIYATNNILSRYTRCSSGGLTFACNLFDEMSHRDTVTWNTMISGYVN 79

Query: 130 QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
            G    A +++  M+   + P+ +   S+++          G+ +H++I K G+E     
Sbjct: 80  SGSLGSAWELYKSMKSFGLMPDAYTFGSILKGVACACRLDVGQQVHSLIVKMGYEEHVYA 139

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
           G+AL+ MY +  RV     VF+ I  ++SVSWNAL + F      D    +   M  +G 
Sbjct: 140 GSALLDMYAKCERVRDAFMVFKCIPRRNSVSWNALIAGFVLEGDHDTAFWLLRCMEEEGV 199

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
           + +  TF  +L             QLH   IKH +  ++ V  + +  Y + G LEDA  
Sbjct: 200 RLDDGTFSPLLTLLDEKKFYKLTMQLHCKIIKHGVQFDNTVCNATITSYSQCGSLEDAER 259

Query: 310 AFD-SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
            FD ++ ++DL  + +++ ++      E A K F  M+  G + + +T  + ++ CS   
Sbjct: 260 VFDGAVGSRDLVTWNSMLAAFLAHDRKETAFKLFLDMQQFGFEPDIYTYTTIISACSHK- 318

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMY--AKCGSIDDAEAVFKGSALRDTASWNMM 426
              NG+ LH + +K G    + +  A++AMY  +   S++DA  VF     +D  SWN +
Sbjct: 319 --DNGKSLHGLVIKRGLEQLVPICNAVIAMYLESSSNSMEDALNVFHSMESKDRVSWNSI 376

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIY 485
           + G+ + G  E AL+ F  M       D   F  VL +CS +  ++ G++ H  ++K  +
Sbjct: 377 LTGFSQTGHSENALKLFVHMRFAVVDIDHYAFSAVLRSCSDLATLQLGQQIHVLTVKSGF 436

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
                +   + +I +  + G   +      +T    +++ W +++ A + HG 
Sbjct: 437 ESNDFVA--SSLIFMYSKCGMIEDARKSFEKTA-KDSSITWNSIMFAYAQHGQ 486



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 151/339 (44%), Gaps = 38/339 (11%)

Query: 276 HAHTIKHSLDGNHVVGTSLVDMYDK--SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
           H  TIK     +     +++  Y +  SG L  A   FD ++++D   +  +I+ Y  +G
Sbjct: 22  HCQTIKLGRSADIYATNNILSRYTRCSSGGLTFACNLFDEMSHRDTVTWNTMISGYVNSG 81

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST 393
               A + ++ M+  G+  + +T  S L G +    L  G+ +HS+ VK G+   ++  +
Sbjct: 82  SLGSAWELYKSMKSFGLMPDAYTFGSILKGVACACRLDVGQQVHSLIVKMGYEEHVYAGS 141

Query: 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP 453
           AL+ MYAKC  + DA  VFK    R++ SWN +I G+V  G  + A    R M +EG   
Sbjct: 142 ALLDMYAKCERVRDAFMVFKCIPRRNSVSWNALIAGFVLEGDHDTAFWLLRCMEEEGVRL 201

Query: 454 DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGIT-----PTIKHFA--------CMIDI 500
           D+ TF  +L+      L++E        KK Y +T       IKH            I  
Sbjct: 202 DDGTFSPLLT------LLDE--------KKFYKLTMQLHCKIIKHGVQFDNTVCNATITS 247

Query: 501 LGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEK---DAEKLLELEPKME 557
             + G   + E        + + + W ++L A   H   E   K   D ++    EP + 
Sbjct: 248 YSQCGSLEDAERVFDGAVGSRDLVTWNSMLAAFLAHDRKETAFKLFLDMQQ-FGFEPDI- 305

Query: 558 SNYVFPSDISATQGRWNDFSGVRALLSSQGIKK-EPSCS 595
             Y + + ISA   + N  S +  L+  +G+++  P C+
Sbjct: 306 --YTYTTIISACSHKDNGKS-LHGLVIKRGLEQLVPICN 341


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 194/599 (32%), Positives = 338/599 (56%), Gaps = 4/599 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMK--DMEKKFSKFSLSTVLKGF 61
           A+  F  MP  + V WN +++GY ++GD    + LF +M+    E  F+  +L+  L   
Sbjct: 195 ARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFA--TLACFLSVC 252

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           A    + +G  +H++A++ G   +  ++ +L+ MY+KC   D+A ++F  +   D+V W 
Sbjct: 253 AAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWN 312

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            +I+   Q G   EA  +F  M  S  +P+   L SL+ A T+    + G+ +H  I + 
Sbjct: 313 GMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRN 372

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
               D  + +ALV +Y +   V     +++A    D V  + + S +      ++ L++F
Sbjct: 373 CVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMF 432

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
             +L +  KPN  T   +L AC+S+S +  G+++H + ++++ +G   V ++L+DMY K 
Sbjct: 433 RYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKC 492

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G L+ +   F  ++ KD   + ++I+S++Q GE + AL  FR+M +EGIK N  T++S L
Sbjct: 493 GRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSAL 552

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           + C+ +  +  G+ +H + +K     D+F  +AL+ MYAKCG+++ A  VF+    ++  
Sbjct: 553 SACASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNEV 612

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SWN +I  Y  HGL ++++     M +EGY PD +TF+ ++SAC+H GL+EEG + F  +
Sbjct: 613 SWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQLFQCM 672

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
            K Y I P ++HFACM+D+  R+G+  +   FI +    P+A +W  LL AC  H N+EL
Sbjct: 673 TKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPFKPDAGIWGALLHACRVHRNVEL 732

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
            +  +++L +L+P     YV  S+I+A  GRW+  S VR L+    I K P  SW++V+
Sbjct: 733 ADIASQELFKLDPGNSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYSWVDVN 791



 Score =  225 bits (573), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 152/542 (28%), Positives = 262/542 (48%), Gaps = 7/542 (1%)

Query: 4   AKRVFKSMPEL---NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSK--FSLSTVL 58
           A  VF ++P     + + WN L+ G+  +G     +  +  M       S    +L  V+
Sbjct: 89  AVAVFSALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVV 148

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
           K  A  G +  G++VH  A   G A D ++  +L+ MYS  GL  +A   F  +   D V
Sbjct: 149 KSCAALGAVSLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCV 208

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            W  ++    + G    A ++F  MR S  +PN   L   +       D   G  +H++ 
Sbjct: 209 LWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLA 268

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K G E +  V N L+SMY +   +    R+FE +   D V+WN + S        D+ L
Sbjct: 269 VKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEAL 328

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            +F  ML  G +P+  T + +L A + L+ +  GK++H + I++ +  +  + ++LVD+Y
Sbjct: 329 GLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIY 388

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K   +  A   +D+    D+   + +I+ Y   G +E AL+ FR +  + IK N  T+A
Sbjct: 389 FKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVA 448

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L  C+ ++ L  G+ +H   ++  +    +V +AL+ MYAKCG +D +  +F   +L+
Sbjct: 449 SVLPACASISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLK 508

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D  +WN MI  + ++G  ++AL+ FR M  EG   + +T    LSAC+ +  I  GK+  
Sbjct: 509 DEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIH 568

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
             I K   I   I   + +ID+  + G   E+   + E     N + W +++ A   HG 
Sbjct: 569 GVIIK-GPIKADIFAESALIDMYAKCGNM-ELALRVFEFMPDKNEVSWNSIISAYGAHGL 626

Query: 539 IE 540
           ++
Sbjct: 627 VK 628



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 99/219 (45%), Gaps = 8/219 (3%)

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH---VVGTSLVDMYDKSGCLEDAGVAFD 312
            + +L+ C S   +  G Q+HA  +      NH    + T L+ MY  +    DA   F 
Sbjct: 35  LLALLRGCVSAPHLPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAVAVFS 94

Query: 313 SL---ANKDLFAYTAIITSYAQAGEAEMALKCFRKM--RLEGIKSNEFTLASCLNGCSPV 367
           +L   A      +  +I  +  AG   +A+  + KM         +  TL   +  C+ +
Sbjct: 95  ALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAAL 154

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
             ++ GRL+H  A  TG   D++V +AL+ MY+  G + DA   F G   RD   WN+M+
Sbjct: 155 GAVSLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMM 214

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
            GY+K G    A+  FR M   G  P+  T    LS C+
Sbjct: 215 DGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCA 253



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 113/227 (49%), Gaps = 2/227 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++L+  +F  M   + V+WN++++ ++++G+ Q+ + LF  M     K++  ++S+ L  
Sbjct: 495 LDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSA 554

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+   I  G+ +H + I+     D F   +L+DMY+KCG  + AL+VF  + D + V+W
Sbjct: 555 CASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNEVSW 614

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +II+     G  +E+    + M+E   KP+     +L+ A    G    G  +   + K
Sbjct: 615 NSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQLFQCMTK 674

Query: 181 YGFESDTLVGNA-LVSMYMENGRVSYGSRVFEAIAHQ-DSVSWNALF 225
               +  +   A +V +Y  +GR+    +    +  + D+  W AL 
Sbjct: 675 EYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPFKPDAGIWGALL 721



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 8/127 (6%)

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLD---MFVSTALVAMYAKCGSIDDAEAVFK 413
           L + L GC     L  G  +H+ AV +G L +   + + T L+ MY       DA AVF 
Sbjct: 35  LLALLRGCVSAPHLPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAVAVFS 94

Query: 414 G---SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV--PDEITFVVVLSACSHM 468
               +A   +  WN +I G+   G    A+  +  M        PD  T   V+ +C+ +
Sbjct: 95  ALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAAL 154

Query: 469 GLIEEGK 475
           G +  G+
Sbjct: 155 GAVSLGR 161


>gi|14587213|dbj|BAB61147.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|125570436|gb|EAZ11951.1| hypothetical protein OsJ_01824 [Oryza sativa Japonica Group]
          Length = 735

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 208/602 (34%), Positives = 327/602 (54%), Gaps = 12/602 (1%)

Query: 7   VFKSMPEL--NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKF----SKFSLSTVLKG 60
           VF  +P    +V SWN+LLN  +    G + +      + M        S  S +     
Sbjct: 71  VFDDIPPAARDVTSWNSLLNPLS----GHRPLDALSRFRSMLSSSTVLPSPHSFAAAFTA 126

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSC-SLVDMYSKCGLADNALKVFYRIKDPDVVA 119
            A +    AG   HA+A ++  A+     C SL++MY K G+  +A +VF  +   +  +
Sbjct: 127 AARAASAPAGTAAHALACKIPSAVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFS 186

Query: 120 WGAIITCLDQQGCCQEAAKIFNLM-RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           W  ++     + C +EA  +F LM  E   + ++FV T+++ A +       GE +H +I
Sbjct: 187 WSTMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLI 246

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K G      V N+LV+MY + G +     VFE+   ++S++W+A+ + +      D  +
Sbjct: 247 VKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAV 306

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            +F QM   GF P   TF+ +L A S L  +  GKQ H   +K   +    V ++LVDMY
Sbjct: 307 SMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMY 366

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K GC+ DA   FD L   D+  +TA+++ + Q GE E AL  + +M  EGI  ++ T+A
Sbjct: 367 AKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIA 426

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L  C+ +A L  G+ LH+  VK G  L   V +AL  MY+KCG+++D  +VF+    R
Sbjct: 427 SGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDR 486

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D  +WN +I G+ ++G G  AL+ F  M  EG +PD ITF+ +L ACSHMGL++ G ++F
Sbjct: 487 DVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYF 546

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           S + K YG+TP + H+ACM+DIL RAG   E ++FI    +     +W  +LGAC    +
Sbjct: 547 SLMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRD 606

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
            ++     E+L+EL     S Y+  S+I A+Q +WND   VR L+  +G+ K+P CSW+E
Sbjct: 607 FDVGAYAGERLMELGTGDSSAYILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVE 666

Query: 599 VD 600
           ++
Sbjct: 667 LN 668



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 129/427 (30%), Positives = 212/427 (49%), Gaps = 9/427 (2%)

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKC--GLADNALKVFYRIKDP--DVVAWGAI 123
           + G+ +HA A++ G A    ++ SL++ YS     L   A  VF  I     DV +W ++
Sbjct: 29  RHGEALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVTSWNSL 88

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +  L         ++  +++  S+V P+     +   A         G + HA+ CK   
Sbjct: 89  LNPLSGHRPLDALSRFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTAAHALACKIPS 148

Query: 184 E-SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
             S+  V  +L++MY + G VS   RVF+ +  ++S SW+ + + +   +  ++   +F 
Sbjct: 149 AVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLF- 207

Query: 243 QMLLKGFKPNMCTFI--VILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           +++L+        F+   +L A S    +  G+Q+H   +K  L     V  SLV MY K
Sbjct: 208 RLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAK 267

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
           +GC+  A   F+S   ++   ++A+IT YAQ GEA+ A+  F +M   G    EFT    
Sbjct: 268 AGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGV 327

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           LN  S +  LA G+  H + VK G  + ++V +ALV MYAKCG I DA+  F      D 
Sbjct: 328 LNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDI 387

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
             W  M+ G+V++G  E+AL  +  M  EG +P + T    L AC+ +  +E GK+  + 
Sbjct: 388 VLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQ 447

Query: 481 IKKIYGI 487
           I K YG+
Sbjct: 448 IVK-YGL 453



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 121/433 (27%), Positives = 212/433 (48%), Gaps = 11/433 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLKGFA 62
           A+RVF  MP+ N  SW+ ++ GYA     ++   LF  M ++   + S+F  + VL   +
Sbjct: 172 ARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAVLSAVS 231

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSC--SLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
               +  G+ +H + ++ G  L  F+S   SLV MY+K G    A  VF   ++ + + W
Sbjct: 232 VPLGLLMGEQMHGLIVKDG--LLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITW 289

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+IT   Q G    A  +F+ M  +   P +F    ++ A+++ G    G+  H ++ K
Sbjct: 290 SAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVK 349

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GFE    V +ALV MY + G ++     F+ +   D V W A+ S        ++ L +
Sbjct: 350 LGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTL 409

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           + +M  +G  P+  T    L+AC+ ++ +  GKQLH   +K+ L     VG++L  MY K
Sbjct: 410 YARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSK 469

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G LED    F  + ++D+ A+ +II+ ++Q G    AL  F +M++EG   +  T  + 
Sbjct: 470 CGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINI 529

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHL---LDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           L  CS +  +  G    S+  K   L   LD +    +V + ++ G + +A+   +   +
Sbjct: 530 LCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHY--ACMVDILSRAGMLKEAKDFIESITI 587

Query: 418 -RDTASWNMMIGG 429
              T  W +++G 
Sbjct: 588 DHGTCLWRIVLGA 600



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 161/308 (52%), Gaps = 1/308 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A  VF+S  E N ++W+A++ GYA++G+    + +F  M       ++F+   VL  
Sbjct: 271 MGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNA 330

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ++ G +  G+  H + ++LG  +  ++  +LVDMY+KCG   +A + F ++ + D+V W
Sbjct: 331 SSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLW 390

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+++   Q G  +EA  ++  M +  + P++  + S +RA         G+ +H  I K
Sbjct: 391 TAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVK 450

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           YG      VG+AL +MY + G +  G  VF  I  +D ++WN++ S F      +  L +
Sbjct: 451 YGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDL 510

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK-HSLDGNHVVGTSLVDMYD 299
           F +M ++G  P+  TFI IL ACS +  V  G +  +   K + L         +VD+  
Sbjct: 511 FEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILS 570

Query: 300 KSGCLEDA 307
           ++G L++A
Sbjct: 571 RAGMLKEA 578



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 118/410 (28%), Positives = 192/410 (46%), Gaps = 17/410 (4%)

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGR--VSYGSRVFEAI--AHQDSVSWNAL 224
           R GE++HA   K G  S   V N+L++ Y    R  ++    VF+ I  A +D  SWN+L
Sbjct: 29  RHGEALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVTSWNSL 88

Query: 225 FSRFQDYESPDQGLRIFYQMLLKG-FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK-H 282
            +    +  P   L  F  ML      P+  +F     A +  +    G   HA   K  
Sbjct: 89  LNPLSGHR-PLDALSRFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTAAHALACKIP 147

Query: 283 SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCF 342
           S   N  V TSL++MY K G + DA   FD +  ++ F+++ ++  YA    +E A   F
Sbjct: 148 SAVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLF 207

Query: 343 RKMRLE-GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAK 401
           R M  E   + +EF   + L+  S    L  G  +H + VK G L  + V  +LV MYAK
Sbjct: 208 RLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAK 267

Query: 402 CGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVV 461
            G +  A  VF+ S  R++ +W+ MI GY ++G  + A+  F  M   G+ P E TFV V
Sbjct: 268 AGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGV 327

Query: 462 LSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTP 521
           L+A S +G +  GK+    + K+ G    I   + ++D+  + G   + +    +     
Sbjct: 328 LNASSDLGALAVGKQAHGLMVKL-GFEVQIYVKSALVDMYAKCGCIADAKEGFDQL-YEV 385

Query: 522 NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQG 571
           + ++W  ++      G+++  E   E+ L L  +M+   + PS  +   G
Sbjct: 386 DIVLWTAMVS-----GHVQNGEH--EEALTLYARMDKEGIIPSKSTIASG 428


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 204/603 (33%), Positives = 330/603 (54%), Gaps = 14/603 (2%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMH---LFCSMKDMEKKFSKFSLSTVLK 59
           LA+  F  +   +V +WN +++GY  +G+  +V+    LF     +   +  F   +VLK
Sbjct: 104 LARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFP--SVLK 161

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
                  +  G  +H +A++ G   D +++ SL+ +YS+     NA  +F  +   D+ +
Sbjct: 162 ACRT---VIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGS 218

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W A+I+   Q G  +EA  + N +R      +   + SL+ A TE GD   G +IH+   
Sbjct: 219 WNAMISGYCQSGNAKEALTLSNGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSI 274

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K+G ES+  V N L+ +Y E GR+    +VF+ +  +D +SWN++   ++  E P + + 
Sbjct: 275 KHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAIS 334

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGTSLVDMY 298
           +F +M L   +P+  T I +    S L D+   + +   T++       + +G ++V MY
Sbjct: 335 LFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMY 394

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG-IKSNEFTL 357
            K G ++ A   F+ L N D+ ++  II+ YAQ G A  A++ +  M  EG I +N+ T 
Sbjct: 395 AKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTW 454

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
            S L  CS    L  G  LH   +K G  LD+FV T+L  MY KCG ++DA ++F     
Sbjct: 455 VSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPR 514

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
            ++  WN +I  +  HG GEKA+  F+ MLDEG  PD ITFV +LSACSH GL++EG+  
Sbjct: 515 VNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWC 574

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F  ++  YGITP++KH+ CM+D+ GRAG+      FI    L P+A +W  LL AC  HG
Sbjct: 575 FEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHG 634

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           N++L +  +E L E+EP+    +V  S++ A+ G+W     +R++   +G++K P  S +
Sbjct: 635 NVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSM 694

Query: 598 EVD 600
           EVD
Sbjct: 695 EVD 697



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 137/505 (27%), Positives = 239/505 (47%), Gaps = 21/505 (4%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +++ + +HA  +      +  +S  LV++Y   G    A   F  I++ DV AW  +I+ 
Sbjct: 67  LQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISG 126

Query: 127 LDQQGCCQEAAKIFNL-MRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
             + G   E  + F+L M  S + P+     S+++A     D   G  IH +  K+GF  
Sbjct: 127 YGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKFGFMW 183

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           D  V  +L+ +Y     V     +F+ +  +D  SWNA+ S +    +  + L      L
Sbjct: 184 DVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEAL-----TL 238

Query: 246 LKGFKP-NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
             G +  +  T + +L AC+   D   G  +H+++IKH L+    V   L+D+Y + G L
Sbjct: 239 SNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRL 298

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
            D    FD +  +DL ++ +II +Y    +   A+  F++MRL  I+ +  TL S  +  
Sbjct: 299 RDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASIL 358

Query: 365 SPVATLANGRLLHSIAVKTGHLL-DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           S +  +   R +    ++ G  L D+ +  A+V MYAK G +D A AVF      D  SW
Sbjct: 359 SQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISW 418

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYV-PDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           N +I GY ++G   +A+E + +M +EG +  ++ T+V VL ACS  G + +G K    + 
Sbjct: 419 NTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLL 478

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           K  G+   +     + D+ G+ G+  +  +   +     N++ W  L+    +HG+    
Sbjct: 479 K-NGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRV-NSVPWNTLIACHGFHGH---- 532

Query: 543 EKDAEKLLELEPKMESNYVFPSDIS 567
               EK + L  +M    V P  I+
Sbjct: 533 ---GEKAVMLFKEMLDEGVKPDHIT 554



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 136/279 (48%), Gaps = 21/279 (7%)

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKD 318
           + + C++L      K LHA  +      N  +   LV++Y   G +  A   FD + N+D
Sbjct: 60  LFRYCTNLQS---AKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRD 116

Query: 319 LFAYTAIITSYAQAGEAEMALKCFRKMRL-EGIKSNEFTLASCLNGCSPVATLANGRLLH 377
           ++A+  +I+ Y +AG +   ++CF    L  G+  +  T  S L  C    T+ +G  +H
Sbjct: 117 VYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACR---TVIDGNKIH 173

Query: 378 SIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGE 437
            +A+K G + D++V+ +L+ +Y++  ++ +A  +F    +RD  SWN MI GY + G  +
Sbjct: 174 CLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAK 233

Query: 438 KAL---EAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKH 493
           +AL      R M       D +T V +LSAC+  G    G   H  SIK  +G+   +  
Sbjct: 234 EALTLSNGLRAM-------DSVTVVSLLSACTEAGDFNRGVTIHSYSIK--HGLESELFV 284

Query: 494 FACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
              +ID+    G+  + +  + +     + + W +++ A
Sbjct: 285 SNKLIDLYAEFGRLRDCQK-VFDRMYVRDLISWNSIIKA 322



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 4/134 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  +F  +P +N V WN L+  +   G G+K + LF  M D   K    +  T+L  
Sbjct: 502 LEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSA 561

Query: 61  FANSGYIKAGQ-VVHAMAIRLGCALD-KFLSCSLVDMYSKCGLADNALKVFYRIK-DPDV 117
            ++SG +  GQ     M    G     K   C +VDMY + G  + ALK    +   PD 
Sbjct: 562 CSHSGLVDEGQWCFEMMQTDYGITPSLKHYGC-MVDMYGRAGQLETALKFIKSMSLQPDA 620

Query: 118 VAWGAIITCLDQQG 131
             WGA+++     G
Sbjct: 621 SIWGALLSACRVHG 634


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 209/615 (33%), Positives = 321/615 (52%), Gaps = 19/615 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKV--MHLFCSMKDMEKKFSKFSLSTVLKGF 61
           A  +F  +P  +V ++N L+  Y+ S        +HL+  M       + ++    LK  
Sbjct: 76  AHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKAC 135

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           +       G+ +H  AI  G   D F+S +L+DMY KC    +A  +F  +   D+VAW 
Sbjct: 136 SALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWN 195

Query: 122 AIITCLDQQGCCQEA-AKIFNL-MRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           A++      G    A A + ++ M+   ++PN   L +L+    + G    G S+HA   
Sbjct: 196 AMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRI 255

Query: 180 KYGFESD----------TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
           +    S+           L+G AL+ MY + G + Y  RVF+A+  ++ V+W+AL   F 
Sbjct: 256 RACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFV 315

Query: 230 DYESPDQGLRIFYQMLLKGF---KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDG 286
                 Q   +F  ML +G     P   +    L+AC+SL  +  G+QLHA   K  +  
Sbjct: 316 LCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACASLDHLRMGEQLHALLAKSGVHA 373

Query: 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR 346
           +   G SL+ MY K+G ++ A   FD +A KD  +Y+A+++ Y Q G AE A   F+KM+
Sbjct: 374 DLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQ 433

Query: 347 LEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSID 406
              ++ +  T+ S +  CS +A L +GR  H   +  G   +  +  AL+ MYAKCG ID
Sbjct: 434 ACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRID 493

Query: 407 DAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
            +  VF     RD  SWN MI GY  HGLG++A   F  M + G+ PD +TF+ +LSACS
Sbjct: 494 LSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACS 553

Query: 467 HMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVW 526
           H GL+ EGK  F  ++  YG+TP ++H+ CM+D+L R G   E   FI    L  +  VW
Sbjct: 554 HSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVW 613

Query: 527 ENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQ 586
             LLGAC  + NI+L +K +  + EL P+   N+V  S+I +  GR+++ + VR +   Q
Sbjct: 614 VALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQ 673

Query: 587 GIKKEPSCSWIEVDG 601
           G KK P CSWIE++G
Sbjct: 674 GFKKSPGCSWIEING 688



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 109/242 (45%), Gaps = 2/242 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  +F  M   + VS++AL++GY ++G  ++   +F  M+    +    ++ +++  
Sbjct: 391 IDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPA 450

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ++   ++ G+  H   I  G A +  +  +L+DMY+KCG  D + +VF  +   D+V+W
Sbjct: 451 CSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSW 510

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES-IHAVIC 179
             +I      G  +EA  +F  M      P+      L+ A + +G    G+   H +  
Sbjct: 511 NTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRH 570

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS-WNALFSRFQDYESPDQGL 238
            YG          +V +    G +       +++  +  V  W AL    + Y++ D G 
Sbjct: 571 GYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGK 630

Query: 239 RI 240
           ++
Sbjct: 631 KV 632


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 191/596 (32%), Positives = 327/596 (54%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A RVF+ + +     ++ +L GYA++   +  +   C M+  + K   ++ + +LK   +
Sbjct: 100 AARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGD 159

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +  +K G+ +H   I    A + F    +V+MY+KC   D+A K+F R+ + D+V+W  I
Sbjct: 160 NADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTI 219

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q G  ++A ++   M++   +P+   L +++ A  + G    G+SIH    + GF
Sbjct: 220 IAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGF 279

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
                +  AL  MY + G V     +F+ +  +  VSWN++   +     P++ + +F +
Sbjct: 280 AKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEK 339

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           ML +G  P   T +  L AC+ L D+  GK +H    + +L  +  V  SL+ MY K   
Sbjct: 340 MLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKR 399

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++ A   F++L  +   ++ A+I  YAQ G    AL CF +M+  G+K + FT+ S +  
Sbjct: 400 VDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPA 459

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
            + ++   + + +H + +++    ++FV+TALV MY+KCG+I  A  +F   + R   +W
Sbjct: 460 LAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITW 519

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N MI GY  HGLG  AL+ F  M      P++IT++ V+SACSH GL++EG +HF S+K+
Sbjct: 520 NAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQ 579

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            YG+ P++ H+  M+D+LGRAG+  E  +FI    ++P   V+    GAC  H NIE+ E
Sbjct: 580 DYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVGE 639

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           K A+KL EL P     +V  ++I A+  +W+  + VR  +  +G+KK P CS +E+
Sbjct: 640 KAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVEL 695



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 187/400 (46%)

Query: 76  MAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQE 135
           + I+ G   +      LV ++SK G  + A +VF  I D     +  ++    +    + 
Sbjct: 71  LVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLET 130

Query: 136 AAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVS 195
           A      MR   VKP  +  T L++   +  D + G+ IH  +    F ++      +V+
Sbjct: 131 ALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVN 190

Query: 196 MYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCT 255
           MY +  ++    ++F+ +  +D VSWN + + F       + L +  +M  +G +P+  T
Sbjct: 191 MYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSIT 250

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
            + +L A + +  +  GK +H + I+        + T+L DMY K G +E A + FD + 
Sbjct: 251 LVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMD 310

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRL 375
            K + ++ +++  Y Q GE E A+  F KM  EGI     T+   L+ C+ +  L  G+ 
Sbjct: 311 QKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKF 370

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           +H    +     D+ V  +L++MY+KC  +D A  +F     R   SWN MI GY ++G 
Sbjct: 371 VHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGR 430

Query: 436 GEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
             +AL  F  M   G  PD  T V V+ A + + +    K
Sbjct: 431 VSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAK 470



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 155/309 (50%), Gaps = 3/309 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ +F  M +  VVSWN++++GY ++G+ +K + +F  M +     +  ++   L  
Sbjct: 299 VETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHA 358

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+ G ++ G+ VH    +L    D  +  SL+ MYSKC   D A  +F  +     V+W
Sbjct: 359 CADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSW 418

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    Q G   EA   F+ M+   +KP+ F + S++ A  E    R  + IH +I +
Sbjct: 419 NAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIR 478

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              + +  V  ALV MY + G +    ++F+ I+ +  ++WNA+   +  +      L +
Sbjct: 479 SCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDL 538

Query: 241 FYQMLLKGFKPNMCTFIVILKAC--SSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           F +M     +PN  T++ ++ AC  S L D G  +   +    + L+ +     ++VD+ 
Sbjct: 539 FDKMKKGAVEPNDITYLSVISACSHSGLVDEGL-RHFKSMKQDYGLEPSMDHYGAMVDLL 597

Query: 299 DKSGCLEDA 307
            ++G +++A
Sbjct: 598 GRAGRIKEA 606



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 83/200 (41%), Gaps = 22/200 (11%)

Query: 376 LHSI---AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
           LH I    +K G   +    T LV++++K GSI++A  VF+    +  A ++ M+ GY K
Sbjct: 65  LHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAK 124

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK 492
           +   E AL     M  +   P    F  +L  C     ++ G       K+I+G   T  
Sbjct: 125 NSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRG-------KEIHGQLITNS 177

Query: 493 HFA---CMIDILGRAGKFTEIENFITETKLTP--NALVWENLLGACSWHGNIELDEKDAE 547
             A    M  ++    K  +I++        P  + + W  ++   S +G        A+
Sbjct: 178 FAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGF-------AK 230

Query: 548 KLLELEPKMESNYVFPSDIS 567
           K LEL  +M+     P  I+
Sbjct: 231 KALELVLRMQDEGQRPDSIT 250


>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Brachypodium distachyon]
          Length = 805

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 202/606 (33%), Positives = 320/606 (52%), Gaps = 43/606 (7%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A R+F  M   N VS+ A++ G  ++G     + LF  M     +    ++S+VL  
Sbjct: 191 VEDAVRLFDGMASPNEVSFTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGS 250

Query: 61  FANS--------GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI 112
            A +           + GQ +HA+ +R G   D+ +  SL+DMY+KC   D A+KVF  +
Sbjct: 251 CAQACASEFDVVRAFRLGQCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSL 310

Query: 113 KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172
            +   V+W  +IT   Q G   +A ++ NLM ES  +PN+   ++++ +  +        
Sbjct: 311 PNISTVSWNILITGFGQAGSYAKALEVLNLMEESGSEPNEVTYSNMLASCIKA------- 363

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
                        D L   A+                F+ I+     +WN L S +   E
Sbjct: 364 ------------RDVLSARAM----------------FDKISRPSVTTWNTLLSGYCQEE 395

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
                + +F +M  +  +P+  T  VIL +CS L  +  G Q+H+ +++  L  +  V +
Sbjct: 396 LHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGILDLGTQVHSASVRFLLHNDMFVAS 455

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
            LVDMY K G +  A + F+ +  +D+  + ++I+  A     E A   F++MR  G+  
Sbjct: 456 GLVDMYSKCGQIGIARIIFNRMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRGNGMMP 515

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
            E + AS +N C+ ++++  GR +H+  VK G+  +++V +AL+ MYAKCG++DDA   F
Sbjct: 516 TESSYASMINSCARLSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCGNMDDARVFF 575

Query: 413 KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE 472
                ++  +WN MI GY ++G GEKA++ F  ML     PD +TF+ VL+ CSH GL++
Sbjct: 576 DCMVTKNIVAWNEMIHGYAQNGFGEKAVDLFEYMLTTEQRPDGVTFIAVLTGCSHSGLVD 635

Query: 473 EGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
           E    F+S++  YGITP  +H+ C+ID LGRAG+  E+E  I       + +VWE LL A
Sbjct: 636 EAIAFFNSMESTYGITPLAEHYTCLIDGLGRAGRLVEVEALIDNMPCKDDPIVWEVLLAA 695

Query: 533 CSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEP 592
           C+ H N EL E  A+ L  L+PK  S YV  S+I A+ GR  D SGVRAL+SS+G+ K  
Sbjct: 696 CAVHHNAELGECAAKHLFRLDPKNPSPYVLLSNIYASLGRHGDASGVRALMSSRGVVKGR 755

Query: 593 SCSWIE 598
             SWI+
Sbjct: 756 GYSWID 761



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 126/527 (23%), Positives = 218/527 (41%), Gaps = 85/527 (16%)

Query: 81  GCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD------------------------ 116
           G   D FL   LV++YS  GL  +AL+ F  +  P+                        
Sbjct: 38  GLGADTFLINRLVELYSVSGLPCDALRAFRSLPRPNAYSYNAALSAARRAGDLDAARALL 97

Query: 117 -------VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
                  VV+W  +I  L +     EA +++  M    + P  F L S++ A        
Sbjct: 98  DEMPDRNVVSWNTVIAALARSERAGEALELYEGMLREGLVPTHFTLASVLSACGAVAALD 157

Query: 170 CGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
            G   H +  K G + +  V NAL+ MY + G V    R+F+ +A  + VS+ A+     
Sbjct: 158 DGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVSFTAMMGGLV 217

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVIL----KACSSLSDV----GFGKQLHAHTIK 281
              S D  LR+F +M   G + +      +L    +AC+S  DV      G+ +HA  ++
Sbjct: 218 QAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACASEFDVVRAFRLGQCIHALIVR 277

Query: 282 HSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKC 341
                +  VG SL+DMY K   +++A   FDSL N    ++  +IT + QAG    AL+ 
Sbjct: 278 KGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWNILITGFGQAGSYAKALEV 337

Query: 342 FRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAK 401
              M   G + NE T ++ L  C                                    K
Sbjct: 338 LNLMEESGSEPNEVTYSNMLASC-----------------------------------IK 362

Query: 402 CGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVV 461
              +  A A+F   +     +WN ++ GY +  L +  +E FR M  +   PD  T  V+
Sbjct: 363 ARDVLSARAMFDKISRPSVTTWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVI 422

Query: 462 LSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLT 520
           LS+CS +G+++ G + H +S++  + +   +   + ++D+  + G+   I   I      
Sbjct: 423 LSSCSRLGILDLGTQVHSASVR--FLLHNDMFVASGLVDMYSKCGQIG-IARIIFNRMTE 479

Query: 521 PNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            + + W +++   + H    L+    E+  +   +M  N + P++ S
Sbjct: 480 RDVVCWNSMISGLAIH---SLN----EEAFDFFKQMRGNGMMPTESS 519



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 61/154 (39%), Gaps = 34/154 (22%)

Query: 357 LASCLNGC---SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYA------------- 400
           LA  L  C   SP  + A+ R  H+  +  G   D F+   LV +Y+             
Sbjct: 8   LAGVLQACIKRSPKPSRAHARAAHARVLAAGLGADTFLINRLVELYSVSGLPCDALRAFR 67

Query: 401 ------------------KCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEA 442
                             + G +D A A+      R+  SWN +I    +     +ALE 
Sbjct: 68  SLPRPNAYSYNAALSAARRAGDLDAARALLDEMPDRNVVSWNTVIAALARSERAGEALEL 127

Query: 443 FRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
           +  ML EG VP   T   VLSAC  +  +++G++
Sbjct: 128 YEGMLREGLVPTHFTLASVLSACGAVAALDDGRR 161


>gi|125525985|gb|EAY74099.1| hypothetical protein OsI_01984 [Oryza sativa Indica Group]
          Length = 735

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 205/598 (34%), Positives = 325/598 (54%), Gaps = 4/598 (0%)

Query: 7   VFKSMPEL--NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANS 64
           VF  +P    +V SWN+LLN  +       +      +       S  S +      A +
Sbjct: 71  VFDDIPPAARDVASWNSLLNPLSRHRPLDALSRFRSMLSSSTVLPSPHSFAAAFTAAARA 130

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSC-SLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
               AG   HA+A ++  A+     C SL++MY K G+  +A ++F  +   +  +W  +
Sbjct: 131 ASAPAGTAAHALACKIPSAVSNVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTM 190

Query: 124 ITCLDQQGCCQEAAKIFNLM-RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +     + C +EA  +F LM  E   + ++FV T+++ A +       GE +H +I K G
Sbjct: 191 VAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDG 250

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
                 V N+LV+MY + G +     VFE+   ++S++W+A+ + +      D  + +F 
Sbjct: 251 LLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFS 310

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           QM   GF P   TF+ +L A S L  +  GKQ H   +K   +    V ++LVDMY K G
Sbjct: 311 QMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCG 370

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
           C+ DA   FD L   D+  +TA+++ + Q GE E AL  + +M  EGI  ++ T+AS L 
Sbjct: 371 CIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLR 430

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+ +A L  G+ LH+  VK G  L   V +AL  MY+KCG+++D  +VF+    RD  +
Sbjct: 431 ACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIA 490

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN +I G+ ++G G  AL+ F  M  EG +PD ITF+ +L ACSHMGL++ G ++FS + 
Sbjct: 491 WNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMT 550

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           K YG+TP + H+ACM+DIL RAG   E ++FI    +     +W  +LGAC    + ++ 
Sbjct: 551 KDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVG 610

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
               E+L+EL  +  S Y+  S+I A+Q +WND   VR L+  +G+ K+P CSW+E++
Sbjct: 611 AYAGERLMELGTRDSSAYILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVELN 668



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 128/427 (29%), Positives = 213/427 (49%), Gaps = 9/427 (2%)

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKC--GLADNALKVFYRIKDP--DVVAWGAI 123
           + G+ +HA A++ G A    ++ SL++ YS     L   A  VF  I     DV +W ++
Sbjct: 29  RHGEALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVASWNSL 88

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +  L +       ++  +++  S+V P+     +   A         G + HA+ CK   
Sbjct: 89  LNPLSRHRPLDALSRFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTAAHALACKIPS 148

Query: 184 E-SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
             S+  V  +L++MY + G VS   R+F+ +  ++S SW+ + + +   +  ++   +F 
Sbjct: 149 AVSNVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLF- 207

Query: 243 QMLLKGFKPNMCTFI--VILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           +++L+        F+   +L A S    +  G+Q+H   +K  L     V  SLV MY K
Sbjct: 208 RLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAK 267

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
           +GC+  A   F+S   ++   ++A+IT YAQ GEA+ A+  F +M   G    EFT    
Sbjct: 268 AGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGV 327

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           LN  S +  LA G+  H + VK G  + ++V +ALV MYAKCG I DA+  F      D 
Sbjct: 328 LNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDI 387

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
             W  M+ G+V++G  E+AL  +  M  EG +P + T    L AC+ +  +E GK+  + 
Sbjct: 388 VLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQ 447

Query: 481 IKKIYGI 487
           I K YG+
Sbjct: 448 IVK-YGL 453



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 120/433 (27%), Positives = 212/433 (48%), Gaps = 11/433 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLKGFA 62
           A+R+F  MP+ N  SW+ ++ GYA     ++   LF  M ++   + S+F  + VL   +
Sbjct: 172 ARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAVLSAVS 231

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSC--SLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
               +  G+ +H + ++ G  L  F+S   SLV MY+K G    A  VF   ++ + + W
Sbjct: 232 VPLGLLMGEQMHGLIVKDG--LLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITW 289

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+IT   Q G    A  +F+ M  +   P +F    ++ A+++ G    G+  H ++ K
Sbjct: 290 SAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVK 349

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GFE    V +ALV MY + G ++     F+ +   D V W A+ S        ++ L +
Sbjct: 350 LGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTL 409

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           + +M  +G  P+  T    L+AC+ ++ +  GKQLH   +K+ L     VG++L  MY K
Sbjct: 410 YARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSK 469

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G LED    F  + ++D+ A+ +II+ ++Q G    AL  F +M++EG   +  T  + 
Sbjct: 470 CGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINI 529

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHL---LDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           L  CS +  +  G    S+  K   L   LD +    +V + ++ G + +A+   +   +
Sbjct: 530 LCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHY--ACMVDILSRAGMLKEAKDFIESITI 587

Query: 418 -RDTASWNMMIGG 429
              T  W +++G 
Sbjct: 588 DHGTCLWRIVLGA 600



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 161/308 (52%), Gaps = 1/308 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A  VF+S  E N ++W+A++ GYA++G+    + +F  M       ++F+   VL  
Sbjct: 271 MGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNA 330

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ++ G +  G+  H + ++LG  +  ++  +LVDMY+KCG   +A + F ++ + D+V W
Sbjct: 331 SSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLW 390

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+++   Q G  +EA  ++  M +  + P++  + S +RA         G+ +H  I K
Sbjct: 391 TAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVK 450

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           YG      VG+AL +MY + G +  G  VF  I  +D ++WN++ S F      +  L +
Sbjct: 451 YGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDL 510

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK-HSLDGNHVVGTSLVDMYD 299
           F +M ++G  P+  TFI IL ACS +  V  G +  +   K + L         +VD+  
Sbjct: 511 FEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILS 570

Query: 300 KSGCLEDA 307
           ++G L++A
Sbjct: 571 RAGMLKEA 578



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 118/410 (28%), Positives = 192/410 (46%), Gaps = 17/410 (4%)

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGR--VSYGSRVFEAI--AHQDSVSWNAL 224
           R GE++HA   K G  S   V N+L++ Y    R  ++    VF+ I  A +D  SWN+L
Sbjct: 29  RHGEALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVASWNSL 88

Query: 225 FSRFQDYESPDQGLRIFYQMLLKG-FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK-H 282
            +    +  P   L  F  ML      P+  +F     A +  +    G   HA   K  
Sbjct: 89  LNPLSRHR-PLDALSRFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTAAHALACKIP 147

Query: 283 SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCF 342
           S   N  V TSL++MY K G + DA   FD +  ++ F+++ ++  YA    +E A   F
Sbjct: 148 SAVSNVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLF 207

Query: 343 RKMRLE-GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAK 401
           R M  E   + +EF   + L+  S    L  G  +H + VK G L  + V  +LV MYAK
Sbjct: 208 RLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAK 267

Query: 402 CGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVV 461
            G +  A  VF+ S  R++ +W+ MI GY ++G  + A+  F  M   G+ P E TFV V
Sbjct: 268 AGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGV 327

Query: 462 LSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTP 521
           L+A S +G +  GK+    + K+ G    I   + ++D+  + G   + +    +     
Sbjct: 328 LNASSDLGALAVGKQAHGLMVKL-GFEVQIYVKSALVDMYAKCGCIADAKEGFDQL-YEV 385

Query: 522 NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQG 571
           + ++W  ++      G+++  E   E+ L L  +M+   + PS  +   G
Sbjct: 386 DIVLWTAMVS-----GHVQNGEH--EEALTLYARMDKEGIIPSKSTIASG 428


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 211/602 (35%), Positives = 336/602 (55%), Gaps = 10/602 (1%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E  + +F  M   NVVSW +LL+GYA +G   +V+HL   M+      + F+ +TVL   
Sbjct: 156 EDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGAL 215

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           A+   I+ G  VHAM ++ G     F+  +L+ MY K  +  +A  VF  +   D V W 
Sbjct: 216 ADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWN 275

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            +I      G   E  ++F+ MR + VK ++ V  + ++  ++  +    + +H  + K 
Sbjct: 276 IMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKN 335

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFE-AIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           G+E    +  AL+  Y +   V    ++F  A A  + V+W A+   F    +  + + +
Sbjct: 336 GYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDL 395

Query: 241 FYQMLLKGFKPNMCTFIVIL--KACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           F QM  +G +PN  T+  +L  K  S LS      QLHA  IK   +    V T+L+D Y
Sbjct: 396 FCQMSREGVRPNHFTYSTVLAGKPSSLLS------QLHAQIIKAYYEKVPSVATALLDAY 449

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K+G + ++   F S+  KD+ A++A++T  AQ  ++E A++ F ++  EG+K NE+T +
Sbjct: 450 VKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFS 509

Query: 359 SCLNGCSP-VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           S +N CS   AT+ +G+ +H+ AVK+G    + VS+AL+ MY+K G+I+ AE VF     
Sbjct: 510 SVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEE 569

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           RD  SWN MI GY +HG  +KALE F++M ++G   D++TF+ VL+AC+H GL+EEG+K+
Sbjct: 570 RDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKY 629

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F+ + K Y I    +H++CM+D+  RAG F +  + I       +  +W  LL AC  H 
Sbjct: 630 FNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHR 689

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           N+EL +  AEKL+ L+P     YV  S+I A  G W + + VR L+  + +KKE  CSWI
Sbjct: 690 NLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWI 749

Query: 598 EV 599
           E+
Sbjct: 750 EI 751



 Score =  211 bits (538), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 151/567 (26%), Positives = 276/567 (48%), Gaps = 17/567 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A ++F   P  ++  +N LL  ++ +   ++ +HLF  +          +LS  LK    
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G+ VH  +++ G   D  +  SLVDMY K    ++   +F  +   +VV+W ++
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSL 176

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           ++   + G   E   + N M+   V PN F   +++ A  +      G  +HA+I K GF
Sbjct: 177 LSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGF 236

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E  T V NAL+ MY+++  V     VF+++  +DSV+WN +   +       +G ++F++
Sbjct: 237 EFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHR 296

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M L G K +   F   LK CS   ++ F KQLH   +K+  +    + T+L+  Y K   
Sbjct: 297 MRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSS 356

Query: 304 LEDAGVAFD-SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
           +++A   F  + A  ++  +TA+I  + Q    + A+  F +M  EG++ N FT ++ L 
Sbjct: 357 VDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLA 416

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
           G  P + L+    LH+  +K  +     V+TAL+  Y K G++ ++  VF     +D  +
Sbjct: 417 G-KPSSLLSQ---LHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVA 472

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC-SHMGLIEEGKK-HFSS 480
           W+ M+ G  +    EKA+E F  ++ EG  P+E TF  V++AC S    +E GK+ H ++
Sbjct: 473 WSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATA 532

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +K   G +  +   + ++ +  + G     E   T  +   + + W +++     HG   
Sbjct: 533 VKS--GKSNALCVSSALLTMYSKKGNIESAEKVFTRQE-ERDIVSWNSMITGYGQHG--- 586

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDIS 567
               DA+K LE+   M++  +   D++
Sbjct: 587 ----DAKKALEVFQIMQNQGLPLDDVT 609



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/471 (26%), Positives = 209/471 (44%), Gaps = 20/471 (4%)

Query: 105 ALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTE 164
           A ++F      D+  +  ++    +    +EA  +F  +  S +  +   L+  ++    
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 165 TGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNAL 224
             DQ  G  +H    K GF  D  VG +LV MYM+      G  +F+ +  ++ VSW +L
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSL 176

Query: 225 FSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL 284
            S +      D+ + +  QM ++G  PN  TF  +L A +  S +  G Q+HA  +K+  
Sbjct: 177 LSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGF 236

Query: 285 DGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRK 344
           +    V  +L+ MY KS  + DA   FDS+  +D   +  +I  YA  G      + F +
Sbjct: 237 EFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHR 296

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404
           MRL G+K +     + L  CS    L   + LH   VK G+     + TAL+  Y+KC S
Sbjct: 297 MRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSS 356

Query: 405 IDDAEAVFK-GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           +D+A  +F    A  +  +W  MIGG+V++   +KA++ F  M  EG  P+  T+  VL+
Sbjct: 357 VDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLA 416

Query: 464 ACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNA 523
                 L    + H   IK  Y   P++     ++D   + G   E            + 
Sbjct: 417 GKPSSLL---SQLHAQIIKAYYEKVPSVA--TALLDAYVKTGNVVESARVFYSIP-AKDI 470

Query: 524 LVWENLLGACSWHGNIELDEKDAEKLLEL------EPKMESNYVFPSDISA 568
           + W  +L   +         +D+EK +E+      E    + Y F S I+A
Sbjct: 471 VAWSAMLTGLA-------QTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINA 514



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 113/447 (25%), Positives = 190/447 (42%), Gaps = 16/447 (3%)

Query: 160 RATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSV 219
           +A    G+ R   SIH +  K+       + +  +       R  Y  ++F+    +D  
Sbjct: 13  KAKITVGNGRLQSSIHHI--KHFLHPHGFLYHQSLPFISLPSRPRYAHQLFDETPLKDIS 70

Query: 220 SWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHT 279
            +N L   F       + L +F  +   G   +  T    LK C  L D   G+Q+H  +
Sbjct: 71  HYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQS 130

Query: 280 IKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMAL 339
           +K     +  VGTSLVDMY K+   ED    FD +  K++ ++T++++ YA+ G  +  +
Sbjct: 131 LKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVI 190

Query: 340 KCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMY 399
               +M++EG+  N FT A+ L   +  + +  G  +H++ VK G     FV  AL+ MY
Sbjct: 191 HLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMY 250

Query: 400 AKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFV 459
            K   + DAEAVF    +RD+ +WN+MIGGY   G   +  + F  M   G       F 
Sbjct: 251 LKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFC 310

Query: 460 VVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK 518
             L  CS    +   K+ H   +K  Y     I+    ++    +     E     +   
Sbjct: 311 TALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIR--TALMVTYSKCSSVDEAFKLFSMAD 368

Query: 519 LTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSG 578
              N + W  ++G    + N        +K ++L  +M    V P+  + +       S 
Sbjct: 369 AAHNVVTWTAMIGGFVQNNN-------NKKAVDLFCQMSREGVRPNHFTYSTVLAGKPSS 421

Query: 579 VRALLSSQGIK----KEPSCSWIEVDG 601
           + + L +Q IK    K PS +   +D 
Sbjct: 422 LLSQLHAQIIKAYYEKVPSVATALLDA 448



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 5/118 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A++VF    E ++VSWN+++ GY + GD +K + +F  M++        +   VL  
Sbjct: 557 IESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTA 616

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDK---FLSCSLVDMYSKCGLADNALKVFYRIKDP 115
             ++G ++ G+    + I+    +DK     SC +VD+YS+ G+ D A+ +   +  P
Sbjct: 617 CTHAGLVEEGEKYFNIMIK-DYHIDKKXEHYSC-MVDLYSRAGMFDKAMDIINGMPFP 672


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 198/599 (33%), Positives = 329/599 (54%), Gaps = 5/599 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F  M E   V+W  L+ GY++    ++   LF  M+    +    +  T+L G   
Sbjct: 102 ARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGC-- 159

Query: 64  SGYIKAGQV--VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           +G+    Q+  V    I+LG      +  +LVD Y K    D A ++F  + + D V++ 
Sbjct: 160 NGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYN 219

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           A+IT   + G  ++A  +F  M+ S +KP +F   +++ A     D   G+ IH+ + K 
Sbjct: 220 AMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKT 279

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
            F  +  V NAL+  Y ++  V    ++F+ +  QD VS+N + S +           +F
Sbjct: 280 NFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLF 339

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            ++    F      F  +L   S+  D   G+Q+HA TI  + D   +VG SLVDMY K 
Sbjct: 340 RELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKC 399

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G  E+A + F +L ++    +TA+I++Y Q G  E  L+ F KMR   + +++ T AS L
Sbjct: 400 GKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLL 459

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
              + +A+L+ G+ LHS  +K+G + ++F  +AL+ +YAKCGSI DA   F+    R+  
Sbjct: 460 RASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIV 519

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SWN MI  Y ++G  E  L++F+ M+  G  PD ++F+ VLSACSH GL+EEG  HF+S+
Sbjct: 520 SWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSM 579

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
            +IY + P  +H+A ++D+L R+G+F E E  + E  + P+ ++W ++L AC  H N EL
Sbjct: 580 TQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQEL 639

Query: 542 DEKDAEKLLELEP-KMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
             + A++L  +E  +  + YV  S+I A  G+W + S V   +  +G+KK P+ SW+E+
Sbjct: 640 ARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEI 698



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 130/462 (28%), Positives = 239/462 (51%), Gaps = 4/462 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++LA ++FK MPE++ VS+NA++ GY++ G  +K ++LF  M++   K ++F+ + VL  
Sbjct: 200 LDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCA 259

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 I  GQ +H+  I+     + F+S +L+D YSK     +A K+F  + + D V++
Sbjct: 260 NIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSY 319

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             II+     G  + A  +F  ++ ++    QF   +++   + T D   G  IHA    
Sbjct: 320 NVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIV 379

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              +S+ LVGN+LV MY + G+      +F  + H+ +V W A+ S +      ++GL++
Sbjct: 380 TTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQL 439

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M       +  TF  +L+A +S++ +  GKQLH+  IK     N   G++L+D+Y K
Sbjct: 440 FNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAK 499

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G ++DA   F  + ++++ ++ A+I++YAQ GEAE  LK F++M L G++ +  +    
Sbjct: 500 CGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGV 559

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVS--TALVAMYAKCGSIDDAEAVFKGSAL- 417
           L+ CS    +  G L H  ++   + LD       ++V M  + G  ++AE +     + 
Sbjct: 560 LSACSHSGLVEEG-LWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPID 618

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFV 459
            D   W+ ++     H   E A  A   + +   + D   +V
Sbjct: 619 PDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYV 660



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 131/502 (26%), Positives = 229/502 (45%), Gaps = 7/502 (1%)

Query: 52  FSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSL-VDMYSKCGLADNALKVFY 110
           F   T    F    ++K G++  A  +         +S ++ +  Y K G    A K+F 
Sbjct: 48  FDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFD 107

Query: 111 RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATT--ETGDQ 168
            + +   V W  +I    Q    +EA ++F  M+    +P+     +L+      E G+Q
Sbjct: 108 GMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQ 167

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228
                +   I K G++S  +VGN LV  Y ++ R+    ++F+ +   DSVS+NA+ + +
Sbjct: 168 IT--QVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGY 225

Query: 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH 288
                 ++ + +F +M   G KP   TF  +L A   L D+  G+Q+H+  IK +   N 
Sbjct: 226 SKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNV 285

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
            V  +L+D Y K   + DA   FD +  +D  +Y  II+ YA  G+ + A   FR+++  
Sbjct: 286 FVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFT 345

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
                +F  A+ L+  S       GR +H+  + T    ++ V  +LV MYAKCG  ++A
Sbjct: 346 AFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEA 405

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
           E +F     R    W  MI  YV+ G  E+ L+ F  M     + D+ TF  +L A + +
Sbjct: 406 EMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASI 465

Query: 469 GLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWEN 528
             +  GK+  S I K  G    +   + ++D+  + G   +      E     N + W  
Sbjct: 466 ASLSLGKQLHSFIIK-SGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMP-DRNIVSWNA 523

Query: 529 LLGACSWHGNIELDEKDAEKLL 550
           ++ A + +G  E   K  ++++
Sbjct: 524 MISAYAQNGEAEATLKSFKEMV 545



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/393 (27%), Positives = 178/393 (45%), Gaps = 37/393 (9%)

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS------------ 220
           +I A I K GF+ DT   N  V  +++NG +S   ++FE + H+++VS            
Sbjct: 38  NIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSG 97

Query: 221 -------------------WNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILK 261
                              W  L   +       +   +F QM   G +P+  TF+ +L 
Sbjct: 98  NLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLS 157

Query: 262 ACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFA 321
            C+         Q+    IK   D   +VG +LVD Y KS  L+ A   F  +   D  +
Sbjct: 158 GCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVS 217

Query: 322 YTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAV 381
           Y A+IT Y++ G  E A+  F +M+  G+K  EFT A+ L     +  +  G+ +HS  +
Sbjct: 218 YNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVI 277

Query: 382 KTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALE 441
           KT  + ++FVS AL+  Y+K  S+ DA  +F     +D  S+N++I GY   G  + A +
Sbjct: 278 KTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFD 337

Query: 442 AFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDI 500
            FR +    +   +  F  +LS  S+    E G++ H  +I  +      I     ++D+
Sbjct: 338 LFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTI--VTTADSEILVGNSLVDM 395

Query: 501 LGRAGKFTEIENFITETKLT-PNALVWENLLGA 532
             + GKF E E     T LT  +A+ W  ++ A
Sbjct: 396 YAKCGKFEEAEMIF--TNLTHRSAVPWTAMISA 426


>gi|414867973|tpg|DAA46530.1| TPA: hypothetical protein ZEAMMB73_503614 [Zea mays]
          Length = 923

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 201/598 (33%), Positives = 320/598 (53%), Gaps = 2/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R+F  M E + +SWNA+++ Y+      K   +   M+  E K    +L +++   A+
Sbjct: 199 AERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCAS 258

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           S  +  G  +H++ +  G      L  +LV+MYS  G  D A  +F  +   DV++W  +
Sbjct: 259 SDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLFRNMSRRDVISWNTM 318

Query: 124 ITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I+   Q   C EA +    L++     PN    +S + A +       G +IHA+I +  
Sbjct: 319 ISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACSSPEALMNGRTIHAMILQRS 378

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            ++  L+GN+L++MY +   +    RVFE++   D VS N L   +   E     +R+F 
Sbjct: 379 LQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLTGGYAALEDVANAMRVFS 438

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDV-GFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            M   G KPN  T I +   C SL D+  +G  LHA+  +  L  +  +  SL+ MY   
Sbjct: 439 WMRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTGLLSDEYITNSLITMYATC 498

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G LE +   F  + NK + ++ AII +  + G  E A+K F   +  G K + F LA CL
Sbjct: 499 GDLESSTGIFSRINNKSVISWNAIIAANVRHGRGEEAIKLFMDSQHAGNKLDRFCLAECL 558

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           +  + +A+L  G  LH ++VK G   D  V  A + MY KCG +D         A R T 
Sbjct: 559 SSSANLASLEEGMQLHGLSVKNGLDCDSHVVNATMDMYGKCGKMDCMLKTLPDPAHRPTQ 618

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
            WN +I GY ++G  ++A + F+ M+  G  PD +TFV +LSACSH GLI++G  +++S+
Sbjct: 619 CWNTLISGYARYGYFKEAEDTFKHMVSVGQKPDYVTFVALLSACSHAGLIDKGMDYYNSM 678

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
              +G++P IKH  C++D+LGR GKF E E FI E  + PN L+W +LL +   H N+++
Sbjct: 679 APTFGVSPGIKHCVCIVDLLGRLGKFAEAEKFIDEMPVLPNDLIWRSLLSSSRTHKNLDI 738

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
             K A+ LLEL+P  +S YV  S++ AT  RW D   +R+ + +  + K P+CSW+++
Sbjct: 739 GRKAAKNLLELDPFDDSAYVLLSNLYATNARWVDVDKLRSHMKTIKLNKRPACSWLKL 796



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 143/537 (26%), Positives = 250/537 (46%), Gaps = 6/537 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R+F  MP+ NVVSW A++   + +G  ++ +  +  M+      +  +L+TV+     
Sbjct: 98  AQRLFWEMPQRNVVSWTAIMVALSSNGCMEEALVAYRRMRKEGVMCNANALATVVSLCGA 157

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                AG  V A  +  G      ++ SL+ M+       +A ++F R+++ D ++W A+
Sbjct: 158 LEDEVAGLQVTAHVVVSGLLTHVSVANSLITMFGNLRRVQDAERLFDRMEERDRISWNAM 217

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+    +    +   + + MR   VKP+   L SLV     +     G  IH++    G 
Sbjct: 218 ISMYSHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGL 277

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
                + NALV+MY   G++     +F  ++ +D +SWN + S +    S  + L    Q
Sbjct: 278 HCSVPLINALVNMYSTAGKLDEAESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQ 337

Query: 244 MLLKGF-KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +L      PN  TF   L ACSS   +  G+ +HA  ++ SL    ++G SL+ MY K  
Sbjct: 338 LLQTDEGPPNSMTFSSALGACSSPEALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCN 397

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            +ED    F+S+   D+ +   +   YA   +   A++ F  MR  GIK N  T+ +   
Sbjct: 398 SMEDTERVFESMPCYDVVSCNVLTGGYAALEDVANAMRVFSWMRGTGIKPNYITMINLQG 457

Query: 363 GCSPVATLAN-GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
            C  +  L + G  LH+   +TG L D +++ +L+ MYA CG ++ +  +F     +   
Sbjct: 458 TCKSLGDLHSYGMPLHAYVTQTGLLSDEYITNSLITMYATCGDLESSTGIFSRINNKSVI 517

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSS 480
           SWN +I   V+HG GE+A++ F      G   D       LS+ +++  +EEG + H  S
Sbjct: 518 SWNAIIAANVRHGRGEEAIKLFMDSQHAGNKLDRFCLAECLSSSANLASLEEGMQLHGLS 577

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           +K   G+          +D+ G+ GK   +   + +    P    W  L+   + +G
Sbjct: 578 VKN--GLDCDSHVVNATMDMYGKCGKMDCMLKTLPDPAHRPTQ-CWNTLISGYARYG 631



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 136/541 (25%), Positives = 247/541 (45%), Gaps = 19/541 (3%)

Query: 11  MPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKA- 69
           MP     SW   ++G A  G       L   M++ +   S F+L++++    + G+ +  
Sbjct: 1   MPHRTSSSWYTAVSGCARCGLESTAFTLLRVMRERDVPLSGFALASLVTACEHRGWQEGA 60

Query: 70  --GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127
             G  +HA+  R G   + ++  +L+ +Y   GL  NA ++F+ +   +VV+W AI+  L
Sbjct: 61  ACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVAL 120

Query: 128 DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDT 187
              GC +EA   +  MR+  V  N   L ++V       D+  G  + A +   G  +  
Sbjct: 121 SSNGCMEEALVAYRRMRKEGVMCNANALATVVSLCGALEDEVAGLQVTAHVVVSGLLTHV 180

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK 247
            V N+L++M+    RV    R+F+ +  +D +SWNA+ S +   E   +   +   M   
Sbjct: 181 SVANSLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHG 240

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
             KP++ T   ++  C+S   V  G  +H+  +   L  +  +  +LV+MY  +G L++A
Sbjct: 241 EVKPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEA 300

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRK-MRLEGIKSNEFTLASCLNGCSP 366
              F +++ +D+ ++  +I+SY Q+     AL+   + ++ +    N  T +S L  CS 
Sbjct: 301 ESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACSS 360

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
              L NGR +H++ ++      + +  +L+ MY+KC S++D E VF+     D  S N++
Sbjct: 361 PEALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVL 420

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG-LIEEGKKHFSSIKKI- 484
            GGY        A+  F  M   G  P+ IT + +   C  +G L   G    + + +  
Sbjct: 421 TGGYAALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTG 480

Query: 485 -----YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
                Y     I  +A   D+    G F+ I N         + + W  ++ A   HG  
Sbjct: 481 LLSDEYITNSLITMYATCGDLESSTGIFSRINN--------KSVISWNAIIAANVRHGRG 532

Query: 540 E 540
           E
Sbjct: 533 E 533



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 176/375 (46%), Gaps = 2/375 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCS-MKDMEKKFSKFSLSTVLK 59
           ++ A+ +F++M   +V+SWN +++ Y +S    + +      ++  E   +  + S+ L 
Sbjct: 297 LDEAESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALG 356

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             ++   +  G+ +HAM ++        +  SL+ MYSKC   ++  +VF  +   DVV+
Sbjct: 357 ACSSPEALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVS 416

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD-QRCGESIHAVI 178
              +            A ++F+ MR + +KPN   + +L       GD    G  +HA +
Sbjct: 417 CNVLTGGYAALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYV 476

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            + G  SD  + N+L++MY   G +   + +F  I ++  +SWNA+ +    +   ++ +
Sbjct: 477 TQTGLLSDEYITNSLITMYATCGDLESSTGIFSRINNKSVISWNAIIAANVRHGRGEEAI 536

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           ++F      G K +       L + ++L+ +  G QLH  ++K+ LD +  V  + +DMY
Sbjct: 537 KLFMDSQHAGNKLDRFCLAECLSSSANLASLEEGMQLHGLSVKNGLDCDSHVVNATMDMY 596

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G ++         A++    +  +I+ YA+ G  + A   F+ M   G K +  T  
Sbjct: 597 GKCGKMDCMLKTLPDPAHRPTQCWNTLISGYARYGYFKEAEDTFKHMVSVGQKPDYVTFV 656

Query: 359 SCLNGCSPVATLANG 373
           + L+ CS    +  G
Sbjct: 657 ALLSACSHAGLIDKG 671


>gi|356567222|ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Glycine max]
          Length = 887

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 202/599 (33%), Positives = 316/599 (52%), Gaps = 3/599 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++LA ++F  M   + +SW  ++ GY   G   +V+ L   MK    K +K S+   +  
Sbjct: 278 VKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMNKISVVNSVLA 337

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              +  ++ G+ VH  A++LG   D  ++  +V MY+KCG    A + F  ++  D+V W
Sbjct: 338 ATETRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGELKKAKEFFLSLEGRDLVVW 397

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A ++ L Q G   EA  IF  M+   +KP++ +L+SLV A  E    R G+ +H  + K
Sbjct: 398 SAFLSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACAEISSSRLGKMMHCYVIK 457

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
               SD  V   LVSMY       Y   +F  + ++D V+WN L + F     P   L +
Sbjct: 458 ADMGSDISVATTLVSMYTRCKSFMYAMTLFNRMHYKDVVAWNTLINGFTKCGDPRLALEM 517

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F ++ L G +P+  T + +L AC+ L D+  G   H + IK+ ++    V  +L+DMY K
Sbjct: 518 FLRLQLSGVQPDSGTMVSLLSACALLDDLYLGICFHGNIIKNGIESEMHVKVALIDMYAK 577

Query: 301 SGCLEDAGVAFDSLAN-KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
            G L  A   F    + KD  ++  +I  Y   G A  A+  F +M+LE ++ N  T  +
Sbjct: 578 CGSLCTAENLFHLNKHVKDEVSWNVMIAGYLHNGCANEAISTFNQMKLESVRPNLVTFVT 637

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L   S ++ L      H+  ++ G +    +  +L+ MYAK G +  +E  F     + 
Sbjct: 638 ILPAVSYLSILREAMAFHACIIRMGFISSTLIGNSLIDMYAKSGQLSYSEKCFHEMENKG 697

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP-DEITFVVVLSACSHMGLIEEGKKHF 478
           T SWN M+ GY  HG GE AL  F +M  E +VP D ++++ VLSAC H GLI+EG+  F
Sbjct: 698 TISWNAMLSGYAMHGQGEVALALFSLM-QETHVPVDSVSYISVLSACRHAGLIQEGRNIF 756

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            S+ + + + P+++H+ACM+D+LG AG F E+   I +    P+A VW  LLGAC  H N
Sbjct: 757 QSMTEKHNLEPSMEHYACMVDLLGCAGLFDEVLCLIDKMPTEPDAQVWGALLGACKMHSN 816

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           ++L E     LL+LEP+   +Y+  SDI A  GRW D    R+ ++  G+KK P  SW+
Sbjct: 817 VKLGEIALHHLLKLEPRNAVHYIVLSDIYAQCGRWIDARRTRSNMTDHGLKKNPGYSWV 875



 Score =  258 bits (658), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 157/541 (29%), Positives = 277/541 (51%), Gaps = 8/541 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF  MP  +V SWNA+++G ++S +  + + +F  M+ ME+     S+S +    A 
Sbjct: 181 ARKVFDKMPGKDVASWNAMISGLSQSSNPCEALEIFQRMQ-MEEGVEPDSVSILNLAPAV 239

Query: 64  SGY--IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           S    + + + +H   +R  C     +S SL+DMYSKCG    A ++F ++   D ++W 
Sbjct: 240 SRLEDVDSCKSIHGYVVR-RCVFG-VVSNSLIDMYSKCGEVKLAHQIFDQMWVKDDISWA 297

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            ++      GC  E  ++ + M+   +K N+  + + V A TET D   G+ +H    + 
Sbjct: 298 TMMAGYVHHGCYFEVLQLLDEMKRKHIKMNKISVVNSVLAATETRDLEKGKEVHNYALQL 357

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G  SD +V   +VSMY + G +      F ++  +D V W+A  S       P + L IF
Sbjct: 358 GMTSDIVVATPIVSMYAKCGELKKAKEFFLSLEGRDLVVWSAFLSALVQAGYPGEALSIF 417

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M  +G KP+      ++ AC+ +S    GK +H + IK  +  +  V T+LV MY + 
Sbjct: 418 QEMQHEGLKPDKTILSSLVSACAEISSSRLGKMMHCYVIKADMGSDISVATTLVSMYTRC 477

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
                A   F+ +  KD+ A+  +I  + + G+  +AL+ F +++L G++ +  T+ S L
Sbjct: 478 KSFMYAMTLFNRMHYKDVVAWNTLINGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLL 537

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK-GSALRDT 420
           + C+ +  L  G   H   +K G   +M V  AL+ MYAKCGS+  AE +F     ++D 
Sbjct: 538 SACALLDDLYLGICFHGNIIKNGIESEMHVKVALIDMYAKCGSLCTAENLFHLNKHVKDE 597

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SWN+MI GY+ +G   +A+  F  M  E   P+ +TFV +L A S++ ++ E     + 
Sbjct: 598 VSWNVMIAGYLHNGCANEAISTFNQMKLESVRPNLVTFVTILPAVSYLSILREAMAFHAC 657

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           I ++  I+ T+   + +ID+  ++G+ +  E    E +     + W  +L   + HG  E
Sbjct: 658 IIRMGFISSTLIGNS-LIDMYAKSGQLSYSEKCFHEME-NKGTISWNAMLSGYAMHGQGE 715

Query: 541 L 541
           +
Sbjct: 716 V 716



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 153/553 (27%), Positives = 269/553 (48%), Gaps = 12/553 (2%)

Query: 10  SMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKA 69
           S+   +++ WN+L+  Y+     Q+ +  + +M  M  +  K++ + VLK    +     
Sbjct: 86  SITNPSLILWNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKACTGALDFHE 145

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
           G  +H          D F+   LVDMY K G  DNA KVF ++   DV +W A+I+ L Q
Sbjct: 146 GVAIHQDIASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGKDVASWNAMISGLSQ 205

Query: 130 QGCCQEAAKIFNLMR-ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI---CKYGFES 185
                EA +IF  M+ E  V+P+   + +L  A +   D    +SIH  +   C +G   
Sbjct: 206 SSNPCEALEIFQRMQMEEGVEPDSVSILNLAPAVSRLEDVDSCKSIHGYVVRRCVFG--- 262

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
             +V N+L+ MY + G V    ++F+ +  +D +SW  + + +  +    + L++  +M 
Sbjct: 263 --VVSNSLIDMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMK 320

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
            K  K N  + +  + A +   D+  GK++H + ++  +  + VV T +V MY K G L+
Sbjct: 321 RKHIKMNKISVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGELK 380

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
            A   F SL  +DL  ++A +++  QAG    AL  F++M+ EG+K ++  L+S ++ C+
Sbjct: 381 KAKEFFLSLEGRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACA 440

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
            +++   G+++H   +K     D+ V+T LV+MY +C S   A  +F     +D  +WN 
Sbjct: 441 EISSSRLGKMMHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTLFNRMHYKDVVAWNT 500

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIY 485
           +I G+ K G    ALE F  +   G  PD  T V +LSAC+ +  +  G     +I K  
Sbjct: 501 LINGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDDLYLGICFHGNIIK-N 559

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG--NIELDE 543
           GI   +     +ID+  + G     EN     K   + + W  ++     +G  N  +  
Sbjct: 560 GIESEMHVKVALIDMYAKCGSLCTAENLFHLNKHVKDEVSWNVMIAGYLHNGCANEAIST 619

Query: 544 KDAEKLLELEPKM 556
            +  KL  + P +
Sbjct: 620 FNQMKLESVRPNL 632



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 109/379 (28%), Positives = 189/379 (49%), Gaps = 9/379 (2%)

Query: 98  KCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTS 157
           +C LA N+      I +P ++ W ++I    +    QEA K +  M    ++P+++  T 
Sbjct: 79  QCTLAPNS------ITNPSLILWNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTF 132

Query: 158 LVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQD 217
           +++A T   D   G +IH  I     E D  +G  LV MY + G +    +VF+ +  +D
Sbjct: 133 VLKACTGALDFHEGVAIHQDIASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGKD 192

Query: 218 SVSWNALFSRFQDYESPDQGLRIFYQMLL-KGFKPNMCTFIVILKACSSLSDVGFGKQLH 276
             SWNA+ S      +P + L IF +M + +G +P+  + + +  A S L DV   K +H
Sbjct: 193 VASWNAMISGLSQSSNPCEALEIFQRMQMEEGVEPDSVSILNLAPAVSRLEDVDSCKSIH 252

Query: 277 AHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAE 336
            + ++  + G  VV  SL+DMY K G ++ A   FD +  KD  ++  ++  Y   G   
Sbjct: 253 GYVVRRCVFG--VVSNSLIDMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYF 310

Query: 337 MALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALV 396
             L+   +M+ + IK N+ ++ + +   +    L  G+ +H+ A++ G   D+ V+T +V
Sbjct: 311 EVLQLLDEMKRKHIKMNKISVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATPIV 370

Query: 397 AMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI 456
           +MYAKCG +  A+  F     RD   W+  +   V+ G   +AL  F+ M  EG  PD+ 
Sbjct: 371 SMYAKCGELKKAKEFFLSLEGRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKPDKT 430

Query: 457 TFVVVLSACSHMGLIEEGK 475
               ++SAC+ +     GK
Sbjct: 431 ILSSLVSACAEISSSRLGK 449



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 128/272 (47%), Gaps = 9/272 (3%)

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++   +A +S+ N  L  + ++I +Y++    + A+K ++ M   G++ +++T    L  
Sbjct: 77  VQQCTLAPNSITNPSLILWNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKA 136

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+       G  +H          D+F+ T LV MY K G +D+A  VF     +D ASW
Sbjct: 137 CTGALDFHEGVAIHQDIASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGKDVASW 196

Query: 424 NMMIGGYVKHGLGEKALEAF-RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSI 481
           N MI G  +     +ALE F RM ++EG  PD ++ + +  A S +  ++  K  H   +
Sbjct: 197 NAMISGLSQSSNPCEALEIFQRMQMEEGVEPDSVSILNLAPAVSRLEDVDSCKSIHGYVV 256

Query: 482 KK-IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           ++ ++G+         +ID+  + G+  ++ + I +     + + W  ++     HG   
Sbjct: 257 RRCVFGVVSN-----SLIDMYSKCGE-VKLAHQIFDQMWVKDDISWATMMAGYVHHGCYF 310

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGR 572
              +  +++     KM    V  S ++AT+ R
Sbjct: 311 EVLQLLDEMKRKHIKMNKISVVNSVLAATETR 342


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  364 bits (934), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 181/499 (36%), Positives = 293/499 (58%)

Query: 103 DNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRAT 162
           D A+ +F +I +PD  A+  +I     +    EA  +F  M E+SV+P++F    +++  
Sbjct: 75  DYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVC 134

Query: 163 TETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWN 222
           +       GE IHA+I K GF S   V N L+ MY   G V    RVF+ ++ ++  +WN
Sbjct: 135 SRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWN 194

Query: 223 ALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKH 282
           ++F+ +    + ++ +++F++ML    + +  T + +L AC  L+D+  G+ ++ +  + 
Sbjct: 195 SMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEK 254

Query: 283 SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCF 342
            L GN  + TSLVDMY K G ++ A   FD +  +D+ A++A+I+ Y+QA     AL  F
Sbjct: 255 GLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLF 314

Query: 343 RKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC 402
            +M+   I  NE T+ S L+ C+ +  L  G+ +H    K    L + + TAL+  YAKC
Sbjct: 315 HEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKC 374

Query: 403 GSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVL 462
           GS++ +  VF    +++  SW ++I G   +G G+KALE F +ML++   P+++TF+ VL
Sbjct: 375 GSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVL 434

Query: 463 SACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPN 522
           SACSH GL++EG+  F S+ + +GI P I+H+ CM+DILGRAG   E   FI    + PN
Sbjct: 435 SACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPN 494

Query: 523 ALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRAL 582
           A++W  LL +C  H N+E+ E+  ++L+ LEP    +Y+  S+I A+ GRW D   VR  
Sbjct: 495 AVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGE 554

Query: 583 LSSQGIKKEPSCSWIEVDG 601
           +  +GIKK P CS IE+DG
Sbjct: 555 MKEKGIKKTPGCSLIELDG 573



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 107/451 (23%), Positives = 217/451 (48%), Gaps = 5/451 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A  +F+ + E +  ++N ++ G+       + + LF  M +   +  +F+   +LK 
Sbjct: 74  MDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKV 133

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    +  G+ +HA+ ++ G     F+  +L+ MY+ CG  + A +VF  + + +V  W
Sbjct: 134 CSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTW 193

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++     + G  +E  K+F+ M E  ++ ++  L S++ A     D   GE I+  + +
Sbjct: 194 NSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEE 253

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G + +  +  +LV MY + G+V    R+F+ +  +D V+W+A+ S +       + L +
Sbjct: 254 KGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDL 313

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F++M      PN  T + IL +C+ L  +  GK +H    K  +     +GT+L+D Y K
Sbjct: 314 FHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAK 373

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +E +   F  +  K++ ++T +I   A  G+ + AL+ F  M  + ++ N+ T    
Sbjct: 374 CGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGV 433

Query: 361 LNGCSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
           L+ CS    +  GR L  S++   G    +     +V +  + G I++A    K   ++ 
Sbjct: 434 LSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQP 493

Query: 420 TAS-WNMMIGGYVKHG---LGEKALEAFRMM 446
            A  W  ++     H    +GE++L+   ++
Sbjct: 494 NAVIWRTLLASCKVHKNVEIGEESLKQLIIL 524



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 115/392 (29%), Positives = 185/392 (47%), Gaps = 23/392 (5%)

Query: 203 VSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKA 262
           + Y   +F  I   DS ++N +   F   +SP + + +F +M     +P+  TF  ILK 
Sbjct: 74  MDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKV 133

Query: 263 CSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAY 322
           CS L  +  G+Q+HA  +K     +  V  +L+ MY   G +E A   FD ++ +++  +
Sbjct: 134 CSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTW 193

Query: 323 TAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVK 382
            ++   Y ++G  E  +K F +M    I+ +E TL S L  C  +A L  G  ++    +
Sbjct: 194 NSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEE 253

Query: 383 TGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEA 442
            G   +  + T+LV MYAKCG +D A  +F     RD  +W+ MI GY +     +AL+ 
Sbjct: 254 KGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDL 313

Query: 443 FRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK-KHFSSIKKIYGITPTIKHFACMIDIL 501
           F  M      P+EIT V +LS+C+ +G +E GK  HF   KK   +T T+     ++D  
Sbjct: 314 FHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLG--TALMDFY 371

Query: 502 GRAGKFTEIENFITETKLTP--NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESN 559
            + G    +E+ I      P  N L W  L+   + +G         +K LE    M   
Sbjct: 372 AKCGS---VESSIEVFGKMPVKNVLSWTVLIQGLASNGQ-------GKKALEYFYLMLEK 421

Query: 560 YVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
            V P+D++        F GV +  S  G+  E
Sbjct: 422 NVEPNDVT--------FIGVLSACSHAGLVDE 445



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 103/231 (44%), Gaps = 11/231 (4%)

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALV--AMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           T+ +   +H+  +KT  LL   V+  L+  A      S+D A ++F+     D+ ++N+M
Sbjct: 36  TIRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQIDEPDSPAYNIM 95

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI-Y 485
           I G+       +A+  F+ M +    PDE TF  +L  CS +  + EG++  + I K  +
Sbjct: 96  IRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGF 155

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKD 545
           G    +K+   +I +    G+  E+   + +     N   W ++    +  GN E   K 
Sbjct: 156 GSHGFVKN--TLIHMYANCGE-VEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKL 212

Query: 546 AEKLLELEPKMESNYVFPSDISATQGRWNDF---SGVRALLSSQGIKKEPS 593
             ++LEL+ + +   V    +    GR  D      +   +  +G+K  P+
Sbjct: 213 FHEMLELDIRFDE--VTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPT 261


>gi|414867972|tpg|DAA46529.1| TPA: hypothetical protein ZEAMMB73_503614 [Zea mays]
          Length = 993

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 201/598 (33%), Positives = 320/598 (53%), Gaps = 2/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R+F  M E + +SWNA+++ Y+      K   +   M+  E K    +L +++   A+
Sbjct: 199 AERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCAS 258

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           S  +  G  +H++ +  G      L  +LV+MYS  G  D A  +F  +   DV++W  +
Sbjct: 259 SDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLFRNMSRRDVISWNTM 318

Query: 124 ITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I+   Q   C EA +    L++     PN    +S + A +       G +IHA+I +  
Sbjct: 319 ISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACSSPEALMNGRTIHAMILQRS 378

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            ++  L+GN+L++MY +   +    RVFE++   D VS N L   +   E     +R+F 
Sbjct: 379 LQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLTGGYAALEDVANAMRVFS 438

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDV-GFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            M   G KPN  T I +   C SL D+  +G  LHA+  +  L  +  +  SL+ MY   
Sbjct: 439 WMRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTGLLSDEYITNSLITMYATC 498

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G LE +   F  + NK + ++ AII +  + G  E A+K F   +  G K + F LA CL
Sbjct: 499 GDLESSTGIFSRINNKSVISWNAIIAANVRHGRGEEAIKLFMDSQHAGNKLDRFCLAECL 558

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           +  + +A+L  G  LH ++VK G   D  V  A + MY KCG +D         A R T 
Sbjct: 559 SSSANLASLEEGMQLHGLSVKNGLDCDSHVVNATMDMYGKCGKMDCMLKTLPDPAHRPTQ 618

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
            WN +I GY ++G  ++A + F+ M+  G  PD +TFV +LSACSH GLI++G  +++S+
Sbjct: 619 CWNTLISGYARYGYFKEAEDTFKHMVSVGQKPDYVTFVALLSACSHAGLIDKGMDYYNSM 678

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
              +G++P IKH  C++D+LGR GKF E E FI E  + PN L+W +LL +   H N+++
Sbjct: 679 APTFGVSPGIKHCVCIVDLLGRLGKFAEAEKFIDEMPVLPNDLIWRSLLSSSRTHKNLDI 738

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
             K A+ LLEL+P  +S YV  S++ AT  RW D   +R+ + +  + K P+CSW+++
Sbjct: 739 GRKAAKNLLELDPFDDSAYVLLSNLYATNARWVDVDKLRSHMKTIKLNKRPACSWLKL 796



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 143/537 (26%), Positives = 250/537 (46%), Gaps = 6/537 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R+F  MP+ NVVSW A++   + +G  ++ +  +  M+      +  +L+TV+     
Sbjct: 98  AQRLFWEMPQRNVVSWTAIMVALSSNGCMEEALVAYRRMRKEGVMCNANALATVVSLCGA 157

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                AG  V A  +  G      ++ SL+ M+       +A ++F R+++ D ++W A+
Sbjct: 158 LEDEVAGLQVTAHVVVSGLLTHVSVANSLITMFGNLRRVQDAERLFDRMEERDRISWNAM 217

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+    +    +   + + MR   VKP+   L SLV     +     G  IH++    G 
Sbjct: 218 ISMYSHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGL 277

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
                + NALV+MY   G++     +F  ++ +D +SWN + S +    S  + L    Q
Sbjct: 278 HCSVPLINALVNMYSTAGKLDEAESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQ 337

Query: 244 MLLKG-FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +L      PN  TF   L ACSS   +  G+ +HA  ++ SL    ++G SL+ MY K  
Sbjct: 338 LLQTDEGPPNSMTFSSALGACSSPEALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCN 397

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            +ED    F+S+   D+ +   +   YA   +   A++ F  MR  GIK N  T+ +   
Sbjct: 398 SMEDTERVFESMPCYDVVSCNVLTGGYAALEDVANAMRVFSWMRGTGIKPNYITMINLQG 457

Query: 363 GCSPVATLAN-GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
            C  +  L + G  LH+   +TG L D +++ +L+ MYA CG ++ +  +F     +   
Sbjct: 458 TCKSLGDLHSYGMPLHAYVTQTGLLSDEYITNSLITMYATCGDLESSTGIFSRINNKSVI 517

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSS 480
           SWN +I   V+HG GE+A++ F      G   D       LS+ +++  +EEG + H  S
Sbjct: 518 SWNAIIAANVRHGRGEEAIKLFMDSQHAGNKLDRFCLAECLSSSANLASLEEGMQLHGLS 577

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           +K   G+          +D+ G+ GK   +   + +    P    W  L+   + +G
Sbjct: 578 VKN--GLDCDSHVVNATMDMYGKCGKMDCMLKTLPDPAHRPTQ-CWNTLISGYARYG 631



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 136/541 (25%), Positives = 247/541 (45%), Gaps = 19/541 (3%)

Query: 11  MPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKA- 69
           MP     SW   ++G A  G       L   M++ +   S F+L++++    + G+ +  
Sbjct: 1   MPHRTSSSWYTAVSGCARCGLESTAFTLLRVMRERDVPLSGFALASLVTACEHRGWQEGA 60

Query: 70  --GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127
             G  +HA+  R G   + ++  +L+ +Y   GL  NA ++F+ +   +VV+W AI+  L
Sbjct: 61  ACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVAL 120

Query: 128 DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDT 187
              GC +EA   +  MR+  V  N   L ++V       D+  G  + A +   G  +  
Sbjct: 121 SSNGCMEEALVAYRRMRKEGVMCNANALATVVSLCGALEDEVAGLQVTAHVVVSGLLTHV 180

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK 247
            V N+L++M+    RV    R+F+ +  +D +SWNA+ S +   E   +   +   M   
Sbjct: 181 SVANSLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHG 240

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
             KP++ T   ++  C+S   V  G  +H+  +   L  +  +  +LV+MY  +G L++A
Sbjct: 241 EVKPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEA 300

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRK-MRLEGIKSNEFTLASCLNGCSP 366
              F +++ +D+ ++  +I+SY Q+     AL+   + ++ +    N  T +S L  CS 
Sbjct: 301 ESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACSS 360

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
              L NGR +H++ ++      + +  +L+ MY+KC S++D E VF+     D  S N++
Sbjct: 361 PEALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVL 420

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG-LIEEGKKHFSSIKKI- 484
            GGY        A+  F  M   G  P+ IT + +   C  +G L   G    + + +  
Sbjct: 421 TGGYAALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTG 480

Query: 485 -----YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
                Y     I  +A   D+    G F+ I N         + + W  ++ A   HG  
Sbjct: 481 LLSDEYITNSLITMYATCGDLESSTGIFSRINN--------KSVISWNAIIAANVRHGRG 532

Query: 540 E 540
           E
Sbjct: 533 E 533



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 176/375 (46%), Gaps = 2/375 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCS-MKDMEKKFSKFSLSTVLK 59
           ++ A+ +F++M   +V+SWN +++ Y +S    + +      ++  E   +  + S+ L 
Sbjct: 297 LDEAESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALG 356

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             ++   +  G+ +HAM ++        +  SL+ MYSKC   ++  +VF  +   DVV+
Sbjct: 357 ACSSPEALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVS 416

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD-QRCGESIHAVI 178
              +            A ++F+ MR + +KPN   + +L       GD    G  +HA +
Sbjct: 417 CNVLTGGYAALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYV 476

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            + G  SD  + N+L++MY   G +   + +F  I ++  +SWNA+ +    +   ++ +
Sbjct: 477 TQTGLLSDEYITNSLITMYATCGDLESSTGIFSRINNKSVISWNAIIAANVRHGRGEEAI 536

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           ++F      G K +       L + ++L+ +  G QLH  ++K+ LD +  V  + +DMY
Sbjct: 537 KLFMDSQHAGNKLDRFCLAECLSSSANLASLEEGMQLHGLSVKNGLDCDSHVVNATMDMY 596

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G ++         A++    +  +I+ YA+ G  + A   F+ M   G K +  T  
Sbjct: 597 GKCGKMDCMLKTLPDPAHRPTQCWNTLISGYARYGYFKEAEDTFKHMVSVGQKPDYVTFV 656

Query: 359 SCLNGCSPVATLANG 373
           + L+ CS    +  G
Sbjct: 657 ALLSACSHAGLIDKG 671


>gi|147780613|emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera]
          Length = 654

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 211/598 (35%), Positives = 310/598 (51%), Gaps = 51/598 (8%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDG--QKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           AK VF+ +   +VVSWN ++NGY++ G      VM LF  M+      +  + + V    
Sbjct: 59  AKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAA 118

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           +       G++ HA+AI++    D F+  SL++MY K GL   A KVF  + + + V+W 
Sbjct: 119 STLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWA 178

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            +I+    Q    EA  +F LMR      N+FV TS++ A T       G+ IH +  K 
Sbjct: 179 TMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKN 238

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G  S   VGNALV+MY + G +    + FE  + ++S++W+A+ +        D+ L++F
Sbjct: 239 GLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGXAQSGDSDKALKLF 298

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
             M L G +P+  TF+ ++ ACS L     GKQ+H + +K   +    V T+LVDMY K 
Sbjct: 299 SSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKC 358

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
             + DA   FD L   D+  +T++I  Y Q GE E AL  + +M +EGI  NE T+AS L
Sbjct: 359 SSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVL 418

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
             CS +A L  G+ +H+  VK G  L++ + +AL  MYAKCG + D   VF+    RD  
Sbjct: 419 KACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVI 478

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SWN MI G  ++G G++ALE F  M  EG  PD +TFV +LSACSHMGL+E G  +F  +
Sbjct: 479 SWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMM 538

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
              +G+ P ++H+ACM+DIL RAGK  E   F TE+    + + WE              
Sbjct: 539 FDEFGMDPRVEHYACMVDILSRAGKLKEAIEF-TESATIDHGM-WE-------------- 582

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
                                            D   VR ++  +G+ KEP CSWIE+
Sbjct: 583 ---------------------------------DVERVRRMMKLRGVSKEPGCSWIEL 607



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 97/207 (46%), Gaps = 16/207 (7%)

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
           +L  G+ LH+  +K+     ++++ +LV +YAKC  + +A+ VF+    +D  SWN +I 
Sbjct: 21  SLQKGKALHAQIIKSSSSC-VYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIIN 79

Query: 429 GYVKHGL--GEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK-KHFSSIK--- 482
           GY +HG       +E F+ M  E   P+  TF  V +A S +     G+  H  +IK   
Sbjct: 80  GYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDS 139

Query: 483 -KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
            +   +  ++ +  C   +   A K       + +T    N++ W  ++   +    +  
Sbjct: 140 CRDVFVGSSLMNMYCKAGLTPEARK-------VFDTMPERNSVSWATMISGYASQ-KLAA 191

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISA 568
           +     +L+  E + E+ +VF S +SA
Sbjct: 192 EALGLFRLMRREEEGENEFVFTSVLSA 218


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 192/595 (32%), Positives = 317/595 (53%), Gaps = 2/595 (0%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           VF  M + N+ SWN L+ GYA++G   + + L+  M  +  K   ++   VL+       
Sbjct: 163 VFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPN 222

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +  G+ +H   IR G   D  +  +L+ MY KCG  + A  VF ++ + D ++W A+I+ 
Sbjct: 223 LVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISG 282

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             + G C E  ++F +M +  V P+   +TS++ A    GD R G  IH  + +  F  D
Sbjct: 283 YFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRD 342

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             + N+L+ MY   G +     VF     +D VSW A+ S +++   P + L  +  M  
Sbjct: 343 PSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMMEA 402

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           +G  P+  T  ++L ACS L ++  G  LH    +  L    +V  SL+DMY K  C++ 
Sbjct: 403 EGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDK 462

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A   F S   K++ ++T+II           AL  FR+M +  +K N  TL   L+ C+ 
Sbjct: 463 ALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREM-IRRLKPNSVTLVCVLSACAR 521

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           +  L  G+ +H+ A++TG   D F+  A++ MY +CG ++ A   F  S   +  SWN++
Sbjct: 522 IGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQF-FSVDHEVTSWNIL 580

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           + GY + G G  A E F+ M++    P+E+TF+ +L ACS  G++ EG ++F+S+K  Y 
Sbjct: 581 LTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCACSRSGMVAEGLEYFNSMKYKYS 640

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDA 546
           I P +KH+AC++D+LGR+GK  E   FI +  + P+  VW  LL +C  H ++EL E  A
Sbjct: 641 IMPNLKHYACVVDLLGRSGKLEEAYEFIQKMPMKPDPAVWGALLNSCRIHHHVELGELAA 700

Query: 547 EKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           E + + +      Y+  S++ A  G+W+  + VR ++   G+  +P CSW+EV G
Sbjct: 701 ENIFQDDTTSVGYYILLSNLYADNGKWDKVAEVRKMMRQNGLIVDPGCSWVEVKG 755



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 136/484 (28%), Positives = 239/484 (49%), Gaps = 33/484 (6%)

Query: 88  LSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESS 147
           L  +L+ M+ + G   +A  VF R++  ++ +W  ++    + G   EA  +++ M    
Sbjct: 143 LGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVG 202

Query: 148 VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGS 207
           VKP+ +    ++R      +   G  IH  + +YGFESD  V NAL++MY++ G V+   
Sbjct: 203 VKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTAR 262

Query: 208 RVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLS 267
            VF+ + ++D +SWNA+ S + +     +GLR+F  M+     P++ T   ++ AC  L 
Sbjct: 263 LVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLG 322

Query: 268 DVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIIT 327
           D   G+Q+H + ++     +  +  SL+ MY   G +E+A   F     +DL ++TA+I+
Sbjct: 323 DDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMIS 382

Query: 328 SYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL 387
            Y      + AL+ ++ M  EGI  +E T+A  L+ CS +  L  G  LH +A + G + 
Sbjct: 383 GYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVS 442

Query: 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML 447
              V+ +L+ MYAKC  ID A  +F  +  ++  SW  +I G   +    +AL  FR M+
Sbjct: 443 YSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMI 502

Query: 448 DEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK---KIYGITP-------------- 489
                P+ +T V VLSAC+ +G +  GK+ H  +++      G  P              
Sbjct: 503 RR-LKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRME 561

Query: 490 -------TIKHFACMIDIL-------GRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
                  ++ H     +IL       G+    TE+   + E+ ++PN + + ++L ACS 
Sbjct: 562 YAWKQFFSVDHEVTSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCACSR 621

Query: 536 HGNI 539
            G +
Sbjct: 622 SGMV 625



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/443 (25%), Positives = 218/443 (49%), Gaps = 7/443 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF  MP  + +SWNA+++GY E+G   + + LF  M          ++++V+     
Sbjct: 261 ARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACEL 320

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G  + G+ +H   +R     D  +  SL+ MYS  GL + A  VF R +  D+V+W A+
Sbjct: 321 LGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAM 380

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+  +     Q+A + + +M    + P++  +  ++ A +   +   G ++H V  + G 
Sbjct: 381 ISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGL 440

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            S ++V N+L+ MY +   +     +F +   ++ VSW ++    +      + L  F++
Sbjct: 441 VSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEAL-FFFR 499

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
            +++  KPN  T + +L AC+ +  +  GK++HAH ++  +  +  +  +++DMY + G 
Sbjct: 500 EMIRRLKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGR 559

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +E A   F S+ + ++ ++  ++T YA+ G+   A + F++M    +  NE T  S L  
Sbjct: 560 MEYAWKQFFSV-DHEVTSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCA 618

Query: 364 CSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA-EAVFKGSALRDTA 421
           CS    +A G    +S+  K   + ++     +V +  + G +++A E + K     D A
Sbjct: 619 CSRSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMPMKPDPA 678

Query: 422 SWNMMIGGYVKHG---LGEKALE 441
            W  ++     H    LGE A E
Sbjct: 679 VWGALLNSCRIHHHVELGELAAE 701



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 151/308 (49%), Gaps = 3/308 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ VF      ++VSW A+++GY      QK +  +  M+       + +++ VL  
Sbjct: 359 IEEAETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSA 418

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    +  G  +H +A + G      ++ SL+DMY+KC   D AL++F+   + ++V+W
Sbjct: 419 CSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSW 478

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +II  L     C EA   F  M    +KPN   L  ++ A    G   CG+ IHA   +
Sbjct: 479 TSIILGLRINNRCFEALFFFREMIR-RLKPNSVTLVCVLSACARIGALTCGKEIHAHALR 537

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G   D  + NA++ MY+  GR+ Y  + F ++ H+ + SWN L + + +         +
Sbjct: 538 TGVSFDGFMPNAILDMYVRCGRMEYAWKQFFSVDHEVT-SWNILLTGYAERGKGAHATEL 596

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFG-KQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           F +M+     PN  TFI IL ACS    V  G +  ++   K+S+  N      +VD+  
Sbjct: 597 FQRMVESNVSPNEVTFISILCACSRSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLG 656

Query: 300 KSGCLEDA 307
           +SG LE+A
Sbjct: 657 RSGKLEEA 664



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 4/133 (3%)

Query: 374 RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKH 433
           R+   +++   HL  + +  AL++M+ + G++ DA  VF     R+  SWN+++GGY K 
Sbjct: 127 RVYSYVSISMSHL-SLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKA 185

Query: 434 GLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIK 492
           GL ++AL+ +  ML  G  PD  TF  VL  C  M  +  G++ H   I+  YG    + 
Sbjct: 186 GLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIR--YGFESDVD 243

Query: 493 HFACMIDILGRAG 505
               +I +  + G
Sbjct: 244 VVNALITMYVKCG 256


>gi|357128207|ref|XP_003565766.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Brachypodium distachyon]
          Length = 734

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 205/598 (34%), Positives = 324/598 (54%), Gaps = 4/598 (0%)

Query: 7   VFKSMPEL--NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANS 64
           VF  +P    +V SWN+LLN  +       + H    +       S  S +      A +
Sbjct: 71  VFADIPAAARDVASWNSLLNPLSHHRPLAALSHFRSMLSSSTILPSPHSFAAAFTAAARA 130

Query: 65  GYIKAGQVVHAMAIRLGCALDK-FLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
               AG VVHA+A +L  A    F+S +L++MY K GL  +A  VF  +   + V+W A+
Sbjct: 131 HSASAGAVVHALACKLPSASSNVFVSTALLNMYCKLGLIPDAQLVFDEMPHRNEVSWAAM 190

Query: 124 ITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +     + C QEA ++F  ++ E  +  N+FV T+++ A +       G  +H ++ K G
Sbjct: 191 VAGYAARKCSQEAFELFRQMLGECPLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVKDG 250

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
                 V N+LV+MY + G +     VFE+   ++S++W+A+ + +    + +  +R+F 
Sbjct: 251 MVGFVSVENSLVTMYAKAGCMDAAFHVFESSKERNSITWSAMITGYSQNGNAESAVRMFS 310

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           QM   GF P   T + +L ACS +  +  GKQ H   +K   +    V ++LVDMY K G
Sbjct: 311 QMHAAGFPPTEFTLVGVLNACSDVGTLMEGKQAHGLMVKLGFEVQVYVKSALVDMYAKCG 370

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
           C+ DA   F+  +  D+  +TA++T + Q GE E AL  + +M  EG+  N  T+ S L 
Sbjct: 371 CIGDAKECFNQFSELDIVLWTAMVTGHVQNGEFEQALMLYARMDKEGVFPNTLTITSLLR 430

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+ +A L  G+ LH+  +K G  L   V +AL  MY+KCG+++D   VF+    RD  +
Sbjct: 431 ACAGLAALEPGKQLHTQILKFGFGLGASVGSALSTMYSKCGNLEDGMVVFRRMPHRDVIA 490

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN +I G+ ++G G  A+  F  M  EG  PD +TF+ VL ACSHMGL++ G  +F S+ 
Sbjct: 491 WNSIISGFSQNGRGNDAINLFEEMKLEGTAPDPVTFINVLCACSHMGLVDRGWTYFRSMI 550

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           K YG+TP + H+ACM+DIL RAG  +E ++FI    +     +W  +LGAC    + ++ 
Sbjct: 551 KDYGLTPRLDHYACMVDILSRAGMLSEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVG 610

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
               EKL++L     + Y+  S+I A Q +WND   VR L+   G+ K+P CSW+E++
Sbjct: 611 AYAGEKLMDLGTGDSAAYILLSNIYAAQRKWNDVERVRYLMKLVGVSKDPGCSWVELN 668



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 130/431 (30%), Positives = 212/431 (49%), Gaps = 7/431 (1%)

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCG--LADNALKVFYRIKDP--DVVAWGAI 123
           + G+ +HA A++ G +    +S SL+  YS         A  VF  I     DV +W ++
Sbjct: 29  RDGEALHAWALKSGSSSHAPVSNSLITFYSSFPRLFLPAAFAVFADIPAAARDVASWNSL 88

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY-G 182
           +  L         +   +++  S++ P+     +   A         G  +HA+ CK   
Sbjct: 89  LNPLSHHRPLAALSHFRSMLSSSTILPSPHSFAAAFTAAARAHSASAGAVVHALACKLPS 148

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
             S+  V  AL++MY + G +     VF+ + H++ VSW A+ + +   +   +   +F 
Sbjct: 149 ASSNVFVSTALLNMYCKLGLIPDAQLVFDEMPHRNEVSWAAMVAGYAARKCSQEAFELFR 208

Query: 243 QMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
           QML +     N      +L A S    +  G Q+H   +K  + G   V  SLV MY K+
Sbjct: 209 QMLGECPLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVKDGMVGFVSVENSLVTMYAKA 268

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           GC++ A   F+S   ++   ++A+IT Y+Q G AE A++ F +M   G    EFTL   L
Sbjct: 269 GCMDAAFHVFESSKERNSITWSAMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVL 328

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           N CS V TL  G+  H + VK G  + ++V +ALV MYAKCG I DA+  F   +  D  
Sbjct: 329 NACSDVGTLMEGKQAHGLMVKLGFEVQVYVKSALVDMYAKCGCIGDAKECFNQFSELDIV 388

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
            W  M+ G+V++G  E+AL  +  M  EG  P+ +T   +L AC+ +  +E GK+  + I
Sbjct: 389 LWTAMVTGHVQNGEFEQALMLYARMDKEGVFPNTLTITSLLRACAGLAALEPGKQLHTQI 448

Query: 482 KKI-YGITPTI 491
            K  +G+  ++
Sbjct: 449 LKFGFGLGASV 459



 Score =  191 bits (485), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 124/431 (28%), Positives = 205/431 (47%), Gaps = 7/431 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLKGFA 62
           A+ VF  MP  N VSW A++ GYA     Q+   LF  M  +     ++F  + VL   +
Sbjct: 172 AQLVFDEMPHRNEVSWAAMVAGYAARKCSQEAFELFRQMLGECPLHKNEFVATAVLSAIS 231

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
               +  G  VH + ++ G      +  SLV MY+K G  D A  VF   K+ + + W A
Sbjct: 232 VPLGLPMGVQVHGLVVKDGMVGFVSVENSLVTMYAKAGCMDAAFHVFESSKERNSITWSA 291

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +IT   Q G  + A ++F+ M  +   P +F L  ++ A ++ G    G+  H ++ K G
Sbjct: 292 MITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNACSDVGTLMEGKQAHGLMVKLG 351

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           FE    V +ALV MY + G +      F   +  D V W A+ +        +Q L ++ 
Sbjct: 352 FEVQVYVKSALVDMYAKCGCIGDAKECFNQFSELDIVLWTAMVTGHVQNGEFEQALMLYA 411

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M  +G  PN  T   +L+AC+ L+ +  GKQLH   +K        VG++L  MY K G
Sbjct: 412 RMDKEGVFPNTLTITSLLRACAGLAALEPGKQLHTQILKFGFGLGASVGSALSTMYSKCG 471

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            LED  V F  + ++D+ A+ +II+ ++Q G    A+  F +M+LEG   +  T  + L 
Sbjct: 472 NLEDGMVVFRRMPHRDVIAWNSIISGFSQNGRGNDAINLFEEMKLEGTAPDPVTFINVLC 531

Query: 363 GCSPVATLANGRLLHSIAVKTGHL---LDMFVSTALVAMYAKCGSIDDAEAVFKGSAL-R 418
            CS +  +  G       +K   L   LD +    +V + ++ G + +A+   +   +  
Sbjct: 532 ACSHMGLVDRGWTYFRSMIKDYGLTPRLDHY--ACMVDILSRAGMLSEAKDFIESITIDH 589

Query: 419 DTASWNMMIGG 429
            T  W +++G 
Sbjct: 590 GTCLWRIVLGA 600



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 164/308 (53%), Gaps = 1/308 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A  VF+S  E N ++W+A++ GY+++G+ +  + +F  M       ++F+L  VL  
Sbjct: 271 MDAAFHVFESSKERNSITWSAMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNA 330

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ++ G +  G+  H + ++LG  +  ++  +LVDMY+KCG   +A + F +  + D+V W
Sbjct: 331 CSDVGTLMEGKQAHGLMVKLGFEVQVYVKSALVDMYAKCGCIGDAKECFNQFSELDIVLW 390

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A++T   Q G  ++A  ++  M +  V PN   +TSL+RA         G+ +H  I K
Sbjct: 391 TAMVTGHVQNGEFEQALMLYARMDKEGVFPNTLTITSLLRACAGLAALEPGKQLHTQILK 450

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +GF     VG+AL +MY + G +  G  VF  + H+D ++WN++ S F      +  + +
Sbjct: 451 FGFGLGASVGSALSTMYSKCGNLEDGMVVFRRMPHRDVIAWNSIISGFSQNGRGNDAINL 510

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK-HSLDGNHVVGTSLVDMYD 299
           F +M L+G  P+  TFI +L ACS +  V  G       IK + L         +VD+  
Sbjct: 511 FEEMKLEGTAPDPVTFINVLCACSHMGLVDRGWTYFRSMIKDYGLTPRLDHYACMVDILS 570

Query: 300 KSGCLEDA 307
           ++G L +A
Sbjct: 571 RAGMLSEA 578



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 124/427 (29%), Positives = 203/427 (47%), Gaps = 21/427 (4%)

Query: 152 QFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGS--RV 209
           Q   T  +         R GE++HA   K G  S   V N+L++ Y    R+   +   V
Sbjct: 12  QVSHTQFIEHLRRASRPRDGEALHAWALKSGSSSHAPVSNSLITFYSSFPRLFLPAAFAV 71

Query: 210 FEAI--AHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG-FKPNMCTFIVILKACSSL 266
           F  I  A +D  SWN+L +    +  P   L  F  ML      P+  +F     A +  
Sbjct: 72  FADIPAAARDVASWNSLLNPLSHHR-PLAALSHFRSMLSSSTILPSPHSFAAAFTAAARA 130

Query: 267 SDVGFGKQLHAHTIK-HSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
                G  +HA   K  S   N  V T+L++MY K G + DA + FD + +++  ++ A+
Sbjct: 131 HSASAGAVVHALACKLPSASSNVFVSTALLNMYCKLGLIPDAQLVFDEMPHRNEVSWAAM 190

Query: 326 ITSYAQAGEAEMALKCFRKMRLE-GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           +  YA    ++ A + FR+M  E  +  NEF   + L+  S    L  G  +H + VK G
Sbjct: 191 VAGYAARKCSQEAFELFRQMLGECPLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVKDG 250

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
            +  + V  +LV MYAK G +D A  VF+ S  R++ +W+ MI GY ++G  E A+  F 
Sbjct: 251 MVGFVSVENSLVTMYAKAGCMDAAFHVFESSKERNSITWSAMITGYSQNGNAESAVRMFS 310

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGR 503
            M   G+ P E T V VL+ACS +G + EGK+ H   +K  + +   +K  + ++D+  +
Sbjct: 311 QMHAAGFPPTEFTLVGVLNACSDVGTLMEGKQAHGLMVKLGFEVQVYVK--SALVDMYAK 368

Query: 504 AGKFTEI-ENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVF 562
            G   +  E F   ++L  + ++W  ++     +G         E+ L L  +M+   VF
Sbjct: 369 CGCIGDAKECFNQFSEL--DIVLWTAMVTGHVQNGEF-------EQALMLYARMDKEGVF 419

Query: 563 PSDISAT 569
           P+ ++ T
Sbjct: 420 PNTLTIT 426


>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 819

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 198/599 (33%), Positives = 318/599 (53%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A  VF ++P    V+WN ++ GYA+ G G   + LF  M     +  +F L++ +  
Sbjct: 171 MDEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSA 230

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +  G+++ G+ +H  A R     D  +   L+D+Y KC     A K+F  ++  ++V+W
Sbjct: 231 CSALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSW 290

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+   Q     EA  +F  M ++  +P+ F  TS++ +         G  IHA + K
Sbjct: 291 TTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIK 350

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              E+D  V NAL+ MY +   ++    VF+A+A  D++S+NA+   +       + + I
Sbjct: 351 ADLEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNI 410

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M     +P++ TF+ +L   SS   +   KQ+H   IK     +    ++L+D+Y K
Sbjct: 411 FQRMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSK 470

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
              + DA   F+ L  KD+  + ++I  +AQ  + E A+K F ++ L G+  NEFT  + 
Sbjct: 471 CSLVNDAKTVFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVAL 530

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           +   S +A++ +G+  H+  +K G   D  VS AL+ MYAKCG I +   +F+ +   D 
Sbjct: 531 VTVASTLASMFHGQQFHAWIIKAGVDNDPHVSNALIDMYAKCGFIKEGRMLFESTCGEDV 590

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
             WN MI  Y +HG  E+AL+ FR+M +    P+ +TFV VLSAC+H G + EG  HF+S
Sbjct: 591 ICWNSMITTYAQHGHAEEALQVFRLMGEAEVEPNYVTFVGVLSACAHAGFVGEGLNHFNS 650

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +K  Y I P I+H+A ++++ GR+GK    + FI    + P A VW +LL AC   GN E
Sbjct: 651 MKSNYDIEPGIEHYASVVNLFGRSGKLHAAKEFIERMPIKPAAAVWRSLLSACHLFGNAE 710

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +    AE  L  +P     YV  S+I A++G W D   +R  + S G  KE  CSWIEV
Sbjct: 711 IGRYAAEMALLADPTDSGPYVLLSNIYASKGLWADVHNLRQQMDSSGTVKETGCSWIEV 769



 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 161/562 (28%), Positives = 298/562 (53%), Gaps = 11/562 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKF-SKFSLSTVLKGFA 62
           A+ +F  MP  N+VSW ++++ Y + G     + LF + +    +  ++F L++VL+   
Sbjct: 72  ARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQKASCEVPNEFLLASVLRACT 131

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
            S  +  G+ VH +A++L    + ++  +L+++Y+K G  D A+ VF+ +     V W  
Sbjct: 132 QSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLVFHALPVRTPVTWNT 191

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +IT   Q GC   A ++F+ M    V+P++FVL S V A +  G    G  IH    +  
Sbjct: 192 VITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGFLEGGRQIHGYAYRSA 251

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            E+DT V N L+ +Y +  R+S   ++F+ + +++ VSW  + S +       + + +F+
Sbjct: 252 TETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFW 311

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            M   G++P+      IL +C SL+ +  G+Q+HAH IK  L+ +  V  +L+DMY K  
Sbjct: 312 NMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKADLEADEYVKNALIDMYAKCE 371

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            L +A   FD+LA  D  +Y A+I  Y++  +   A+  F++MR   ++ +  T  S L 
Sbjct: 372 HLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLLG 431

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
             S    +   + +H + +K+G  LD++ ++AL+ +Y+KC  ++DA+ VF     +D   
Sbjct: 432 VSSSQLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSKCSLVNDAKTVFNMLHYKDMVI 491

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSI 481
           WN MI G+ ++  GE+A++ F  +L  G  P+E TFV +++  S +  +  G++ H   I
Sbjct: 492 WNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTVASTLASMFHGQQFHAWII 551

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
           K      P + +   +ID+  + G F +    + E+    + + W +++   + HG+ E 
Sbjct: 552 KAGVDNDPHVSN--ALIDMYAKCG-FIKEGRMLFESTCGEDVICWNSMITTYAQHGHAE- 607

Query: 542 DEKDAEKLLEL--EPKMESNYV 561
              +A ++  L  E ++E NYV
Sbjct: 608 ---EALQVFRLMGEAEVEPNYV 626



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/410 (29%), Positives = 206/410 (50%), Gaps = 1/410 (0%)

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127
           +    +HA A   G   D FL+  L+  YS  G   +A  +F R+   ++V+WG++I+  
Sbjct: 35  RLNPAIHARATVAGRLDDLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMY 94

Query: 128 DQQGCCQEAAKIFNLMRESSVK-PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
            Q G    A  +F   +++S + PN+F+L S++RA T++     GE +H +  K   +++
Sbjct: 95  TQHGRDDCAISLFVAFQKASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDAN 154

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             VG AL+++Y + G +     VF A+  +  V+WN + + +         L +F +M +
Sbjct: 155 VYVGTALINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGI 214

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           +G +P+       + ACS+L  +  G+Q+H +  + + + +  V   L+D+Y K   L  
Sbjct: 215 EGVRPDRFVLASAVSACSALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSA 274

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A   FD +  ++L ++T +I+ Y Q      A+  F  M   G + + F   S LN C  
Sbjct: 275 ARKLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGS 334

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           +A +  GR +H+  +K     D +V  AL+ MYAKC  + +A AVF   A  D  S+N M
Sbjct: 335 LAAIWQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAM 394

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
           I GY K+    +A+  F+ M      P  +TFV +L   S    IE  K+
Sbjct: 395 IEGYSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQ 444



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 170/344 (49%), Gaps = 4/344 (1%)

Query: 168 QRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR 227
           +R   +IHA     G   D  + N L+  Y   GR+     +F+ + H++ VSW ++ S 
Sbjct: 34  RRLNPAIHARATVAGRLDDLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISM 93

Query: 228 FQDYESPDQGLRIFYQMLLKGFK-PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDG 286
           +  +   D  + +F        + PN      +L+AC+    V  G+Q+H   +K  LD 
Sbjct: 94  YTQHGRDDCAISLFVAFQKASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDA 153

Query: 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR 346
           N  VGT+L+++Y K GC+++A + F +L  +    +  +IT YAQ G   +AL+ F +M 
Sbjct: 154 NVYVGTALINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMG 213

Query: 347 LEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSID 406
           +EG++ + F LAS ++ CS +  L  GR +H  A ++    D  V   L+ +Y KC  + 
Sbjct: 214 IEGVRPDRFVLASAVSACSALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLS 273

Query: 407 DAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
            A  +F     R+  SW  MI GY+++    +A+  F  M   G+ PD      +L++C 
Sbjct: 274 AARKLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCG 333

Query: 467 HMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTE 509
            +  I +G++ H   IK        +K+   +ID+  +    TE
Sbjct: 334 SLAAIWQGRQIHAHVIKADLEADEYVKN--ALIDMYAKCEHLTE 375



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 4/125 (3%)

Query: 356 TLASCLNGCSPVATLANGRL---LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
           +LA  L  C P       RL   +H+ A   G L D+F++  L+  Y+  G + DA  +F
Sbjct: 17  SLARVLLSCLPTGGDRLRRLNPAIHARATVAGRLDDLFLTNLLLRGYSNLGRLRDARHLF 76

Query: 413 KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG-YVPDEITFVVVLSACSHMGLI 471
                R+  SW  +I  Y +HG  + A+  F         VP+E     VL AC+    +
Sbjct: 77  DRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQKASCEVPNEFLLASVLRACTQSKAV 136

Query: 472 EEGKK 476
             G++
Sbjct: 137 SLGEQ 141


>gi|326494876|dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 783

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 190/596 (31%), Positives = 319/596 (53%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  VF ++P  N V+W A++ GY+++G     + LF  M     +  +F L++    
Sbjct: 188 IDAAMSVFDALPARNPVTWTAVITGYSQAGQAGVALELFGRMGLDGVRPDRFVLASAASA 247

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +  G+++ G+ +H  A R     D  +  +L+D+Y KC     A ++F  +++ ++V+W
Sbjct: 248 CSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDLYCKCSRLLLARRLFDSMENRNLVSW 307

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I    Q     EA  +F  + ++  +P+ F  TS++ +         G  +HA + K
Sbjct: 308 TTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGSLAAIWQGRQVHAHVIK 367

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              ESD  V NAL+ MY +   ++    VFEA+A  D++S+NA+   +         + I
Sbjct: 368 ADLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYARLGDLTGAVEI 427

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M     KP++ TF+ +L   SS SD+   KQ+H   +K     +   G++L+D+Y K
Sbjct: 428 FGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQIHGLIVKSGTSLDLYAGSALIDVYSK 487

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
              ++DA + F  + N+D+  + A+I   AQ    E A+K F ++R+ G+  NEFT  + 
Sbjct: 488 FSLVDDAKLVFSLMQNRDMVIWNAMIFGLAQNERGEEAVKLFARLRVSGLTPNEFTFVAL 547

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           +   S +A++ +G+  H+  +K G   D  +S AL+ MYAKCG I++   +F+ +  +D 
Sbjct: 548 VTVASTLASIFHGQQFHAQIIKAGADSDPHISNALIDMYAKCGFIEEGRLLFESTLGKDV 607

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
             WN MI  Y +HG  E+AL  F MM   G  P+ +TFV VLSAC+H GL++EG  HF+S
Sbjct: 608 ICWNSMISTYAQHGHAEEALHVFGMMEGAGVEPNYVTFVSVLSACAHAGLVDEGLHHFNS 667

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +K  Y + P  +H+A ++++ GR+GK    + FI    + P A +W +LL AC   GN+E
Sbjct: 668 MKTKYAVEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPVATIWRSLLSACHLFGNVE 727

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSW 596
           +     E  L  +P      V  S+I A++G W D   +R  +   G+ KEP  SW
Sbjct: 728 IGRYATEMALLADPADSGPSVLMSNIYASKGLWADAQKLRQGMDCAGVVKEPGYSW 783



 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 176/572 (30%), Positives = 298/572 (52%), Gaps = 19/572 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMK-------DMEKKFSKFSLST 56
           A+R+F SMP  N+VSW + ++ YA+ G     + LF +         D E   ++F L++
Sbjct: 84  ARRLFDSMPSRNLVSWGSAISMYAQHGREDDALLLFAAFPSAGAASPDGEPP-NEFLLAS 142

Query: 57  VLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD 116
            L+  A S   + G+ VH +A +LG   + F+  +LV++Y+K G  D A+ VF  +   +
Sbjct: 143 ALRACAQSRAARFGEQVHGVAAKLGLDANVFVGTALVNLYAKAGRIDAAMSVFDALPARN 202

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
            V W A+IT   Q G    A ++F  M    V+P++FVL S   A +  G    G  IH 
Sbjct: 203 PVTWTAVITGYSQAGQAGVALELFGRMGLDGVRPDRFVLASAASACSGLGFVEGGRQIHG 262

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
              +   ESD  V NAL+ +Y +  R+    R+F+++ +++ VSW  + + +       +
Sbjct: 263 YAYRTAAESDASVVNALIDLYCKCSRLLLARRLFDSMENRNLVSWTTMIAGYMQNSLDTE 322

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            + +F+Q+   G++P++     IL +C SL+ +  G+Q+HAH IK  L+ +  V  +L+D
Sbjct: 323 AMSMFWQLSQAGWQPDVFACTSILNSCGSLAAIWQGRQVHAHVIKADLESDEYVKNALID 382

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           MY K   L +A   F++LA  D  +Y A+I  YA+ G+   A++ F KMR   +K +  T
Sbjct: 383 MYAKCEHLTEARAVFEALAEDDAISYNAMIEGYARLGDLTGAVEIFGKMRYCSLKPSLLT 442

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
             S L   S  + L   + +H + VK+G  LD++  +AL+ +Y+K   +DDA+ VF    
Sbjct: 443 FVSLLGVSSSRSDLELSKQIHGLIVKSGTSLDLYAGSALIDVYSKFSLVDDAKLVFSLMQ 502

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            RD   WN MI G  ++  GE+A++ F  +   G  P+E TFV +++  S +  I  G++
Sbjct: 503 NRDMVIWNAMIFGLAQNERGEEAVKLFARLRVSGLTPNEFTFVALVTVASTLASIFHGQQ 562

Query: 477 -HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
            H   IK      P I +   +ID+  + G F E    + E+ L  + + W +++   + 
Sbjct: 563 FHAQIIKAGADSDPHISN--ALIDMYAKCG-FIEEGRLLFESTLGKDVICWNSMISTYAQ 619

Query: 536 HGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           HG+       AE+ L +   ME   V P+ ++
Sbjct: 620 HGH-------AEEALHVFGMMEGAGVEPNYVT 644



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 134/445 (30%), Positives = 221/445 (49%), Gaps = 10/445 (2%)

Query: 74  HAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCC 133
           HA A+  G   D FL+  L+  YSK G   +A ++F  +   ++V+WG+ I+   Q G  
Sbjct: 53  HARAVVSGLLPDLFLANLLLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISMYAQHGRE 112

Query: 134 QEAAKIFNLMRESSV------KPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDT 187
            +A  +F     +         PN+F+L S +RA  ++   R GE +H V  K G +++ 
Sbjct: 113 DDALLLFAAFPSAGAASPDGEPPNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDANV 172

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK 247
            VG ALV++Y + GR+     VF+A+  ++ V+W A+ + +         L +F +M L 
Sbjct: 173 FVGTALVNLYAKAGRIDAAMSVFDALPARNPVTWTAVITGYSQAGQAGVALELFGRMGLD 232

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           G +P+         ACS L  V  G+Q+H +  + + + +  V  +L+D+Y K   L  A
Sbjct: 233 GVRPDRFVLASAASACSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDLYCKCSRLLLA 292

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367
              FDS+ N++L ++T +I  Y Q      A+  F ++   G + + F   S LN C  +
Sbjct: 293 RRLFDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGSL 352

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
           A +  GR +H+  +K     D +V  AL+ MYAKC  + +A AVF+  A  D  S+N MI
Sbjct: 353 AAIWQGRQVHAHVIKADLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNAMI 412

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGI 487
            GY + G    A+E F  M      P  +TFV +L   S    +E  K+    I K  G 
Sbjct: 413 EGYARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQIHGLIVK-SGT 471

Query: 488 TPTIKHFACMIDILGRAGKFTEIEN 512
           +  +   + +ID+     KF+ +++
Sbjct: 472 SLDLYAGSALIDVY---SKFSLVDD 493


>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 204/654 (31%), Positives = 344/654 (52%), Gaps = 60/654 (9%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           +A+++F +MPE +VVSWN+L++GY  +GD +KV+ +F  M  M   F + + + VLK  +
Sbjct: 126 VAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCS 185

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           +      G  +H +A+++G   D     +L+DMY+KC   D +++ F+ + + + V+W A
Sbjct: 186 SLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSA 245

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           II    Q    +   ++F  M+++ V  +Q    S+ R+       R G  +H    K  
Sbjct: 246 IIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTD 305

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F +D ++G A + MYM+   +S   ++F ++ + +  S+NA+      Y   D+GL +  
Sbjct: 306 FGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIV---GYARSDKGLGLDE 362

Query: 243 QMLLKGFKP------------------------NMCTFIVILK---ACSSLSD------- 268
             L   F+                         N+C    IL     C +L +       
Sbjct: 363 VSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEE 422

Query: 269 ------VGFGKQLHAH-----------------TIKHSLDGNHVVGTSLVDMYDKSGCLE 305
                 V +   + AH                  IK  L  +  VG +L+DMY K G +E
Sbjct: 423 MVSRDAVSWNAIIAAHEQNGNEEKTLSLFIHNRIIKSRLGLDSFVGIALIDMYSKCGMME 482

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
            A    D LA + + ++ AII+ ++   ++E A K F KM   G+  + FT A+ L+ C+
Sbjct: 483 KAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCA 542

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
            + T+  G+ +H+  +K     D ++S+ LV MY+KCG++ D + +F+ +  RD  +WN 
Sbjct: 543 NLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNA 602

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIY 485
           M+ GY +HGLGE+AL+ F  M  E   P+  TF+ VL AC HMGL+E+G  +F S+   Y
Sbjct: 603 MVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNY 662

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKD 545
           G+ P ++H++C++DI+GR+G+ ++    I       +A++W  LL  C  HGN+E+ EK 
Sbjct: 663 GLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKA 722

Query: 546 AEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           A  +L+LEP+  + YV  S+I A  G WN+ + +R ++   G+KKEP CSWIE+
Sbjct: 723 AYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEI 776



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 150/577 (25%), Positives = 245/577 (42%), Gaps = 97/577 (16%)

Query: 51  KFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFY 110
           K + S + +  ++   +  G+  HA  I        F++  L+ MY KC   + A KVF 
Sbjct: 42  KKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFD 101

Query: 111 RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR- 169
            +   D V+W A++     +G    A K+F+ M E  V        SL+      GD R 
Sbjct: 102 GMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDV----VSWNSLISGYLHNGDHRK 157

Query: 170 --------------------------C--------GESIHAVICKYGFESDTLVGNALVS 195
                                     C        G  IH +  K GF+ D + G+AL+ 
Sbjct: 158 VIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLD 217

Query: 196 MYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCT 255
           MY +  ++    + F ++  ++ VSW+A+ +     +    GL +F +M   G   +  T
Sbjct: 218 MYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQST 277

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
           F  + ++C+ LS +  G QLH H +K     + V+GT+ +DMY K   L DA   F+SL 
Sbjct: 278 FASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLP 337

Query: 316 NKDLFAYTAIITSYAQA----GEAEMALK-CFR-----KMRLEGIKSNEFTLASCL--NG 363
           N +L +Y AII  YA++    G  E++L   FR     K  LEG++ +  ++ S    N 
Sbjct: 338 NHNLQSYNAIIVGYARSDKGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNI 397

Query: 364 CSPVATL-----------------------------------ANGR-------LLHSIAV 381
           C   A L                                    NG         +H+  +
Sbjct: 398 CVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFIHNRII 457

Query: 382 KTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALE 441
           K+   LD FV  AL+ MY+KCG ++ AE +    A +   SWN +I G+      E+A +
Sbjct: 458 KSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQK 517

Query: 442 AFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDI 500
            F  ML+ G  PD  T+  +L  C+++  +E GK+ H   IKK       I   + ++D+
Sbjct: 518 TFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYIS--STLVDM 575

Query: 501 LGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
             + G   + +  I E     + + W  ++   + HG
Sbjct: 576 YSKCGNMQDFQ-LIFEKAPNRDFVTWNAMVCGYAQHG 611



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 112/416 (26%), Positives = 198/416 (47%), Gaps = 23/416 (5%)

Query: 126 CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
           C D++  C    +    M  +  KP  FV   L++   +  D      +   +     + 
Sbjct: 52  CSDRKALC-PGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMP----QR 106

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           DT+  NA++  Y   G +    ++F+A+  +D VSWN+L S +       + + +F QM 
Sbjct: 107 DTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMG 166

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
             G   +  TF V+LK+CSSL D G G Q+H   +K   D + V G++L+DMY K   L+
Sbjct: 167 RMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLD 226

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
            +   F S+  K+  +++AII    Q  +    L+ F++M+  G+  ++ T AS    C+
Sbjct: 227 CSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCA 286

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
            ++ L  G  LH  A+KT    D+ + TA + MY KC ++ DA+ +F      +  S+N 
Sbjct: 287 GLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNA 346

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM-GLIEEGKKHFSSIKKI 484
           +I GY +               D+G   DE++      AC+ + G +E  + H  S+K +
Sbjct: 347 IIVGYARS--------------DKGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSL 392

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
                 + +   ++D+ G+ G   E    + E  ++ +A+ W  ++ A   +GN E
Sbjct: 393 CQSNICVAN--AILDMYGKCGALVE-ACLVFEEMVSRDAVSWNAIIAAHEQNGNEE 445



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 116/228 (50%), Gaps = 2/228 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A+++   + E  VVSWNA+++G++     ++    F  M +M      F+ +T+L  
Sbjct: 481 MEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDT 540

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            AN   ++ G+ +HA  I+     D ++S +LVDMYSKCG   +   +F +  + D V W
Sbjct: 541 CANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTW 600

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG-ESIHAVIC 179
            A++    Q G  +EA KIF  M+  +VKPN     +++RA    G    G    H+++ 
Sbjct: 601 NAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLS 660

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-DSVSWNALFS 226
            YG +      + +V +   +G+VS    + E +  + D+V W  L S
Sbjct: 661 NYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLS 708


>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
 gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
          Length = 807

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 208/668 (31%), Positives = 349/668 (52%), Gaps = 74/668 (11%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +   MP+ N VSWN ++   A S    + + ++  M       + F+L++VL     
Sbjct: 95  ARDLLGRMPDRNAVSWNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVLSACGA 154

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G+  H +A+++G   ++F+   L+ MY+KCG   +A+++F  +  P+ V++ A+
Sbjct: 155 VAALDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWMSSPNEVSFTAM 214

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTE--TGDQ------RCGESIH 175
           +  L Q G   +A ++F  M  S+++ +   ++S++ A  +   GD       R  +SIH
Sbjct: 215 MGGLAQSGAVDDALRLFARMSRSAIRVDPVAVSSVLGACAQACAGDYNVARAIRLAQSIH 274

Query: 176 AVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD 235
           A++ + GF+SD  VGN+L+ MY +  ++    +VFE+++    VSWN L + +      +
Sbjct: 275 ALVVRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVFESMSSVSIVSWNILVTGYGQLGCYE 334

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDV-----------------------GFG 272
           + L +   M   GF+PN  T+  +L +C    DV                       G+G
Sbjct: 335 RALEVLDLMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKISKPSVTTWNTLLSGYG 394

Query: 273 K-QLHAHTIK------------------------------------HS------LDGNHV 289
           + +LH  TI+                                    HS      L  +  
Sbjct: 395 QEELHQDTIELFRRMQHQNVQPDRTTLAVILSTCSRLGILELGKQVHSASVKLLLHNDMF 454

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           V + L+DMY K G +  A + F+ +  +D+  + ++I+  A     E A   F++MR  G
Sbjct: 455 VASGLIDMYSKCGQVGIAQIIFNMMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRENG 514

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           +   E + AS +N C+ ++++  GR +H+  +K G+  +++V ++L+ MYAKCG++DDA 
Sbjct: 515 MFPTESSYASMINSCARLSSIPQGRQIHAQVLKDGYDQNVYVGSSLIDMYAKCGNMDDAR 574

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
             F    +++  +WN MI GY ++G GEKA+E F  ML     PD +TF+ VL+ CSH G
Sbjct: 575 LFFNCMIVKNIVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSG 634

Query: 470 LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENL 529
           L++E   +F+S++  YGI P ++H+ C+ID LGRAG+F E+   I +     +A++WE L
Sbjct: 635 LVDEAIAYFNSMESNYGIRPLVEHYTCLIDALGRAGRFAEVVAVIDKMPYKDDAILWEVL 694

Query: 530 LGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589
           L AC  H N EL E  A+ L  L+PK  S YV  S+I AT GR  D S VRAL+SS+G+ 
Sbjct: 695 LAACVVHHNAELGEFAAKHLFRLDPKNPSPYVLLSNIYATLGRHGDASAVRALMSSRGVV 754

Query: 590 KEPSCSWI 597
           K    SW+
Sbjct: 755 KGRGYSWV 762



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 121/527 (22%), Positives = 220/527 (41%), Gaps = 85/527 (16%)

Query: 81  GCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV----------------------- 117
           G A D FL   LV++YS  GL  +AL+ F  +  P+V                       
Sbjct: 40  GLAADTFLLNRLVELYSLSGLPCHALRAFRALPRPNVYSYNAAISAACRAGDLAAARDLL 99

Query: 118 --------VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
                   V+W  +I  + +     EA +++  M +  + P  F L S++ A        
Sbjct: 100 GRMPDRNAVSWNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVLSACGAVAALD 159

Query: 170 CGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
            G   H +  K G + +  V N L+ MY + G V+   R+F+ ++  + VS+ A+     
Sbjct: 160 DGRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWMSSPNEVSFTAMMGGLA 219

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSS--------LSDVGFGKQLHAHTIK 281
              + D  LR+F +M     + +      +L AC+            +   + +HA  ++
Sbjct: 220 QSGAVDDALRLFARMSRSAIRVDPVAVSSVLGACAQACAGDYNVARAIRLAQSIHALVVR 279

Query: 282 HSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKC 341
              D +  VG SL+DMY K   +++A   F+S+++  + ++  ++T Y Q G  E AL+ 
Sbjct: 280 KGFDSDQHVGNSLIDMYAKGMKMDEAMKVFESMSSVSIVSWNILVTGYGQLGCYERALEV 339

Query: 342 FRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAK 401
              M+  G + NE T ++ L  C                                    K
Sbjct: 340 LDLMQESGFEPNEVTYSNMLASC-----------------------------------IK 364

Query: 402 CGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVV 461
              +  A A+F   +     +WN ++ GY +  L +  +E FR M  +   PD  T  V+
Sbjct: 365 ARDVPSARAMFDKISKPSVTTWNTLLSGYGQEELHQDTIELFRRMQHQNVQPDRTTLAVI 424

Query: 462 LSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLT 520
           LS CS +G++E GK+ H +S+K +  +   +   + +ID+  + G+   I   I      
Sbjct: 425 LSTCSRLGILELGKQVHSASVKLL--LHNDMFVASGLIDMYSKCGQ-VGIAQIIFNMMTE 481

Query: 521 PNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            + + W +++   + H    L+    E+  +   +M  N +FP++ S
Sbjct: 482 RDVVCWNSMISGLAIH---SLN----EEAFDFFKQMRENGMFPTESS 521



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/390 (23%), Positives = 164/390 (42%), Gaps = 77/390 (19%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKD---------------- 44
           M+ A +VF+SM  +++VSWN L+ GY + G  ++ + +   M++                
Sbjct: 302 MDEAMKVFESMSSVSIVSWNILVTGYGQLGCYERALEVLDLMQESGFEPNEVTYSNMLAS 361

Query: 45  ------------MEKKFSKFSLS---TVLKGFANS------------------------- 64
                       M  K SK S++   T+L G+                            
Sbjct: 362 CIKARDVPSARAMFDKISKPSVTTWNTLLSGYGQEELHQDTIELFRRMQHQNVQPDRTTL 421

Query: 65  ----------GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
                     G ++ G+ VH+ +++L    D F++  L+DMYSKCG    A  +F  + +
Sbjct: 422 AVILSTCSRLGILELGKQVHSASVKLLLHNDMFVASGLIDMYSKCGQVGIAQIIFNMMTE 481

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
            DVV W ++I+ L      +EA   F  MRE+ + P +    S++ +         G  I
Sbjct: 482 RDVVCWNSMISGLAIHSLNEEAFDFFKQMRENGMFPTESSYASMINSCARLSSIPQGRQI 541

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           HA + K G++ +  VG++L+ MY + G +      F  +  ++ V+WN +   +      
Sbjct: 542 HAQVLKDGYDQNVYVGSSLIDMYAKCGNMDDARLFFNCMIVKNIVAWNEMIHGYAQNGFG 601

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG--- 291
           ++ + +F  ML    KP+  TFI +L  CS    V       A    +S++ N+ +    
Sbjct: 602 EKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVD-----EAIAYFNSMESNYGIRPLV 656

Query: 292 ---TSLVDMYDKSGCLEDAGVAFDSLANKD 318
              T L+D   ++G   +     D +  KD
Sbjct: 657 EHYTCLIDALGRAGRFAEVVAVIDKMPYKD 686



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 7/167 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A+  F  M   N+V+WN +++GYA++G G+K + LF  M   ++K    +   VL G
Sbjct: 570 MDDARLFFNCMIVKNIVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTG 629

Query: 61  FANSGYI-KAGQVVHAMAIRLGC-ALDKFLSCSLVDMYSKCGLADNALKVFYRI--KDPD 116
            ++SG + +A    ++M    G   L +  +C L+D   + G     + V  ++  KD D
Sbjct: 630 CSHSGLVDEAIAYFNSMESNYGIRPLVEHYTC-LIDALGRAGRFAEVVAVIDKMPYKD-D 687

Query: 117 VVAWGAII-TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRAT 162
            + W  ++  C+             +L R     P+ +VL S + AT
Sbjct: 688 AILWEVLLAACVVHHNAELGEFAAKHLFRLDPKNPSPYVLLSNIYAT 734


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 208/609 (34%), Positives = 333/609 (54%), Gaps = 14/609 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM--KDMEKKFSK--FSLSTVLK 59
           A RVFK MPE N+VSWN+++  ++++G  ++   L   M  KD E  F+    +L+TVL 
Sbjct: 238 ALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLP 297

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             A    I  G+ VH +A++L    +  ++ +L+DMYSKCG  ++A  +F    + +VV+
Sbjct: 298 VCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVS 357

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRE-----SSVKPNQFVLTSLVRATTETGDQRCGESI 174
           W  ++      G   +  K F+L+R+       ++ ++  + + V    E       + +
Sbjct: 358 WNTMVGGFSAAG---DIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNLKEL 414

Query: 175 HAVICKYGF-ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           H    K  F  ++ LV NA V+ Y + G +SY  RVF +I  +   SWNAL   +     
Sbjct: 415 HCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSD 474

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
           P   L  ++QM   G  P++ T   +L ACS +  +  GK++H   I++ L+ +  V  S
Sbjct: 475 PRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYIS 534

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           L+ +Y   G L  A V FD++ +K L ++  ++  Y Q G  E AL  FR+M L G++  
Sbjct: 535 LLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPC 594

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
           E ++ S    CS + +L  GR  H  A+K     + F++ +++ MYAK GS+ ++  VF 
Sbjct: 595 EISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFN 654

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
           G   R  ASWN M+ GY  HG  ++A++ F  M   G+ PDE+TF+ VL+AC+H GL+ E
Sbjct: 655 GLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHE 714

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFIT-ETKLTPNALVWENLLGA 532
           G  +   +K ++G+ PT+KH+AC+ID+L RAGK  E     T E    P   +W  LL +
Sbjct: 715 GLTYLDQMKTLFGMNPTLKHYACVIDMLVRAGKLDEALKIATEEMSEEPGVGIWNFLLSS 774

Query: 533 CSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEP 592
           C  H N+E+ EK A KL   EP+   NYV  S++ A  G+W++   VR  +    ++K+ 
Sbjct: 775 CRIHKNLEMGEKIAAKLFVSEPEKPENYVLLSNLYAGSGKWDEVRKVRQRMKEMSLRKDA 834

Query: 593 SCSWIEVDG 601
            CSWIE++G
Sbjct: 835 GCSWIELNG 843



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 127/421 (30%), Positives = 216/421 (51%), Gaps = 13/421 (3%)

Query: 67  IKAGQVVHAM---AIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           I+ G+ +H +   + RL  + D  L   ++ MYS CG  D++  VF  ++  ++  W A+
Sbjct: 97  IQLGRKIHQLVSESARL--SNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAV 154

Query: 124 ITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I+   +        ++F  ++ ES + P+ F    +V+A     + + G ++H ++ K  
Sbjct: 155 ISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTR 214

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
              D  V NALVS Y  NG VS   RVF+ +  ++ VSWN++   F D    ++   +  
Sbjct: 215 LVEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLG 274

Query: 243 QMLLK----GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           QM+ K     F P++ T   +L  C+   ++G GK +H   +K SLD   VV  +L+DMY
Sbjct: 275 QMMEKDDEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMY 334

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG--IKSNEFT 356
            K GC+ DA V F    NK++ ++  ++  ++ AG+        R+M   G  ++++E T
Sbjct: 335 SKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVT 394

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLL-DMFVSTALVAMYAKCGSIDDAEAVFKGS 415
           + + +  C   + L N + LH  ++K   +  +  V+ A VA YAKCGS+  A  VF   
Sbjct: 395 ILNAVPVCFEESVLPNLKELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSI 454

Query: 416 ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
             +   SWN +IGGY +      +L+A+  M   G +PD  T   +LSACS +  ++ GK
Sbjct: 455 RSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGK 514

Query: 476 K 476
           +
Sbjct: 515 E 515



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 128/516 (24%), Positives = 205/516 (39%), Gaps = 72/516 (13%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A RVF S+    V SWNAL+ GY++S D +  +  +  MK        F++ ++L  
Sbjct: 444 LSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSA 503

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    +K G+ VH + IR     D F+  SL+ +Y  CG    A  +F  ++D  +V+W
Sbjct: 504 CSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSW 563

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             ++    Q G  + A  +F  M    V+P +  + S+  A +     R G   H    K
Sbjct: 564 NTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALK 623

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              E +  +  +++ MY +NG V    +VF  +  +   SWNA+   +  +    + +++
Sbjct: 624 CLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKL 683

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M   G  P+  TF+ +L AC+           H+  +   L       T L  M   
Sbjct: 684 FEEMQRTGHCPDELTFLGVLTACN-----------HSGLVHEGL-------TYLDQMKTL 725

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE--GIKSNEFTLA 358
            G             N  L  Y  +I    +AG+ + ALK   +   E  G+    F L+
Sbjct: 726 FG------------MNPTLKHYACVIDMLVRAGKLDEALKIATEEMSEEPGVGIWNFLLS 773

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA--------LVAMYAKCGSIDDAEA 410
           SC           N  +   IA K      +FVS          L  +YA  G  D+   
Sbjct: 774 SC-------RIHKNLEMGEKIAAK------LFVSEPEKPENYVLLSNLYAGSGKWDEVRK 820

Query: 411 V---FKGSALRDTA--SWNMMIGGYVKHGLGEKALEAF-----------RMMLDEGYVPD 454
           V    K  +LR  A  SW  + G       GE +L+ F           R +   GY PD
Sbjct: 821 VRQRMKEMSLRKDAGCSWIELNGKVFSFVAGESSLDGFEEIKSLWSVLEREIGKMGYRPD 880

Query: 455 EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT 490
             +   V    S     E+ + H   +   YG+  T
Sbjct: 881 TSS---VQHDLSEEEKTEQLRGHSEKLAITYGLIRT 913



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 136/285 (47%), Gaps = 8/285 (2%)

Query: 261 KACSSLSDVGFGKQLHAHTIKHS-LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL 319
           +A     D+  G+++H    + + L  + V+ T ++ MY   G  +D+   FD+L  K+L
Sbjct: 89  QASGRRKDIQLGRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNL 148

Query: 320 FAYTAIITSYAQAGEAEMALKCFRKMRLE-GIKSNEFTLASCLNGCSPVATLANGRLLHS 378
           F + A+I+SY++       L+ F KM  E G+  + FT    +  C+ V+ +  G  +H 
Sbjct: 149 FQWNAVISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHG 208

Query: 379 IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEK 438
           + VKT  + D+FVS ALV+ Y   GS+ DA  VFK    R+  SWN MI  +  +GL E+
Sbjct: 209 LVVKTRLVEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEE 268

Query: 439 ALEAFRMMLDE----GYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHF 494
                  M+++     + PD  T   VL  C+    I  GK       K+      + + 
Sbjct: 269 CFLLLGQMMEKDDEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNN 328

Query: 495 ACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           A M D+  + G   + +  I +     N + W  ++G  S  G+I
Sbjct: 329 ALM-DMYSKCGCINDAQ-VIFKLNNNKNVVSWNTMVGGFSAAGDI 371


>gi|222629201|gb|EEE61333.1| hypothetical protein OsJ_15451 [Oryza sativa Japonica Group]
          Length = 1037

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 204/599 (34%), Positives = 320/599 (53%), Gaps = 3/599 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AK VF    E N+V WNA+L G+ ++   ++ + +F  M     +  +F+  ++L     
Sbjct: 389 AKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTY 448

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G+ VH + I+    +  F++ + +DMYSK G   +A  +F  I   D ++W A+
Sbjct: 449 LSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNAL 508

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
              L Q    +EA  +   MR   + P+    ++ + A +       G+ IH +  KYG 
Sbjct: 509 TVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGI 568

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            S+  VG++L+ +Y ++G V    ++F  +     V  NAL + F    + D+ +++F Q
Sbjct: 569 CSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQ 628

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS-LDGNHVVGTSLVDMYDKSG 302
           +L  G KP+  TF  IL  CS   +   GKQ+H +T+K   L  + ++G SL  +Y KS 
Sbjct: 629 VLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSK 688

Query: 303 CLEDAGVAFDSLAN-KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
            LEDA      + + K+LF +TAII+ YAQ G  + +L  F +MR   ++S+E T AS L
Sbjct: 689 MLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVL 748

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG-SALRDT 420
             CS V   A+G+ +H +  K+G       ++AL+ MY+KCG +  +   FK     +D 
Sbjct: 749 KACSDVTAFADGKEIHGLITKSGFGSYETATSALIDMYSKCGDVISSFEAFKELKNKQDI 808

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
             WN MI G+ K+G  ++AL  F+ M +    PDE+TF+ VL AC+H GLI EG+  F S
Sbjct: 809 MPWNSMIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVLIACTHSGLISEGRHFFGS 868

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           ++K+YG+TP + H+AC ID+LGR G   E +  I +    P+ +VW   L AC  H + E
Sbjct: 869 MRKVYGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPDGVVWATYLAACRMHKDEE 928

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
             +  A KL+ELEP+  S YV  S + A  G W +    R  +  +G+ K P CSWI V
Sbjct: 929 RGKIAARKLVELEPQYSSTYVLLSSLHAATGNWAEAKVTRESMREKGVAKFPGCSWITV 987



 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 155/570 (27%), Positives = 281/570 (49%), Gaps = 12/570 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  + K MP  + V+WNA+++G+A+SG    V+ L+  M+      ++ + +++L  
Sbjct: 285 LDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSA 344

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            AN      GQ +HA A+  G   + F+  SL+++Y+KCG   +A  VF    + ++V W
Sbjct: 345 AANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMW 404

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A++T   Q    +EA ++F  M   +++ ++F   S++ A T       G+ +H V  K
Sbjct: 405 NAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIK 464

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              +    V NA + MY + G +     +F  I ++DS+SWNAL          ++ + +
Sbjct: 465 NCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCM 524

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
             +M L G  P+  +F   + ACS++     GKQ+H   IK+ +  NH VG+SL+D+Y K
Sbjct: 525 LKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSK 584

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +E +   F  +    +    A+I  + Q    + A++ F+++  +G+K +  T +S 
Sbjct: 585 HGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSI 644

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLL-DMFVSTALVAMYAKCGSIDDAEAVF-KGSALR 418
           L+GCS     A G+ +H   +K+G L  D  +  +L  +Y K   ++DA  +  +    +
Sbjct: 645 LSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHK 704

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-H 477
           +   W  +I GY ++G G+ +L +F  M       DE TF  VL ACS +    +GK+ H
Sbjct: 705 NLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDVTAFADGKEIH 764

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
               K  +G   T    + +ID+  + G          E K   + + W +++   + +G
Sbjct: 765 GLITKSGFGSYETAT--SALIDMYSKCGDVISSFEAFKELKNKQDIMPWNSMIVGFAKNG 822

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDIS 567
                   A++ L L  KME   + P +++
Sbjct: 823 Y-------ADEALLLFQKMEELQIKPDEVT 845



 Score =  218 bits (555), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 141/512 (27%), Positives = 248/512 (48%), Gaps = 43/512 (8%)

Query: 20  NALLNGYAESGDGQKVMHLFCSMK-DMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAI 78
           ++LL+ +A SG    V+  F  ++     +  +F L+ VL   +  G +  G+ VH   +
Sbjct: 136 SSLLSCHARSGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVV 195

Query: 79  RLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAK 138
           + G +   F   +LVDMY+KCG   NA +VF  I  PD + W ++I C  + GC QEA  
Sbjct: 196 KSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALA 255

Query: 139 IFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYM 198
           +F+ M +    P+Q  L +                                   ++S   
Sbjct: 256 LFSRMDKMGSAPDQVTLVT-----------------------------------IISTLA 280

Query: 199 ENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIV 258
            +GR+ + + + + +    +V+WNA+ S           L ++  M   G  P   TF  
Sbjct: 281 SSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFAS 340

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKD 318
           +L A +++     G+Q+HA  + H LD N  VG+SL+++Y K GC  DA   FD    K+
Sbjct: 341 MLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKN 400

Query: 319 LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHS 378
           +  + A++T + Q    E A++ F+ M    ++++EFT  S L  C+ +++   G+ +H 
Sbjct: 401 IVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHC 460

Query: 379 IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEK 438
           + +K    + +FV+ A + MY+K G+I DA+A+F     +D+ SWN +  G  ++   E+
Sbjct: 461 VTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQNLEEEE 520

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACM 497
           A+   + M   G  PD+++F   ++ACS++   E GK+ H  +IK  YGI       + +
Sbjct: 521 AVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIK--YGICSNHAVGSSL 578

Query: 498 IDILGRAGKFTEIENFITE---TKLTP-NALV 525
           ID+  + G          +   + + P NAL+
Sbjct: 579 IDLYSKHGDVESSRKIFAQVDASSIVPINALI 610



 Score =  207 bits (528), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 121/463 (26%), Positives = 223/463 (48%), Gaps = 35/463 (7%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+RVF  +   + + W++++  Y   G  Q+ + LF  M  M     + +L T++   A+
Sbjct: 222 ARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLAS 281

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           SG +                                   D+A  +  ++  P  VAW A+
Sbjct: 282 SGRL-----------------------------------DHATALLKKMPTPSTVAWNAV 306

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   Q G       ++  MR   + P +    S++ A         G+ +HA    +G 
Sbjct: 307 ISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGL 366

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           +++  VG++L+++Y + G  S    VF+    ++ V WNA+ + F   E P++ +R+F  
Sbjct: 367 DANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQY 426

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M+    + +  TF+ IL AC+ LS    GKQ+H  TIK+ +D +  V  + +DMY K G 
Sbjct: 427 MMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGA 486

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           + DA   F  +  KD  ++ A+    AQ  E E A+   ++MRL GI  ++ + ++ +N 
Sbjct: 487 IGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINA 546

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           CS +     G+ +H +A+K G   +  V ++L+ +Y+K G ++ +  +F           
Sbjct: 547 CSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPI 606

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
           N +I G+V++   ++A++ F+ +L +G  P  +TF  +LS CS
Sbjct: 607 NALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCS 649



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 130/522 (24%), Positives = 233/522 (44%), Gaps = 52/522 (9%)

Query: 71  QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
           + +H   +R G  L   L  SLV++Y K G    A        +    A  ++++C  + 
Sbjct: 86  RALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARS 145

Query: 131 GCCQEAAKIFNLMR-ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
           G   +    F  +R  +  +P+QF L  ++ A +  G    G  +H  + K GF S    
Sbjct: 146 GSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFC 205

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
             ALV MY + G V    RVF+ IA  D++ W+++ + +       + L +F +M   G 
Sbjct: 206 EAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGS 265

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
            P+  T + I+   +S                                   SG L+ A  
Sbjct: 266 APDQVTLVTIISTLAS-----------------------------------SGRLDHATA 290

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369
               +      A+ A+I+ +AQ+G     L  ++ MR  G+     T AS L+  + +  
Sbjct: 291 LLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKA 350

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
              G+ +H+ AV  G   ++FV ++L+ +YAKCG   DA+ VF  S  ++   WN M+ G
Sbjct: 351 FVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTG 410

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGIT 488
           +V++ L E+A+  F+ M+      DE TFV +L AC+++     GK+ H  +IK    I+
Sbjct: 411 FVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDIS 470

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTP--NALVWENLLGACSWHGNIELDEKDA 546
             + +    +D+  + G   + +   +   L P  +++ W  L    + +    L+E++A
Sbjct: 471 LFVAN--ATLDMYSKYGAIGDAKALFS---LIPYKDSISWNALTVGLAQN----LEEEEA 521

Query: 547 EKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGI 588
             +L+   +M  + + P D+S +    N  S +RA  + + I
Sbjct: 522 VCMLK---RMRLHGITPDDVSFSTA-INACSNIRATETGKQI 559



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 160/365 (43%), Gaps = 41/365 (11%)

Query: 168 QRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR 227
           Q C  ++H  I + G      +G++LV +Y ++GRV Y          + S + ++L S 
Sbjct: 83  QTC-RALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSC 141

Query: 228 FQDYESPDQGLRIF-YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDG 286
                SP   L  F Y     G +P+     V+L ACS +  + +G+Q+H   +K     
Sbjct: 142 HARSGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSS 201

Query: 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR 346
           +     +LVDMY K G + +A   FD +A  D   ++++I  Y + G  + AL  F +M 
Sbjct: 202 SVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMD 261

Query: 347 LEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSID 406
             G   ++ TL +                                   +++  A  G +D
Sbjct: 262 KMGSAPDQVTLVT-----------------------------------IISTLASSGRLD 286

Query: 407 DAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
            A A+ K      T +WN +I G+ + GL    L  ++ M   G  P   TF  +LSA +
Sbjct: 287 HATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAA 346

Query: 467 HMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV 525
           +M    EG++ H +++  ++G+   +   + +I++  + G  ++ +N + +     N ++
Sbjct: 347 NMKAFVEGQQMHAAAV--MHGLDANVFVGSSLINLYAKCGCPSDAKN-VFDLSCEKNIVM 403

Query: 526 WENLL 530
           W  +L
Sbjct: 404 WNAML 408


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 207/599 (34%), Positives = 328/599 (54%), Gaps = 10/599 (1%)

Query: 5   KRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANS 64
           + VF  M E NVV+W  L++GYA +   ++V+ LF  M+D   + + F+ +  L   A  
Sbjct: 152 RNVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEE 211

Query: 65  GYIKAGQVVHAMAIRLGCALDKFL--SCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           G    G  VH + ++ G  LDK +  S SL+++Y KCG    A  +F + +   VV W +
Sbjct: 212 GVGGRGLQVHTVVVKNG--LDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNS 269

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I+     G   EA  +F  MR + V+ ++    S+++      + R  E +H  + KYG
Sbjct: 270 MISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYG 329

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAH-QDSVSWNALFSRFQDYESPDQGLRIF 241
           F  D  +  AL+  Y +   +    R+F+      + VSW A+ S F   +  ++ + +F
Sbjct: 330 FVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLF 389

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M  KG +PN  T+ VIL A   +S      ++HA  +K + + +  VGT+L+D Y K 
Sbjct: 390 SEMKRKGVRPNEFTYSVILTALPVISP----SEVHAQVVKTNYERSSTVGTALLDAYVKL 445

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G +++A   F  + NKD+ A++A++  YAQAGE E A+K F ++   G+K NEFT +S L
Sbjct: 446 GKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSIL 505

Query: 362 NGCSPV-ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           N C+   A++  G+  H  A+K+     + VS+AL+ MYAK G I+ AE VFK    +D 
Sbjct: 506 NVCAATTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDL 565

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SWN MI GY +HG   KAL+ F+ M       D +TF+ V +AC+H GL+EEG+K+F  
Sbjct: 566 VSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDI 625

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + +   I PT +H +CM+D+  RAG+  +    I        + +W  +L AC  H   E
Sbjct: 626 MVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVHKKTE 685

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           L    AEK++ + P+  + YV  S++ A  G W + + VR L++ + +KKEP  SWIEV
Sbjct: 686 LGRLAAEKIIAMIPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEV 744



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 130/466 (27%), Positives = 229/466 (49%), Gaps = 9/466 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A  +F   P+ +  S+ +LL G++  G  Q+   LF +++ +  +      S+VLK  A 
Sbjct: 50  AHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSAT 109

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G+ +H   I+ G   D  +  SLVD Y K     +   VF  +K+ +VV W  +
Sbjct: 110 LCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTL 169

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   +    +E   +F  M++   +PN F   + +    E G    G  +H V+ K G 
Sbjct: 170 ISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGL 229

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           +    V N+L+++Y++ G V     +F+    +  V+WN++ S +       + L +FY 
Sbjct: 230 DKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYS 289

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M L   + +  +F  I+K C++L ++ F +QLH   +K+    +  + T+L+  Y K   
Sbjct: 290 MRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMA 349

Query: 304 LEDAGVAFDS---LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
           + DA   F     L N  + ++TA+I+ + Q    E A+  F +M+ +G++ NEFT +  
Sbjct: 350 MLDALRLFKETGFLGN--VVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVI 407

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L    PV + +    +H+  VKT +     V TAL+  Y K G +D+A  VF G   +D 
Sbjct: 408 LTAL-PVISPSE---VHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDI 463

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
            +W+ M+ GY + G  E A++ F  +   G  P+E TF  +L+ C+
Sbjct: 464 VAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCA 509



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 117/437 (26%), Positives = 210/437 (48%), Gaps = 7/437 (1%)

Query: 105 ALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTE 164
           A  +F +  D D  ++ +++    + G  QEA ++F  ++   ++ +  + +S+++ +  
Sbjct: 50  AHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSAT 109

Query: 165 TGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNAL 224
             D+  G  +H    K+GF  D  VG +LV  YM+      G  VF+ +  ++ V+W  L
Sbjct: 110 LCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTL 169

Query: 225 FSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL 284
            S +      ++ L +F +M  +G +PN  TF   L   +     G G Q+H   +K+ L
Sbjct: 170 ISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGL 229

Query: 285 DGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRK 344
           D    V  SL+++Y K G +  A + FD    K +  + ++I+ YA  G    AL  F  
Sbjct: 230 DKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYS 289

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404
           MRL  ++ +E + AS +  C+ +  L     LH   VK G + D  + TAL+  Y+KC +
Sbjct: 290 MRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMA 349

Query: 405 IDDAEAVFKGSA-LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           + DA  +FK +  L +  SW  MI G++++   E+A+  F  M  +G  P+E T+ V+L+
Sbjct: 350 MLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILT 409

Query: 464 ACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNA 523
           A   + +I   + H   +K  Y  + T+     ++D   + GK  E     +      + 
Sbjct: 410 A---LPVISPSEVHAQVVKTNYERSSTVG--TALLDAYVKLGKVDEAAKVFSGID-NKDI 463

Query: 524 LVWENLLGACSWHGNIE 540
           + W  +L   +  G  E
Sbjct: 464 VAWSAMLAGYAQAGETE 480



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 140/299 (46%), Gaps = 2/299 (0%)

Query: 172 ESIHAVICKYGFESDTLVGNALVSMY--MENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
           E+     C Y  E   L  N  +  +    + R+ Y   +F+    +D  S+ +L   F 
Sbjct: 14  ENFKLKFCIYANELGNLKPNFRIYCFGAASSSRLYYAHNLFDKSPDRDRESYTSLLFGFS 73

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
                 +  R+F  +   G + +   F  +LK  ++L D  FG+QLH   IK     +  
Sbjct: 74  RDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVS 133

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           VGTSLVD Y K    +D    FD +  +++  +T +I+ YA+    E  L  F +M+ EG
Sbjct: 134 VGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEG 193

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
            + N FT A+ L   +       G  +H++ VK G    + VS +L+ +Y KCG++  A 
Sbjct: 194 TQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKAR 253

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
            +F  + ++   +WN MI GY  +GL  +AL  F  M        E +F  ++  C+++
Sbjct: 254 ILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANL 312



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 1/109 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ VFK   E ++VSWN++++GYA+ G   K + +F  MK  + K    +   V   
Sbjct: 550 IESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAA 609

Query: 61  FANSGYIKAGQVVHAMAIR-LGCALDKFLSCSLVDMYSKCGLADNALKV 108
             ++G ++ G+    + +R    A  K  +  +VD+YS+ G  + A+KV
Sbjct: 610 CTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKV 658


>gi|357457743|ref|XP_003599152.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488200|gb|AES69403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 196/600 (32%), Positives = 323/600 (53%), Gaps = 4/600 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A RVF +M E + +SWN+++   A +G  ++ +  F  M+    K    ++S +L  
Sbjct: 402 VEEASRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRRTHPKTDYITISALLPA 461

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             ++ ++K G+ +H +  + G   +  +  SL+ MY++ G +++A  VF+ +   D+++W
Sbjct: 462 CGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSEDAELVFHTMPARDLISW 521

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +++    + G    A  +   M ++    N    T+ + A       +    +HA +  
Sbjct: 522 NSMMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSACYNLEKLKI---VHAFVIH 578

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +    + ++GN LV+MY + G +    +V + +  +D V+WNAL     D + P+  ++ 
Sbjct: 579 FAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPERDVVTWNALIGGHADDKDPNATIQA 638

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDV-GFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           F  M  +G   N  T + +L  C S   +   G  +HAH +    + +  V +SL+ MY 
Sbjct: 639 FNLMRREGLLSNYITIVNLLGTCMSPDYLLKHGMPIHAHIVVAGFELDTYVQSSLITMYA 698

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           + G L  +   FD LANK+   + AI ++ A  G  E ALK   +MR +G+  ++F+ + 
Sbjct: 699 QCGDLNTSSYIFDVLANKNSSTWNAIFSANAHYGPGEEALKFIARMRNDGVDLDQFSFSV 758

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L     +  L  G+ LHS  +K G  LD +V  A + MY KCG IDD   +     +R 
Sbjct: 759 ALATIGNLTVLDEGQQLHSWIIKLGFELDEYVLNATMDMYGKCGEIDDVFRILPIPKIRS 818

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SWN++I    +HG   +A EAF  MLD G  PD +TFV +LSACSH GL++EG  +FS
Sbjct: 819 KRSWNILISALARHGFFRQATEAFHEMLDLGLKPDHVTFVSLLSACSHGGLVDEGLVYFS 878

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           S+   +G+   I+H  C+ID+LGR+G+  E E FI +  + PN  VW +LL AC  HGN+
Sbjct: 879 SMTSEFGVPTAIEHCVCIIDLLGRSGRLAEAEGFIDKMPVPPNEFVWRSLLAACKVHGNL 938

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           EL  K A++L EL    +S YV  S++ A+  RW D   VR  + SQ +KK+P+CSWI++
Sbjct: 939 ELGRKAADRLFELNSSDDSAYVLYSNVCASTQRWGDVENVRKQMESQSLKKKPACSWIKL 998



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 123/467 (26%), Positives = 229/467 (49%), Gaps = 5/467 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+ VF  M + N  SWN +++G+   G   K M  FC M +     S + +++++  
Sbjct: 198 IKYAQHVFDKMYDRNDASWNNMISGFVRVGWYHKAMQFFCHMFENGVTPSSYVIASMVTA 257

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
              SG +  G + +H   ++ G   + F+  SL+  Y   G    A K+F  I++P++V+
Sbjct: 258 CDRSGCMTEGARQIHGYVVKCGLMSNVFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVS 317

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W +++ C    G  +E   I+  +R + +      + +++R     GD+  G  I   + 
Sbjct: 318 WTSLMVCYADNGHTKEVLNIYRHLRHNGLICTGNTMATVIRTCGMFGDKTMGYQILGDVI 377

Query: 180 KYGFESDTL-VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
           K G ++ ++ V N+L+SM+     V   SRVF  +  +D++SWN++ +        ++ L
Sbjct: 378 KSGLDTSSVSVANSLISMFGNYDSVEEASRVFNNMQERDTISWNSIITASAHNGRFEESL 437

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
             F+ M     K +  T   +L AC S   + +G+ LH    K  L+ N  V  SL+ MY
Sbjct: 438 GHFFWMRRTHPKTDYITISALLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMY 497

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            ++G  EDA + F ++  +DL ++ +++ S+ + G+   A+    +M       N  T  
Sbjct: 498 AQAGSSEDAELVFHTMPARDLISWNSMMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFT 557

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           + L+ C  +  L   +++H+  +      ++ +   LV MY K G +D+A+ V K    R
Sbjct: 558 TALSACYNLEKL---KIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPER 614

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC 465
           D  +WN +IGG+         ++AF +M  EG + + IT V +L  C
Sbjct: 615 DVVTWNALIGGHADDKDPNATIQAFNLMRREGLLSNYITIVNLLGTC 661



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 145/518 (27%), Positives = 240/518 (46%), Gaps = 35/518 (6%)

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
           KGF+       G+ +HA+ ++     + F + +LV+MYSK G    A  VF ++ D +  
Sbjct: 155 KGFSEISEGNVGKALHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDA 214

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG-ESIHAV 177
           +W  +I+   + G   +A + F  M E+ V P+ +V+ S+V A   +G    G   IH  
Sbjct: 215 SWNNMISGFVRVGWYHKAMQFFCHMFENGVTPSSYVIASMVTACDRSGCMTEGARQIHGY 274

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
           + K G  S+  VG +L+  Y  +G VS  +++FE I   + VSW +L   + D     + 
Sbjct: 275 VVKCGLMSNVFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEV 334

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGTSLVD 296
           L I+  +   G      T   +++ C    D   G Q+    IK  LD + V V  SL+ 
Sbjct: 335 LNIYRHLRHNGLICTGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLIS 394

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           M+     +E+A   F+++  +D  ++ +IIT+ A  G  E +L  F  MR    K++  T
Sbjct: 395 MFGNYDSVEEASRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRRTHPKTDYIT 454

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
           +++ L  C     L  GR LH +  K+G   ++ V  +L++MYA+ GS +DAE VF    
Sbjct: 455 ISALLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSEDAELVFHTMP 514

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            RD  SWN M+  +V+ G    A+     ML      + +TF   LSAC           
Sbjct: 515 ARDLISWNSMMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSAC----------- 563

Query: 477 HFSSIKKIYGITPTIKHFACMID-ILGRA-----GKFTEIENFITETKLTP--NALVWEN 528
              +++K+  +   + HFA   + I+G       GKF  ++      K+ P  + + W  
Sbjct: 564 --YNLEKLKIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPERDVVTWNA 621

Query: 529 LLGACSWHGNIELDEKDAEKLLELEPKME-----SNYV 561
           L+G          D+KD    ++    M      SNY+
Sbjct: 622 LIGG-------HADDKDPNATIQAFNLMRREGLLSNYI 652



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/422 (23%), Positives = 190/422 (45%), Gaps = 16/422 (3%)

Query: 120 WGAIITCLDQ-QGCCQE----AAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
           +  ++ C +Q + C +E    +  I   +R  S   N  V   L +  +E  +   G+++
Sbjct: 113 YSPLLNCQNQLETCVKENEFLSYGIHTFIRNHS---NPQVSRFLQKGFSEISEGNVGKAL 169

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           HA+  K   + +T   N LV+MY + G + Y   VF+ +  ++  SWN + S F      
Sbjct: 170 HALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDASWNNMISGFVRVGWY 229

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFG-KQLHAHTIKHSLDGNHVVGTS 293
            + ++ F  M   G  P+      ++ AC     +  G +Q+H + +K  L  N  VGTS
Sbjct: 230 HKAMQFFCHMFENGVTPSSYVIASMVTACDRSGCMTEGARQIHGYVVKCGLMSNVFVGTS 289

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           L+  Y   G + +A   F+ +   ++ ++T+++  YA  G  +  L  +R +R  G+   
Sbjct: 290 LLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRHLRHNGLICT 349

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLD---MFVSTALVAMYAKCGSIDDAEA 410
             T+A+ +  C        G  +    +K+G  LD   + V+ +L++M+    S+++A  
Sbjct: 350 GNTMATVIRTCGMFGDKTMGYQILGDVIKSG--LDTSSVSVANSLISMFGNYDSVEEASR 407

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           VF     RDT SWN +I     +G  E++L  F  M       D IT   +L AC     
Sbjct: 408 VFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRRTHPKTDYITISALLPACGSAQH 467

Query: 471 IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
           ++ G+     I K  G+   +     ++ +  +AG   + E  +  T    + + W +++
Sbjct: 468 LKWGRGLHGLITK-SGLESNVCVCNSLLSMYAQAGSSEDAE-LVFHTMPARDLISWNSMM 525

Query: 531 GA 532
            +
Sbjct: 526 AS 527


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 207/599 (34%), Positives = 330/599 (55%), Gaps = 10/599 (1%)

Query: 5   KRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANS 64
           ++VF  M E NVV+W  L++GYA +    +V+ LF  M++   + + F+ +  L   A  
Sbjct: 148 RKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEE 207

Query: 65  GYIKAGQVVHAMAIRLGCALDKFL--SCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           G    G  VH + ++ G  LDK +  S SL+++Y KCG    A  +F + +   VV W +
Sbjct: 208 GVGGRGLQVHTVVVKNG--LDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNS 265

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I+     G   EA  +F  MR + V+ ++    S+++      + R  E +H  + KYG
Sbjct: 266 MISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYG 325

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALFSRFQDYESPDQGLRIF 241
           F  D  +  AL+  Y +   +    R+F+ I    + VSW A+ S F   +  ++ + +F
Sbjct: 326 FLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLF 385

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M  KG +PN  T+ VIL A   +S      ++HA  +K + + +  VGT+L+D Y K 
Sbjct: 386 SEMKRKGVRPNEFTYSVILTALPVISP----SEVHAQVVKTNYERSSTVGTALLDAYVKL 441

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G +E+A   F  + +KD+ A++A++  YAQ GE E A+K F ++   GIK NEFT +S L
Sbjct: 442 GKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSIL 501

Query: 362 NGCSPV-ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           N C+   A++  G+  H  A+K+     + VS+AL+ MYAK G+I+ AE VFK    +D 
Sbjct: 502 NVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDL 561

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SWN MI GY +HG   KAL+ F+ M       D +TF+ V +AC+H GL+EEG+K+F  
Sbjct: 562 VSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDI 621

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + +   I PT +H +CM+D+  RAG+  +    I        + +W  +L AC  H   E
Sbjct: 622 MVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTE 681

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           L    AEK++ ++P+  + YV  S++ A  G W + + VR L++ + +KKEP  SWIEV
Sbjct: 682 LGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEV 740



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 134/536 (25%), Positives = 248/536 (46%), Gaps = 6/536 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A  +F   P  +  S+ +LL G++  G  Q+   LF ++  +  +      S+VLK  A 
Sbjct: 46  AHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSAT 105

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G+ +H   I+ G   D  +  SLVD Y K     +  KVF  +K+ +VV W  +
Sbjct: 106 LCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTL 165

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   +     E   +F  M+    +PN F   + +    E G    G  +H V+ K G 
Sbjct: 166 ISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGL 225

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           +    V N+L+++Y++ G V     +F+    +  V+WN++ S +       + L +FY 
Sbjct: 226 DKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYS 285

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M L   + +  +F  ++K C++L ++ F +QLH   +K+    +  + T+L+  Y K   
Sbjct: 286 MRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTA 345

Query: 304 LEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
           + DA   F  +    ++ ++TA+I+ + Q    E A+  F +M+ +G++ NEFT +  L 
Sbjct: 346 MLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILT 405

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
              PV + +    +H+  VKT +     V TAL+  Y K G +++A  VF G   +D  +
Sbjct: 406 AL-PVISPSE---VHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVA 461

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           W+ M+ GY + G  E A++ F  +   G  P+E TF  +L+ C+         K F    
Sbjct: 462 WSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFA 521

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
               +  ++   + ++ +  + G     E      +   + + W +++   + HG 
Sbjct: 522 IKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQR-EKDLVSWNSMISGYAQHGQ 576



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/438 (26%), Positives = 210/438 (47%), Gaps = 7/438 (1%)

Query: 104 NALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATT 163
           NA  +F +    D  ++ +++    + G  QEA ++F  +    ++ +  + +S+++ + 
Sbjct: 45  NAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSA 104

Query: 164 ETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNA 223
              D+  G  +H    K+GF  D  VG +LV  YM+      G +VF+ +  ++ V+W  
Sbjct: 105 TLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTT 164

Query: 224 LFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS 283
           L S +      D+ L +F +M  +G +PN  TF   L   +     G G Q+H   +K+ 
Sbjct: 165 LISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNG 224

Query: 284 LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFR 343
           LD    V  SL+++Y K G +  A + FD    K +  + ++I+ YA  G    AL  F 
Sbjct: 225 LDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFY 284

Query: 344 KMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403
            MRL  ++ +E + AS +  C+ +  L     LH   VK G L D  + TAL+  Y+KC 
Sbjct: 285 SMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCT 344

Query: 404 SIDDAEAVFKG-SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVL 462
           ++ DA  +FK    + +  SW  MI G++++   E+A++ F  M  +G  P+E T+ V+L
Sbjct: 345 AMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVIL 404

Query: 463 SACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPN 522
           +A   + +I   + H   +K  Y  + T+     ++D   + GK  E     +      +
Sbjct: 405 TA---LPVISPSEVHAQVVKTNYERSSTVG--TALLDAYVKLGKVEEAAKVFSGID-DKD 458

Query: 523 ALVWENLLGACSWHGNIE 540
            + W  +L   +  G  E
Sbjct: 459 IVAWSAMLAGYAQTGETE 476



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 136/283 (48%), Gaps = 4/283 (1%)

Query: 190 GNALVSMY----MENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           G A V +Y    + + R+     +F+    +D  S+ +L   F       +  R+F  + 
Sbjct: 26  GVAQVRIYCFGTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIH 85

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
             G + +   F  +LK  ++L D  FG+QLH   IK     +  VGTSLVD Y K    +
Sbjct: 86  RLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFK 145

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
           D    FD +  +++  +T +I+ YA+    +  L  F +M+ EG + N FT A+ L   +
Sbjct: 146 DGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLA 205

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
                  G  +H++ VK G    + VS +L+ +Y KCG++  A  +F  + ++   +WN 
Sbjct: 206 EEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNS 265

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
           MI GY  +GL  +AL  F  M        E +F  V+  C+++
Sbjct: 266 MISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANL 308



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 121/240 (50%), Gaps = 3/240 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A +VF  + + ++V+W+A+L GYA++G+ +  + +F  +     K ++F+ S++L  
Sbjct: 444 VEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNV 503

Query: 61  -FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             A +  +  G+  H  AI+        +S +L+ MY+K G  ++A +VF R ++ D+V+
Sbjct: 504 CAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVS 563

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W ++I+   Q G   +A  +F  M++  VK +      +  A T  G    GE    ++ 
Sbjct: 564 WNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMV 623

Query: 180 KYGFESDTLVGNA-LVSMYMENGRVSYGSRVFEAIAHQ-DSVSWNALFSRFQDYESPDQG 237
           +    + T   N+ +V +Y   G++    +V E + +   S  W  + +  + ++  + G
Sbjct: 624 RDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELG 683


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 205/606 (33%), Positives = 327/606 (53%), Gaps = 5/606 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + LA++VF  +P  +  ++NAL+  Y+  G     + L+ SM       +K++   VLK 
Sbjct: 50  LALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKA 109

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    ++AG+ +HA A   G   D F+S +L+D+Y +C     A  VF ++   DVVAW
Sbjct: 110 CSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAW 169

Query: 121 GAIITCLDQQGCCQEA-AKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV-- 177
            A++      G    A A + ++     ++PN   L SL+    + G    G SIHA   
Sbjct: 170 NAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCL 229

Query: 178 -ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
             C    E   L+G AL+ MY +  ++ Y  RVF  +  ++ V+W+AL   F   +   +
Sbjct: 230 RACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTE 289

Query: 237 GLRIFYQMLLKGFKPNMCTFIV-ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
              +F  ML++G      T +   L+ C+SL+D+  G QLHA   K  +  +     SL+
Sbjct: 290 AFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLL 349

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
            MY K+G + +A + FD +A KD  +Y A+++   Q G+AE A   F+KM+   ++ +  
Sbjct: 350 SMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIA 409

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
           T+ S +  CS +A L +G+  H   +  G  L+  +  +L+ MYAKCG ID +  VF   
Sbjct: 410 TMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKM 469

Query: 416 ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
             RD  SWN MI GY  HGLG++A   F  M ++G+ PD++TF+ +++ACSH GL+ EGK
Sbjct: 470 PARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGK 529

Query: 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
             F ++   YGI P ++H+ CM+D+L R G   E   FI    L  +  VW  LLGAC  
Sbjct: 530 HWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRI 589

Query: 536 HGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCS 595
           H NI+L ++ +  + +L P+   N+V  S+I +  GR+++ + VR +   +G KK P  S
Sbjct: 590 HKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYS 649

Query: 596 WIEVDG 601
           WIE++G
Sbjct: 650 WIEING 655



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 161/352 (45%), Gaps = 7/352 (1%)

Query: 194 VSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
           +  ++  G+++   +VF+ I   D+ ++NAL   +         + ++  ML     PN 
Sbjct: 41  LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNK 100

Query: 254 CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
            TF  +LKACS+L D+  G+ +HAH     L  +  V T+L+D+Y +      A   F  
Sbjct: 101 YTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAK 160

Query: 314 LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE-GIKSNEFTLASCLNGCSPVATLAN 372
           +  +D+ A+ A++  YA  G    A+     M+   G++ N  TL S L   +    L  
Sbjct: 161 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQ 220

Query: 373 GRLLHSIAVKT---GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           G  +H+  ++     +   + + TAL+ MYAKC  +  A  VF G  +R+  +W+ +IGG
Sbjct: 221 GTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGG 280

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVV-VLSACSHMGLIEEGKKHFSSIKKIYGIT 488
           +V      +A   F+ ML EG      T V   L  C+ +  +  G +  + I K  GI 
Sbjct: 281 FVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAK-SGIH 339

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
             +     ++ +  +AG   E   F  E  +  + + +  LL  C  +G  E
Sbjct: 340 ADLTASNSLLSMYAKAGLINEATMFFDEIAVK-DTISYGALLSGCVQNGKAE 390


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 187/579 (32%), Positives = 313/579 (54%)

Query: 22  LLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLG 81
           ++ G+A+ GD       F  +     +   ++L  V++   +   ++ G+++H +  + G
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 82  CALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFN 141
             LD F+  +LVDMY KC   ++A  +F ++++ D+V W  +I    + G   E+  +F 
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 142 LMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENG 201
            MRE  V P++  + ++V A  + G       I   I +  F+ D ++G A++ MY + G
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCG 180

Query: 202 RVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILK 261
            V     +F+ +  ++ +SW+A+ + +  +    + L +F  ML  G  P+  T   +L 
Sbjct: 181 CVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLY 240

Query: 262 ACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFA 321
           ACS L ++  G+ +H    K  LD +H V  +LVDMY K   +EDA   FD +  +DL  
Sbjct: 241 ACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVT 300

Query: 322 YTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAV 381
           +T +I  YA+ G A  +L  F KMR EG+  ++  + + +  C+ +  +   R +     
Sbjct: 301 WTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQ 360

Query: 382 KTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALE 441
           +    LD+ + TA++ M+AKCG ++ A  +F     ++  SW+ MI  Y  HG G KAL+
Sbjct: 361 RKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALD 420

Query: 442 AFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDIL 501
            F MML  G +P++IT V +L ACSH GL+EEG + FS + + Y +   +KH+ C++D+L
Sbjct: 421 LFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLL 480

Query: 502 GRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYV 561
           GRAG+  E    I    +  +  +W   LGAC  H ++ L EK A  LLEL+P+   +Y+
Sbjct: 481 GRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYI 540

Query: 562 FPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
             S+I A  GRW D +  R L+S + +KK P  +WIEVD
Sbjct: 541 LLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVD 579



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 116/444 (26%), Positives = 225/444 (50%), Gaps = 5/444 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ +F  M E ++V+W  ++ GYAE G   + + LF  M++      K ++ TV+  
Sbjct: 81  IEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFA 140

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A  G +   +++     R    LD  L  +++DMY+KCG  ++A ++F R+++ +V++W
Sbjct: 141 CAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISW 200

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I      G  ++A  +F +M  S + P++  L SL+ A ++  + + G  IH ++ K
Sbjct: 201 SAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYK 260

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +G + D  V  ALV MY +   +     +F+ +  +D V+W  +   + +  + ++ L +
Sbjct: 261 FGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVL 320

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M  +G  P+    + ++ AC+ L  +   + +  +  +     + ++GT+++DM+ K
Sbjct: 321 FDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAK 380

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            GC+E A   FD +  K++ +++A+I +Y   G+   AL  F  M   GI  N+ TL S 
Sbjct: 381 CGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSL 440

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHL-LDMFVSTALVAMYAKCGSIDDAEAVFKGSAL-R 418
           L  CS    +  G    S+  +   +  D+   T +V +  + G +D+A  + +   + +
Sbjct: 441 LYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEK 500

Query: 419 DTASWNMMIGGYVKHG---LGEKA 439
           D   W   +G    H    L EKA
Sbjct: 501 DEGLWGAFLGACRTHKDVVLAEKA 524


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 197/604 (32%), Positives = 327/604 (54%), Gaps = 10/604 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKF-SLSTVLKGFA 62
           A +VF  MPE N+VSWN+++  ++E+G  +    L   M   E       ++ T+L   A
Sbjct: 200 AMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCA 259

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
             G +  G  +H +A++LG + +  ++ ++V MYSKCG  + A   F +  + +VV+W  
Sbjct: 260 GEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNT 319

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSV-----KPNQFVLTSLVRATTETGDQRCGESIHAV 177
           +I+    +G   EA   FNL++E  +     K N+  + +++ A  +    R  + +H  
Sbjct: 320 MISAFSLEGDVNEA---FNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGY 376

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
             ++ F+   L  NA +  Y + G ++   +VF  I  +   SWNAL         P + 
Sbjct: 377 SFRHCFQHVEL-SNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKA 435

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           L + +QM   G +P+  T   +L AC+ L  + +GK++H + +++ L+ +  VGTSL+  
Sbjct: 436 LHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSH 495

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y   G    A V FD + +K+L ++ A+I+ Y+Q G    +L  FRK   EGI+S+E  +
Sbjct: 496 YIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAI 555

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
            S    CS ++ L  G+  H   +K     D FV  +++ MYAK G I ++  VF G   
Sbjct: 556 VSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKD 615

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           ++ ASWN +I  +  HG G++A+E +  M   G +PD  T++ +L AC H GL+EEG K+
Sbjct: 616 KNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKY 675

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F  ++    I P ++H+AC+ID+L RAG+  +    + E     +  +W +LL +C   G
Sbjct: 676 FKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFG 735

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
            +E+ EK A+KLLELEP    NYV  S++ A  G+W+    VR ++   G++K+  CSWI
Sbjct: 736 ALEIGEKVAKKLLELEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWI 795

Query: 598 EVDG 601
           EV G
Sbjct: 796 EVGG 799



 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 163/613 (26%), Positives = 287/613 (46%), Gaps = 44/613 (7%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLKGFA 62
           ++ VF +M   N++ WNAL++GY  +G    V+ +F  +  D + +   F+  +V+K   
Sbjct: 98  SRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACG 157

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
               ++ G+V+H M I++G  LD F+  +LV MY KCG  D A+KVF  + + ++V+W +
Sbjct: 158 GILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNS 217

Query: 123 IITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           +I    + G  +++  +   ++ E  + P+   + +++      G+   G  IH +  K 
Sbjct: 218 MICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKL 277

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G   + +V NA+V MY + G ++     F    +++ VSWN + S F      ++   + 
Sbjct: 278 GLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLL 337

Query: 242 YQMLLKG--FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGTSLVDMY 298
            +M ++G   K N  T + +L AC     +   K+LH ++ +H     HV +  + +  Y
Sbjct: 338 QEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHCF--QHVELSNAFILAY 395

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G L  A   F  + +K + ++ A+I  +AQ G+   AL    +M   G + + FT++
Sbjct: 396 AKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTIS 455

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L  C+ + +L  G+ +H   ++ G   D FV T+L++ Y  CG    A  +F     +
Sbjct: 456 SLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDK 515

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           +  SWN MI GY ++GL  ++L  FR  L EG    EI  V V  ACS +  +  GK+  
Sbjct: 516 NLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAH 575

Query: 479 S---------------SIKKIYGITPTIKHFACMID------------------ILGRAG 505
                           SI  +Y  +  IK    + D                  I G   
Sbjct: 576 GYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGK 635

Query: 506 KFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE---KDAEKLLELEPKMESNYVF 562
           +  E+   + +    P+   +  +L AC   G +E      K+ +    +EPK+E +Y  
Sbjct: 636 EAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLE-HYAC 694

Query: 563 PSDISATQGRWND 575
             D+ A  GR +D
Sbjct: 695 LIDMLARAGRLDD 707



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 123/433 (28%), Positives = 224/433 (51%), Gaps = 8/433 (1%)

Query: 50  SKFSLSTVLKGFANSGYIKAGQVVHA-MAIRLGCALDKFLSCSLVDMYSKCGLADNALKV 108
           +K ++  +L+   N   I+ G+ +H  ++       D  L+  L+ MY+ CG   ++  V
Sbjct: 42  AKEAIGLLLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLV 101

Query: 109 FYRIKDPDVVAWGAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGD 167
           F  ++  +++ W A+++   + G   +  K+F +L+ ++  +P+ F   S+++A     D
Sbjct: 102 FDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILD 161

Query: 168 QRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR 227
            R GE IH ++ K G   D  VGNALV MY + G V    +VF+ +   + VSWN++   
Sbjct: 162 VRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICA 221

Query: 228 FQDYESPDQGLRIFYQML-LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDG 286
           F +         +  +ML  +G  P++ T + IL  C+   +V  G  +H   +K  L  
Sbjct: 222 FSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSE 281

Query: 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR 346
             +V  ++V MY K G L +A ++F    NK++ ++  +I++++  G+   A    ++M+
Sbjct: 282 EVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQ 341

Query: 347 LEG--IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF-VSTALVAMYAKCG 403
           ++G  +K+NE T+ + L  C     L + + LH  + +  H      +S A +  YAKCG
Sbjct: 342 IQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFR--HCFQHVELSNAFILAYAKCG 399

Query: 404 SIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           +++ AE VF G   +  +SWN +IGG+ ++G   KAL     M   G  PD  T   +L 
Sbjct: 400 ALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLL 459

Query: 464 ACSHMGLIEEGKK 476
           AC+H+  ++ GK+
Sbjct: 460 ACAHLKSLQYGKE 472



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 145/287 (50%), Gaps = 9/287 (3%)

Query: 258 VILKACSSLSDVGFGKQLHAHTIKHS-LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
           ++L+AC +  D+  G++LH      +    ++V+ T L+ MY   G   D+ + FD++  
Sbjct: 48  LLLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMET 107

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLE-GIKSNEFTLASCLNGCSPVATLANGRL 375
           K+L  + A+++ Y + G     +K F  +  +   + + FT  S +  C  +  +  G +
Sbjct: 108 KNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEV 167

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           +H + +K G +LD+FV  ALV MY KCG++D+A  VF      +  SWN MI  + ++G 
Sbjct: 168 IHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGF 227

Query: 436 GEKALEAFRMML-DEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKH 493
              + +    ML +EG +PD +T V +L  C+  G ++ G   H  ++K   G++  +  
Sbjct: 228 SRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVK--LGLSEEVMV 285

Query: 494 FACMIDILGRAGKFTEIE-NFITETKLTPNALVWENLLGACSWHGNI 539
              M+ +  + G   E + +F+       N + W  ++ A S  G++
Sbjct: 286 NNAMVYMYSKCGYLNEAQMSFVKNN--NKNVVSWNTMISAFSLEGDV 330


>gi|115459414|ref|NP_001053307.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|32482936|emb|CAE02340.1| OSJNBb0072M01.1 [Oryza sativa Japonica Group]
 gi|38345689|emb|CAD41109.2| OSJNBb0070J16.5 [Oryza sativa Japonica Group]
 gi|113564878|dbj|BAF15221.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|215768472|dbj|BAH00701.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218195211|gb|EEC77638.1| hypothetical protein OsI_16630 [Oryza sativa Indica Group]
          Length = 1027

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 204/599 (34%), Positives = 320/599 (53%), Gaps = 3/599 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AK VF    E N+V WNA+L G+ ++   ++ + +F  M     +  +F+  ++L     
Sbjct: 379 AKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTY 438

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G+ VH + I+    +  F++ + +DMYSK G   +A  +F  I   D ++W A+
Sbjct: 439 LSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNAL 498

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
              L Q    +EA  +   MR   + P+    ++ + A +       G+ IH +  KYG 
Sbjct: 499 TVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGI 558

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            S+  VG++L+ +Y ++G V    ++F  +     V  NAL + F    + D+ +++F Q
Sbjct: 559 CSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQ 618

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS-LDGNHVVGTSLVDMYDKSG 302
           +L  G KP+  TF  IL  CS   +   GKQ+H +T+K   L  + ++G SL  +Y KS 
Sbjct: 619 VLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSK 678

Query: 303 CLEDAGVAFDSLAN-KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
            LEDA      + + K+LF +TAII+ YAQ G  + +L  F +MR   ++S+E T AS L
Sbjct: 679 MLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVL 738

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG-SALRDT 420
             CS V   A+G+ +H +  K+G       ++AL+ MY+KCG +  +   FK     +D 
Sbjct: 739 KACSDVTAFADGKEIHGLITKSGFGSYETATSALIDMYSKCGDVISSFEAFKELKNKQDI 798

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
             WN MI G+ K+G  ++AL  F+ M +    PDE+TF+ VL AC+H GLI EG+  F S
Sbjct: 799 MPWNSMIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVLIACTHSGLISEGRHFFGS 858

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           ++K+YG+TP + H+AC ID+LGR G   E +  I +    P+ +VW   L AC  H + E
Sbjct: 859 MRKVYGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPDGVVWATYLAACRMHKDEE 918

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
             +  A KL+ELEP+  S YV  S + A  G W +    R  +  +G+ K P CSWI V
Sbjct: 919 RGKIAARKLVELEPQYSSTYVLLSSLHAATGNWAEAKVTRESMREKGVAKFPGCSWITV 977



 Score =  238 bits (608), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 155/570 (27%), Positives = 281/570 (49%), Gaps = 12/570 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  + K MP  + V+WNA+++G+A+SG    V+ L+  M+      ++ + +++L  
Sbjct: 275 LDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSA 334

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            AN      GQ +HA A+  G   + F+  SL+++Y+KCG   +A  VF    + ++V W
Sbjct: 335 AANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMW 394

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A++T   Q    +EA ++F  M   +++ ++F   S++ A T       G+ +H V  K
Sbjct: 395 NAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIK 454

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              +    V NA + MY + G +     +F  I ++DS+SWNAL          ++ + +
Sbjct: 455 NCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCM 514

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
             +M L G  P+  +F   + ACS++     GKQ+H   IK+ +  NH VG+SL+D+Y K
Sbjct: 515 LKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSK 574

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +E +   F  +    +    A+I  + Q    + A++ F+++  +G+K +  T +S 
Sbjct: 575 HGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSI 634

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLL-DMFVSTALVAMYAKCGSIDDAEAVF-KGSALR 418
           L+GCS     A G+ +H   +K+G L  D  +  +L  +Y K   ++DA  +  +    +
Sbjct: 635 LSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHK 694

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-H 477
           +   W  +I GY ++G G+ +L +F  M       DE TF  VL ACS +    +GK+ H
Sbjct: 695 NLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDVTAFADGKEIH 754

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
               K  +G   T    + +ID+  + G          E K   + + W +++   + +G
Sbjct: 755 GLITKSGFGSYETAT--SALIDMYSKCGDVISSFEAFKELKNKQDIMPWNSMIVGFAKNG 812

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDIS 567
                   A++ L L  KME   + P +++
Sbjct: 813 Y-------ADEALLLFQKMEELQIKPDEVT 835



 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 141/512 (27%), Positives = 248/512 (48%), Gaps = 43/512 (8%)

Query: 20  NALLNGYAESGDGQKVMHLFCSMK-DMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAI 78
           ++LL+ +A SG    V+  F  ++     +  +F L+ VL   +  G +  G+ VH   +
Sbjct: 126 SSLLSCHARSGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVV 185

Query: 79  RLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAK 138
           + G +   F   +LVDMY+KCG   NA +VF  I  PD + W ++I C  + GC QEA  
Sbjct: 186 KSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALA 245

Query: 139 IFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYM 198
           +F+ M +    P+Q  L +                                   ++S   
Sbjct: 246 LFSRMDKMGSAPDQVTLVT-----------------------------------IISTLA 270

Query: 199 ENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIV 258
            +GR+ + + + + +    +V+WNA+ S           L ++  M   G  P   TF  
Sbjct: 271 SSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFAS 330

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKD 318
           +L A +++     G+Q+HA  + H LD N  VG+SL+++Y K GC  DA   FD    K+
Sbjct: 331 MLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKN 390

Query: 319 LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHS 378
           +  + A++T + Q    E A++ F+ M    ++++EFT  S L  C+ +++   G+ +H 
Sbjct: 391 IVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHC 450

Query: 379 IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEK 438
           + +K    + +FV+ A + MY+K G+I DA+A+F     +D+ SWN +  G  ++   E+
Sbjct: 451 VTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQNLEEEE 510

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACM 497
           A+   + M   G  PD+++F   ++ACS++   E GK+ H  +IK  YGI       + +
Sbjct: 511 AVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIK--YGICSNHAVGSSL 568

Query: 498 IDILGRAGKFTEIENFITE---TKLTP-NALV 525
           ID+  + G          +   + + P NAL+
Sbjct: 569 IDLYSKHGDVESSRKIFAQVDASSIVPINALI 600



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/463 (26%), Positives = 223/463 (48%), Gaps = 35/463 (7%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+RVF  +   + + W++++  Y   G  Q+ + LF  M  M     + +L T++   A+
Sbjct: 212 ARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLAS 271

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           SG +                                   D+A  +  ++  P  VAW A+
Sbjct: 272 SGRL-----------------------------------DHATALLKKMPTPSTVAWNAV 296

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   Q G       ++  MR   + P +    S++ A         G+ +HA    +G 
Sbjct: 297 ISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGL 356

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           +++  VG++L+++Y + G  S    VF+    ++ V WNA+ + F   E P++ +R+F  
Sbjct: 357 DANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQY 416

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M+    + +  TF+ IL AC+ LS    GKQ+H  TIK+ +D +  V  + +DMY K G 
Sbjct: 417 MMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGA 476

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           + DA   F  +  KD  ++ A+    AQ  E E A+   ++MRL GI  ++ + ++ +N 
Sbjct: 477 IGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINA 536

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           CS +     G+ +H +A+K G   +  V ++L+ +Y+K G ++ +  +F           
Sbjct: 537 CSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPI 596

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
           N +I G+V++   ++A++ F+ +L +G  P  +TF  +LS CS
Sbjct: 597 NALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCS 639



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 130/522 (24%), Positives = 233/522 (44%), Gaps = 52/522 (9%)

Query: 71  QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
           + +H   +R G  L   L  SLV++Y K G    A        +    A  ++++C  + 
Sbjct: 76  RALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARS 135

Query: 131 GCCQEAAKIFNLMR-ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
           G   +    F  +R  +  +P+QF L  ++ A +  G    G  +H  + K GF S    
Sbjct: 136 GSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFC 195

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
             ALV MY + G V    RVF+ IA  D++ W+++ + +       + L +F +M   G 
Sbjct: 196 EAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGS 255

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
            P+  T + I+   +S                                   SG L+ A  
Sbjct: 256 APDQVTLVTIISTLAS-----------------------------------SGRLDHATA 280

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369
               +      A+ A+I+ +AQ+G     L  ++ MR  G+     T AS L+  + +  
Sbjct: 281 LLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKA 340

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
              G+ +H+ AV  G   ++FV ++L+ +YAKCG   DA+ VF  S  ++   WN M+ G
Sbjct: 341 FVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTG 400

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGIT 488
           +V++ L E+A+  F+ M+      DE TFV +L AC+++     GK+ H  +IK    I+
Sbjct: 401 FVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDIS 460

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTP--NALVWENLLGACSWHGNIELDEKDA 546
             + +    +D+  + G   + +   +   L P  +++ W  L    + +    L+E++A
Sbjct: 461 LFVAN--ATLDMYSKYGAIGDAKALFS---LIPYKDSISWNALTVGLAQN----LEEEEA 511

Query: 547 EKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGI 588
             +L+   +M  + + P D+S +    N  S +RA  + + I
Sbjct: 512 VCMLK---RMRLHGITPDDVSFSTA-INACSNIRATETGKQI 549



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 160/365 (43%), Gaps = 41/365 (11%)

Query: 168 QRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR 227
           Q C  ++H  I + G      +G++LV +Y ++GRV Y          + S + ++L S 
Sbjct: 73  QTC-RALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSC 131

Query: 228 FQDYESPDQGLRIF-YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDG 286
                SP   L  F Y     G +P+     V+L ACS +  + +G+Q+H   +K     
Sbjct: 132 HARSGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSS 191

Query: 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR 346
           +     +LVDMY K G + +A   FD +A  D   ++++I  Y + G  + AL  F +M 
Sbjct: 192 SVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMD 251

Query: 347 LEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSID 406
             G   ++ TL +                                   +++  A  G +D
Sbjct: 252 KMGSAPDQVTLVT-----------------------------------IISTLASSGRLD 276

Query: 407 DAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
            A A+ K      T +WN +I G+ + GL    L  ++ M   G  P   TF  +LSA +
Sbjct: 277 HATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAA 336

Query: 467 HMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV 525
           +M    EG++ H +++  ++G+   +   + +I++  + G  ++ +N + +     N ++
Sbjct: 337 NMKAFVEGQQMHAAAV--MHGLDANVFVGSSLINLYAKCGCPSDAKN-VFDLSCEKNIVM 393

Query: 526 WENLL 530
           W  +L
Sbjct: 394 WNAML 398


>gi|242055643|ref|XP_002456967.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
 gi|241928942|gb|EES02087.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
          Length = 785

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 186/605 (30%), Positives = 336/605 (55%), Gaps = 9/605 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLKGFA 62
           A R+   MP  N VS+N L++ Y+ +G   + +  F   +     +  +F+ +  L   +
Sbjct: 55  AARLIDEMPRRNAVSYNLLISSYSRAGLPGRALETFARARAAAGLRVDRFTYAAALAACS 114

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
            +  ++ G+ VHAM +  G     FLS SL  MY+ CG    A +VF   ++ D V+W +
Sbjct: 115 RALDLRTGKAVHAMTVLDGLGNGVFLSNSLASMYASCGEMGEARRVFDAAEEHDDVSWNS 174

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD--QRCGESIHAVICK 180
           +++   + G  +E  K+F+LM    +  N F L S+++      D  +   E++H  + K
Sbjct: 175 LLSGYVRAGAREETLKVFSLMCHHGLGWNSFALGSIIKCCASGSDVGRHIAEAVHGCVVK 234

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP------ 234
            G ++D  + +A++ MY + G ++    +F+++   + + +NA+ + F   E+       
Sbjct: 235 AGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVFNAMIAGFCRDEAAVGKEVS 294

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
            + L ++ +M  +G +P+  TF  IL+AC+   + GFGKQ+H   +KHS   +  +G++L
Sbjct: 295 REALSLYSEMQSRGMQPSEFTFSSILRACNLAGEFGFGKQIHGQVLKHSFHDDDYIGSAL 354

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           +D+Y  SGC+ED    F SL  +D+  +T++I+   Q    E AL+ F++    G+K + 
Sbjct: 355 IDLYSDSGCMEDGYRCFRSLPKQDIVTWTSMISGCVQNELFEKALRLFQESICYGLKPDL 414

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
           FT++S +N C+ +A    G  +  +A+K G      +  + + M A+ G +D     F+ 
Sbjct: 415 FTMSSVMNACASLAVARTGEQIQCLAIKYGFNRFTAMGNSFIHMCARSGDVDAVTRRFQE 474

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
              RD  SW+ +I  + +HG    AL  F  M++    P+E+TF+ VL+ACSH GL+++G
Sbjct: 475 MESRDVVSWSAVISSHAQHGCARDALRIFNEMMNAKVAPNEVTFLNVLTACSHGGLVDDG 534

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
            +++  +K  YG++PTIKH  C++D+LGRAG+  + E FI ++    +A+VW +LL +C 
Sbjct: 535 LRYYEIMKNEYGLSPTIKHVTCVVDLLGRAGRLADAEAFIRDSAFHDDAVVWRSLLASCR 594

Query: 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSC 594
            HG++E  +  A+++++LEP   ++YV   ++    G  +  S  R L+  +G+KKEP  
Sbjct: 595 IHGDMERGQLVADQIMDLEPTSSASYVILYNMYLDAGELSLASKTRDLMKERGVKKEPGL 654

Query: 595 SWIEV 599
           SWIE+
Sbjct: 655 SWIEL 659



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 127/262 (48%), Gaps = 4/262 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME   R F+S+P+ ++V+W ++++G  ++   +K + LF        K   F++S+V+  
Sbjct: 364 MEDGYRCFRSLPKQDIVTWTSMISGCVQNELFEKALRLFQESICYGLKPDLFTMSSVMNA 423

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+    + G+ +  +AI+ G      +  S + M ++ G  D   + F  ++  DVV+W
Sbjct: 424 CASLAVARTGEQIQCLAIKYGFNRFTAMGNSFIHMCARSGDVDAVTRRFQEMESRDVVSW 483

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI-C 179
            A+I+   Q GC ++A +IFN M  + V PN+    +++ A +  G    G   + ++  
Sbjct: 484 SAVISSHAQHGCARDALRIFNEMMNAKVAPNEVTFLNVLTACSHGGLVDDGLRYYEIMKN 543

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSR-VFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
           +YG          +V +    GR++     + ++  H D+V W +L +  + +   ++G 
Sbjct: 544 EYGLSPTIKHVTCVVDLLGRAGRLADAEAFIRDSAFHDDAVVWRSLLASCRIHGDMERGQ 603

Query: 239 RIFYQMLLKGFKPNMCTFIVIL 260
            +  Q++    +P      VIL
Sbjct: 604 LVADQIM--DLEPTSSASYVIL 623


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 205/606 (33%), Positives = 327/606 (53%), Gaps = 5/606 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + LA++VF  +P  +  ++NAL+  Y+  G     + L+ SM       +K++   VLK 
Sbjct: 50  LALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKA 109

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    ++AG+ +HA A   G   D F+S +L+D+Y +C     A  VF ++   DVVAW
Sbjct: 110 CSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAW 169

Query: 121 GAIITCLDQQGCCQEA-AKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV-- 177
            A++      G    A A + ++     ++PN   L SL+    + G    G SIHA   
Sbjct: 170 NAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCL 229

Query: 178 -ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
             C    E   L+G AL+ MY +  ++ Y  RVF  +  ++ V+W+AL   F   +   +
Sbjct: 230 RACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTE 289

Query: 237 GLRIFYQMLLKGFKPNMCTFIV-ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
              +F  ML++G      T +   L+ C+SL+D+  G QLHA   K  +  +     SL+
Sbjct: 290 AFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLL 349

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
            MY K+G + +A + FD +A KD  +Y A+++   Q G+AE A   F+KM+   ++ +  
Sbjct: 350 SMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIA 409

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
           T+ S +  CS +A L +G+  H   +  G  L+  +  +L+ MYAKCG ID +  VF   
Sbjct: 410 TMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKM 469

Query: 416 ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
             RD  SWN MI GY  HGLG++A   F  M ++G+ PD++TF+ +++ACSH GL+ EGK
Sbjct: 470 PARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGK 529

Query: 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
             F ++   YGI P ++H+ CM+D+L R G   E   FI    L  +  VW  LLGAC  
Sbjct: 530 HWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRI 589

Query: 536 HGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCS 595
           H NI+L ++ +  + +L P+   N+V  S+I +  GR+++ + VR +   +G KK P  S
Sbjct: 590 HKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYS 649

Query: 596 WIEVDG 601
           WIE++G
Sbjct: 650 WIEING 655



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 161/352 (45%), Gaps = 7/352 (1%)

Query: 194 VSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
           +  ++  G+++   +VF+ I   D+ ++NAL   +         + ++  ML     PN 
Sbjct: 41  LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNK 100

Query: 254 CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
            TF  +LKACS+L D+  G+ +HAH     L  +  V T+L+D+Y +      A   F  
Sbjct: 101 YTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAK 160

Query: 314 LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE-GIKSNEFTLASCLNGCSPVATLAN 372
           +  +D+ A+ A++  YA  G    A+     M+   G++ N  TL S L   +    L  
Sbjct: 161 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQ 220

Query: 373 GRLLHSIAVKT---GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           G  +H+  ++     +   + + TAL+ MYAKC  +  A  VF G  +R+  +W+ +IGG
Sbjct: 221 GTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGG 280

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVV-VLSACSHMGLIEEGKKHFSSIKKIYGIT 488
           +V      +A   F+ ML EG      T V   L  C+ +  +  G +  + I K  GI 
Sbjct: 281 FVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAK-SGIH 339

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
             +     ++ +  +AG   E   F  E  +  + + +  LL  C  +G  E
Sbjct: 340 ADLTASNSLLSMYAKAGLINEATMFFDEIAVK-DTISYGALLSGCVQNGKAE 390


>gi|356570738|ref|XP_003553542.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 777

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 198/598 (33%), Positives = 327/598 (54%), Gaps = 3/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++ F +M   +VVSW  +++GY+++G     + ++  M        + +  +++K    
Sbjct: 134 ARKAFDTMQLRSVVSWTIMISGYSQNGQENDAIIMYIQMLRSGYFPDQLTFGSIIKACCI 193

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +G I  G  +H   I+ G         +L+ MY+K G   +A  VF  I   D+++W ++
Sbjct: 194 AGDIDLGGQLHGHVIKSGYDHHLIAQNALISMYTKFGQIAHASDVFTMISTKDLISWASM 253

Query: 124 ITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           IT   Q G   EA  +F ++ R+   +PN+F+  S+  A         G  I  +  K+G
Sbjct: 254 ITGFTQLGYEIEALYLFRDMFRQGVYQPNEFIFGSVFSACRSLLKPEFGRQIQGMCAKFG 313

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
              +   G +L  MY + G +    R F  I   D VSWNA+ +   + +  ++ +  F 
Sbjct: 314 LGRNVFAGCSLCDMYAKFGFLPSAKRAFYQIESPDLVSWNAIIAALANSDV-NEAIYFFC 372

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           QM+  G  P+  TF+ +L AC S   +  G Q+H++ IK  LD    V  SL+ MY K  
Sbjct: 373 QMIHMGLMPDDITFLNLLCACGSPMTLNQGMQIHSYIIKMGLDKVAAVCNSLLTMYTKCS 432

Query: 303 CLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
            L DA   F  ++ N +L ++ AI+++ +Q  +   A + F+ M     K +  T+ + L
Sbjct: 433 NLHDAFNVFKDISENGNLVSWNAILSACSQHKQPGEAFRLFKLMLFSENKPDNITITTIL 492

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
             C+ + +L  G  +H  +VK+G ++D+ VS  L+ MYAKCG +  A  VF  +   D  
Sbjct: 493 GTCAELVSLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGLLKHARYVFDSTQNPDIV 552

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SW+ +I GY + GLG++AL  FRMM + G  P+E+T++ VLSACSH+GL+EEG   ++++
Sbjct: 553 SWSSLIVGYAQFGLGQEALNLFRMMRNLGVQPNEVTYLGVLSACSHIGLVEEGWHLYNTM 612

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
           +   GI PT +H +CM+D+L RAG   E ENFI +T   P+  +W+ LL +C  HGN+++
Sbjct: 613 EIELGIPPTREHVSCMVDLLARAGCLYEAENFIKKTGFDPDITMWKTLLASCKTHGNVDI 672

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            E+ AE +L+L+P   +  V  S+I A+ G W + + +R L+   G++K P  SWIEV
Sbjct: 673 AERAAENILKLDPSNSAALVLLSNIHASAGNWKEVARLRNLMKQMGVQKVPGQSWIEV 730



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 137/472 (29%), Positives = 227/472 (48%), Gaps = 7/472 (1%)

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
            N   +K G+ +H   ++  C  D  L   +++MY KCG   +A K F  ++   VV+W 
Sbjct: 91  TNVRSLKYGKRIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRSVVSWT 150

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            +I+   Q G   +A  ++  M  S   P+Q    S+++A    GD   G  +H  + K 
Sbjct: 151 IMISGYSQNGQENDAIIMYIQMLRSGYFPDQLTFGSIIKACCIAGDIDLGGQLHGHVIKS 210

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G++   +  NAL+SMY + G++++ S VF  I+ +D +SW ++ + F       + L +F
Sbjct: 211 GYDHHLIAQNALISMYTKFGQIAHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLF 270

Query: 242 YQMLLKG-FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
             M  +G ++PN   F  +  AC SL    FG+Q+     K  L  N   G SL DMY K
Sbjct: 271 RDMFRQGVYQPNEFIFGSVFSACRSLLKPEFGRQIQGMCAKFGLGRNVFAGCSLCDMYAK 330

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L  A  AF  + + DL ++ AII + A +   E A+  F +M   G+  ++ T  + 
Sbjct: 331 FGFLPSAKRAFYQIESPDLVSWNAIIAALANSDVNE-AIYFFCQMIHMGLMPDDITFLNL 389

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG-SALRD 419
           L  C    TL  G  +HS  +K G      V  +L+ MY KC ++ DA  VFK  S   +
Sbjct: 390 LCACGSPMTLNQGMQIHSYIIKMGLDKVAAVCNSLLTMYTKCSNLHDAFNVFKDISENGN 449

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HF 478
             SWN ++    +H    +A   F++ML     PD IT   +L  C+ +  +E G + H 
Sbjct: 450 LVSWNAILSACSQHKQPGEAFRLFKLMLFSENKPDNITITTILGTCAELVSLEVGNQVHC 509

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
            S+K   G+   +     +ID+  + G       ++ ++   P+ + W +L+
Sbjct: 510 FSVKS--GLVVDVSVSNRLIDMYAKCGLLKHAR-YVFDSTQNPDIVSWSSLI 558



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 193/415 (46%), Gaps = 4/415 (0%)

Query: 124 ITCLDQQGCCQEAAKIFNL-MRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I  + +Q   +EA   FN  ++ SS++       +L+ A T     + G+ IH  I K  
Sbjct: 51  INLMCKQQHYREALDTFNFHLKNSSIQLEPSTYVNLILACTNVRSLKYGKRIHDHILKSN 110

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            + D ++ N +++MY + G +    + F+ +  +  VSW  + S +      +  + ++ 
Sbjct: 111 CQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRSVVSWTIMISGYSQNGQENDAIIMYI 170

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           QML  G+ P+  TF  I+KAC    D+  G QLH H IK   D + +   +L+ MY K G
Sbjct: 171 QMLRSGYFPDQLTFGSIIKACCIAGDIDLGGQLHGHVIKSGYDHHLIAQNALISMYTKFG 230

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI-KSNEFTLASCL 361
            +  A   F  ++ KDL ++ ++IT + Q G    AL  FR M  +G+ + NEF   S  
Sbjct: 231 QIAHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGVYQPNEFIFGSVF 290

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           + C  +     GR +  +  K G   ++F   +L  MYAK G +  A+  F      D  
Sbjct: 291 SACRSLLKPEFGRQIQGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAKRAFYQIESPDLV 350

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SWN +I       + E A+  F  M+  G +PD+ITF+ +L AC     + +G +  S I
Sbjct: 351 SWNAIIAALANSDVNE-AIYFFCQMIHMGLMPDDITFLNLLCACGSPMTLNQGMQIHSYI 409

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
            K+ G+         ++ +  +     +  N   +     N + W  +L ACS H
Sbjct: 410 IKM-GLDKVAAVCNSLLTMYTKCSNLHDAFNVFKDISENGNLVSWNAILSACSQH 463


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 208/615 (33%), Positives = 319/615 (51%), Gaps = 19/615 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKV--MHLFCSMKDMEKKFSKFSLSTVLKGF 61
           A  +F  +P  +V ++N L+  Y+ S        +HL+  M       + ++    LK  
Sbjct: 76  AHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKAC 135

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           +       G+ +H  AI  G   D F+S +L+DMY KC    +A  +F  +   D+VAW 
Sbjct: 136 SALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWN 195

Query: 122 AIITCLDQQGCCQEA-AKIFNL-MRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           A++      G    A A + ++ M+   ++PN   L +L+    + G    G S+HA   
Sbjct: 196 AMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCI 255

Query: 180 KYGFESD----------TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
           +     +           L+G AL+ MY + G + Y  RVF+A+  ++ V+W+AL   F 
Sbjct: 256 RACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFV 315

Query: 230 DYESPDQGLRIFYQMLLKGF---KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDG 286
                 Q   +F  ML +G     P   +    L+AC+SL  +  G+QLHA   K  +  
Sbjct: 316 LCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACASLDHLRMGEQLHALLAKSGVHA 373

Query: 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR 346
           +   G SL+ MY K+G ++ A   FD +A KD  +Y+A+++ Y Q G AE A   F+KM+
Sbjct: 374 DLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQ 433

Query: 347 LEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSID 406
              ++ +  T+ S +  CS +A L +GR  H   +  G   +  +  AL+ MYAKCG ID
Sbjct: 434 ACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRID 493

Query: 407 DAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
            +  VF     RD  SWN MI GY  HGLG++A   F  M + G+ PD +TF+ +LSACS
Sbjct: 494 LSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACS 553

Query: 467 HMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVW 526
           H GL+ EGK  F  +   YG+TP ++H+ CM+D+L R G   E   FI    L  +  VW
Sbjct: 554 HSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVW 613

Query: 527 ENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQ 586
             LLGAC  + NI+L +K +  + EL P+   N+V  S+I +  GR+++ + VR +   Q
Sbjct: 614 VALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQ 673

Query: 587 GIKKEPSCSWIEVDG 601
           G KK P CSWIE++G
Sbjct: 674 GFKKSPGCSWIEING 688



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 109/242 (45%), Gaps = 2/242 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  +F  M   + VS++AL++GY ++G  ++   +F  M+    +    ++ +++  
Sbjct: 391 IDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPA 450

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ++   ++ G+  H   I  G A +  +  +L+DMY+KCG  D + +VF  +   D+V+W
Sbjct: 451 CSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSW 510

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES-IHAVIC 179
             +I      G  +EA  +F  M      P+      L+ A + +G    G+   H +  
Sbjct: 511 NTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGH 570

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS-WNALFSRFQDYESPDQGL 238
            YG          +V +    G +       +++  +  V  W AL    + Y++ D G 
Sbjct: 571 GYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGK 630

Query: 239 RI 240
           ++
Sbjct: 631 KV 632


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 191/597 (31%), Positives = 334/597 (55%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF  M E + V WN +++GY ++GD    + LF  M+      +  +L+  L   A 
Sbjct: 201 AREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAA 260

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              + +G  +H +A++ G   +  ++ +LV MY+KC   + A ++F  +   D+V W  +
Sbjct: 261 EADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGM 320

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   Q G   +A ++F  M++S ++P+   L SL+ A TE    + G+ IH  I +   
Sbjct: 321 ISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCA 380

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D  + +ALV +Y +   V     VF+A    D V  + + S +      +  +++F  
Sbjct: 381 HVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRY 440

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           +L  G KPN       L AC+S++ +  G++LH + +K++ +G   V ++L+DMY K G 
Sbjct: 441 LLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYEGRCYVESALMDMYSKCGR 500

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L+ +   F  ++ KD   + ++I+S+AQ GE E AL  FR+M +EG+K N  T++S L+ 
Sbjct: 501 LDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSA 560

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +  +  G+ +H I +K     D+F  +AL+ MY KCG+++ A  VF+    ++  SW
Sbjct: 561 CAGLPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKCGNLELALRVFEHMPEKNEVSW 620

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I  Y  HGL +++++    M +EG+  D +TF+ ++SAC+H G ++EG + F  + +
Sbjct: 621 NSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLALISACAHAGQVQEGLRLFRCMTE 680

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            Y I P ++H +CM+D+  RAGK  +   FI +    P+A +W  LL AC  H N+EL E
Sbjct: 681 EYHIEPQVEHLSCMVDLYSRAGKLDKAMQFIADMPFKPDAGIWGALLHACRVHRNVELAE 740

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
             +++L +L+P     YV  S+I+A  GRW+  S +R L+  + ++K P  SW++V+
Sbjct: 741 IASQELFKLDPHNCGYYVLMSNINAVAGRWDGVSKMRRLMKDKKVQKIPGYSWVDVN 797



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 153/542 (28%), Positives = 259/542 (47%), Gaps = 7/542 (1%)

Query: 4   AKRVFKSMPELNV---VSWNALLNGYAESGDGQKVMHLFCSM--KDMEKKFSKFSLSTVL 58
           A  VF S+P       + WN L+ G+  +G  +  +  +  M       +    +L  V+
Sbjct: 95  AVAVFSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVV 154

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
           K  A  G +  G++VH     LG   D ++  +L+ MY+  GL D A +VF  + + D V
Sbjct: 155 KSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCV 214

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            W  ++    + G    A  +F +MR S   PN   L   +       D   G  +H + 
Sbjct: 215 LWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQLHTLA 274

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            KYG E +  V N LVSMY +   +    R+F  +   D V+WN + S        D  L
Sbjct: 275 VKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDAL 334

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           R+F  M   G +P+  T   +L A + L+    GK++H + +++    +  + ++LVD+Y
Sbjct: 335 RLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIY 394

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K   +  A   FD+  + D+   + +I+ Y     +E A+K FR +   GIK N   +A
Sbjct: 395 FKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVA 454

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L  C+ +A +  G+ LH   +K  +    +V +AL+ MY+KCG +D +  +F   + +
Sbjct: 455 STLPACASMAAMRIGQELHGYVLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAK 514

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D  +WN MI  + ++G  E+AL+ FR M+ EG   + +T   +LSAC+ +  I  GK+  
Sbjct: 515 DEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSACAGLPAIYYGKEIH 574

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
             I K   I   +   + +ID+ G+ G   E+   + E     N + W +++ A   HG 
Sbjct: 575 GIIIK-GPIRADLFAESALIDMYGKCGNL-ELALRVFEHMPEKNEVSWNSIISAYGAHGL 632

Query: 539 IE 540
           ++
Sbjct: 633 VK 634



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/409 (27%), Positives = 203/409 (49%), Gaps = 1/409 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A R+F  MP  ++V+WN +++G  ++G     + LFC M+    +    +L+++L  
Sbjct: 299 LEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPA 358

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                  K G+ +H   +R    +D FL  +LVD+Y KC     A  VF   K  DVV  
Sbjct: 359 LTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIG 418

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+        + A K+F  +    +KPN  ++ S + A       R G+ +H  + K
Sbjct: 419 STMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLK 478

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             +E    V +AL+ MY + GR+     +F  ++ +D V+WN++ S F     P++ L +
Sbjct: 479 NAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDL 538

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QM+++G K N  T   IL AC+ L  + +GK++H   IK  +  +    ++L+DMY K
Sbjct: 539 FRQMIMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGK 598

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G LE A   F+ +  K+  ++ +II++Y   G  + ++     M+ EG K++  T  + 
Sbjct: 599 CGNLELALRVFEHMPEKNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLAL 658

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVS-TALVAMYAKCGSIDDA 408
           ++ C+    +  G  L     +  H+       + +V +Y++ G +D A
Sbjct: 659 ISACAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMVDLYSRAGKLDKA 707



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 129/303 (42%), Gaps = 18/303 (5%)

Query: 251 PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL-----DGNHVVGTSLVDMYDKSGCLE 305
           P     + +L+ C + S +  G ++HA  +   L      G   + T LV MY  +    
Sbjct: 34  PCAYRLLALLRGCVAPSHLPLGLRIHARAVTSGLLDAAGPGPAALQTRLVGMYVLARRFR 93

Query: 306 DAGVAFDSLAN---KDLFAYTAIITSYAQAGEAEMALKCFRKM--RLEGIKSNEFTLASC 360
           DA   F SL          +  +I  +  AG   +A+  + KM       + +  TL   
Sbjct: 94  DAVAVFSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYV 153

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           +  C+ +  L  GRL+H      G   DM+V +AL+ MYA  G +D A  VF G   RD 
Sbjct: 154 VKSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDC 213

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC-SHMGLIEEGKKHFS 479
             WN+M+ GYVK G    A+  FR+M   G  P+  T    LS C +   L+   + H  
Sbjct: 214 VLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQLHTL 273

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTP--NALVWENLLGACSWHG 537
           ++K  YG+ P +     ++ +  +     E         L P  + + W  ++  C  +G
Sbjct: 274 AVK--YGLEPEVAVANTLVSMYAKCQCLEEAWRLFG---LMPRDDLVTWNGMISGCVQNG 328

Query: 538 NIE 540
            ++
Sbjct: 329 LVD 331


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 188/597 (31%), Positives = 336/597 (56%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+  F  +PE + V WN +++G  ++GD    + LF +M+    + +  +L+  L   A 
Sbjct: 195 ARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCAT 254

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              + +G  +H++A++ G   +  ++ +L+ MY+KC   D+A ++F  +   D+V W  +
Sbjct: 255 DADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGM 314

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   Q G   EA  +F  M+ S  +P+   L SL+ A T+    + G+ +H  I +   
Sbjct: 315 ISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCV 374

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D  + +ALV +Y +   V     +++A    D V  + + S +      ++ L++F  
Sbjct: 375 NMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRY 434

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           +L +  KPN  T   +L  C+S++ +  G+Q+H + ++++ +    V ++L+DMY K G 
Sbjct: 435 LLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGR 494

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L+ +   F  ++ KD   + ++I+S++Q G+ + AL  FR+M +EGIK N  T+++ L+ 
Sbjct: 495 LDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSA 554

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +  +  G+ +H + +K     D+F  +AL+ MYAKCG+++ A  VF+    ++  SW
Sbjct: 555 CASLPAIYYGKEIHGVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMPDKNEVSW 614

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I  Y  HGL ++++     M +EGY PD +TF+ ++SAC+H GL+EEG + F  + K
Sbjct: 615 NSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISACAHAGLVEEGVQLFQCMTK 674

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            Y I P ++HFACM+D+  R+GK  +   FI +    P+A +W  LL AC  H N+EL +
Sbjct: 675 KYLIAPRMEHFACMVDLYSRSGKLDKAIQFIADMPFKPDAGIWGALLHACRVHRNVELAD 734

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
             +++L +L+P     YV  S+I+A  GRW+  S VR L+    I K P  SW++V+
Sbjct: 735 IASQELFKLDPANSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYSWVDVN 791



 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 154/543 (28%), Positives = 264/543 (48%), Gaps = 9/543 (1%)

Query: 4   AKRVFKSMPELNVVS---WNALLNGYAESGDGQKVMHLFCSMKDMEKKFSK--FSLSTVL 58
           A  VF ++P     S   WN L+ G+  +G     +  +  M       S    +L  V+
Sbjct: 89  AVAVFSALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVV 148

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
           K  A  G +  G++VH  A  +G A D ++  +LV MY+  GL  NA   F  I + D V
Sbjct: 149 KSCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCV 208

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            W  ++    + G    A ++F  MR S  +PN   L   +       D   G  +H++ 
Sbjct: 209 LWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLA 268

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K G E +  V N L++MY +   +    R+FE +   D V+WN + S         +  
Sbjct: 269 VKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAF 328

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            +FY M   G +P+  T + +L A + L+ +  GK++H + +++ ++ +  + ++LVD+Y
Sbjct: 329 GLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIY 388

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K   +  A   +D+    D+   + +I+ Y   G +E AL+ FR +  + IK N  T+A
Sbjct: 389 FKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIA 448

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L GC+ +A L  G+ +H   ++  +    +V +AL+ MYAKCG +D +  +F   + +
Sbjct: 449 SVLPGCASMAALPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQK 508

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-H 477
           D  +WN MI  + ++G  ++AL+ FR M  EG   + IT    LSAC+ +  I  GK+ H
Sbjct: 509 DEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIH 568

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
             +IK    I   I   + +ID+  + G   E+   + E     N + W +++ A   HG
Sbjct: 569 GVTIKG--PIKADIFAESALIDMYAKCGNL-ELALRVFEFMPDKNEVSWNSIISAYGAHG 625

Query: 538 NIE 540
            ++
Sbjct: 626 LVK 628



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 126/496 (25%), Positives = 225/496 (45%), Gaps = 12/496 (2%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDK---FLSCSLVDMYSKCGLADNALKVFY 110
           L  VL+G  ++ ++  G  +HA A+  G   D     L   L+ MY       +A+ VF 
Sbjct: 35  LLAVLRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAVFS 94

Query: 111 ---RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLM--RESSVKPNQFVLTSLVRATTET 165
              R      + W  +I      G    A   +  M    ++  P+   L  +V++    
Sbjct: 95  ALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAAL 154

Query: 166 GDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALF 225
           G    G  +H      G  +D  VG+ALV MY + G +      F+ I  +D V WN + 
Sbjct: 155 GAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMM 214

Query: 226 SRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLD 285
                    D  +R+F  M   G +PN  T    L  C++ +D+  G QLH+  +K  L+
Sbjct: 215 DGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLE 274

Query: 286 GNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM 345
               V  +L+ MY K  CL+DA   F+ +   DL  +  +I+   Q G    A   F  M
Sbjct: 275 PEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDM 334

Query: 346 RLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSI 405
           +  G + +  TL S L   + +  L  G+ +H   V+    +D+F+ +ALV +Y KC  +
Sbjct: 335 QRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDV 394

Query: 406 DDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC 465
             A+ ++  +   D    + MI GYV +G+ E+AL+ FR +L++   P+ +T   VL  C
Sbjct: 395 RMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGC 454

Query: 466 SHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNAL 524
           + M  +  G++ H   ++  Y     ++  + ++D+  + G+  ++ ++I       + +
Sbjct: 455 ASMAALPLGQQIHGYVLRNAYERKCYVE--SALMDMYAKCGRL-DLSHYIFLKMSQKDEV 511

Query: 525 VWENLLGACSWHGNIE 540
            W +++ + S +G  +
Sbjct: 512 TWNSMISSFSQNGKPQ 527



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 157/308 (50%), Gaps = 1/308 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + +A+ ++ +   ++VV  + +++GY  +G  ++ + +F  + +   K +  ++++VL G
Sbjct: 394 VRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPG 453

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+   +  GQ +H   +R       ++  +L+DMY+KCG  D +  +F ++   D V W
Sbjct: 454 CASMAALPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTW 513

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I+   Q G  QEA  +F  M    +K N   +++ + A         G+ IH V  K
Sbjct: 514 NSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGVTIK 573

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              ++D    +AL+ MY + G +    RVFE +  ++ VSWN++ S +  +    + + +
Sbjct: 574 GPIKADIFAESALIDMYAKCGNLELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSL 633

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL-HAHTIKHSLDGNHVVGTSLVDMYD 299
            + M  +G+KP+  TF+ ++ AC+    V  G QL    T K+ +         +VD+Y 
Sbjct: 634 LHGMQEEGYKPDHVTFLALISACAHAGLVEEGVQLFQCMTKKYLIAPRMEHFACMVDLYS 693

Query: 300 KSGCLEDA 307
           +SG L+ A
Sbjct: 694 RSGKLDKA 701


>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 928

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 193/600 (32%), Positives = 322/600 (53%), Gaps = 1/600 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  +F  M E + +SWN++   YA++G  ++   +F  M+    + +  ++ST+L  
Sbjct: 194 VDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSV 253

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +  + K G+ +H + +++G      +  +L+ MY+  G +  A  VF ++   D+++W
Sbjct: 254 LGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISW 313

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +++      G   +A  +   M  S    N    TS + A         G  +H ++  
Sbjct: 314 NSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVV 373

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G   + ++GNALVSMY + G +S   RV   +  +D V+WNAL   + + E PD+ L  
Sbjct: 374 SGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAA 433

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDV-GFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           F  M ++G   N  T + +L AC    D+   GK LHA+ +    + +  V  SL+ MY 
Sbjct: 434 FQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYA 493

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G L  +   F+ L N+++  + A++ + A  G  E  LK   KMR  G+  ++F+ + 
Sbjct: 494 KCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSE 553

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L+  + +A L  G+ LH +AVK G   D F+  A   MY+KCG I +   +   S  R 
Sbjct: 554 GLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRS 613

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SWN++I    +HG  E+    F  ML+ G  P  +TFV +L+ACSH GL+++G  ++ 
Sbjct: 614 LPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYD 673

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
            I + +G+ P I+H  C+ID+LGR+G+  E E FI++  + PN LVW +LL +C  HGN+
Sbjct: 674 MIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNL 733

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +   K AE L +LEP+ +S YV  S++ AT GRW D   VR  +  + IKK+ +CSW+++
Sbjct: 734 DRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKL 793



 Score =  245 bits (625), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 163/573 (28%), Positives = 281/573 (49%), Gaps = 41/573 (7%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           +++VF+ MP+ NVVSW +L+ GY++ G+ ++V+ ++  M+      ++ S+S V+   ++
Sbjct: 96  SRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVI---SS 152

Query: 64  SGYIK---AGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            G +K    G+ +    ++ G      +  SL+ M    G  D A  +F ++ + D ++W
Sbjct: 153 CGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISW 212

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +I     Q G  +E+ +IF+LMR    + N   +++L+        Q+ G  IH ++ K
Sbjct: 213 NSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVK 272

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GF+S   V N L+ MY   GR    + VF+ +  +D +SWN+L + F +       L +
Sbjct: 273 MGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGL 332

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
              M+  G   N  TF   L AC +      G+ LH   +   L  N ++G +LV MY K
Sbjct: 333 LCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGK 392

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G + ++      +  +D+ A+ A+I  YA+  + + AL  F+ MR+EG+ SN  T+ S 
Sbjct: 393 IGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSV 452

Query: 361 LNGC-SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
           L+ C  P   L  G+ LH+  V  G   D  V  +L+ MYAKCG +  ++ +F G   R+
Sbjct: 453 LSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRN 512

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-H- 477
             +WN M+     HG GE+ L+    M   G   D+ +F   LSA + + ++EEG++ H 
Sbjct: 513 IITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHG 572

Query: 478 -------------FSSIKKIYG-----------ITPTIKH----FACMIDILGRAGKFTE 509
                        F++   +Y            + P++      +  +I  LGR G F E
Sbjct: 573 LAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEE 632

Query: 510 I-ENF--ITETKLTPNALVWENLLGACSWHGNI 539
           +   F  + E  + P  + + +LL ACS HG +
Sbjct: 633 VCATFHEMLEMGIKPGHVTFVSLLTACS-HGGL 664



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 155/564 (27%), Positives = 263/564 (46%), Gaps = 13/564 (2%)

Query: 11  MPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYI-KA 69
           MP  N VSWN +++G    G   + M  F  M D+  K S F +++++     SG + + 
Sbjct: 1   MPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFRE 60

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
           G  VH    + G   D ++S +++ +Y   GL   + KVF  + D +VV+W +++     
Sbjct: 61  GVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSD 120

Query: 130 QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
           +G  +E   I+  MR   V  N+  ++ ++ +     D+  G  I   + K G ES   V
Sbjct: 121 KGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAV 180

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
            N+L+SM    G V Y + +F+ ++ +D++SWN++ + +      ++  RIF  M     
Sbjct: 181 ENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHD 240

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
           + N  T   +L     +    +G+ +H   +K   D    V  +L+ MY  +G   +A +
Sbjct: 241 EVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANL 300

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369
            F  +  KDL ++ +++ S+   G +  AL     M   G   N  T  S L  C     
Sbjct: 301 VFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDF 360

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
              GR+LH + V +G   +  +  ALV+MY K G + ++  V      RD  +WN +IGG
Sbjct: 361 FEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGG 420

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG-LIEEGKK-HFSSIKKIYGI 487
           Y +    +KAL AF+ M  EG   + IT V VLSAC   G L+E GK  H   +   +  
Sbjct: 421 YAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFES 480

Query: 488 TPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAE 547
              +K+   +I +  + G  +  ++         N + W  +L A + HG+        E
Sbjct: 481 DEHVKN--SLITMYAKCGDLSSSQDLFNGLD-NRNIITWNAMLAANAHHGH-------GE 530

Query: 548 KLLELEPKMESNYVFPSDISATQG 571
           ++L+L  KM S  V     S ++G
Sbjct: 531 EVLKLVSKMRSFGVSLDQFSFSEG 554


>gi|242076488|ref|XP_002448180.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
 gi|241939363|gb|EES12508.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
          Length = 1029

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 200/599 (33%), Positives = 321/599 (53%), Gaps = 3/599 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AK+VF    E N+V WNA+L G+ ++   ++ + +F  M+  + +   F+  +VL    N
Sbjct: 381 AKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLEADDFTFVSVLGACIN 440

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G+ VH + I+     D F++ +++DMYSK G  D A  +F  I   D V+W A+
Sbjct: 441 LDSLDIGRQVHCITIKNSMDADLFVANAMLDMYSKLGAIDVAKALFSLIPGKDSVSWNAL 500

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I  L      +EA  +   M+   + P++    + + A +       G+ IH    KY  
Sbjct: 501 IVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINACSNIRATETGKQIHCASIKYNV 560

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            S+  VG++L+ +Y + G V    +V   +     V  NAL +        D+ + +F Q
Sbjct: 561 CSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSMVPINALITGLVQNNREDEAIELFQQ 620

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL-DGNHVVGTSLVDMYDKSG 302
           +L  GFKP+  TF  IL  C+       GKQ+H++T+K +L + +  +G SLV +Y K  
Sbjct: 621 VLKDGFKPSNFTFASILSGCTGPVSSVIGKQVHSYTLKSALLNQDTSLGISLVGIYLKCK 680

Query: 303 CLEDAGVAFDSLAN-KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
            LEDA      + + K+L  +TA I+ YAQ G ++ +L  F +MR   ++S+E T AS L
Sbjct: 681 LLEDANKLLAEVPDHKNLVEWTATISGYAQNGYSDQSLVMFWRMRSHDVRSDEATFASVL 740

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG-SALRDT 420
             CS +A L +G+ +H + +K+G +     ++AL+ MY+KCG +  +  +FK     ++ 
Sbjct: 741 KACSEIAALTDGKEIHGLIIKSGFVSYETAASALMDMYSKCGDVISSFEIFKELKNKQNI 800

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
             WN MI G+ K+G   +AL  F+ M +    PDE+T + VL ACSH GLI EG+  F S
Sbjct: 801 MPWNSMIVGFAKNGYANEALLLFQKMQESQLKPDEVTLLGVLIACSHAGLISEGRNLFDS 860

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + ++YGI P + H+AC+ID+LGR G   E +  I +     + ++W   L AC  H + E
Sbjct: 861 MSQVYGIVPRVDHYACLIDLLGRGGHLQEAQEVIDQLPFRADGVIWATFLAACQMHKDEE 920

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
             +  A+KL+E+EP+  S YVF S + A  G W +    R  +  +G+ K P CSWI V
Sbjct: 921 RGKVAAKKLVEMEPQRSSTYVFLSSLHAAAGNWVEAKVAREAMREKGVMKFPGCSWITV 979



 Score =  240 bits (613), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 150/566 (26%), Positives = 276/566 (48%), Gaps = 10/566 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ + K +   + V+WNA+++ Y++SG   +V  L+  MK      ++ + +++L   A+
Sbjct: 280 ARTLLKRIQMPSTVAWNAVISSYSQSGLESEVFGLYKDMKRQGLMPTRSTFASMLSAAAS 339

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 GQ +HA A++ G   + F+  SL+++Y K G   +A KVF    + ++V W A+
Sbjct: 340 MTAFDEGQQIHAAAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAM 399

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    Q    +E  ++F  MR + ++ + F   S++ A         G  +H +  K   
Sbjct: 400 LYGFVQNDLQEETIQMFQYMRRADLEADDFTFVSVLGACINLDSLDIGRQVHCITIKNSM 459

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           ++D  V NA++ MY + G +     +F  I  +DSVSWNAL       E  ++ + +  +
Sbjct: 460 DADLFVANAMLDMYSKLGAIDVAKALFSLIPGKDSVSWNALIVGLAHNEEEEEAVYMLKR 519

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G  P+  +F   + ACS++     GKQ+H  +IK+++  NH VG+SL+D+Y K G 
Sbjct: 520 MKCYGIAPDEVSFATAINACSNIRATETGKQIHCASIKYNVCSNHAVGSSLIDLYSKFGD 579

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +E +      +    +    A+IT   Q    + A++ F+++  +G K + FT AS L+G
Sbjct: 580 VESSRKVLAHVDASSMVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFASILSG 639

Query: 364 CSPVATLANGRLLHSIAVKTGHL-LDMFVSTALVAMYAKCGSIDDAEAVF-KGSALRDTA 421
           C+   +   G+ +HS  +K+  L  D  +  +LV +Y KC  ++DA  +  +    ++  
Sbjct: 640 CTGPVSSVIGKQVHSYTLKSALLNQDTSLGISLVGIYLKCKLLEDANKLLAEVPDHKNLV 699

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
            W   I GY ++G  +++L  F  M       DE TF  VL ACS +  + +GK+    I
Sbjct: 700 EWTATISGYAQNGYSDQSLVMFWRMRSHDVRSDEATFASVLKACSEIAALTDGKEIHGLI 759

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
            K  G        + ++D+  + G          E K   N + W +++   + +G    
Sbjct: 760 IK-SGFVSYETAASALMDMYSKCGDVISSFEIFKELKNKQNIMPWNSMIVGFAKNGY--- 815

Query: 542 DEKDAEKLLELEPKMESNYVFPSDIS 567
               A + L L  KM+ + + P +++
Sbjct: 816 ----ANEALLLFQKMQESQLKPDEVT 837



 Score =  218 bits (554), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 144/513 (28%), Positives = 251/513 (48%), Gaps = 49/513 (9%)

Query: 22  LLNGYAESGDGQKVMHLFCSMK-DMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRL 80
           +L+ +A SG  + V+  F  ++  +     +F L+ VL   +  G ++ G+ VH   ++ 
Sbjct: 130 VLSCHARSGSPRDVLDAFQRLRCSIGGTPDQFGLAVVLSACSRLGALEQGRQVHCDVLKS 189

Query: 81  GCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIF 140
           G     F    LVDMY+KC    +A +VF  I  PD + W ++I    + G  Q+A  +F
Sbjct: 190 GFCSSAFCQAGLVDMYAKCVEVKDARRVFDGIACPDTICWASMIAGYHRVGRYQQALALF 249

Query: 141 NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMEN 200
           + M +    P+Q    +++                               + L SM    
Sbjct: 250 SRMEKMGSAPDQVTYVTII-------------------------------STLASM---- 274

Query: 201 GRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVIL 260
           GR+S    + + I    +V+WNA+ S +       +   ++  M  +G  P   TF  +L
Sbjct: 275 GRLSDARTLLKRIQMPSTVAWNAVISSYSQSGLESEVFGLYKDMKRQGLMPTRSTFASML 334

Query: 261 KACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLF 320
            A +S++    G+Q+HA  +KH LD N  VG+SL+++Y K GC+ DA   FD    K++ 
Sbjct: 335 SAAASMTAFDEGQQIHAAAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIV 394

Query: 321 AYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIA 380
            + A++  + Q    E  ++ F+ MR   +++++FT  S L  C  + +L  GR +H I 
Sbjct: 395 MWNAMLYGFVQNDLQEETIQMFQYMRRADLEADDFTFVSVLGACINLDSLDIGRQVHCIT 454

Query: 381 VKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKAL 440
           +K     D+FV+ A++ MY+K G+ID A+A+F     +D+ SWN +I G   +   E+A+
Sbjct: 455 IKNSMDADLFVANAMLDMYSKLGAIDVAKALFSLIPGKDSVSWNALIVGLAHNEEEEEAV 514

Query: 441 EAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMID 499
              + M   G  PDE++F   ++ACS++   E GK+ H +SIK  Y +       + +ID
Sbjct: 515 YMLKRMKCYGIAPDEVSFATAINACSNIRATETGKQIHCASIK--YNVCSNHAVGSSLID 572

Query: 500 ILGRAGKFTEIEN------FITETKLTP-NALV 525
           +     KF ++E+       +  + + P NAL+
Sbjct: 573 LY---SKFGDVESSRKVLAHVDASSMVPINALI 602



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 116/463 (25%), Positives = 222/463 (47%), Gaps = 35/463 (7%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+RVF  +   + + W +++ GY   G  Q+ + LF  M+ M                  
Sbjct: 214 ARRVFDGIACPDTICWASMIAGYHRVGRYQQALALFSRMEKM------------------ 255

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                            G A D+    +++   +  G   +A  +  RI+ P  VAW A+
Sbjct: 256 -----------------GSAPDQVTYVTIISTLASMGRLSDARTLLKRIQMPSTVAWNAV 298

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   Q G   E   ++  M+   + P +    S++ A         G+ IHA   K+G 
Sbjct: 299 ISSYSQSGLESEVFGLYKDMKRQGLMPTRSTFASMLSAAASMTAFDEGQQIHAAAVKHGL 358

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           +++  VG++L+++Y+++G +S   +VF+    ++ V WNA+   F   +  ++ +++F  
Sbjct: 359 DANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQY 418

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M     + +  TF+ +L AC +L  +  G+Q+H  TIK+S+D +  V  +++DMY K G 
Sbjct: 419 MRRADLEADDFTFVSVLGACINLDSLDIGRQVHCITIKNSMDADLFVANAMLDMYSKLGA 478

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++ A   F  +  KD  ++ A+I   A   E E A+   ++M+  GI  +E + A+ +N 
Sbjct: 479 IDVAKALFSLIPGKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINA 538

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           CS +     G+ +H  ++K     +  V ++L+ +Y+K G ++ +  V            
Sbjct: 539 CSNIRATETGKQIHCASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSMVPI 598

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
           N +I G V++   ++A+E F+ +L +G+ P   TF  +LS C+
Sbjct: 599 NALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFASILSGCT 641



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 116/453 (25%), Positives = 216/453 (47%), Gaps = 5/453 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +++AK +F  +P  + VSWNAL+ G A + + ++ +++   MK       + S +T +  
Sbjct: 479 IDVAKALFSLIPGKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINA 538

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +N    + G+ +H  +I+     +  +  SL+D+YSK G  +++ KV   +    +V  
Sbjct: 539 CSNIRATETGKQIHCASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSMVPI 598

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+IT L Q     EA ++F  + +   KP+ F   S++   T       G+ +H+   K
Sbjct: 599 NALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFASILSGCTGPVSSVIGKQVHSYTLK 658

Query: 181 YG-FESDTLVGNALVSMYMENGRVSYGSRVF-EAIAHQDSVSWNALFSRFQDYESPDQGL 238
                 DT +G +LV +Y++   +   +++  E   H++ V W A  S +      DQ L
Sbjct: 659 SALLNQDTSLGISLVGIYLKCKLLEDANKLLAEVPDHKNLVEWTATISGYAQNGYSDQSL 718

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            +F++M     + +  TF  +LKACS ++ +  GK++H   IK          ++L+DMY
Sbjct: 719 VMFWRMRSHDVRSDEATFASVLKACSEIAALTDGKEIHGLIIKSGFVSYETAASALMDMY 778

Query: 299 DKSGCLEDAGVAFDSLANK-DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
            K G +  +   F  L NK ++  + ++I  +A+ G A  AL  F+KM+   +K +E TL
Sbjct: 779 SKCGDVISSFEIFKELKNKQNIMPWNSMIVGFAKNGYANEALLLFQKMQESQLKPDEVTL 838

Query: 358 ASCLNGCSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
              L  CS    ++ GR L  S++   G +  +     L+ +  + G + +A+ V     
Sbjct: 839 LGVLIACSHAGLISEGRNLFDSMSQVYGIVPRVDHYACLIDLLGRGGHLQEAQEVIDQLP 898

Query: 417 LR-DTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
            R D   W   +     H   E+   A + +++
Sbjct: 899 FRADGVIWATFLAACQMHKDEERGKVAAKKLVE 931



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 110/419 (26%), Positives = 189/419 (45%), Gaps = 39/419 (9%)

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF--YRIKDPDVVAWGAIIT 125
           +A  V+HA  +RLG  L   L  +LVD+Y + G    A +             A  ++++
Sbjct: 73  RACGVLHARVLRLGLPLRGRLGDALVDLYGRSGRVGYAWRALGCCTGAPASGAAASSVLS 132

Query: 126 CLDQQGCCQEAAKIFNLMRES-SVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
           C  + G  ++    F  +R S    P+QF L  ++ A +  G    G  +H  + K GF 
Sbjct: 133 CHARSGSPRDVLDAFQRLRCSIGGTPDQFGLAVVLSACSRLGALEQGRQVHCDVLKSGFC 192

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
           S       LV MY +   V    RVF+ IA  D++ W ++ + +       Q L +F +M
Sbjct: 193 SSAFCQAGLVDMYAKCVEVKDARRVFDGIACPDTICWASMIAGYHRVGRYQQALALFSRM 252

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
              G  P+  T++ I+   +S+                                   G L
Sbjct: 253 EKMGSAPDQVTYVTIISTLASM-----------------------------------GRL 277

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
            DA      +      A+ A+I+SY+Q+G        ++ M+ +G+     T AS L+  
Sbjct: 278 SDARTLLKRIQMPSTVAWNAVISSYSQSGLESEVFGLYKDMKRQGLMPTRSTFASMLSAA 337

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
           + +     G+ +H+ AVK G   ++FV ++L+ +Y K G I DA+ VF  S  ++   WN
Sbjct: 338 ASMTAFDEGQQIHAAAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWN 397

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK 482
            M+ G+V++ L E+ ++ F+ M       D+ TFV VL AC ++  ++ G++ H  +IK
Sbjct: 398 AMLYGFVQNDLQEETIQMFQYMRRADLEADDFTFVSVLGACINLDSLDIGRQVHCITIK 456


>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 201/598 (33%), Positives = 321/598 (53%), Gaps = 2/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F SMP  NVVSW ++++GY+  G+    + L+  M         F+  +++K  + 
Sbjct: 152 ARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSG 211

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
               K  + +HA  ++     D     +L+ MY+K     +A+ VF RI   D+++WG++
Sbjct: 212 LDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSM 271

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSV-KPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I    Q G   EA   F  M   SV +PN+FV  S   A ++  +  CG  IH +  K+G
Sbjct: 272 IAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFG 331

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
             SD   G +L  MY + G +     VF  I   D V+WNA+ + F    +  +    F 
Sbjct: 332 LGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFS 391

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           QM   G  PN  T + +L ACS    +  G Q+H++ +K   + +  V  SL+ MY K  
Sbjct: 392 QMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCS 451

Query: 303 CLEDAGVAFDSLANK-DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
            L DA   F+ + NK D+ ++  ++T+  Q  +A   L+  + M    IK +  TL + L
Sbjct: 452 NLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVL 511

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
                +A+   G  +H   +K+G  LD+ VS AL+ MY KCGS++ A  +F      D  
Sbjct: 512 VSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDII 571

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SW+ +I GY + G G++A E FR M   G  P+EITFV +L+ACSH+G++EEG K + ++
Sbjct: 572 SWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLYRTM 631

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
           ++ Y I+PT +H +CM+D+L RAG     E+FI +    P+ +VW+ LL AC  HGN+E+
Sbjct: 632 QEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIKQMPFVPDVVVWKTLLAACKVHGNLEV 691

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            ++ AE +L+++P   +  V   +I A+ G W DF+ +R+ +    + K P  SWIE+
Sbjct: 692 GKRAAENVLKIDPSNSAAVVMLCNIHASSGHWKDFARLRSSMRRMDVGKVPGQSWIEI 749



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 131/466 (28%), Positives = 221/466 (47%), Gaps = 4/466 (0%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           ++ G+ +H   +      D  L   ++ MY KCG    A  +F  +   +VV+W ++I+ 
Sbjct: 114 LEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISG 173

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             + G    A  ++  M  S   P+ F   S+V++ +   D +    +HA + K  F +D
Sbjct: 174 YSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGAD 233

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
            +  NAL+SMY +  +++    VF  I  +D +SW ++ + F       + L  F +ML 
Sbjct: 234 LIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLS 293

Query: 247 KG-FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
           +  ++PN   F     ACS L +   G+Q+H   IK  L  +   G SL DMY K G LE
Sbjct: 294 QSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLE 353

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
            A   F  +   DL A+ AII  +A    A+ +   F +MR  G+  N+ T+ S L  CS
Sbjct: 354 SARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACS 413

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DTASWN 424
               L +G  +HS  VK G  LD+ V  +L++MY+KC +++DA  VF+    + D  SWN
Sbjct: 414 EPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWN 473

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
            ++   ++     + L   ++M      PD +T   VL +   +   E G +    I K 
Sbjct: 474 TLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMK- 532

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
            G+   I     +I++  + G   E    + ++   P+ + W +L+
Sbjct: 533 SGLNLDISVSNALINMYTKCGSL-ECARKMFDSIGNPDIISWSSLI 577



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 119/439 (27%), Positives = 209/439 (47%), Gaps = 10/439 (2%)

Query: 134 QEAAKIFNLMRESSVKPNQFV-LTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
           +EA K F++ ++ S  P + V  T L+ A +       G  IH  +    ++ D ++ N 
Sbjct: 79  REALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNH 138

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           ++SMY + G +     +F+++  ++ VSW ++ S +  Y   D  + ++ QML  G  P+
Sbjct: 139 ILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPD 198

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
             TF  I+K+CS L D    +QLHAH +K     + +   +L+ MY K   + DA   F 
Sbjct: 199 HFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFS 258

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI-KSNEFTLASCLNGCSPVATLA 371
            +  KDL ++ ++I  ++Q G    AL  FR+M  + + + NEF   S  + CS +    
Sbjct: 259 RIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPD 318

Query: 372 NGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV 431
            GR +H + +K G   D+F   +L  MYAKCG ++ A  VF      D  +WN +I G+ 
Sbjct: 319 CGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFA 378

Query: 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI 491
                +++   F  M   G VP+++T + +L ACS   ++  G +  S I K+ G    I
Sbjct: 379 SVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKM-GFNLDI 437

Query: 492 KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551
                ++ +  +     +      +     + + W  LL AC       L +  A ++L 
Sbjct: 438 PVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTAC-------LQQNQAGEVLR 490

Query: 552 LEPKMESNYVFPSDISATQ 570
           L   M ++ + P  ++ T 
Sbjct: 491 LTKLMFASRIKPDHVTLTN 509



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 162/310 (52%), Gaps = 4/310 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ VF  + + ++V+WNA++ G+A   + ++    F  M+      +  ++ ++L  
Sbjct: 352 LESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCA 411

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD-PDVVA 119
            +    +  G  VH+  +++G  LD  +  SL+ MYSKC   ++AL+VF  I +  D+V+
Sbjct: 412 CSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVS 471

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  ++T   QQ    E  ++  LM  S +KP+   LT+++ ++ +      G  IH  I 
Sbjct: 472 WNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIM 531

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K G   D  V NAL++MY + G +    ++F++I + D +SW++L   +       +   
Sbjct: 532 KSGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFE 591

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK--HSLDGNHVVGTSLVDM 297
           +F  M   G KPN  TF+ IL ACS +  V  G +L+  T++  + +       + +VD+
Sbjct: 592 LFRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLY-RTMQEDYRISPTKEHCSCMVDL 650

Query: 298 YDKSGCLEDA 307
             ++GCL+ A
Sbjct: 651 LARAGCLDVA 660



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 69/133 (51%), Gaps = 2/133 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+++F S+   +++SW++L+ GYA++G G++   LF +M+ +  K ++ +   +L  
Sbjct: 555 LECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTA 614

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            ++ G ++ G ++   M      +  K     +VD+ ++ G  D A     ++   PDVV
Sbjct: 615 CSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIKQMPFVPDVV 674

Query: 119 AWGAIITCLDQQG 131
            W  ++      G
Sbjct: 675 VWKTLLAACKVHG 687


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 193/600 (32%), Positives = 322/600 (53%), Gaps = 1/600 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  +F  M E + +SWN++   YA++G  ++   +F  M+    + +  ++ST+L  
Sbjct: 211 VDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSV 270

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +  + K G+ +H + +++G      +  +L+ MY+  G +  A  VF ++   D+++W
Sbjct: 271 LGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISW 330

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +++      G   +A  +   M  S    N    TS + A         G  +H ++  
Sbjct: 331 NSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVV 390

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G   + ++GNALVSMY + G +S   RV   +  +D V+WNAL   + + E PD+ L  
Sbjct: 391 SGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAA 450

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDV-GFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           F  M ++G   N  T + +L AC    D+   GK LHA+ +    + +  V  SL+ MY 
Sbjct: 451 FQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYA 510

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G L  +   F+ L N+++  + A++ + A  G  E  LK   KMR  G+  ++F+ + 
Sbjct: 511 KCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSE 570

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L+  + +A L  G+ LH +AVK G   D F+  A   MY+KCG I +   +   S  R 
Sbjct: 571 GLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRS 630

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SWN++I    +HG  E+    F  ML+ G  P  +TFV +L+ACSH GL+++G  ++ 
Sbjct: 631 LPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYD 690

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
            I + +G+ P I+H  C+ID+LGR+G+  E E FI++  + PN LVW +LL +C  HGN+
Sbjct: 691 MIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNL 750

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +   K AE L +LEP+ +S YV  S++ AT GRW D   VR  +  + IKK+ +CSW+++
Sbjct: 751 DRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKL 810



 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 157/571 (27%), Positives = 267/571 (46%), Gaps = 13/571 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F  MP  N VSWN +++G    G   + M  F  M D+  K S F +++++     
Sbjct: 11  ARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGR 70

Query: 64  SGYI-KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           SG + + G  VH    + G   D ++S +++ +Y   GL   + KVF  + D +VV+W +
Sbjct: 71  SGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTS 130

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           ++     +G  +E   I+  MR   V  N+  ++ ++ +     D+  G  I   + K G
Sbjct: 131 LMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSG 190

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            ES   V N+L+SM    G V Y + +F+ ++ +D++SWN++ + +      ++  RIF 
Sbjct: 191 LESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFS 250

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            M     + N  T   +L     +    +G+ +H   +K   D    V  +L+ MY  +G
Sbjct: 251 LMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAG 310

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
              +A + F  +  KDL ++ +++ S+   G +  AL     M   G   N  T  S L 
Sbjct: 311 RSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALA 370

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C        GR+LH + V +G   +  +  ALV+MY K G + ++  V      RD  +
Sbjct: 371 ACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVA 430

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG-LIEEGKK-HFSS 480
           WN +IGGY +    +KAL AF+ M  EG   + IT V VLSAC   G L+E GK  H   
Sbjct: 431 WNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYI 490

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +   +     +K+   +I +  + G  +  ++         N + W  +L A + HG+  
Sbjct: 491 VSAGFESDEHVKN--SLITMYAKCGDLSSSQDLFNGLD-NRNIITWNAMLAANAHHGH-- 545

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQG 571
                 E++L+L  KM S  V     S ++G
Sbjct: 546 -----GEEVLKLVSKMRSFGVSLDQFSFSEG 571



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 123/473 (26%), Positives = 216/473 (45%), Gaps = 15/473 (3%)

Query: 95  MYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFV 154
           MY+K G    A  +F  +   + V+W  +++ + + G   E  + F  M +  +KP+ FV
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 155 LTSLVRATTETGDQ-RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAI 213
           + SLV A   +G   R G  +H  + K G  SD  V  A++ +Y   G VS   +VFE +
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120

Query: 214 AHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGK 273
             ++ VSW +L   + D   P++ + I+  M  +G   N  +  +++ +C  L D   G+
Sbjct: 121 PDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGR 180

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
           Q+    +K  L+    V  SL+ M    G ++ A   FD ++ +D  ++ +I  +YAQ G
Sbjct: 181 QIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNG 240

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST 393
             E + + F  MR    + N  T+++ L+    V     GR +H + VK G    + V  
Sbjct: 241 HIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCN 300

Query: 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP 453
            L+ MYA  G   +A  VFK    +D  SWN ++  +V  G    AL     M+  G   
Sbjct: 301 TLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSV 360

Query: 454 DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENF 513
           + +TF   L+AC      E+G+     +  + G+         ++ + G+ G+ +E    
Sbjct: 361 NYVTFTSALAACFTPDFFEKGRI-LHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRV 419

Query: 514 ITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKME-----SNYV 561
           + +     + + W  L+G  +       +++D +K L     M      SNY+
Sbjct: 420 LLQMP-RRDVVAWNALIGGYA-------EDEDPDKALAAFQTMRVEGVSSNYI 464


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 191/548 (34%), Positives = 299/548 (54%), Gaps = 1/548 (0%)

Query: 53  SLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI 112
           +++ +++ +A +  +  G+ +HAM IR GC  + FLS   +++YSKCG  D  +K+F ++
Sbjct: 77  TVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLFDKM 136

Query: 113 KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172
              ++V+W +IIT        QEA   F  MR       QF L+S+++A T  G  + G 
Sbjct: 137 SQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFGT 196

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
            +H ++ K GF  +  VG+ L  MY + G +S   + FE +  +D+V W ++   F    
Sbjct: 197 QVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNG 256

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
              + L  + +M+      +       L ACS+L    FGK LHA  +K   +    +G 
Sbjct: 257 DFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETFIGN 316

Query: 293 SLVDMYDKSGCLEDAGVAFDSLAN-KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
           +L DMY KSG +  A   F   ++   + + TAII  Y +  + E AL  F  +R  GI+
Sbjct: 317 ALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIE 376

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            NEFT  S +  C+  A L +G  LH   VK     D FVS+ LV MY KCG  D +  +
Sbjct: 377 PNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQL 436

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F      D  +WN ++G + +HGLG  A+E F  M+  G  P+ +TFV +L  CSH G++
Sbjct: 437 FDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMV 496

Query: 472 EEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLG 531
           E+G  +FSS++KIYG+ P  +H++C+ID+LGRAGK  E E+FI      PN   W + LG
Sbjct: 497 EDGLNYFSSMEKIYGVVPKEEHYSCVIDLLGRAGKLKEAEDFINNMPFEPNVFGWCSFLG 556

Query: 532 ACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
           AC  HG++E  +  A+KL++LEP+    +V  S+I A + +W D   +R ++    + K 
Sbjct: 557 ACKIHGDMERAKFAADKLMKLEPENSGAHVLLSNIYAKEKQWEDVQSLRKMIKDGNMNKL 616

Query: 592 PSCSWIEV 599
           P  SW+++
Sbjct: 617 PGYSWVDI 624



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 128/450 (28%), Positives = 219/450 (48%), Gaps = 19/450 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++   ++F  M + N+VSW +++ G+A +   Q+ +  FC M+   +  ++F+LS+VL+ 
Sbjct: 126 LDYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQA 185

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             + G I+ G  VH + ++ G   + F+  +L DMYSKCG   +A K F  +   D V W
Sbjct: 186 CTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLW 245

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I    + G  ++A   +  M    V  +Q VL S + A +       G+S+HA I K
Sbjct: 246 TSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILK 305

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ---G 237
            GFE +T +GNAL  MY ++G +   S VF+   H D +S  +L +    Y   DQ    
Sbjct: 306 LGFEYETFIGNALTDMYSKSGDMVSASNVFQ--IHSDCISIVSLTAIIDGYVEMDQIEKA 363

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           L  F  +  +G +PN  TF  ++KAC++ + +  G QLH   +K +   +  V ++LVDM
Sbjct: 364 LSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDM 423

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K G  + +   FD + N D  A+  ++  ++Q G    A++ F  M   G+K N  T 
Sbjct: 424 YGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTF 483

Query: 358 ASCLNGCSPVATLANG-------RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
            + L GCS    + +G         ++ +  K  H       + ++ +  + G + +AE 
Sbjct: 484 VNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHY------SCVIDLLGRAGKLKEAED 537

Query: 411 VFKGSALR-DTASWNMMIGGYVKHGLGEKA 439
                    +   W   +G    HG  E+A
Sbjct: 538 FINNMPFEPNVFGWCSFLGACKIHGDMERA 567



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 65/125 (52%)

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
           S+  T+A  +   +    L  G+ LH++ ++ G L + F+S   + +Y+KCG +D    +
Sbjct: 73  SDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKL 132

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F   + R+  SW  +I G+  +   ++AL +F  M  EG +  +     VL AC+ +G I
Sbjct: 133 FDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAI 192

Query: 472 EEGKK 476
           + G +
Sbjct: 193 QFGTQ 197


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 193/600 (32%), Positives = 322/600 (53%), Gaps = 1/600 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  +F  M E + +SWN++   YA++G  ++   +F  M+    + +  ++ST+L  
Sbjct: 301 VDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSV 360

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +  + K G+ +H + +++G      +  +L+ MY+  G +  A  VF ++   D+++W
Sbjct: 361 LGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISW 420

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +++      G   +A  +   M  S    N    TS + A         G  +H ++  
Sbjct: 421 NSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVV 480

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G   + ++GNALVSMY + G +S   RV   +  +D V+WNAL   + + E PD+ L  
Sbjct: 481 SGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAA 540

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDV-GFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           F  M ++G   N  T + +L AC    D+   GK LHA+ +    + +  V  SL+ MY 
Sbjct: 541 FQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYA 600

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G L  +   F+ L N+++  + A++ + A  G  E  LK   KMR  G+  ++F+ + 
Sbjct: 601 KCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSE 660

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L+  + +A L  G+ LH +AVK G   D F+  A   MY+KCG I +   +   S  R 
Sbjct: 661 GLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRS 720

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SWN++I    +HG  E+    F  ML+ G  P  +TFV +L+ACSH GL+++G  ++ 
Sbjct: 721 LPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYD 780

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
            I + +G+ P I+H  C+ID+LGR+G+  E E FI++  + PN LVW +LL +C  HGN+
Sbjct: 781 MIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNL 840

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +   K AE L +LEP+ +S YV  S++ AT GRW D   VR  +  + IKK+ +CSW+++
Sbjct: 841 DRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKL 900



 Score =  211 bits (537), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 153/571 (26%), Positives = 257/571 (45%), Gaps = 38/571 (6%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F  MP  N VSWN +++G    G   + M  F  M D+  K S F +++++     
Sbjct: 126 ARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGR 185

Query: 64  SGYI-KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           SG + + G  VH    + G   D ++S +++ +Y   GL   + KVF  + D +VV+W +
Sbjct: 186 SGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTS 245

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           ++     +G  +E   I+                          D+  G  I   + K G
Sbjct: 246 LMVGYSDKGEPEEVIDIYK-------------------------DESLGRQIIGQVVKSG 280

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            ES   V N+L+SM    G V Y + +F+ ++ +D++SWN++ + +      ++  RIF 
Sbjct: 281 LESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFS 340

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            M     + N  T   +L     +    +G+ +H   +K   D    V  +L+ MY  +G
Sbjct: 341 LMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAG 400

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
              +A + F  +  KDL ++ +++ S+   G +  AL     M   G   N  T  S L 
Sbjct: 401 RSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALA 460

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C        GR+LH + V +G   +  +  ALV+MY K G + ++  V      RD  +
Sbjct: 461 ACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVA 520

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG-LIEEGKK-HFSS 480
           WN +IGGY +    +KAL AF+ M  EG   + IT V VLSAC   G L+E GK  H   
Sbjct: 521 WNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYI 580

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +   +     +K+   +I +  + G  +  ++         N + W  +L A + HG+  
Sbjct: 581 VSAGFESDEHVKN--SLITMYAKCGDLSSSQDLFNGLD-NRNIITWNAMLAANAHHGH-- 635

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQG 571
                 E++L+L  KM S  V     S ++G
Sbjct: 636 -----GEEVLKLVSKMRSFGVSLDQFSFSEG 661



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 126/508 (24%), Positives = 222/508 (43%), Gaps = 40/508 (7%)

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           GF+       G+ VHA+ ++    L    + +L++MY+K G    A  +F  +   + V+
Sbjct: 81  GFSQITIETTGRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVS 140

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ-RCGESIHAVI 178
           W  +++ + + G   E  + F  M +  +KP+ FV+ SLV A   +G   R G  +H  +
Sbjct: 141 WNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFV 200

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K G  SD  V  A++ +Y   G VS   +VFE +  ++ VSW +L   + D   P++ +
Sbjct: 201 AKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVI 260

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            I+                          D   G+Q+    +K  L+    V  SL+ M 
Sbjct: 261 DIY-------------------------KDESLGRQIIGQVVKSGLESKLAVENSLISML 295

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
              G ++ A   FD ++ +D  ++ +I  +YAQ G  E + + F  MR    + N  T++
Sbjct: 296 GSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVS 355

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           + L+    V     GR +H + VK G    + V   L+ MYA  G   +A  VFK    +
Sbjct: 356 TLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTK 415

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D  SWN ++  +V  G    AL     M+  G   + +TF   L+AC      E+G+   
Sbjct: 416 DLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRI-L 474

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
             +  + G+         ++ + G+ G+ +E    + +     + + W  L+G  +    
Sbjct: 475 HGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMP-RRDVVAWNALIGGYA---- 529

Query: 539 IELDEKDAEKLLELEPKME-----SNYV 561
              +++D +K L     M      SNY+
Sbjct: 530 ---EDEDPDKALAAFQTMRVEGVSSNYI 554



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 359 SCLN--GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
           SC +  G S +     GR +H++ VK    L +  +  L+ MY K G +  A  +F    
Sbjct: 75  SCFDQIGFSQITIETTGRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMP 134

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG-LIEEG 474
           +R+  SWN M+ G V+ GL  + +E FR M D G  P       +++AC   G +  EG
Sbjct: 135 VRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREG 193


>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 813

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 202/599 (33%), Positives = 325/599 (54%), Gaps = 5/599 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSK--FSLSTVLKGF 61
           A +VF  MPE + VSWN ++   +  G  ++ +  F  M   +        ++ +VL   
Sbjct: 191 AMKVFDEMPERDKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKPGIQPDLVTVVSVLPVC 250

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKF-LSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           A +      ++VH  A+++G       +  +LVD+Y KCG    + KVF  I + +V++W
Sbjct: 251 AETEDKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFDEIDERNVISW 310

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            AIIT    +G   +A  +F LM +  ++PN   ++S++    E G  + G  +H    K
Sbjct: 311 NAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLGMEVHGFSLK 370

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              ESD  + N+L+ MY ++G     S +F  +  ++ VSWNA+ + F       + + +
Sbjct: 371 MAIESDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFARNRLEYEAVEL 430

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
             QM  KG  PN  TF  +L AC+ L  +  GK++HA  I+     +  V  +L DMY K
Sbjct: 431 VRQMQAKGETPNNVTFTNVLPACARLGFLNVGKEIHARIIRVGSSLDLFVSNALTDMYSK 490

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            GCL  A   F+ ++ +D  +Y  +I  Y++  ++  +L+ F +MRL G++ +  +    
Sbjct: 491 CGCLNLAQNVFN-ISVRDEVSYNILIIGYSRTNDSLESLRLFSEMRLLGMRPDIVSFMGV 549

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           ++ C+ +A +  G+ +H + V+      +FV+ +L+ +Y +CG ID A  VF     +D 
Sbjct: 550 VSACANLAFIRQGKEIHGLLVRKLFHTHLFVANSLLDLYTRCGRIDLATKVFYCIQNKDV 609

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
           ASWN MI GY   G  + A+  F  M ++G   D ++FV VLSACSH GLIE+G+K+F  
Sbjct: 610 ASWNTMILGYGMRGELDTAINLFEAMKEDGVEYDSVSFVAVLSACSHGGLIEKGRKYFKM 669

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +  +  I PT  H+ACM+D+LGRAG   E  + I    + P+  +W  LLGAC  HGNIE
Sbjct: 670 MCDL-NIEPTHTHYACMVDLLGRAGLMEEAADLIRGLSIIPDTNIWGALLGACRIHGNIE 728

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           L    AE L EL+P+    Y+  S++ A   RW++ + VR L+ S+G KK P CSW++V
Sbjct: 729 LGLWAAEHLFELKPQHCGYYILLSNMYAEAERWDEANKVRELMKSRGAKKNPGCSWVQV 787



 Score =  218 bits (555), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 140/494 (28%), Positives = 254/494 (51%), Gaps = 12/494 (2%)

Query: 19  WNALLNGYAESG--DGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAM 76
           WN L+   + +G  DG      + +M     K  + +   VLK  ++   ++ G+ VH +
Sbjct: 106 WNTLIRANSIAGVFDG---FGTYNTMVRAGVKPDECTYPFVLKVCSDFVEVRKGREVHGV 162

Query: 77  AIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEA 136
           A +LG   D F+  +L+  Y  CGL  +A+KVF  + + D V+W  +I      G  +EA
Sbjct: 163 AFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDEMPERDKVSWNTVIGLCSLHGFYEEA 222

Query: 137 AKIFNLM--RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTL-VGNAL 193
              F +M   +  ++P+   + S++    ET D+     +H    K G     + VGNAL
Sbjct: 223 LGFFRVMVAAKPGIQPDLVTVVSVLPVCAETEDKVMARIVHCYALKVGLLGGHVKVGNAL 282

Query: 194 VSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
           V +Y + G      +VF+ I  ++ +SWNA+ + F         L +F  M+ +G +PN 
Sbjct: 283 VDVYGKCGSEKASKKVFDEIDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNS 342

Query: 254 CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
            T   +L     L     G ++H  ++K +++ +  +  SL+DMY KSG    A   F+ 
Sbjct: 343 VTISSMLPVLGELGLFKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNK 402

Query: 314 LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG 373
           +  +++ ++ A+I ++A+      A++  R+M+ +G   N  T  + L  C+ +  L  G
Sbjct: 403 MGVRNIVSWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFLNVG 462

Query: 374 RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKH 433
           + +H+  ++ G  LD+FVS AL  MY+KCG ++ A+ VF  S +RD  S+N++I GY + 
Sbjct: 463 KEIHARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQNVFNIS-VRDEVSYNILIIGYSRT 521

Query: 434 GLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIK 492
               ++L  F  M   G  PD ++F+ V+SAC+++  I +GK+ H   ++K++     + 
Sbjct: 522 NDSLESLRLFSEMRLLGMRPDIVSFMGVVSACANLAFIRQGKEIHGLLVRKLFHTHLFVA 581

Query: 493 HFACMIDILGRAGK 506
           +   ++D+  R G+
Sbjct: 582 N--SLLDLYTRCGR 593



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 151/307 (49%), Gaps = 1/307 (0%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
            +A  +F  M   N+VSWNA++  +A +    + + L   M+   +  +  + + VL   
Sbjct: 394 RIASTIFNKMGVRNIVSWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPAC 453

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           A  G++  G+ +HA  IR+G +LD F+S +L DMYSKCG  + A  VF  I   D V++ 
Sbjct: 454 ARLGFLNVGKEIHARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQNVF-NISVRDEVSYN 512

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            +I    +     E+ ++F+ MR   ++P+      +V A       R G+ IH ++ + 
Sbjct: 513 ILIIGYSRTNDSLESLRLFSEMRLLGMRPDIVSFMGVVSACANLAFIRQGKEIHGLLVRK 572

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
            F +   V N+L+ +Y   GR+   ++VF  I ++D  SWN +   +      D  + +F
Sbjct: 573 LFHTHLFVANSLLDLYTRCGRIDLATKVFYCIQNKDVASWNTMILGYGMRGELDTAINLF 632

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
             M   G + +  +F+ +L ACS    +  G++        +++  H     +VD+  ++
Sbjct: 633 EAMKEDGVEYDSVSFVAVLSACSHGGLIEKGRKYFKMMCDLNIEPTHTHYACMVDLLGRA 692

Query: 302 GCLEDAG 308
           G +E+A 
Sbjct: 693 GLMEEAA 699



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 118/441 (26%), Positives = 200/441 (45%), Gaps = 24/441 (5%)

Query: 137 AKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTL-VGNALVS 195
           +  F+   ++S  PN   L +L    ++T      + +HA    +GF   ++ +  +L+ 
Sbjct: 25  SSFFSTSLQTSNPPNLLQLCTLCDTLSQT------KQVHAYSLLHGFLPRSVSLCASLIL 78

Query: 196 MYMENGRVSYGSRVFE-AIAHQDSVS-WNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
            Y   G  S    +F+ ++A+  S   WN L  R         G   +  M+  G KP+ 
Sbjct: 79  QYASFGHPSNSLLLFQHSVAYSRSAFLWNTLI-RANSIAGVFDGFGTYNTMVRAGVKPDE 137

Query: 254 CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
           CT+  +LK CS   +V  G+++H    K   DG+  VG +L+  Y   G   DA   FD 
Sbjct: 138 CTYPFVLKVCSDFVEVRKGREVHGVAFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDE 197

Query: 314 LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL--EGIKSNEFTLASCLNGCSPVATLA 371
           +  +D  ++  +I   +  G  E AL  FR M     GI+ +  T+ S L  C+      
Sbjct: 198 MPERDKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKPGIQPDLVTVVSVLPVCAETEDKV 257

Query: 372 NGRLLHSIAVKTGHL-LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGY 430
             R++H  A+K G L   + V  ALV +Y KCGS   ++ VF     R+  SWN +I  +
Sbjct: 258 MARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFDEIDERNVISWNAIITSF 317

Query: 431 VKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITP 489
              G    AL+ FR+M+DEG  P+ +T   +L     +GL + G + H  S+K    I  
Sbjct: 318 SFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLGMEVHGFSLK--MAIES 375

Query: 490 TIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKL 549
            +     +ID+  ++G  + I + I       N + W  ++       N   +  + E  
Sbjct: 376 DVFISNSLIDMYAKSGS-SRIASTIFNKMGVRNIVSWNAMI------ANFARNRLEYEA- 427

Query: 550 LELEPKMESNYVFPSDISATQ 570
           +EL  +M++    P++++ T 
Sbjct: 428 VELVRQMQAKGETPNNVTFTN 448



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 144/328 (43%), Gaps = 19/328 (5%)

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGTSLVDMYDKSGCLEDAGVAFD-SLA- 315
           +L+ C+    +   KQ+HA+++ H      V +  SL+  Y   G   ++ + F  S+A 
Sbjct: 40  LLQLCTLCDTLSQTKQVHAYSLLHGFLPRSVSLCASLILQYASFGHPSNSLLLFQHSVAY 99

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRL 375
           ++  F +  +I + + AG  +     +  M   G+K +E T    L  CS    +  GR 
Sbjct: 100 SRSAFLWNTLIRANSIAGVFD-GFGTYNTMVRAGVKPDECTYPFVLKVCSDFVEVRKGRE 158

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           +H +A K G   D+FV   L+A Y  CG   DA  VF     RD  SWN +IG    HG 
Sbjct: 159 VHGVAFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDEMPERDKVSWNTVIGLCSLHGF 218

Query: 436 GEKALEAFRMML--DEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITP---- 489
            E+AL  FR+M+    G  PD +T V VL  C+     E   K  + I   Y +      
Sbjct: 219 YEEALGFFRVMVAAKPGIQPDLVTVVSVLPVCA-----ETEDKVMARIVHCYALKVGLLG 273

Query: 490 -TIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEK 548
             +K    ++D+ G+ G     +    E     N + W  ++ + S+ G   +D  D  +
Sbjct: 274 GHVKVGNALVDVYGKCGSEKASKKVFDEID-ERNVISWNAIITSFSFRGKY-MDALDVFR 331

Query: 549 LLELEPKMESNYVFPSDISATQGRWNDF 576
           L+ ++  M  N V  S +    G    F
Sbjct: 332 LM-IDEGMRPNSVTISSMLPVLGELGLF 358



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 14/176 (7%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++LA +VF  +   +V SWN ++ GY   G+    ++LF +MK+   ++   S   VL  
Sbjct: 594 IDLATKVFYCIQNKDVASWNTMILGYGMRGELDTAINLFEAMKEDGVEYDSVSFVAVLSA 653

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVVA 119
            ++ G I+ G+    M   L           +VD+  + GL + A  +   +   PD   
Sbjct: 654 CSHGGLIEKGRKYFKMMCDLNIEPTHTHYACMVDLLGRAGLMEEAADLIRGLSIIPDTNI 713

Query: 120 WGAIITCLDQQGCCQ----EAAKIFNLMRESSVKPNQ---FVLTSLVRATTETGDQ 168
           WGA++      G  +     A  +F L      KP     ++L S + A  E  D+
Sbjct: 714 WGALLGACRIHGNIELGLWAAEHLFEL------KPQHCGYYILLSNMYAEAERWDE 763


>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 201/598 (33%), Positives = 321/598 (53%), Gaps = 2/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F SMP  NVVSW ++++GY+  G+    + L+  M         F+  +++K  + 
Sbjct: 152 ARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSG 211

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
               K  + +HA  ++     D     +L+ MY+K     +A+ VF RI   D+++WG++
Sbjct: 212 LDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSM 271

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSV-KPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I    Q G   EA   F  M   SV +PN+FV  S   A ++  +  CG  IH +  K+G
Sbjct: 272 IAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFG 331

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
             SD   G +L  MY + G +     VF  I   D V+WNA+ + F    +  +    F 
Sbjct: 332 LGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFS 391

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           QM   G  PN  T + +L ACS    +  G Q+H++ +K   + +  V  SL+ MY K  
Sbjct: 392 QMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCS 451

Query: 303 CLEDAGVAFDSLANK-DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
            L DA   F+ + NK D+ ++  ++T+  Q  +A   L+  + M    IK +  TL + L
Sbjct: 452 NLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVL 511

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
                +A+   G  +H   +K+G  LD+ VS AL+ MY KCGS++ A  +F      D  
Sbjct: 512 VSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDII 571

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SW+ +I GY + G G++A E FR M   G  P+EITFV +L+ACSH+G++EEG K + ++
Sbjct: 572 SWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLYRTM 631

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
           ++ Y I+PT +H +CM+D+L RAG     E+FI +    P+ +VW+ LL AC  HGN+E+
Sbjct: 632 QEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIRQMPFVPDVVVWKTLLAACKVHGNLEV 691

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            ++ AE +L+++P   +  V   +I A+ G W DF+ +R+ +    + K P  SWIE+
Sbjct: 692 GKRAAENVLKIDPSNSAAVVMLCNIHASSGHWKDFARLRSSMRRMDVGKVPGQSWIEI 749



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 131/466 (28%), Positives = 221/466 (47%), Gaps = 4/466 (0%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           ++ G+ +H   +      D  L   ++ MY KCG    A  +F  +   +VV+W ++I+ 
Sbjct: 114 LEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISG 173

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             + G    A  ++  M  S   P+ F   S+V++ +   D +    +HA + K  F +D
Sbjct: 174 YSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGAD 233

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
            +  NAL+SMY +  +++    VF  I  +D +SW ++ + F       + L  F +ML 
Sbjct: 234 LIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLS 293

Query: 247 KG-FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
           +  ++PN   F     ACS L +   G+Q+H   IK  L  +   G SL DMY K G LE
Sbjct: 294 QSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLE 353

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
            A   F  +   DL A+ AII  +A    A+ +   F +MR  G+  N+ T+ S L  CS
Sbjct: 354 SARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACS 413

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DTASWN 424
               L +G  +HS  VK G  LD+ V  +L++MY+KC +++DA  VF+    + D  SWN
Sbjct: 414 EPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWN 473

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
            ++   ++     + L   ++M      PD +T   VL +   +   E G +    I K 
Sbjct: 474 TLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMK- 532

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
            G+   I     +I++  + G   E    + ++   P+ + W +L+
Sbjct: 533 SGLNLDISVSNALINMYTKCGSL-ECARKMFDSIGNPDIISWSSLI 577



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 119/439 (27%), Positives = 209/439 (47%), Gaps = 10/439 (2%)

Query: 134 QEAAKIFNLMRESSVKPNQFV-LTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
           +EA K F++ ++ S  P + V  T L+ A +       G  IH  +    ++ D ++ N 
Sbjct: 79  REALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNH 138

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           ++SMY + G +     +F+++  ++ VSW ++ S +  Y   D  + ++ QML  G  P+
Sbjct: 139 ILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPD 198

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
             TF  I+K+CS L D    +QLHAH +K     + +   +L+ MY K   + DA   F 
Sbjct: 199 HFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFS 258

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI-KSNEFTLASCLNGCSPVATLA 371
            +  KDL ++ ++I  ++Q G    AL  FR+M  + + + NEF   S  + CS +    
Sbjct: 259 RIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPD 318

Query: 372 NGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV 431
            GR +H + +K G   D+F   +L  MYAKCG ++ A  VF      D  +WN +I G+ 
Sbjct: 319 CGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFA 378

Query: 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI 491
                +++   F  M   G VP+++T + +L ACS   ++  G +  S I K+ G    I
Sbjct: 379 SVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKM-GFNLDI 437

Query: 492 KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551
                ++ +  +     +      +     + + W  LL AC       L +  A ++L 
Sbjct: 438 PVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTAC-------LQQNQAGEVLR 490

Query: 552 LEPKMESNYVFPSDISATQ 570
           L   M ++ + P  ++ T 
Sbjct: 491 LTKLMFASRIKPDHVTLTN 509



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 162/310 (52%), Gaps = 4/310 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ VF  + + ++V+WNA++ G+A   + ++    F  M+      +  ++ ++L  
Sbjct: 352 LESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCA 411

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD-PDVVA 119
            +    +  G  VH+  +++G  LD  +  SL+ MYSKC   ++AL+VF  I +  D+V+
Sbjct: 412 CSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVS 471

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  ++T   QQ    E  ++  LM  S +KP+   LT+++ ++ +      G  IH  I 
Sbjct: 472 WNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIM 531

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K G   D  V NAL++MY + G +    ++F++I + D +SW++L   +       +   
Sbjct: 532 KSGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFE 591

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK--HSLDGNHVVGTSLVDM 297
           +F  M   G KPN  TF+ IL ACS +  V  G +L+  T++  + +       + +VD+
Sbjct: 592 LFRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLY-RTMQEDYRISPTKEHCSCMVDL 650

Query: 298 YDKSGCLEDA 307
             ++GCL+ A
Sbjct: 651 LARAGCLDVA 660



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 69/133 (51%), Gaps = 2/133 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+++F S+   +++SW++L+ GYA++G G++   LF +M+ +  K ++ +   +L  
Sbjct: 555 LECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTA 614

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            ++ G ++ G ++   M      +  K     +VD+ ++ G  D A     ++   PDVV
Sbjct: 615 CSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIRQMPFVPDVV 674

Query: 119 AWGAIITCLDQQG 131
            W  ++      G
Sbjct: 675 VWKTLLAACKVHG 687


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 191/601 (31%), Positives = 320/601 (53%), Gaps = 29/601 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F+ MPE N+ +WN ++  YA   D  +   +F  M  +      F+ ++ L+    
Sbjct: 128 ARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGA 187

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G+ VH+  I  G   D F+  +L+DMY+KC   ++ LKVF  + + + V W +I
Sbjct: 188 LRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSI 247

Query: 124 ITCLDQQGCCQEAAKIFNLMRESS--VKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           I+   Q G   +A  +F  M+ES   ++P+QF  T+L+       +   G  IHA + + 
Sbjct: 248 ISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRA 307

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
               + +V   LV MY E GR++Y   +F  +A +++ SWN++   +Q      + LR+F
Sbjct: 308 NITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLF 367

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            QM L G KP+  +   +L +C SLSD   G++LH   ++++++   ++   LVDMY K 
Sbjct: 368 KQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKC 427

Query: 302 GCLEDAGVAFDSLANKDLFA--YTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           G ++ A   +D    KD     + +I+  YA  G  + +   F +M    I+ +  T+ +
Sbjct: 428 GSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVT 487

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            +N                          + + TALV MY+KCG+I  A  VF     ++
Sbjct: 488 IVNL-------------------------LVLETALVDMYSKCGAITKARTVFDNMNGKN 522

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SWN MI GY KHG  ++AL  +  M  +G  P+E+TF+ +LSACSH GL+EEG + F+
Sbjct: 523 IVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFT 582

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           S+++ Y I    +H+ CM+D+LGRAG+  + + F+ +  + P    W  LLGAC  H ++
Sbjct: 583 SMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDM 642

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           ++    A++L EL+P+    YV  S+I A  GRW +   +R ++  +G+KK+P  SWIE+
Sbjct: 643 DMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEI 702

Query: 600 D 600
           +
Sbjct: 703 N 703



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 189/380 (49%), Gaps = 15/380 (3%)

Query: 109 FYRIKDPDVVAW----GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTE 164
           F+ + +P+  ++    G   T +  +    ++ K  ++  + +   N    +SL++   +
Sbjct: 24  FFLLPNPNSKSFSAHFGHTTTTIKLKFNGPDSPKPTSIHTKPASDVNPLPYSSLIQDCID 83

Query: 165 TGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENG---RVSYGSRVFEAIAHQDSVSW 221
           +   + G+SIH  +   G+  D  +   ++ +Y  +G    + Y  ++FE +  ++  +W
Sbjct: 84  SNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAW 143

Query: 222 NAL---FSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAH 278
           N +   ++R  DY    +   IF +ML  G  P+  TF   L+ C +L     GKQ+H+ 
Sbjct: 144 NTMILAYARVDDYM---EAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSK 200

Query: 279 TIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMA 338
            I     G+  VG +L+DMY K    E     FD +  ++   + +II++ AQ G    A
Sbjct: 201 LIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDA 260

Query: 339 LKCFRKMR--LEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALV 396
           L  F +M+   +GI+ ++FT  + L  C+       GR +H+  ++     ++ V T LV
Sbjct: 261 LVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELV 320

Query: 397 AMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI 456
            MY++CG ++ A+ +F   A R+  SWN MI GY ++G  ++AL  F+ M   G  PD  
Sbjct: 321 HMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCF 380

Query: 457 TFVVVLSACSHMGLIEEGKK 476
           +   +LS+C  +   ++G++
Sbjct: 381 SLSSMLSSCVSLSDSQKGRE 400



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 148/310 (47%), Gaps = 28/310 (9%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  AK +F  M E N  SWN+++ GY ++G+ Q+ + LF  M+    K   FSLS++L  
Sbjct: 329 LNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSS 388

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI--KDPDVV 118
             +    + G+ +H   +R     +  L   LVDMY+KCG  D A KV+ +   KD +  
Sbjct: 389 CVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTA 448

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            W +I+     +G  +E+   F  M ES ++ +   + ++V                   
Sbjct: 449 LWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNL----------------- 491

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
                    ++  ALV MY + G ++    VF+ +  ++ VSWNA+ S +  +    + L
Sbjct: 492 --------LVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEAL 543

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK-HSLDGNHVVGTSLVDM 297
            ++ +M  KG  PN  TF+ IL ACS    V  G ++     + ++++      T +VD+
Sbjct: 544 ILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDL 603

Query: 298 YDKSGCLEDA 307
             ++G LEDA
Sbjct: 604 LGRAGRLEDA 613


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 189/531 (35%), Positives = 297/531 (55%), Gaps = 5/531 (0%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLA---DNALKVFYRIKDPDVVAWGAIITCLDQ 129
           +HA+ +  GC  +  LS  L+   + C LA   D A K+F ++   DV  W  +I     
Sbjct: 48  IHALVVTNGCGQNLLLSTKLI--ITACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGYAD 105

Query: 130 QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
            G C+EA  +++ M  + + P+ +    +VR+       R G+ +H  I K+GF+SD  V
Sbjct: 106 AGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFV 165

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
            ++LV+MY ++G       VF  +  ++ VSW A+ + +       +GL +F +M+  G 
Sbjct: 166 QSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGT 225

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
           +PN  T + +L AC+ L  +  GK +H + IK  +D +  +  +L+ +Y K G +E A  
Sbjct: 226 QPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARS 285

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369
            FD +  ++L ++ A+I +Y Q      A+K FR+M+ E +  +  T+ S ++ C+ +  
Sbjct: 286 LFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGA 345

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           L  GR +H +  + G  +++ ++ AL+ MYAKCG+ID A  VF+    R   SW  MIG 
Sbjct: 346 LNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGA 405

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITP 489
              HG GE AL+ F  M DEG  P+  TF  V +AC H GL+EEG+KHF S+ + Y I P
Sbjct: 406 CASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRKHFESMMRDYSIMP 465

Query: 490 TIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKL 549
            ++H ACM+D+LGRAG   E   FI +  + P+  VW  LLG+C  H N+EL E  AEKL
Sbjct: 466 GVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLGSCRIHSNLELAELVAEKL 525

Query: 550 LELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
             L+P+  + YV  S+I A  GRW D + +R L+  + +KK P  S +EV+
Sbjct: 526 FLLDPQTVTFYVLMSNIYAEAGRWEDAARLRKLMEERELKKIPGHSLVEVN 576



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 126/466 (27%), Positives = 229/466 (49%), Gaps = 6/466 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A+++F  MP+ +V  WN L+ GYA++G  ++ + L+ +M         ++   V++ 
Sbjct: 78  MDYARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRS 137

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    ++ G+ VH   ++ G   D F+  SLV MYS+ G       VF  +   ++V+W
Sbjct: 138 CAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSW 197

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    Q    +E   +F  M  S  +PN   L S++ A         G+ IH    K
Sbjct: 198 TAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIK 257

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G + D  + NAL+++Y + G V     +F+ +  Q+ VSWNA+ + ++   +    +++
Sbjct: 258 LGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKL 317

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M  +    +  T + ++ AC+SL  +  G+ +H    +  L+ N  +  +L+DMY K
Sbjct: 318 FRRMQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAK 377

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G ++ A   F+ L  + + ++T++I + A  G  E ALK F +M+ EG+K N FT A+ 
Sbjct: 378 CGNIDLAREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAV 437

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA-LVAMYAKCGSIDDA-EAVFKGSALR 418
              C     +  GR      ++   ++      A +V +  + GS+ +A E + K     
Sbjct: 438 FTACRHSGLVEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEP 497

Query: 419 DTASWNMMIGGYVKHGLGEKA-LEAFRMMLDEGYVPDEITFVVVLS 463
           D + W  ++G    H   E A L A ++ L +   P  +TF V++S
Sbjct: 498 DVSVWGALLGSCRIHSNLELAELVAEKLFLLD---PQTVTFYVLMS 540


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 202/603 (33%), Positives = 329/603 (54%), Gaps = 7/603 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDM-EKKFSKFSLSTVLK 59
           + L++  F  +P+ +V +WN++++ Y  +G   + +  F  +  + E +   ++   VLK
Sbjct: 167 VSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLK 226

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
                G +  G+ +H  A +LG   + F++ SL+ MYS+ G    A  +F  +   D+ +
Sbjct: 227 A---CGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGS 283

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W A+I+ L Q G   +A  + + MR   +K N   + S++    + GD      IH  + 
Sbjct: 284 WNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVI 343

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K+G E D  V NAL++MY + G +    + F+ +   D VSWN++ + ++  + P     
Sbjct: 344 KHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHG 403

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS-LDGNHVVGTSLVDMY 298
            F +M L GF+P++ T + +    +   D    + +H   ++   L  + V+G ++VDMY
Sbjct: 404 FFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMY 463

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR-LEGIKSNEFTL 357
            K G L+ A   F+ +  KD+ ++  +IT YAQ G A  A++ ++ M   + I  N+ T 
Sbjct: 464 AKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTW 523

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
            S L   + V  L  G  +H   +KT   LD+FV+T L+ +Y KCG + DA ++F     
Sbjct: 524 VSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQ 583

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
             + +WN +I  +  HG  EK L+ F  MLDEG  PD +TFV +LSACSH G +EEGK  
Sbjct: 584 ESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWC 643

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F  +++ YGI P++KH+ CM+D+LGRAG      +FI +  L P+A +W  LLGAC  HG
Sbjct: 644 FRLMQE-YGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHG 702

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           NIEL +  +++L E++ K    YV  S+I A  G+W     VR+L   +G+KK P  S I
Sbjct: 703 NIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTI 762

Query: 598 EVD 600
           EV+
Sbjct: 763 EVN 765



 Score =  225 bits (573), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 147/511 (28%), Positives = 252/511 (49%), Gaps = 17/511 (3%)

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           F +S      + +HA+ +  G     F+S  LV++Y+  G    +   F +I   DV AW
Sbjct: 126 FDSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAW 185

Query: 121 GAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            ++I+     G   EA   F  L+  S ++P+ +    +++A     D   G  IH    
Sbjct: 186 NSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAF 242

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K GF+ +  V  +L+ MY   G       +F+ +  +D  SWNA+ S      +  Q L 
Sbjct: 243 KLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALD 302

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +  +M L+G K N  T + IL  C  L D+     +H + IKH L+ +  V  +L++MY 
Sbjct: 303 VLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYA 362

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G LEDA  AF  +   D+ ++ +II +Y Q  +   A   F KM+L G + +  TL S
Sbjct: 363 KFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVS 422

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLL-DMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
             +  +      N R +H   ++ G L+ D+ +  A+V MYAK G +D A  VF+   ++
Sbjct: 423 LASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVK 482

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLD-EGYVPDEITFVVVLSACSHMGLIEEGKK- 476
           D  SWN +I GY ++GL  +A+E ++MM + +  +P++ T+V +L A +H+G +++G K 
Sbjct: 483 DVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKI 542

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
           H   IK    +   +    C+ID+ G+ G+  +  +   +     +++ W  ++     H
Sbjct: 543 HGRVIKTNLHLDVFVA--TCLIDVYGKCGRLVDAMSLFYQVP-QESSVTWNAIISCHGIH 599

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           G+       AEK L+L  +M    V P  ++
Sbjct: 600 GH-------AEKTLKLFGEMLDEGVKPDHVT 623


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 204/609 (33%), Positives = 344/609 (56%), Gaps = 19/609 (3%)

Query: 1   MELAKRVFKSMPEL-NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           +E A+RVF  M  + ++VSW A+ +  A +G  ++ + L   M ++  + + F+L    +
Sbjct: 92  VEAARRVFDQMCGVRDLVSWTAMASCLARNGAERESLRLLGEMLELGLRPNAFTLCAAAR 151

Query: 60  G-FANSGYIKAGQVVHAMAIRLG-CALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
             F    +  AG VV    ++ G    D  + C+L+DM+++ G    A +VF  + +   
Sbjct: 152 ACFPQELFRLAGGVVLGFVLKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTS 211

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           V W  +IT   Q GC  +  ++F  M +   +P+ + ++S++ A TE G  R G+ +H+V
Sbjct: 212 VVWTLLITRYVQAGCASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQLHSV 271

Query: 178 ICKYGFESDTLVGNALVSMY----MENGRVSYGSRVFEAIAHQDSVSWNALFSRF-QDYE 232
             + G  SD+ V   LV MY    ME   + +  +VF+ +   + +SW AL S + Q   
Sbjct: 272 ALRLGLVSDSCVSCGLVDMYAKLKMERS-MEHARKVFKTMPRHNVMSWTALISGYVQSGV 330

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
             +  + +F +ML +  +PN  T+  +LKAC++LSD   G+Q+HAH +K S+   +VVG 
Sbjct: 331 QENNVMALFREMLNESIRPNHITYSNLLKACANLSDQDSGRQIHAHVLKTSIAHVNVVGN 390

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           +LV MY +SGC+E+A  AFD L   ++ + +  + +            C  K  +EG+  
Sbjct: 391 ALVSMYAESGCMEEARKAFDQLYETNILSMSPDVETERNNAS------CSSK--IEGMDD 442

Query: 353 --NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
             + FT AS L+  + V  L  G+ LH++++K G   D  +S +LV+MYA+CG ++DA  
Sbjct: 443 GVSTFTFASLLSAAASVGLLTKGQKLHALSMKAGFRSDQGISNSLVSMYARCGYLEDACR 502

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
            F      +  SW  +I G  KHG  ++AL  F  M+  G  P+++T++ VLSACSH+GL
Sbjct: 503 AFDEMKDHNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTYIAVLSACSHVGL 562

Query: 471 IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
           ++EGK+HF S++K +G+ P ++H+AC++D+L R+G   E   FI E     +ALVW+ LL
Sbjct: 563 VKEGKEHFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQFINEMPCKADALVWKTLL 622

Query: 531 GACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKK 590
            AC  +GN E+ E  A  ++ LEP+  + YV  S++ A  G W++ + +R+L+  + + K
Sbjct: 623 SACRTYGNTEIGEIAANHVINLEPRDPAPYVLLSNLYADAGLWDEVARIRSLMRDKNLSK 682

Query: 591 EPSCSWIEV 599
           E   SW++V
Sbjct: 683 ETGLSWMDV 691



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 139/492 (28%), Positives = 241/492 (48%), Gaps = 22/492 (4%)

Query: 57  VLKGFANSGYIKAGQVVHAMAIRLGCA-LDKFLSCSLVDMYSKCGLADNALKVFYRI-KD 114
           +L   A +G ++ G+ +H   +R      D  ++ SL+ MYSKCG  + A +VF ++   
Sbjct: 46  LLTSAARAGDLRLGRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMCGV 105

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR-CGES 173
            D+V+W A+ +CL + G  +E+ ++   M E  ++PN F L +  RA       R  G  
Sbjct: 106 RDLVSWTAMASCLARNGAERESLRLLGEMLELGLRPNAFTLCAAARACFPQELFRLAGGV 165

Query: 174 IHAVICKYGF-ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
           +   + K GF  +D  VG AL+ M+  NG +    RVF+ +  + SV W  L +R+    
Sbjct: 166 VLGFVLKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAG 225

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
              + + +F  ML  GF+P+  +   ++ AC+ L  V  G+QLH+  ++  L  +  V  
Sbjct: 226 CASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSC 285

Query: 293 SLVDMYDK---SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAE---MALKCFRKMR 346
            LVDMY K      +E A   F ++   ++ ++TA+I+ Y Q+G  E   MAL  FR+M 
Sbjct: 286 GLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMAL--FREML 343

Query: 347 LEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSID 406
            E I+ N  T ++ L  C+ ++   +GR +H+  +KT       V  ALV+MYA+ G ++
Sbjct: 344 NESIRPNHITYSNLLKACANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCME 403

Query: 407 DAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
           +A   F      +  S +  +     +      +E     +D+G      TF  +LSA +
Sbjct: 404 EARKAFDQLYETNILSMSPDVETERNNASCSSKIEG----MDDGV--STFTFASLLSAAA 457

Query: 467 HMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV 525
            +GL+ +G+K H  S+K  +     I +   ++ +  R G   +      E K   N + 
Sbjct: 458 SVGLLTKGQKLHALSMKAGFRSDQGISN--SLVSMYARCGYLEDACRAFDEMK-DHNVIS 514

Query: 526 WENLLGACSWHG 537
           W +++   + HG
Sbjct: 515 WTSIISGLAKHG 526



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 6/228 (2%)

Query: 254 CTFIVILKACSSLSDVGFGKQLHAHTIKHS-LDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
           C    +L + +   D+  G+ LH   ++   LD + VV  SL+ MY K G +E A   FD
Sbjct: 41  CDAAKLLTSAARAGDLRLGRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFD 100

Query: 313 SLAN-KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP--VAT 369
            +   +DL ++TA+ +  A+ G    +L+   +M   G++ N FTL +    C P  +  
Sbjct: 101 QMCGVRDLVSWTAMASCLARNGAERESLRLLGEMLELGLRPNAFTLCAAARACFPQELFR 160

Query: 370 LANGRLLHSIAVKTGHL-LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
           LA G +L    +KTG    D+ V  AL+ M+A+ G +  A+ VF G   R +  W ++I 
Sbjct: 161 LAGGVVL-GFVLKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLIT 219

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            YV+ G   K +E F  MLD+G+ PD  +   ++SAC+ +G +  G++
Sbjct: 220 RYVQAGCASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQ 267


>gi|116310835|emb|CAH67622.1| OSIGBa0140J09.3 [Oryza sativa Indica Group]
          Length = 1027

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 203/599 (33%), Positives = 319/599 (53%), Gaps = 3/599 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AK VF    E N+V WNA+L G+ ++   ++ + +F  M     +  +F+  ++L     
Sbjct: 379 AKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTY 438

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G+ VH + I+    +  F++ + +DMYSK G   +A  +F  I   D ++W A+
Sbjct: 439 LSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNAL 498

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
              L Q    +EA  +   MR   + P+    ++ + A +       G+ IH +  KYG 
Sbjct: 499 TVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGI 558

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            S+  VG++L+ +Y ++G V    ++F  +     V  NAL + F    + D+ +++F Q
Sbjct: 559 CSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQ 618

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS-LDGNHVVGTSLVDMYDKSG 302
           +L  G KP+  TF  IL  CS   +   GKQ+H +T+K   L  + ++G SL  +Y KS 
Sbjct: 619 VLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSK 678

Query: 303 CLEDAGVAFDSLAN-KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
            LEDA      + + K+LF +TAII+ YAQ G  + +L  F +MR   ++S+E T AS L
Sbjct: 679 MLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVL 738

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG-SALRDT 420
             CS V   A+G+ +H +  K+G       ++AL+ MY+KCG +  +   FK     +D 
Sbjct: 739 KACSDVTAFADGKEIHGLITKSGFGSYETATSALIDMYSKCGDVISSFEAFKELKNKQDI 798

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
             WN MI G+ K+G  ++AL  F+ M +    PDE+TF+ VL AC+H GLI EG+  F  
Sbjct: 799 MPWNSMIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVLIACTHSGLISEGRHFFGP 858

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           ++K+YG+TP + H+AC ID+LGR G   E +  I +    P+ +VW   L AC  H + E
Sbjct: 859 MRKVYGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPDGVVWATYLAACRMHKDEE 918

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
             +  A KL+ELEP+  S YV  S + A  G W +    R  +  +G+ K P CSWI V
Sbjct: 919 RGKIAARKLVELEPQYSSTYVLLSSLHAATGNWAEAKVTRESMREKGVAKFPGCSWITV 977



 Score =  238 bits (608), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 155/570 (27%), Positives = 281/570 (49%), Gaps = 12/570 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  + K MP  + V+WNA+++G+A+SG    V+ L+  M+      ++ + +++L  
Sbjct: 275 LDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSA 334

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            AN      GQ +HA A+  G   + F+  SL+++Y+KCG   +A  VF    + ++V W
Sbjct: 335 AANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMW 394

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A++T   Q    +EA ++F  M   +++ ++F   S++ A T       G+ +H V  K
Sbjct: 395 NAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIK 454

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              +    V NA + MY + G +     +F  I ++DS+SWNAL          ++ + +
Sbjct: 455 NCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCM 514

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
             +M L G  P+  +F   + ACS++     GKQ+H   IK+ +  NH VG+SL+D+Y K
Sbjct: 515 LKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSK 574

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +E +   F  +    +    A+I  + Q    + A++ F+++  +G+K +  T +S 
Sbjct: 575 HGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSI 634

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLL-DMFVSTALVAMYAKCGSIDDAEAVF-KGSALR 418
           L+GCS     A G+ +H   +K+G L  D  +  +L  +Y K   ++DA  +  +    +
Sbjct: 635 LSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHK 694

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-H 477
           +   W  +I GY ++G G+ +L +F  M       DE TF  VL ACS +    +GK+ H
Sbjct: 695 NLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDVTAFADGKEIH 754

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
               K  +G   T    + +ID+  + G          E K   + + W +++   + +G
Sbjct: 755 GLITKSGFGSYETAT--SALIDMYSKCGDVISSFEAFKELKNKQDIMPWNSMIVGFAKNG 812

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDIS 567
                   A++ L L  KME   + P +++
Sbjct: 813 Y-------ADEALLLFQKMEELQIKPDEVT 835



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 141/512 (27%), Positives = 248/512 (48%), Gaps = 43/512 (8%)

Query: 20  NALLNGYAESGDGQKVMHLFCSMK-DMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAI 78
           ++LL+ +A SG    V+  F  ++     +  +F L+ VL   +  G +  G+ VH   +
Sbjct: 126 SSLLSCHARSGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVV 185

Query: 79  RLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAK 138
           + G +   F   +LVDMY+KCG   NA +VF  I  PD + W ++I C  + GC QEA  
Sbjct: 186 KSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALA 245

Query: 139 IFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYM 198
           +F+ M +    P+Q  L +                                   ++S   
Sbjct: 246 LFSRMDKMGSAPDQVTLVT-----------------------------------IISTLA 270

Query: 199 ENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIV 258
            +GR+ + + + + +    +V+WNA+ S           L ++  M   G  P   TF  
Sbjct: 271 SSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFAS 330

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKD 318
           +L A +++     G+Q+HA  + H LD N  VG+SL+++Y K GC  DA   FD    K+
Sbjct: 331 MLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKN 390

Query: 319 LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHS 378
           +  + A++T + Q    E A++ F+ M    ++++EFT  S L  C+ +++   G+ +H 
Sbjct: 391 IVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHC 450

Query: 379 IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEK 438
           + +K    + +FV+ A + MY+K G+I DA+A+F     +D+ SWN +  G  ++   E+
Sbjct: 451 VTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQNLEEEE 510

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACM 497
           A+   + M   G  PD+++F   ++ACS++   E GK+ H  +IK  YGI       + +
Sbjct: 511 AVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIK--YGICSNHAVGSSL 568

Query: 498 IDILGRAGKFTEIENFITE---TKLTP-NALV 525
           ID+  + G          +   + + P NAL+
Sbjct: 569 IDLYSKHGDVESSRKIFAQVDASSIVPINALI 600



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/463 (26%), Positives = 223/463 (48%), Gaps = 35/463 (7%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+RVF  +   + + W++++  Y   G  Q+ + LF  M  M     + +L T++   A+
Sbjct: 212 ARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLAS 271

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           SG +                                   D+A  +  ++  P  VAW A+
Sbjct: 272 SGRL-----------------------------------DHATALLKKMPTPSTVAWNAV 296

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   Q G       ++  MR   + P +    S++ A         G+ +HA    +G 
Sbjct: 297 ISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGL 356

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           +++  VG++L+++Y + G  S    VF+    ++ V WNA+ + F   E P++ +R+F  
Sbjct: 357 DANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQY 416

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M+    + +  TF+ IL AC+ LS    GKQ+H  TIK+ +D +  V  + +DMY K G 
Sbjct: 417 MMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGA 476

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           + DA   F  +  KD  ++ A+    AQ  E E A+   ++MRL GI  ++ + ++ +N 
Sbjct: 477 IGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINA 536

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           CS +     G+ +H +A+K G   +  V ++L+ +Y+K G ++ +  +F           
Sbjct: 537 CSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPI 596

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
           N +I G+V++   ++A++ F+ +L +G  P  +TF  +LS CS
Sbjct: 597 NALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCS 639



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 130/522 (24%), Positives = 233/522 (44%), Gaps = 52/522 (9%)

Query: 71  QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
           + +H   +R G  L   L  SLV++Y K G    A        +    A  ++++C  + 
Sbjct: 76  RALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARS 135

Query: 131 GCCQEAAKIFNLMR-ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
           G   +    F  +R  +  +P+QF L  ++ A +  G    G  +H  + K GF S    
Sbjct: 136 GSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFC 195

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
             ALV MY + G V    RVF+ IA  D++ W+++ + +       + L +F +M   G 
Sbjct: 196 EAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGS 255

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
            P+  T + I+   +S                                   SG L+ A  
Sbjct: 256 APDQVTLVTIISTLAS-----------------------------------SGRLDHATA 280

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369
               +      A+ A+I+ +AQ+G     L  ++ MR  G+     T AS L+  + +  
Sbjct: 281 LLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKA 340

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
              G+ +H+ AV  G   ++FV ++L+ +YAKCG   DA+ VF  S  ++   WN M+ G
Sbjct: 341 FVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTG 400

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGIT 488
           +V++ L E+A+  F+ M+      DE TFV +L AC+++     GK+ H  +IK    I+
Sbjct: 401 FVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDIS 460

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTP--NALVWENLLGACSWHGNIELDEKDA 546
             + +    +D+  + G   + +   +   L P  +++ W  L    + +    L+E++A
Sbjct: 461 LFVAN--ATLDMYSKYGAIGDAKALFS---LIPYKDSISWNALTVGLAQN----LEEEEA 511

Query: 547 EKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGI 588
             +L+   +M  + + P D+S +    N  S +RA  + + I
Sbjct: 512 VCMLK---RMRLHGITPDDVSFSTA-INACSNIRATETGKQI 549



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 160/365 (43%), Gaps = 41/365 (11%)

Query: 168 QRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR 227
           Q C  ++H  I + G      +G++LV +Y ++GRV Y          + S + ++L S 
Sbjct: 73  QTC-RALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSC 131

Query: 228 FQDYESPDQGLRIF-YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDG 286
                SP   L  F Y     G +P+     V+L ACS +  + +G+Q+H   +K     
Sbjct: 132 HARSGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSS 191

Query: 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR 346
           +     +LVDMY K G + +A   FD +A  D   ++++I  Y + G  + AL  F +M 
Sbjct: 192 SVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMD 251

Query: 347 LEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSID 406
             G   ++ TL +                                   +++  A  G +D
Sbjct: 252 KMGSAPDQVTLVT-----------------------------------IISTLASSGRLD 276

Query: 407 DAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
            A A+ K      T +WN +I G+ + GL    L  ++ M   G  P   TF  +LSA +
Sbjct: 277 HATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAA 336

Query: 467 HMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV 525
           +M    EG++ H +++  ++G+   +   + +I++  + G  ++ +N + +     N ++
Sbjct: 337 NMKAFVEGQQMHAAAV--MHGLDANVFVGSSLINLYAKCGCPSDAKN-VFDLSCEKNIVM 393

Query: 526 WENLL 530
           W  +L
Sbjct: 394 WNAML 398


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 194/549 (35%), Positives = 303/549 (55%), Gaps = 3/549 (0%)

Query: 53  SLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI 112
           +L+ V++ +A +  ++ G+ +HA+ I  G     FL+  LV+MYSKCG  D+ALK+F  +
Sbjct: 7   ALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTM 66

Query: 113 KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172
              ++V+W A+I+ L Q     EA + F  MR     P QF  +S +RA    G    G+
Sbjct: 67  PQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGK 126

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
            +H +  K+G  S+  VG+ L  MY + G +    +VFE +  +D VSW A+   +    
Sbjct: 127 QMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIG 186

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
             ++ L  F +M+ +    +       L AC +L    FG+ +H+  +K   + +  VG 
Sbjct: 187 EFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGN 246

Query: 293 SLVDMYDKSGCLEDAGVAF--DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
           +L DMY K+G +E A   F  DS   +++ +YT +I  Y +  + E  L  F ++R +GI
Sbjct: 247 ALTDMYSKAGDMESASNVFGIDSEC-RNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGI 305

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
           + NEFT +S +  C+  A L  G  LH+  +K     D FVS+ LV MY KCG ++ A  
Sbjct: 306 EPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQ 365

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
            F         +WN ++  + +HGLG+ A++ F  M+D G  P+ ITF+ +L+ CSH GL
Sbjct: 366 AFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGL 425

Query: 471 IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
           +EEG  +F S+ K YG+ P  +H++C+ID+LGRAG+  E + FI      PNA  W + L
Sbjct: 426 VEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFL 485

Query: 531 GACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKK 590
           GAC  HG+ E+ +  AEKL++LEPK     V  S+I A + +W D   VR  +    +KK
Sbjct: 486 GACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKK 545

Query: 591 EPSCSWIEV 599
            P  SW++V
Sbjct: 546 LPGYSWVDV 554



 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 124/374 (33%), Positives = 208/374 (55%), Gaps = 1/374 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A ++F +MP+ N+VSW A+++G +++    + +  FC M+   +  ++F+ S+ ++ 
Sbjct: 56  LDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRA 115

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+ G I+ G+ +H +A++ G   + F+  +L DMYSKCG   +A KVF  +   D V+W
Sbjct: 116 CASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSW 175

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    + G  +EA   F  M +  V  +Q VL S + A       + G S+H+ + K
Sbjct: 176 TAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVK 235

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH-QDSVSWNALFSRFQDYESPDQGLR 239
            GFESD  VGNAL  MY + G +   S VF   +  ++ VS+  L   + + E  ++GL 
Sbjct: 236 LGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLS 295

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F ++  +G +PN  TF  ++KAC++ + +  G QLHA  +K + D +  V + LVDMY 
Sbjct: 296 VFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYG 355

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G LE A  AFD + +    A+ ++++ + Q G  + A+K F +M   G+K N  T  S
Sbjct: 356 KCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFIS 415

Query: 360 CLNGCSPVATLANG 373
            L GCS    +  G
Sbjct: 416 LLTGCSHAGLVEEG 429


>gi|242051555|ref|XP_002454923.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
 gi|241926898|gb|EES00043.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
          Length = 741

 Score =  361 bits (926), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 207/602 (34%), Positives = 324/602 (53%), Gaps = 8/602 (1%)

Query: 7   VFKSMPE--LNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKF-SKFSLSTVLKGFAN 63
           VF  +P    +V SWN+LLN  +       + H    M   +    +  S + V    A 
Sbjct: 73  VFADIPAGLRDVASWNSLLNPLSRHQPLAALSHFRSMMSSTDAVLPTPHSFAAVFTAAAR 132

Query: 64  SGYIKAGQVVHAMAIRLGCAL---DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                AG V HA A +L  +    + F+S +L++MY K G   +A +VF ++   + V+W
Sbjct: 133 VPSASAGAVAHAFACKLPSSSGSNNVFVSTALLNMYCKLGAISDARRVFDQMPHRNAVSW 192

Query: 121 GAIITCLDQQGCCQEAAKIFNLM-RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            A+++      C +EA ++F LM +E  ++ N+FV T+++ A +       G  +H ++ 
Sbjct: 193 AAMVSGYATGKCSEEAFELFRLMLQECPLEKNEFVATAVLSAVSVPLGLLIGVQLHGLVL 252

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K G      V N+LV+MY +   +     VF +   ++S++W+A+ + +      D    
Sbjct: 253 KDGLVGFVSVENSLVTMYAKAECMDAAMAVFGSSKERNSITWSAMITGYAQNGEADCAAT 312

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F QM   GF P   TF+ IL A S +  +  GKQ H   +K   +    V ++LVDMY 
Sbjct: 313 MFLQMHSAGFSPTEFTFVGILNASSDMGALVVGKQAHGLMVKLGFERQVYVKSALVDMYA 372

Query: 300 KSGCLEDAGVAFDSLAN-KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
           K GC  DA   F  L +  D+  +TA+IT + Q GE E AL  + +M  EG+  +  T+ 
Sbjct: 373 KCGCTGDAKDGFHQLYDVDDVVIWTAMITGHVQNGEHEEALMLYSRMDKEGVMPSYLTVT 432

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L  C+ +A L  G+ LH+  +K G  L   V TAL  MY+KCG+++D+  VF+    R
Sbjct: 433 SVLRACACLAALEPGKQLHAQILKCGFGLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDR 492

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D  SWN +I G+ +HG G  AL+ F  M  EG  PD ITF+ VL ACSHMGL++ G  +F
Sbjct: 493 DIISWNSIISGFSQHGRGRDALDLFEEMKLEGIAPDHITFINVLCACSHMGLVDRGWFYF 552

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            ++ K YG+ P + H+AC++DIL RAG+  E ++FI    +     +W  +LGAC    +
Sbjct: 553 RAMSKDYGLIPKLDHYACIVDILSRAGQLKEAKDFIESITIDHGTCLWRIVLGACRSLRD 612

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
            ++     E+L+EL  +  S Y+  S+I A Q +WND   VR L+  +G+ K+P CSW+E
Sbjct: 613 FDVGAYAGEQLMELGTEDSSAYILLSNIYAAQRKWNDVERVRHLMRLRGVSKDPGCSWVE 672

Query: 599 VD 600
           ++
Sbjct: 673 LN 674



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 147/503 (29%), Positives = 235/503 (46%), Gaps = 23/503 (4%)

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMY--SKCGLADNALKVFYRIKD--PDVVAWGAI 123
           +AG  +H  A++ G A    +S SL+  Y      L   A  VF  I     DV +W ++
Sbjct: 31  RAGDALHGWALKSGAASHTPVSNSLITFYCSPPRPLLGAAFAVFADIPAGLRDVASWNSL 90

Query: 124 ITCLDQQGCCQEAAKIFNLMRES-SVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +  L +       +   ++M  + +V P      ++  A         G   HA  CK  
Sbjct: 91  LNPLSRHQPLAALSHFRSMMSSTDAVLPTPHSFAAVFTAAARVPSASAGAVAHAFACKLP 150

Query: 183 FES---DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
             S   +  V  AL++MY + G +S   RVF+ + H+++VSW A+ S +   +  ++   
Sbjct: 151 SSSGSNNVFVSTALLNMYCKLGAISDARRVFDQMPHRNAVSWAAMVSGYATGKCSEEAFE 210

Query: 240 IFYQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           +F  ML +   + N      +L A S    +  G QLH   +K  L G   V  SLV MY
Sbjct: 211 LFRLMLQECPLEKNEFVATAVLSAVSVPLGLLIGVQLHGLVLKDGLVGFVSVENSLVTMY 270

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K+ C++ A   F S   ++   ++A+IT YAQ GEA+ A   F +M   G    EFT  
Sbjct: 271 AKAECMDAAMAVFGSSKERNSITWSAMITGYAQNGEADCAATMFLQMHSAGFSPTEFTFV 330

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF-KGSAL 417
             LN  S +  L  G+  H + VK G    ++V +ALV MYAKCG   DA+  F +   +
Sbjct: 331 GILNASSDMGALVVGKQAHGLMVKLGFERQVYVKSALVDMYAKCGCTGDAKDGFHQLYDV 390

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK- 476
            D   W  MI G+V++G  E+AL  +  M  EG +P  +T   VL AC+ +  +E GK+ 
Sbjct: 391 DDVVIWTAMITGHVQNGEHEEALMLYSRMDKEGVMPSYLTVTSVLRACACLAALEPGKQL 450

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNA--LVWENLLGACS 534
           H   +K  +G+  ++     +  +  + G    +E+ +   +  P+   + W +++   S
Sbjct: 451 HAQILKCGFGLGGSVG--TALSTMYSKCGN---LEDSMVVFRRMPDRDIISWNSIISGFS 505

Query: 535 WHGNIELDEKDAEKLLELEPKME 557
            HG      +DA  L E E K+E
Sbjct: 506 QHGR----GRDALDLFE-EMKLE 523



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 125/432 (28%), Positives = 210/432 (48%), Gaps = 8/432 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLKGFA 62
           A+RVF  MP  N VSW A+++GYA     ++   LF  M ++   + ++F  + VL   +
Sbjct: 177 ARRVFDQMPHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQECPLEKNEFVATAVLSAVS 236

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSC--SLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
               +  G  +H + ++ G  L  F+S   SLV MY+K    D A+ VF   K+ + + W
Sbjct: 237 VPLGLLIGVQLHGLVLKDG--LVGFVSVENSLVTMYAKAECMDAAMAVFGSSKERNSITW 294

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+IT   Q G    AA +F  M  +   P +F    ++ A+++ G    G+  H ++ K
Sbjct: 295 SAMITGYAQNGEADCAATMFLQMHSAGFSPTEFTFVGILNASSDMGALVVGKQAHGLMVK 354

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS-WNALFSRFQDYESPDQGLR 239
            GFE    V +ALV MY + G        F  +   D V  W A+ +        ++ L 
Sbjct: 355 LGFERQVYVKSALVDMYAKCGCTGDAKDGFHQLYDVDDVVIWTAMITGHVQNGEHEEALM 414

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           ++ +M  +G  P+  T   +L+AC+ L+ +  GKQLHA  +K        VGT+L  MY 
Sbjct: 415 LYSRMDKEGVMPSYLTVTSVLRACACLAALEPGKQLHAQILKCGFGLGGSVGTALSTMYS 474

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G LED+ V F  + ++D+ ++ +II+ ++Q G    AL  F +M+LEGI  +  T  +
Sbjct: 475 KCGNLEDSMVVFRRMPDRDIISWNSIISGFSQHGRGRDALDLFEEMKLEGIAPDHITFIN 534

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA-LVAMYAKCGSIDDAEAVFKGSAL- 417
            L  CS +  +  G        K   L+      A +V + ++ G + +A+   +   + 
Sbjct: 535 VLCACSHMGLVDRGWFYFRAMSKDYGLIPKLDHYACIVDILSRAGQLKEAKDFIESITID 594

Query: 418 RDTASWNMMIGG 429
             T  W +++G 
Sbjct: 595 HGTCLWRIVLGA 606



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/273 (32%), Positives = 144/273 (52%), Gaps = 1/273 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A  VF S  E N ++W+A++ GYA++G+      +F  M       ++F+   +L  
Sbjct: 276 MDAAMAVFGSSKERNSITWSAMITGYAQNGEADCAATMFLQMHSAGFSPTEFTFVGILNA 335

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD-PDVVA 119
            ++ G +  G+  H + ++LG     ++  +LVDMY+KCG   +A   F+++ D  DVV 
Sbjct: 336 SSDMGALVVGKQAHGLMVKLGFERQVYVKSALVDMYAKCGCTGDAKDGFHQLYDVDDVVI 395

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W A+IT   Q G  +EA  +++ M +  V P+   +TS++RA         G+ +HA I 
Sbjct: 396 WTAMITGHVQNGEHEEALMLYSRMDKEGVMPSYLTVTSVLRACACLAALEPGKQLHAQIL 455

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K GF     VG AL +MY + G +     VF  +  +D +SWN++ S F  +      L 
Sbjct: 456 KCGFGLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDRDIISWNSIISGFSQHGRGRDALD 515

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFG 272
           +F +M L+G  P+  TFI +L ACS +  V  G
Sbjct: 516 LFEEMKLEGIAPDHITFINVLCACSHMGLVDRG 548



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 117/419 (27%), Positives = 198/419 (47%), Gaps = 19/419 (4%)

Query: 161 ATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGS--RVFEAIAH--Q 216
           A +    +R G+++H    K G  S T V N+L++ Y    R   G+   VF  I    +
Sbjct: 23  AASSVRTRRAGDALHGWALKSGAASHTPVSNSLITFYCSPPRPLLGAAFAVFADIPAGLR 82

Query: 217 DSVSWNALFSRFQDYESPDQGLRIFYQML--LKGFKPNMCTFIVILKACSSLSDVGFGKQ 274
           D  SWN+L +    ++ P   L  F  M+       P   +F  +  A + +     G  
Sbjct: 83  DVASWNSLLNPLSRHQ-PLAALSHFRSMMSSTDAVLPTPHSFAAVFTAAARVPSASAGAV 141

Query: 275 LHAHTIK---HSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQ 331
            HA   K    S   N  V T+L++MY K G + DA   FD + +++  ++ A+++ YA 
Sbjct: 142 AHAFACKLPSSSGSNNVFVSTALLNMYCKLGAISDARRVFDQMPHRNAVSWAAMVSGYAT 201

Query: 332 AGEAEMALKCFRKMRLE-GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
              +E A + FR M  E  ++ NEF   + L+  S    L  G  LH + +K G +  + 
Sbjct: 202 GKCSEEAFELFRLMLQECPLEKNEFVATAVLSAVSVPLGLLIGVQLHGLVLKDGLVGFVS 261

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
           V  +LV MYAK   +D A AVF  S  R++ +W+ MI GY ++G  + A   F  M   G
Sbjct: 262 VENSLVTMYAKAECMDAAMAVFGSSKERNSITWSAMITGYAQNGEADCAATMFLQMHSAG 321

Query: 451 YVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEI 510
           + P E TFV +L+A S MG +  GK+    + K+ G    +   + ++D+  + G   + 
Sbjct: 322 FSPTEFTFVGILNASSDMGALVVGKQAHGLMVKL-GFERQVYVKSALVDMYAKCGCTGDA 380

Query: 511 ENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISAT 569
           ++   +     + ++W  ++      G+++  E   E+ L L  +M+   V PS ++ T
Sbjct: 381 KDGFHQLYDVDDVVIWTAMIT-----GHVQNGEH--EEALMLYSRMDKEGVMPSYLTVT 432


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1038

 Score =  360 bits (925), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 194/602 (32%), Positives = 328/602 (54%), Gaps = 5/602 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  +F  + E + +SWN+++  YA++G  ++   +F  M+    + +  ++ST+L  
Sbjct: 312 VDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSV 371

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +  + K G+ +H + +++G      +  +L+ MY+  G ++ A  VF ++   D+++W
Sbjct: 372 LGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISW 431

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRA--TTETGDQRCGESIHAVI 178
            +++      G   +A  I   M  +    N    TS + A  + E  D+  G  +H ++
Sbjct: 432 NSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDK--GRILHGLV 489

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
              G   + ++GNALVSMY + G +S   RV   +  +D V+WNAL   + + E PD+ L
Sbjct: 490 VVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYAENEDPDKAL 549

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDV-GFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
             F  + ++G   N  T + +L AC    D+   GK LHA+ +    + +  V  SL+ M
Sbjct: 550 AAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHAYIVSAGFESDEHVKNSLITM 609

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K G L  +   F+ L N+ +  + AI+ + A  G  E  LK   KMR  G+  ++F+ 
Sbjct: 610 YAKCGDLSSSQDLFNGLDNRSIITWNAILAANAHHGHGEEVLKLVSKMRSFGLSLDQFSF 669

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           +  L+  + +A L  G+ LH +AVK G  LD F+  A   MY+KCG I +   +   S  
Sbjct: 670 SEGLSAAAKLAVLEEGQQLHGLAVKLGFELDCFIFNAAADMYSKCGEIGEVVKMLPPSVN 729

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           R   SWN++I    +HG  E+  E F  ML+ G  P  +TFV +L+ACSH GL+++G  +
Sbjct: 730 RSLPSWNILISALGRHGYFEEVCETFHEMLEMGIKPGHVTFVSLLTACSHGGLVDQGLAY 789

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           +  I K +G+ P I+H  C+ID+LGR+G+  E E FI++  + PN LVW +LL +C  H 
Sbjct: 790 YDMIAKDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHR 849

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           +++   K AE L +LEP+ +S +V  S++ AT GRW D   VR  +  + IKK+ +CSW+
Sbjct: 850 DLDRGRKAAENLSKLEPEDDSVFVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWV 909

Query: 598 EV 599
           ++
Sbjct: 910 KL 911



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 154/558 (27%), Positives = 264/558 (47%), Gaps = 13/558 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F  MP  N VSWN +++G    G   + M  F  M D+  K S F +++++     
Sbjct: 112 ARYLFDKMPVRNEVSWNTMMSGIVRVGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGR 171

Query: 64  SGYI-KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           SG + + G  VH    + G   D ++S +++ +Y   GL   + KVF  + D +VV+W +
Sbjct: 172 SGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTS 231

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           ++     +G  +E   I+  MR   V+ N+  ++ ++ +     D+  G  I   + K G
Sbjct: 232 LMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGLLKDESLGRQIIGQVIKSG 291

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            ES   V N+L+SM+   G V Y + +F  I+ +D++SWN++ + +      ++  RIF 
Sbjct: 292 LESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFN 351

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            M     + N  T   +L     +    +G+ +H   +K   D    V  +L+ MY  +G
Sbjct: 352 LMRRFHDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAG 411

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
             E+A + F  +  KDL ++ +++ S+   G +  AL     M   G   N  T  S L 
Sbjct: 412 RSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALA 471

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C        GR+LH + V +G   +  +  ALV+MY K G +  +  V      RD  +
Sbjct: 472 ACFSPEFFDKGRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVA 531

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG-LIEEGKK-HFSS 480
           WN +IGGY ++   +KAL AF+ +  EG   + IT V VLSAC   G L+E GK  H   
Sbjct: 532 WNALIGGYAENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHAYI 591

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +   +     +K+   +I +  + G  +  ++         + + W  +L A + HG+  
Sbjct: 592 VSAGFESDEHVKN--SLITMYAKCGDLSSSQDLFNGLD-NRSIITWNAILAANAHHGH-- 646

Query: 541 LDEKDAEKLLELEPKMES 558
                 E++L+L  KM S
Sbjct: 647 -----GEEVLKLVSKMRS 659



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 115/417 (27%), Positives = 205/417 (49%), Gaps = 1/417 (0%)

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           GF+       G+ +HA+ ++    L    + +L++MY+K G    A  +F ++   + V+
Sbjct: 67  GFSQITRETTGRALHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEVS 126

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ-RCGESIHAVI 178
           W  +++ + + G   E  + F  M +  +KP+ FV+ SLV A   +G   R G  +H  +
Sbjct: 127 WNTMMSGIVRVGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFV 186

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K G  SD  V  A++ +Y   G VS   +VFE +  ++ VSW +L   + D   P++ +
Sbjct: 187 AKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVI 246

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            I+  M  +G + N  +  +++ +C  L D   G+Q+    IK  L+    V  SL+ M+
Sbjct: 247 DIYKSMRGEGVECNENSMSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAVENSLISMF 306

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
              G ++ A   F+ ++ +D  ++ +I+ +YAQ G  E + + F  MR    + N  T++
Sbjct: 307 GNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVS 366

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           + L+    V     GR +H + VK G    + V   L+ MYA  G  ++A+ VFK    +
Sbjct: 367 TLLSVLGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTK 426

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           D  SWN ++  +V  G    AL     M+  G   + +TF   L+AC      ++G+
Sbjct: 427 DLISWNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKGR 483



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 359 SCLN--GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
           SC +  G S +     GR LH++ VK    L +  +  L+ MY K G +  A  +F    
Sbjct: 61  SCFDQTGFSQITRETTGRALHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARYLFDKMP 120

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG-LIEEG 474
           +R+  SWN M+ G V+ GL  + +E F+ M D G  P       +++AC   G +  EG
Sbjct: 121 VRNEVSWNTMMSGIVRVGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGRSGSMFREG 179


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  360 bits (925), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 202/603 (33%), Positives = 328/603 (54%), Gaps = 7/603 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDM-EKKFSKFSLSTVLK 59
           + L++  F  +P+ +V +WN++++ Y  +G   + +  F  +  + E +   ++   VLK
Sbjct: 167 VSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLK 226

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
                G +  G+ +H  A +LG   + F++ SL+ MYS+ G    A  +F  +   D+ +
Sbjct: 227 A---CGTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGS 283

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W A+I+ L Q G   +A  + + MR   +K N   + S++    + GD      IH  + 
Sbjct: 284 WNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVI 343

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K+G E D  V NAL++MY + G +    + F+ +   D VSWN++ + ++  + P     
Sbjct: 344 KHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHG 403

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS-LDGNHVVGTSLVDMY 298
            F +M L GF+P++ T + +    +   D    + +H   ++   L  + V+G ++VDMY
Sbjct: 404 FFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMY 463

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR-LEGIKSNEFTL 357
            K G L+ A   F+ +  KD+ ++  +IT YAQ G A  A++ ++ M   + I  N+ T 
Sbjct: 464 AKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTW 523

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
            S L   + V  L  G  +H   +KT   LD+FV+T L+ +Y KCG + DA ++F     
Sbjct: 524 VSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQ 583

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
             + +WN +I  +  HG  EK L+ F  MLDEG  PD +TFV +LSACSH G +EEGK  
Sbjct: 584 ESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWC 643

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F  +++ YGI P++KH+ CM+D+LGRAG       FI +  L P+A +W  LLGAC  HG
Sbjct: 644 FRLMQE-YGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHG 702

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           NIEL +  +++L E++ K    YV  S+I A  G+W     VR+L   +G+KK P  S I
Sbjct: 703 NIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTI 762

Query: 598 EVD 600
           EV+
Sbjct: 763 EVN 765



 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 145/511 (28%), Positives = 251/511 (49%), Gaps = 17/511 (3%)

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           F +S      + +HA+ +  G     F+S  LV++Y+  G    +   F +I   DV  W
Sbjct: 126 FDSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTW 185

Query: 121 GAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            ++I+     G   EA   F  L+  S ++P+ +    +++A     D   G  IH    
Sbjct: 186 NSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRRIHCWAF 242

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K GF+ +  V  +L+ MY   G       +F+ +  +D  SWNA+ S      +  Q L 
Sbjct: 243 KLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALD 302

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +  +M L+G K N  T + IL  C  L D+     +H + IKH L+ +  V  +L++MY 
Sbjct: 303 VLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYA 362

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G LEDA  AF  +   D+ ++ +II +Y Q  +   A   F KM+L G + +  TL S
Sbjct: 363 KFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVS 422

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLL-DMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
             +  +      N R +H   ++ G L+ D+ +  A+V MYAK G +D A  VF+   ++
Sbjct: 423 LASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVK 482

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLD-EGYVPDEITFVVVLSACSHMGLIEEGKK- 476
           D  SWN +I GY ++GL  +A+E ++MM + +  +P++ T+V +L A +H+G +++G + 
Sbjct: 483 DVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRI 542

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
           H   IK    +   +    C+ID+ G+ G+  +  +   +     +++ W  ++     H
Sbjct: 543 HGRVIKTNLHLDVFVA--TCLIDVYGKCGRLVDAMSLFYQVP-QESSVTWNAIISCHGIH 599

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           G+       AEK L+L  +M    V P  ++
Sbjct: 600 GH-------AEKTLKLFGEMLDEGVKPDHVT 623


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  360 bits (925), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 186/597 (31%), Positives = 334/597 (55%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF  M E + V WN +++GY ++G     + LF  M+    + +  +L+  L   A 
Sbjct: 200 ARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSAT 259

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G  +H +A++ G   +  ++ +LV MY+KC   D+  K+F  +   D+V W  +
Sbjct: 260 ESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGM 319

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   Q G   +A  +F  M++S ++P+   L SL+ A T+      G+ +H  I +   
Sbjct: 320 ISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCV 379

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D  + +ALV +Y +   V     V+++    D V  + + S +       + +++F  
Sbjct: 380 HMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRY 439

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           +L +G +PN      +L AC+S++ +  G++LH++ +K++ +G   V ++L+DMY K G 
Sbjct: 440 LLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGR 499

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L+ +   F  ++ KD   + ++I+S+AQ GE E AL  FR+M +EG+K +  T++S L+ 
Sbjct: 500 LDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSA 559

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +  +  G+ +H + +K     D+F  +AL+ MY KCG+++ A  VF+    ++  SW
Sbjct: 560 CASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSW 619

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I  Y  +GL ++++   R M +EG+  D +TF+ ++SAC+H G ++EG + F  + +
Sbjct: 620 NSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTE 679

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            Y I P ++HFACM+D+  RAGK  +    I +    P+A +W  LL AC  H N+EL E
Sbjct: 680 EYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHRNVELAE 739

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
             +++L +L+P     YV  S+I+A  GRW+  S VR L+    ++K P  SW++V+
Sbjct: 740 IASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDTKVQKIPGYSWVDVN 796



 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 159/543 (29%), Positives = 266/543 (48%), Gaps = 9/543 (1%)

Query: 4   AKRVFKSMPE---LNVVSWNALLNGYAESGDGQKVMHLFCSM--KDMEKKFSKFSLSTVL 58
           A  VF S+P       + WN L+ G   +GD +  +  +  M            +   V+
Sbjct: 94  AVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVV 153

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
           K  A  G I  G++VH  A  LG   D F+  +L+ MY+  GL  +A +VF  + + D V
Sbjct: 154 KSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCV 213

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            W  ++    + G    A ++F  MR S  +PN   L   +  +    D   G  +H + 
Sbjct: 214 LWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLA 273

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            KYG ES+  V N LVSMY +   +  G ++F  +   D V+WN + S        DQ L
Sbjct: 274 VKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQAL 333

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            +F  M   G +P+  T + +L A + L+    GK+LH + +++ +  +  + ++LVD+Y
Sbjct: 334 LLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIY 393

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K   +  A   +DS    D+   + +I+ Y   G ++ A+K FR +  +GI+ N   +A
Sbjct: 394 FKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIA 453

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L  C+ +A +  G+ LHS A+K  +    +V +AL+ MYAKCG +D +  +F   + +
Sbjct: 454 SVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAK 513

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-H 477
           D  +WN MI  + ++G  E+AL  FR M  EG     +T   VLSAC+ +  I  GK+ H
Sbjct: 514 DEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIH 573

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
              IK    I   +   + +ID+ G+ G   E  + + E+    N + W +++ +   +G
Sbjct: 574 GVVIKG--PIRADLFAESALIDMYGKCGNL-EWAHRVFESMPEKNEVSWNSIIASYGAYG 630

Query: 538 NIE 540
            ++
Sbjct: 631 LVK 633



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 132/494 (26%), Positives = 232/494 (46%), Gaps = 10/494 (2%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGC-ALDKFLSCSLVDMYSKCGLADNALKVFYRI 112
           L  VL+G  +  ++  G  VH  A+  G  A D  L   LV MY       +A+ VF  +
Sbjct: 42  LLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSL 101

Query: 113 KDPD---VVAWGAIITCLDQQGCCQEAAKIFNLM--RESSVKPNQFVLTSLVRATTETGD 167
                   + W  +I  L   G  + A   +  M    S+  P+      +V++    G 
Sbjct: 102 PRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGA 161

Query: 168 QRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR 227
              G  +H      G + D  VG+AL+ MY   G +    +VF+ +A +D V WN +   
Sbjct: 162 IALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDG 221

Query: 228 FQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGN 287
           +    S    + +F  M   G +PN  T    L   ++ SD+ FG QLH   +K+ L+  
Sbjct: 222 YVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESE 281

Query: 288 HVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL 347
             V  +LV MY K  CL+D    F  +   DL  +  +I+   Q G  + AL  F  M+ 
Sbjct: 282 VAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQK 341

Query: 348 EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
            GI+ +  TL S L   + +     G+ LH   V+    +D+F+ +ALV +Y KC ++  
Sbjct: 342 SGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRM 401

Query: 408 AEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
           A++V+  S   D    + MI GYV +G+ ++A++ FR +L++G  P+ +    VL AC+ 
Sbjct: 402 AQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACAS 461

Query: 468 MGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVW 526
           M  ++ G++ H  ++K  Y     ++  + ++D+  + G+  ++ ++I       + + W
Sbjct: 462 MAAMKLGQELHSYALKNAYEGRCYVE--SALMDMYAKCGRL-DLSHYIFSKISAKDEVTW 518

Query: 527 ENLLGACSWHGNIE 540
            +++ + + +G  E
Sbjct: 519 NSMISSFAQNGEPE 532



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 160/308 (51%), Gaps = 1/308 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + +A+ V+ S   ++VV  + +++GY  +G  Q+ + +F  + +   + +  ++++VL  
Sbjct: 399 VRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPA 458

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+   +K GQ +H+ A++       ++  +L+DMY+KCG  D +  +F +I   D V W
Sbjct: 459 CASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTW 518

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I+   Q G  +EA  +F  M    VK +   ++S++ A         G+ IH V+ K
Sbjct: 519 NSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIK 578

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
               +D    +AL+ MY + G + +  RVFE++  ++ VSWN++ + +  Y    + + +
Sbjct: 579 GPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSL 638

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL-HAHTIKHSLDGNHVVGTSLVDMYD 299
              M  +GFK +  TF+ ++ AC+    V  G +L    T ++ +         +VD+Y 
Sbjct: 639 LRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYS 698

Query: 300 KSGCLEDA 307
           ++G L+ A
Sbjct: 699 RAGKLDKA 706


>gi|297596789|ref|NP_001043072.2| Os01g0374200 [Oryza sativa Japonica Group]
 gi|255673241|dbj|BAF04986.2| Os01g0374200 [Oryza sativa Japonica Group]
          Length = 629

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 191/529 (36%), Positives = 301/529 (56%), Gaps = 2/529 (0%)

Query: 74  HAMAIRLGCALDKFLSC-SLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           HA+A ++  A+     C SL++MY K G+  +A +VF  +   +  +W  ++     + C
Sbjct: 34  HALACKIPSAVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKC 93

Query: 133 CQEAAKIFNLM-RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGN 191
            +EA  +F LM  E   + ++FV T+++ A +       GE +H +I K G      V N
Sbjct: 94  SEEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVEN 153

Query: 192 ALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKP 251
           +LV+MY + G +     VFE+   ++S++W+A+ + +      D  + +F QM   GF P
Sbjct: 154 SLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTP 213

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF 311
              TF+ +L A S L  +  GKQ H   +K   +    V ++LVDMY K GC+ DA   F
Sbjct: 214 TEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGF 273

Query: 312 DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLA 371
           D L   D+  +TA+++ + Q GE E AL  + +M  EGI  ++ T+AS L  C+ +A L 
Sbjct: 274 DQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALE 333

Query: 372 NGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV 431
            G+ LH+  VK G  L   V +AL  MY+KCG+++D  +VF+    RD  +WN +I G+ 
Sbjct: 334 PGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFS 393

Query: 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI 491
           ++G G  AL+ F  M  EG +PD ITF+ +L ACSHMGL++ G ++FS + K YG+TP +
Sbjct: 394 QNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRL 453

Query: 492 KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551
            H+ACM+DIL RAG   E ++FI    +     +W  +LGAC    + ++     E+L+E
Sbjct: 454 DHYACMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLME 513

Query: 552 LEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           L     S Y+  S+I A+Q +WND   VR L+  +G+ K+P CSW+E++
Sbjct: 514 LGTGDSSAYILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVELN 562



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 121/432 (28%), Positives = 212/432 (49%), Gaps = 11/432 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLKGFA 62
           A+RVF  MP+ N  SW+ ++ GYA     ++   LF  M ++   + S+F  + VL   +
Sbjct: 66  ARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAVLSAVS 125

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSC--SLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
               +  G+ +H + ++ G  L  F+S   SLV MY+K G    A  VF   ++ + + W
Sbjct: 126 VPLGLLMGEQMHGLIVKDG--LLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITW 183

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+IT   Q G    A  +F+ M  +   P +F    ++ A+++ G    G+  H ++ K
Sbjct: 184 SAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVK 243

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GFE    V +ALV MY + G ++     F+ +   D V W A+ S        ++ L +
Sbjct: 244 LGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTL 303

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           + +M  +G  P+  T    L+AC+ ++ +  GKQLH   +K+ L     VG++L  MY K
Sbjct: 304 YARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSK 363

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G LED    F  + ++D+ A+ +II+ ++Q G    AL  F +M++EG   +  T  + 
Sbjct: 364 CGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINI 423

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHL---LDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           L  CS +  +  G    S+  K   L   LD +    +V + ++ G + +A+   +   +
Sbjct: 424 LCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHY--ACMVDILSRAGMLKEAKDFIESITI 481

Query: 418 -RDTASWNMMIG 428
              T  W +++G
Sbjct: 482 DHGTCLWRIVLG 493



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 161/308 (52%), Gaps = 1/308 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A  VF+S  E N ++W+A++ GYA++G+    + +F  M       ++F+   VL  
Sbjct: 165 MGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNA 224

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ++ G +  G+  H + ++LG  +  ++  +LVDMY+KCG   +A + F ++ + D+V W
Sbjct: 225 SSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLW 284

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+++   Q G  +EA  ++  M +  + P++  + S +RA         G+ +H  I K
Sbjct: 285 TAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVK 344

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           YG      VG+AL +MY + G +  G  VF  I  +D ++WN++ S F      +  L +
Sbjct: 345 YGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDL 404

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK-HSLDGNHVVGTSLVDMYD 299
           F +M ++G  P+  TFI IL ACS +  V  G +  +   K + L         +VD+  
Sbjct: 405 FEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILS 464

Query: 300 KSGCLEDA 307
           ++G L++A
Sbjct: 465 RAGMLKEA 472


>gi|297818116|ref|XP_002876941.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322779|gb|EFH53200.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 652

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 195/599 (32%), Positives = 332/599 (55%), Gaps = 5/599 (0%)

Query: 6   RVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSG 65
           R+F  MP+ + VSWN +++GY   G  +    LF  MK        +S S +LKG A++ 
Sbjct: 2   RLFDEMPQRDSVSWNTMISGYTSCGKLENSWCLFTDMKRCGCYVDGYSFSRLLKGIASAK 61

Query: 66  YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT 125
               G+ VH + ++ G   + ++  SLVDMY+KC   ++A   F  I +P+ V+W A+I 
Sbjct: 62  RFDLGEQVHGLVVKGGYECNVYVGSSLVDMYAKCERVEDAFGAFMEILEPNSVSWNALIA 121

Query: 126 CLDQQGCCQEAAKIFNLMR-ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
              Q    + A  +  LM  +++V  +      L+    +       + +HA + K G E
Sbjct: 122 GFVQVRDTKTAFWLLGLMEMKAAVTMDDGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLE 181

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            +  + NA++S Y   G VS   RVF+ +   +D +SWN++ +    +E  +    +F +
Sbjct: 182 HEITICNAMISSYANCGLVSDAKRVFDGLGGSKDLISWNSMIAGLSKHEQKESAFELFTE 241

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK--S 301
           M     + ++ T+  I+ ACS      FGK LH   IK  L+    V  +L+ MY +  +
Sbjct: 242 MHRNWIETDIYTYTGIVSACSGEEHQSFGKSLHGLVIKKGLEQVTSVSNALISMYIQFPT 301

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G ++DA   F+SL  KDL ++ +I+T ++Q G +E A+K FR +R   I+ +++  ++ L
Sbjct: 302 GVMKDALSLFESLKPKDLVSWNSIMTGFSQNGLSEDAVKFFRYLRSSNIEVDDYAFSAVL 361

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG-SALRDT 420
             CS +ATL  G+  H++A K+    + FV+++L+ MY+KCG I++A   F+  S+  +T
Sbjct: 362 RSCSDLATLQLGQQTHALATKSSFESNEFVTSSLILMYSKCGVIENARKCFEQISSKHNT 421

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            +WN MI GY +HG G+ +L+ F  M ++    D +TF  +L+ACSH GLI+EG +  +S
Sbjct: 422 IAWNAMILGYAQHGSGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQEGLELLNS 481

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           ++ +Y I P ++H+A  +D+LGRAG   +++  I    L P+ +V +  LG C   G IE
Sbjct: 482 MEPVYKIQPRMEHYAAAVDLLGRAGLVNKVKELIESMPLNPDPMVLKTFLGVCRACGEIE 541

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +  + A  LLE+EP+    YV  S + +   +W + + V+ ++  +G+KK P  SWIE+
Sbjct: 542 MATQVANHLLEIEPEDHFAYVSLSHMYSDLKKWEEKANVKKMMKERGVKKVPGWSWIEI 600



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 104/438 (23%), Positives = 198/438 (45%), Gaps = 7/438 (1%)

Query: 106 LKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTET 165
           +++F  +   D V+W  +I+     G  + +  +F  M+      + +  + L++     
Sbjct: 1   MRLFDEMPQRDSVSWNTMISGYTSCGKLENSWCLFTDMKRCGCYVDGYSFSRLLKGIASA 60

Query: 166 GDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALF 225
                GE +H ++ K G+E +  VG++LV MY +  RV      F  I   +SVSWNAL 
Sbjct: 61  KRFDLGEQVHGLVVKGGYECNVYVGSSLVDMYAKCERVEDAFGAFMEILEPNSVSWNALI 120

Query: 226 SRFQDYESPDQGLRIFYQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL 284
           + F           +   M +K     +  TF  +L            KQ+HA  +K  L
Sbjct: 121 AGFVQVRDTKTAFWLLGLMEMKAAVTMDDGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGL 180

Query: 285 DGNHVVGTSLVDMYDKSGCLEDAGVAFDSL-ANKDLFAYTAIITSYAQAGEAEMALKCFR 343
           +    +  +++  Y   G + DA   FD L  +KDL ++ ++I   ++  + E A + F 
Sbjct: 181 EHEITICNAMISSYANCGLVSDAKRVFDGLGGSKDLISWNSMIAGLSKHEQKESAFELFT 240

Query: 344 KMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAK-- 401
           +M    I+++ +T    ++ CS     + G+ LH + +K G      VS AL++MY +  
Sbjct: 241 EMHRNWIETDIYTYTGIVSACSGEEHQSFGKSLHGLVIKKGLEQVTSVSNALISMYIQFP 300

Query: 402 CGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVV 461
            G + DA ++F+    +D  SWN ++ G+ ++GL E A++ FR +       D+  F  V
Sbjct: 301 TGVMKDALSLFESLKPKDLVSWNSIMTGFSQNGLSEDAVKFFRYLRSSNIEVDDYAFSAV 360

Query: 462 LSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLT 520
           L +CS +  ++ G++ H  + K  +     +   + +I +  + G          +    
Sbjct: 361 LRSCSDLATLQLGQQTHALATKSSFESNEFVT--SSLILMYSKCGVIENARKCFEQISSK 418

Query: 521 PNALVWENLLGACSWHGN 538
            N + W  ++   + HG+
Sbjct: 419 HNTIAWNAMILGYAQHGS 436



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 95/167 (56%), Gaps = 1/167 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A  +F+S+   ++VSWN+++ G++++G  +  +  F  ++    +   ++ S VL+ 
Sbjct: 304 MKDALSLFESLKPKDLVSWNSIMTGFSQNGLSEDAVKFFRYLRSSNIEVDDYAFSAVLRS 363

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP-DVVA 119
            ++   ++ GQ  HA+A +     ++F++ SL+ MYSKCG+ +NA K F +I    + +A
Sbjct: 364 CSDLATLQLGQQTHALATKSSFESNEFVTSSLILMYSKCGVIENARKCFEQISSKHNTIA 423

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
           W A+I    Q G  Q +  +F+ M   +VK +    T+++ A + TG
Sbjct: 424 WNAMILGYAQHGSGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTG 470


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 194/549 (35%), Positives = 303/549 (55%), Gaps = 3/549 (0%)

Query: 53  SLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI 112
           +L+ V++ +A +  ++ G+ +HA+ I  G     FL+  LV+MYSKCG  D+ALK+F  +
Sbjct: 7   ALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTM 66

Query: 113 KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172
              ++V+W A+I+ L Q     EA + F  MR     P QF  +S +RA    G    G+
Sbjct: 67  PQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGK 126

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
            +H +  K+G  S+  VG+ L  MY + G +    +VFE +  +D VSW A+   +    
Sbjct: 127 QMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIG 186

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
             ++ L  F +M+ +    +       L AC +L    FG+ +H+  +K   + +  VG 
Sbjct: 187 EFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGN 246

Query: 293 SLVDMYDKSGCLEDAGVAF--DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
           +L DMY K+G +E A   F  DS   +++ +YT +I  Y +  + E  L  F ++R +GI
Sbjct: 247 ALTDMYSKAGDMESASNVFGIDSEC-RNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGI 305

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
           + NEFT +S +  C+  A L  G  LH+  +K     D FVS+ LV MY KCG ++ A  
Sbjct: 306 EPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQ 365

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
            F         +WN ++  + +HGLG+ A++ F  M+D G  P+ ITF+ +L+ CSH GL
Sbjct: 366 AFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAGL 425

Query: 471 IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
           +EEG  +F S+ K YG+ P  +H++C+ID+LGRAG+  E + FI      PNA  W + L
Sbjct: 426 VEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFL 485

Query: 531 GACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKK 590
           GAC  HG+ E+ +  AEKL++LEPK     V  S+I A + +W D   VR  +    +KK
Sbjct: 486 GACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKK 545

Query: 591 EPSCSWIEV 599
            P  SW++V
Sbjct: 546 LPGYSWVDV 554



 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 124/374 (33%), Positives = 208/374 (55%), Gaps = 1/374 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A ++F +MP+ N+VSW A+++G +++    + +  FC M+   +  ++F+ S+ ++ 
Sbjct: 56  LDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRA 115

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+ G I+ G+ +H +A++ G   + F+  +L DMYSKCG   +A KVF  +   D V+W
Sbjct: 116 CASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSW 175

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    + G  +EA   F  M +  V  +Q VL S + A       + G S+H+ + K
Sbjct: 176 TAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVK 235

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH-QDSVSWNALFSRFQDYESPDQGLR 239
            GFESD  VGNAL  MY + G +   S VF   +  ++ VS+  L   + + E  ++GL 
Sbjct: 236 LGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLS 295

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F ++  +G +PN  TF  ++KAC++ + +  G QLHA  +K + D +  V + LVDMY 
Sbjct: 296 VFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYG 355

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G LE A  AFD + +    A+ ++++ + Q G  + A+K F +M   G+K N  T  S
Sbjct: 356 KCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFIS 415

Query: 360 CLNGCSPVATLANG 373
            L GCS    +  G
Sbjct: 416 LLTGCSHAGLVEEG 429


>gi|449475590|ref|XP_004154496.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g09040, mitochondrial-like [Cucumis sativus]
          Length = 974

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 209/601 (34%), Positives = 331/601 (55%), Gaps = 4/601 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ AK+VF S+ E N+V WNA+L G+A++G  Q+VM  F  MK    +  +F+ +++   
Sbjct: 360 MDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSA 419

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+  Y+  G  +H + I+   A + F++ +LVDMY+K G    A K F  +K  D V+W
Sbjct: 420 CASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSW 479

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            AII    Q+    EA  +F  M  + V P++  L S+V A     + + G+  H ++ K
Sbjct: 480 NAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVK 539

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G ++ T  G++L+ MY++ G V     VF ++  ++ VS NAL + +      ++ + +
Sbjct: 540 VGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAGY-TMGHLEEAIHL 598

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS-LDGNHVVGTSLVDMYD 299
           F ++ + G KP   TF  +L  C     +  G+Q+H   +K   L  + +V  SL+ +Y 
Sbjct: 599 FQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCLYM 658

Query: 300 KSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            S    D+   F  L   K L  +TA+I+ YAQ    E AL+ ++ MR + I  ++   A
Sbjct: 659 NSQRFVDSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQAAFA 718

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L  C+ +++L NG+ +HS+   TG  +D    ++L+ MYAKCG +  +  VF+    R
Sbjct: 719 SVLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRR 778

Query: 419 DTA-SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           +   SWN MI G  K+G  E+ALE F+ M  +  +PDE+TF+ VLSACSH G + EG+K 
Sbjct: 779 NNVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHAGRVSEGRKV 838

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F  +   Y + P + H  CM+DILGR G   E E FI +     + ++W  LLGAC  HG
Sbjct: 839 FDLMVNNYKLQPRVDHLGCMVDILGRWGFLNEAEEFINKLGCKADPMLWSTLLGACRKHG 898

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           +    ++ A+KL+EL+P+  S+YV  S I A    W+    +R  +  +G+KK P  SWI
Sbjct: 899 DEVRGKRAADKLMELKPQSSSSYVLLSSIYAESENWSGAVSLRREMKLKGVKKLPGYSWI 958

Query: 598 E 598
           E
Sbjct: 959 E 959



 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 160/568 (28%), Positives = 284/568 (50%), Gaps = 15/568 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F  +P  NVV+WN +++G+A+ G  ++ +  F  +K    K ++ SL +VL   A+
Sbjct: 262 ARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIAS 321

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G +VHA A + G   + ++  +LV+MY+KC   D A +VF  + + ++V W A+
Sbjct: 322 LSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAM 381

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    Q G  QE  + F+ M+    +P++F  TS+  A         G  +H V+ K  F
Sbjct: 382 LGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKF 441

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            S+  V NALV MY ++G +    + FE +   D+VSWNA+   +   E  D+   +F +
Sbjct: 442 ASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRR 501

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M+  G  P+  +   I+ AC+++ ++  G+Q H   +K  LD +   G+SL+DMY K G 
Sbjct: 502 MVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGV 561

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +  A   F S+ ++++ +  A+I  Y   G  E A+  F+++++ G+K  E T A  L+G
Sbjct: 562 VLAARDVFYSMPSRNVVSVNALIAGYTM-GHLEEAIHLFQEIQMVGLKPTEVTFAGLLDG 620

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDM-FVSTALVAMYAKCGSIDDAEAVFKG-SALRDTA 421
           C     L  GR +H   +K G L     V  +L+ +Y       D+E +F      +   
Sbjct: 621 CDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLV 680

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
            W  +I GY +    EKAL+ ++ M  +  +PD+  F  VL AC+ M  ++ G++  S  
Sbjct: 681 VWTALISGYAQQNHHEKALQFYQHMRSDNILPDQAAFASVLRACAGMSSLQNGQEIHS-- 738

Query: 482 KKIYGITPTIKHFAC--MIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
             I+     +    C  +ID+  + G          E     N + W +++   + +G  
Sbjct: 739 -LIFHTGFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRRNNVISWNSMIVGLAKNGY- 796

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDIS 567
                 AE+ LE+  +ME   + P +++
Sbjct: 797 ------AEEALEIFKQMEQQSIIPDEVT 818



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 135/505 (26%), Positives = 249/505 (49%), Gaps = 36/505 (7%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A++ F  + + +V +WN++L+ Y + G    V+  F  M + E + ++F+ + VL  
Sbjct: 92  VDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSA 151

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    +  G+ VH    + G     F    L+DMY+KC    +A  VF    + D V+W
Sbjct: 152 CSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDARLVFDGALNLDTVSW 211

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    + G   EA K+F+ M+     P+Q  L ++V A                   
Sbjct: 212 TALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVVNA------------------- 252

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
                           Y+  GR++   ++F  I + + V+WN + S        ++ +  
Sbjct: 253 ----------------YVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISF 296

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F ++   G K    +   +L A +SLS + +G  +HA   K  LD N  VG++LV+MY K
Sbjct: 297 FLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAK 356

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
              ++ A   F+SL  +++  + A++  +AQ G A+  ++ F  M+  G + +EFT  S 
Sbjct: 357 CSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSI 416

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
            + C+ +  L  G  LH++ +K     ++FV+ ALV MYAK G++ +A   F+   + D 
Sbjct: 417 FSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDN 476

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SWN +I GYV+    ++A   FR M+  G +PDE++   ++SAC+++  ++ G++    
Sbjct: 477 VSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCL 536

Query: 481 IKKIYGITPTIKHFACMIDILGRAG 505
           + K+ G+  +    + +ID+  + G
Sbjct: 537 LVKV-GLDTSTCAGSSLIDMYVKCG 560



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 158/585 (27%), Positives = 266/585 (45%), Gaps = 44/585 (7%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF     L+ VSW AL+ GY   G   + + +F  M+                    
Sbjct: 196 ARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQ-------------------- 235

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                          R+G A D+    ++V+ Y   G   +A K+F +I +P+VVAW  +
Sbjct: 236 ---------------RVGHAPDQITLVTVVNAYVALGRLADARKLFTQIPNPNVVAWNVM 280

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   ++G  +EA   F  ++++ +K  +  L S++ A         G  +HA   K G 
Sbjct: 281 ISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGL 340

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           + +  VG+ALV+MY +  ++    +VF ++  ++ V WNA+   F       + +  F  
Sbjct: 341 DDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSC 400

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G +P+  TF  I  AC+SL  + FG QLH   IK+    N  V  +LVDMY KSG 
Sbjct: 401 MKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGA 460

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L++A   F+ +   D  ++ AII  Y Q    + A   FR+M   G+  +E +LAS ++ 
Sbjct: 461 LKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSA 520

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ V  L  G+  H + VK G        ++L+ MY KCG +  A  VF     R+  S 
Sbjct: 521 CANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSV 580

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I GY    L E+A+  F+ +   G  P E+TF  +L  C    ++  G++    + K
Sbjct: 581 NALIAGYTMGHL-EEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMK 639

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
              ++ +      ++ +   + +F + E   +E +     +VW  L+   +        +
Sbjct: 640 WGFLSSSEMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISGYA-------QQ 692

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGI 588
              EK L+    M S+ + P D +A        +G+ +L + Q I
Sbjct: 693 NHHEKALQFYQHMRSDNILP-DQAAFASVLRACAGMSSLQNGQEI 736



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 136/531 (25%), Positives = 241/531 (45%), Gaps = 57/531 (10%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +   +V+H+ ++++G  L   L   +VD+Y KCG  D A K F R++  DV AW ++++ 
Sbjct: 57  LSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSM 116

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
               G      + F  M    V+PN+F    ++ A +   D   G  +H  + K GF   
Sbjct: 117 YLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFR 176

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
           +     L+ MY +   +     VF+   + D+VSW AL + +     P + +++F +M  
Sbjct: 177 SFCQGGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQR 236

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
            G  P+  T + ++ A  +L                                   G L D
Sbjct: 237 VGHAPDQITLVTVVNAYVAL-----------------------------------GRLAD 261

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A   F  + N ++ A+  +I+ +A+ G AE A+  F +++  G+K+   +L S L+  + 
Sbjct: 262 ARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIAS 321

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           ++ L  G ++H+ A K G   +++V +ALV MYAKC  +D A+ VF     R+   WN M
Sbjct: 322 LSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAM 381

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE-EGKKHFSSIKKIY 485
           +GG+ ++GL ++ +E F  M   G  PDE TF  + SAC+ +  +   G+ H   IK  +
Sbjct: 382 LGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKF 441

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI--ELDE 543
                + +   ++D+  ++G   E        K+  N           SW+  I   + E
Sbjct: 442 ASNLFVAN--ALVDMYAKSGALKEARKQFELMKIHDNV----------SWNAIIVGYVQE 489

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSC 594
           +  ++   +  +M SN V P ++S         S V A  + Q +K+   C
Sbjct: 490 EYNDEAFFMFRRMVSNGVLPDEVSLA-------SIVSACANVQELKRGQQC 533



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 138/292 (47%), Gaps = 19/292 (6%)

Query: 243 QMLLKGFKPNMCTFIVILKAC--------------SSLSDVGFGKQLHAHTIKHSLDGNH 288
           Q L+K   P+     + L+ C                L  +   K +H+ ++K  +    
Sbjct: 17  QQLVKNLNPHSEFLQICLQHCWRIQAHNLFDEKPKPVLQALSTAKVIHSKSLKIGVGLKG 76

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
           ++G  +VD+Y K G ++ A  AF  L  KD+FA+ ++++ Y   G     ++ F  M   
Sbjct: 77  LLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNH 136

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
            ++ NEFT A  L+ CS +  +  GR +H    KTG     F    L+ MYAKC  + DA
Sbjct: 137 EVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDA 196

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
             VF G+   DT SW  +I GYV+ G   +A++ F  M   G+ PD+IT V V++A   +
Sbjct: 197 RLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVVNAYVAL 256

Query: 469 GLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLT 520
           G + + +K F+ I       P +  +  MI    + G   E  +F  E K T
Sbjct: 257 GRLADARKLFTQIP-----NPNVVAWNVMISGHAKRGFAEEAISFFLELKKT 303


>gi|413946224|gb|AFW78873.1| hypothetical protein ZEAMMB73_227843 [Zea mays]
          Length = 778

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 202/597 (33%), Positives = 318/597 (53%), Gaps = 6/597 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+RVF  MP  +VVSWN+L++    +G  +        M       +  SL ++L     
Sbjct: 173 ARRVFDEMPARDVVSWNSLVSALLTNGMLEDAKRAVVGMMRSGVPVNVASLVSILPACGT 232

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G  VH + ++ G      L  +LVDMY K G  ++++ VF  +++ + V+W + 
Sbjct: 233 ERDEGFGLCVHGLVLKFGLNSVVNLGNALVDMYGKFGDLESSMHVFNGMQEKNEVSWNSA 292

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I C    G  ++  ++F LM E  V P    L+SL+ A  + G    G+ +H    +   
Sbjct: 293 IGCFAHAGFHEDVLEMFRLMSEHDVTPGSVTLSSLLPALVDLGYFHLGKELHGYSIRRAV 352

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           ESD  + N L+ MY + G     S +FE I  ++ VSWNA+ +      +  +  R+  +
Sbjct: 353 ESDIFIANTLMDMYAKFGCSEKASAIFENIEVRNVVSWNAMIANLTQNGAEAEAFRLVIE 412

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G  PN  T + +L ACS ++ V  GKQ+HA +I+ SL  +  V  +L+D+Y K G 
Sbjct: 413 MQKNGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIRRSLMSDLFVSNALIDVYAKCGQ 472

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L  A   FD  + KD  +Y  +I  Y+Q+     +L  F++MRL GI+ +  +   CL+ 
Sbjct: 473 LNLARYIFDR-SEKDGVSYNTLIVGYSQSQCCFESLHLFQQMRLAGIEHDAVSFMGCLSA 531

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDM--FVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           CS ++    G+ +H + VK   LLD   F++ +L+ +Y K G +D A  +F     +D A
Sbjct: 532 CSNLSAFKQGKEIHGVLVK--RLLDSHPFLANSLLDVYTKGGMLDTASKIFNRITQKDVA 589

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SWN MI GY  HG  + A E F +M D+G   D ++++ VLS CSH GL++ GKK+FS +
Sbjct: 590 SWNTMILGYGMHGQIDVAFELFDLMKDDGIEYDHVSYIAVLSVCSHGGLVDRGKKYFSQM 649

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
                I P   H+ACM+D+LGRAG+ +E    I       N+ VW  LLG+C  HG+IEL
Sbjct: 650 IA-QNIKPQQMHYACMVDLLGRAGQLSESAEIIRNMPFRANSDVWGALLGSCRIHGDIEL 708

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
               AE L EL+P+    Y    ++ +  G WN+ +GV+ L+ S+ ++K P+ SW++
Sbjct: 709 ARLAAEHLFELKPENSGYYTLLRNMYSESGMWNEANGVKKLMKSRKVQKNPAYSWVQ 765



 Score =  219 bits (557), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 140/477 (29%), Positives = 244/477 (51%), Gaps = 12/477 (2%)

Query: 70  GQVVHAMAIRLGCAL-DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLD 128
           G  +HA A+R G  L D F   +LV  Y+ CG A +A +VF  +   DVV+W ++++ L 
Sbjct: 137 GAELHAAALRRGLLLADVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSALL 196

Query: 129 QQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTL 188
             G  ++A +    M  S V  N   L S++ A     D+  G  +H ++ K+G  S   
Sbjct: 197 TNGMLEDAKRAVVGMMRSGVPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLNSVVN 256

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG 248
           +GNALV MY + G +     VF  +  ++ VSWN+    F      +  L +F  M    
Sbjct: 257 LGNALVDMYGKFGDLESSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHD 316

Query: 249 FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
             P   T   +L A   L     GK+LH ++I+ +++ +  +  +L+DMY K GC E A 
Sbjct: 317 VTPGSVTLSSLLPALVDLGYFHLGKELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKAS 376

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
             F+++  +++ ++ A+I +  Q G    A +   +M+  G   N FTL + L  CS VA
Sbjct: 377 AIFENIEVRNVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVA 436

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
           ++  G+ +H+ +++   + D+FVS AL+ +YAKCG ++ A  +F  S  +D  S+N +I 
Sbjct: 437 SVKMGKQIHAWSIRRSLMSDLFVSNALIDVYAKCGQLNLARYIFDRSE-KDGVSYNTLIV 495

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGI 487
           GY +     ++L  F+ M   G   D ++F+  LSACS++   ++GK+ H   +K++   
Sbjct: 496 GYSQSQCCFESLHLFQQMRLAGIEHDAVSFMGCLSACSNLSAFKQGKEIHGVLVKRLLDS 555

Query: 488 TPTIKHFACMIDILGRAGKF---TEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
            P + +   ++D+  + G     ++I N IT+  +      W  ++     HG I++
Sbjct: 556 HPFLAN--SLLDVYTKGGMLDTASKIFNRITQKDVAS----WNTMILGYGMHGQIDV 606



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 120/435 (27%), Positives = 221/435 (50%), Gaps = 2/435 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E +  VF  M E N VSWN+ +  +A +G  + V+ +F  M + +      +LS++L  
Sbjct: 271 LESSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSVTLSSLLPA 330

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             + GY   G+ +H  +IR     D F++ +L+DMY+K G ++ A  +F  I+  +VV+W
Sbjct: 331 LVDLGYFHLGKELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKASAIFENIEVRNVVSW 390

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I  L Q G   EA ++   M+++   PN F L +L+ A +     + G+ IHA   +
Sbjct: 391 NAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIR 450

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
               SD  V NAL+ +Y + G+++    +F+  + +D VS+N L   +   +   + L +
Sbjct: 451 RSLMSDLFVSNALIDVYAKCGQLNLARYIFDR-SEKDGVSYNTLIVGYSQSQCCFESLHL 509

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QM L G + +  +F+  L ACS+LS    GK++H   +K  LD +  +  SL+D+Y K
Sbjct: 510 FQQMRLAGIEHDAVSFMGCLSACSNLSAFKQGKEIHGVLVKRLLDSHPFLANSLLDVYTK 569

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L+ A   F+ +  KD+ ++  +I  Y   G+ ++A + F  M+ +GI+ +  +  + 
Sbjct: 570 GGMLDTASKIFNRITQKDVASWNTMILGYGMHGQIDVAFELFDLMKDDGIEYDHVSYIAV 629

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-D 419
           L+ CS    +  G+   S  +             +V +  + G + ++  + +    R +
Sbjct: 630 LSVCSHGGLVDRGKKYFSQMIAQNIKPQQMHYACMVDLLGRAGQLSESAEIIRNMPFRAN 689

Query: 420 TASWNMMIGGYVKHG 434
           +  W  ++G    HG
Sbjct: 690 SDVWGALLGSCRIHG 704



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 114/397 (28%), Positives = 187/397 (47%), Gaps = 13/397 (3%)

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQ--FVLTSLVRATTETGDQRC-GESIHA 176
           W ++   L       EA +++N M  S V+P+   F       A     +    G  +HA
Sbjct: 83  WNSLSRALASAALPCEALRVYNRMVRSGVRPDDRTFPFALHAAAAVAQAEHPAKGAELHA 142

Query: 177 VICKYG-FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD 235
              + G   +D   GN LV+ Y   GR +   RVF+ +  +D VSWN+L S        +
Sbjct: 143 AALRRGLLLADVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSALLTNGMLE 202

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
              R    M+  G   N+ + + IL AC +  D GFG  +H   +K  L+    +G +LV
Sbjct: 203 DAKRAVVGMMRSGVPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLNSVVNLGNALV 262

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
           DMY K G LE +   F+ +  K+  ++ + I  +A AG  E  L+ FR M    +     
Sbjct: 263 DMYGKFGDLESSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSV 322

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
           TL+S L     +     G+ LH  +++     D+F++  L+ MYAK G  + A A+F+  
Sbjct: 323 TLSSLLPALVDLGYFHLGKELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKASAIFENI 382

Query: 416 ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD---EGYVPDEITFVVVLSACSHMGLIE 472
            +R+  SWN MI    ++G      EAFR++++    G  P+  T V +L ACS +  ++
Sbjct: 383 EVRNVVSWNAMIANLTQNG---AEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVASVK 439

Query: 473 EGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFT 508
            GK+ H  SI++   +   +     +ID+  + G+  
Sbjct: 440 MGKQIHAWSIRR--SLMSDLFVSNALIDVYAKCGQLN 474



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 141/322 (43%), Gaps = 8/322 (2%)

Query: 221 WNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTF---IVILKACSSLSDVGFGKQLHA 277
           WN+L         P + LR++ +M+  G +P+  TF   +    A +       G +LHA
Sbjct: 83  WNSLSRALASAALPCEALRVYNRMVRSGVRPDDRTFPFALHAAAAVAQAEHPAKGAELHA 142

Query: 278 HTIKHSLDGNHV-VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAE 336
             ++  L    V  G +LV  Y   G   DA   FD +  +D+ ++ +++++    G  E
Sbjct: 143 AALRRGLLLADVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSALLTNGMLE 202

Query: 337 MALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALV 396
            A +    M   G+  N  +L S L  C        G  +H + +K G    + +  ALV
Sbjct: 203 DAKRAVVGMMRSGVPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLNSVVNLGNALV 262

Query: 397 AMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI 456
            MY K G ++ +  VF G   ++  SWN  IG +   G  E  LE FR+M +    P  +
Sbjct: 263 DMYGKFGDLESSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSV 322

Query: 457 TFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFIT 515
           T   +L A   +G    GK+ H  SI++   +   I     ++D+  + G  +E  + I 
Sbjct: 323 TLSSLLPALVDLGYFHLGKELHGYSIRR--AVESDIFIANTLMDMYAKFG-CSEKASAIF 379

Query: 516 ETKLTPNALVWENLLGACSWHG 537
           E     N + W  ++   + +G
Sbjct: 380 ENIEVRNVVSWNAMIANLTQNG 401


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 198/589 (33%), Positives = 308/589 (52%), Gaps = 46/589 (7%)

Query: 52  FSLSTVLKGFANSGYIK-AGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFY 110
           F L+T++  +A  G ++ A +V   + +R     + F   +L+  Y++ G  D A  +F 
Sbjct: 53  FLLNTLVSTYARLGRLREARRVFDGIPLR-----NTFSYNALLSAYARLGRPDEARALFE 107

Query: 111 RIKDPDVVAWGAIITCLDQ--QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ 168
            I DPD  ++ A++  L +  +G   +A +    M       N +   S + A     D 
Sbjct: 108 AIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALSACAAEKDL 167

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228
           R GE +H ++ +     D  +G ALV MY +  R     RVF+A+  ++ VSWN+L + +
Sbjct: 168 RTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITCY 227

Query: 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS-LDGN 287
           +      + L +F +M+  GF P+  T   ++ AC+ L+    G+Q+HAH +K   L  +
Sbjct: 228 EQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDD 287

Query: 288 HVVGTSLVDMYDKSG------CL-------------------------EDAGVAFDSLAN 316
            V+  +LVDMY K G      C+                         EDA V F  +  
Sbjct: 288 MVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVE 347

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL 376
           K++ A+  +I +YAQ GE E A++ F +++ + I    +T  + LN C  +A L  G+  
Sbjct: 348 KNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQA 407

Query: 377 HSIAVKTGHLLD------MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGY 430
           H   +K G   D      +FV  +LV MY K GSIDD   VF+  A RD  SWN MI GY
Sbjct: 408 HVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGY 467

Query: 431 VKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT 490
            ++G  + AL  F  ML     PD +T + VLSAC H GL++EG++HF  + + +GITP+
Sbjct: 468 AQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPS 527

Query: 491 IKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLL 550
             H+ CM+D+LGRAG   E E  I +    P++++W +LLGAC  H N+EL E+ A +L 
Sbjct: 528 RDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRLHKNVELGERTAGRLF 587

Query: 551 ELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           EL+P+    YV  S++ A  G+W D   VR  +  +G+ K+P CSWIE+
Sbjct: 588 ELDPENSGPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSKQPGCSWIEI 636



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 125/480 (26%), Positives = 219/480 (45%), Gaps = 45/480 (9%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQ--KVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           A+ +F+++P+ +  S+NA++   A  G G     +    +M   +   + +S ++ L   
Sbjct: 102 ARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALSAC 161

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           A    ++ G+ VH +  R   A D  +  +LVDMY+KC    +A +VF  + + +VV+W 
Sbjct: 162 AAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWN 221

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           ++ITC +Q G   EA  +F  M  +   P++  L+S++ A      +R G  +HA + K 
Sbjct: 222 SLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKR 281

Query: 182 G-FESDTLVGNALVSMYMENGRV--------SYGSR-----------------------V 209
                D ++ NALV MY + GR         S  SR                       V
Sbjct: 282 DRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVV 341

Query: 210 FEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDV 269
           F  +  ++ ++WN L + +      ++ +R+F Q+      P   T+  +L AC +++ +
Sbjct: 342 FSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVL 401

Query: 270 GFGKQLHAHTIKHSL------DGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYT 323
             G+Q H H +K         + +  VG SLVDMY K+G ++D    F+ +A +D  ++ 
Sbjct: 402 QLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWN 461

Query: 324 AIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRL-LHSIAVK 382
           A+I  YAQ G A+ AL  F +M       +  T+   L+ C     +  GR   H +   
Sbjct: 462 AMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTED 521

Query: 383 TGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DTASWNMMIGGYVKHG---LGEK 438
            G        T +V +  + G + +AE + K      D+  W  ++G    H    LGE+
Sbjct: 522 HGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRLHKNVELGER 581



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 175/395 (44%), Gaps = 69/395 (17%)

Query: 155 LTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA 214
           L  L+R+       R   + H  + K     +T + N LVS Y   GR+    RVF+ I 
Sbjct: 23  LADLLRSAPSLPGAR---AAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIP 79

Query: 215 HQDSVSWNALFSR-------------FQDYESPDQ--------------------GLRIF 241
            +++ S+NAL S              F+    PDQ                     LR  
Sbjct: 80  LRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFL 139

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
             M    F  N  +F   L AC++  D+  G+Q+H    +     +  +GT+LVDMY K 
Sbjct: 140 AAMHADDFVLNAYSFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKC 199

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
               DA   FD++  +++ ++ ++IT Y Q G    AL  F +M   G   +E TL+S +
Sbjct: 200 ERPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVM 259

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLL-DMFVSTALVAMYAKCG----------------- 403
           + C+ +A    GR +H+  VK   L  DM ++ ALV MYAKCG                 
Sbjct: 260 SACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSV 319

Query: 404 --------------SIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDE 449
                         +++DA+ VF     ++  +WN++I  Y ++G  E+A+  F  +  +
Sbjct: 320 VSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRD 379

Query: 450 GYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKK 483
              P   T+  VL+AC ++ +++ G++ H   +K+
Sbjct: 380 SIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKE 414



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 127/294 (43%), Gaps = 20/294 (6%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ VF  M E NV++WN L+  YA++G+ ++ + LF  +K      + ++   VL  
Sbjct: 335 VEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNA 394

Query: 61  FANSGYIKAGQVVHAMAIR------LGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
             N   ++ GQ  H   ++       G   D F+  SLVDMY K G  D+  KVF R+  
Sbjct: 395 CGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAA 454

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES- 173
            D V+W A+I    Q G  ++A  +F  M  S+  P+   +  ++ A   +G    G   
Sbjct: 455 RDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRH 514

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-DSVSWNALFSRFQDYE 232
            H +   +G          +V +    G +     + + +  + DSV W +L    + ++
Sbjct: 515 FHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRLHK 574

Query: 233 SPDQGLRIFYQM------------LLKGFKPNMCTFIVILKACSSLSDVGFGKQ 274
           + + G R   ++            LL      M  +  + +   S+ D G  KQ
Sbjct: 575 NVELGERTAGRLFELDPENSGPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSKQ 628



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 11/120 (9%)

Query: 357 LASCLNGCSPVA-------TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           L + L   SP+A       +L   R  H   +K+    + F+   LV+ YA+ G + +A 
Sbjct: 13  LVAHLRASSPLADLLRSAPSLPGARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREAR 72

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
            VF G  LR+T S+N ++  Y + G  ++A   F  + D    PD+ ++  V++A +  G
Sbjct: 73  RVFDGIPLRNTFSYNALLSAYARLGRPDEARALFEAIPD----PDQCSYNAVVAALARHG 128


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 186/597 (31%), Positives = 334/597 (55%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF  M E + V WN +++GY ++G     + LF  M+    + +  +L+  L   A 
Sbjct: 200 ARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSAT 259

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G  +H +A++ G   +  ++ +LV MY+KC   D+  K+F  +   D+V W  +
Sbjct: 260 ESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGM 319

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   Q G   +A  +F  M++S ++P+   L SL+ A T+      G+ +H  I +   
Sbjct: 320 ISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCV 379

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D  + +ALV +Y +   V     V+++    D V  + + S +       + +++F  
Sbjct: 380 HMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRY 439

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           +L +G +PN      +L AC+S++ +  G++LH++ +K++ +G   V ++L+DMY K G 
Sbjct: 440 LLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGR 499

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L+ +   F  ++ KD   + ++I+S+AQ GE E AL  FR+M +EG+K +  T++S L+ 
Sbjct: 500 LDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSA 559

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +  +  G+ +H + +K     D+F  +AL+ MY KCG+++ A  VF+    ++  SW
Sbjct: 560 CASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSW 619

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I  Y  +GL ++++   R M +EG+  D +TF+ ++SAC+H G ++EG + F  + +
Sbjct: 620 NSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTE 679

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            Y I P ++HFACM+D+  RAGK  +    I +    P+A +W  LL AC  H N+EL E
Sbjct: 680 EYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHRNVELAE 739

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
             +++L +L+P     YV  S+I+A  GRW+  S VR L+    ++K P  SW++V+
Sbjct: 740 IASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDTKVQKIPGYSWVDVN 796



 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 159/543 (29%), Positives = 266/543 (48%), Gaps = 9/543 (1%)

Query: 4   AKRVFKSMPE---LNVVSWNALLNGYAESGDGQKVMHLFCSM--KDMEKKFSKFSLSTVL 58
           A  VF S+P       + WN L+ G   +GD +  +  +  M            +   V+
Sbjct: 94  AVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVV 153

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
           K  A  G I  G++VH  A  LG   D F+  +L+ MY+  GL  +A +VF  + + D V
Sbjct: 154 KSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCV 213

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            W  ++    + G    A ++F  MR S  +PN   L   +  +    D   G  +H + 
Sbjct: 214 LWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLA 273

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            KYG ES+  V N LVSMY +   +  G ++F  +   D V+WN + S        DQ L
Sbjct: 274 VKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQAL 333

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            +F  M   G +P+  T + +L A + L+    GK+LH + +++ +  +  + ++LVD+Y
Sbjct: 334 LLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIY 393

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K   +  A   +DS    D+   + +I+ Y   G ++ A+K FR +  +GI+ N   +A
Sbjct: 394 FKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIA 453

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L  C+ +A +  G+ LHS A+K  +    +V +AL+ MYAKCG +D +  +F   + +
Sbjct: 454 SVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAK 513

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-H 477
           D  +WN MI  + ++G  E+AL  FR M  EG     +T   VLSAC+ +  I  GK+ H
Sbjct: 514 DEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIH 573

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
              IK    I   +   + +ID+ G+ G   E  + + E+    N + W +++ +   +G
Sbjct: 574 GVVIKG--PIRADLFAESALIDMYGKCGNL-EWAHRVFESMPEKNEVSWNSIIASYGAYG 630

Query: 538 NIE 540
            ++
Sbjct: 631 LVK 633



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 132/494 (26%), Positives = 232/494 (46%), Gaps = 10/494 (2%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGC-ALDKFLSCSLVDMYSKCGLADNALKVFYRI 112
           L  VL+G  +  ++  G  VH  A+  G  A D  L   LV MY       +A+ VF  +
Sbjct: 42  LLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSL 101

Query: 113 KDPD---VVAWGAIITCLDQQGCCQEAAKIFNLM--RESSVKPNQFVLTSLVRATTETGD 167
                   + W  +I  L   G  + A   +  M    S+  P+      +V++    G 
Sbjct: 102 PRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGA 161

Query: 168 QRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR 227
              G  +H      G + D  VG+AL+ MY   G +    +VF+ +A +D V WN +   
Sbjct: 162 IALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDG 221

Query: 228 FQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGN 287
           +    S    + +F  M   G +PN  T    L   ++ SD+ FG QLH   +K+ L+  
Sbjct: 222 YVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESE 281

Query: 288 HVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL 347
             V  +LV MY K  CL+D    F  +   DL  +  +I+   Q G  + AL  F  M+ 
Sbjct: 282 VAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQK 341

Query: 348 EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
            GI+ +  TL S L   + +     G+ LH   V+    +D+F+ +ALV +Y KC ++  
Sbjct: 342 SGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRM 401

Query: 408 AEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
           A++V+  S   D    + MI GYV +G+ ++A++ FR +L++G  P+ +    VL AC+ 
Sbjct: 402 AQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACAS 461

Query: 468 MGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVW 526
           M  ++ G++ H  ++K  Y     ++  + ++D+  + G+  ++ ++I       + + W
Sbjct: 462 MAAMKLGQELHSYALKNAYEGRCYVE--SALMDMYAKCGRL-DLSHYIFSKISAKDEVTW 518

Query: 527 ENLLGACSWHGNIE 540
            +++ + + +G  E
Sbjct: 519 NSMISSFAQNGEPE 532



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 160/308 (51%), Gaps = 1/308 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + +A+ V+ S   ++VV  + +++GY  +G  Q+ + +F  + +   + +  ++++VL  
Sbjct: 399 VRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPA 458

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+   +K GQ +H+ A++       ++  +L+DMY+KCG  D +  +F +I   D V W
Sbjct: 459 CASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTW 518

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I+   Q G  +EA  +F  M    VK +   ++S++ A         G+ IH V+ K
Sbjct: 519 NSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIK 578

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
               +D    +AL+ MY + G + +  RVFE++  ++ VSWN++ + +  Y    + + +
Sbjct: 579 GPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSL 638

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL-HAHTIKHSLDGNHVVGTSLVDMYD 299
              M  +GFK +  TF+ ++ AC+    V  G +L    T ++ +         +VD+Y 
Sbjct: 639 LRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYS 698

Query: 300 KSGCLEDA 307
           ++G L+ A
Sbjct: 699 RAGKLDKA 706


>gi|449443954|ref|XP_004139740.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g09040, mitochondrial-like [Cucumis sativus]
          Length = 1441

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 209/601 (34%), Positives = 331/601 (55%), Gaps = 4/601 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ AK+VF S+ E N+V WNA+L G+A++G  Q+VM  F  MK    +  +F+ +++   
Sbjct: 360 MDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSA 419

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+  Y+  G  +H + I+   A + F++ +LVDMY+K G    A K F  +K  D V+W
Sbjct: 420 CASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSW 479

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            AII    Q+    EA  +F  M  + V P++  L S+V A     + + G+  H ++ K
Sbjct: 480 NAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVK 539

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G ++ T  G++L+ MY++ G V     VF ++  ++ VS NAL + +      ++ + +
Sbjct: 540 VGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAGYT-MGHLEEAIHL 598

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS-LDGNHVVGTSLVDMYD 299
           F ++ + G KP   TF  +L  C     +  G+Q+H   +K   L  + +V  SL+ +Y 
Sbjct: 599 FQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCLYM 658

Query: 300 KSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            S    D+   F  L   K L  +TA+I+ YAQ    E AL+ ++ MR + I  ++   A
Sbjct: 659 NSQRFVDSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQAAFA 718

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L  C+ +++L NG+ +HS+   TG  +D    ++L+ MYAKCG +  +  VF+    R
Sbjct: 719 SVLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRR 778

Query: 419 DTA-SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           +   SWN MI G  K+G  E+ALE F+ M  +  +PDE+TF+ VLSACSH G + EG+K 
Sbjct: 779 NNVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHAGRVSEGRKV 838

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F  +   Y + P + H  CM+DILGR G   E E FI +     + ++W  LLGAC  HG
Sbjct: 839 FDLMVNNYKLLPRVDHLGCMVDILGRWGFLNEAEEFINKLGCKADPMLWSTLLGACRKHG 898

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           +    ++ A+KL+EL+P+  S+YV  S I A    W+    +R  +  +G+KK P  SWI
Sbjct: 899 DEVRGKRAADKLMELKPQSSSSYVLLSSIYAESENWSGAVSLRREMKLKGVKKLPGYSWI 958

Query: 598 E 598
           E
Sbjct: 959 E 959



 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 160/568 (28%), Positives = 284/568 (50%), Gaps = 15/568 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F  +P  NVV+WN +++G+A+ G  ++ +  F  +K    K ++ SL +VL   A+
Sbjct: 262 ARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIAS 321

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G +VHA A + G   + ++  +LV+MY+KC   D A +VF  + + ++V W A+
Sbjct: 322 LSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAM 381

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    Q G  QE  + F+ M+    +P++F  TS+  A         G  +H V+ K  F
Sbjct: 382 LGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKF 441

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            S+  V NALV MY ++G +    + FE +   D+VSWNA+   +   E  D+   +F +
Sbjct: 442 ASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRR 501

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M+  G  P+  +   I+ AC+++ ++  G+Q H   +K  LD +   G+SL+DMY K G 
Sbjct: 502 MVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGV 561

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +  A   F S+ ++++ +  A+I  Y   G  E A+  F+++++ G+K  E T A  L+G
Sbjct: 562 VLAARDVFYSMPSRNVVSVNALIAGYTM-GHLEEAIHLFQEIQMVGLKPTEVTFAGLLDG 620

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDM-FVSTALVAMYAKCGSIDDAEAVFKG-SALRDTA 421
           C     L  GR +H   +K G L     V  +L+ +Y       D+E +F      +   
Sbjct: 621 CDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLV 680

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
            W  +I GY +    EKAL+ ++ M  +  +PD+  F  VL AC+ M  ++ G++  S  
Sbjct: 681 VWTALISGYAQQNHHEKALQFYQHMRSDNILPDQAAFASVLRACAGMSSLQNGQEIHS-- 738

Query: 482 KKIYGITPTIKHFAC--MIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
             I+     +    C  +ID+  + G          E     N + W +++   + +G  
Sbjct: 739 -LIFHTGFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRRNNVISWNSMIVGLAKNGY- 796

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDIS 567
                 AE+ LE+  +ME   + P +++
Sbjct: 797 ------AEEALEIFKQMEQQSIIPDEVT 818



 Score =  225 bits (573), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 130/476 (27%), Positives = 236/476 (49%), Gaps = 35/476 (7%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A++ F  + + +V +WN++L+ Y + G    V+  F  M + E + ++F+ + VL  
Sbjct: 92  VDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSA 151

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    +  G+ VH    + G     F    L+DMY+KC    +A  VF    + D V+W
Sbjct: 152 CSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDARLVFDGALNLDTVSW 211

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    + G   EA K+F+ M+     P+Q  L ++V A                   
Sbjct: 212 TALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVVNA------------------- 252

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
                           Y+  GR++   ++F  I + + V+WN + S        ++ +  
Sbjct: 253 ----------------YVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISF 296

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F ++   G K    +   +L A +SLS + +G  +HA   K  LD N  VG++LV+MY K
Sbjct: 297 FLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAK 356

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
              ++ A   F+SL  +++  + A++  +AQ G A+  ++ F  M+  G + +EFT  S 
Sbjct: 357 CSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSI 416

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
            + C+ +  L  G  LH++ +K     ++FV+ ALV MYAK G++ +A   F+   + D 
Sbjct: 417 FSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDN 476

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            SWN +I GYV+    ++A   FR M+  G +PDE++   ++SAC+++  ++ G++
Sbjct: 477 VSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQ 532



 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 152/560 (27%), Positives = 255/560 (45%), Gaps = 43/560 (7%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF     L+ VSW AL+ GY   G   + + +F  M+                    
Sbjct: 196 ARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQ-------------------- 235

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                          R+G A D+    ++V+ Y   G   +A K+F +I +P+VVAW  +
Sbjct: 236 ---------------RVGHAPDQITLVTVVNAYVALGRLADARKLFTQIPNPNVVAWNVM 280

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   ++G  +EA   F  ++++ +K  +  L S++ A         G  +HA   K G 
Sbjct: 281 ISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGL 340

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           + +  VG+ALV+MY +  ++    +VF ++  ++ V WNA+   F       + +  F  
Sbjct: 341 DDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSC 400

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G +P+  TF  I  AC+SL  + FG QLH   IK+    N  V  +LVDMY KSG 
Sbjct: 401 MKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGA 460

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L++A   F+ +   D  ++ AII  Y Q    + A   FR+M   G+  +E +LAS ++ 
Sbjct: 461 LKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSA 520

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ V  L  G+  H + VK G        ++L+ MY KCG +  A  VF     R+  S 
Sbjct: 521 CANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSV 580

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I GY    L E+A+  F+ +   G  P E+TF  +L  C    ++  G++    + K
Sbjct: 581 NALIAGYTMGHL-EEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMK 639

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
              ++ +      ++ +   + +F + E   +E +     +VW  L+   +        +
Sbjct: 640 WGFLSSSEMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISGYA-------QQ 692

Query: 544 KDAEKLLELEPKMESNYVFP 563
              EK L+    M S+ + P
Sbjct: 693 NHHEKALQFYQHMRSDNILP 712



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 136/531 (25%), Positives = 241/531 (45%), Gaps = 57/531 (10%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +   +V+H+ ++++G  L   L   +VD+Y KCG  D A K F R++  DV AW ++++ 
Sbjct: 57  LSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSM 116

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
               G      + F  M    V+PN+F    ++ A +   D   G  +H  + K GF   
Sbjct: 117 YLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFR 176

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
           +     L+ MY +   +     VF+   + D+VSW AL + +     P + +++F +M  
Sbjct: 177 SFCQGGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQR 236

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
            G  P+  T + ++ A  +L                                   G L D
Sbjct: 237 VGHAPDQITLVTVVNAYVAL-----------------------------------GRLAD 261

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A   F  + N ++ A+  +I+ +A+ G AE A+  F +++  G+K+   +L S L+  + 
Sbjct: 262 ARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIAS 321

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           ++ L  G ++H+ A K G   +++V +ALV MYAKC  +D A+ VF     R+   WN M
Sbjct: 322 LSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAM 381

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE-EGKKHFSSIKKIY 485
           +GG+ ++GL ++ +E F  M   G  PDE TF  + SAC+ +  +   G+ H   IK  +
Sbjct: 382 LGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKF 441

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI--ELDE 543
                + +   ++D+  ++G   E        K+  N           SW+  I   + E
Sbjct: 442 ASNLFVAN--ALVDMYAKSGALKEARKQFELMKIHDNV----------SWNAIIVGYVQE 489

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSC 594
           +  ++   +  +M SN V P ++S         S V A  + Q +K+   C
Sbjct: 490 EYNDEAFFMFRRMVSNGVLPDEVSLA-------SIVSACANVQELKRGQQC 533



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 138/292 (47%), Gaps = 19/292 (6%)

Query: 243 QMLLKGFKPNMCTFIVILKAC--------------SSLSDVGFGKQLHAHTIKHSLDGNH 288
           Q L+K   P+     + L+ C                L  +   K +H+ ++K  +    
Sbjct: 17  QQLVKNLNPHSEFLQICLQHCWRIQAHNLFDEKPKPVLQALSTAKVIHSKSLKIGVGLKG 76

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
           ++G  +VD+Y K G ++ A  AF  L  KD+FA+ ++++ Y   G     ++ F  M   
Sbjct: 77  LLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNH 136

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
            ++ NEFT A  L+ CS +  +  GR +H    KTG     F    L+ MYAKC  + DA
Sbjct: 137 EVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDA 196

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
             VF G+   DT SW  +I GYV+ G   +A++ F  M   G+ PD+IT V V++A   +
Sbjct: 197 RLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVVNAYVAL 256

Query: 469 GLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLT 520
           G + + +K F+ I       P +  +  MI    + G   E  +F  E K T
Sbjct: 257 GRLADARKLFTQIP-----NPNVVAWNVMISGHAKRGFAEEAISFFLELKKT 303


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 199/598 (33%), Positives = 319/598 (53%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R+F  MPE N VS+  L+ GYA  G+ ++ + LF  ++    + + F L+T+LK    
Sbjct: 101 ARRLFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVT 160

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                    +HA A +LG   + F+  +L+D YS CG   +A  VF  I   D V W A+
Sbjct: 161 MDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAM 220

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           ++C  +    + A   F+ MR +  KPN FVLTS ++A         G+ IH    K  +
Sbjct: 221 VSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLY 280

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           +++  VG AL+ MY + G +     +FE I H D + W+ L SR+      +Q   +F +
Sbjct: 281 DTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLR 340

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M+     PN  +   +L+AC++++ +  G+Q+H   IK   +    VG +L+DMY K   
Sbjct: 341 MMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRN 400

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +E++   F SL + +  ++  II  Y Q+G AE AL  F +MR   + S + T +S L  
Sbjct: 401 MENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRA 460

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+  +++ +   +HS+  K+    D  V  +L+  YAKCG I DA  VF+     D  SW
Sbjct: 461 CANTSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSW 520

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I  Y  HG    ALE F  M       +++TFV +LS C   GL+ +G   F+S+  
Sbjct: 521 NSIISAYALHGRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMM 580

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            + I P+++H+ C++ +LGRAG+ T+   FI +   TP+ +VW  LL +C  H N+ L  
Sbjct: 581 DHRIKPSMEHYTCIVRLLGRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGR 640

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
             AEK+L++EP  E+ YV  S++ A  G  ++ +  R  + + G+KKE   SW+E+ G
Sbjct: 641 YAAEKVLDIEPHDETTYVLLSNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKG 698



 Score =  238 bits (607), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 155/526 (29%), Positives = 268/526 (50%), Gaps = 19/526 (3%)

Query: 48  KFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLG--CALDKFLSCSLVDMYSKCGLADNA 105
           K   ++ +  L+     G  +AG+ VHA  ++ G    LD F +  L++ Y+K G    A
Sbjct: 42  KLDSYACARFLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATA 101

Query: 106 LKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRA--TT 163
            ++F  + + + V++  ++     +G  +EA ++F  ++    + N FVLT++++   T 
Sbjct: 102 RRLFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTM 161

Query: 164 ETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNA 223
           +     CG  IHA  CK G + +  VG AL+  Y   G V +   VF+ I  +D+V+W A
Sbjct: 162 DAPGLACG--IHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTA 219

Query: 224 LFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS 283
           + S + + + P+  L  F +M + GFKPN       LKA   LS    GK +H  ++K  
Sbjct: 220 MVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTL 279

Query: 284 LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFR 343
            D    VG +L+DMY K G +EDA   F+ + + D+  ++ +I+ YAQ+ + E A + F 
Sbjct: 280 YDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFL 339

Query: 344 KMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403
           +M    +  NEF+L+  L  C+ +A L  G  +H++A+K G+  ++FV  AL+ MYAKC 
Sbjct: 340 RMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCR 399

Query: 404 SIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           +++++  +F      +  SWN +I GY + G  E AL  F  M     +  ++TF  VL 
Sbjct: 400 NMENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLR 459

Query: 464 ACSHMGLIEEGKKHFSSIKKIYGITPTIKHFAC--MIDILGRAGKFTEIENFITETKLTP 521
           AC++   I+   +  S I+K      TI    C  +ID   + G F      + E+ +  
Sbjct: 460 ACANTSSIKHAVQIHSLIEKSTFNNDTI---VCNSLIDTYAKCG-FIRDALKVFESIVEC 515

Query: 522 NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           + + W +++ A + HG        A   LEL  +M  + +  +D++
Sbjct: 516 DVVSWNSIISAYALHGR-------ATNALELFDRMNKSDIKANDVT 554



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 96/312 (30%), Positives = 167/312 (53%), Gaps = 9/312 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  +F+ +P  +V+ W+ L++ YA+S   ++   +F  M       ++FSLS VL+ 
Sbjct: 300 IEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQA 359

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            AN  +++ G+ +H +AI+LG   + F+  +L+DMY+KC   +N+L++F  ++D + V+W
Sbjct: 360 CANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSW 419

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             II    Q G  ++A  +F+ MR + +   Q   +S++RA   T   +    IH++I K
Sbjct: 420 NTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEK 479

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             F +DT+V N+L+  Y + G +    +VFE+I   D VSWN++ S +  +      L +
Sbjct: 480 STFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATNALEL 539

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVG-----FGKQLHAHTIKHSLDGNHVVGTSLV 295
           F +M     K N  TF+ +L  C S   V      F   +  H IK S++      T +V
Sbjct: 540 FDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHY----TCIV 595

Query: 296 DMYDKSGCLEDA 307
            +  ++G L DA
Sbjct: 596 RLLGRAGRLTDA 607


>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
          Length = 1012

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 197/599 (32%), Positives = 321/599 (53%), Gaps = 2/599 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK-GFA 62
           A+R+F  MPE N+VS+  L+  +A+ GD +    LF  ++    + ++F L+T+LK   A
Sbjct: 115 ARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIA 174

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
                 AG V H+ A +LG   + F+   L+D YS C L  +A  VF  I   D V W A
Sbjct: 175 MDAAGLAGGV-HSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTA 233

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +++C  +  C + A ++F+ MR S  KPN F LTS+++A         G+ IH    K  
Sbjct: 234 MVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTL 293

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            +++  VG AL+ MY + G +      FE I + D +  + + SR+      +Q   +F 
Sbjct: 294 NDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFL 353

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +++     PN  +   +L+AC+++  + FGKQ+H H IK   + +  VG +L+D Y K  
Sbjct: 354 RLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCN 413

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            ++ +   F SL + +  ++  I+  ++Q+G  E AL  F +M+   +   + T +S L 
Sbjct: 414 DMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLR 473

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+  A++ +   +H    K+    D  +  +L+  YAKCG I DA  VF+    RD  S
Sbjct: 474 ACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIIS 533

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN +I GY  HG    ALE F  M       ++ITFV +LS CS  GL+  G   F S++
Sbjct: 534 WNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMR 593

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
             +GI P+++H+ C++ +LGRAG+  +   FI +    P+A+VW  LL +C  H N+ L 
Sbjct: 594 IDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALG 653

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
              AEK+LE+EP+ E+ YV  S++ A  G  +  + +R  + + G++K P  SW+E+ G
Sbjct: 654 RFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKG 712



 Score =  234 bits (598), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 154/521 (29%), Positives = 260/521 (49%), Gaps = 17/521 (3%)

Query: 52  FSLSTVLKGFANSGYIKAGQVVHAMAIRLGCA--LDKFLSCSLVDMYSKCGLADNALKVF 109
           F+ +  L+G    G  + G+ VH   +R G    LD F +  L++MY K G   +A ++F
Sbjct: 60  FACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLF 119

Query: 110 YRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
            R+ + ++V++  ++    Q+G  + AA +F  +R    + NQFVLT++++         
Sbjct: 120 DRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAG 179

Query: 170 CGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
               +H+   K G + +  VG+ L+  Y     VS    VF  I  +D+V W A+ S + 
Sbjct: 180 LAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYS 239

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
           + + P+   R+F +M + G KPN      +LKA   L  V  GK +H   IK   D    
Sbjct: 240 ENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPH 299

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           VG +L+DMY K G ++DA +AF+ +   D+   + +I+ YAQ+ + E A + F ++    
Sbjct: 300 VGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSS 359

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           +  NE++L+S L  C+ +  L  G+ +H+ A+K GH  D+FV  AL+  YAKC  +D + 
Sbjct: 360 VLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSL 419

Query: 410 AVFKGSALRDT--ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
            +F  S+LRD    SWN ++ G+ + GLGE+AL  F  M        ++T+  VL AC+ 
Sbjct: 420 KIF--SSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACAS 477

Query: 468 MGLIEE-GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVW 526
              I   G+ H S  K  +     I +   +ID   + G   +    + +  +  + + W
Sbjct: 478 TASIRHAGQIHCSIEKSTFNNDTVIGN--SLIDTYAKCGYIRDALK-VFQHLMERDIISW 534

Query: 527 ENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
             ++   + HG        A   LEL  +M  + V  +DI+
Sbjct: 535 NAIISGYALHGQ-------AADALELFDRMNKSNVESNDIT 568



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 119/228 (52%), Gaps = 2/228 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ + ++F S+ + N VSWN ++ G+++SG G++ + +FC M+  +   ++ + S+VL+ 
Sbjct: 415 MDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRA 474

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A++  I+    +H    +     D  +  SL+D Y+KCG   +ALKVF  + + D+++W
Sbjct: 475 CASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISW 534

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI-HAVIC 179
            AII+     G   +A ++F+ M +S+V+ N     +L+   + TG    G S+  ++  
Sbjct: 535 NAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRI 594

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDS-VSWNALFS 226
            +G +        +V +    GR++   +    I    S + W AL S
Sbjct: 595 DHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLS 642



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 2/112 (1%)

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL--LDMFVSTALVAMYAKCGSIDDAEA 410
           + F  A  L GC        GR +H   V+ G +  LD+F +  L+ MY K G +  A  
Sbjct: 58  DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARR 117

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVL 462
           +F     R+  S+  ++  + + G  E A   FR +  EG+  ++     +L
Sbjct: 118 LFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTML 169


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 200/631 (31%), Positives = 325/631 (51%), Gaps = 35/631 (5%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF  MP  +VV+WN+L + Y   G  QK +++F  M     K    ++S +L   ++
Sbjct: 195 AQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSD 254

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +K+G+ +H  A++ G   + F+S +LV++Y  C     A  VF  +   +V+ W ++
Sbjct: 255 LQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSL 314

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
            +C    G  Q+   +F  M  + VKP+   ++S++ A ++  D + G++IH    K+G 
Sbjct: 315 ASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGM 374

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D  V  ALV++Y     V     VF+ + H++ V+WN+L S + +   P +GL +F +
Sbjct: 375 VEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFRE 434

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M+L G KP++ T + IL ACS L D+  GK +H   ++H +  +  V  +L+ +Y K  C
Sbjct: 435 MVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVC 494

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSY---------------------------------- 329
           + +A V FD + ++++ ++  I+T+Y                                  
Sbjct: 495 VREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGG 554

Query: 330 -AQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLD 388
             +    E A++ FRKM+  G K +E T+ S L  CS    L  G+ +H    +     D
Sbjct: 555 CVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWD 614

Query: 389 MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
           +  + ALV MYAKCG +  +  VF    ++D  SWN MI     HG G++AL  F  ML 
Sbjct: 615 LARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLL 674

Query: 449 EGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFT 508
               PD  TF  VLSACSH  L+EEG + F+S+ + + + P  +H+ C++DI  RAG   
Sbjct: 675 SMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLE 734

Query: 509 EIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISA 568
           E   FI    + P A+ W+  L  C  + N+EL +  A+KL E++P   +NYV   +I  
Sbjct: 735 EAYGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFEIDPNGSANYVTLFNILV 794

Query: 569 TQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           T   W++ S +R L+  +GI K P CSW  V
Sbjct: 795 TAKLWSEASKIRKLMKERGITKTPGCSWFHV 825



 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 153/489 (31%), Positives = 263/489 (53%), Gaps = 1/489 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+RVF  +   +VV+WN+L   Y   G  Q+ +++F  M   + K +  ++S++L G
Sbjct: 91  VEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPG 150

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ++   +K+G+ +H   +R G   D F+S + V+ Y+KC     A  VF  +   DVV W
Sbjct: 151 CSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTW 210

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++ +C    G  Q+   +F  M    VKP+   ++ ++ A ++  D + G++IH    K
Sbjct: 211 NSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALK 270

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +G   +  V NALV++Y     V     VF+ + H++ ++WN+L S + +   P +GL +
Sbjct: 271 HGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNV 330

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M L G KP+      IL ACS L D+  GK +H   +KH +  +  V T+LV++Y  
Sbjct: 331 FREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYAN 390

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
             C+ +A   FD + ++++  + ++ + Y   G  +  L  FR+M L G+K +  T+ S 
Sbjct: 391 CLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSI 450

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L+ CS +  L +G+++H  AV+ G + D+FV  AL+++YAKC  + +A+ VF     R+ 
Sbjct: 451 LHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREV 510

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
           ASWN ++  Y  +   EK L  F  M  +    DEIT+ VV+  C     IEE  + F  
Sbjct: 511 ASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRK 570

Query: 481 IKKIYGITP 489
           ++ + G  P
Sbjct: 571 MQTM-GFKP 578



 Score =  248 bits (632), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 129/402 (32%), Positives = 212/402 (52%)

Query: 74  HAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCC 133
           H  A R G   D  +  + +  Y KC   + A +VF  +   DVV W ++  C    G  
Sbjct: 63  HDDATRCGVMSDVSIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFP 122

Query: 134 QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNAL 193
           Q+   +F  M  + VK N   ++S++   ++  D + G+ IH  + ++G   D  V +A 
Sbjct: 123 QQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAF 182

Query: 194 VSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
           V+ Y +   V     VF+ + H+D V+WN+L S + +   P +GL +F +M+L G KP+ 
Sbjct: 183 VNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDP 242

Query: 254 CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
            T   IL ACS L D+  GK +H   +KH +  N  V  +LV++Y+   C+ +A   FD 
Sbjct: 243 VTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDL 302

Query: 314 LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG 373
           + ++++  + ++ + Y   G  +  L  FR+M L G+K +   ++S L  CS +  L +G
Sbjct: 303 MPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSG 362

Query: 374 RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKH 433
           + +H  AVK G + D+FV TALV +YA C  + +A+ VF     R+  +WN +   YV  
Sbjct: 363 KTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNC 422

Query: 434 GLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           G  +K L  FR M+  G  PD +T + +L ACS +  ++ GK
Sbjct: 423 GFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGK 464



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 108/346 (31%), Positives = 180/346 (52%)

Query: 130 QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
            G   EA KI+   R   +KP++ V  ++ +A   + D    +  H    + G  SD  +
Sbjct: 18  HGLPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSI 77

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
           GNA +  Y +   V    RVF+ +  +D V+WN+L + + +   P QGL +F +M L   
Sbjct: 78  GNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKV 137

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
           K N  T   IL  CS L D+  GK++H   ++H +  +  V ++ V+ Y K  C+ +A  
Sbjct: 138 KANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQT 197

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369
            FD + ++D+  + ++ + Y   G  +  L  FR+M L+G+K +  T++  L+ CS +  
Sbjct: 198 VFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQD 257

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           L +G+ +H  A+K G + ++FVS ALV +Y  C  + +A+AVF     R+  +WN +   
Sbjct: 258 LKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASC 317

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           YV  G  +K L  FR M   G  PD +    +L ACS +  ++ GK
Sbjct: 318 YVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGK 363



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 61/144 (42%)

Query: 333 GEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS 392
           G    A+K +   R  GIK ++    +    C+        +  H  A + G + D+ + 
Sbjct: 19  GLPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIG 78

Query: 393 TALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV 452
            A +  Y KC  ++ A  VF     RD  +WN +   YV  G  ++ L  FR M      
Sbjct: 79  NAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVK 138

Query: 453 PDEITFVVVLSACSHMGLIEEGKK 476
            + +T   +L  CS +  ++ GK+
Sbjct: 139 ANPLTVSSILPGCSDLQDLKSGKE 162



 Score = 46.6 bits (109), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 2/126 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + L++ VF  MP  +V SWN ++      G+G++ + LF  M     K    + + VL  
Sbjct: 631 LSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSA 690

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            ++S  ++ G Q+ ++M+       +      +VD+YS+ G  + A     R+  +P  +
Sbjct: 691 CSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAI 750

Query: 119 AWGAII 124
           AW A +
Sbjct: 751 AWKAFL 756


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 197/599 (32%), Positives = 321/599 (53%), Gaps = 2/599 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK-GFA 62
           A+R+F  MPE N+VS+  L+  +A+ GD +    LF  ++    + ++F L+T+LK   A
Sbjct: 115 ARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIA 174

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
                 AG V H+ A +LG   + F+   L+D YS C L  +A  VF  I   D V W A
Sbjct: 175 MDAAGLAGGV-HSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTA 233

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +++C  +  C + A ++F+ MR S  KPN F LTS+++A         G+ IH    K  
Sbjct: 234 MVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTL 293

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            +++  VG AL+ MY + G +      FE I + D +  + + SR+      +Q   +F 
Sbjct: 294 NDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFL 353

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +++     PN  +   +L+AC+++  + FGKQ+H H IK   + +  VG +L+D Y K  
Sbjct: 354 RLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCN 413

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            ++ +   F SL + +  ++  I+  ++Q+G  E AL  F +M+   +   + T +S L 
Sbjct: 414 DMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLR 473

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+  A++ +   +H    K+    D  +  +L+  YAKCG I DA  VF+    RD  S
Sbjct: 474 ACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIIS 533

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN +I GY  HG    ALE F  M       ++ITFV +LS CS  GL+  G   F S++
Sbjct: 534 WNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMR 593

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
             +GI P+++H+ C++ +LGRAG+  +   FI +    P+A+VW  LL +C  H N+ L 
Sbjct: 594 IDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALG 653

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
              AEK+LE+EP+ E+ YV  S++ A  G  +  + +R  + + G++K P  SW+E+ G
Sbjct: 654 RFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKG 712



 Score =  235 bits (599), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 154/521 (29%), Positives = 260/521 (49%), Gaps = 17/521 (3%)

Query: 52  FSLSTVLKGFANSGYIKAGQVVHAMAIRLGCA--LDKFLSCSLVDMYSKCGLADNALKVF 109
           F+ +  L+G    G  + G+ VH   +R G    LD F +  L++MY K G   +A ++F
Sbjct: 60  FACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLF 119

Query: 110 YRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
            R+ + ++V++  ++    Q+G  + AA +F  +R    + NQFVLT++++         
Sbjct: 120 DRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAG 179

Query: 170 CGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
               +H+   K G + +  VG+ L+  Y     VS    VF  I  +D+V W A+ S + 
Sbjct: 180 LAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYS 239

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
           + + P+   R+F +M + G KPN      +LKA   L  V  GK +H   IK   D    
Sbjct: 240 ENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPH 299

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           VG +L+DMY K G ++DA +AF+ +   D+   + +I+ YAQ+ + E A + F ++    
Sbjct: 300 VGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSS 359

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           +  NE++L+S L  C+ +  L  G+ +H+ A+K GH  D+FV  AL+  YAKC  +D + 
Sbjct: 360 VLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSL 419

Query: 410 AVFKGSALRDT--ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
            +F  S+LRD    SWN ++ G+ + GLGE+AL  F  M        ++T+  VL AC+ 
Sbjct: 420 KIF--SSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACAS 477

Query: 468 MGLIEE-GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVW 526
              I   G+ H S  K  +     I +   +ID   + G   +    + +  +  + + W
Sbjct: 478 TASIRHAGQIHCSIEKSTFNNDTVIGN--SLIDTYAKCGYIRDALK-VFQHLMERDIISW 534

Query: 527 ENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
             ++   + HG        A   LEL  +M  + V  +DI+
Sbjct: 535 NAIISGYALHGQ-------AADALELFDRMNKSNVESNDIT 568



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 119/228 (52%), Gaps = 2/228 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ + ++F S+ + N VSWN ++ G+++SG G++ + +FC M+  +   ++ + S+VL+ 
Sbjct: 415 MDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRA 474

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A++  I+    +H    +     D  +  SL+D Y+KCG   +ALKVF  + + D+++W
Sbjct: 475 CASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISW 534

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI-HAVIC 179
            AII+     G   +A ++F+ M +S+V+ N     +L+   + TG    G S+  ++  
Sbjct: 535 NAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRI 594

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDS-VSWNALFS 226
            +G +        +V +    GR++   +    I    S + W AL S
Sbjct: 595 DHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLS 642



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 2/112 (1%)

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL--LDMFVSTALVAMYAKCGSIDDAEA 410
           + F  A  L GC        GR +H   V+ G +  LD+F +  L+ MY K G +  A  
Sbjct: 58  DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARR 117

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVL 462
           +F     R+  S+  ++  + + G  E A   FR +  EG+  ++     +L
Sbjct: 118 LFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTML 169


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 199/617 (32%), Positives = 316/617 (51%), Gaps = 69/617 (11%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
            S +L   A S   +    VHA  I+   A + F+   L+D+Y KCG  D A K+F R+ 
Sbjct: 22  FSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDRML 81

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRE---------------------------- 145
           + ++ +W +II    + G   +A  IF  M +                            
Sbjct: 82  ERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQ 141

Query: 146 ---SSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGR 202
                   N++   S + A     D + G  IH+++ +  + SD  +G+ALV MY + GR
Sbjct: 142 MHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGR 201

Query: 203 VSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKA 262
           V Y   VF+ +  +  VSWN+L + ++     D+ L+IF +M+  G +P+  T   ++ A
Sbjct: 202 VEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSA 261

Query: 263 CSSLSDVGFGKQLHAHTIK-HSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFA 321
           C+++S +  G+Q+HA  +K      + ++G +L+DMY K   + +A + FD +  + + +
Sbjct: 262 CATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVS 321

Query: 322 YTAIITSYAQA-------------------------------GEAEMALKCFRKMRLEGI 350
            T++++ YA+A                               GE E AL  FR ++ E +
Sbjct: 322 ETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESV 381

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL------DMFVSTALVAMYAKCGS 404
               +T  + LN C+ +A L  GR  HS  +K G         D+FV  +L+ MY KCGS
Sbjct: 382 WPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGS 441

Query: 405 IDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
           +++   VF+    +D  SWN MI GY ++G G KALE F  ML+ G  PD +T + VL A
Sbjct: 442 VENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCA 501

Query: 465 CSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNAL 524
           CSH GL++EG+ +F S+   +G+ P   H+ CM+D+LGRAG   E +N I E  + P+A+
Sbjct: 502 CSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAI 561

Query: 525 VWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLS 584
           VW +LL AC  H NI+L E   +KLLE++P+    YV  S++ A    W +   VR L+ 
Sbjct: 562 VWGSLLAACKVHRNIQLGEYVVKKLLEVDPENSGPYVLLSNMYAENRDWKNVVRVRKLMR 621

Query: 585 SQGIKKEPSCSWIEVDG 601
            +G+ K+P CSWIE+ G
Sbjct: 622 QRGVVKQPGCSWIEIQG 638



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 133/485 (27%), Positives = 226/485 (46%), Gaps = 51/485 (10%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A  +F+ MP+++  SWN++++G+ + G   + +  F  M       +++S  + L   A 
Sbjct: 104 AVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAG 163

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +K G  +H++  R     D ++  +LVDMYSKCG  + A  VF  +     V+W ++
Sbjct: 164 LQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSL 223

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG- 182
           ITC +Q G   EA KIF  M +  V+P++  L S+V A       + G+ IHA + K   
Sbjct: 224 ITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDE 283

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-------------------------- 216
           F +D ++GNAL+ MY +  R++    +F+ +  +                          
Sbjct: 284 FRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFS 343

Query: 217 -----DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGF 271
                D ++WNAL +        ++ L +F  +  +   P   TF  +L AC++L+D+  
Sbjct: 344 NMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQL 403

Query: 272 GKQLHAHTIKHSL------DGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
           G+Q H+H +KH        D +  VG SL+DMY K G +E+    F  +  KD  ++ A+
Sbjct: 404 GRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAM 463

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR-LLHSIAVKTG 384
           I  YAQ G    AL+ F KM   G   +  T+   L  CS    L  GR    S+  + G
Sbjct: 464 IVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHG 523

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DTASW-----------NMMIGGYVK 432
            +      T +V +  + G +++A+ + +  +++ D   W           N+ +G YV 
Sbjct: 524 LMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAACKVHRNIQLGEYVV 583

Query: 433 HGLGE 437
             L E
Sbjct: 584 KKLLE 588



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 100/346 (28%), Positives = 162/346 (46%), Gaps = 39/346 (11%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ VF  M   + VSWN+L+  Y ++G   + + +F  M     +  + +L++V+  
Sbjct: 202 VEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSA 261

Query: 61  FANSGYIKAGQVVHAMAIRLG-CALDKFLSCSLVDMYSKCGLADNALKVF---------- 109
            A    IK GQ +HA  ++      D  L  +L+DMY+KC   + A  +F          
Sbjct: 262 CATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVS 321

Query: 110 ------------------YRIKD---PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSV 148
                             Y   +    DV+ W A+I    Q G  +EA  +F L++  SV
Sbjct: 322 ETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESV 381

Query: 149 KPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF------ESDTLVGNALVSMYMENGR 202
            P  +   +L+ A     D + G   H+ + K+GF      +SD  VGN+L+ MYM+ G 
Sbjct: 382 WPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGS 441

Query: 203 VSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKA 262
           V  G RVF+ +  +D VSWNA+   +      ++ L +F +ML  G  P+  T I +L A
Sbjct: 442 VENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCA 501

Query: 263 CSSLSDVGFGK-QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           CS    +  G+    + T +H L       T +VD+  ++G LE+A
Sbjct: 502 CSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEA 547


>gi|218187045|gb|EEC69472.1| hypothetical protein OsI_38669 [Oryza sativa Indica Group]
          Length = 1084

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 192/598 (32%), Positives = 314/598 (52%), Gaps = 24/598 (4%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
            LA+RVF  MP  + V++N L++G+A+   G+  + +F  M+         ++S++L   
Sbjct: 195 RLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLSPDCVTISSLLAAC 254

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           A+ G ++ G  +H+   + G + D  +  SL+D+Y KCG  + AL +F      +VV W 
Sbjct: 255 ASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIFNLGNRTNVVLWN 314

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            I+    Q     ++ ++F  M+ + ++PNQF    ++R  T TG+   GE IH++  K 
Sbjct: 315 LILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLGEQIHSLSVKT 374

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           GFESD  V   L+ MY + G +    RV E +  +D VSW ++ + +  +E     L  F
Sbjct: 375 GFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHEYCKDALAAF 434

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M   G  P+       +  C+ +  +  G Q+HA        G+  +  +LV++Y + 
Sbjct: 435 KEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIHARVYVSGYSGDVSIWNALVNLYARC 494

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G + +A  +F+ + +KD   +  +++ +AQ+G  E ALK F +M   G+K N FT  S L
Sbjct: 495 GRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSAL 554

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           +  + +A +  G+ +H+  +KTGH  +  V  AL+++Y KCGS +DA+  F   + R+  
Sbjct: 555 SASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEV 614

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SWN +I    +HG G +AL+ F  M  EG                          +F S+
Sbjct: 615 SWNTIITSCSQHGRGLEALDFFDQMKKEGL------------------------SYFKSM 650

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
              YGI P   H+AC+IDI GRAG+    + F+ E  +  +A+VW  LL AC  H NIE+
Sbjct: 651 SDKYGIRPRPDHYACVIDIFGRAGQLDRAKKFVEEMPIAADAMVWRTLLSACKVHKNIEV 710

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            E  A+ LLELEP   ++YV  S+  A  G+W +   VR ++  +G++KEP  SWIEV
Sbjct: 711 GELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMRDRGVRKEPGRSWIEV 768



 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 155/536 (28%), Positives = 277/536 (51%), Gaps = 4/536 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+RVF+ +   + VSW A+L+GYA++G G++ + L+  M       + + LS+VL     
Sbjct: 96  ARRVFEELSARDNVSWVAMLSGYAQNGLGEEALWLYRQMHRAGVVPTPYVLSSVLSSCTK 155

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +     G+ VHA   + G   + F+  +L+ +Y +CG    A +VFY +   D V +  +
Sbjct: 156 AELFAQGRSVHAQGYKQGFCSETFVGNALITLYLRCGSFRLAERVFYDMPHRDTVTFNTL 215

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   Q    + A +IF  M+ S + P+   ++SL+ A    GD + G  +H+ + K G 
Sbjct: 216 ISGHAQCAHGEHALEIFEEMQSSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGM 275

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            SD ++  +L+ +Y++ G V     +F      + V WN +   F       +   +F Q
Sbjct: 276 SSDYIMEGSLLDLYVKCGDVETALVIFNLGNRTNVVLWNLILVAFGQINDLAKSFELFCQ 335

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G +PN  T+  IL+ C+   ++  G+Q+H+ ++K   + +  V   L+DMY K G 
Sbjct: 336 MQTAGIRPNQFTYPCILRTCTCTGEIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGW 395

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           LE A    + L  KD+ ++T++I  Y Q    + AL  F++M+  GI  +   LAS ++G
Sbjct: 396 LEKARRVLEMLKEKDVVSWTSMIAGYVQHEYCKDALAAFKEMQKCGIWPDNIGLASAISG 455

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +  +  G  +H+    +G+  D+ +  ALV +YA+CG I +A + F+    +D  +W
Sbjct: 456 CAGIKAMRQGLQIHARVYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITW 515

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK 482
           N ++ G+ + GL E+AL+ F  M   G   +  TFV  LSA +++  I++GK+ H   IK
Sbjct: 516 NGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIK 575

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
             +     + +   +I + G+ G F + +   +E     N + W  ++ +CS HG 
Sbjct: 576 TGHSFETEVGN--ALISLYGKCGSFEDAKMEFSEMS-ERNEVSWNTIITSCSQHGR 628



 Score =  251 bits (640), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 155/510 (30%), Positives = 258/510 (50%), Gaps = 10/510 (1%)

Query: 23  LNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVV---HAMAIR 79
           L G+    D  KV+ LF               +  L+    +G  +  QVV   HA AI 
Sbjct: 13  LAGFLAQEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNG--RRWQVVPEIHAKAIT 70

Query: 80  LGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKI 139
            G   D+ +   L+D+YSK GL   A +VF  +   D V+W A+++   Q G  +EA  +
Sbjct: 71  RGLGKDRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALWL 130

Query: 140 FNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYME 199
           +  M  + V P  +VL+S++ + T+      G S+HA   K GF S+T VGNAL+++Y+ 
Sbjct: 131 YRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSETFVGNALITLYLR 190

Query: 200 NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVI 259
            G      RVF  + H+D+V++N L S        +  L IF +M   G  P+  T   +
Sbjct: 191 CGSFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLSPDCVTISSL 250

Query: 260 LKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL 319
           L AC+SL D+  G QLH++  K  +  ++++  SL+D+Y K G +E A V F+     ++
Sbjct: 251 LAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIFNLGNRTNV 310

Query: 320 FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSI 379
             +  I+ ++ Q  +   + + F +M+  GI+ N+FT    L  C+    +  G  +HS+
Sbjct: 311 VLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLGEQIHSL 370

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
           +VKTG   DM+VS  L+ MY+K G ++ A  V +    +D  SW  MI GYV+H   + A
Sbjct: 371 SVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHEYCKDA 430

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMID 499
           L AF+ M   G  PD I     +S C+ +  + +G +  + +  + G +  +  +  +++
Sbjct: 431 LAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIHARV-YVSGYSGDVSIWNALVN 489

Query: 500 ILGRAGK----FTEIENFITETKLTPNALV 525
           +  R G+    F+  E    + ++T N LV
Sbjct: 490 LYARCGRIREAFSSFEEIEHKDEITWNGLV 519



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 113/352 (32%), Positives = 187/352 (53%), Gaps = 4/352 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  +F      NVV WN +L  + +  D  K   LFC M+    + ++F+   +L+ 
Sbjct: 295 VETALVIFNLGNRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRT 354

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              +G I  G+ +H+++++ G   D ++S  L+DMYSK G  + A +V   +K+ DVV+W
Sbjct: 355 CTCTGEIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSW 414

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I    Q   C++A   F  M++  + P+   L S +         R G  IHA +  
Sbjct: 415 TSMIAGYVQHEYCKDALAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIHARVYV 474

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G+  D  + NALV++Y   GR+      FE I H+D ++WN L S F      ++ L++
Sbjct: 475 SGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKV 534

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK--HSLDGNHVVGTSLVDMY 298
           F +M   G K N+ TF+  L A ++L+++  GKQ+HA  IK  HS +    VG +L+ +Y
Sbjct: 535 FMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETE--VGNALISLY 592

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
            K G  EDA + F  ++ ++  ++  IITS +Q G    AL  F +M+ EG+
Sbjct: 593 GKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDFFDQMKKEGL 644


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 209/605 (34%), Positives = 342/605 (56%), Gaps = 19/605 (3%)

Query: 4   AKRVFKSMPEL-NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG-F 61
           A+ VF  M  L ++VSW A+ +  A +G  +  + L   M +     + ++L       F
Sbjct: 103 ARNVFDGMRGLRDIVSWTAMASCLARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHACF 162

Query: 62  ANSGYIKAGQVVHAMAIRLGC-ALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +  Y   G VV  +  ++G    D  +  +L+DM ++ G   +A KVF  + +  VV W
Sbjct: 163 PHELYCLVGGVVLGLVHKMGLWGTDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVW 222

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+   Q  C +EA ++F    E   +P+++ ++S++ A TE G  R G  +H++  +
Sbjct: 223 TLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALR 282

Query: 181 YGFESDTLVGNALVSMYMENG---RVSYGSRVFEAIAHQDSVSWNALFSRF-QDYESPDQ 236
            G  SD  V   LV MY ++     + Y ++VFE +   D +SW AL S + Q     ++
Sbjct: 283 MGLASDACVSCGLVDMYAKSNIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENK 342

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            + +F +ML +  KPN  T+  ILK+C+S+SD   G+Q+HAH IK +    H VG +LV 
Sbjct: 343 VMALFGEMLNESIKPNHITYSSILKSCASISDHDSGRQVHAHVIKSNQASAHTVGNALVS 402

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE-GIKSNEF 355
           MY +SGC+E+A   F+ L  +      ++I    +  +  +     R +R++ GI S+ F
Sbjct: 403 MYAESGCMEEARRVFNQLYER------SMIPCITEGRDFPLD---HRIVRMDVGISSSTF 453

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
             AS ++  + V  L  G+ LH++++K G   D FVS +LV+MY++CG ++DA   F   
Sbjct: 454 --ASLISAAASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNEL 511

Query: 416 ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
             R+  SW  MI G  KHG  E+AL  F  M+  G  P+++T++ VLSACSH+GL+ EGK
Sbjct: 512 KDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGK 571

Query: 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
           ++F S+++ +G+ P ++H+ACM+D+L R+G   E   FI E  L  +ALVW+ LLGAC  
Sbjct: 572 EYFRSMQRDHGLIPRMEHYACMVDLLARSGIVKEALEFINEMPLKADALVWKTLLGACRS 631

Query: 536 HGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCS 595
           H NIE+ E  A+ ++ELEP+  + YV  S++ A  G W++ + +R+ +    + KE   S
Sbjct: 632 HDNIEVGEITAKNVVELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLS 691

Query: 596 WIEVD 600
           W+EV+
Sbjct: 692 WMEVE 696



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 142/525 (27%), Positives = 251/525 (47%), Gaps = 55/525 (10%)

Query: 65  GYIKAGQVVHAMAIRLGCALDK--FLSCSLVDMYSKCGLADNALKVFYRIKD-PDVVAWG 121
           G ++ G+ +H   +R G  LD+   ++ SL+ +YS+CG   +A  VF  ++   D+V+W 
Sbjct: 62  GDLRLGRALHRRLLR-GDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWT 120

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC-- 179
           A+ +CL + G  + +  +   M ES + PN + L +   A             H + C  
Sbjct: 121 AMASCLARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHACFP----------HELYCLV 170

Query: 180 ---------KYG-FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
                    K G + +D  VG+AL+ M   NG ++   +VF+ +  +  V W  L SR+ 
Sbjct: 171 GGVVLGLVHKMGLWGTDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYV 230

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
             E  ++ + +F   L  GF+P+  T   ++ AC+ L  V  G QLH+  ++  L  +  
Sbjct: 231 QGECAEEAVELFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDAC 290

Query: 290 VGTSLVDMYDKSG---CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAE---MALKCFR 343
           V   LVDMY KS     ++ A   F+ +   D+ ++TA+I+ Y Q+G  E   MAL  F 
Sbjct: 291 VSCGLVDMYAKSNIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMAL--FG 348

Query: 344 KMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403
           +M  E IK N  T +S L  C+ ++   +GR +H+  +K+       V  ALV+MYA+ G
Sbjct: 349 EMLNESIKPNHITYSSILKSCASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESG 408

Query: 404 SIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
            +++A  VF  + L + +    +  G       +  L+   + +D G      TF  ++S
Sbjct: 409 CMEEARRVF--NQLYERSMIPCITEGR------DFPLDHRIVRMDVGISSS--TFASLIS 458

Query: 464 ACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPN 522
           A + +G++ +G++ H  S+K  +G    + +   ++ +  R G   +      E K   N
Sbjct: 459 AAASVGMLTKGQQLHAMSLKAGFGSDRFVSN--SLVSMYSRCGYLEDACRSFNELK-DRN 515

Query: 523 ALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            + W +++   + HG        AE+ L L   M    V P+D++
Sbjct: 516 VISWTSMISGLAKHGY-------AERALSLFHDMILTGVKPNDVT 553



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 156/309 (50%), Gaps = 12/309 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESG-DGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           M+ A +VF+ MP+ +V+SW AL++GY +SG    KVM LF  M +   K +  + S++LK
Sbjct: 308 MDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILK 367

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             A+     +G+ VHA  I+   A    +  +LV MY++ G  + A +VF ++ +     
Sbjct: 368 SCASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYER---- 423

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
             ++I C+ +        +I  +     V  +     SL+ A    G    G+ +HA+  
Sbjct: 424 --SMIPCITEGRDFPLDHRIVRM----DVGISSSTFASLISAAASVGMLTKGQQLHAMSL 477

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K GF SD  V N+LVSMY   G +    R F  +  ++ +SW ++ S    +   ++ L 
Sbjct: 478 KAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALS 537

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ-LHAHTIKHSLDGNHVVGTSLVDMY 298
           +F+ M+L G KPN  T+I +L ACS +  V  GK+   +    H L         +VD+ 
Sbjct: 538 LFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLL 597

Query: 299 DKSGCLEDA 307
            +SG +++A
Sbjct: 598 ARSGIVKEA 606



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 87/206 (42%), Gaps = 19/206 (9%)

Query: 373 GRLLHSIAVKTGHLLDM--FVSTALVAMYAKCGSIDDAEAVFKG-SALRDTASWNMMIGG 429
           GR LH   ++ G LLD    V+ +L+ +Y++CG++  A  VF G   LRD  SW  M   
Sbjct: 67  GRALHRRLLR-GDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASC 125

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITP 489
             ++G    +L     ML+ G +P+  T      AC    L          +    G+  
Sbjct: 126 LARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHKMGLWG 185

Query: 490 T-IKHFACMIDILGRAGKFTE----IENFITETKLTPNALVWENLLGACSWHGNIELDEK 544
           T +   + +ID+L R G         +  I +T +    L+   + G C+        E+
Sbjct: 186 TDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECA--------EE 237

Query: 545 DAEKLLE-LEPKMESN-YVFPSDISA 568
             E  L+ LE   E + Y   S ISA
Sbjct: 238 AVELFLDFLEDGFEPDRYTMSSMISA 263


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 207/666 (31%), Positives = 345/666 (51%), Gaps = 69/666 (10%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGD--------------GQKVMHLF-CSMKDMEK 47
            A +VF  MP+ + VSWNA+L GYA  GD              G  V+ LF   M  M  
Sbjct: 95  FAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGT 154

Query: 48  KFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLG---------CALDKFLSC-------- 90
            F + + + VLK  ++      G  +H +A+++G           LD +  C        
Sbjct: 155 VFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLR 214

Query: 91  ------------------------------------SLVDMYSKCG-LADNALKVFYRIK 113
                                               + +DMY KC  L+D + ++F  + 
Sbjct: 215 GGLELFKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLP 274

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES 173
           + ++ ++ AII    +     EA  +F L+++S +  ++  L+   RA         G  
Sbjct: 275 NHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQ 334

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           +H +  K   +S+  V NA++ MY + G +     VFE +  +D+VSWNA+ +  +   +
Sbjct: 335 VHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGN 394

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
            ++ L +F  ML  G +P+  T+  +LKAC+    +  G ++H   IK  +  +  VG +
Sbjct: 395 EEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIA 454

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           L+DMY K G +E A    D LA + + ++ AII+ ++   ++E A K F KM   G+  +
Sbjct: 455 LIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPD 514

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
            FT A+ L+ C+ + T+  G+ +H+  +K     D ++S+ LV MY+KCG++ D + +F+
Sbjct: 515 NFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFE 574

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
            +  RD  +WN M+ GY +HGLGE+AL+ F  M  E   P+  TF+ VL AC HMGL+E+
Sbjct: 575 KAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEK 634

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           G  +F S+   YG+ P ++H++C++DI+GR+G+ ++    I       +A++W  LL  C
Sbjct: 635 GLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSXC 694

Query: 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPS 593
             HGN+E+ EK A  +L+LEP+  + YV  S+I A  G WN+ + +R ++   G+KKEP 
Sbjct: 695 KIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPG 754

Query: 594 CSWIEV 599
           CSWIE+
Sbjct: 755 CSWIEI 760



 Score =  214 bits (546), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 149/533 (27%), Positives = 255/533 (47%), Gaps = 21/533 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           + ++F S+P  N+ S+NA++ GYA S  G + + +F  ++       + SLS   +  A 
Sbjct: 266 SNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAV 325

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G  VH ++++  C  +  ++ +++DMY KCG    A  VF  +   D V+W AI
Sbjct: 326 IKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAI 385

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I   +Q G  ++   +F  M +S ++P++F   S+++A        CG  IH  I K   
Sbjct: 386 IAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRM 445

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D+ VG AL+ MY + G +    ++ + +A Q  VSWNA+ S F   +  ++  + F +
Sbjct: 446 GLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSK 505

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           ML  G  P+  T+  IL  C++L  V  GKQ+HA  IK  L  +  + ++LVDMY K G 
Sbjct: 506 MLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGN 565

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++D  + F+   N+D   + A++  YAQ G  E ALK F  M+LE +K N  T  + L  
Sbjct: 566 MQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRA 625

Query: 364 CSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DTA 421
           C  +  +  G    HS+    G    +   + +V +  + G +  A  + +G     D  
Sbjct: 626 CGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAV 685

Query: 422 SWNMMIGGYVKHG---LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
            W  ++     HG   + EKA  +   +  E    D   +V++ +  ++ G+  E  K  
Sbjct: 686 IWRTLLSXCKIHGNVEVAEKAAYSILQLEPE----DSAAYVLLSNIYANAGMWNEVTK-- 739

Query: 479 SSIKKIYGITPTIKHFAC-MIDILGRAGKFTEIENFITETKLTPNAL-VWENL 529
             ++K+       K   C  I+I       +E+  F+   K  P +  ++ENL
Sbjct: 740 --LRKMMRFNGLKKEPGCSWIEIK------SEVHAFLVGDKAHPRSKEIYENL 784



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 132/558 (23%), Positives = 237/558 (42%), Gaps = 75/558 (13%)

Query: 51  KFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFY 110
           K + S + +  ++   +  G+  HA  I        F++  L+ MY KC     A KVF 
Sbjct: 42  KKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFD 101

Query: 111 RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLM----------------RESSVKPNQFV 154
            +   D V+W A++     +G    A K+F+ M                R  +V  ++  
Sbjct: 102 GMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVF-DRTT 160

Query: 155 LTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMY----MENG--------- 201
              ++++ +   D   G  IH +  K GF+ D + G+AL+ MY    ++N          
Sbjct: 161 FAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELF 220

Query: 202 ------------------RVSYGSRV-----------------------FEAIAHQDSVS 220
                             +  +G+ V                       F ++ + +  S
Sbjct: 221 KEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQS 280

Query: 221 WNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTI 280
           +NA+   +   +   + L +F  +   G   +  +     +AC+ +     G Q+H  ++
Sbjct: 281 YNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSM 340

Query: 281 KHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALK 340
           K     N  V  +++DMY K G L +A + F+ + ++D  ++ AII ++ Q G  E  L 
Sbjct: 341 KSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLS 400

Query: 341 CFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYA 400
            F  M   G++ +EFT  S L  C+    L  G  +H+  +K+   LD FV  AL+ MY+
Sbjct: 401 LFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYS 460

Query: 401 KCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVV 460
           KCG ++ AE +    A +   SWN +I G+      E+A + F  ML+ G  PD  T+  
Sbjct: 461 KCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYAT 520

Query: 461 VLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKL 519
           +L  C+++  +E GK+ H   IKK       I   + ++D+  + G   + +  I E   
Sbjct: 521 ILDTCANLVTVELGKQIHAQIIKKELQSDAYIS--STLVDMYSKCGNMQDFQ-LIFEKAP 577

Query: 520 TPNALVWENLLGACSWHG 537
             + + W  ++   + HG
Sbjct: 578 NRDFVTWNAMVCGYAQHG 595



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 121/453 (26%), Positives = 198/453 (43%), Gaps = 75/453 (16%)

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
           G+  HA +    F+    V N L+ MY++   + +  +VF+ +  +D+VSWNA+   +  
Sbjct: 61  GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGMPQRDTVSWNAMLFGYAG 120

Query: 231 YESPDQGLRIF---------------YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL 275
                   ++F               ++M   G   +  TF V+LK+CSSL D G G Q+
Sbjct: 121 RGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQI 180

Query: 276 HAHTIKHSLDGNHVVGTSLVDMY--------DKSGCLE------DAGVA----------- 310
           H   +K   D + V G++L+DMY        D  G LE       AGV            
Sbjct: 181 HGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELFKEMQKAGVGALQLHGHALKT 240

Query: 311 -----------------------------FDSLANKDLFAYTAIITSYAQAGEAEMALKC 341
                                        F+SL N +L +Y AII  YA++ +   AL  
Sbjct: 241 DFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGM 300

Query: 342 FRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAK 401
           FR ++  G+  +E +L+     C+ +     G  +H +++K+    ++ V+ A++ MY K
Sbjct: 301 FRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGK 360

Query: 402 CGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVV 461
           CG++ +A  VF+    RD  SWN +I  + ++G  EK L  F  ML  G  PDE T+  V
Sbjct: 361 CGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSV 420

Query: 462 LSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLT 520
           L AC+    +  G + H   IK   G+   +     +ID+  + G   + E      +L 
Sbjct: 421 LKACAGWQALNCGMEIHNRIIKSRMGLDSFVG--IALIDMYSKCGMMEKAEKL--HDRLA 476

Query: 521 PNALV-WENLLGACSWHGNIELDEKDAEKLLEL 552
              +V W  ++   S     E  +K   K+LE+
Sbjct: 477 EQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEM 509



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 116/228 (50%), Gaps = 2/228 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A+++   + E  VVSWNA+++G++     ++    F  M +M      F+ +T+L  
Sbjct: 465 MEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDT 524

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            AN   ++ G+ +HA  I+     D ++S +LVDMYSKCG   +   +F +  + D V W
Sbjct: 525 CANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTW 584

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG-ESIHAVIC 179
            A++    Q G  +EA KIF  M+  +VKPN     +++RA    G    G    H+++ 
Sbjct: 585 NAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLS 644

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-DSVSWNALFS 226
            YG +      + +V +   +G+VS    + E +  + D+V W  L S
Sbjct: 645 NYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLS 692



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/356 (23%), Positives = 135/356 (37%), Gaps = 73/356 (20%)

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
           TF  I + CS    +  GKQ HA  I         V   L+ MY K   L  A   FD +
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGM 103

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF---------------TLAS 359
             +D  ++ A++  YA  G+  +A K F  M   G    E                T A 
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFAV 163

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGH---------LLDMF-------------------- 390
            L  CS +     G  +H +AVK G          LLDM+                    
Sbjct: 164 VLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELFKEM 223

Query: 391 ------------------------VSTALVAMYAKCGSIDD-AEAVFKGSALRDTASWNM 425
                                   + TA + MY KC ++ D +  +F      +  S+N 
Sbjct: 224 QKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNA 283

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM-GLIEEGKKHFSSIKKI 484
           +I GY +   G +AL  FR++   G   DE++      AC+ + G +E  + H  S+K +
Sbjct: 284 IIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMKSL 343

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
                 + +   ++D+ G+ G   E    + E  ++ +A+ W  ++ A   +GN E
Sbjct: 344 CQSNICVAN--AILDMYGKCGALVE-ACLVFEEMVSRDAVSWNAIIAAHEQNGNEE 396


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  358 bits (918), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 195/599 (32%), Positives = 322/599 (53%), Gaps = 5/599 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A ++F    + +V  WN  L+ Y ++G+G + +  F  M          +   +L   A+
Sbjct: 250 ATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVAS 309

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSC--SLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
             +++ G+ +H   +R G   D+F+S   S ++MY K G  + A ++F ++K+ D+++W 
Sbjct: 310 LNHLELGKQIHGAVVRFG--WDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWN 367

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC-GESIHAVICK 180
            +I+   + G  + + ++F  +  S + P+QF +TS++RA +   +  C G  +H    K
Sbjct: 368 TVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALK 427

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G   D+ V  AL+ +Y + G++     +F      D  SWNA+   F   ++  + LR+
Sbjct: 428 AGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRL 487

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  M  +G K +  TF    KA   L  +  GKQ+HA  IK     +  V + ++DMY K
Sbjct: 488 FSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLK 547

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G ++ A   F+ + + D  A+T +I+   + GE E AL  + +MRL G++ +E+T A+ 
Sbjct: 548 CGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATL 607

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           +  CS +  L  G+ +H+  +K     D FV T+LV MYAKCG+I+DA  +F+    R  
Sbjct: 608 VKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSV 667

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
           A WN MI G  +HG  E+AL  F  M   G  PD +TF+ VLSACSH GL  +  K+F S
Sbjct: 668 ALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDS 727

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           ++K YG+ P I+H++C++D L RAG   E E  ++      +A ++  LL AC   G+ E
Sbjct: 728 MQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNACRVQGDKE 787

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
             E+ AEKL  ++P   + YV  S+I A   +W +    R ++    +KKEP  SWI++
Sbjct: 788 TGERVAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEPGFSWIDM 846



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 137/548 (25%), Positives = 252/548 (45%), Gaps = 42/548 (7%)

Query: 4   AKRVFKSMPE--LNVVSWNALLNGYAESGDGQKV------MHLFCSMKDMEKKFSKFSLS 55
           A+++F   P+   ++V++NA+L  YA +G+   V       H+F  ++      ++ +LS
Sbjct: 67  ARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLS 126

Query: 56  TVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP 115
            + K     G   A + +   A+++G   D F++ +LV++Y+K      A  +F R+   
Sbjct: 127 PLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVR 186

Query: 116 DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQF-VLTSLVRATTETGDQRCGESI 174
           DVV W  ++    + G   E   +F+    S ++P+   V T L+    +T  +R  E +
Sbjct: 187 DVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQV 246

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
            A                            Y +++F      D   WN   S +      
Sbjct: 247 RA----------------------------YATKLFVCDDDSDVTVWNKTLSSYLQAGEG 278

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
            + +  F  M+      +  T+IVIL   +SL+ +  GKQ+H   ++   D    V  S 
Sbjct: 279 WEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSA 338

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           ++MY K+G +  A   F  +   DL ++  +I+  A++G  E +L+ F  +   G+  ++
Sbjct: 339 INMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQ 398

Query: 355 FTLASCLNGCSPV-ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
           FT+ S L  CS +  +   GR +H+ A+K G +LD FVSTAL+ +Y+K G +++AE +F 
Sbjct: 399 FTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFH 458

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
                D ASWN M+ G+       +AL  F +M + G   D+ITF     A   +  +++
Sbjct: 459 NQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQ 518

Query: 474 GKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
           GK+ H   IK  +     +   + ++D+  + G+         +   +P+ + W  ++  
Sbjct: 519 GKQIHAVVIKMRFHYDLFV--ISGILDMYLKCGEMKSARKVFNQIP-SPDDVAWTTVISG 575

Query: 533 CSWHGNIE 540
           C  +G  E
Sbjct: 576 CVENGEEE 583



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 129/473 (27%), Positives = 207/473 (43%), Gaps = 50/473 (10%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF--YR 111
            S +    A+S  I  G+  HA+ +  G   D++++ +L+ MY+KCG   +A K+F    
Sbjct: 17  FSILRHAIADSDLI-LGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITP 75

Query: 112 IKDPDVVAWGAIITCLDQQG------CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTET 165
             D D+V + AI+      G         EA  IF L+R+S +   +  L+ L +     
Sbjct: 76  QSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLY 135

Query: 166 GDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALF 225
           G     E++     K G + D  V  ALV++Y +  R+     +F+ +  +D V WN + 
Sbjct: 136 GSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMM 195

Query: 226 SRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLD 285
             + +  + D+ L +F      G +P+  +   IL        +G GK+      +  L+
Sbjct: 196 KAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTIL--------MGVGKKT---VFERELE 244

Query: 286 GNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM 345
                 T L    D S                D+  +   ++SY QAGE   A+ CFR M
Sbjct: 245 QVRAYATKLFVCDDDS----------------DVTVWNKTLSSYLQAGEGWEAVDCFRDM 288

Query: 346 RLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA--LVAMYAKCG 403
               +  +  T    L+  + +  L  G+ +H   V+ G   D FVS A   + MY K G
Sbjct: 289 IKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFG--WDQFVSVANSAINMYVKAG 346

Query: 404 SIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           S++ A  +F      D  SWN +I G  + GL E +L  F  +L  G +PD+ T   VL 
Sbjct: 347 SVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLR 406

Query: 464 ACSHMGLIEE----GKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIE 511
           ACS +   EE    G++ H  ++K   GI         +ID+  + GK  E E
Sbjct: 407 ACSSL---EESYCVGRQVHTCALKA--GIVLDSFVSTALIDVYSKGGKMEEAE 454



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 167/369 (45%), Gaps = 43/369 (11%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A+ +F +    ++ SWNA+++G+  S + ++ + LF  M +  +K  + + +   K 
Sbjct: 450 MEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKA 509

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 ++ G+ +HA+ I++    D F+   ++DMY KCG   +A KVF +I  PD VAW
Sbjct: 510 AGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAW 569

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+   + G  ++A   ++ MR + V+P+++   +LV+A +       G+ IHA I K
Sbjct: 570 TTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMK 629

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
                D  V  +LV MY + G +     +F  +  +    WNA+      + + ++ L  
Sbjct: 630 LNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNF 689

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M  +G  P+  TFI +L ACS                                    
Sbjct: 690 FNEMKSRGVTPDRVTFIGVLSACS-----------------------------------H 714

Query: 301 SGCLEDAGVAFDSL-----ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
           SG   DA   FDS+        ++  Y+ ++ + ++AG  + A K    M  E   +   
Sbjct: 715 SGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYR 774

Query: 356 TLASCLNGC 364
           TL   LN C
Sbjct: 775 TL---LNAC 780



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 86/406 (21%), Positives = 163/406 (40%), Gaps = 39/406 (9%)

Query: 142 LMRESSVKPNQFVLT--SLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYME 199
           + R+ SV P+  +    S++R      D   G+  HAVI   G   D  V N L++MY +
Sbjct: 1   MSRKCSVSPSSLLPQWFSILRHAIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAK 60

Query: 200 NGRVSYGSRVFEAIAHQDS--VSWNALFSRF------QDYESPDQGLRIFYQMLLKGFKP 251
            G +    ++F+     D   V++NA+ + +       D E   +   IF  +       
Sbjct: 61  CGSLFSARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLT 120

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF 311
              T   + K C         + L  + +K  L  +  V  +LV++Y K   + +A V F
Sbjct: 121 TRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLF 180

Query: 312 DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLA 371
           D +  +D+  +  ++ +Y + G  +  L  F      G++ +          C  V T+ 
Sbjct: 181 DRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPD----------CVSVRTIL 230

Query: 372 NGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV 431
            G     +  KT    ++    A       C   DD+          D   WN  +  Y+
Sbjct: 231 MG-----VGKKTVFERELEQVRAYATKLFVCD--DDS----------DVTVWNKTLSSYL 273

Query: 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI 491
           + G G +A++ FR M+      D +T++V+LS  + +  +E GK+   ++ + +G    +
Sbjct: 274 QAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVR-FGWDQFV 332

Query: 492 KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
                 I++  +AG          + K   + + W  ++  C+  G
Sbjct: 333 SVANSAINMYVKAGSVNYARRMFGQMK-EVDLISWNTVISGCARSG 377


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  358 bits (918), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 219/651 (33%), Positives = 332/651 (50%), Gaps = 55/651 (8%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + L +R+  S     V  WNAL+    + G     +  +C M+ +      ++   VLK 
Sbjct: 79  VSLLQRLIPSHS--TVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKA 136

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI---KDPDV 117
                 ++ G  VHA+    G   + F+  S+V MY +CG  D+A ++F  +   K  D+
Sbjct: 137 CGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDI 196

Query: 118 VAWGAIITCLDQQGCCQEAAKI-FNLMRESSVK--PNQFVLTSLVRATTETGDQRCGESI 174
           V+W +I+    Q G  + A +I F +    S+K  P+   L +++ A       + G+ +
Sbjct: 197 VSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQV 256

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H    + G   D  VGNALVSMY +  +++  ++VFE I  +D VSWNA+ + +    S 
Sbjct: 257 HGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSF 316

Query: 235 D-----------------------------------QGLRIFYQMLLKGFKPNMCTFIVI 259
           D                                   + L +F QM L G +PN+ T   +
Sbjct: 317 DSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASL 376

Query: 260 LKACSSLSDVGFGKQLHAHTIKHSLDGNH-------VVGTSLVDMYDKSGCLEDAGVAFD 312
           L  C+S+  + +GKQ HA+ IK+ L+ N        +V   L+DMY K      A   FD
Sbjct: 377 LSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFD 436

Query: 313 SLANKD--LFAYTAIITSYAQAGEAEMALKCFRKM--RLEGIKSNEFTLASCLNGCSPVA 368
           S+  KD  +  +T +I  YAQ GEA  ALK F ++  +   +K N FTL+  L  C+ + 
Sbjct: 437 SIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLG 496

Query: 369 TLANGRLLHSIAVKTGHLLD-MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
            L  GR LH+ A++  +  + ++V   L+ MY+K G ID A AVF    LR+  SW  ++
Sbjct: 497 ELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLM 556

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGI 487
            GY  HG GE+AL  F  M   G+  D ITF+VVL ACSH G++++G  +F  + K +GI
Sbjct: 557 TGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGI 616

Query: 488 TPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAE 547
           TP  +H+ACM+D+LGRAG+  E    I    + P A+VW  LL A   H NIEL E  A 
Sbjct: 617 TPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAAS 676

Query: 548 KLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           KL EL  + + +Y   S++ A   RW D + +R+L+   GI+K P CSWI+
Sbjct: 677 KLTELGAENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRKRPGCSWIQ 727



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 105/360 (29%), Positives = 176/360 (48%), Gaps = 15/360 (4%)

Query: 147 SVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYG 206
           +  P    L SL+R      + +     H  I  +GF   T + +  V  Y+E G  +  
Sbjct: 25  TTSPPTIPLISLLRQCKTLINAKLA---HQQIFVHGF---TEMFSYAVGAYIECGASAEA 78

Query: 207 SRVFEAI--AHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACS 264
             + + +  +H     WNAL  R       D  L  + QM   G+ P+  TF  +LKAC 
Sbjct: 79  VSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACG 138

Query: 265 SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK---DLFA 321
            +  +  G  +HA    + L  N  +  S+V MY + G L+DA   FD +  +   D+ +
Sbjct: 139 EIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVS 198

Query: 322 YTAIITSYAQAGEAEMALKCFRKMRLE---GIKSNEFTLASCLNGCSPVATLANGRLLHS 378
           + +I+ +Y Q G++  AL+   +M       ++ +  TL + L  C+ V  L +G+ +H 
Sbjct: 199 WNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHG 258

Query: 379 IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEK 438
            +V+ G + D+FV  ALV+MYAKC  +++A  VF+G   +D  SWN M+ GY + G  + 
Sbjct: 259 FSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDS 318

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMI 498
           AL  F+MM +E    D IT+  V++  +  G   E    F  + ++YG+ P +   A ++
Sbjct: 319 ALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQM-QLYGLEPNVVTLASLL 377


>gi|255558188|ref|XP_002520121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540613|gb|EEF42176.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 589

 Score =  358 bits (918), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 194/533 (36%), Positives = 310/533 (58%), Gaps = 4/533 (0%)

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
           G  +HA A++ G   D  +S  ++++YSKCG    A ++F  + D ++V+W AII+  DQ
Sbjct: 22  GLSLHAAALKTGMLSDIIVSNHVINLYSKCGNVIFARRMFDEMSDRNLVSWSAIISGYDQ 81

Query: 130 QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
            G    A  +F+ MR   + PN++V  S++ A         G  +HA   K G  S + V
Sbjct: 82  TGQPLLALNLFSQMR---IVPNEYVFASVISACASLTALSQGLQVHAQSLKLGCVSVSFV 138

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
            NAL+SMYM+ G  +    V   ++  ++VS+NAL + F + + P++G+  F  M  KGF
Sbjct: 139 SNALISMYMKCGLCTDALLVHNVMSEPNAVSYNALIAGFVENQQPEKGIEAFKVMRQKGF 198

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
            P+  TF  +L  C+S  D   G QLH   IK +L+ +  +G  ++ MY K   +E+A  
Sbjct: 199 APDRFTFSGLLGICTSYDDFWRGMQLHCQMIKLNLEDSAFIGNVIITMYSKFNLIEEAEK 258

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFTLASCLNGCSPVA 368
            F  +  KDL ++  ++T+     + E AL+ FR M  +  +K ++FT A  L  C+ +A
Sbjct: 259 VFGLIKEKDLISWNTLVTACCFCKDHERALRVFRDMLDVCFVKPDDFTFAGVLAACAGLA 318

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
           ++ +G+ +H   ++T    D+ VS ALV MYAKCGSI ++  VF+ ++ R+  SWN +I 
Sbjct: 319 SIRHGKQIHGHLIRTRQYQDVGVSNALVNMYAKCGSIKNSYDVFRRTSDRNLVSWNTIIA 378

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGIT 488
            +  HGLG +ALE F  M   G  PD +TFV +L+AC+H GL+EEG+ +F+S+++ YGI 
Sbjct: 379 AFGNHGLGARALEHFEKMKTVGIHPDSVTFVGLLTACNHAGLVEEGQVYFNSMEEAYGIF 438

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEK 548
           P I+HF+C+ID+LGRAG+  E E ++ +     + ++  +LL AC  HG++ + E  A +
Sbjct: 439 PNIEHFSCLIDLLGRAGRLQEAEEYMEKLPFGHDPIILGSLLSACRLHGDMVIGEHLATQ 498

Query: 549 LLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           LL+L+P   S YV  S++ A+   W   +    +L   G+KKEP  S I+V G
Sbjct: 499 LLKLQPVTTSPYVLLSNLYASDEMWGGVAEAWKMLKYSGLKKEPGHSLIDVMG 551



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 113/409 (27%), Positives = 213/409 (52%), Gaps = 5/409 (1%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
            A+R+F  M + N+VSW+A+++GY ++G     ++LF  M+ +    +++  ++V+   A
Sbjct: 56  FARRMFDEMSDRNLVSWSAIISGYDQTGQPLLALNLFSQMRIVP---NEYVFASVISACA 112

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           +   +  G  VHA +++LGC    F+S +L+ MY KCGL  +AL V   + +P+ V++ A
Sbjct: 113 SLTALSQGLQVHAQSLKLGCVSVSFVSNALISMYMKCGLCTDALLVHNVMSEPNAVSYNA 172

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I    +    ++  + F +MR+    P++F  + L+   T   D   G  +H  + K  
Sbjct: 173 LIAGFVENQQPEKGIEAFKVMRQKGFAPDRFTFSGLLGICTSYDDFWRGMQLHCQMIKLN 232

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            E    +GN +++MY +   +    +VF  I  +D +SWN L +     +  ++ LR+F 
Sbjct: 233 LEDSAFIGNVIITMYSKFNLIEEAEKVFGLIKEKDLISWNTLVTACCFCKDHERALRVFR 292

Query: 243 QMLLKGF-KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            ML   F KP+  TF  +L AC+ L+ +  GKQ+H H I+     +  V  +LV+MY K 
Sbjct: 293 DMLDVCFVKPDDFTFAGVLAACAGLASIRHGKQIHGHLIRTRQYQDVGVSNALVNMYAKC 352

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G ++++   F   ++++L ++  II ++   G    AL+ F KM+  GI  +  T    L
Sbjct: 353 GSIKNSYDVFRRTSDRNLVSWNTIIAAFGNHGLGARALEHFEKMKTVGIHPDSVTFVGLL 412

Query: 362 NGCSPVATLANGRL-LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
             C+    +  G++  +S+    G   ++   + L+ +  + G + +AE
Sbjct: 413 TACNHAGLVEEGQVYFNSMEEAYGIFPNIEHFSCLIDLLGRAGRLQEAE 461



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 119/208 (57%), Gaps = 3/208 (1%)

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKD 318
           +L  C+ +     G  LHA  +K  +  + +V   ++++Y K G +  A   FD +++++
Sbjct: 9   LLHHCAKIKAFLHGLSLHAAALKTGMLSDIIVSNHVINLYSKCGNVIFARRMFDEMSDRN 68

Query: 319 LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHS 378
           L +++AII+ Y Q G+  +AL  F +MR   I  NE+  AS ++ C+ +  L+ G  +H+
Sbjct: 69  LVSWSAIISGYDQTGQPLLALNLFSQMR---IVPNEYVFASVISACASLTALSQGLQVHA 125

Query: 379 IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEK 438
            ++K G +   FVS AL++MY KCG   DA  V    +  +  S+N +I G+V++   EK
Sbjct: 126 QSLKLGCVSVSFVSNALISMYMKCGLCTDALLVHNVMSEPNAVSYNALIAGFVENQQPEK 185

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSACS 466
            +EAF++M  +G+ PD  TF  +L  C+
Sbjct: 186 GIEAFKVMRQKGFAPDRFTFSGLLGICT 213



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 1/167 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDM-EKKFSKFSLSTVLK 59
           +E A++VF  + E +++SWN L+       D ++ + +F  M D+   K   F+ + VL 
Sbjct: 253 IEEAEKVFGLIKEKDLISWNTLVTACCFCKDHERALRVFRDMLDVCFVKPDDFTFAGVLA 312

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             A    I+ G+ +H   IR     D  +S +LV+MY+KCG   N+  VF R  D ++V+
Sbjct: 313 ACAGLASIRHGKQIHGHLIRTRQYQDVGVSNALVNMYAKCGSIKNSYDVFRRTSDRNLVS 372

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
           W  II      G    A + F  M+   + P+      L+ A    G
Sbjct: 373 WNTIIAAFGNHGLGARALEHFEKMKTVGIHPDSVTFVGLLTACNHAG 419



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 71/127 (55%), Gaps = 4/127 (3%)

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
           + S L+ C+ +    +G  LH+ A+KTG L D+ VS  ++ +Y+KCG++  A  +F   +
Sbjct: 6   IGSLLHHCAKIKAFLHGLSLHAAALKTGMLSDIIVSNHVINLYSKCGNVIFARRMFDEMS 65

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG-K 475
            R+  SW+ +I GY + G    AL  F  M     VP+E  F  V+SAC+ +  + +G +
Sbjct: 66  DRNLVSWSAIISGYDQTGQPLLALNLFSQM---RIVPNEYVFASVISACASLTALSQGLQ 122

Query: 476 KHFSSIK 482
            H  S+K
Sbjct: 123 VHAQSLK 129


>gi|147820082|emb|CAN67135.1| hypothetical protein VITISV_005195 [Vitis vinifera]
          Length = 800

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 203/602 (33%), Positives = 324/602 (53%), Gaps = 25/602 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + +A ++F    + + VSWN ++ G    G+ +  +    SMK        +S  ++LKG
Sbjct: 50  IRIASKMFDETSQRDAVSWNTMIAGXVNFGNFETALEFLKSMKRYGFAVDGYSFGSILKG 109

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A  GY++ GQ VH+M +++G   + F   +L+DMY+KC   ++A +VF  I   + V W
Sbjct: 110 VACVGYVEVGQQVHSMIVKIGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTW 169

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I+     G    A  + + M    V+ +      L+    +    +    +HA I K
Sbjct: 170 NALISGYAHVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVK 229

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFE-AIAHQDSVSWNALFSRFQDYESPDQGLR 239
           +G  SDT V NA+++ Y E G +    RVF+ AI  +D V+WN++ + +      ++   
Sbjct: 230 HGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLVTWNSMLAAYLVNNQEEEAFE 289

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F +M + GF+P++ T+  ++ A    +  G GK LH   IK  L+    +  SL+ MY 
Sbjct: 290 LFLEMQVLGFEPDIYTYTSVISAAFEXAHQGQGKSLHGLVIKRGLEFLVPISNSLIAMYL 349

Query: 300 KS--GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           KS    +++A   F+SL NKD  ++ +I+T ++Q+G +E ALK F  MR + +  + +  
Sbjct: 350 KSHSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAF 409

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           ++ L  CS +ATL  G+ +H +                      CG I+DA   F  +  
Sbjct: 410 SAVLRSCSDLATLQLGQQVHVL----------------------CGVIEDARKSFDATPK 447

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
             + +WN +I GY +HG G+ AL+ F +M D     D ITFV VL+ACSH+GL+EEG   
Sbjct: 448 DSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSF 507

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
             S++  YGI P ++H+ACMID+LGRAG+  E +  I      P+A+VW+ LLGAC   G
Sbjct: 508 LKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCG 567

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           +IEL  + A  LLELEP+    YV  S +     RWN+ + ++ L+  +G+KK P  SWI
Sbjct: 568 DIELASQVASHLLELEPEEHCTYVLLSSMFGHLRRWNEKASIKRLMKERGVKKVPGWSWI 627

Query: 598 EV 599
           EV
Sbjct: 628 EV 629



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 135/521 (25%), Positives = 243/521 (46%), Gaps = 18/521 (3%)

Query: 72  VVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQG 131
           V H +AI+ G     + + +++  Y+KCG    A K+F      D V+W  +I      G
Sbjct: 20  VNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFDETSQRDAVSWNTMIAGXVNFG 79

Query: 132 CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGN 191
             + A +    M+      + +   S+++     G    G+ +H++I K G+E +   G+
Sbjct: 80  NFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMIVKIGYEGNVFAGS 139

Query: 192 ALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKP 251
           AL+ MY +  RV     VF++I  ++SV+WNAL S +           +   M L+G + 
Sbjct: 140 ALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAHVGDRGTAFWLLDCMELEGVEI 199

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF 311
           +  TF  +L             Q+HA  +KH L  +  V  +++  Y + G +EDA   F
Sbjct: 200 DDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVF 259

Query: 312 D-SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATL 370
           D ++  +DL  + +++ +Y    + E A + F +M++ G + + +T  S ++     A  
Sbjct: 260 DGAIETRDLVTWNSMLAAYLVNNQEEEAFELFLEMQVLGFEPDIYTYTSVISAAFEXAHQ 319

Query: 371 ANGRLLHSIAVKTGHLLDMFVSTALVAMYAK--CGSIDDAEAVFKGSALRDTASWNMMIG 428
             G+ LH + +K G    + +S +L+AMY K    S+D+A  +F+    +D  SWN ++ 
Sbjct: 320 GQGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILT 379

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-H-----FSSIK 482
           G+ + GL E AL+ F  M  +  V D   F  VL +CS +  ++ G++ H         +
Sbjct: 380 GFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLCGVIEDAR 439

Query: 483 KIYGITPTIKHFACMIDILGRA----GKFT-EIENFITETKLTPNALVWENLLGACSWHG 537
           K +  TP     A    I G A    GK   ++   + + ++  + + +  +L ACS  G
Sbjct: 440 KSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIG 499

Query: 538 NIELDE---KDAEKLLELEPKMESNYVFPSDISATQGRWND 575
            +E      K  E    + P+ME +Y    D+    GR ++
Sbjct: 500 LVEEGWSFLKSMESDYGIPPRME-HYACMIDLLGRAGRLDE 539



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 5/165 (3%)

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
           S    L    + H +A+K+G    ++ +  +++ YAKCG I  A  +F  ++ RD  SWN
Sbjct: 10  SSFTALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFDETSQRDAVSWN 69

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
            MI G V  G  E ALE  + M   G+  D  +F  +L   + +G +E G++  S I KI
Sbjct: 70  TMIAGXVNFGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMIVKI 129

Query: 485 YGITPTIKHFACMIDILGRAGK----FTEIENFITETKLTPNALV 525
            G    +   + ++D+  +  +    F   ++      +T NAL+
Sbjct: 130 -GYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALI 173


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 224/707 (31%), Positives = 324/707 (45%), Gaps = 109/707 (15%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+R+F  M E NV SW A++  Y   GD ++ + LF  M +   +   F    V K 
Sbjct: 140 VEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKA 199

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK------- 113
            +     + G+ V+   + +G   +  +  S++DM+ KCG  D A + F  I+       
Sbjct: 200 CSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMW 259

Query: 114 ----------------------------DPDVVAWGAIITCLDQQGCCQEAAK------- 138
                                        PD V W AII+   Q G  +EA+K       
Sbjct: 260 NIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGG 319

Query: 139 -----------------------------IFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
                                        +F  M    VKPN   + S V A T     R
Sbjct: 320 LKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLR 379

Query: 170 CGESIHAVICKY-GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS-- 226
            G  IH    K    +SD LVGN+LV  Y +   V    R F  I   D VSWNA+ +  
Sbjct: 380 HGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGY 439

Query: 227 ----------------RFQDYESPD------------------QGLRIFYQMLLKGFKPN 252
                           +FQ  E PD                    L  F +M   G  PN
Sbjct: 440 ALRGSHEEAIELLSEMKFQGIE-PDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPN 498

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
             T    L AC  + ++  GK++H + +++ ++ +  VG++L+ MY     LE A   F 
Sbjct: 499 TTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFS 558

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
            L+ +D+  + +II++ AQ+G +  AL   R+M L  ++ N  T+ S L  CS +A L  
Sbjct: 559 ELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQ 618

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
           G+ +H   ++ G     F+  +L+ MY +CGSI  +  +F     RD  SWN+MI  Y  
Sbjct: 619 GKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGM 678

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK 492
           HG G  A+  F+     G  P+ ITF  +LSACSH GLIEEG K+F  +K  Y + P ++
Sbjct: 679 HGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVE 738

Query: 493 HFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLEL 552
            +ACM+D+L RAG+F E   FI +    PNA VW +LLGAC  H N +L E  A  L EL
Sbjct: 739 QYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFEL 798

Query: 553 EPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           EP+   NYV  ++I +  GRW D + +R L+  +G+ K P CSWIEV
Sbjct: 799 EPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEV 845



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/432 (27%), Positives = 203/432 (46%), Gaps = 46/432 (10%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           ++ G  VHA  +  G  + +FL   L+++Y + G  ++A ++F ++ + +V +W AI+  
Sbjct: 105 LRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEM 164

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
               G  +E  K+F LM    V+P+ FV   + +A +E  + R G+ ++  +   GFE +
Sbjct: 165 YCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGN 224

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
           + V  +++ M+++ GR+    R FE I  +D   WN + S +       + L+    M L
Sbjct: 225 SCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKL 284

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
            G KP+  T+  I+                                     Y +SG  E+
Sbjct: 285 SGVKPDQVTWNAIISG-----------------------------------YAQSGQFEE 309

Query: 307 AGVAFDSLA-----NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           A   F  +        ++ ++TA+I    Q G    AL  FRKM LEG+K N  T+AS +
Sbjct: 310 ASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAV 369

Query: 362 NGCSPVATLANGRLLHSIAVKTGHL-LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           + C+ ++ L +GR +H   +K   L  D+ V  +LV  YAKC S++ A   F      D 
Sbjct: 370 SACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDL 429

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SWN M+ GY   G  E+A+E    M  +G  PD IT+  +++  +  G   +GK     
Sbjct: 430 VSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYG---DGKAALEF 486

Query: 481 IKKIY--GITPT 490
            ++++  G+ P 
Sbjct: 487 FQRMHSMGMDPN 498



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 167/353 (47%), Gaps = 40/353 (11%)

Query: 129 QQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTL 188
           + G    AA + + M  ++      +  S+++   +  + R G  +HA +   G +    
Sbjct: 66  RNGVLNNAAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEF 125

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG 248
           +G+ L+ +Y + G V    R+F+ ++ ++  SW A+   +      ++ +++FY M+ +G
Sbjct: 126 LGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEG 185

Query: 249 FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
            +P+   F  + KACS L +   GK ++ + +    +GN  V  S++DM+ K G ++ A 
Sbjct: 186 VRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIAR 245

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
             F+ +  KD+F +  +++ Y   GE + ALKC   M+L G+K ++ T            
Sbjct: 246 RFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTW----------- 294

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF-KGSALRD----TASW 423
                                    A+++ YA+ G  ++A   F +   L+D      SW
Sbjct: 295 ------------------------NAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSW 330

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
             +I G  ++G   +AL  FR M+ EG  P+ IT    +SAC+++ L+  G++
Sbjct: 331 TALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGRE 383



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 156/316 (49%), Gaps = 16/316 (5%)

Query: 251 PNMCTFIV--ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
           P+ C  I   IL+ C  L ++  G Q+HA  + + +D    +G+ L+++Y ++GC+EDA 
Sbjct: 85  PDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDAR 144

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
             FD ++ +++F++TAI+  Y   G+ E  +K F  M  EG++ + F        CS + 
Sbjct: 145 RMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELK 204

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
               G+ ++   +  G   +  V  +++ M+ KCG +D A   F+    +D   WN+M+ 
Sbjct: 205 NYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVS 264

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGIT 488
           GY   G  +KAL+    M   G  PD++T+  ++S  +  G  EE  K+F  +  +    
Sbjct: 265 GYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFK 324

Query: 489 PTIKHFACMIDILGRAG-KFTEIENF--ITETKLTPNALVWENLLGACS-----WHGN-- 538
           P +  +  +I    + G  F  +  F  +    + PN++   + + AC+      HG   
Sbjct: 325 PNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREI 384

Query: 539 ----IELDEKDAEKLL 550
               I+++E D++ L+
Sbjct: 385 HGYCIKVEELDSDLLV 400


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 224/707 (31%), Positives = 324/707 (45%), Gaps = 109/707 (15%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+R+F  M E NV SW A++  Y   GD ++ + LF  M +   +   F    V K 
Sbjct: 140 VEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKA 199

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK------- 113
            +     + G+ V+   + +G   +  +  S++DM+ KCG  D A + F  I+       
Sbjct: 200 CSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMW 259

Query: 114 ----------------------------DPDVVAWGAIITCLDQQGCCQEAAK------- 138
                                        PD V W AII+   Q G  +EA+K       
Sbjct: 260 NIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGG 319

Query: 139 -----------------------------IFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
                                        +F  M    VKPN   + S V A T     R
Sbjct: 320 LKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLR 379

Query: 170 CGESIHAVICKY-GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS-- 226
            G  IH    K    +SD LVGN+LV  Y +   V    R F  I   D VSWNA+ +  
Sbjct: 380 HGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGY 439

Query: 227 ----------------RFQDYESPD------------------QGLRIFYQMLLKGFKPN 252
                           +FQ  E PD                    L  F +M   G  PN
Sbjct: 440 ALRGSHEEAIELLSEMKFQGIE-PDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPN 498

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
             T    L AC  + ++  GK++H + +++ ++ +  VG++L+ MY     LE A   F 
Sbjct: 499 TTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFS 558

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
            L+ +D+  + +II++ AQ+G +  AL   R+M L  ++ N  T+ S L  CS +A L  
Sbjct: 559 ELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQ 618

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
           G+ +H   ++ G     F+  +L+ MY +CGSI  +  +F     RD  SWN+MI  Y  
Sbjct: 619 GKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGM 678

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK 492
           HG G  A+  F+     G  P+ ITF  +LSACSH GLIEEG K+F  +K  Y + P ++
Sbjct: 679 HGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVE 738

Query: 493 HFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLEL 552
            +ACM+D+L RAG+F E   FI +    PNA VW +LLGAC  H N +L E  A  L EL
Sbjct: 739 QYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFEL 798

Query: 553 EPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           EP+   NYV  ++I +  GRW D + +R L+  +G+ K P CSWIEV
Sbjct: 799 EPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEV 845



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/432 (27%), Positives = 203/432 (46%), Gaps = 46/432 (10%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           ++ G  VHA  +  G  + +FL   L+++Y + G  ++A ++F ++ + +V +W AI+  
Sbjct: 105 LRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEM 164

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
               G  +E  K+F LM    V+P+ FV   + +A +E  + R G+ ++  +   GFE +
Sbjct: 165 YCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGN 224

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
           + V  +++ M+++ GR+    R FE I  +D   WN + S +       + L+    M L
Sbjct: 225 SCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKL 284

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
            G KP+  T+  I+                                     Y +SG  E+
Sbjct: 285 SGVKPDQVTWNAIISG-----------------------------------YAQSGQFEE 309

Query: 307 AGVAFDSLA-----NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           A   F  +        ++ ++TA+I    Q G    AL  FRKM LEG+K N  T+AS +
Sbjct: 310 ASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAV 369

Query: 362 NGCSPVATLANGRLLHSIAVKTGHL-LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           + C+ ++ L +GR +H   +K   L  D+ V  +LV  YAKC S++ A   F      D 
Sbjct: 370 SACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDL 429

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SWN M+ GY   G  E+A+E    M  +G  PD IT+  +++  +  G   +GK     
Sbjct: 430 VSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYG---DGKAALEF 486

Query: 481 IKKIY--GITPT 490
            ++++  G+ P 
Sbjct: 487 FQRMHSMGMDPN 498



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 167/353 (47%), Gaps = 40/353 (11%)

Query: 129 QQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTL 188
           + G    AA + + M  ++      +  S+++   +  + R G  +HA +   G +    
Sbjct: 66  RNGVLNNAAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEF 125

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG 248
           +G+ L+ +Y + G V    R+F+ ++ ++  SW A+   +      ++ +++FY M+ +G
Sbjct: 126 LGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEG 185

Query: 249 FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
            +P+   F  + KACS L +   GK ++ + +    +GN  V  S++DM+ K G ++ A 
Sbjct: 186 VRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIAR 245

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
             F+ +  KD+F +  +++ Y   GE + ALKC   M+L G+K ++ T            
Sbjct: 246 RFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTW----------- 294

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF-KGSALRD----TASW 423
                                    A+++ YA+ G  ++A   F +   L+D      SW
Sbjct: 295 ------------------------NAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSW 330

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
             +I G  ++G   +AL  FR M+ EG  P+ IT    +SAC+++ L+  G++
Sbjct: 331 TALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGRE 383



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 156/316 (49%), Gaps = 16/316 (5%)

Query: 251 PNMCTFIV--ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
           P+ C  I   IL+ C  L ++  G Q+HA  + + +D    +G+ L+++Y ++GC+EDA 
Sbjct: 85  PDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDAR 144

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
             FD ++ +++F++TAI+  Y   G+ E  +K F  M  EG++ + F        CS + 
Sbjct: 145 RMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELK 204

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
               G+ ++   +  G   +  V  +++ M+ KCG +D A   F+    +D   WN+M+ 
Sbjct: 205 NYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVS 264

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGIT 488
           GY   G  +KAL+    M   G  PD++T+  ++S  +  G  EE  K+F  +  +    
Sbjct: 265 GYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFK 324

Query: 489 PTIKHFACMIDILGRAG-KFTEIENF--ITETKLTPNALVWENLLGACS-----WHGN-- 538
           P +  +  +I    + G  F  +  F  +    + PN++   + + AC+      HG   
Sbjct: 325 PNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREI 384

Query: 539 ----IELDEKDAEKLL 550
               I+++E D++ L+
Sbjct: 385 HGYCIKVEELDSDLLV 400


>gi|224095278|ref|XP_002310370.1| predicted protein [Populus trichocarpa]
 gi|222853273|gb|EEE90820.1| predicted protein [Populus trichocarpa]
          Length = 711

 Score =  358 bits (918), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 199/604 (32%), Positives = 335/604 (55%), Gaps = 7/604 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + LA ++F  MP  + V+WN ++ GY ESG+         SMK    +   ++  ++LKG
Sbjct: 52  LNLACKLFDEMPHKDTVTWNTMITGYVESGNLGAAWEFLKSMKRRGFQADGYTFGSILKG 111

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A++     GQ VH++ +++G     +   +L+DMY+KC   ++A  VF  +   + V+W
Sbjct: 112 VAHACRHDLGQQVHSLIVKIGYEQSVYAGSALLDMYAKCERVEDAYDVFQGMPVRNFVSW 171

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ--RCGESIHAVI 178
            A+I    Q G    A  + + M++  V+        L+  T   GD+  +    +H  I
Sbjct: 172 NALIDGFVQVGDRDTAFWLLDCMQKEGVRVEDGTFAPLL--TLLDGDKFYKLTMQLHCKI 229

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFE-AIAHQDSVSWNALFSRFQDYESPDQG 237
            K+G E    + NA ++ Y E G +    RVF+ A+  +D V+WN++   +  ++  +  
Sbjct: 230 IKHGLEFYNALCNATLTAYSECGLLEDAKRVFDGAVGTRDLVTWNSMLVAYLVHDKDEDA 289

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
             +F +M   GF+P++ T+  ++ AC + +   +GK  HA  IK  L+ +  +  +L+ M
Sbjct: 290 FNLFLEMQGFGFEPDIYTYTCVISACFAAAHKNYGKSFHALVIKRGLEESVTICNALITM 349

Query: 298 YDK--SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
           Y K  +  +E A   F S+ +KD  ++ +I+T ++Q G +E ALK F  MR    + +++
Sbjct: 350 YLKLNNKSMEAALNLFHSMKSKDRVSWNSILTGFSQMGFSEDALKLFGHMRSSLEEIDDY 409

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
             ++ L  CS +A L  G+ +H + VKTG   + FV+++L+ MY+KCG I+DA   F+ +
Sbjct: 410 AYSAVLRSCSDLAILQLGQQIHLLTVKTGFDSNDFVASSLIFMYSKCGIIEDAWKCFEDT 469

Query: 416 ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
               + +WN ++  Y +HG G+ AL+ F +M +     D +TFV VL+ACSH+GL+E+G+
Sbjct: 470 TKESSITWNSIMFAYAQHGQGDVALDLFSIMREREVKLDHVTFVAVLTACSHVGLVEQGR 529

Query: 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
               S++  YGI P ++H+AC +D+ GRAG   E +  I      PNA+V + LLGAC  
Sbjct: 530 CVLKSMESDYGIPPRMEHYACAVDLFGRAGYLEEAKALIDSMPFQPNAMVLKTLLGACRA 589

Query: 536 HGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCS 595
            GNIEL  + A +LLE+EP+    YV  S++     RW+D + V  L+  + +KK P  S
Sbjct: 590 CGNIELAAQVASQLLEVEPEEHCTYVILSNMYGHLKRWDDKASVTRLMRERKVKKVPGWS 649

Query: 596 WIEV 599
           WIEV
Sbjct: 650 WIEV 653



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 147/301 (48%), Gaps = 17/301 (5%)

Query: 175 HAVICKYGFESDTLVGNALVSMYME--NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
           H    K G  S   V N ++  Y +  +G ++   ++F+ + H+D+V+WN + + + +  
Sbjct: 22  HCQAFKSGIISHIYVANNILFRYSKCFSGDLNLACKLFDEMPHKDTVTWNTMITGYVESG 81

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
           +          M  +GF+ +  TF  ILK  +       G+Q+H+  +K   + +   G+
Sbjct: 82  NLGAAWEFLKSMKRRGFQADGYTFGSILKGVAHACRHDLGQQVHSLIVKIGYEQSVYAGS 141

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           +L+DMY K   +EDA   F  +  ++  ++ A+I  + Q G+ + A      M+ EG++ 
Sbjct: 142 ALLDMYAKCERVEDAYDVFQGMPVRNFVSWNALIDGFVQVGDRDTAFWLLDCMQKEGVRV 201

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVK-----TGHLLDMF--VSTALVAMYAKCGSI 405
            + T A       P+ TL +G   + + ++       H L+ +  +  A +  Y++CG +
Sbjct: 202 EDGTFA-------PLLTLLDGDKFYKLTMQLHCKIIKHGLEFYNALCNATLTAYSECGLL 254

Query: 406 DDAEAVFKGS-ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
           +DA+ VF G+   RD  +WN M+  Y+ H   E A   F  M   G+ PD  T+  V+SA
Sbjct: 255 EDAKRVFDGAVGTRDLVTWNSMLVAYLVHDKDEDAFNLFLEMQGFGFEPDIYTYTCVISA 314

Query: 465 C 465
           C
Sbjct: 315 C 315



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 3/136 (2%)

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC--GSIDDAEAVFKGSALRDTASWNMMI 427
           L N  L H  A K+G +  ++V+  ++  Y+KC  G ++ A  +F     +DT +WN MI
Sbjct: 15  LYNVFLTHCQAFKSGIISHIYVANNILFRYSKCFSGDLNLACKLFDEMPHKDTVTWNTMI 74

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGI 487
            GYV+ G    A E  + M   G+  D  TF  +L   +H    + G++  S I KI G 
Sbjct: 75  TGYVESGNLGAAWEFLKSMKRRGFQADGYTFGSILKGVAHACRHDLGQQVHSLIVKI-GY 133

Query: 488 TPTIKHFACMIDILGR 503
             ++   + ++D+  +
Sbjct: 134 EQSVYAGSALLDMYAK 149


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  357 bits (917), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 199/602 (33%), Positives = 314/602 (52%), Gaps = 70/602 (11%)

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127
           +  ++VHA  +    +++ F+   L+D+Y KC   D+A K+F R+   +   W ++I+ L
Sbjct: 32  RGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVL 91

Query: 128 DQQGCCQEAAKIFNLMRESS------------------------VKP-------NQFVLT 156
            + G   EAA++F  M E                          VK        N++   
Sbjct: 92  TKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFG 151

Query: 157 SLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ 216
           S + A     D   G  +HA++ K  + +D  +G+AL+ MY + G V+    VF  +  +
Sbjct: 152 SALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIER 211

Query: 217 DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLH 276
           + V+WN+L + ++      + L +F +M+  G +P+  T   ++ AC+SL  +  G Q+H
Sbjct: 212 NLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIH 271

Query: 277 AHTIK-HSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA-------------------- 315
           A  +K +    + V+G +LVDMY K   + +A   FD ++                    
Sbjct: 272 ARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASV 331

Query: 316 -----------NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
                       +++ ++ A+I  Y Q GE E AL+ FR ++ E I    +T  + L+ C
Sbjct: 332 KAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSAC 391

Query: 365 SPVATLANGRLLHSIAVKTGHLL------DMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           + +A L  GR  H+  +K G         D+FV  +L+ MY KCGSI+D   VF+    R
Sbjct: 392 ANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKER 451

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D  SWN +I GY ++G G +AL+ FR ML  G  PD +T + VL ACSH GL+EEG+ +F
Sbjct: 452 DCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYF 511

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            S+++ +G+ P   H+ CM+D+LGRAG   E +N I    + P+A+VW +LL AC  HGN
Sbjct: 512 FSMEE-HGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGN 570

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           IE+ +  AEKLLE++P     YV  S++ A  GRW D   VR L+  QG+ K+P CSWIE
Sbjct: 571 IEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIE 630

Query: 599 VD 600
           V+
Sbjct: 631 VE 632



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 139/487 (28%), Positives = 236/487 (48%), Gaps = 50/487 (10%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A R+F SMPE +  SWN++++G+A+    ++ +  F  M   +   +++S  + L  
Sbjct: 97  LDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSA 156

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    +  G  VHA+  +   + D ++  +L+DMYSKCG    A +VF  + + ++V W
Sbjct: 157 CAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTW 216

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++ITC +Q G   EA ++F  M +S ++P++  L S+V A       + G  IHA + K
Sbjct: 217 NSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVK 276

Query: 181 YG-FESDTLVGNALVSMYMENGRVSYGSRVFEAIA------------------------- 214
              F  D ++GNALV MY +  +V+   RVF+ ++                         
Sbjct: 277 TNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARF 336

Query: 215 ------HQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSD 268
                  ++ VSWNAL + +      ++ LR+F  +  +   P   TF  +L AC++L+D
Sbjct: 337 MFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLAD 396

Query: 269 VGFGKQLHAHTIKHSL------DGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAY 322
           +  G+Q H H +K         + +  VG SL+DMY K G +ED    F+ +  +D  ++
Sbjct: 397 LLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSW 456

Query: 323 TAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVK 382
            AII  YAQ G    AL+ FRKM + G K +  T+   L  CS    +  GR  H     
Sbjct: 457 NAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGR--HYFFSM 514

Query: 383 TGH----LLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DTASWNMMIGGYVKHG--- 434
             H    L D +  T +V +  + G +++A+ + +   +  D   W  ++     HG   
Sbjct: 515 EEHGLIPLKDHY--TCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIE 572

Query: 435 LGEKALE 441
           +G+ A E
Sbjct: 573 MGKHAAE 579



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 104/397 (26%), Positives = 175/397 (44%), Gaps = 63/397 (15%)

Query: 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRV 209
           PN      L+ +   +   R    +HA I    F  +  + N L+ +Y +   +    ++
Sbjct: 13  PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKL 72

Query: 210 FEAIAHQDSVSWNALFS-------------RFQDYESPDQ------------------GL 238
           F+ +  +++ +WN+L S              F     PDQ                   L
Sbjct: 73  FDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESL 132

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
             F +M  + F  N  +F   L AC+ L D+  G Q+HA   K     +  +G++L+DMY
Sbjct: 133 EYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMY 192

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G +  A   F  +  ++L  + ++IT Y Q G A  AL+ F +M   G++ +E TLA
Sbjct: 193 SKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLA 252

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLL-DMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           S ++ C+ +  L  G  +H+  VKT     D+ +  ALV MYAKC  +++A  VF   ++
Sbjct: 253 SVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSI 312

Query: 418 -------------------------------RDTASWNMMIGGYVKHGLGEKALEAFRMM 446
                                          R+  SWN +I GY ++G  E+AL  FR++
Sbjct: 313 RNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLL 372

Query: 447 LDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
             E   P   TF  +LSAC+++  +  G++  + + K
Sbjct: 373 KRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLK 409



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 165/381 (43%), Gaps = 62/381 (16%)

Query: 249 FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
           + PN   F  +L +C         + +HA  +         +   L+D+Y K  CL+DA 
Sbjct: 11  YLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDAR 70

Query: 309 VAFDSLANKDLFAYTAII-------------------------------TSYAQAGEAEM 337
             FD +  ++ F + ++I                               + +AQ    E 
Sbjct: 71  KLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEE 130

Query: 338 ALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVA 397
           +L+ F KM  E    NE++  S L+ C+ +  L  G  +H++  K+ +  D+++ +AL+ 
Sbjct: 131 SLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALID 190

Query: 398 MYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEIT 457
           MY+KCGS+  AE VF G   R+  +WN +I  Y ++G   +ALE F  M+D G  PDE+T
Sbjct: 191 MYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVT 250

Query: 458 FVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTE-------- 509
              V+SAC+ +  ++EG +  + + K       +     ++D+  +  K  E        
Sbjct: 251 LASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRM 310

Query: 510 -IENFITETKLTP---------------------NALVWENLLGACSWHGNIELDEKDAE 547
            I N ++ET +                       N + W  L+   + +G  E +     
Sbjct: 311 SIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENE-EALRLF 369

Query: 548 KLLELEPKMESNYVFPSDISA 568
           +LL+ E    ++Y F + +SA
Sbjct: 370 RLLKRESIWPTHYTFGNLLSA 390


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  357 bits (917), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 194/601 (32%), Positives = 330/601 (54%), Gaps = 5/601 (0%)

Query: 1   MELAKRVFKSMPE-LNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           ++ A RVF+ M +  +V SWN++++G  ++G   + + LF  M+      + ++   VL+
Sbjct: 215 LDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQ 274

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSC-SLVDMYSKCGLADNALKVFYRIKDPDVV 118
                  +  G+ +HA  ++ G  ++  + C +L+ MY+KCG  D+AL+VF  I + D +
Sbjct: 275 VCTELAQLNLGRELHAALLKSGSEVN--IQCNALLVMYTKCGRVDSALRVFREIDEKDYI 332

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +W ++++C  Q G   EA +  + M     +P+   + SL  A    G    G+ +HA  
Sbjct: 333 SWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYA 392

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K   +SDT VGN L+ MYM+   + Y + VF+ +  +D +SW  + + +       + L
Sbjct: 393 IKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEAL 452

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            IF +   +G K +      IL+ACS L  +   KQLH + I++ L  + VV   ++D+Y
Sbjct: 453 EIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLL-DLVVKNRIIDIY 511

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            + G +  +   F+++  KD+  +T++I  YA +G    AL  F +M+   ++ +   L 
Sbjct: 512 GECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALV 571

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L     +++LA G+ +H   ++    ++  + ++LV MY+ CGS+  A  VF     +
Sbjct: 572 SILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCK 631

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D   W  MI     HG G++A++ F+ ML  G  PD ++F+ +L ACSH  L+ EGK + 
Sbjct: 632 DMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYL 691

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
             +   Y + P  +H+AC++D+LGR+G+  E   FI    L P ++VW +LLGAC  H N
Sbjct: 692 DMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKN 751

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
            EL    A +LLELEP    NYV  S++ A  G+WN+   VRA +S +G++K+P+CSWIE
Sbjct: 752 HELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRKDPACSWIE 811

Query: 599 V 599
           +
Sbjct: 812 I 812



 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 162/569 (28%), Positives = 281/569 (49%), Gaps = 17/569 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKK---FSKFSLSTVLKG 60
           A+ +F  M    V SWNAL+  Y  SG   + + ++ +M+            +L++VLK 
Sbjct: 114 ARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKA 173

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD-PDVVA 119
               G  + G  VH +A++ G     F++ +L+ MY+KCG+ D+A++VF  + D  DV +
Sbjct: 174 SGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVAS 233

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W ++I+   Q G   +A  +F  M+ + +  N +    +++  TE      G  +HA + 
Sbjct: 234 WNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALL 293

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K G E + +  NAL+ MY + GRV    RVF  I  +D +SWN++ S +       + + 
Sbjct: 294 KSGSEVN-IQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIE 352

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
              +ML  GF+P+    + +  A   L  +  GK++HA+ IK  LD +  VG +L+DMY 
Sbjct: 353 FISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYM 412

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K   +E +   FD +  KD  ++T IIT YAQ+     AL+ FR+ + EGIK +   + S
Sbjct: 413 KCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGS 472

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L  CS + T+   + LH  A++ G LLD+ V   ++ +Y +CG +  +  +F+    +D
Sbjct: 473 ILEACSGLETILLAKQLHCYAIRNG-LLDLVVKNRIIDIYGECGEVYHSLKMFETVEQKD 531

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HF 478
             +W  MI  Y   GL  +AL  F  M      PD +  V +L A   +  + +GK+ H 
Sbjct: 532 IVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHG 591

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
             I++ + +   I   + ++D+    G  +         K   + ++W  ++ A   HG+
Sbjct: 592 FLIRRNFHMEEAI--VSSLVDMYSGCGSLSGALKVFNAVK-CKDMVLWTAMINATGMHGH 648

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDIS 567
                   ++ ++L  +M    V P  +S
Sbjct: 649 -------GKQAIDLFKRMLQTGVTPDHVS 670



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 145/519 (27%), Positives = 241/519 (46%), Gaps = 21/519 (4%)

Query: 57  VLKGFANSGYIKAGQVVHAMAIRLGC--ALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
           VL   A    +  G  VHA A+  G     D FL+  L+ MY KCG   +A  +F  +  
Sbjct: 64  VLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSS 123

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMR---ESSVKPNQFVLTSLVRATTETGDQRCG 171
             V +W A+I      G   EA  ++  MR    S V P+   L S+++A+   GD RCG
Sbjct: 124 RTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCG 183

Query: 172 ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH-QDSVSWNALFSRFQD 230
             +H +  K+G +  T V NAL++MY + G +    RVFE +   +D  SWN++ S    
Sbjct: 184 CEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQ 243

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
                Q L +F  M       N  T + +L+ C+ L+ +  G++LHA  +K   + N + 
Sbjct: 244 NGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVN-IQ 302

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
             +L+ MY K G ++ A   F  +  KD  ++ ++++ Y Q G    A++   +M   G 
Sbjct: 303 CNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGF 362

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
           + +   + S  +    +  L NG+ +H+ A+K     D  V   L+ MY KC  I+ +  
Sbjct: 363 QPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAH 422

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           VF    ++D  SW  +I  Y +     +ALE FR    EG   D +    +L ACS +  
Sbjct: 423 VFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLET 482

Query: 471 IEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGK-FTEIENFITETKLTPNALVWEN 528
           I   K+ H  +I+   G+   +     +IDI G  G+ +  ++ F  ET    + + W +
Sbjct: 483 ILLAKQLHCYAIRN--GLLDLVVKNR-IIDIYGECGEVYHSLKMF--ETVEQKDIVTWTS 537

Query: 529 LLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           ++   +  G +        + L L  +M+S  V P  ++
Sbjct: 538 MINCYANSGLL-------NEALVLFAEMQSTDVQPDSVA 569


>gi|125555495|gb|EAZ01101.1| hypothetical protein OsI_23130 [Oryza sativa Indica Group]
          Length = 766

 Score =  357 bits (917), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 197/601 (32%), Positives = 322/601 (53%), Gaps = 4/601 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF  MP  N VSW +++  + ++G     + LF SM        +F+L + ++    
Sbjct: 105 ARQVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTE 164

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G +  G+ VHA A++     D  +  +LV MYSK GL D+   +F RIKD D+++WG+I
Sbjct: 165 LGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSI 224

Query: 124 ITCLDQQGCCQEAAKIFN-LMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I    QQG   EA ++F  ++ E S  PN+F   S  RA    G    GE IH +  KY 
Sbjct: 225 IAGFAQQGFEMEALQVFRKMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYR 284

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            + D  VG +L  MY     +      F  I   D VSWN++ + +       + L +F 
Sbjct: 285 LDRDLYVGCSLSDMYARFKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFS 344

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M   G +P+  T   +L AC     +  G+ +H++ +K  LDG+  V  SL+ MY +  
Sbjct: 345 EMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCS 404

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            L  A   F  + ++D+  + +I+T+ AQ    E  LK F  +       +  +L + L+
Sbjct: 405 DLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLS 464

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK--GSALRDT 420
             + +      + +H+ A K G + D  +S  L+  YAKCGS+DDA  +F+  G+  RD 
Sbjct: 465 ASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNN-RDV 523

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SW+ +I GY + G  ++AL+ F  M   G  P+ +TF+ VL+ACS +G + EG  ++S 
Sbjct: 524 FSWSSLIVGYAQFGYAKEALDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSI 583

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           ++  YGI PT +H +C++D+L RAGK TE  NFI +    P+ ++W+ LL A   H ++E
Sbjct: 584 MEPEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDME 643

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           + ++ AE +L ++P   + YV   +I A  G WN+F+ ++  + + G+KK P  SW+++ 
Sbjct: 644 MGKRAAEGILNIDPSHSAAYVLLCNIYAASGNWNEFARLKKAMRTSGVKKSPGKSWVKLK 703

Query: 601 G 601
           G
Sbjct: 704 G 704



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 145/485 (29%), Positives = 237/485 (48%), Gaps = 11/485 (2%)

Query: 85  DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMR 144
           +  L   L+ MY +C   D+A +VF  +   + V+W ++I    Q G   +A  +F+ M 
Sbjct: 85  NTVLGNHLITMYGRCAAPDSARQVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSML 144

Query: 145 ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVS 204
            S    +QF L S VRA TE GD   G  +HA   K    SD +V NALV+MY +NG V 
Sbjct: 145 RSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVD 204

Query: 205 YGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG-FKPNMCTFIVILKAC 263
            G  +FE I  +D +SW ++ + F       + L++F +M+++G   PN   F    +AC
Sbjct: 205 DGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFRKMIVEGSHHPNEFHFGSAFRAC 264

Query: 264 SSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYT 323
            ++    +G+Q+H  +IK+ LD +  VG SL DMY +   L+ A VAF  +   DL ++ 
Sbjct: 265 GAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARFKNLDSARVAFYRIEAPDLVSWN 324

Query: 324 AIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKT 383
           +I+ +Y+  G    AL  F +MR  G++ +  T+   L  C     L +GRL+HS  VK 
Sbjct: 325 SIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKL 384

Query: 384 GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF 443
           G   D+ V  +L++MYA+C  +  A  VF     +D  +WN ++    +H   E+ L+ F
Sbjct: 385 GLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLF 444

Query: 444 RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILG 502
            ++       D I+   VLSA + +G  E  K+ H  + K   G+         +ID   
Sbjct: 445 SLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKA--GLVDDRMLSNTLIDTYA 502

Query: 503 RAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVF 562
           + G   +            +   W +L+   +  G        A++ L+L  +M S  + 
Sbjct: 503 KCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGY-------AKEALDLFSRMRSLGIR 555

Query: 563 PSDIS 567
           P+ ++
Sbjct: 556 PNHVT 560



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 172/347 (49%), Gaps = 11/347 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+  F  +   ++VSWN+++N Y+  G   + + LF  M+D   +    ++  +L  
Sbjct: 305 LDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCA 364

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 +  G+++H+  ++LG   D  +  SL+ MY++C    +A+ VF+ IKD DVV W
Sbjct: 365 CVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTW 424

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +I+T   Q    +E  K+F+L+ +S    ++  L +++ A+ E G     + +HA   K
Sbjct: 425 NSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFK 484

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALFSRFQDYESPDQGLR 239
            G   D ++ N L+  Y + G +    R+FE +  ++D  SW++L   +  +    + L 
Sbjct: 485 AGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEALD 544

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS-----L 294
           +F +M   G +PN  TFI +L ACS +  V  G   + ++I     G  +V T      +
Sbjct: 545 LFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEG--CYYYSIMEPEYG--IVPTREHCSCI 600

Query: 295 VDMYDKSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALK 340
           VD+  ++G L +A    D +    D+  +  ++ +     + EM  +
Sbjct: 601 VDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKR 647



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 123/236 (52%), Gaps = 9/236 (3%)

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHS-------LDGNHVVGTSLVDMYDKSGCLEDAG 308
           +  ++ ACS L  +  G+++H H +  S       L GN V+G  L+ MY +    + A 
Sbjct: 47  YAALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSAR 106

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
             FD +  ++  ++ ++I ++ Q G A  AL  F  M   G  +++F L S +  C+ + 
Sbjct: 107 QVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELG 166

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
            +  GR +H+ A+K+    D+ V  ALV MY+K G +DD   +F+    +D  SW  +I 
Sbjct: 167 DVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIA 226

Query: 429 GYVKHGLGEKALEAFRMMLDEG-YVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK 482
           G+ + G   +AL+ FR M+ EG + P+E  F     AC  +G  E G++ H  SIK
Sbjct: 227 GFAQQGFEMEALQVFRKMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIK 282


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  357 bits (916), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 214/615 (34%), Positives = 329/615 (53%), Gaps = 19/615 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKD---MEKKFSKFSLSTV 57
           ++ AK +F ++ E N V+ N L+ G  +    ++ + +F   +D   +        LS V
Sbjct: 321 LDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIFMGTRDSFVVNTDTFVVLLSAV 380

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCA-LDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD 116
            +       +  G+ VH   +R G   L   LS  LV+MY+KCG  D A +VF  +   D
Sbjct: 381 AEFSIPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARD 440

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
            V+W  II+ LDQ G C+ A   + +MR+  + P+ F   S + +         G+ +H 
Sbjct: 441 RVSWNTIISVLDQNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQVHC 500

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD- 235
              K+G + DT V NALV MY + G  S    +F ++A  D VSWN++        +P  
Sbjct: 501 DAVKWGLDLDTSVSNALVKMYGDCGARSESWEIFNSMAEHDIVSWNSIMGVMVSSHAPTA 560

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
           + + +F  M+  G  PN  TF+ +L A S LS +  GKQ+HA  +KH    ++ V  +L+
Sbjct: 561 ESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSVLELGKQVHAVVLKHGAIEDNAVDNALM 620

Query: 296 DMYDKSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
             Y KSG ++     F S++  +D  ++ ++I+ Y   G  +  + C   M    + SN+
Sbjct: 621 SCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQETMDCVWLM----MHSNQ 676

Query: 355 F----TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
                T +  LN C+ VA L  G  +H+  +++    D+ V +AL+ MY+KCG ID A  
Sbjct: 677 MLDCCTFSIVLNACASVAALERGMEMHAFGIRSQLESDVVVESALLDMYSKCGRIDYASK 736

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           VF   + ++  SWN MI GY +HGLGEKALE F  M   G  PD +TFV VLSACSH GL
Sbjct: 737 VFNSMSQKNEFSWNSMISGYARHGLGEKALEIFEEMQRNGACPDHVTFVSVLSACSHAGL 796

Query: 471 IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
           ++ G  +F  ++  +GI P I+H++C+ID+LGRAGK  +I+ +I    + PN L+W  +L
Sbjct: 797 VDRGLDYFEMMED-HGILPHIEHYSCVIDLLGRAGKLLKIQEYINRMPMKPNTLIWRTVL 855

Query: 531 GACSWHGN---IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQG 587
            AC    +   I+L ++ +  LLELEP+   NYV  S+  A  GRW D +  RA +    
Sbjct: 856 VACRQSKDGDRIDLGKEASRMLLELEPQNPVNYVLASNFYAATGRWEDTAKARAAMGGAA 915

Query: 588 IKKEPSCSWIEV-DG 601
           +KKE   SW+ + DG
Sbjct: 916 MKKEAGQSWVTLGDG 930



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 162/585 (27%), Positives = 287/585 (49%), Gaps = 40/585 (6%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM---------KDMEKKFSKFSL 54
           A++VF + P  ++++WNAL++ YA+ G       LF +M         +  E  F     
Sbjct: 218 AQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAMLHDDSAIELRPNEHTFGSLIT 277

Query: 55  STVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
           +T L    +SG +     V A  ++ G + D ++  +LV  +++ G+ D A  +F  +K+
Sbjct: 278 ATSLSS-CSSGVLDQ---VFARVLKSGSSSDLYVGSALVSAFARHGMLDEAKDIFINLKE 333

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRES-SVKPNQF-VLTSLVR--ATTETGDQRC 170
            + V    +I  L +Q C +EA  IF   R+S  V  + F VL S V   +  E G  R 
Sbjct: 334 RNAVTLNGLIVGLVKQHCSEEAVGIFMGTRDSFVVNTDTFVVLLSAVAEFSIPEDGLMR- 392

Query: 171 GESIHAVICKYGF-ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
           G  +H  I + G  +    + N LV+MY + G +   SRVF  +  +D VSWN + S   
Sbjct: 393 GREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIISVL- 451

Query: 230 DYESPDQGLRIFYQMLLKG-FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH 288
           D     +G  + Y M+ +G   P+    I  L +C+SL  +  G+Q+H   +K  LD + 
Sbjct: 452 DQNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDLDT 511

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI----ITSYAQAGEAEMALKCFRK 344
            V  +LV MY   G   ++   F+S+A  D+ ++ +I    ++S+A   E   +++ F  
Sbjct: 512 SVSNALVKMYGDCGARSESWEIFNSMAEHDIVSWNSIMGVMVSSHAPTAE---SVEVFSN 568

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404
           M   G+  N+ T  + L+  SP++ L  G+ +H++ +K G + D  V  AL++ YAK G 
Sbjct: 569 MMRSGLTPNKVTFVNLLSALSPLSVLELGKQVHAVVLKHGAIEDNAVDNALMSCYAKSGD 628

Query: 405 IDDAEAVFKG-SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           +D  E +F   S  RD  SWN MI GY+ +G  ++ ++   +M+    + D  TF +VL+
Sbjct: 629 MDSCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLN 688

Query: 464 ACSHMGLIEEG-KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPN 522
           AC+ +  +E G + H   I+        ++  + ++D+  + G+  +  + +  +    N
Sbjct: 689 ACASVAALERGMEMHAFGIRSQLESDVVVE--SALLDMYSKCGRI-DYASKVFNSMSQKN 745

Query: 523 ALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
              W +++   + HG         EK LE+  +M+ N   P  ++
Sbjct: 746 EFSWNSMISGYARHGL-------GEKALEIFEEMQRNGACPDHVT 783



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 152/555 (27%), Positives = 263/555 (47%), Gaps = 20/555 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSK---FSLSTVLKG 60
           A++VF  M E N VSW  L++GY  SG   +   +F +M     +FS+   F+  +VL+ 
Sbjct: 110 ARQVFDGMLERNAVSWTCLVSGYVLSGITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRA 169

Query: 61  FANSG--YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKC--GLADNALKVFYRIKDPD 116
             ++G   +     VH +  +   A +  +  +L+ MY  C  GL   A +VF      D
Sbjct: 170 CQDAGPDLLAFAVQVHGLVSKTIYASNTTVCNALISMYGNCSVGLPLQAQQVFDTTPVRD 229

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFNLMRES----SVKPNQFVLTSLVRATT-ETGDQRCG 171
           ++ W A+++   ++G       +F  M        ++PN+    SL+ AT+  +      
Sbjct: 230 LITWNALMSVYAKKGYVVSTFTLFMAMLHDDSAIELRPNEHTFGSLITATSLSSCSSGVL 289

Query: 172 ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY 231
           + + A + K G  SD  VG+ALVS +  +G +     +F  +  +++V+ N L       
Sbjct: 290 DQVFARVLKSGSSSDLYVGSALVSAFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQ 349

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACS--SLSDVGF--GKQLHAHTIKHSL-DG 286
              ++ + IF       F  N  TF+V+L A +  S+ + G   G+++H H ++  L D 
Sbjct: 350 HCSEEAVGIFMGT-RDSFVVNTDTFVVLLSAVAEFSIPEDGLMRGREVHGHILRTGLIDL 408

Query: 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR 346
              +   LV+MY K G ++ A   F  L  +D  ++  II+   Q G  E A+  +  MR
Sbjct: 409 KIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIISVLDQNGFCEGAMMNYCMMR 468

Query: 347 LEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSID 406
              I  + F   S L+ C+ +  L  G+ +H  AVK G  LD  VS ALV MY  CG+  
Sbjct: 469 QGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGARS 528

Query: 407 DAEAVFKGSALRDTASWNMMIGGYV-KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC 465
           ++  +F   A  D  SWN ++G  V  H    +++E F  M+  G  P+++TFV +LSA 
Sbjct: 529 ESWEIFNSMAEHDIVSWNSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSAL 588

Query: 466 SHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV 525
           S + ++E GK+  + + K   I       A M     ++G     E   +      +A+ 
Sbjct: 589 SPLSVLELGKQVHAVVLKHGAIEDNAVDNALM-SCYAKSGDMDSCEQLFSSMSGRRDAVS 647

Query: 526 WENLLGACSWHGNIE 540
           W +++    ++G+++
Sbjct: 648 WNSMISGYIYNGHLQ 662



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 148/578 (25%), Positives = 250/578 (43%), Gaps = 66/578 (11%)

Query: 69  AGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLD 128
           A + +H   ++ G   D FLS  LV++Y+K      A +VF  + + + V+W  +++   
Sbjct: 74  APERLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYV 133

Query: 129 QQGCCQEAAKIFNLMR-ESS--VKPNQFVLTSLVRATTETGDQRC--GESIHAVICKYGF 183
             G   EA ++F  M  E S   +P  F   S++RA  + G         +H ++ K  +
Sbjct: 134 LSGITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIY 193

Query: 184 ESDTLVGNALVSMYMENGRVSYG-----SRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            S+T V NAL+SMY   G  S G      +VF+    +D ++WNAL S +          
Sbjct: 194 ASNTTVCNALISMY---GNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTF 250

Query: 239 RIFYQMLLKG----FKPNMCTFIVILKACS-SLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
            +F  ML        +PN  TF  ++ A S S    G   Q+ A  +K     +  VG++
Sbjct: 251 TLFMAMLHDDSAIELRPNEHTFGSLITATSLSSCSSGVLDQVFARVLKSGSSSDLYVGSA 310

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           LV  + + G L++A   F +L  ++      +I    +   +E A+  F   R +    N
Sbjct: 311 LVSAFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIFMGTR-DSFVVN 369

Query: 354 EFTLASCLNGCS----PVATLANGRLLHSIAVKTGHL-LDMFVSTALVAMYAKCGSIDDA 408
             T    L+  +    P   L  GR +H   ++TG + L + +S  LV MYAKCG+ID A
Sbjct: 370 TDTFVVLLSAVAEFSIPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKA 429

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
             VF+    RD  SWN +I    ++G  E A+  + MM      P     +  LS+C+ +
Sbjct: 430 SRVFRLLCARDRVSWNTIISVLDQNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASL 489

Query: 469 GLIEEGKK-HFSSIK--------------KIYG-----------ITPTIKH--------F 494
            L+  G++ H  ++K              K+YG                +H         
Sbjct: 490 RLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESWEIFNSMAEHDIVSWNSIM 549

Query: 495 ACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE--- 551
             M+       +  E+ + +  + LTPN + + NLL A S    +EL ++    +L+   
Sbjct: 550 GVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSVLELGKQVHAVVLKHGA 609

Query: 552 -----LEPKMESNYVFPSDISATQGRWNDFSGVRALLS 584
                ++  + S Y    D+ + +  ++  SG R  +S
Sbjct: 610 IEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVS 647



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 158/322 (49%), Gaps = 15/322 (4%)

Query: 166 GDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALF 225
           G++   E +H  + K G   D  + N LV++Y +  R++   +VF+ +  +++VSW  L 
Sbjct: 70  GEEAAPERLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLV 129

Query: 226 SRFQDYESPDQGLRIFYQMLLKG---FKPNMCTFIVILKACSSLSD--VGFGKQLHAHTI 280
           S +      D+  R+F  ML +G    +P   TF  +L+AC       + F  Q+H    
Sbjct: 130 SGYVLSGITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVS 189

Query: 281 KHSLDGNHVVGTSLVDMYDKS--GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMA 338
           K     N  V  +L+ MY     G    A   FD+   +DL  + A+++ YA+ G     
Sbjct: 190 KTIYASNTTVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVST 249

Query: 339 LKCFRKMRLEG----IKSNEFTLASCLNGCSPVATLANGRLLHSIA--VKTGHLLDMFVS 392
              F  M  +     ++ NE T  S +   S +++ ++G L    A  +K+G   D++V 
Sbjct: 250 FTLFMAMLHDDSAIELRPNEHTFGSLITATS-LSSCSSGVLDQVFARVLKSGSSSDLYVG 308

Query: 393 TALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV 452
           +ALV+ +A+ G +D+A+ +F     R+  + N +I G VK    E+A+  F M   + +V
Sbjct: 309 SALVSAFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIF-MGTRDSFV 367

Query: 453 PDEITFVVVLSACSHMGLIEEG 474
            +  TFVV+LSA +   + E+G
Sbjct: 368 VNTDTFVVLLSAVAEFSIPEDG 389


>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 727

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 188/599 (31%), Positives = 327/599 (54%), Gaps = 1/599 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A   F+++P   +++WNA+L G    G   K +H + SM         ++   VLK 
Sbjct: 83  LQHAFLTFRALPHKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHGVTPDNYTYPLVLKA 142

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ++   ++ G+ VH   +      + ++ C+++DM++KCG  ++A ++F  + D D+ +W
Sbjct: 143 CSSLHALQLGRWVHE-TMHGKTKANVYVQCAVIDMFAKCGSVEDARRMFEEMPDRDLASW 201

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I      G C EA  +F  MR   + P+  ++ S++ A       + G ++     +
Sbjct: 202 TALICGTMWNGECLEALLLFRKMRSEGLMPDSVIVASILPACGRLEAVKLGMALQVCAVR 261

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GFESD  V NA++ MY + G      RVF  + + D VSW+ L + +       +  ++
Sbjct: 262 SGFESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVSWSTLIAGYSQNCLYQESYKL 321

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           +  M+  G   N      +L A   L  +  GK++H   +K  L  + VVG++L+ MY  
Sbjct: 322 YIGMINVGLATNAIVATSVLPALGKLELLKQGKEMHNFVLKEGLMSDVVVGSALIVMYAN 381

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +++A   F+  ++KD+  + ++I  Y   G+ E A   FR++     + N  T+ S 
Sbjct: 382 CGSIKEAESIFECTSDKDIMVWNSMIVGYNLVGDFESAFFTFRRIWGAEHRPNFITVVSI 441

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L  C+ +  L  G+ +H    K+G  L++ V  +L+ MY+KCG ++  E VFK   +R+ 
Sbjct: 442 LPICTQMGALRQGKEIHGYVTKSGLGLNVSVGNSLIDMYSKCGFLELGEKVFKQMMVRNV 501

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            ++N MI     HG GEK L  +  M +EG  P+++TF+ +LSACSH GL++ G   ++S
Sbjct: 502 TTYNTMISACGSHGQGEKGLAFYEQMKEEGNRPNKVTFISLLSACSHAGLLDRGWLLYNS 561

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +   YGI P ++H++CM+D++GRAG       FIT   +TP+A V+ +LLGAC  H  +E
Sbjct: 562 MINDYGIEPNMEHYSCMVDLIGRAGDLDGAYKFITRMPMTPDANVFGSLLGACRLHNKVE 621

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           L E  AE++L+L+     +YV  S++ A+  RW D S VR+++  +G++K+P  SWI+V
Sbjct: 622 LTELLAERILQLKADDSGHYVLLSNLYASGKRWEDMSKVRSMIKDKGLEKKPGSSWIQV 680



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 112/409 (27%), Positives = 199/409 (48%), Gaps = 9/409 (2%)

Query: 137 AKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTL-----VGN 191
           A +    R+    P  F +TS  R  +         ++HA++   GF   T        +
Sbjct: 13  AMLITFTRQQHSLPIHFTVTSFHRLKSPPNLHE-ARTLHALLLVLGFFQPTCPHSSSFAS 71

Query: 192 ALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKP 251
            LV++Y+  G + +    F A+ H+  ++WNA+           + +  ++ ML  G  P
Sbjct: 72  QLVNVYVNFGSLQHAFLTFRALPHKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHGVTP 131

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF 311
           +  T+ ++LKACSSL  +  G+ +H  T+      N  V  +++DM+ K G +EDA   F
Sbjct: 132 DNYTYPLVLKACSSLHALQLGRWVH-ETMHGKTKANVYVQCAVIDMFAKCGSVEDARRMF 190

Query: 312 DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLA 371
           + + ++DL ++TA+I      GE   AL  FRKMR EG+  +   +AS L  C  +  + 
Sbjct: 191 EEMPDRDLASWTALICGTMWNGECLEALLLFRKMRSEGLMPDSVIVASILPACGRLEAVK 250

Query: 372 NGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV 431
            G  L   AV++G   D++VS A++ MY KCG   +A  VF      D  SW+ +I GY 
Sbjct: 251 LGMALQVCAVRSGFESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVSWSTLIAGYS 310

Query: 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI 491
           ++ L +++ + +  M++ G   + I    VL A   + L+++GK+  + + K  G+   +
Sbjct: 311 QNCLYQESYKLYIGMINVGLATNAIVATSVLPALGKLELLKQGKEMHNFVLK-EGLMSDV 369

Query: 492 KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
              + +I +    G   E E+ I E     + +VW +++   +  G+ E
Sbjct: 370 VVGSALIVMYANCGSIKEAES-IFECTSDKDIMVWNSMIVGYNLVGDFE 417



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 89/219 (40%), Gaps = 18/219 (8%)

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDM-----FVSTALVAMYAKCGSIDDA 408
            FT+ S     SP   L   R LH++ +  G            ++ LV +Y   GS+  A
Sbjct: 28  HFTVTSFHRLKSP-PNLHEARTLHALLLVLGFFQPTCPHSSSFASQLVNVYVNFGSLQHA 86

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
              F+    +   +WN ++ G V  G   KA+  +  ML  G  PD  T+ +VL ACS +
Sbjct: 87  FLTFRALPHKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHGVTPDNYTYPLVLKACSSL 146

Query: 469 GLIEEGKKHFSSIKKIYGITPTIKHFAC-MIDILGRAGKFTEIENFITETKLTPNALVWE 527
             ++ G+    +   ++G T    +  C +ID+  + G   +      E     +   W 
Sbjct: 147 HALQLGRWVHET---MHGKTKANVYVQCAVIDMFAKCGSVEDARRMFEEMP-DRDLASWT 202

Query: 528 NLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDI 566
            L+    W+G       +  + L L  KM S  + P  +
Sbjct: 203 ALICGTMWNG-------ECLEALLLFRKMRSEGLMPDSV 234


>gi|409032180|gb|AFV08644.1| EMP5 [Zea mays]
 gi|409032182|gb|AFV08645.1| EMP5 [Zea mays]
 gi|414878626|tpg|DAA55757.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 776

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 188/609 (30%), Positives = 336/609 (55%), Gaps = 13/609 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A R+   MP  N VS+N ++  Y+ +G     +  F   +   +   +F+ +  L   + 
Sbjct: 55  AARLLDEMPRRNAVSYNLVIVAYSRAGLPALSLATFARARAWARVVDRFTYAAALAACSR 114

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +  ++ G+ VHAM +  G     FLS S+  MY++CG    A +VF   ++ D V+W A+
Sbjct: 115 ALDVRTGKAVHAMVVLGGLGNGLFLSNSVASMYARCGEMGEARRVFDAAEERDDVSWNAL 174

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATT---------ETGDQRCGESI 174
           ++   + G  +E  ++F+LM    +  N F L S+++            + G  R  E++
Sbjct: 175 LSGYVRAGAREETLEVFSLMCRHGLGWNSFALGSIIKCCASSSSYAAAGDVGGGRIAEAV 234

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H  + K G ++D  + +A++ MY + G ++    +F+++   + +  NA+ + F   E+ 
Sbjct: 235 HGCVVKAGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVLNAMIAGFCREEAA 294

Query: 235 D---QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
           D   + L ++ ++  +G +P+  +F  IL+AC+   + GFGKQ+H   +KHS  G+  +G
Sbjct: 295 DVAREALGLYSELQSRGMQPSEFSFSSILRACNLAGEFGFGKQIHGQVLKHSFQGDVYIG 354

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
           ++L+D+Y  SGC+ED    F SL  +D+  +T++I+   Q    E AL+ F++    G++
Sbjct: 355 SALIDLYSGSGCMEDGYRCFRSLPKQDVVIWTSVISGCVQNELFEEALRLFQESVRCGLR 414

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            + F ++S +N C+ +A    G  +  +AVK+G      +  + + M A+ G +D A   
Sbjct: 415 PDVFAMSSVMNACASLAVARTGEQIQCLAVKSGFNRFTAMGNSFIHMCARSGDVDAATRR 474

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV-PDEITFVVVLSACSHMGL 470
           F+    RD  SW+ +I  +  HG    AL  F  MLD     P+EITF+ +L+ACSH GL
Sbjct: 475 FQEMESRDVVSWSAVISSHAHHGCARDALCVFNEMLDAKVAPPNEITFLSILTACSHGGL 534

Query: 471 IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
           ++EG +++  +   YG++PTIKH  C++D+LGRAG+  + E FI ++    +A+VW +LL
Sbjct: 535 VDEGLRYYGIMNDEYGLSPTIKHCTCVVDLLGRAGRLADAEAFIRDSAFHDDAVVWRSLL 594

Query: 531 GACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKK 590
            +C  HG++E  +  A+K+++LEP   ++YV   ++    G  +  S  R L+  +G+KK
Sbjct: 595 ASCRIHGDMERGQLVADKIMDLEPTSSASYVILYNMYLDAGELSSASKTRDLMKERGVKK 654

Query: 591 EPSCSWIEV 599
           EP  SWIE+
Sbjct: 655 EPGLSWIEL 663



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 126/263 (47%), Gaps = 5/263 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME   R F+S+P+ +VV W ++++G  ++   ++ + LF        +   F++S+V+  
Sbjct: 367 MEDGYRCFRSLPKQDVVIWTSVISGCVQNELFEEALRLFQESVRCGLRPDVFAMSSVMNA 426

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+    + G+ +  +A++ G      +  S + M ++ G  D A + F  ++  DVV+W
Sbjct: 427 CASLAVARTGEQIQCLAVKSGFNRFTAMGNSFIHMCARSGDVDAATRRFQEMESRDVVSW 486

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSV-KPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            A+I+     GC ++A  +FN M ++ V  PN+    S++ A +  G    G   + ++ 
Sbjct: 487 SAVISSHAHHGCARDALCVFNEMLDAKVAPPNEITFLSILTACSHGGLVDEGLRYYGIMN 546

Query: 180 -KYGFESDTLVGNALVSMYMENGRVSYGSR-VFEAIAHQDSVSWNALFSRFQDYESPDQG 237
            +YG          +V +    GR++     + ++  H D+V W +L +  + +   ++G
Sbjct: 547 DEYGLSPTIKHCTCVVDLLGRAGRLADAEAFIRDSAFHDDAVVWRSLLASCRIHGDMERG 606

Query: 238 LRIFYQMLLKGFKPNMCTFIVIL 260
             +  +++    +P      VIL
Sbjct: 607 QLVADKIM--DLEPTSSASYVIL 627


>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
 gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
          Length = 839

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 197/599 (32%), Positives = 326/599 (54%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A R F  M E N VSW A + G  ++    + + LF  M+ +    S+ + ++V + 
Sbjct: 187 LEDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRS 246

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    +   + +HA AI+   + D+ +  ++VD+Y+K     +A + F+ + +  V A 
Sbjct: 247 CAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQAC 306

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A++  L + G   EA ++F  M  S +  +   L+ +  A  E      G  +H +  K
Sbjct: 307 NAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIK 366

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GF+ D  V NA++ +Y +   +     VF+ +  +DSVSWNA+ +  +  E  +  +  
Sbjct: 367 SGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAY 426

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
             +ML  G +P+  T+  +LKAC+ L  + +G  +H   IK  L  +  V +++VDMY K
Sbjct: 427 LNEMLRYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCK 486

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G + +A    D +  ++L ++ +II+ ++   ++E A K F +M   G+K + FT A+ 
Sbjct: 487 CGMITEAQKLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATV 546

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L+ C+ +AT+  G+ +H   +K   L D ++S+ LV MYAKCG++ D+  +F+ +   D 
Sbjct: 547 LDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKAQKLDF 606

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SWN MI GY  HG G +ALE F  M     VP+  TFV VL ACSH+GL+++G ++F  
Sbjct: 607 VSWNAMICGYALHGQGFEALEMFERMQQANVVPNHATFVAVLRACSHVGLLDDGCRYFYL 666

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +   Y + P ++HFACM+DILGR+    E   FI    L  +A++W+ LL  C    ++E
Sbjct: 667 MTSRYKLEPQLEHFACMVDILGRSKGPQEALKFIRSMPLEADAVIWKTLLSICKIRQDVE 726

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           + E  A  +L L+P   S Y+  S++ A  G+W D S  R L+    +KKEP CSWIEV
Sbjct: 727 VAETAASNVLRLDPDDSSVYILLSNVYAESGKWVDVSRTRRLMRQGRLKKEPGCSWIEV 785



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 149/562 (26%), Positives = 265/562 (47%), Gaps = 11/562 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A  +F +MP+ +VVSWNALL+GY + G  +  + L   M        + +L+ +LK    
Sbjct: 89  AASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTLAVLLKACGG 148

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G  +HA+A++ G  +D     +LVDMY KC   ++AL+ F+ + + + V+WGA 
Sbjct: 149 LEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGERNSVSWGAA 208

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q        ++F  M+   +  +Q    S+ R+            +HA   K  F
Sbjct: 209 IAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTARQLHAHAIKNKF 268

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            +D +VG A+V +Y +   +    R F ++ +    + NA+           + L++F  
Sbjct: 269 SADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTGLGAEALQLFQF 328

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G   ++ +   +  AC+ +     G Q+H   IK   D +  V  +++D+Y K   
Sbjct: 329 MTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVCVRNAILDLYGKCKA 388

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L +A + F  +  +D  ++ AII +  Q    E  +    +M   G++ ++FT  S L  
Sbjct: 389 LVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGMEPDDFTYGSVLKA 448

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ + +L  G ++H  A+K+G  LD FVS+ +V MY KCG I +A+ +      ++  SW
Sbjct: 449 CAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQKLHDRIGGQELVSW 508

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK 482
           N +I G+  +   E+A + F  MLD G  PD  T+  VL  C+++  IE GK+ H   IK
Sbjct: 509 NSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCANLATIELGKQIHGQIIK 568

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           +       I   + ++D+  + G   +    + E     + + W  ++   + HG     
Sbjct: 569 QEMLGDEYIS--STLVDMYAKCGNMPD-SLLMFEKAQKLDFVSWNAMICGYALHGQ---- 621

Query: 543 EKDAEKLLELEPKMESNYVFPS 564
                + LE+  +M+   V P+
Sbjct: 622 ---GFEALEMFERMQQANVVPN 640



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 148/527 (28%), Positives = 250/527 (47%), Gaps = 37/527 (7%)

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF----YR------ 111
           A    +  GQ  HA  +  G     F+S  L+ MY++CG A +A  VF    +R      
Sbjct: 15  AGRSALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFDVMPHRDTVSWN 74

Query: 112 ---------------------IKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKP 150
                                + DPDVV+W A+++   Q+G  +++  +   M    V P
Sbjct: 75  TMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAP 134

Query: 151 NQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF 210
           ++  L  L++A     D   G  IHAV  K G E D   G+ALV MY +   +    R F
Sbjct: 135 DRTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFF 194

Query: 211 EAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVG 270
             +  ++SVSW A  +     E   +GL +F QM   G   +   +  + ++C++++ + 
Sbjct: 195 HGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLS 254

Query: 271 FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
             +QLHAH IK+    + VVGT++VD+Y K+  L DA  AF SL N  + A  A++    
Sbjct: 255 TARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLV 314

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
           + G    AL+ F+ M   GI  +  +L+   + C+ V     G  +H +A+K+G  +D+ 
Sbjct: 315 RTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVC 374

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
           V  A++ +Y KC ++ +A  VF+    RD+ SWN +I    ++   E  +     ML  G
Sbjct: 375 VRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYG 434

Query: 451 YVPDEITFVVVLSACSHMGLIEEGK-KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTE 509
             PD+ T+  VL AC+ +  +E G   H  +IK   G+   +   + ++D+  + G  TE
Sbjct: 435 MEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVS--STVVDMYCKCGMITE 492

Query: 510 IENFITETKLTPNALV-WENLLGACSWHGNIELDEKDAEKLLELEPK 555
            +      ++    LV W +++   S +   E  +K   ++L++  K
Sbjct: 493 AQKL--HDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVK 537



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 120/289 (41%), Gaps = 36/289 (12%)

Query: 255 TFIVILKACSSL--SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
           TF  + + C+    S +  G+  HA  +         V   L+ MY + G    A   FD
Sbjct: 4   TFSHLYQLCAGAGRSALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFD 63

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFR----------------------------- 343
            + ++D  ++  ++T+YA AG+   A   F                              
Sbjct: 64  VMPHRDTVSWNTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGL 123

Query: 344 --KMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAK 401
             +M   G+  +  TLA  L  C  +  LA G  +H++AVKTG  +D+   +ALV MY K
Sbjct: 124 SVEMARRGVAPDRTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGK 183

Query: 402 CGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVV 461
           C S++DA   F G   R++ SW   I G V++    + LE F  M   G    +  +  V
Sbjct: 184 CRSLEDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASV 243

Query: 462 LSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTE 509
             +C+ +  +   ++ H  +IK  +     +     ++D+  +A    +
Sbjct: 244 FRSCAAITCLSTARQLHAHAIKNKFSADRVVG--TAIVDVYAKADSLVD 290


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 205/590 (34%), Positives = 317/590 (53%), Gaps = 12/590 (2%)

Query: 16  VVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHA 75
           ++S N +L+GY  +G    ++  F  M + + +  + +   VL        +  GQ VH 
Sbjct: 287 IISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHC 346

Query: 76  MAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQE 135
           MA++LG  L   +S SL++MY K      A  VF  + + D+++W ++I  + Q     E
Sbjct: 347 MALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVE 406

Query: 136 AAKIFNLMRESSVKPNQFVLTSLVRATTETGD-QRCGESIHAVICKYGFESDTLVGNALV 194
           A  +F  +    +KP+ + +TS+++A +   +     + IH    K    +D+ V  AL+
Sbjct: 407 AVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALI 466

Query: 195 SMY-----MENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
             Y     M+   V +G   F      D V+WNA+ S +       + L +F  M  +G 
Sbjct: 467 DAYSRNRCMKEAEVLFGRNNF------DLVAWNAMMSGYTQSHDGHKTLELFALMHKQGE 520

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
           + +  T   +LK C  L  +  GKQ+HA+ IK   D +  V + ++DMY K G +  A  
Sbjct: 521 RSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQF 580

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369
           AFDS+   D  A+T +I+   + GE E AL  F +MRL G+  +EFT+A+     S +  
Sbjct: 581 AFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTA 640

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           L  GR +H+ A+K     D FV T+LV MYAKCGSIDDA  +FK   + +  +WN M+ G
Sbjct: 641 LEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVG 700

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITP 489
             +HG G++AL+ F+ M   G  PD++TF+ VLSACSH GL+ E  K+  S+ + YGI P
Sbjct: 701 LAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKP 760

Query: 490 TIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKL 549
            I+H++C+ D LGRAG   E EN I    +  +A ++  LL AC   G+ E  ++ A KL
Sbjct: 761 EIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTETGKRVATKL 820

Query: 550 LELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           LELEP   S YV  S++ A   +W++    R ++    +KK+P  SWIEV
Sbjct: 821 LELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEV 870



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 151/571 (26%), Positives = 267/571 (46%), Gaps = 50/571 (8%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDG-----QKVMHLFCSMKDMEKKFSKFSLSTVL 58
           A+RVF  MPE ++VSWN++L  YA+S +G     ++   LF  ++      S+ +LS +L
Sbjct: 100 ARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPML 159

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
           K   +SGY+ A +  H  A ++G   D F++ +LV++Y K G       +F  +   DVV
Sbjct: 160 KLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVV 219

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            W  ++    + G  +EA  + +    S + PN+  L  L R    +GD      + +  
Sbjct: 220 LWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITLRLLSRI---SGDDSEAGQVKS-- 274

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
                               ENG         +A A  + +S N + S +         L
Sbjct: 275 -------------------FENGN--------DASAVSEIISRNKILSGYLHAGQYSALL 307

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           + F  M+    + +  TFI++L     L  +  G+Q+H   +K  LD    V  SL++MY
Sbjct: 308 KCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMY 367

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K   +  A   F++++ +DL ++ ++I   AQ+     A+  F ++   G+K + +T+ 
Sbjct: 368 CKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMT 427

Query: 359 SCLNGCSPVAT-LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           S L   S +   L+  + +H  A+KT ++ D FVSTAL+  Y++   + +AE +F G   
Sbjct: 428 SVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLF-GRNN 486

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK- 476
            D  +WN M+ GY +   G K LE F +M  +G   D+ T   VL  C  +  I +GK+ 
Sbjct: 487 FDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQV 546

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
           H  +IK  Y +   +   + ++D+  + G  +  + F  ++   P+ + W  L+  C  +
Sbjct: 547 HAYAIKSGYDLDLWVS--SGILDMYVKCGDMSAAQ-FAFDSIPVPDDVAWTTLISGCIEN 603

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           G       + E+ L +  +M    V P + +
Sbjct: 604 G-------EEERALHVFSQMRLMGVLPDEFT 627



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 117/420 (27%), Positives = 194/420 (46%), Gaps = 39/420 (9%)

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
           G+  HA  + L    ++FL  +L+ MYSKCG    A +VF ++ + D+V+W +I+    Q
Sbjct: 65  GKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQ 124

Query: 130 --QGCCQ---EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
             +G  +   EA  +F ++R+  V  ++  L+ +++    +G     ES H   CK G +
Sbjct: 125 SSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLD 184

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
            D  V  ALV++Y++ G+V  G  +FE + ++D V WN +   + +    ++ + +    
Sbjct: 185 GDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAF 244

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
              G  PN  T    L+  S +S    G    A  +K   +GN                 
Sbjct: 245 HTSGLHPNEIT----LRLLSRIS----GDDSEAGQVKSFENGN----------------- 279

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
                  D+ A  ++ +   I++ Y  AG+    LKCF  M    ++ ++ T    L   
Sbjct: 280 -------DASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATA 332

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
             + +LA G+ +H +A+K G  L + VS +L+ MY K   I  A  VF   + RD  SWN
Sbjct: 333 VRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWN 392

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM--GLIEEGKKHFSSIK 482
            +I G  +  L  +A+  F  +L  G  PD  T   VL A S +  GL    + H  +IK
Sbjct: 393 SVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIK 452



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 107/353 (30%), Positives = 175/353 (49%), Gaps = 11/353 (3%)

Query: 14  LNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVV 73
            ++V+WNA+++GY +S DG K + LF  M    ++   F+L+TVLK       I  G+ V
Sbjct: 487 FDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQV 546

Query: 74  HAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCC 133
           HA AI+ G  LD ++S  ++DMY KCG    A   F  I  PD VAW  +I+   + G  
Sbjct: 547 HAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEE 606

Query: 134 QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNAL 193
           + A  +F+ MR   V P++F + +L +A++       G  IHA   K    SD  VG +L
Sbjct: 607 ERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVGTSL 666

Query: 194 VSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
           V MY + G +     +F+ I   +  +WNA+      +    + L++F QM   G KP+ 
Sbjct: 667 VDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDK 726

Query: 254 CTFIVILKACSSLSDVG----FGKQLHA-HTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
            TFI +L ACS    V     + + +H  + IK  ++      + L D   ++G +++A 
Sbjct: 727 VTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHY----SCLADALGRAGLVKEAE 782

Query: 309 VAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRK-MRLEGIKSNEFTLAS 359
              DS++       Y  ++ +    G+ E   +   K + LE + S+ + L S
Sbjct: 783 NLIDSMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLS 835



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 98/166 (59%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A+  F S+P  + V+W  L++G  E+G+ ++ +H+F  M+ M     +F+++T+ K 
Sbjct: 575 MSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKA 634

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    ++ G+ +HA A++L C  D F+  SLVDMY+KCG  D+A  +F RI+  ++ AW
Sbjct: 635 SSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAW 694

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
            A++  L Q G  +EA ++F  M    +KP++     ++ A + +G
Sbjct: 695 NAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSG 740


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 192/595 (32%), Positives = 322/595 (54%), Gaps = 2/595 (0%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           VF  M E ++ SWN L+ GYA++G   + ++L+  M  +  +   ++   VL+       
Sbjct: 151 VFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPD 210

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +  G+ VH   IR G   D  +  +L+ MY KCG   +A  VF R+   D ++W A+I+ 
Sbjct: 211 LARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISG 270

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             +   C E  ++F +MRE  V P+   +TS++ A    GD+R G  +H  + K GF ++
Sbjct: 271 YFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAE 330

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             V N+L+ M+   G       VF  +  +D VSW A+ S ++    P++ +  +  M  
Sbjct: 331 VSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEH 390

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           +G  P+  T   +L AC+ L  +  G  LH    +  L    +V  SL+DMY K  C++ 
Sbjct: 391 EGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDK 450

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A   F  + NK++ ++T+II        +  AL  F++M L  +K N  TL S L+ C+ 
Sbjct: 451 ALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMIL-SLKPNSVTLVSVLSACAR 509

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           +  L+ G+ +H+ A++TG   D F+  AL+ MY +CG ++ A   F  S  +D ASWN++
Sbjct: 510 IGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFN-SCEKDVASWNIL 568

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           + GY + G G  A+E F  M++    PDEITF  +L ACS  G++ +G ++F S++  + 
Sbjct: 569 LTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFH 628

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDA 546
           I P +KH+A ++D+LGRAG+  +   FI +  + P+  +W  LL AC  + N+EL E  A
Sbjct: 629 IAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAA 688

Query: 547 EKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           + + E++ K    Y+   ++ A  G+W++ + VR ++    +  +P CSW+EV G
Sbjct: 689 QHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAG 743



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 156/592 (26%), Positives = 281/592 (47%), Gaps = 39/592 (6%)

Query: 20  NALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIR 79
           N+L+      GD +K +    SM++++    + +   +L+          G  VH+   +
Sbjct: 63  NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSK 122

Query: 80  LGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKI 139
               L   L  +L+ M+ + G    A  VF ++ + D+ +W  ++    + G   EA  +
Sbjct: 123 TVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNL 182

Query: 140 FNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYME 199
           ++ M    ++P+ +    ++R      D   G  +H  + +YGFESD  V NAL++MY++
Sbjct: 183 YHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVK 242

Query: 200 NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVI 259
            G +     VF+ +  +D +SWNA+ S + + +   +GLR+F+ M      P++ T   +
Sbjct: 243 CGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSV 302

Query: 260 LKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL 319
           + AC +L D   G+++H + IK        V  SL+ M+   GC ++A + F  +  KDL
Sbjct: 303 ISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDL 362

Query: 320 FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSI 379
            ++TA+I+ Y + G  E A++ +  M  EG+  +E T+AS L+ C+ +  L  G +LH  
Sbjct: 363 VSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEF 422

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
           A +TG    + V+ +L+ MY+KC  ID A  VF     ++  SW  +I G   +    +A
Sbjct: 423 ADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEA 482

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYG------------ 486
           L  F+ M+     P+ +T V VLSAC+ +G +  GK+ H  +++   G            
Sbjct: 483 LFFFQQMI-LSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDM 541

Query: 487 ------ITPTIKHF-ACMIDIL------------GRAGKFTEIENFITETKLTPNALVWE 527
                 + P    F +C  D+             G+ G   E+ + + E+ + P+ + + 
Sbjct: 542 YVRCGRMEPAWNQFNSCEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFT 601

Query: 528 NLLGACSWHG----NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWND 575
           +LL ACS  G     +E  E   E    + P ++ +Y    D+    GR  D
Sbjct: 602 SLLCACSRSGMVTDGLEYFES-MEHKFHIAPNLK-HYASVVDLLGRAGRLED 651



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/443 (26%), Positives = 219/443 (49%), Gaps = 7/443 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF  MP  + +SWNA+++GY E+    + + LF  M++        ++++V+     
Sbjct: 249 ARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEA 308

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G  + G+ VH   I+ G   +  ++ SL+ M+S  G  D A  VF +++  D+V+W A+
Sbjct: 309 LGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAM 368

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+  ++ G  ++A + + +M    V P++  + S++ A    G    G  +H    + G 
Sbjct: 369 ISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGL 428

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            S  +V N+L+ MY +   +     VF  I +++ +SW ++    +      + L  F Q
Sbjct: 429 TSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQ 488

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M+L   KPN  T + +L AC+ +  +  GK++HAH ++  L  +  +  +L+DMY + G 
Sbjct: 489 MIL-SLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGR 547

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +E A   F+S   KD+ ++  ++T YAQ G+  +A++ F KM    +  +E T  S L  
Sbjct: 548 MEPAWNQFNS-CEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCA 606

Query: 364 CSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL-RDTA 421
           CS    + +G     S+  K     ++    ++V +  + G ++DA    K   +  D A
Sbjct: 607 CSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPA 666

Query: 422 SWNMMIGG---YVKHGLGEKALE 441
            W  ++     Y    LGE A +
Sbjct: 667 IWGALLNACRIYQNVELGELAAQ 689


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 196/598 (32%), Positives = 324/598 (54%), Gaps = 12/598 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESG---DGQKVMHLFCSMKDMEKKFSKFSLSTV 57
           + L+   FK +   N+ SWN++++ Y   G   D    +    S+  +   F  ++   V
Sbjct: 99  LSLSSTTFKHIQRKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDF--YTFPPV 156

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
           LK   +   +  G+ +H   +++G   D +++ SL+ +YS+ G  + A KVF  +   DV
Sbjct: 157 LKACLS---LADGEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDV 213

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
            +W A+I+   Q G   EA ++ + M+   VK +   ++S++    ++ D   G  +H  
Sbjct: 214 GSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLY 273

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
           + K+G ESD  V NAL++MY + GR+    RVF+ +  +D VSWN++ + ++  + P   
Sbjct: 274 VIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTA 333

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK-HSLDGNHVVGTSLVD 296
           L  F +ML  G +P++ T + +      LSD   G+ +H   ++   L+ + V+G +LV+
Sbjct: 334 LGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVN 393

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG--IKSNE 354
           MY K G ++ A   F+ L ++D+ ++  +IT YAQ G A  A+  +  M  EG  I  N+
Sbjct: 394 MYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMME-EGRTIVPNQ 452

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            T  S L   S V  L  G  +H   +K    LD+FV+T L+ MY KCG ++DA ++F  
Sbjct: 453 GTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYE 512

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
                +  WN +I     HG GEKAL+ F+ M  +G   D ITFV +LSACSH GL++E 
Sbjct: 513 IPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEA 572

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
           +  F +++K Y I P +KH+ CM+D+ GRAG   +  N ++   +  +A +W  LL AC 
Sbjct: 573 QWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACR 632

Query: 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEP 592
            HGN EL    +++LLE++ +    YV  S+I A  G+W     VR+L   +G++K P
Sbjct: 633 IHGNAELGTFASDRLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGLRKTP 690



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 83/187 (44%), Gaps = 6/187 (3%)

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
            + LH++ +  G   D+ + T LV +YA  G +  +   FK    ++  SWN M+  YV+
Sbjct: 67  AKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVR 126

Query: 433 HGLGEKALEAFRMMLD-EGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI 491
            G    +++    +L   G  PD  TF  VL AC  +    +G+K    + K+ G    +
Sbjct: 127 RGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLA---DGEKMHCWVLKM-GFEHDV 182

Query: 492 KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551
              A +I +  R G   E+ + +       +   W  ++     +GN+    +  +++  
Sbjct: 183 YVAASLIHLYSRFGA-VEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKT 241

Query: 552 LEPKMES 558
            E KM++
Sbjct: 242 EEVKMDT 248


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 192/595 (32%), Positives = 322/595 (54%), Gaps = 2/595 (0%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           VF  M E ++ SWN L+ GYA++G   + ++L+  M  +  +   ++   VL+       
Sbjct: 151 VFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPD 210

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +  G+ VH   IR G   D  +  +L+ MY KCG   +A  VF R+   D ++W A+I+ 
Sbjct: 211 LARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISG 270

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             +   C E  ++F +MRE  V P+   +TS++ A    GD+R G  +H  + K GF ++
Sbjct: 271 YFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAE 330

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             V N+L+ M+   G       VF  +  +D VSW A+ S ++    P++ +  +  M  
Sbjct: 331 VSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEH 390

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           +G  P+  T   +L AC+ L  +  G  LH    +  L    +V  SL+DMY K  C++ 
Sbjct: 391 EGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDK 450

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A   F  + NK++ ++T+II        +  AL  F++M L  +K N  TL S L+ C+ 
Sbjct: 451 ALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMIL-SLKPNSVTLVSVLSACAR 509

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           +  L+ G+ +H+ A++TG   D F+  AL+ MY +CG ++ A   F  S  +D ASWN++
Sbjct: 510 IGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFN-SCEKDVASWNIL 568

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           + GY + G G  A+E F  M++    PDEITF  +L ACS  G++ +G ++F S++  + 
Sbjct: 569 LTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFH 628

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDA 546
           I P +KH+A ++D+LGRAG+  +   FI +  + P+  +W  LL AC  + N+EL E  A
Sbjct: 629 IAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAA 688

Query: 547 EKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           + + E++ K    Y+   ++ A  G+W++ + VR ++    +  +P CSW+EV G
Sbjct: 689 QHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAG 743



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 156/592 (26%), Positives = 281/592 (47%), Gaps = 39/592 (6%)

Query: 20  NALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIR 79
           N+L+      GD +K +    SM++++    + +   +L+          G  VH+   +
Sbjct: 63  NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSK 122

Query: 80  LGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKI 139
               L   L  +L+ M+ + G    A  VF ++ + D+ +W  ++    + G   EA  +
Sbjct: 123 TVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNL 182

Query: 140 FNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYME 199
           ++ M    ++P+ +    ++R      D   G  +H  + +YGFESD  V NAL++MY++
Sbjct: 183 YHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVK 242

Query: 200 NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVI 259
            G +     VF+ +  +D +SWNA+ S + + +   +GLR+F+ M      P++ T   +
Sbjct: 243 CGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSV 302

Query: 260 LKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL 319
           + AC +L D   G+++H + IK        V  SL+ M+   GC ++A + F  +  KDL
Sbjct: 303 ISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDL 362

Query: 320 FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSI 379
            ++TA+I+ Y + G  E A++ +  M  EG+  +E T+AS L+ C+ +  L  G +LH  
Sbjct: 363 VSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEF 422

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
           A +TG    + V+ +L+ MY+KC  ID A  VF     ++  SW  +I G   +    +A
Sbjct: 423 ADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEA 482

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYG------------ 486
           L  F+ M+     P+ +T V VLSAC+ +G +  GK+ H  +++   G            
Sbjct: 483 LFFFQQMI-LSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDM 541

Query: 487 ------ITPTIKHF-ACMIDIL------------GRAGKFTEIENFITETKLTPNALVWE 527
                 + P    F +C  D+             G+ G   E+ + + E+ + P+ + + 
Sbjct: 542 YVRCGRMEPAWNQFNSCEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFT 601

Query: 528 NLLGACSWHG----NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWND 575
           +LL ACS  G     +E  E   E    + P ++ +Y    D+    GR  D
Sbjct: 602 SLLCACSRSGMVTDGLEYFES-MEHKFHIAPNLK-HYASVVDLLGRAGRLED 651



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/443 (26%), Positives = 219/443 (49%), Gaps = 7/443 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF  MP  + +SWNA+++GY E+    + + LF  M++        ++++V+     
Sbjct: 249 ARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEA 308

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G  + G+ VH   I+ G   +  ++ SL+ M+S  G  D A  VF +++  D+V+W A+
Sbjct: 309 LGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAM 368

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+  ++ G  ++A + + +M    V P++  + S++ A    G    G  +H    + G 
Sbjct: 369 ISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGL 428

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            S  +V N+L+ MY +   +     VF  I +++ +SW ++    +      + L  F Q
Sbjct: 429 TSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQ 488

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M+L   KPN  T + +L AC+ +  +  GK++HAH ++  L  +  +  +L+DMY + G 
Sbjct: 489 MIL-SLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGR 547

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +E A   F+S   KD+ ++  ++T YAQ G+  +A++ F KM    +  +E T  S L  
Sbjct: 548 MEPAWNQFNS-CEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCA 606

Query: 364 CSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL-RDTA 421
           CS    + +G     S+  K     ++    ++V +  + G ++DA    K   +  D A
Sbjct: 607 CSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPA 666

Query: 422 SWNMMIGG---YVKHGLGEKALE 441
            W  ++     Y    LGE A +
Sbjct: 667 IWGALLNACRIYQNVELGELAAQ 689


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 196/589 (33%), Positives = 309/589 (52%), Gaps = 46/589 (7%)

Query: 52  FSLSTVLKGFANSGYIK-AGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFY 110
           F L+T++  +A  G ++ A +V   + +R     + F   +L+  Y++ G  D A  +F 
Sbjct: 53  FLLNTLVSTYARLGRLRDARRVFDEIPLR-----NTFSYNALLSAYARLGRPDEARALFE 107

Query: 111 RIKDPDVVAWGAIITCLDQ--QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ 168
            I DPD  ++ A++  L +  +G   +A +    M       N +   S + A     D 
Sbjct: 108 AIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASALSACAAEKDS 167

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228
           R GE +H ++ +     D  + +ALV MY +  R     RVF+A+  ++ VSWN+L + +
Sbjct: 168 RTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCY 227

Query: 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK-HSLDGN 287
           +      + L +F +M+  GF P+  T   ++ AC+ L+    G+Q+HAH +K   L  +
Sbjct: 228 EQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDD 287

Query: 288 HVVGTSLVDMYDKSG------CL-------------------------EDAGVAFDSLAN 316
            V+  +LVDMY K G      C+                         EDA V F  +  
Sbjct: 288 MVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVE 347

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL 376
           K++ A+  +I +YAQ GE E A++ F +++ + I    +T  + LN C  +A L  G+  
Sbjct: 348 KNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQA 407

Query: 377 HSIAVKTGHLLD------MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGY 430
           H   +K G   D      +FV  +LV MY K GSIDD   VF+  A RD  SWN MI GY
Sbjct: 408 HVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGY 467

Query: 431 VKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT 490
            ++G  + AL  F  ML     PD +T + VLSAC H GL++EG+++F S+ + +GITP+
Sbjct: 468 AQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPS 527

Query: 491 IKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLL 550
             H+ CM+D+LGRAG   E E  I +  + P++++W +LLGAC  H N+EL E  A +L 
Sbjct: 528 RDHYTCMVDLLGRAGHLKEAEELINDMPMEPDSVLWASLLGACRLHKNVELGEWTAGRLF 587

Query: 551 ELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           EL+P+    YV  S++ A  G+W +   VR  +  +G+ K+P CSWIE+
Sbjct: 588 ELDPQNSGPYVLLSNMYAEMGKWAEVFRVRRSMKDRGVSKQPGCSWIEI 636



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 131/503 (26%), Positives = 221/503 (43%), Gaps = 73/503 (14%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK---------------- 47
           A+RVF  +P  N  S+NALL+ YA  G   +   LF ++ D ++                
Sbjct: 71  ARRVFDEIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRG 130

Query: 48  ------KF-----------SKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSC 90
                 +F           + +S ++ L   A     + G+ VH +  R   A D  +  
Sbjct: 131 HAADALRFLAAMHADDFVLNAYSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRS 190

Query: 91  SLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKP 150
           +LVDMY+KC   ++A +VF  + + +VV+W ++ITC +Q G   EA  +F  M  +   P
Sbjct: 191 ALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSP 250

Query: 151 NQFVLTSLVRATTETGDQRCGESIHAVICKYG-FESDTLVGNALVSMYMENGRV------ 203
           ++  L+S++ A       R G  +HA + K      D ++ NALV MY + GR       
Sbjct: 251 DEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCI 310

Query: 204 --SYGSR-----------------------VFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
             S  SR                       VF  +  ++ ++WN L + +      ++ +
Sbjct: 311 FDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAI 370

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL------DGNHVVGT 292
           R+F Q+      P   T+  +L AC +++D+  G+Q H H +K         + +  VG 
Sbjct: 371 RLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGN 430

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           SLVDMY K+G ++D    F+ +A +D  ++ A+I  YAQ G A+ AL  F +M       
Sbjct: 431 SLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENP 490

Query: 353 NEFTLASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
           +  T+   L+ C     +  G R  HS+    G        T +V +  + G + +AE +
Sbjct: 491 DSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEEL 550

Query: 412 FKGSALR-DTASWNMMIGGYVKH 433
                +  D+  W  ++G    H
Sbjct: 551 INDMPMEPDSVLWASLLGACRLH 573



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 171/347 (49%), Gaps = 43/347 (12%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFS--KFSLSTVLK 59
           E A+RVF +MPE NVVSWN+L+  Y ++G   + + LF  M  M   FS  + +LS+V+ 
Sbjct: 203 EDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEM--MAAGFSPDEVTLSSVMS 260

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKF-LSCSLVDMYSKCGLA---------------- 102
             A     + G+ VHA  ++     D   L+ +LVDMY+KCG                  
Sbjct: 261 ACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIV 320

Query: 103 ---------------DNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESS 147
                          ++A  VF ++ + +V+AW  +I    Q G  +EA ++F  ++  S
Sbjct: 321 SETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDS 380

Query: 148 VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF------ESDTLVGNALVSMYMENG 201
           + P  +   +++ A     D + G+  H  + K GF      ESD  VGN+LV MY++ G
Sbjct: 381 IWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTG 440

Query: 202 RVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILK 261
            +  G++VFE +A +D+VSWNA+   +         L +F +ML     P+  T I +L 
Sbjct: 441 SIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLS 500

Query: 262 ACSSLSDVGFGKQ-LHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           AC     V  G++  H+ T  H +  +    T +VD+  ++G L++A
Sbjct: 501 ACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEA 547



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 107/395 (27%), Positives = 173/395 (43%), Gaps = 69/395 (17%)

Query: 155 LTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA 214
           L  L+R+       R     HA I K     +T + N LVS Y   GR+    RVF+ I 
Sbjct: 23  LADLLRSAPNLSGARAA---HARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIP 79

Query: 215 HQDSVSWNALFSR-------------FQDYESPDQ--------------------GLRIF 241
            +++ S+NAL S              F+    PDQ                     LR  
Sbjct: 80  LRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFL 139

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
             M    F  N  +F   L AC++  D   G+Q+H    +     +  + ++LVDMY K 
Sbjct: 140 AAMHADDFVLNAYSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKC 199

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
              EDA   FD++  +++ ++ ++IT Y Q G    AL  F +M   G   +E TL+S +
Sbjct: 200 ERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVM 259

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLL-DMFVSTALVAMYAKCG----------------- 403
           + C+ +A    GR +H+  VK   L  DM ++ ALV MYAKCG                 
Sbjct: 260 SACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSI 319

Query: 404 --------------SIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDE 449
                         +++DA+ VF     ++  +WN++I  Y ++G  E+A+  F  +  +
Sbjct: 320 VSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRD 379

Query: 450 GYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKK 483
              P   T+  VL+AC ++  ++ G++ H   +K+
Sbjct: 380 SIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKE 414



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 130/294 (44%), Gaps = 40/294 (13%)

Query: 256 FIVILKACSSLSDV-------GFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
            +  L+A S L+D+          +  HA  +K  + G   +  +LV  Y + G L DA 
Sbjct: 13  LVAHLRASSPLADLLRSAPNLSGARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDAR 72

Query: 309 VAFDSLANKDLFAYTAIITSYAQ---------------------------------AGEA 335
             FD +  ++ F+Y A++++YA+                                  G A
Sbjct: 73  RVFDEIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHA 132

Query: 336 EMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTAL 395
             AL+    M  +    N ++ AS L+ C+       G  +H +  ++ H  D+ + +AL
Sbjct: 133 ADALRFLAAMHADDFVLNAYSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSAL 192

Query: 396 VAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE 455
           V MYAKC   +DA  VF     R+  SWN +I  Y ++G   +AL  F  M+  G+ PDE
Sbjct: 193 VDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDE 252

Query: 456 ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTE 509
           +T   V+SAC+ +    EG++  + + K   +   +     ++D+  + G+  E
Sbjct: 253 VTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWE 306



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 128/294 (43%), Gaps = 20/294 (6%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ VF  M E NV++WN L+  YA++G+ ++ + LF  +K      + ++   VL  
Sbjct: 335 VEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNA 394

Query: 61  FANSGYIKAGQVVHAMAIR------LGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
             N   ++ GQ  H   ++       G   D F+  SLVDMY K G  D+  KVF R+  
Sbjct: 395 CGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAA 454

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES- 173
            D V+W A+I    Q G  ++A  +F  M  S+  P+   +  ++ A   +G    G   
Sbjct: 455 RDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRY 514

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-DSVSWNALFSRFQDYE 232
            H++   +G          +V +    G +     +   +  + DSV W +L    + ++
Sbjct: 515 FHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEPDSVLWASLLGACRLHK 574

Query: 233 SPDQGL----RIFY--------QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ 274
           + + G     R+F          +LL      M  +  + +   S+ D G  KQ
Sbjct: 575 NVELGEWTAGRLFELDPQNSGPYVLLSNMYAEMGKWAEVFRVRRSMKDRGVSKQ 628


>gi|225441775|ref|XP_002277828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Vitis vinifera]
          Length = 773

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 200/597 (33%), Positives = 324/597 (54%), Gaps = 1/597 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF  M   N ++W  L+ G+ +  D + V  +   M  + ++F++ + S +L+   +
Sbjct: 132 AQSVFDEMLVRNTITWTTLIKGHLQVNDVESVFRIAREMYWVGEEFNEHTCSVILQACDS 191

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G+ +H   I+ G   D F+  SL+ MYS+CG    A KV+  +   DV     +
Sbjct: 192 LENLVRGEQIHGFVIKRGFDEDVFVGTSLISMYSRCGDLGAAEKVYSNLAYKDVRCLNFM 251

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   + GC ++A  +F  +  S ++PN +  T+++ A     D      +H +  K G 
Sbjct: 252 ISEYGKAGCGEKAIGVFLHLLGSGLEPNDYTFTNVISACNGDIDVEVLRVLHGMCIKCGC 311

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             +  VGNA+VS+Y+++G +    + F  +  ++ VSW AL S +    +  + L  F Q
Sbjct: 312 GDEISVGNAIVSVYVKHGMLEEAEKSFCGMGERNLVSWTALLSGYVKNGNGKKALEGFSQ 371

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           +L  G   + C F  +L  CS   ++G G Q+H   +K     +  VGT+L+D+Y K   
Sbjct: 372 ILELGVGFDSCCFATLLDGCSECKNLGLGLQIHGFVVKLGYVHDVSVGTALIDLYAKCRK 431

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L  A + F SL +K++ ++ AI++ Y  A E E A+  F ++RL  IK +  T A  L+ 
Sbjct: 432 LRSARLVFHSLLDKNIVSFNAILSGYIGADE-EDAMALFSQLRLADIKPDSVTFARLLSL 490

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
            +  A L  G+ LH+  +KTG   +  V  A++ MYAKCGSI DA  +F      D+ SW
Sbjct: 491 SADQACLVKGKCLHAYIIKTGFEANPSVGNAVITMYAKCGSIGDACQLFYSMNYLDSISW 550

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I  Y  HG G KAL  F  M  E +VPDEIT + VL ACS+ GL+EEG   F+ ++ 
Sbjct: 551 NAVISAYALHGQGRKALILFEEMKKEEFVPDEITILSVLQACSYSGLLEEGFCLFNDMES 610

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            YGI P I+HFACM+D+LGRAG  +E  +FI  +  + + L+W  L+  C  HG++   +
Sbjct: 611 KYGIKPEIEHFACMVDLLGRAGYLSEAMSFINRSPFSGSPLLWRTLVHVCKLHGDLNFGQ 670

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
             ++ LL+L P+   +Y+  S++ A  G  N+ + VR +++   + KE   SWIE+D
Sbjct: 671 IASKHLLDLAPEEAGSYILVSNLYAGGGMLNEAARVRTVMNDLKVSKEAGSSWIEID 727



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 134/506 (26%), Positives = 238/506 (47%), Gaps = 14/506 (2%)

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           SG +  GQ +HA   +LG   D F   +LV++Y K     +A  VF  +   + + W  +
Sbjct: 91  SGDLMLGQAIHAFLAKLGYQNDAFRGNNLVNLYGKFNKLGDAQSVFDEMLVRNTITWTTL 150

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q    +   +I   M     + N+   + +++A     +   GE IH  + K GF
Sbjct: 151 IKGHLQVNDVESVFRIAREMYWVGEEFNEHTCSVILQACDSLENLVRGEQIHGFVIKRGF 210

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           + D  VG +L+SMY   G +    +V+  +A++D    N + S +      ++ + +F  
Sbjct: 211 DEDVFVGTSLISMYSRCGDLGAAEKVYSNLAYKDVRCLNFMISEYGKAGCGEKAIGVFLH 270

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           +L  G +PN  TF  ++ AC+   DV   + LH   IK        VG ++V +Y K G 
Sbjct: 271 LLGSGLEPNDYTFTNVISACNGDIDVEVLRVLHGMCIKCGCGDEISVGNAIVSVYVKHGM 330

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           LE+A  +F  +  ++L ++TA+++ Y + G  + AL+ F ++   G+  +    A+ L+G
Sbjct: 331 LEEAEKSFCGMGERNLVSWTALLSGYVKNGNGKKALEGFSQILELGVGFDSCCFATLLDG 390

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           CS    L  G  +H   VK G++ D+ V TAL+ +YAKC  +  A  VF     ++  S+
Sbjct: 391 CSECKNLGLGLQIHGFVVKLGYVHDVSVGTALIDLYAKCRKLRSARLVFHSLLDKNIVSF 450

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK-KHFSSIK 482
           N ++ GY+     E A+  F  +      PD +TF  +LS  +    + +GK  H   IK
Sbjct: 451 NAILSGYIGAD-EEDAMALFSQLRLADIKPDSVTFARLLSLSADQACLVKGKCLHAYIIK 509

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEI-ENFITETKLTPNALVWENLLGACSWHGNIEL 541
             +   P++ +   +I +  + G   +  + F +   L  +++ W  ++ A + HG    
Sbjct: 510 TGFEANPSVGN--AVITMYAKCGSIGDACQLFYSMNYL--DSISWNAVISAYALHGQ--- 562

Query: 542 DEKDAEKLLELEPKMESNYVFPSDIS 567
                 K L L  +M+     P +I+
Sbjct: 563 ----GRKALILFEEMKKEEFVPDEIT 584



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 115/393 (29%), Positives = 198/393 (50%), Gaps = 7/393 (1%)

Query: 158 LVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQD 217
           L++ +  +GD   G++IHA + K G+++D   GN LV++Y +  ++     VF+ +  ++
Sbjct: 84  LLQISIGSGDLMLGQAIHAFLAKLGYQNDAFRGNNLVNLYGKFNKLGDAQSVFDEMLVRN 143

Query: 218 SVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHA 277
           +++W  L          +   RI  +M   G + N  T  VIL+AC SL ++  G+Q+H 
Sbjct: 144 TITWTTLIKGHLQVNDVESVFRIAREMYWVGEEFNEHTCSVILQACDSLENLVRGEQIHG 203

Query: 278 HTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEM 337
             IK   D +  VGTSL+ MY + G L  A   + +LA KD+     +I+ Y +AG  E 
Sbjct: 204 FVIKRGFDEDVFVGTSLISMYSRCGDLGAAEKVYSNLAYKDVRCLNFMISEYGKAGCGEK 263

Query: 338 ALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVA 397
           A+  F  +   G++ N++T  + ++ C+    +   R+LH + +K G   ++ V  A+V+
Sbjct: 264 AIGVFLHLLGSGLEPNDYTFTNVISACNGDIDVEVLRVLHGMCIKCGCGDEISVGNAIVS 323

Query: 398 MYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEIT 457
           +Y K G +++AE  F G   R+  SW  ++ GYVK+G G+KALE F  +L+ G   D   
Sbjct: 324 VYVKHGMLEEAEKSFCGMGERNLVSWTALLSGYVKNGNGKKALEGFSQILELGVGFDSCC 383

Query: 458 FVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET 517
           F  +L  CS    +  G +    + K+ G    +     +ID+  +  K       +  +
Sbjct: 384 FATLLDGCSECKNLGLGLQIHGFVVKL-GYVHDVSVGTALIDLYAKCRKLRSAR-LVFHS 441

Query: 518 KLTPNALVWENLLGACSWHGNIELDEKDAEKLL 550
            L  N + +  +L      G I  DE+DA  L 
Sbjct: 442 LLDKNIVSFNAILS-----GYIGADEEDAMALF 469



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 82/270 (30%), Positives = 154/270 (57%), Gaps = 13/270 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A++ F  M E N+VSW ALL+GY ++G+G+K +  F  + ++   F     +T+L G
Sbjct: 331 LEEAEKSFCGMGERNLVSWTALLSGYVKNGNGKKALEGFSQILELGVGFDSCCFATLLDG 390

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    +  G  +H   ++LG   D  +  +L+D+Y+KC    +A  VF+ + D ++V++
Sbjct: 391 CSECKNLGLGLQIHGFVVKLGYVHDVSVGTALIDLYAKCRKLRSARLVFHSLLDKNIVSF 450

Query: 121 GAIITCL---DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC---GESI 174
            AI++     D+    ++A  +F+ +R + +KP+     +  R  + + DQ C   G+ +
Sbjct: 451 NAILSGYIGADE----EDAMALFSQLRLADIKPDS---VTFARLLSLSADQACLVKGKCL 503

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           HA I K GFE++  VGNA+++MY + G +    ++F ++ + DS+SWNA+ S +  +   
Sbjct: 504 HAYIIKTGFEANPSVGNAVITMYAKCGSIGDACQLFYSMNYLDSISWNAVISAYALHGQG 563

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACS 264
            + L +F +M  + F P+  T + +L+ACS
Sbjct: 564 RKALILFEEMKKEEFVPDEITILSVLQACS 593


>gi|357147965|ref|XP_003574566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 923

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 194/600 (32%), Positives = 330/600 (55%), Gaps = 8/600 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK----KFSKFSLSTVLK 59
           A+++F  M E + VSWNAL++ Y+  G   K   +F    DM +    +    +L +++ 
Sbjct: 199 AEKLFYRMEERDTVSWNALVSMYSHEGLCSKSFRVF---SDMRRGGLLRHDATTLCSLIS 255

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             A+S Y+  G  VH++ +R G      +  +LV+MYS  G   +A  +F+ +   D+++
Sbjct: 256 VCASSDYVSYGSGVHSLCLRTGLHSYIPVVNALVNMYSSAGKLADAEFLFWNMSRRDLIS 315

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  +I+   Q G   +A K    +  ++  P++   +S + A +  G    G  +HA+  
Sbjct: 316 WNTMISSYVQNGNNMDALKTLGQLLHTNEGPDRMTFSSALGACSSPGALMDGRMVHAMTL 375

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           +     + LVGN+L++MY +   +    R+F+ + + D VS N L   +   E   + ++
Sbjct: 376 QLSLHHNLLVGNSLITMYGKCNSIEDAERIFQLMPNHDVVSCNILIGSYAVLEDGTKAMQ 435

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDV-GFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           +F+ M     K N  T + IL + +S +D+  +G  LHA+TI      +  V  SL+ MY
Sbjct: 436 VFFWMRRGEVKLNYITIVNILGSFTSSNDLRNYGLPLHAYTIHAGFLSDDYVSNSLITMY 495

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G LE +   F  + N+ + ++ A+I +  Q G  E +LK F  MR +G   +   LA
Sbjct: 496 AKCGDLESSNNVFQRIINRSVVSWNAMIAANVQHGHGEESLKLFMDMRHDGNGLDHICLA 555

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
            C++  + +A+L  G  LH + +K G   D  V  A + MY KCG +D+   +    A+R
Sbjct: 556 ECMSSSASLASLEEGMQLHGLGLKCGLGNDSHVVNAAMDMYGKCGKMDEMLKMLPDPAIR 615

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
               WN +I GY ++G  ++A E F+ M+  G  PD +TFV +LSACSH GL+++G  ++
Sbjct: 616 PQQCWNTLISGYARYGYFKEAEETFKHMISVGRTPDYVTFVTLLSACSHAGLVDKGIDYY 675

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           +S+  ++G++P IKH  C++DILGR G+F E E FI +  + PN L+W +LL +   H N
Sbjct: 676 NSMSSVFGVSPGIKHCVCIVDILGRLGRFAEAEKFIEDMPVLPNDLIWRSLLSSSRTHKN 735

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           +++  K A++LLEL+P  +S YV  S++ AT  RW+D   VR+ + +  + K P+CSW++
Sbjct: 736 LDIGRKAAKRLLELDPFDDSAYVLLSNLYATSARWSDVDRVRSHMKTINLNKIPACSWLK 795



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 158/552 (28%), Positives = 274/552 (49%), Gaps = 6/552 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R+F  MPE NVVSW AL+   + +G  ++ +  +  M+      +  + +TV+    +
Sbjct: 98  AQRLFWEMPERNVVSWTALMVALSSNGHLEEALGYYRRMRRERIACNANAFATVVSLCGS 157

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                AG  V +  I  G      ++ SL+ M    G   +A K+FYR+++ D V+W A+
Sbjct: 158 LEDEVAGLQVFSHVIVSGLQRQVSVANSLISMLGNLGRVHDAEKLFYRMEERDTVSWNAL 217

Query: 124 ITCLDQQGCCQEAAKIFNLMRESS-VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           ++    +G C ++ ++F+ MR    ++ +   L SL+     +     G  +H++  + G
Sbjct: 218 VSMYSHEGLCSKSFRVFSDMRRGGLLRHDATTLCSLISVCASSDYVSYGSGVHSLCLRTG 277

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
             S   V NALV+MY   G+++    +F  ++ +D +SWN + S +    +    L+   
Sbjct: 278 LHSYIPVVNALVNMYSSAGKLADAEFLFWNMSRRDLISWNTMISSYVQNGNNMDALKTLG 337

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           Q+L     P+  TF   L ACSS   +  G+ +HA T++ SL  N +VG SL+ MY K  
Sbjct: 338 QLLHTNEGPDRMTFSSALGACSSPGALMDGRMVHAMTLQLSLHHNLLVGNSLITMYGKCN 397

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            +EDA   F  + N D+ +   +I SYA   +   A++ F  MR   +K N  T+ + L 
Sbjct: 398 SIEDAERIFQLMPNHDVVSCNILIGSYAVLEDGTKAMQVFFWMRRGEVKLNYITIVNILG 457

Query: 363 GCSPVATLAN-GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
             +    L N G  LH+  +  G L D +VS +L+ MYAKCG ++ +  VF+    R   
Sbjct: 458 SFTSSNDLRNYGLPLHAYTIHAGFLSDDYVSNSLITMYAKCGDLESSNNVFQRIINRSVV 517

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSS 480
           SWN MI   V+HG GE++L+ F  M  +G   D I     +S+ + +  +EEG + H   
Sbjct: 518 SWNAMIAANVQHGHGEESLKLFMDMRHDGNGLDHICLAECMSSSASLASLEEGMQLHGLG 577

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +K   G    + + A  +D+ G+ GK  E+   + +  + P    W  L+   + +G  +
Sbjct: 578 LKCGLGNDSHVVNAA--MDMYGKCGKMDEMLKMLPDPAIRPQQ-CWNTLISGYARYGYFK 634

Query: 541 LDEKDAEKLLEL 552
             E+  + ++ +
Sbjct: 635 EAEETFKHMISV 646



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/449 (25%), Positives = 213/449 (47%), Gaps = 2/449 (0%)

Query: 18  SWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKA-GQVVHAM 76
           SW   ++G    G       +   M++     S F+L++++         +A G  +HA+
Sbjct: 10  SWYTAISGCVRCGRDSTAFSMLRGMRERGVPLSGFALASLVTACERWEEGRACGAAIHAL 69

Query: 77  AIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEA 136
             + G  ++ ++  +L+ +Y       +A ++F+ + + +VV+W A++  L   G  +EA
Sbjct: 70  TQKAGLMVNVYIGTALLHLYGSQKHVLDAQRLFWEMPERNVVSWTALMVALSSNGHLEEA 129

Query: 137 AKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSM 196
              +  MR   +  N     ++V       D+  G  + + +   G +    V N+L+SM
Sbjct: 130 LGYYRRMRRERIACNANAFATVVSLCGSLEDEVAGLQVFSHVIVSGLQRQVSVANSLISM 189

Query: 197 YMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG-FKPNMCT 255
               GRV    ++F  +  +D+VSWNAL S +       +  R+F  M   G  + +  T
Sbjct: 190 LGNLGRVHDAEKLFYRMEERDTVSWNALVSMYSHEGLCSKSFRVFSDMRRGGLLRHDATT 249

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
              ++  C+S   V +G  +H+  ++  L     V  +LV+MY  +G L DA   F +++
Sbjct: 250 LCSLISVCASSDYVSYGSGVHSLCLRTGLHSYIPVVNALVNMYSSAGKLADAEFLFWNMS 309

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRL 375
            +DL ++  +I+SY Q G    ALK   ++       +  T +S L  CS    L +GR+
Sbjct: 310 RRDLISWNTMISSYVQNGNNMDALKTLGQLLHTNEGPDRMTFSSALGACSSPGALMDGRM 369

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           +H++ ++     ++ V  +L+ MY KC SI+DAE +F+     D  S N++IG Y     
Sbjct: 370 VHAMTLQLSLHHNLLVGNSLITMYGKCNSIEDAERIFQLMPNHDVVSCNILIGSYAVLED 429

Query: 436 GEKALEAFRMMLDEGYVPDEITFVVVLSA 464
           G KA++ F  M       + IT V +L +
Sbjct: 430 GTKAMQVFFWMRRGEVKLNYITIVNILGS 458



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 167/352 (47%), Gaps = 7/352 (1%)

Query: 131 GC--CQEAAKIFNL---MRESSVKPNQFVLTSLVRATTETGDQR-CGESIHAVICKYGFE 184
           GC  C   +  F++   MRE  V  + F L SLV A     + R CG +IHA+  K G  
Sbjct: 17  GCVRCGRDSTAFSMLRGMRERGVPLSGFALASLVTACERWEEGRACGAAIHALTQKAGLM 76

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
            +  +G AL+ +Y     V    R+F  +  ++ VSW AL          ++ L  + +M
Sbjct: 77  VNVYIGTALLHLYGSQKHVLDAQRLFWEMPERNVVSWTALMVALSSNGHLEEALGYYRRM 136

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
             +    N   F  ++  C SL D   G Q+ +H I   L     V  SL+ M    G +
Sbjct: 137 RRERIACNANAFATVVSLCGSLEDEVAGLQVFSHVIVSGLQRQVSVANSLISMLGNLGRV 196

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG-IKSNEFTLASCLNG 363
            DA   F  +  +D  ++ A+++ Y+  G    + + F  MR  G ++ +  TL S ++ 
Sbjct: 197 HDAEKLFYRMEERDTVSWNALVSMYSHEGLCSKSFRVFSDMRRGGLLRHDATTLCSLISV 256

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+    ++ G  +HS+ ++TG    + V  ALV MY+  G + DAE +F   + RD  SW
Sbjct: 257 CASSDYVSYGSGVHSLCLRTGLHSYIPVVNALVNMYSSAGKLADAEFLFWNMSRRDLISW 316

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           N MI  YV++G    AL+    +L     PD +TF   L ACS  G + +G+
Sbjct: 317 NTMISSYVQNGNNMDALKTLGQLLHTNEGPDRMTFSSALGACSSPGALMDGR 368



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 132/265 (49%), Gaps = 1/265 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+R+F+ MP  +VVS N L+  YA   DG K M +F  M+  E K +  ++  +L  
Sbjct: 399 IEDAERIFQLMPNHDVVSCNILIGSYAVLEDGTKAMQVFFWMRRGEVKLNYITIVNILGS 458

Query: 61  FANSGYIKA-GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           F +S  ++  G  +HA  I  G   D ++S SL+ MY+KCG  +++  VF RI +  VV+
Sbjct: 459 FTSSNDLRNYGLPLHAYTIHAGFLSDDYVSNSLITMYAKCGDLESSNNVFQRIINRSVVS 518

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W A+I    Q G  +E+ K+F  MR      +   L   + ++        G  +H +  
Sbjct: 519 WNAMIAANVQHGHGEESLKLFMDMRHDGNGLDHICLAECMSSSASLASLEEGMQLHGLGL 578

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K G  +D+ V NA + MY + G++    ++    A +    WN L S +  Y    +   
Sbjct: 579 KCGLGNDSHVVNAAMDMYGKCGKMDEMLKMLPDPAIRPQQCWNTLISGYARYGYFKEAEE 638

Query: 240 IFYQMLLKGFKPNMCTFIVILKACS 264
            F  M+  G  P+  TF+ +L ACS
Sbjct: 639 TFKHMISVGRTPDYVTFVTLLSACS 663



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 122/268 (45%), Gaps = 3/268 (1%)

Query: 272 GKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQ 331
           G  +HA T K  L  N  +GT+L+ +Y     + DA   F  +  +++ ++TA++ + + 
Sbjct: 63  GAAIHALTQKAGLMVNVYIGTALLHLYGSQKHVLDAQRLFWEMPERNVVSWTALMVALSS 122

Query: 332 AGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFV 391
            G  E AL  +R+MR E I  N    A+ ++ C  +     G  + S  + +G    + V
Sbjct: 123 NGHLEEALGYYRRMRRERIACNANAFATVVSLCGSLEDEVAGLQVFSHVIVSGLQRQVSV 182

Query: 392 STALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGY 451
           + +L++M    G + DAE +F     RDT SWN ++  Y   GL  K+   F  M   G 
Sbjct: 183 ANSLISMLGNLGRVHDAEKLFYRMEERDTVSWNALVSMYSHEGLCSKSFRVFSDMRRGGL 242

Query: 452 VP-DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEI 510
           +  D  T   ++S C+    +  G    S   +  G+   I     ++++   AGK  + 
Sbjct: 243 LRHDATTLCSLISVCASSDYVSYGSGVHSLCLRT-GLHSYIPVVNALVNMYSSAGKLADA 301

Query: 511 ENFITETKLTPNALVWENLLGACSWHGN 538
           E F+       + + W  ++ +   +GN
Sbjct: 302 E-FLFWNMSRRDLISWNTMISSYVQNGN 328



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 78/169 (46%), Gaps = 6/169 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E +  VF+ +   +VVSWNA++    + G G++ + LF  M+          L+  +  
Sbjct: 501 LESSNNVFQRIINRSVVSWNAMIAANVQHGHGEESLKLFMDMRHDGNGLDHICLAECMSS 560

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA- 119
            A+   ++ G  +H + ++ G   D  +  + +DMY KCG  D  LK+   + DP +   
Sbjct: 561 SASLASLEEGMQLHGLGLKCGLGNDSHVVNAAMDMYGKCGKMDEMLKM---LPDPAIRPQ 617

Query: 120 --WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
             W  +I+   + G  +EA + F  M      P+     +L+ A +  G
Sbjct: 618 QCWNTLISGYARYGYFKEAEETFKHMISVGRTPDYVTFVTLLSACSHAG 666



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 94/209 (44%), Gaps = 7/209 (3%)

Query: 322 YTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT-LANGRLLHSIA 380
           YTAI +   + G    A    R MR  G+  + F LAS +  C       A G  +H++ 
Sbjct: 12  YTAI-SGCVRCGRDSTAFSMLRGMRERGVPLSGFALASLVTACERWEEGRACGAAIHALT 70

Query: 381 VKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKAL 440
            K G ++++++ TAL+ +Y     + DA+ +F     R+  SW  ++     +G  E+AL
Sbjct: 71  QKAGLMVNVYIGTALLHLYGSQKHVLDAQRLFWEMPERNVVSWTALMVALSSNGHLEEAL 130

Query: 441 EAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDI 500
             +R M  E    +   F  V+S C  +     G + FS +  + G+   +     +I +
Sbjct: 131 GYYRRMRRERIACNANAFATVVSLCGSLEDEVAGLQVFSHV-IVSGLQRQVSVANSLISM 189

Query: 501 LGRAGKFTEIENFITETK----LTPNALV 525
           LG  G+  + E      +    ++ NALV
Sbjct: 190 LGNLGRVHDAEKLFYRMEERDTVSWNALV 218


>gi|115468242|ref|NP_001057720.1| Os06g0506100 [Oryza sativa Japonica Group]
 gi|52075894|dbj|BAD45840.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113595760|dbj|BAF19634.1| Os06g0506100 [Oryza sativa Japonica Group]
          Length = 766

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 196/601 (32%), Positives = 321/601 (53%), Gaps = 4/601 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF  MP  N VSW +++  + ++G     + LF SM        +F+L + ++    
Sbjct: 105 ARQVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTE 164

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G +  G+ VHA A++     D  +  +LV MYSK GL D+   +F RIKD D+++WG+I
Sbjct: 165 LGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSI 224

Query: 124 ITCLDQQGCCQEAAKIFN-LMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I    QQG   EA ++F  ++ E S  PN+F   S  RA    G    GE IH +  KY 
Sbjct: 225 IAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYR 284

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            + D  VG +L  MY     +      F  I   D VSWN++ + +       + L +F 
Sbjct: 285 LDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFS 344

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M   G +P+  T   +L AC     +  G+ +H++ +K  LDG+  V  SL+ MY +  
Sbjct: 345 EMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCS 404

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            L  A   F  + ++D+  + +I+T+ AQ    E  LK F  +       +  +L + L+
Sbjct: 405 DLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLS 464

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK--GSALRDT 420
             + +      + +H+ A K G + D  +S  L+  YAKCGS+DDA  +F+  G+  RD 
Sbjct: 465 ASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNN-RDV 523

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SW+ +I GY + G  ++A + F  M   G  P+ +TF+ VL+ACS +G + EG  ++S 
Sbjct: 524 FSWSSLIVGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSI 583

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           ++  YGI PT +H +C++D+L RAGK TE  NFI +    P+ ++W+ LL A   H ++E
Sbjct: 584 MEPEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDME 643

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           + ++ AE +L ++P   + YV   +I A  G WN+F+ ++  + + G+KK P  SW+++ 
Sbjct: 644 MGKRAAEGILNIDPSHSAAYVLLCNIYAASGNWNEFARLKKAMRTSGVKKSPGKSWVKLK 703

Query: 601 G 601
           G
Sbjct: 704 G 704



 Score =  214 bits (546), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 130/393 (33%), Positives = 205/393 (52%), Gaps = 1/393 (0%)

Query: 85  DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMR 144
           +  L   L+ MY +C   D+A +VF  +   + V+W ++I    Q G   +A  +F+ M 
Sbjct: 85  NTVLGNHLITMYGRCAAPDSARQVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSML 144

Query: 145 ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVS 204
            S    +QF L S VRA TE GD   G  +HA   K    SD +V NALV+MY +NG V 
Sbjct: 145 RSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVD 204

Query: 205 YGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG-FKPNMCTFIVILKAC 263
            G  +FE I  +D +SW ++ + F       + L++F +M+++G   PN   F    +AC
Sbjct: 205 DGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRAC 264

Query: 264 SSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYT 323
            ++    +G+Q+H  +IK+ LD +  VG SL DMY +   L+ A VAF  +   DL ++ 
Sbjct: 265 GAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWN 324

Query: 324 AIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKT 383
           +I+ +Y+  G    AL  F +MR  G++ +  T+   L  C     L +GRL+HS  VK 
Sbjct: 325 SIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKL 384

Query: 384 GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF 443
           G   D+ V  +L++MYA+C  +  A  VF     +D  +WN ++    +H   E+ L+ F
Sbjct: 385 GLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLF 444

Query: 444 RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            ++       D I+   VLSA + +G  E  K+
Sbjct: 445 SLLNKSEPSLDRISLNNVLSASAELGYFEMVKQ 477



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/373 (28%), Positives = 181/373 (48%), Gaps = 3/373 (0%)

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           +T++GN L++MY          +VF+ +  ++ VSW ++ +           L +F  ML
Sbjct: 85  NTVLGNHLITMYGRCAAPDSARQVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSML 144

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
             G   +       ++AC+ L DVG G+Q+HAH +K     + +V  +LV MY K+G ++
Sbjct: 145 RSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVD 204

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI-KSNEFTLASCLNGC 364
           D  + F+ + +KDL ++ +II  +AQ G    AL+ FR+M +EG    NEF   S    C
Sbjct: 205 DGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRAC 264

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
             V +   G  +H +++K     D++V  +L  MYA+C ++D A   F      D  SWN
Sbjct: 265 GAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWN 324

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
            ++  Y   GL  +AL  F  M D G  PD IT   +L AC     +  G+   S + K+
Sbjct: 325 SIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKL 384

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEK 544
            G+   +     ++ +  R    +   +   E K   + + W ++L AC+ H + E   K
Sbjct: 385 -GLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIK-DQDVVTWNSILTACAQHNHPEEVLK 442

Query: 545 DAEKLLELEPKME 557
               L + EP ++
Sbjct: 443 LFSLLNKSEPSLD 455



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 171/347 (49%), Gaps = 11/347 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+  F  +   ++VSWN+++N Y+  G   + + LF  M+D   +    ++  +L  
Sbjct: 305 LDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCA 364

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 +  G+++H+  ++LG   D  +  SL+ MY++C    +A+ VF+ IKD DVV W
Sbjct: 365 CVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTW 424

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +I+T   Q    +E  K+F+L+ +S    ++  L +++ A+ E G     + +HA   K
Sbjct: 425 NSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFK 484

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALFSRFQDYESPDQGLR 239
            G   D ++ N L+  Y + G +    R+FE +  ++D  SW++L   +  +    +   
Sbjct: 485 AGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEAFD 544

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS-----L 294
           +F +M   G +PN  TFI +L ACS +  V  G   + ++I     G  +V T      +
Sbjct: 545 LFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEG--CYYYSIMEPEYG--IVPTREHCSCI 600

Query: 295 VDMYDKSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALK 340
           VD+  ++G L +A    D +    D+  +  ++ +     + EM  +
Sbjct: 601 VDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKR 647



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 141/291 (48%), Gaps = 12/291 (4%)

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHS-------LDGNHVVGTSLVDMYDKSGCLEDAG 308
           +  ++ ACS L  +  G+++H H +  S       L GN V+G  L+ MY +    + A 
Sbjct: 47  YAALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSAR 106

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
             FD +  ++  ++ ++I ++ Q G A  AL  F  M   G  +++F L S +  C+ + 
Sbjct: 107 QVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELG 166

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
            +  GR +H+ A+K+    D+ V  ALV MY+K G +DD   +F+    +D  SW  +I 
Sbjct: 167 DVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIA 226

Query: 429 GYVKHGLGEKALEAFRMMLDEG-YVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYG 486
           G+ + G   +AL+ FR M+ EG + P+E  F     AC  +G  E G++ H  SIK  Y 
Sbjct: 227 GFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIK--YR 284

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           +   +     + D+  R              +  P+ + W +++ A S  G
Sbjct: 285 LDRDLYVGCSLSDMYARCKNLDSARVAFYRIE-APDLVSWNSIVNAYSVEG 334


>gi|296090287|emb|CBI40106.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 184/550 (33%), Positives = 320/550 (58%), Gaps = 4/550 (0%)

Query: 53  SLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI 112
           +LS++L   + +  ++ G  +HA  ++ G   D F+S  +++MY+KCG    A +VF  +
Sbjct: 5   TLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEM 64

Query: 113 KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172
            + ++V+W A+I+  DQ G  Q A  +++ M    + PN++V  S++ A         G+
Sbjct: 65  FEKNLVSWSAMISGYDQAGEPQMAIDLYSQM---FLVPNEYVFASVISACASLSAVTLGQ 121

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
            IH+   K+G+ES + V N+L+SMYM+  + S    VF      + VS+NAL + F + +
Sbjct: 122 KIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFVENQ 181

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
             ++GL  F  M  +G  P+   F+ +L  C++  ++  G +LH  T+K +LD    +G 
Sbjct: 182 QLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTPFIGN 241

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE-GIK 351
            ++ MY +   +++A  AF  +  KD+ ++  +I + +   +    L+ F+ M  E  ++
Sbjct: 242 VIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTEETNVR 301

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            ++FT  S L  C+ +A++++G+ +H+  ++T    D+ V  ALV MYAKCG I  A  +
Sbjct: 302 PDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLGVGNALVNMYAKCGCIGYAYDI 361

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F      +  SWN +I G+  HGLGE+A+E F  M   G  PD +TF+ +L+AC+H GL+
Sbjct: 362 FSKMVHHNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGLLTACNHAGLV 421

Query: 472 EEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLG 531
           ++G+ +F+S+++ YGI P I+HF+C+ID+LGRAG+  E E ++ +     + +V  +LL 
Sbjct: 422 DKGQLYFNSMEETYGIAPDIEHFSCLIDMLGRAGRLNEAEEYMRKFPFWNDPVVLVSLLS 481

Query: 532 ACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
           A   HG++ + E+ A+ LL+L+P   S YV  S++ A+ G W+  +  R  L   G+KKE
Sbjct: 482 ASRLHGDVVIGERLAKWLLKLQPVTTSPYVLLSNLYASDGMWDSVAEARKRLKGSGLKKE 541

Query: 592 PSCSWIEVDG 601
           P  S IEV+G
Sbjct: 542 PGHSLIEVNG 551



 Score =  208 bits (530), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 119/424 (28%), Positives = 215/424 (50%), Gaps = 10/424 (2%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
            A++VF  M E N+VSW+A+++GY ++G+ Q  + L+  M  +    +++  ++V+   A
Sbjct: 56  FARQVFDEMFEKNLVSWSAMISGYDQAGEPQMAIDLYSQMFLVP---NEYVFASVISACA 112

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           +   +  GQ +H+ +++ G     F+S SL+ MY KC    +AL VF    +P+ V++ A
Sbjct: 113 SLSAVTLGQKIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNA 172

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +IT   +    +   + F LMR+  + P++F    ++   T T + + G  +H    K  
Sbjct: 173 LITGFVENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLN 232

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            +S   +GN +++MY E   +    + F  I  +D +SWN L +     +   +GLR+F 
Sbjct: 233 LDSTPFIGNVIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSHCDDHAKGLRVFK 292

Query: 243 QMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            M  +   +P+  TF   L AC+ L+ +  GKQ+HAH ++  L  +  VG +LV+MY K 
Sbjct: 293 HMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLGVGNALVNMYAKC 352

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           GC+  A   F  + + +L ++  II  +   G  E A++ F +M   GI+ +  T    L
Sbjct: 353 GCIGYAYDIFSKMVHHNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGLL 412

Query: 362 NGCSPVATLANGRL-LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
             C+    +  G+L  +S+    G   D+   + L+ M  + G +++AE       +R  
Sbjct: 413 TACNHAGLVDKGQLYFNSMEETYGIAPDIEHFSCLIDMLGRAGRLNEAEEY-----MRKF 467

Query: 421 ASWN 424
             WN
Sbjct: 468 PFWN 471


>gi|77554180|gb|ABA96976.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 780

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 198/598 (33%), Positives = 321/598 (53%), Gaps = 8/598 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+RVF  MPE +VVSWN+L++ +  +G          SM       +  SL +V+     
Sbjct: 173 ARRVFDEMPERDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGT 232

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
               K G  +HA+A+++G      L+ +LVDMY K G  + +++VF  + + + V+W + 
Sbjct: 233 EQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSA 292

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I C    G   +  ++F  M E +V P    L+SL+ A  E G    G  +H    K   
Sbjct: 293 IGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAM 352

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           + D  V N+LV MY + G +   S +FE +  ++ VSWNA+ +      +  +  R+   
Sbjct: 353 DLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTD 412

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G  PN  T + +L AC+ ++ +  GKQ+HA +I+  L  +  +  +L+DMY K G 
Sbjct: 413 MQKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQ 472

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L  A   F+  + KD  +Y  +I  Y+Q+     +L  F++MR  GI  +  +    L+ 
Sbjct: 473 LSLARNIFER-SEKDDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSA 531

Query: 364 CSPVATLANGRLLHSIAVK---TGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           C+ ++   +G+ +H + V+   +GH    F+S +L+ +Y K G +  A  +F     +D 
Sbjct: 532 CTNLSVFKHGKEIHCVLVRRLLSGH---PFLSNSLLDLYTKGGMLVTASKIFNKITKKDV 588

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
           ASWN MI GY  HG  + A E F +M  +G   D ++++ VL+ACSH GL+++GKK+FS 
Sbjct: 589 ASWNTMILGYGMHGQIDIAFELFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQ 648

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +     I P   H+ACM+D+LGRAG+ ++    I +     N+ VW  LLGAC  HGNIE
Sbjct: 649 MVA-QNIEPQQMHYACMVDLLGRAGQLSKCAEIIRDMPFPANSDVWGALLGACRIHGNIE 707

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           L +  AE L EL+P+    Y    ++ A  GRWN+ + +R L+ S+ ++K P+ SW++
Sbjct: 708 LAQWAAEHLFELKPEHSGYYTLMINMYAETGRWNEANKIRKLMKSRKVQKNPAYSWVQ 765



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 140/476 (29%), Positives = 244/476 (51%), Gaps = 11/476 (2%)

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
           G  +HA A+R G   D F   +LV  Y+ CG A +A +VF  + + DVV+W ++++    
Sbjct: 138 GLELHASALRRGHLADVFTGNTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFLV 197

Query: 130 QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
            G   +A +    M  S    N   L S+V A     +++ G SIHA+  K G  +   +
Sbjct: 198 NGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNL 257

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
            NALV MY + G V    +VF+ +  Q+ VSWN+    F +       LR+F +M     
Sbjct: 258 ANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNV 317

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
            P   T   +L A   L     G+++H ++IK ++D +  V  SLVDMY K G LE A  
Sbjct: 318 MPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKAST 377

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369
            F+ + ++++ ++ A+I +  Q G    A +    M+  G   N  TL + L  C+ +A+
Sbjct: 378 IFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMAS 437

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           L  G+ +H+ +++ G + D+F+S AL+ MY+KCG +  A  +F+ S  +D  S+N +I G
Sbjct: 438 LKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFERSE-KDDVSYNTLILG 496

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGIT 488
           Y +     ++L  F+ M   G   D ++F+  LSAC+++ + + GK+ H   ++++    
Sbjct: 497 YSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGH 556

Query: 489 PTIKHFACMIDILGRAGKF---TEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
           P + +   ++D+  + G     ++I N IT+  +      W  ++     HG I++
Sbjct: 557 PFLSN--SLLDLYTKGGMLVTASKIFNKITKKDVAS----WNTMILGYGMHGQIDI 606



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/435 (27%), Positives = 209/435 (48%), Gaps = 2/435 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E + +VF  M E N VSWN+ +  +  +G    V+ +F  M +        +LS++L  
Sbjct: 271 VEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPA 330

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
               G    G+ VH  +I+    LD F++ SLVDMY+K G  + A  +F ++KD +VV+W
Sbjct: 331 LVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSW 390

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I  L Q G   EA ++   M++S   PN   L +++ A       + G+ IHA   +
Sbjct: 391 NAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIR 450

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G   D  + NAL+ MY + G++S    +FE  + +D VS+N L   +       + L +
Sbjct: 451 RGLMFDLFISNALIDMYSKCGQLSLARNIFER-SEKDDVSYNTLILGYSQSPWCFESLLL 509

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QM   G   +  +F+  L AC++LS    GK++H   ++  L G+  +  SL+D+Y K
Sbjct: 510 FKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPFLSNSLLDLYTK 569

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L  A   F+ +  KD+ ++  +I  Y   G+ ++A + F  M+ +G+  +  +  + 
Sbjct: 570 GGMLVTASKIFNKITKKDVASWNTMILGYGMHGQIDIAFELFELMKGDGLDYDHVSYIAV 629

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD-AEAVFKGSALRD 419
           L  CS    +  G+   S  V             +V +  + G +   AE +       +
Sbjct: 630 LAACSHGGLVDKGKKYFSQMVAQNIEPQQMHYACMVDLLGRAGQLSKCAEIIRDMPFPAN 689

Query: 420 TASWNMMIGGYVKHG 434
           +  W  ++G    HG
Sbjct: 690 SDVWGALLGACRIHG 704



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 118/390 (30%), Positives = 192/390 (49%), Gaps = 11/390 (2%)

Query: 135 EAAKIFNLMRESSVKPNQ--FVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
           EA +++NLM  S+V+P+   F       A      +  G  +HA   + G  +D   GN 
Sbjct: 100 EALRVYNLMLRSAVRPDDRTFPFALHAAAAAVASAEDKGLELHASALRRGHLADVFTGNT 159

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           LV+ Y   G+     RVF+ +  +D VSWN+L S F          R    M+  GF  N
Sbjct: 160 LVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLN 219

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
           + + + ++ AC +  +  FG  +HA  +K  L+    +  +LVDMY K G +E +   FD
Sbjct: 220 VASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFD 279

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
            +  ++  ++ + I  +  AG     L+ FRKM    +     TL+S L     + +   
Sbjct: 280 GMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDL 339

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
           GR +H  ++K    LD+FV+ +LV MYAK GS++ A  +F+    R+  SWN MI   V+
Sbjct: 340 GREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQ 399

Query: 433 HGLGEKALEAFRMMLD---EGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGIT 488
           +G      EAFR++ D    G  P+ IT V VL AC+ M  ++ GK+ H  SI++  G+ 
Sbjct: 400 NG---AETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIRR--GLM 454

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETK 518
             +     +ID+  + G+ +   N    ++
Sbjct: 455 FDLFISNALIDMYSKCGQLSLARNIFERSE 484



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 139/322 (43%), Gaps = 10/322 (3%)

Query: 221 WNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTF----IVILKACSSLSDVGFGKQLH 276
           WN+L         P + LR++  ML    +P+  TF         A +S  D G   +LH
Sbjct: 85  WNSLSRALSSASLPSEALRVYNLMLRSAVRPDDRTFPFALHAAAAAVASAEDKGL--ELH 142

Query: 277 AHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAE 336
           A  ++     +   G +LV  Y   G   DA   FD +  +D+ ++ ++++++   G   
Sbjct: 143 ASALRRGHLADVFTGNTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFLVNGMFH 202

Query: 337 MALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALV 396
            A +    M   G   N  +L S +  C        G  +H++AVK G    + ++ ALV
Sbjct: 203 DARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALV 262

Query: 397 AMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI 456
            MY K G ++ +  VF G   ++  SWN  IG ++  G     L  FR M +   +P  I
Sbjct: 263 DMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSI 322

Query: 457 TFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFIT 515
           T   +L A   +G  + G++ H  SIK+   +   + +   ++D+  + G   +      
Sbjct: 323 TLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVAN--SLVDMYAKFGSLEKASTIFE 380

Query: 516 ETKLTPNALVWENLLGACSWHG 537
           + K   N + W  ++     +G
Sbjct: 381 QMK-DRNVVSWNAMIANLVQNG 401


>gi|225470674|ref|XP_002269391.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 587

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 184/550 (33%), Positives = 320/550 (58%), Gaps = 4/550 (0%)

Query: 53  SLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI 112
           +LS++L   + +  ++ G  +HA  ++ G   D F+S  +++MY+KCG    A +VF  +
Sbjct: 5   TLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEM 64

Query: 113 KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172
            + ++V+W A+I+  DQ G  Q A  +++ M    + PN++V  S++ A         G+
Sbjct: 65  FEKNLVSWSAMISGYDQAGEPQMAIDLYSQM---FLVPNEYVFASVISACASLSAVTLGQ 121

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
            IH+   K+G+ES + V N+L+SMYM+  + S    VF      + VS+NAL + F + +
Sbjct: 122 KIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFVENQ 181

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
             ++GL  F  M  +G  P+   F+ +L  C++  ++  G +LH  T+K +LD    +G 
Sbjct: 182 QLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTPFIGN 241

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE-GIK 351
            ++ MY +   +++A  AF  +  KD+ ++  +I + +   +    L+ F+ M  E  ++
Sbjct: 242 VIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTEETNVR 301

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            ++FT  S L  C+ +A++++G+ +H+  ++T    D+ V  ALV MYAKCG I  A  +
Sbjct: 302 PDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLGVGNALVNMYAKCGCIGYAYDI 361

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F      +  SWN +I G+  HGLGE+A+E F  M   G  PD +TF+ +L+AC+H GL+
Sbjct: 362 FSKMVHHNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGLLTACNHAGLV 421

Query: 472 EEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLG 531
           ++G+ +F+S+++ YGI P I+HF+C+ID+LGRAG+  E E ++ +     + +V  +LL 
Sbjct: 422 DKGQLYFNSMEETYGIAPDIEHFSCLIDMLGRAGRLNEAEEYMRKFPFWNDPVVLVSLLS 481

Query: 532 ACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
           A   HG++ + E+ A+ LL+L+P   S YV  S++ A+ G W+  +  R  L   G+KKE
Sbjct: 482 ASRLHGDVVIGERLAKWLLKLQPVTTSPYVLLSNLYASDGMWDSVAEARKRLKGSGLKKE 541

Query: 592 PSCSWIEVDG 601
           P  S IEV+G
Sbjct: 542 PGHSLIEVNG 551



 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 119/424 (28%), Positives = 215/424 (50%), Gaps = 10/424 (2%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
            A++VF  M E N+VSW+A+++GY ++G+ Q  + L+  M  +    +++  ++V+   A
Sbjct: 56  FARQVFDEMFEKNLVSWSAMISGYDQAGEPQMAIDLYSQMFLVP---NEYVFASVISACA 112

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           +   +  GQ +H+ +++ G     F+S SL+ MY KC    +AL VF    +P+ V++ A
Sbjct: 113 SLSAVTLGQKIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNA 172

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +IT   +    +   + F LMR+  + P++F    ++   T T + + G  +H    K  
Sbjct: 173 LITGFVENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLN 232

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            +S   +GN +++MY E   +    + F  I  +D +SWN L +     +   +GLR+F 
Sbjct: 233 LDSTPFIGNVIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSHCDDHAKGLRVFK 292

Query: 243 QMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            M  +   +P+  TF   L AC+ L+ +  GKQ+HAH ++  L  +  VG +LV+MY K 
Sbjct: 293 HMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLGVGNALVNMYAKC 352

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           GC+  A   F  + + +L ++  II  +   G  E A++ F +M   GI+ +  T    L
Sbjct: 353 GCIGYAYDIFSKMVHHNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGLL 412

Query: 362 NGCSPVATLANGRL-LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
             C+    +  G+L  +S+    G   D+   + L+ M  + G +++AE       +R  
Sbjct: 413 TACNHAGLVDKGQLYFNSMEETYGIAPDIEHFSCLIDMLGRAGRLNEAE-----EYMRKF 467

Query: 421 ASWN 424
             WN
Sbjct: 468 PFWN 471


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 184/550 (33%), Positives = 305/550 (55%), Gaps = 1/550 (0%)

Query: 50  SKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF 109
           SK  + T++K           + +HA  IR   +L    +  ++ +Y+   L   AL VF
Sbjct: 4   SKALIKTLIKNPTRIKSKSQAKQLHAQFIRTQ-SLSHTSASIVISIYTNLKLLHEALLVF 62

Query: 110 YRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
             ++ P V+AW ++I C   Q     A   F  MR S   P+  V  S++++ T   D R
Sbjct: 63  KTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLR 122

Query: 170 CGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
            GES+H  I + G + D   GNAL++MY +   +    +VFE +  +D VS+N + + + 
Sbjct: 123 FGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYA 182

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
                +  LR+  +M     KP+  T   +L   S   DV  GK++H + I+  +D +  
Sbjct: 183 QSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVY 242

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           +G+SLVDMY KS  +ED+   F  L  +D  ++ +++  Y Q G    AL+ FR+M    
Sbjct: 243 IGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAK 302

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           ++      +S +  C+ +ATL  G+ LH   ++ G   ++F+++ALV MY+KCG+I  A 
Sbjct: 303 VRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAAR 362

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
            +F    L D  SW  +I G+  HG G +A+  F  M  +G  P+++ FV VL+ACSH+G
Sbjct: 363 KIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVG 422

Query: 470 LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENL 529
           L++E   +F+S+ K+YG+   ++H+A + D+LGRAGK  E  +FI++ ++ P   VW  L
Sbjct: 423 LVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTL 482

Query: 530 LGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589
           L +CS H N+EL EK AEK+  ++ +    YV   ++ A+ GRW + + +R  +  +G++
Sbjct: 483 LSSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLR 542

Query: 590 KEPSCSWIEV 599
           K+P+CSWIE+
Sbjct: 543 KKPACSWIEM 552



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 171/366 (46%), Gaps = 43/366 (11%)

Query: 5   KRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANS 64
           ++VF+ MP  +VVS+N ++ GYA+SG  +  + +   M   + K   F+LS+VL  F+  
Sbjct: 160 RKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEY 219

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
             +  G+ +H   IR G   D ++  SLVDMY+K    +++ +VF  +   D ++W +++
Sbjct: 220 VDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLV 279

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
               Q G   EA ++F  M  + V+P     +S++ A         G+ +H  + + GF 
Sbjct: 280 AGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFG 339

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
            +  + +ALV MY + G +    ++F+ +   D VSW A+      +    + + +F +M
Sbjct: 340 RNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEM 399

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
             +G KPN   F+ +L ACS                       HV            G +
Sbjct: 400 KRQGVKPNQVAFVAVLTACS-----------------------HV------------GLV 424

Query: 305 EDAGVAFDSLA-----NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           ++A   F+S+      N++L  Y A+     +AG+ E A     KMR+E   S   TL  
Sbjct: 425 DEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTL-- 482

Query: 360 CLNGCS 365
            L+ CS
Sbjct: 483 -LSSCS 487


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 194/578 (33%), Positives = 311/578 (53%)

Query: 22  LLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLG 81
           +L GYA+S      +  F  MK    +   ++ + +LK   ++  +K G+ +H   I  G
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 82  CALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFN 141
            + + F    +V+MY+KC   ++A  +F R+ + D+V W  +I+   Q G  + A  +  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 142 LMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENG 201
            M E   +P+   + S++ A  +T   R G ++H  + + GFES   V  ALV MY + G
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCG 180

Query: 202 RVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILK 261
            VS    +F+ + H+  VSWN++   +      +  + IF +ML +G +P   T +  L 
Sbjct: 181 SVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALH 240

Query: 262 ACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFA 321
           AC+ L D+  GK +H    +  LD +  V  SL+ MY K   ++ A   F +L NK L +
Sbjct: 241 ACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVS 300

Query: 322 YTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAV 381
           + A+I  YAQ G    AL  F +M+   IK + FT+ S +   + ++     + +H + +
Sbjct: 301 WNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVI 360

Query: 382 KTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALE 441
           +     ++FV TALV MYAKCG+I  A  +F     R   +WN MI GY  HGLG+ ++E
Sbjct: 361 RRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVE 420

Query: 442 AFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDIL 501
            F+ M      P++ITF+  LSACSH GL+EEG   F S+KK YGI PT+ H+  M+D+L
Sbjct: 421 LFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLL 480

Query: 502 GRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYV 561
           GRAG+  +  +FI +  + P   V+  +LGAC  H N++L EK A ++ +L P     +V
Sbjct: 481 GRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHV 540

Query: 562 FPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
             ++I AT   W   + VR ++   G++K P CS +E+
Sbjct: 541 LLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEI 578



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 126/453 (27%), Positives = 220/453 (48%), Gaps = 6/453 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A  +F  MPE ++V WN +++GYA++G  +  + L   M +   +    ++ ++L   A+
Sbjct: 84  AYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVAD 143

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +  ++ G  VH   +R G      +S +LVDMYSKCG    A  +F  +    VV+W ++
Sbjct: 144 TRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSM 203

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q G  + A  IF  M +  V+P    +   + A  + GD   G+ +H ++ +   
Sbjct: 204 IDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKL 263

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           +SD  V N+L+SMY +  RV   + +F+ + ++  VSWNA+   +      ++ L  F +
Sbjct: 264 DSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCE 323

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +  KP+  T + ++ A + LS     K +H   I+  LD N  V T+LVDMY K G 
Sbjct: 324 MQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGA 383

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +  A   FD +  + +  + A+I  Y   G  + +++ F++M+   IK N+ T    L+ 
Sbjct: 384 IHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSA 443

Query: 364 CSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
           CS    +  G     S+    G    M    A+V +  + G ++ A    +   ++   +
Sbjct: 444 CSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGIT 503

Query: 423 -WNMMIGGYVKH---GLGEK-ALEAFRMMLDEG 450
            +  M+G    H    LGEK A E F++  D+G
Sbjct: 504 VYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDG 536



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 136/264 (51%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + +A+ +F  M    VVSWN++++GY +SGD +  M +F  M D   + +  ++   L  
Sbjct: 182 VSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHA 241

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+ G ++ G+ VH +  +L    D  +  SL+ MYSKC   D A  +F  +++  +V+W
Sbjct: 242 CADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSW 301

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    Q GC  EA   F  M+  ++KP+ F + S++ A  E    R  + IH ++ +
Sbjct: 302 NAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIR 361

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              + +  V  ALV MY + G +    ++F+ +  +  ++WNA+   +  +      + +
Sbjct: 362 RFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVEL 421

Query: 241 FYQMLLKGFKPNMCTFIVILKACS 264
           F +M     KPN  TF+  L ACS
Sbjct: 422 FKEMKKGTIKPNDITFLCALSACS 445



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 140/299 (46%), Gaps = 5/299 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +++A  +FK++    +VSWNA++ GYA++G   + ++ FC M+    K   F++ +V+  
Sbjct: 283 VDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPA 342

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A     +  + +H + IR     + F+  +LVDMY+KCG    A K+F  +    V+ W
Sbjct: 343 LAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITW 402

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I      G  + + ++F  M++ ++KPN       + A + +G    G      + K
Sbjct: 403 NAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKK 462

Query: 181 -YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS-WNALFSRFQDYESPDQGL 238
            YG E       A+V +    GR++      + +  +  ++ + A+    + +++ D G 
Sbjct: 463 DYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGE 522

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           +  +++      P+   + V+L    + + + +GK     TI          G SLV++
Sbjct: 523 KAAFEIF--KLNPDDGGYHVLLANIYATASM-WGKVAKVRTIMEKSGLQKTPGCSLVEI 578


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  355 bits (910), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 191/601 (31%), Positives = 324/601 (53%), Gaps = 7/601 (1%)

Query: 4   AKRVFKSMPE-LNVVSWNALLNGYAESG---DGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           AK VF+++   L++  WN L+    ++    +G +V H       +  K   F+  +VLK
Sbjct: 249 AKLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYL--KPDAFTYPSVLK 306

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             +  G +  G++VH   I+ G A+D  +  S V MY+KC + ++A+K+F  + + DV +
Sbjct: 307 ACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVAS 366

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  +I+C  Q G  ++A ++F  M+ S  KP+   LT+++ +     D   G+ IH  + 
Sbjct: 367 WNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELV 426

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           + GF  D  V +ALV MY + G +     VFE I  ++ VSWN++ + +         + 
Sbjct: 427 RSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIE 486

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F +M  +G +P + T   IL ACS   ++  GK +H + I++ ++ +  V +SL+D+Y 
Sbjct: 487 LFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYF 546

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G +  A   F ++   ++ ++  +I+ Y + G    AL  F  MR  G+K +  T  S
Sbjct: 547 KCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTS 606

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L  CS +A L  G+ +H+  +++   ++  V  AL+ MYAKCG++D+A  +F     RD
Sbjct: 607 VLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERD 666

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SW  MI  Y  HG   +AL+ F  M      PD++TF+ +LSACSH GL++EG  +F+
Sbjct: 667 FVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFN 726

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK-LTPNALVWENLLGACSWHGN 538
            +   YG  P ++H++C+ID+LGR G+  E    +  T  +  +  +   L  AC  H  
Sbjct: 727 QMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKK 786

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           ++L E+    L+E +P   S Y+  S++ A+  +W++   VR  +   G+KK P CSWIE
Sbjct: 787 LDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIE 846

Query: 599 V 599
           V
Sbjct: 847 V 847



 Score =  244 bits (624), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 146/501 (29%), Positives = 259/501 (51%), Gaps = 13/501 (2%)

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP-DVVAWGAIITCLD 128
           G+++H   + LG   +  L  SL+++Y  C L  +A  VF  I++P D+  W  ++    
Sbjct: 214 GKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACT 273

Query: 129 QQGCCQEAAKIFN-LMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDT 187
           +     E  ++F+ L+    +KP+ F   S+++A +  G    G+ +H  + K GF  D 
Sbjct: 274 KNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDV 333

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK 247
           +V ++ V MY +        ++F+ +  +D  SWN + S +     P++ L +F +M + 
Sbjct: 334 VVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVS 393

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           GFKP+  T   ++ +C+ L D+  GK++H   ++     +  V ++LVDMY K GCLE A
Sbjct: 394 GFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMA 453

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367
              F+ +  K++ ++ ++I  Y+  G+++  ++ FR+M  EGI+    TL+S L  CS  
Sbjct: 454 KEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRS 513

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
             L  G+ +H   ++     D+FV+++L+ +Y KCG+I  AE VF+     +  SWN+MI
Sbjct: 514 VNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMI 573

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYG 486
            GYVK G   +AL  F  M   G  PD ITF  VL ACS + ++E+GK+ H   I+    
Sbjct: 574 SGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLE 633

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDA 546
           I   +     ++D+  + G   E  +   +     + + W +++ A   HG        A
Sbjct: 634 INEVV--MGALLDMYAKCGAVDEALHIFNQLP-ERDFVSWTSMIAAYGSHGQ-------A 683

Query: 547 EKLLELEPKMESNYVFPSDIS 567
            + L+L  KM+ +   P  ++
Sbjct: 684 FEALKLFEKMQQSDAKPDKVT 704



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 122/372 (32%), Positives = 204/372 (54%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E A ++F  MPE +V SWN +++ Y + G  +K + LF  MK    K    +L+TV+   
Sbjct: 350 EDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSC 409

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           A    ++ G+ +H   +R G ALD F+S +LVDMY KCG  + A +VF +I+  +VV+W 
Sbjct: 410 ARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWN 469

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           ++I     +G  +   ++F  M E  ++P    L+S++ A + + + + G+ IH  I + 
Sbjct: 470 SMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRN 529

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
             E+D  V ++L+ +Y + G +     VF+ +   + VSWN + S +    S  + L IF
Sbjct: 530 RVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIF 589

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
             M   G KP+  TF  +L ACS L+ +  GK++H   I+  L+ N VV  +L+DMY K 
Sbjct: 590 TDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKC 649

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G +++A   F+ L  +D  ++T++I +Y   G+A  ALK F KM+    K ++ T  + L
Sbjct: 650 GAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAIL 709

Query: 362 NGCSPVATLANG 373
           + CS    +  G
Sbjct: 710 SACSHAGLVDEG 721



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 118/376 (31%), Positives = 189/376 (50%), Gaps = 5/376 (1%)

Query: 158 LVRATTETG-DQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ 216
           L R T  +  ++  G+ IH  I   G +++  +  +L+++Y           VF+ I + 
Sbjct: 200 LARVTAGSALEELLGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENP 259

Query: 217 -DSVSWNALFSRFQDYESPDQGLRIFYQML-LKGFKPNMCTFIVILKACSSLSDVGFGKQ 274
            D   WN L +         +GL +F+++L     KP+  T+  +LKACS L  VG+GK 
Sbjct: 260 LDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKM 319

Query: 275 LHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGE 334
           +H H IK     + VV +S V MY K    EDA   FD +  +D+ ++  +I+ Y Q G+
Sbjct: 320 VHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQ 379

Query: 335 AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA 394
            E AL+ F +M++ G K +  TL + ++ C+ +  L  G+ +H   V++G  LD FVS+A
Sbjct: 380 PEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSA 439

Query: 395 LVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD 454
           LV MY KCG ++ A+ VF+    ++  SWN MI GY   G  +  +E FR M +EG  P 
Sbjct: 440 LVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPT 499

Query: 455 EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFI 514
             T   +L ACS    ++ GK     I +   +   I   + +ID+  + G     EN  
Sbjct: 500 LTTLSSILMACSRSVNLQLGKFIHGYIIR-NRVEADIFVNSSLIDLYFKCGNIGSAENVF 558

Query: 515 TETKLTPNALVWENLL 530
                T N + W  ++
Sbjct: 559 QNMPKT-NVVSWNVMI 573



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 164/312 (52%), Gaps = 9/312 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E+AK VF+ +   NVVSWN+++ GY+  GD +  + LF  M +   + +  +LS++L  
Sbjct: 450 LEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMA 509

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            + S  ++ G+ +H   IR     D F++ SL+D+Y KCG   +A  VF  +   +VV+W
Sbjct: 510 CSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSW 569

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+   + G   EA  IF  MR++ VKP+    TS++ A ++      G+ IH  I +
Sbjct: 570 NVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIE 629

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              E + +V  AL+ MY + G V     +F  +  +D VSW ++ + +  +    + L++
Sbjct: 630 SKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKL 689

Query: 241 FYQMLLKGFKPNMCTFIVILKACS--SLSDVG---FGKQLHAHTIKHSLDGNHVVGTSLV 295
           F +M     KP+  TF+ IL ACS   L D G   F + +  +  K +++      + L+
Sbjct: 690 FEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHY----SCLI 745

Query: 296 DMYDKSGCLEDA 307
           D+  + G L +A
Sbjct: 746 DLLGRVGRLREA 757


>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
          Length = 708

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 191/573 (33%), Positives = 320/573 (55%), Gaps = 6/573 (1%)

Query: 28  ESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKF 87
           +SG+    + L  S+   E        +++L+          G  +HA  I+ G   D+F
Sbjct: 95  KSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRF 154

Query: 88  LSCSLVDMYSKCGLA-DNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRES 146
           +  SL+ +Y K G       KVF  +   DV++W ++I+   + G    + ++F  M   
Sbjct: 155 VGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAY 214

Query: 147 SVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYG 206
            V+PN F L+++++A +E GD + G   H V+   GF+S+ ++ +AL+ M+  N  +   
Sbjct: 215 GVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDA 274

Query: 207 SRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK-GFKPNMCTFIVILKACSS 265
            ++F+ +   D++ W ++ S     +  D+ LR FY M    G  P+  TF  +L AC +
Sbjct: 275 RQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGN 334

Query: 266 LSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
           L  +  GK++HA  I     GN VV +SLVDMY K G + ++   FD +  K+  +++A+
Sbjct: 335 LGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSAL 394

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH 385
           +  Y Q G+ +  ++ FRKM     K + +   + L  C+ +A +  G+ +H   ++ G 
Sbjct: 395 LGGYCQNGDFKSVIQIFRKME----KVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGG 450

Query: 386 LLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRM 445
             D+ V +ALV +YAKCG I+ A+ +F    +R+  +WN MIGG+ ++G GE+AL  F  
Sbjct: 451 WRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQ 510

Query: 446 MLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAG 505
           M+ EG  PD I+F+ +L ACSH GL++EG+++F S+ K YGI   I+H++CM+D+LGRAG
Sbjct: 511 MVKEGIKPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAG 570

Query: 506 KFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSD 565
              E E  I  +    ++ +W  LLGAC+   N E+ E+ A++++ELEP    +YV  ++
Sbjct: 571 LLEEAEILIETSDFRDDSSLWAALLGACTTCTNYEIAERIAKRVMELEPDYHLSYVLLAN 630

Query: 566 ISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           +    GRWND   +R L+  +G+ K P  SWIE
Sbjct: 631 VYKAVGRWNDALRIRRLMKDRGVNKMPGKSWIE 663



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 118/428 (27%), Positives = 223/428 (52%), Gaps = 7/428 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
            ++VF  +   +V+SW ++++GY   G     + LF  M     + + F+LS V+K  + 
Sbjct: 173 TRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSE 232

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G +K G++ H + +  G   +  ++ +L+DM+ +    D+A ++F  + +PD + W +I
Sbjct: 233 LGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSI 292

Query: 124 ITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I+ L +     EA + F ++ R+  + P+ F   +++ A    G  + G+ +HA +   G
Sbjct: 293 ISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTG 352

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F  + +V ++LV MY + G V    R+F+ +  ++SVSW+AL   +         ++IF 
Sbjct: 353 FCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFR 412

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M     K ++  F  IL+ C+ L+ V  GK++H   I+     + +V ++LVD+Y K G
Sbjct: 413 KME----KVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCG 468

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
           C+E A   FD +  ++L  + ++I  +AQ G  E AL+ F +M  EGIK +  +    L 
Sbjct: 469 CIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILF 528

Query: 363 GCSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
            CS    +  GR    S+    G  + +   + +V +  + G +++AE + + S  RD +
Sbjct: 529 ACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDDS 588

Query: 422 S-WNMMIG 428
           S W  ++G
Sbjct: 589 SLWAALLG 596



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 3/210 (1%)

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH 385
           I    ++GE   AL+  + +    I +     AS L  C+ V    +G  +H+  +K+G 
Sbjct: 90  ILQLCKSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGL 149

Query: 386 LLDMFVSTALVAMYAKCGS-IDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
             D FV  +L+ +Y K G+   +   VF G  ++D  SW  MI GYV+ G    +LE F 
Sbjct: 150 EFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFW 209

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA 504
            ML  G  P+  T   V+ ACS +G ++ G+  F  +    G        + +ID+ GR 
Sbjct: 210 KMLAYGVEPNAFTLSAVIKACSELGDLKLGRI-FHGVVLGRGFDSNYVIASALIDMHGRN 268

Query: 505 GKFTEIENFITETKLTPNALVWENLLGACS 534
               +      E  L P+A+ W +++ A +
Sbjct: 269 CALDDARQLFDEL-LEPDAICWTSIISALT 297



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 73/153 (47%), Gaps = 16/153 (10%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ +F  MP  N+++WN+++ G+A++G G++ + +F  M     K    S   +L  
Sbjct: 470 IEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFA 529

Query: 61  FANSGYIKAGQ-----VVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD- 114
            ++ G +  G+     +     I++G    +  SC +VD+  + GL + A ++     D 
Sbjct: 530 CSHRGLVDEGREYFISMTKDYGIKVGI---EHYSC-MVDLLGRAGLLEEA-EILIETSDF 584

Query: 115 -PDVVAW----GAIITCLDQQGCCQEAAKIFNL 142
             D   W    GA  TC + +   + A ++  L
Sbjct: 585 RDDSSLWAALLGACTTCTNYEIAERIAKRVMEL 617


>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Vitis vinifera]
          Length = 633

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 185/531 (34%), Positives = 306/531 (57%), Gaps = 6/531 (1%)

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLA-DNALKVFYRIKDPDVVAWGAIITCLD 128
           G  +HA  I+ G   D+F+  SL+ +Y K G       KVF  +   DV++W ++I+   
Sbjct: 78  GLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYV 137

Query: 129 QQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTL 188
           + G    + ++F  M    V+PN F L+++++A +E GD + G   H V+   GF+S+ +
Sbjct: 138 RVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYV 197

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK- 247
           + +AL+ M+  N  +    ++F+ +   D++ W ++ S     +  D+ LR FY M    
Sbjct: 198 IASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDH 257

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           G  P+  TF  +L AC +L  +  GK++HA  I     GN VV +SLVDMY K G + ++
Sbjct: 258 GMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGES 317

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367
              FD +  K+  +++A++  Y Q G+ +  ++ FRKM     K + +   + L  C+ +
Sbjct: 318 QRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKME----KVDLYCFGTILRTCAGL 373

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
           A +  G+ +H   ++ G   D+ V +ALV +YAKCG I+ A+ +F    +R+  +WN MI
Sbjct: 374 AAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMI 433

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGI 487
           GG+ ++G GE+AL  F  M+ EG  PD I+F+ +L ACSH GL++EG+++F S+ K YGI
Sbjct: 434 GGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEGREYFISMTKDYGI 493

Query: 488 TPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAE 547
              I+H++CM+D+LGRAG   E E  I  +    ++ +W  LLGAC+   N E+ E+ A+
Sbjct: 494 KVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAALLGACTTCTNYEIAERIAK 553

Query: 548 KLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           +++ELEP    +YV  +++    GRWND   +R L+  +G+ K P  SWIE
Sbjct: 554 RVMELEPDYHLSYVLLANVYKAVGRWNDALRIRRLMKDRGVNKMPGKSWIE 604



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 118/428 (27%), Positives = 223/428 (52%), Gaps = 7/428 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
            ++VF  +   +V+SW ++++GY   G     + LF  M     + + F+LS V+K  + 
Sbjct: 114 TRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSE 173

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G +K G++ H + +  G   +  ++ +L+DM+ +    D+A ++F  + +PD + W +I
Sbjct: 174 LGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSI 233

Query: 124 ITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I+ L +     EA + F ++ R+  + P+ F   +++ A    G  + G+ +HA +   G
Sbjct: 234 ISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTG 293

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F  + +V ++LV MY + G V    R+F+ +  ++SVSW+AL   +         ++IF 
Sbjct: 294 FCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFR 353

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M     K ++  F  IL+ C+ L+ V  GK++H   I+     + +V ++LVD+Y K G
Sbjct: 354 KME----KVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCG 409

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
           C+E A   FD +  ++L  + ++I  +AQ G  E AL+ F +M  EGIK +  +    L 
Sbjct: 410 CIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILF 469

Query: 363 GCSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
            CS    +  GR    S+    G  + +   + +V +  + G +++AE + + S  RD +
Sbjct: 470 ACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDDS 529

Query: 422 S-WNMMIG 428
           S W  ++G
Sbjct: 530 SLWAALLG 537



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 119/426 (27%), Positives = 215/426 (50%), Gaps = 19/426 (4%)

Query: 145 ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVS 204
           E S KP   +  SL++  T+      G  IHA + K G E D  VGN+L+++Y + G   
Sbjct: 54  EISAKP--VLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDF 111

Query: 205 YGSR-VFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKAC 263
             +R VF+ +  +D +SW ++ S +     P   L +F++ML  G +PN  T   ++KAC
Sbjct: 112 PETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKAC 171

Query: 264 SSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYT 323
           S L D+  G+  H   +    D N+V+ ++L+DM+ ++  L+DA   FD L   D   +T
Sbjct: 172 SELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWT 231

Query: 324 AIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVK 382
           +II++  +    + AL+ F  M R  G+  + FT  + L  C  +  L  G+ +H+  + 
Sbjct: 232 SIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVIT 291

Query: 383 TGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEA 442
           TG   ++ V ++LV MY KCGS+ +++ +F    ++++ SW+ ++GGY ++G  +  ++ 
Sbjct: 292 TGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQI 351

Query: 443 FRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDIL 501
           FR M       D   F  +L  C+ +  + +GK+ H   I+K  G    +   + ++D+ 
Sbjct: 352 FRKMEK----VDLYCFGTILRTCAGLAAVRQGKEVHCQYIRK--GGWRDVIVESALVDLY 405

Query: 502 GRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYV 561
            + G   E    I +     N + W +++G  + +G         E+ L +  +M    +
Sbjct: 406 AKCG-CIEYAQTIFDQMPVRNLITWNSMIGGFAQNGR-------GEEALRIFNQMVKEGI 457

Query: 562 FPSDIS 567
            P  IS
Sbjct: 458 KPDYIS 463



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 175/366 (47%), Gaps = 29/366 (7%)

Query: 245 LLKGFKPNMCT-----FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           LLK   P   +     +  +L+ C+ +     G Q+HAH IK  L+ +  VG SL+ +Y 
Sbjct: 46  LLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYF 105

Query: 300 KSGC-LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
           K G    +    FD L  KD+ ++T++I+ Y + G+   +L+ F KM   G++ N FTL+
Sbjct: 106 KLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLS 165

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           + +  CS +  L  GR+ H + +  G   +  +++AL+ M+ +  ++DDA  +F      
Sbjct: 166 AVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEP 225

Query: 419 DTASWNMMIGGYVKHGLGEKALEAF-RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           D   W  +I    ++   ++AL  F  M  D G  PD  TF  VL+AC ++G +++GK+ 
Sbjct: 226 DAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEV 285

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
            + +    G    +   + ++D+ G+ G   E +       +  N++ W  LLG    +G
Sbjct: 286 HAKVITT-GFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIK-NSVSWSALLGGYCQNG 343

Query: 538 NIELDEKDAEKLLELEPKMESN--YVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCS 595
                  D + ++++  KME    Y F + +    G     + VR     QG  KE  C 
Sbjct: 344 -------DFKSVIQIFRKMEKVDLYCFGTILRTCAG----LAAVR-----QG--KEVHCQ 385

Query: 596 WIEVDG 601
           +I   G
Sbjct: 386 YIRKGG 391



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 3/210 (1%)

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH 385
           I    ++GE   AL+  + +    I +     AS L  C+ V    +G  +H+  +K+G 
Sbjct: 31  ILQLCKSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGL 90

Query: 386 LLDMFVSTALVAMYAKCGS-IDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
             D FV  +L+ +Y K G+   +   VF G  ++D  SW  MI GYV+ G    +LE F 
Sbjct: 91  EFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFW 150

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA 504
            ML  G  P+  T   V+ ACS +G ++ G+  F  +    G        + +ID+ GR 
Sbjct: 151 KMLAYGVEPNAFTLSAVIKACSELGDLKLGRI-FHGVVLGRGFDSNYVIASALIDMHGRN 209

Query: 505 GKFTEIENFITETKLTPNALVWENLLGACS 534
               +      E  L P+A+ W +++ A +
Sbjct: 210 CALDDARQLFDEL-LEPDAICWTSIISALT 238



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 73/153 (47%), Gaps = 16/153 (10%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ +F  MP  N+++WN+++ G+A++G G++ + +F  M     K    S   +L  
Sbjct: 411 IEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFA 470

Query: 61  FANSGYIKAGQ-----VVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD- 114
            ++ G +  G+     +     I++G    +  SC +VD+  + GL + A ++     D 
Sbjct: 471 CSHRGLVDEGREYFISMTKDYGIKVGI---EHYSC-MVDLLGRAGLLEEA-EILIETSDF 525

Query: 115 -PDVVAW----GAIITCLDQQGCCQEAAKIFNL 142
             D   W    GA  TC + +   + A ++  L
Sbjct: 526 RDDSSLWAALLGACTTCTNYEIAERIAKRVMEL 558


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 193/597 (32%), Positives = 325/597 (54%), Gaps = 2/597 (0%)

Query: 4   AKRVFKSM-PELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           A RVF+ +  +LNV+ ++ +L G+A+  D  K +  F  M+  + +   ++ + +LK   
Sbjct: 88  AARVFEPIDSKLNVL-YHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCG 146

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           +   ++ G+ +H + ++ G +LD F    L +MY+KC   + A KVF R+ + D+V+W  
Sbjct: 147 DEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNT 206

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I+    Q G  + A ++   M E ++KP+   + S++ A +       G+ IH    + G
Sbjct: 207 IVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSG 266

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F+S   +  ALV MY + G +    ++F+ +  ++ VSWN++   +   E+P + + IF 
Sbjct: 267 FDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQ 326

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +ML +G KP   + +  L AC+ L D+  G+ +H  +++  LD N  V  SL+ MY K  
Sbjct: 327 KMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCK 386

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            ++ A   F  L ++ L ++ A+I  +AQ G    AL  F +MR   +K + FT  S + 
Sbjct: 387 EVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVIT 446

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
             + ++   + + +H + +++    ++FV+TALV MYAKCG+I  A  +F   + R   +
Sbjct: 447 AIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTT 506

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN MI GY  HG G+ ALE F  M      P+ +TF+ V+SACSH GL+E G K F  +K
Sbjct: 507 WNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMK 566

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           + Y I  ++ H+  M+D+LGRAG+  E  +FI +  + P   V+  +LGAC  H N+   
Sbjct: 567 ENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFA 626

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           EK AE+L EL P     +V  ++I      W     VR  +  QG++K P CS +E+
Sbjct: 627 EKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEI 683



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 111/409 (27%), Positives = 201/409 (49%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +K  + +  +  + G   + F    LV ++ + G  D A +VF  I     V +  ++  
Sbjct: 50  LKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKG 109

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             +     +A + F  MR   V+P  +  T L++   +  + R G+ IH ++ K GF  D
Sbjct: 110 FAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLD 169

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
                 L +MY +  +V+   +VF+ +  +D VSWN + + +         L +   M  
Sbjct: 170 LFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCE 229

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           +  KP+  T + +L A S+L  +  GK++H + ++   D    + T+LVDMY K G LE 
Sbjct: 230 ENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLET 289

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A   FD +  +++ ++ ++I +Y Q    + A+  F+KM  EG+K  + ++   L+ C+ 
Sbjct: 290 ARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACAD 349

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           +  L  GR +H ++V+ G   ++ V  +L++MY KC  +D A ++F     R   SWN M
Sbjct: 350 LGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAM 409

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           I G+ ++G    AL  F  M      PD  T+V V++A + + +    K
Sbjct: 410 ILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAK 458



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 159/312 (50%), Gaps = 9/312 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+++F  M E NVVSWN++++ Y ++ + ++ M +F  M D   K +  S+   L  
Sbjct: 287 LETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHA 346

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+ G ++ G+ +H +++ LG   +  +  SL+ MY KC   D A  +F +++   +V+W
Sbjct: 347 CADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSW 406

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    Q G   +A   F+ MR  +VKP+ F   S++ A  E       + IH V+ +
Sbjct: 407 NAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMR 466

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              + +  V  ALV MY + G +     +F+ ++ +   +WNA+   +  +      L +
Sbjct: 467 SCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALEL 526

Query: 241 FYQMLLKGFKPNMCTFIVILKAC--SSLSDVG---FGKQLHAHTIKHSLDGNHVVGTSLV 295
           F +M     KPN  TF+ ++ AC  S L + G   F      ++I+ S+D       ++V
Sbjct: 527 FEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHY----GAMV 582

Query: 296 DMYDKSGCLEDA 307
           D+  ++G L +A
Sbjct: 583 DLLGRAGRLNEA 594



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 153/311 (49%), Gaps = 14/311 (4%)

Query: 258 VILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK 317
           ++L+ CSSL ++   +Q+     K+ L   H   T LV ++ + G +++A   F+ + +K
Sbjct: 42  LLLERCSSLKEL---RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSK 98

Query: 318 DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLH 377
               Y  ++  +A+  + + AL+ F +MR + ++   +     L  C   A L  G+ +H
Sbjct: 99  LNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIH 158

Query: 378 SIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGE 437
            + VK+G  LD+F  T L  MYAKC  +++A  VF     RD  SWN ++ GY ++G+  
Sbjct: 159 GLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMAR 218

Query: 438 KALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFAC 496
            ALE  + M +E   P  IT V VL A S + LI  GK+ H  +++   G    +     
Sbjct: 219 MALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRS--GFDSLVNISTA 276

Query: 497 MIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKM 556
           ++D+  + G   E    + +  L  N + W +++ A         +E   E +L  + KM
Sbjct: 277 LVDMYAKCGSL-ETARQLFDGMLERNVVSWNSMIDAYVQ------NENPKEAMLIFQ-KM 328

Query: 557 ESNYVFPSDIS 567
               V P+D+S
Sbjct: 329 LDEGVKPTDVS 339


>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic [Vitis vinifera]
 gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
          Length = 880

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 201/596 (33%), Positives = 320/596 (53%), Gaps = 2/596 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A RVF+ M   ++VSW  +++ + E+G   + + L+  M       ++F+   +L   + 
Sbjct: 170 AYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAASSF 229

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G +  G++VHA  +     L+  L  +LVDMY KC   ++A+KV     + DV  W AI
Sbjct: 230 LG-LNYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAI 288

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   Q    +EA   F+ M  S V PN F  + ++ A +       G+ IH+ +   G 
Sbjct: 289 ISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGL 348

Query: 184 ESDTLVGNALVSMYME-NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           E+D  VGN+LV MYM+ +  +    R F  IA  + +SW +L + F ++   ++ +++F 
Sbjct: 349 ENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFG 408

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            M   G +PN  T   IL AC ++  +   ++LH + IK++ D + VVG +LVD Y   G
Sbjct: 409 AMQGVGVRPNSFTLSTILGACGTIKSLTQTRKLHGYIIKNNADNDVVVGNALVDAYAGLG 468

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            ++DA      + ++D+  YT++ T   Q G  EMAL     M  + ++ + F+LAS L+
Sbjct: 469 MVDDAWHVTSMMKHRDVITYTSLATRINQTGNHEMALNIITHMNKDDVRMDGFSLASFLS 528

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
             + +  +  G+ LH  +VK+G    + VS  LV +Y KCG I DA   F      D  S
Sbjct: 529 AAAGIPIMETGKQLHCYSVKSGLGSWISVSNGLVDLYGKCGCIHDAHRSFLEITEPDAVS 588

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN +I G   +G    AL AF  M   G  PD+IT ++VL ACSH GL++ G  +F S++
Sbjct: 589 WNGLIFGLASNGHVSSALSAFEDMRLAGVEPDQITCLLVLYACSHGGLVDMGLDYFQSMR 648

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           + +GI P + H+ C++D+LGRAG+  E  N I      P+AL+++ LLGAC  HGNI L 
Sbjct: 649 EKHGIRPQLDHYVCLVDLLGRAGRLEEAMNVIETMPFKPDALIYKTLLGACKLHGNIPLG 708

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           E  A + LEL+P   + YV  +++    GR       R ++  +G++K P  SW+E
Sbjct: 709 EHMARQGLELDPSDPAFYVLLANLYDDSGRSELGEKTRRMMRERGVRKNPGQSWME 764



 Score =  238 bits (607), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 141/434 (32%), Positives = 234/434 (53%), Gaps = 2/434 (0%)

Query: 51  KFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFY 110
           ++SL   +  F NS  ++ G  +H+  I++G   D FLS +L+ +Y KC     A ++F 
Sbjct: 15  EYSLLKDIVSFCNSRSVRDGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFD 74

Query: 111 RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC 170
            +   DV +W  +++   + G  +EA ++F+ M  S   PN+F L++ +R+ +   +   
Sbjct: 75  EMPCRDVASWTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNH 134

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
           G    A++ K GF+S+ ++G+AL+  Y + G      RVFE + + D VSW  + S F +
Sbjct: 135 GTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVE 194

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
             S  Q L+++++M+  G  PN  TF+ +L A SS   + +GK +HAH +   ++ N V+
Sbjct: 195 AGSWSQALQLYHRMIQTGVAPNEFTFVKLL-AASSFLGLNYGKLVHAHLMMWRIELNLVL 253

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
            T+LVDMY K   +EDA          D+F +TAII+ + Q+ +   A+  F +M   G+
Sbjct: 254 KTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGV 313

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS-IDDAE 409
             N FT +  LN CS +  L  G+ +HS  V  G   D+ V  +LV MY KC + I+DA 
Sbjct: 314 VPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAV 373

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
             F+G A  +  SW  +I G+ +HGL E++++ F  M   G  P+  T   +L AC  + 
Sbjct: 374 RAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGACGTIK 433

Query: 470 LIEEGKKHFSSIKK 483
            + + +K    I K
Sbjct: 434 SLTQTRKLHGYIIK 447



 Score =  234 bits (598), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 157/555 (28%), Positives = 275/555 (49%), Gaps = 8/555 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F  MP  +V SW  L++ Y + G+ ++ + LF SM    +  ++F+LST L+  + 
Sbjct: 69  ARQLFDEMPCRDVASWTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSA 128

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G    A+  + G   +  L  +L+D YSKCG    A +VF  + + D+V+W  +
Sbjct: 129 LREFNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMM 188

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           ++   + G   +A ++++ M ++ V PN+F    L+ A++  G    G+ +HA +  +  
Sbjct: 189 VSSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAASSFLG-LNYGKLVHAHLMMWRI 247

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E + ++  ALV MY +   +    +V +     D   W A+ S F       + +  F++
Sbjct: 248 ELNLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHE 307

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK-SG 302
           M   G  PN  T+  IL ACSS+  +  GKQ+H+  +   L+ +  VG SLVDMY K S 
Sbjct: 308 METSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSN 367

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            +EDA  AF  +A+ ++ ++T++I  +++ G  E ++K F  M+  G++ N FTL++ L 
Sbjct: 368 MIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILG 427

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C  + +L   R LH   +K     D+ V  ALV  YA  G +DDA  V      RD  +
Sbjct: 428 ACGTIKSLTQTRKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHRDVIT 487

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSI 481
           +  +     + G  E AL     M  +    D  +    LSA + + ++E GK+ H  S+
Sbjct: 488 YTSLATRINQTGNHEMALNIITHMNKDDVRMDGFSLASFLSAAAGIPIMETGKQLHCYSV 547

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE- 540
           K   G+   I     ++D+ G+ G   +      E    P+A+ W  L+   + +G++  
Sbjct: 548 KS--GLGSWISVSNGLVDLYGKCGCIHDAHRSFLEIT-EPDAVSWNGLIFGLASNGHVSS 604

Query: 541 -LDEKDAEKLLELEP 554
            L   +  +L  +EP
Sbjct: 605 ALSAFEDMRLAGVEP 619



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/369 (30%), Positives = 188/369 (50%), Gaps = 2/369 (0%)

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228
           R G  IH+ I K GF+ D  + N L+S+Y +   V+   ++F+ +  +D  SW  L S +
Sbjct: 32  RDGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCRDVASWTMLMSAY 91

Query: 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH 288
               + ++ L +F  ML+ G  PN  T    L++CS+L +   G +  A   K   D N 
Sbjct: 92  GKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSGFDSNP 151

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
           V+G++L+D Y K GC ++A   F+ + N D+ ++T +++S+ +AG    AL+ + +M   
Sbjct: 152 VLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQT 211

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
           G+  NEFT    L   S    L  G+L+H+  +     L++ + TALV MY KC SI+DA
Sbjct: 212 GVAPNEFTFVKLL-AASSFLGLNYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDA 270

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
             V K +   D   W  +I G+ +     +A+ AF  M   G VP+  T+  +L+ACS +
Sbjct: 271 VKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSI 330

Query: 469 GLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWEN 528
             ++ GK+  S +  + G+   +     ++D+  +     E          +PN + W +
Sbjct: 331 LALDLGKQIHSRV-VMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTS 389

Query: 529 LLGACSWHG 537
           L+   S HG
Sbjct: 390 LIAGFSEHG 398



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 120/445 (26%), Positives = 209/445 (46%), Gaps = 10/445 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A +V K   E +V  W A+++G+ +S   ++ +  F  M+      + F+ S +L  
Sbjct: 267 IEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNA 326

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKC-GLADNALKVFYRIKDPDVVA 119
            ++   +  G+ +H+  +  G   D  +  SLVDMY KC  + ++A++ F  I  P+V++
Sbjct: 327 CSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVIS 386

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W ++I    + G  +E+ K+F  M+   V+PN F L++++ A            +H  I 
Sbjct: 387 WTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGACGTIKSLTQTRKLHGYII 446

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K   ++D +VGNALV  Y   G V     V   + H+D +++ +L +R     + +  L 
Sbjct: 447 KNNADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHRDVITYTSLATRINQTGNHEMALN 506

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           I   M     + +  +    L A + +  +  GKQLH +++K  L     V   LVD+Y 
Sbjct: 507 IITHMNKDDVRMDGFSLASFLSAAAGIPIMETGKQLHCYSVKSGLGSWISVSNGLVDLYG 566

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K GC+ DA  +F  +   D  ++  +I   A  G    AL  F  MRL G++ ++ T   
Sbjct: 567 KCGCIHDAHRSFLEITEPDAVSWNGLIFGLASNGHVSSALSAFEDMRLAGVEPDQITCLL 626

Query: 360 CLNGCSPVATLANG-RLLHSIAVKTG--HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
            L  CS    +  G     S+  K G    LD +V   LV +  + G +++A  V +   
Sbjct: 627 VLYACSHGGLVDMGLDYFQSMREKHGIRPQLDHYV--CLVDLLGRAGRLEEAMNVIETMP 684

Query: 417 LR-DTASWNMMIGGYVKHG---LGE 437
            + D   +  ++G    HG   LGE
Sbjct: 685 FKPDALIYKTLLGACKLHGNIPLGE 709



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 4/176 (2%)

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
           ++ +G  +HS  +K G   DMF+S  L+++Y KC  + +A  +F     RD ASW M++ 
Sbjct: 30  SVRDGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCRDVASWTMLMS 89

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGIT 488
            Y K G  E+ALE F  ML  G  P+E T    L +CS +     G + F ++    G  
Sbjct: 90  AYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTR-FQALVTKSGFD 148

Query: 489 PTIKHFACMIDILGRAGKFTE---IENFITETKLTPNALVWENLLGACSWHGNIEL 541
                 + +ID   + G   E   +  ++    +    ++  + + A SW   ++L
Sbjct: 149 SNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQL 204


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  355 bits (910), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 191/601 (31%), Positives = 324/601 (53%), Gaps = 7/601 (1%)

Query: 4   AKRVFKSMPE-LNVVSWNALLNGYAESG---DGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           AK VF+++   L++  WN L+    ++    +G +V H       +  K   F+  +VLK
Sbjct: 57  AKLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYL--KPDAFTYPSVLK 114

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             +  G +  G++VH   I+ G A+D  +  S V MY+KC + ++A+K+F  + + DV +
Sbjct: 115 ACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVAS 174

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  +I+C  Q G  ++A ++F  M+ S  KP+   LT+++ +     D   G+ IH  + 
Sbjct: 175 WNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELV 234

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           + GF  D  V +ALV MY + G +     VFE I  ++ VSWN++ + +         + 
Sbjct: 235 RSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIE 294

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F +M  +G +P + T   IL ACS   ++  GK +H + I++ ++ +  V +SL+D+Y 
Sbjct: 295 LFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYF 354

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G +  A   F ++   ++ ++  +I+ Y + G    AL  F  MR  G+K +  T  S
Sbjct: 355 KCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTS 414

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L  CS +A L  G+ +H+  +++   ++  V  AL+ MYAKCG++D+A  +F     RD
Sbjct: 415 VLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERD 474

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SW  MI  Y  HG   +AL+ F  M      PD++TF+ +LSACSH GL++EG  +F+
Sbjct: 475 FVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFN 534

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK-LTPNALVWENLLGACSWHGN 538
            +   YG  P ++H++C+ID+LGR G+  E    +  T  +  +  +   L  AC  H  
Sbjct: 535 QMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKK 594

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           ++L E+    L+E +P   S Y+  S++ A+  +W++   VR  +   G+KK P CSWIE
Sbjct: 595 LDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIE 654

Query: 599 V 599
           V
Sbjct: 655 V 655



 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 152/517 (29%), Positives = 269/517 (52%), Gaps = 13/517 (2%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
           L ++LK   +S Y+K G+++H   + LG   +  L  SL+++Y  C L  +A  VF  I+
Sbjct: 6   LLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIE 65

Query: 114 DP-DVVAWGAIITCLDQQGCCQEAAKIFN-LMRESSVKPNQFVLTSLVRATTETGDQRCG 171
           +P D+  W  ++    +     E  ++F+ L+    +KP+ F   S+++A +  G    G
Sbjct: 66  NPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYG 125

Query: 172 ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY 231
           + +H  + K GF  D +V ++ V MY +        ++F+ +  +D  SWN + S +   
Sbjct: 126 KMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQD 185

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
             P++ L +F +M + GFKP+  T   ++ +C+ L D+  GK++H   ++     +  V 
Sbjct: 186 GQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVS 245

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
           ++LVDMY K GCLE A   F+ +  K++ ++ ++I  Y+  G+++  ++ FR+M  EGI+
Sbjct: 246 SALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIR 305

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
               TL+S L  CS    L  G+ +H   ++     D+FV+++L+ +Y KCG+I  AE V
Sbjct: 306 PTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENV 365

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F+     +  SWN+MI GYVK G   +AL  F  M   G  PD ITF  VL ACS + ++
Sbjct: 366 FQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVL 425

Query: 472 EEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
           E+GK+ H   I+    I   +     ++D+  + G   E  +   +     + + W +++
Sbjct: 426 EKGKEIHNFIIESKLEINEVV--MGALLDMYAKCGAVDEALHIFNQLP-ERDFVSWTSMI 482

Query: 531 GACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            A   HG        A + L+L  KM+ +   P  ++
Sbjct: 483 AAYGSHGQ-------AFEALKLFEKMQQSDAKPDKVT 512



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 122/372 (32%), Positives = 204/372 (54%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E A ++F  MPE +V SWN +++ Y + G  +K + LF  MK    K    +L+TV+   
Sbjct: 158 EDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSC 217

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           A    ++ G+ +H   +R G ALD F+S +LVDMY KCG  + A +VF +I+  +VV+W 
Sbjct: 218 ARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWN 277

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           ++I     +G  +   ++F  M E  ++P    L+S++ A + + + + G+ IH  I + 
Sbjct: 278 SMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRN 337

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
             E+D  V ++L+ +Y + G +     VF+ +   + VSWN + S +    S  + L IF
Sbjct: 338 RVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIF 397

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
             M   G KP+  TF  +L ACS L+ +  GK++H   I+  L+ N VV  +L+DMY K 
Sbjct: 398 TDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKC 457

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G +++A   F+ L  +D  ++T++I +Y   G+A  ALK F KM+    K ++ T  + L
Sbjct: 458 GAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAIL 517

Query: 362 NGCSPVATLANG 373
           + CS    +  G
Sbjct: 518 SACSHAGLVDEG 529



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 164/312 (52%), Gaps = 9/312 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E+AK VF+ +   NVVSWN+++ GY+  GD +  + LF  M +   + +  +LS++L  
Sbjct: 258 LEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMA 317

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            + S  ++ G+ +H   IR     D F++ SL+D+Y KCG   +A  VF  +   +VV+W
Sbjct: 318 CSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSW 377

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+   + G   EA  IF  MR++ VKP+    TS++ A ++      G+ IH  I +
Sbjct: 378 NVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIE 437

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              E + +V  AL+ MY + G V     +F  +  +D VSW ++ + +  +    + L++
Sbjct: 438 SKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKL 497

Query: 241 FYQMLLKGFKPNMCTFIVILKACS--SLSDVG---FGKQLHAHTIKHSLDGNHVVGTSLV 295
           F +M     KP+  TF+ IL ACS   L D G   F + +  +  K +++      + L+
Sbjct: 498 FEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHY----SCLI 553

Query: 296 DMYDKSGCLEDA 307
           D+  + G L +A
Sbjct: 554 DLLGRVGRLREA 565


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 199/631 (31%), Positives = 324/631 (51%), Gaps = 48/631 (7%)

Query: 16  VVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHA 75
           V  WN+L+  Y ++G   K ++LF  M  +      ++   V K       ++ G+  HA
Sbjct: 92  VYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHA 151

Query: 76  MAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQE 135
           +++  G   + F+  +LV MYS+C    +A KVF  +   DVV+W +II    + G  + 
Sbjct: 152 LSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKV 211

Query: 136 AAKIFNLM-RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALV 194
           A ++F+ M  E   +P+   L +++      G    G+ +H          +  VGN LV
Sbjct: 212 ALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLV 271

Query: 195 SMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF------------- 241
            MY + G +   + VF  ++ +D VSWNA+ + +      +  +R+F             
Sbjct: 272 DMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVV 331

Query: 242 ----------------------YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHT 279
                                  QML  G KPN  T I +L  C+S+  +  GK++H + 
Sbjct: 332 TWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYA 391

Query: 280 IKHSLD-------GNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK--DLFAYTAIITSYA 330
           IK+ +D         ++V   L+DMY K   ++ A   FDSL+ K  D+  +T +I  Y+
Sbjct: 392 IKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYS 451

Query: 331 QAGEAEMALKCFRKMRLEG--IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG-HLL 387
           Q G+A  AL+   +M  E    + N FT++  L  C+ +A L  G+ +H+ A++   + +
Sbjct: 452 QHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAV 511

Query: 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML 447
            +FVS  L+ MYAKCGSI DA  VF     ++  +W  ++ GY  HG GE+AL  F  M 
Sbjct: 512 PLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMR 571

Query: 448 DEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKF 507
             G+  D +T +VVL ACSH G+I++G ++F+ +K ++G++P  +H+AC++D+LGRAG+ 
Sbjct: 572 RIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRL 631

Query: 508 TEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
                 I E  + P  +VW   L  C  HG +EL E  AEK+ EL    + +Y   S++ 
Sbjct: 632 NAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLY 691

Query: 568 ATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           A  GRW D + +R+L+  +G+KK P CSW+E
Sbjct: 692 ANAGRWKDVTRIRSLMRHKGVKKRPGCSWVE 722



 Score =  234 bits (598), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 153/521 (29%), Positives = 240/521 (46%), Gaps = 53/521 (10%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD--VVAWGAII 124
           I   +++H   +  G  L   L+  L+  Y   G   +A+ +  R    D  V  W ++I
Sbjct: 41  ISQVKLIHQKLLSFG-ILTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLI 99

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
                 GC  +   +F LM   S  P+ +    + +A  E    RCGES HA+    GF 
Sbjct: 100 RSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFI 159

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
           S+  VGNALV+MY     +S   +VF+ ++  D VSWN++   +     P   L +F +M
Sbjct: 160 SNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRM 219

Query: 245 LLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
             + G +P+  T + +L  C+SL     GKQLH   +   +  N  VG  LVDMY K G 
Sbjct: 220 TNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGM 279

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE--------------- 348
           +++A   F +++ KD+ ++ A++  Y+Q G  E A++ F KM+ E               
Sbjct: 280 MDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISG 339

Query: 349 --------------------GIKSNEFTLASCLNGCSPVATLANGRLLHSIAV------- 381
                               GIK NE TL S L+GC+ V  L +G+ +H  A+       
Sbjct: 340 YAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLR 399

Query: 382 KTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL--RDTASWNMMIGGYVKHGLGEKA 439
           K GH  +  V   L+ MYAKC  +D A A+F   +   RD  +W +MIGGY +HG   KA
Sbjct: 400 KNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKA 459

Query: 440 LEAFRMMLDEG--YVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFAC 496
           LE    M +E     P+  T    L AC+ +  +  GK+ H  +++      P      C
Sbjct: 460 LELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVS-NC 518

Query: 497 MIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           +ID+  + G  ++    + +  +  N + W +L+     HG
Sbjct: 519 LIDMYAKCGSISD-ARLVFDNMMAKNEVTWTSLMTGYGMHG 558



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 114/418 (27%), Positives = 193/418 (46%), Gaps = 48/418 (11%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLKGFA 62
           A++VF  M   +VVSWN+++  YA+ G  +  + +F  M  +   +    +L  VL   A
Sbjct: 181 ARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCA 240

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           + G    G+ +H  A+      + F+   LVDMY+KCG+ D A  VF  +   DVV+W A
Sbjct: 241 SLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNA 300

Query: 123 IITCLDQQGCCQEAAKIFNLMRE-----------------------------------SS 147
           ++    Q G  ++A ++F  M+E                                   S 
Sbjct: 301 MVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSG 360

Query: 148 VKPNQFVLTSLVRATTETGDQRCGESIHAVICKY-------GFESDTLVGNALVSMYMEN 200
           +KPN+  L S++      G    G+ IH    KY       G   + +V N L+ MY + 
Sbjct: 361 IKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKC 420

Query: 201 GRVSYGSRVFEAIA--HQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG--FKPNMCTF 256
            +V     +F++++   +D V+W  +   +  +   ++ L +  +M  +    +PN  T 
Sbjct: 421 KKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTI 480

Query: 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGTSLVDMYDKSGCLEDAGVAFDSLA 315
              L AC+SL+ +  GKQ+HA+ +++  +   + V   L+DMY K G + DA + FD++ 
Sbjct: 481 SCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMM 540

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG 373
            K+   +T+++T Y   G  E AL  F +MR  G K +  TL   L  CS    +  G
Sbjct: 541 AKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQG 598



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 124/494 (25%), Positives = 207/494 (41%), Gaps = 84/494 (17%)

Query: 2   ELAKRVFKSMPE----LNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTV 57
           E A R+F+ M E    ++VV+W+A ++GYA+ G G + + +   M     K ++ +L +V
Sbjct: 312 EDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISV 371

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCALDK-------FLSCSLVDMYSKCGLADNALKVFY 110
           L G A+ G +  G+ +H  AI+    L K        +   L+DMY+KC   D A  +F 
Sbjct: 372 LSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFD 431

Query: 111 RI--KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRES--SVKPNQFVLTSLVRATTETG 166
            +  K+ DVV W  +I    Q G   +A ++ + M E     +PN F ++  + A     
Sbjct: 432 SLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLA 491

Query: 167 DQRCGESIHAVICKYGFESDTL-VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALF 225
             R G+ IHA   +    +  L V N L+ MY + G +S    VF+ +  ++ V+W +L 
Sbjct: 492 ALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLM 551

Query: 226 SRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLD 285
           + +  +   ++ L IF +M   GFK +  T +V+L ACS                     
Sbjct: 552 TGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACS--------------------- 590

Query: 286 GNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFA-------YTAIITSYAQAGEAEMA 338
                          SG ++     F+ +  K +F        Y  ++    +AG    A
Sbjct: 591 --------------HSGMIDQGMEYFNRM--KTVFGVSPGPEHYACLVDLLGRAGRLNAA 634

Query: 339 LKCFRKMRLEGIKSNEFTLASC--LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALV 396
           L+   +M +E          SC  ++G   +   A  ++    +   G        T L 
Sbjct: 635 LRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSY------TLLS 688

Query: 397 AMYAKCGSIDDAEAV-----FKGSALRDTASWNMMIGGYVKHGLGEK----ALEAFRMML 447
            +YA  G   D   +      KG   R   SW   I G     +G+K    A E ++++L
Sbjct: 689 NLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLL 748

Query: 448 DE-------GYVPD 454
           D        GYVP+
Sbjct: 749 DHMQRIKDIGYVPE 762



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 138/307 (44%), Gaps = 16/307 (5%)

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKD--LFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           + L+  Y   GCL  A          D  ++ + ++I SY   G A   L  F  M    
Sbjct: 63  SHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLS 122

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
              + +T       C  ++++  G   H++++ TG + ++FV  ALVAMY++C S+ DA 
Sbjct: 123 WTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDAR 182

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDE-GYVPDEITFVVVLSACSHM 468
            VF   ++ D  SWN +I  Y K G  + ALE F  M +E G  PD IT V VL  C+ +
Sbjct: 183 KVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASL 242

Query: 469 GLIEEGKKHFSSIKKIYGITPTIKHFA----CMIDILGRAGKFTEIENFITETKLTPNAL 524
           G    GK+        + +T  +        C++D+  + G   E  N +       + +
Sbjct: 243 GTHSLGKQ-----LHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDE-ANTVFSNMSVKDVV 296

Query: 525 VWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS--ATQGRWNDFSGVRAL 582
            W  ++   S  G  E   +  EK+ E + KM+    + + IS  A +G   +  GV   
Sbjct: 297 SWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDV-VTWSAAISGYAQRGLGYEALGVCRQ 355

Query: 583 LSSQGIK 589
           + S GIK
Sbjct: 356 MLSSGIK 362



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 114/233 (48%), Gaps = 7/233 (3%)

Query: 1   MELAKRVFKSMP--ELNVVSWNALLNGYAESGDGQKVMHLFCSM--KDMEKKFSKFSLST 56
           ++ A+ +F S+   E +VV+W  ++ GY++ GD  K + L   M  +D + + + F++S 
Sbjct: 423 VDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISC 482

Query: 57  VLKGFANSGYIKAGQVVHAMAIR-LGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP 115
            L   A+   ++ G+ +HA A+R    A+  F+S  L+DMY+KCG   +A  VF  +   
Sbjct: 483 ALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAK 542

Query: 116 DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG-ESI 174
           + V W +++T     G  +EA  IF+ MR    K +   L  ++ A + +G    G E  
Sbjct: 543 NEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYF 602

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-DSVSWNALFS 226
           + +   +G          LV +    GR++   R+ E +  +   V W A  S
Sbjct: 603 NRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLS 655


>gi|297829948|ref|XP_002882856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328696|gb|EFH59115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 753

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 190/605 (31%), Positives = 330/605 (54%), Gaps = 12/605 (1%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
            A+++F  MPE N++S+N+L++GY + G  ++ M LF   +D   K  KF+ +  L    
Sbjct: 101 FARQLFDRMPERNIISFNSLISGYTQVGFYEQAMELFLEARDDNLKLDKFTYAGALGFCG 160

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
               +  G+++H + +  G +   FL   L+DMYSKCG  D A+ +F R  + D V+W +
Sbjct: 161 ERCDLDFGKLLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCNERDQVSWNS 220

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRA---TTETGDQRCGESIHAVIC 179
           +I+   + G  +E   +   M  + +K   + L S+++A       G    G +IH    
Sbjct: 221 LISGYVRVGAAEEPLNLLAKMHRAGLKLTTYALGSVLKACCINLNEGLMEKGMAIHCYAA 280

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY-----ESP 234
           K G E D +V  AL+ MY +NG +    ++F  +  ++ V++NA+ S F        E+ 
Sbjct: 281 KLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPAKNVVTYNAMISGFLQMDDITDEAS 340

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
            +  ++F +M  +G +P+  TF V+LKACS+   + +G+Q+HA   K++   +  +G++L
Sbjct: 341 SEAFKLFMEMQRRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQSDEFIGSAL 400

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           +++Y   G  ED    F S + +D+ ++T+II  + Q  + E A   FR++    I+  E
Sbjct: 401 IELYALMGSTEDGMQCFASTSKQDIASWTSIIDCHVQNEQLESAFDLFRQLFSSPIRPEE 460

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS--TALVAMYAKCGSIDDAEAVF 412
           +T++  ++ C+  A L++G  +   A+K+G  +D + S  T+ ++MYAK G++  A  VF
Sbjct: 461 YTVSLMMSACADFAALSSGEQIQGYAIKSG--IDAYTSVKTSSISMYAKSGNMPLANKVF 518

Query: 413 KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE 472
                 D A+++ MI    +HG    AL  F  M   G  P++  F+ VL AC H GL+ 
Sbjct: 519 IEVQNPDVATYSAMISSLAQHGSAHDALNIFESMKTRGIKPNQQAFLGVLIACCHGGLVT 578

Query: 473 EGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
            G  +F ++K  YGI P  KHF C+ D+LGR G+ ++ EN I  +    + ++W  LL +
Sbjct: 579 HGVNYFQTMKNSYGINPNEKHFTCLADLLGRTGRLSDAENLILSSGFQDHPVMWRALLSS 638

Query: 533 CSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEP 592
           C  + +  + ++ AE+L+ELEP+   +YV   +I    G  +    VR L+  +G+KKEP
Sbjct: 639 CRVYKDSVIGKRVAERLMELEPEASGSYVLLHNIYNDSGVNSSAEEVRELMRDRGVKKEP 698

Query: 593 SCSWI 597
           + SWI
Sbjct: 699 ALSWI 703



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 120/428 (28%), Positives = 204/428 (47%), Gaps = 9/428 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  +F    E + VSWN+L++GY   G  ++ ++L   M     K + ++L +VLK 
Sbjct: 200 LDQAMSLFDRCNERDQVSWNSLISGYVRVGAAEEPLNLLAKMHRAGLKLTTYALGSVLKA 259

Query: 61  FA---NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
                N G ++ G  +H  A +LG   D  +  +L+DMY+K G    A+K+F  +   +V
Sbjct: 260 CCINLNEGLMEKGMAIHCYAAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPAKNV 319

Query: 118 VAWGAIITCLDQQG-----CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172
           V + A+I+   Q          EA K+F  M+   ++P+    + +++A +       G 
Sbjct: 320 VTYNAMISGFLQMDDITDEASSEAFKLFMEMQRRGLEPSPSTFSVVLKACSAAKTLEYGR 379

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
            IHA+ICK  F+SD  +G+AL+ +Y   G    G + F + + QD  SW ++       E
Sbjct: 380 QIHALICKNNFQSDEFIGSALIELYALMGSTEDGMQCFASTSKQDIASWTSIIDCHVQNE 439

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
             +    +F Q+     +P   T  +++ AC+  + +  G+Q+  + IK  +D    V T
Sbjct: 440 QLESAFDLFRQLFSSPIRPEEYTVSLMMSACADFAALSSGEQIQGYAIKSGIDAYTSVKT 499

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           S + MY KSG +  A   F  + N D+  Y+A+I+S AQ G A  AL  F  M+  GIK 
Sbjct: 500 SSISMYAKSGNMPLANKVFIEVQNPDVATYSAMISSLAQHGSAHDALNIFESMKTRGIKP 559

Query: 353 NEFTLASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
           N+      L  C     + +G     ++    G   +    T L  +  + G + DAE +
Sbjct: 560 NQQAFLGVLIACCHGGLVTHGVNYFQTMKNSYGINPNEKHFTCLADLLGRTGRLSDAENL 619

Query: 412 FKGSALRD 419
              S  +D
Sbjct: 620 ILSSGFQD 627



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/489 (24%), Positives = 235/489 (48%), Gaps = 18/489 (3%)

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           A SG +  G++ H   ++       +L  +L++MY KC     A ++F R+ + +++++ 
Sbjct: 59  AKSGSLVLGKLAHGHMVKSSLNPCLYLLNNLLNMYCKCRELGFARQLFDRMPERNIISFN 118

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           ++I+   Q G  ++A ++F   R+ ++K ++F     +    E  D   G+ +H ++   
Sbjct: 119 SLISGYTQVGFYEQAMELFLEARDDNLKLDKFTYAGALGFCGERCDLDFGKLLHGLVVVN 178

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G      + N L+ MY + G++     +F+    +D VSWN+L S +    + ++ L + 
Sbjct: 179 GLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCNERDQVSWNSLISGYVRVGAAEEPLNLL 238

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGF---GKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            +M   G K        +LKAC    + G    G  +H +  K  ++ + VV T+L+DMY
Sbjct: 239 AKMHRAGLKLTTYALGSVLKACCINLNEGLMEKGMAIHCYAAKLGMEFDIVVRTALLDMY 298

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGE-----AEMALKCFRKMRLEGIKSN 353
            K+G L++A   F  +  K++  Y A+I+ + Q  +     +  A K F +M+  G++ +
Sbjct: 299 AKNGSLKEAIKLFSLMPAKNVVTYNAMISGFLQMDDITDEASSEAFKLFMEMQRRGLEPS 358

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
             T +  L  CS   TL  GR +H++  K     D F+ +AL+ +YA  GS +D    F 
Sbjct: 359 PSTFSVVLKACSAAKTLEYGRQIHALICKNNFQSDEFIGSALIELYALMGSTEDGMQCFA 418

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
            ++ +D ASW  +I  +V++   E A + FR +      P+E T  +++SAC+    +  
Sbjct: 419 STSKQDIASWTSIIDCHVQNEQLESAFDLFRQLFSSPIRPEEYTVSLMMSACADFAALSS 478

Query: 474 GKKHFSSIKKIYGITPTIKHFACM----IDILGRAGKFTEIENFITETKLTPNALVWENL 529
           G++      + Y I   I  +  +    I +  ++G          E +  P+   +  +
Sbjct: 479 GEQ-----IQGYAIKSGIDAYTSVKTSSISMYAKSGNMPLANKVFIEVQ-NPDVATYSAM 532

Query: 530 LGACSWHGN 538
           + + + HG+
Sbjct: 533 ISSLAQHGS 541



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 154/327 (47%), Gaps = 8/327 (2%)

Query: 158 LVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQD 217
           L +   ++G    G+  H  + K        + N L++MY +   + +  ++F+ +  ++
Sbjct: 54  LFQTAAKSGSLVLGKLAHGHMVKSSLNPCLYLLNNLLNMYCKCRELGFARQLFDRMPERN 113

Query: 218 SVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHA 277
            +S+N+L S +      +Q + +F +      K +  T+   L  C    D+ FGK LH 
Sbjct: 114 IISFNSLISGYTQVGFYEQAMELFLEARDDNLKLDKFTYAGALGFCGERCDLDFGKLLHG 173

Query: 278 HTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEM 337
             + + L     +   L+DMY K G L+ A   FD    +D  ++ ++I+ Y + G AE 
Sbjct: 174 LVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCNERDQVSWNSLISGYVRVGAAEE 233

Query: 338 ALKCFRKMRLEGIKSNEFTLASCLNGCS---PVATLANGRLLHSIAVKTGHLLDMFVSTA 394
            L    KM   G+K   + L S L  C        +  G  +H  A K G   D+ V TA
Sbjct: 234 PLNLLAKMHRAGLKLTTYALGSVLKACCINLNEGLMEKGMAIHCYAAKLGMEFDIVVRTA 293

Query: 395 LVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG--LGEKALEAFRMMLD---E 449
           L+ MYAK GS+ +A  +F     ++  ++N MI G+++      E + EAF++ ++    
Sbjct: 294 LLDMYAKNGSLKEAIKLFSLMPAKNVVTYNAMISGFLQMDDITDEASSEAFKLFMEMQRR 353

Query: 450 GYVPDEITFVVVLSACSHMGLIEEGKK 476
           G  P   TF VVL ACS    +E G++
Sbjct: 354 GLEPSPSTFSVVLKACSAAKTLEYGRQ 380


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 190/549 (34%), Positives = 301/549 (54%), Gaps = 3/549 (0%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
           L+ +L     +  +K    +H   I        FL  +L+++Y+KCG  + AL +F    
Sbjct: 145 LNHLLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITH 204

Query: 114 D--PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG 171
                +V W ++IT L       +A  +FN MR S   PNQF  +S++ A+  T     G
Sbjct: 205 HHFKTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHG 264

Query: 172 ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY 231
           + +H++I K+GF+++  VG ALV MY +   +    RVF+ +  ++ VSWN++   F   
Sbjct: 265 QQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHN 324

Query: 232 ESPDQGLRIFYQMLL-KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
              D+ + +F  +L  K   PN  +   +L AC+++  + FG+Q+H   +K+ L     V
Sbjct: 325 NLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYV 384

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
             SL+DMY K    ++    F  + ++D+  +  ++  + Q  + E A   F  MR EGI
Sbjct: 385 MNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGI 444

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
             +E + ++ L+  + +A L  G  +H   +K G++ +M +  +L+ MYAKCGS+ DA  
Sbjct: 445 LPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQ 504

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           VF+G    +  SW  MI  Y  HG   + +E F  ML EG  P  +TFV VLSACSH G 
Sbjct: 505 VFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGR 564

Query: 471 IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
           +EEG  HF+S+KKI+ + P  +H+ACM+D+LGRAG   E + FI    + P   VW  LL
Sbjct: 565 VEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALL 624

Query: 531 GACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKK 590
           GAC  +GN+++  + AE+L E+EP    NYV  +++    GR  + + VR L+   G++K
Sbjct: 625 GACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRK 684

Query: 591 EPSCSWIEV 599
           EP CSWI+V
Sbjct: 685 EPGCSWIDV 693



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 130/501 (25%), Positives = 248/501 (49%), Gaps = 17/501 (3%)

Query: 16  VVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHA 75
           +V+W +L+   +      + + LF  M+      ++F+ S++L   A +  +  GQ +H+
Sbjct: 210 IVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQLHS 269

Query: 76  MAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQE 135
           +  + G   + F+  +LVDMY+KC    +A++VF ++ + ++V+W ++I           
Sbjct: 270 LIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDR 329

Query: 136 AAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALV 194
           A  +F +++RE +V PN+  ++S++ A    G    G  +H V+ KYG    T V N+L+
Sbjct: 330 AVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLM 389

Query: 195 SMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMC 254
            MY +      G ++F+ +  +D V+WN L   F   +  ++    F+ M  +G  P+  
Sbjct: 390 DMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEA 449

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
           +F  +L + +SL+ +  G  +H   IK     N  +  SL+ MY K G L DA   F+ +
Sbjct: 450 SFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGI 509

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
            + ++ ++TA+I++Y   G A   ++ F  M  EGI+ +  T    L+ CS    +  G 
Sbjct: 510 EDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEG- 568

Query: 375 LLHSIAVKTGHLLDMFVS--TALVAMYAKCGSIDDAEAVFKGSALRDTAS-WNMMIGGYV 431
           L H  ++K  H ++        +V +  + G +D+A+   +   ++ T S W  ++G   
Sbjct: 569 LAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACR 628

Query: 432 KHG---LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGIT 488
           K+G   +G +A E  R+   E Y P    +V++ + C+  G +EE  +    ++++ G+ 
Sbjct: 629 KYGNLKMGREAAE--RLFEMEPYNPG--NYVLLANMCTRSGRLEEANE----VRRLMGVN 680

Query: 489 PTIKHFAC-MIDILGRAGKFT 508
              K   C  ID+      FT
Sbjct: 681 GVRKEPGCSWIDVKNMTFVFT 701



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 169/323 (52%), Gaps = 10/323 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFS----KFSLST 56
           M  A RVF  MPE N+VSWN+++ G+  +    + + +F   KD+ ++ +    + S+S+
Sbjct: 296 MHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVF---KDVLREKTVIPNEVSVSS 352

Query: 57  VLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD 116
           VL   AN G +  G+ VH + ++ G     ++  SL+DMY KC   D  +K+F  + D D
Sbjct: 353 VLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRD 412

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
           VV W  ++    Q    +EA   F +MR   + P++   ++++ ++        G +IH 
Sbjct: 413 VVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHD 472

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
            I K G+  +  +  +L++MY + G +    +VFE I   + +SW A+ S +Q +   +Q
Sbjct: 473 QIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQ 532

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK--HSLDGNHVVGTSL 294
            + +F  ML +G +P+  TF+ +L ACS    V  G   H +++K  H ++        +
Sbjct: 533 VIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLA-HFNSMKKIHDMNPGPEHYACM 591

Query: 295 VDMYDKSGCLEDAGVAFDSLANK 317
           VD+  ++G L++A    +S+  K
Sbjct: 592 VDLLGRAGWLDEAKRFIESMPMK 614


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 195/570 (34%), Positives = 307/570 (53%), Gaps = 8/570 (1%)

Query: 36  MHLFCSMKDMEKKFSKFSLSTVLKGFANSG----YIKAGQVVHAMAIRLGCALDKFLSCS 91
           + LF S +    KF +FS    LK   N+      +K    +H+  +            +
Sbjct: 78  LQLFTSYQSGVPKFHQFSSVPDLKHLLNNAAKLKSLKHATQIHSQLVTTNNHASLANINT 137

Query: 92  LVDMYSKCGLADNALKVFYRIKDP--DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK 149
           L+ +Y+KCG   + L +F     P  +VV W  +I  L +     +A   FN MR + + 
Sbjct: 138 LLLLYAKCGSIHHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIY 197

Query: 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRV 209
           PN F  ++++ A         G+ IHA+I K+ F +D  V  AL+ MY + G +     V
Sbjct: 198 PNHFTFSAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENV 257

Query: 210 FEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDV 269
           F+ + H++ VSWN++   F   +   + + +F ++L  G  P+  +   +L AC+ L ++
Sbjct: 258 FDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLG--PDQVSISSVLSACAGLVEL 315

Query: 270 GFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSY 329
            FGKQ+H   +K  L G   V  SLVDMY K G  EDA   F    ++D+  +  +I   
Sbjct: 316 DFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGC 375

Query: 330 AQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDM 389
            +    E A   F+ M  EG++ +E + +S  +  + +A L  G ++HS  +KTGH+ + 
Sbjct: 376 FRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNS 435

Query: 390 FVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDE 449
            +S++LV MY KCGS+ DA  VF+ +   +   W  MI  + +HG   +A++ F  ML+E
Sbjct: 436 RISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNE 495

Query: 450 GYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTE 509
           G VP+ ITFV VLSACSH G I++G K+F+S+  ++ I P ++H+ACM+D+LGR G+  E
Sbjct: 496 GVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEE 555

Query: 510 IENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISAT 569
              FI      P++LVW  LLGAC  H N+E+  + AE+L +LEP    NY+  S+I   
Sbjct: 556 ACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFKLEPDNPGNYMLLSNIYIR 615

Query: 570 QGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            G   +   VR L+   G++KE  CSWI+V
Sbjct: 616 HGMLEEADEVRRLMGINGVRKESGCSWIDV 645



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 138/511 (27%), Positives = 240/511 (46%), Gaps = 32/511 (6%)

Query: 12  PELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQ 71
           P  NVV+W  L+N  + S    + +  F  M+      + F+ S +L   A++  +  GQ
Sbjct: 161 PSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQ 220

Query: 72  VVHAMAIRLGCAL-DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
            +HA+ I   C L D F++ +L+DMY+KCG    A  VF  +   ++V+W ++I    + 
Sbjct: 221 QIHAL-IHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKN 279

Query: 131 GCCQEAAKIFNLMRES-SVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
                A  +F   RE  S+ P+Q  ++S++ A     +   G+ +H  I K G      V
Sbjct: 280 KLYGRAIGVF---REVLSLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYV 336

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS---RFQDYESPDQGLRIFYQMLL 246
            N+LV MY + G     +++F     +D V+WN +     R +++E   Q    F  M+ 
Sbjct: 337 KNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFE---QACTYFQAMIR 393

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           +G +P+  ++  +  A +S++ +  G  +H+H +K     N  + +SLV MY K G + D
Sbjct: 394 EGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLD 453

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A   F      ++  +TA+IT + Q G A  A+K F +M  EG+     T  S L+ CS 
Sbjct: 454 AYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSH 513

Query: 367 VATLANG-RLLHSIA----VKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DT 420
              + +G +  +S+A    +K G  L+ +    +V +  + G +++A    +      D+
Sbjct: 514 TGKIDDGFKYFNSMANVHNIKPG--LEHY--ACMVDLLGRVGRLEEACRFIESMPFEPDS 569

Query: 421 ASWNMMIGGYVKHGLGEKALE-AFRMMLDEGYVPDEITFVVVLSACS-HMGLIEEGKKHF 478
             W  ++G   KH   E   E A R+   E   PD     ++LS      G++EE  +  
Sbjct: 570 LVWGALLGACGKHANVEMGREVAERLFKLE---PDNPGNYMLLSNIYIRHGMLEEADE-- 624

Query: 479 SSIKKIYGITPTIKHFAC-MIDILGRAGKFT 508
             ++++ GI    K   C  ID+  R   F 
Sbjct: 625 --VRRLMGINGVRKESGCSWIDVKNRTFVFN 653



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 174/366 (47%), Gaps = 13/366 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M LA+ VF  MP  N+VSWN+++ G+ ++    + + +F  +  +     + S+S+VL  
Sbjct: 251 MLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLGP--DQVSISSVLSA 308

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    +  G+ VH   ++ G     ++  SLVDMY KCGL ++A K+F    D DVV W
Sbjct: 309 CAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTW 368

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I    +    ++A   F  M    V+P++   +SL  A+        G  IH+ + K
Sbjct: 369 NVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLK 428

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G   ++ + ++LV+MY + G +    +VF      + V W A+ + F  +   ++ +++
Sbjct: 429 TGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKL 488

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVG-----FGKQLHAHTIKHSLDGNHVVGTSLV 295
           F +ML +G  P   TF+ +L ACS    +      F    + H IK  L+        +V
Sbjct: 489 FEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHY----ACMV 544

Query: 296 DMYDKSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSN 353
           D+  + G LE+A    +S+    D   + A++ +  +    EM  +   ++ +LE     
Sbjct: 545 DLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFKLEPDNPG 604

Query: 354 EFTLAS 359
            + L S
Sbjct: 605 NYMLLS 610


>gi|326507410|dbj|BAK03098.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 698

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 197/603 (32%), Positives = 328/603 (54%), Gaps = 11/603 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R+F  +P L+  SWN+LL  +   G       L  +M +     + F+L + L+  A 
Sbjct: 54  ARRLFDEIPRLDAASWNSLLAAHVSIGAHPAACRLLRAMHERGLAANTFALGSALRSAAA 113

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G    G  +H++A++ G A + F + +L+ MY+KCG   +A ++F  + + + V+W A+
Sbjct: 114 MGCSALGTQLHSLAVKAGLADNVFSATALLHMYAKCGRTRDACRLFDGMPERNTVSWNAL 173

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC--GESIHAVICKY 181
           +    + G    A ++F  M      P++    +L+   T   D  C     +H  I KY
Sbjct: 174 VAGYVESGKVAPAVQLFVEMEREGFLPDEATFAALL---TVVNDSTCFLMHQLHGKIVKY 230

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-DSVSWNALFSRFQDYESPDQGLRI 240
           G     +V NA ++ Y + G ++   R+F+ I  + D +SWNA+   +  +    + +R 
Sbjct: 231 GSALGLIVLNAAITAYSQCGALANSRRIFDEIGDRSDLISWNAMLGAYATHGMEHEAMRF 290

Query: 241 FYQML-LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           F  M+   G +P+M +F  I+ AC+   D G G  +H    K+  +G   V  +L+ MY 
Sbjct: 291 FASMMRASGVQPDMYSFTSIISACAEHRDHG-GTVIHGLVSKNGFEGVTHVCNALIAMYT 349

Query: 300 K--SGCL-EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           +    C+ EDA   FDSL  KD  ++ +++T Y+Q G +  AL+ FR M+ E I ++E+ 
Sbjct: 350 RFSENCMMEDAYKCFDSLLLKDTVSWNSMLTGYSQHGLSADALRFFRCMQSENITTDEYA 409

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
            ++ L  CS +A L  GR +H + +++G   + FVS++L+ MY+K G +DDA   F+ + 
Sbjct: 410 FSAALRSCSDLALLRLGRQIHGLVIRSGFASNNFVSSSLIFMYSKSGILDDAMKSFEEAD 469

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
              +  WN M+ GY +HG  +     F  ML+     D ITFV +++ACSH GL++EG +
Sbjct: 470 KSSSVPWNSMMFGYAQHGKAQAVRSLFNQMLELKVPLDHITFVGLITACSHAGLVDEGSE 529

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
             ++++  YGI   ++H+AC ID+ GRAG+  + +  I      P+A+VW  LLGAC  H
Sbjct: 530 ILNTMESRYGIPLRMEHYACGIDLYGRAGQLDKAKELIDSMPFEPDAMVWMTLLGACRVH 589

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSW 596
           GN+EL    A  LLE EP+  S YV  S++ +  G W+D + V+  + ++G+ K P  SW
Sbjct: 590 GNMELASDVASHLLEAEPRQHSTYVLLSNMYSGLGMWSDRAIVQKEMKNKGLSKVPGWSW 649

Query: 597 IEV 599
           IEV
Sbjct: 650 IEV 652



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 168/371 (45%), Gaps = 15/371 (4%)

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           HA + K G  S T     L +  + +  ++   R+F+ I   D+ SWN+L +      + 
Sbjct: 23  HATLLKSGVTSPTPWNQLLTAYSVSSPGLAAARRLFDEIPRLDAASWNSLLAAHVSIGAH 82

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
               R+   M  +G   N       L++ +++     G QLH+  +K  L  N    T+L
Sbjct: 83  PAACRLLRAMHERGLAANTFALGSALRSAAAMGCSALGTQLHSLAVKAGLADNVFSATAL 142

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           + MY K G   DA   FD +  ++  ++ A++  Y ++G+   A++ F +M  EG   +E
Sbjct: 143 LHMYAKCGRTRDACRLFDGMPERNTVSWNALVAGYVESGKVAPAVQLFVEMEREGFLPDE 202

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            T A+ L   +  +T      LH   VK G  L + V  A +  Y++CG++ ++  +F  
Sbjct: 203 ATFAALLTVVND-STCFLMHQLHGKIVKYGSALGLIVLNAAITAYSQCGALANSRRIFDE 261

Query: 415 SALR-DTASWNMMIGGYVKHGLGEKALEAF-RMMLDEGYVPDEITFVVVLSACS----HM 468
              R D  SWN M+G Y  HG+  +A+  F  MM   G  PD  +F  ++SAC+    H 
Sbjct: 262 IGDRSDLISWNAMLGAYATHGMEHEAMRFFASMMRASGVQPDMYSFTSIISACAEHRDHG 321

Query: 469 GLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFIT--ETKLTPNALVW 526
           G +  G     S     G+T        +I +  R  +   +E+     ++ L  + + W
Sbjct: 322 GTVIHG---LVSKNGFEGVTHVCN---ALIAMYTRFSENCMMEDAYKCFDSLLLKDTVSW 375

Query: 527 ENLLGACSWHG 537
            ++L   S HG
Sbjct: 376 NSMLTGYSQHG 386



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 130/320 (40%), Gaps = 36/320 (11%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A + F S+   + VSWN++L GY++ G     +  F  M+       +++ S  L+ 
Sbjct: 357 MEDAYKCFDSLLLKDTVSWNSMLTGYSQHGLSADALRFFRCMQSENITTDEYAFSAALRS 416

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ++   ++ G+ +H + IR G A + F+S SL+ MYSK G+ D+A+K F        V W
Sbjct: 417 CSDLALLRLGRQIHGLVIRSGFASNNFVSSSLIFMYSKSGILDDAMKSFEEADKSSSVPW 476

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG-ESIHAVIC 179
            +++    Q G  Q    +FN M E  V  +      L+ A +  G    G E ++ +  
Sbjct: 477 NSMMFGYAQHGKAQAVRSLFNQMLELKVPLDHITFVGLITACSHAGLVDEGSEILNTMES 536

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           +YG           + +Y   G++     + +++                          
Sbjct: 537 RYGIPLRMEHYACGIDLYGRAGQLDKAKELIDSMP------------------------- 571

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
                    F+P+   ++ +L AC    ++     + +H ++ +    H     L +MY 
Sbjct: 572 ---------FEPDAMVWMTLLGACRVHGNMELASDVASHLLE-AEPRQHSTYVLLSNMYS 621

Query: 300 KSGCLEDAGVAFDSLANKDL 319
             G   D  +    + NK L
Sbjct: 622 GLGMWSDRAIVQKEMKNKGL 641


>gi|212275047|ref|NP_001130303.1| uncharacterized protein LOC100191397 [Zea mays]
 gi|194688792|gb|ACF78480.1| unknown [Zea mays]
          Length = 706

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 193/602 (32%), Positives = 315/602 (52%), Gaps = 43/602 (7%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A R+F  MP  N VS+ A++ G A+ G     + LF  M     +    ++S+VL   A 
Sbjct: 95  AVRLFDGMPSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQ 154

Query: 64  --------SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP 115
                   +  I+  Q +HA+ +R G   D+ +  SLVD+Y+K    D A+KVF  +   
Sbjct: 155 ACAGDYNVARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSV 214

Query: 116 DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH 175
            +V+W  +IT   Q GC + A ++   M+ES  +PN+   ++++ +  +  D        
Sbjct: 215 SIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIKARD-------- 266

Query: 176 AVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD 235
                                      V     +F+ I      +WN L S +   E   
Sbjct: 267 ---------------------------VPSARAMFDKIPKPSVTTWNTLLSGYGQEELHQ 299

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
           + + +F +M  +  +P+  T  VIL +CS L +   GKQ+H+ +++  L  +  V + L+
Sbjct: 300 ETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVRLLLHNDMFVASGLI 359

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
           D+Y K G +  A + F+ +  +D+  + ++I+  A    +E A    ++MR  G+   E 
Sbjct: 360 DIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTES 419

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
           + AS +N C+ ++++  GR +H+  +K G+  +++V  +L+ MYAK G++DDA   F   
Sbjct: 420 SYASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCM 479

Query: 416 ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
            +++  +WN MI GY ++G GEKA+E F  ML     PD +TF+ VL+ CSH GL++E  
Sbjct: 480 IVKNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAV 539

Query: 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
             F+S++  YGITP ++H+ C+ID L RA +F E+E  I +     + ++WE LL AC  
Sbjct: 540 TFFNSMESNYGITPLVEHYTCLIDALARAARFAEVEAVIGKMPYKDDPILWEVLLAACVV 599

Query: 536 HGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCS 595
           H N EL E  A+ L  L+PK  S YV  S+I AT GR  D S VRAL+SS+G+ K    S
Sbjct: 600 HHNAELGEFSAKHLFRLDPKNPSPYVLLSNIYATLGRHGDASAVRALMSSRGVVKGRGYS 659

Query: 596 WI 597
           W+
Sbjct: 660 WV 661



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 114/452 (25%), Positives = 208/452 (46%), Gaps = 43/452 (9%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A +VF+S+  +++VSWN L+ GY + G  ++ M +   M++   + ++ + S +L  
Sbjct: 201 MDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNML-- 258

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              +  IKA  V  A A+                              F +I  P V  W
Sbjct: 259 ---ASCIKARDVPSARAM------------------------------FDKIPKPSVTTW 285

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +++   Q+   QE   +F  M+  +V+P++  L  ++ + +  G+   G+ +H+   +
Sbjct: 286 NTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVR 345

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
               +D  V + L+ +Y + G+V     +F  +  +D V WN++ S    +   ++    
Sbjct: 346 LLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDF 405

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
             QM   G  P   ++  ++  C+ LS +  G+Q+HA  +K   D N  VG SL+DMY K
Sbjct: 406 LKQMRENGMFPTESSYASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAK 465

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
           SG ++DA + F+ +  K+L A+  +I  YAQ G  E A++ F  M     K +  T  + 
Sbjct: 466 SGNMDDARLFFNCMIVKNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAV 525

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVS--TALVAMYAKCGSIDDAEAVFKGSALR 418
           L GCS  + L +  +    ++++ + +   V   T L+   A+     + EAV      +
Sbjct: 526 LTGCSH-SGLVDEAVTFFNSMESNYGITPLVEHYTCLIDALARAARFAEVEAVIGKMPYK 584

Query: 419 DTAS-WNMMIGGYVKHG---LGE-KALEAFRM 445
           D    W +++   V H    LGE  A   FR+
Sbjct: 585 DDPILWEVLLAACVVHHNAELGEFSAKHLFRL 616



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 166/340 (48%), Gaps = 16/340 (4%)

Query: 216 QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL 275
           +++VSWN + +      SP + L ++  ML +G  P   T   +L AC +++ +  G++ 
Sbjct: 4   RNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDGRRC 63

Query: 276 HAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEA 335
           H   +K  LDG+  V   L+ MY K G + DA   FD + + +  ++TA++   AQ G  
Sbjct: 64  HGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQGGAV 123

Query: 336 EMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA--------TLANGRLLHSIAVKTGHLL 387
           + AL+ F +M   GI+ +   ++S L  C+            +   + +H++ V+ G   
Sbjct: 124 DDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKGFGS 183

Query: 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML 447
           D  V  +LV +YAK   +D+A  VF+  +     SWN++I GY + G  E+A+E    M 
Sbjct: 184 DQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQ 243

Query: 448 DEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKF 507
           + G+ P+E+T+  +L++C     +   +  F  I K     P++  +  ++   G+    
Sbjct: 244 ESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIPK-----PSVTTWNTLLSGYGQEELH 298

Query: 508 TEIENF---ITETKLTPNALVWENLLGACSWHGNIELDEK 544
            E  +    +    + P+      +L +CS  GN EL ++
Sbjct: 299 QETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQ 338



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 116/261 (44%), Gaps = 41/261 (15%)

Query: 314 LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG 373
           + +++  ++  +I + A++G    AL+ ++ M  EG+    FTLAS L+ C  VA L +G
Sbjct: 1   MPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDG 60

Query: 374 RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKH 433
           R  H +AVK G     FV   L+ MY KCGS+ DA  +F G    +  S+  M+GG  + 
Sbjct: 61  RRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQG 120

Query: 434 GLGEKALEAFRMMLDEGYVPDEITFVVVLSACS--------------------------- 466
           G  + AL  F  M   G   D +    VL AC+                           
Sbjct: 121 GAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKG 180

Query: 467 -----HMG-----LIEEGKKHFSSIKKIYGITP-TIKHFACMIDILGRAG---KFTEIEN 512
                H+G     L  +G K   +IK    ++  +I  +  +I   G+ G   +  E+  
Sbjct: 181 FGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVLE 240

Query: 513 FITETKLTPNALVWENLLGAC 533
           F+ E+   PN + + N+L +C
Sbjct: 241 FMQESGFEPNEVTYSNMLASC 261



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 7/167 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A+  F  M   N+V+WN +++GYA++G G+K + LF  M   ++K    +   VL G
Sbjct: 469 MDDARLFFNCMIVKNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTG 528

Query: 61  FANSGYI-KAGQVVHAMAIRLG-CALDKFLSCSLVDMYSKCGLADNALKVFYRI--KDPD 116
            ++SG + +A    ++M    G   L +  +C L+D  ++         V  ++  KD D
Sbjct: 529 CSHSGLVDEAVTFFNSMESNYGITPLVEHYTC-LIDALARAARFAEVEAVIGKMPYKD-D 586

Query: 117 VVAWGAII-TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRAT 162
            + W  ++  C+             +L R     P+ +VL S + AT
Sbjct: 587 PILWEVLLAACVVHHNAELGEFSAKHLFRLDPKNPSPYVLLSNIYAT 633


>gi|413935694|gb|AFW70245.1| hypothetical protein ZEAMMB73_875976 [Zea mays]
          Length = 807

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 193/602 (32%), Positives = 315/602 (52%), Gaps = 43/602 (7%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A R+F  MP  N VS+ A++ G A+ G     + LF  M     +    ++S+VL   A 
Sbjct: 196 AVRLFDGMPSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQ 255

Query: 64  S--------GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP 115
           +          I+  Q +HA+ +R G   D+ +  SLVD+Y+K    D A+KVF  +   
Sbjct: 256 ACAGDYNVARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSV 315

Query: 116 DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH 175
            +V+W  +IT   Q GC + A ++   M+ES  +PN+   ++++ +  +  D        
Sbjct: 316 SIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIKARD-------- 367

Query: 176 AVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD 235
                                      V     +F+ I      +WN L S +   E   
Sbjct: 368 ---------------------------VPSARAMFDKIPKPSVTTWNTLLSGYGQEELHQ 400

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
           + + +F +M  +  +P+  T  VIL +CS L +   GKQ+H+ +++  L  +  V + L+
Sbjct: 401 ETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVRLLLHNDMFVASGLI 460

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
           D+Y K G +  A + F+ +  +D+  + ++I+  A    +E A    ++MR  G+   E 
Sbjct: 461 DIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTES 520

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
           + AS +N C+ ++++  GR +H+  +K G+  +++V  +L+ MYAK G++DDA   F   
Sbjct: 521 SYASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCM 580

Query: 416 ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
            +++  +WN MI GY ++G GEKA+E F  ML     PD +TF+ VL+ CSH GL++E  
Sbjct: 581 IVKNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAV 640

Query: 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
             F+S++  YGITP ++H+ C+ID L RA +F E+E  I +     + ++WE LL AC  
Sbjct: 641 TFFNSMESNYGITPLVEHYTCLIDALARAARFAEVEAVIGKMPYKDDPILWEVLLAACVV 700

Query: 536 HGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCS 595
           H N EL E  A+ L  L+PK  S YV  S+I AT GR  D S VRAL+SS+G+ K    S
Sbjct: 701 HHNAELGEFSAKHLFRLDPKNPSPYVLLSNIYATLGRHGDASAVRALMSSRGVVKGRGYS 760

Query: 596 WI 597
           W+
Sbjct: 761 WV 762



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 126/540 (23%), Positives = 223/540 (41%), Gaps = 91/540 (16%)

Query: 71  QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV------------- 117
           +  HA  +  G A D FL   LV++YS  GL  +AL+ F  +  P+V             
Sbjct: 30  KAAHARVLAAGLAADTFLLNRLVELYSLSGLPCHALRAFRALPHPNVYSYNAAISAACRA 89

Query: 118 ------------------VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLV 159
                             V+W  +I  + + G   EA +++  M +  + P  F L S++
Sbjct: 90  GDLAAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVL 149

Query: 160 RATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSV 219
            A         G   H +  K G +    V N L+ MY + G V+   R+F+ +   + V
Sbjct: 150 SACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEV 209

Query: 220 SWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSS--------LSDVGF 271
           S+ A+        + D  LR+F +M   G + +      +L AC+            +  
Sbjct: 210 SFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQL 269

Query: 272 GKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQ 331
            + +HA  ++     +  VG SLVD+Y K   +++A   F+SL++  + ++  +IT Y Q
Sbjct: 270 AQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQ 329

Query: 332 AGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFV 391
            G  E A++    M+  G + NE T ++ L  C                           
Sbjct: 330 LGCYERAMEVLEFMQESGFEPNEVTYSNMLASC--------------------------- 362

Query: 392 STALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGY 451
                    K   +  A A+F         +WN ++ GY +  L ++ ++ FR M  +  
Sbjct: 363 --------IKARDVPSARAMFDKIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNV 414

Query: 452 VPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDIL---GRAGKF 507
            PD  T  V+LS+CS +G  E GK+ H +S++ +      +   + +IDI    G+ G  
Sbjct: 415 QPDRTTLAVILSSCSRLGNFELGKQVHSASVRLLLHNDMFVA--SGLIDIYSKCGQVGIA 472

Query: 508 TEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
             I N +TE     + + W +++   + H         +E+  +   +M  N +FP++ S
Sbjct: 473 LIIFNMMTER----DVVCWNSMISGLAIH-------SLSEEAFDFLKQMRENGMFPTESS 521



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 114/452 (25%), Positives = 208/452 (46%), Gaps = 43/452 (9%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A +VF+S+  +++VSWN L+ GY + G  ++ M +   M++   + ++ + S +L  
Sbjct: 302 MDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNML-- 359

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              +  IKA  V  A A+                              F +I  P V  W
Sbjct: 360 ---ASCIKARDVPSARAM------------------------------FDKIPKPSVTTW 386

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +++   Q+   QE   +F  M+  +V+P++  L  ++ + +  G+   G+ +H+   +
Sbjct: 387 NTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVR 446

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
               +D  V + L+ +Y + G+V     +F  +  +D V WN++ S    +   ++    
Sbjct: 447 LLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDF 506

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
             QM   G  P   ++  ++  C+ LS +  G+Q+HA  +K   D N  VG SL+DMY K
Sbjct: 507 LKQMRENGMFPTESSYASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAK 566

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
           SG ++DA + F+ +  K+L A+  +I  YAQ G  E A++ F  M     K +  T  + 
Sbjct: 567 SGNMDDARLFFNCMIVKNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAV 626

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVS--TALVAMYAKCGSIDDAEAVFKGSALR 418
           L GCS  + L +  +    ++++ + +   V   T L+   A+     + EAV      +
Sbjct: 627 LTGCSH-SGLVDEAVTFFNSMESNYGITPLVEHYTCLIDALARAARFAEVEAVIGKMPYK 685

Query: 419 DTAS-WNMMIGGYVKHG---LGE-KALEAFRM 445
           D    W +++   V H    LGE  A   FR+
Sbjct: 686 DDPILWEVLLAACVVHHNAELGEFSAKHLFRL 717



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 7/167 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A+  F  M   N+V+WN +++GYA++G G+K + LF  M   ++K    +   VL G
Sbjct: 570 MDDARLFFNCMIVKNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTG 629

Query: 61  FANSGYI-KAGQVVHAMAIRLG-CALDKFLSCSLVDMYSKCGLADNALKVFYRI--KDPD 116
            ++SG + +A    ++M    G   L +  +C L+D  ++         V  ++  KD D
Sbjct: 630 CSHSGLVDEAVTFFNSMESNYGITPLVEHYTC-LIDALARAARFAEVEAVIGKMPYKD-D 687

Query: 117 VVAWGAII-TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRAT 162
            + W  ++  C+             +L R     P+ +VL S + AT
Sbjct: 688 PILWEVLLAACVVHHNAELGEFSAKHLFRLDPKNPSPYVLLSNIYAT 734


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 196/603 (32%), Positives = 325/603 (53%), Gaps = 7/603 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKF-SLSTVLK 59
           + L++  F  +   +V +WN++++ Y  +G  ++ +  F  +  + K  + F +   VLK
Sbjct: 124 VSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLK 183

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
                  +  G+ +H    +LG   D F++ SL+ MYS+ G    A  +F  +   D+ +
Sbjct: 184 ACQT---LVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGS 240

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W A+I+ L Q G   +A  + + MR   +  +   + S++    + GD      IH  + 
Sbjct: 241 WNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVI 300

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K+G E +  V NAL++MY + G +    +VF+ +  +D VSWN++ + ++  + P     
Sbjct: 301 KHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARG 360

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS-LDGNHVVGTSLVDMY 298
            F++M L G +P++ T + +    +   D    + +H   ++   L    V+G +++DMY
Sbjct: 361 FFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMY 420

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFTL 357
            K G ++ A   F+ +  KD+ ++  +I+ Y Q G A  A++ +R M     IK N+ T 
Sbjct: 421 AKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTW 480

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
            S L   + V  L  G  +H   +KT   LD+FV T L+ +Y KCG + DA  +F     
Sbjct: 481 VSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPR 540

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
             +  WN +I  +  HG GEKAL+ FR M DEG  PD +TF+ +LSACSH GL++EGK  
Sbjct: 541 ESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWF 600

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F  +++ YGI P++KH+ CM+D+LGRAG      +FI +  L P+A +W  LLGAC  HG
Sbjct: 601 FHLMQE-YGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHG 659

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           NIEL +  +++L E++ +    YV  S+I A  G+W     VR+L   +G+KK P  S I
Sbjct: 660 NIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSI 719

Query: 598 EVD 600
           EV+
Sbjct: 720 EVN 722



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 137/499 (27%), Positives = 245/499 (49%), Gaps = 17/499 (3%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           +HA+ +  G     F+S  LV++Y+  G    +   F +I+  DV  W ++I+   + G 
Sbjct: 95  LHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGH 154

Query: 133 CQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGN 191
            +EA   F  L+  +  + + +    +++A     D   G  IH  + K GF+ D  V  
Sbjct: 155 FREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVD---GRKIHCWVFKLGFQWDVFVAA 211

Query: 192 ALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKP 251
           +L+ MY   G V     +F+ +  +D  SWNA+ S      +  Q L +  +M L+G   
Sbjct: 212 SLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINM 271

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF 311
           +  T   IL  C+ L D+     +H + IKH L+    V  +L++MY K G L DA   F
Sbjct: 272 DSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVF 331

Query: 312 DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLA 371
             +  +D+ ++ +II +Y Q  +   A   F KM+L G++ +  TL S  +  +      
Sbjct: 332 QQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYK 391

Query: 372 NGRLLHSIAVKTGHLLD-MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGY 430
           N R +H   ++ G L++ + +  A++ MYAK G ID A  VF    ++D  SWN +I GY
Sbjct: 392 NSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGY 451

Query: 431 VKHGLGEKALEAFRMMLDEGYVP-DEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGIT 488
            ++GL  +A+E +RMM +   +  ++ T+V +L+A +H+G +++G + H   IK    + 
Sbjct: 452 TQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLD 511

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEK 548
             +    C+ID+ G+ G+  +      +     +++ W  ++     HG+        EK
Sbjct: 512 VFVG--TCLIDLYGKCGRLVDAMCLFYQVP-RESSVPWNAIISCHGIHGH-------GEK 561

Query: 549 LLELEPKMESNYVFPSDIS 567
            L+L  +M+   V P  ++
Sbjct: 562 ALKLFREMQDEGVKPDHVT 580



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/316 (31%), Positives = 158/316 (50%), Gaps = 7/316 (2%)

Query: 149 KPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSR 208
           K  +    SL  + T+T      + +HA++   G      +   LV++Y   G VS    
Sbjct: 73  KNEEIDFNSLFDSCTKT---LLAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRG 129

Query: 209 VFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL-KGFKPNMCTFIVILKACSSLS 267
            F+ I  +D  +WN++ S +       + +  FYQ+LL   F+ +  TF  +LKAC +L 
Sbjct: 130 TFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLV 189

Query: 268 DVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIIT 327
           D   G+++H    K     +  V  SL+ MY + G +  A   FD +  +D+ ++ A+I+
Sbjct: 190 D---GRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMIS 246

Query: 328 SYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL 387
              Q G A  AL    +MRLEGI  +  T+AS L  C+ +  ++   L+H   +K G   
Sbjct: 247 GLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEF 306

Query: 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML 447
           ++FVS AL+ MYAK G++ DA+ VF+   LRD  SWN +I  Y ++     A   F  M 
Sbjct: 307 ELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQ 366

Query: 448 DEGYVPDEITFVVVLS 463
             G  PD +T V + S
Sbjct: 367 LNGLEPDLLTLVSLAS 382


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 190/598 (31%), Positives = 324/598 (54%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F S+    VV+WNAL+ GYA+ G  ++   LF  M D   + S  +  +VL   ++
Sbjct: 111 ARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSS 170

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G+ VHA  +  G   D  +  +LV MY K G  D+A +VF  +   DV  +  +
Sbjct: 171 PAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVM 230

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    + G  ++A ++F  M++  +KPN+    S++           G+++HA     G 
Sbjct: 231 VGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGL 290

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D  V  +L+ MY   G +    RVF+ +  +D VSW  +   + +  + +    +F  
Sbjct: 291 VDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFAT 350

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +G +P+  T++ I+ AC+  +++   +++H+         + +V T+LV MY K G 
Sbjct: 351 MQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGA 410

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++DA   FD++  +D+ +++A+I +Y + G    A + F  M+   I+ +  T  + LN 
Sbjct: 411 IKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNA 470

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C  +  L  G  +++ A+K   +  + +  AL+ M AK GS++ A  +F     RD  +W
Sbjct: 471 CGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITW 530

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N MIGGY  HG   +AL  F  ML E + P+ +TFV VLSACS  G ++EG++ F+ + +
Sbjct: 531 NAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLE 590

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
             GI PT+K + CM+D+LGRAG+  E E  I    + P + +W +LL AC  HGN+++ E
Sbjct: 591 GRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAE 650

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           + AE+ L ++P   + YV  S + A  G W + + VR ++ S+GI+KE  C+WIEV G
Sbjct: 651 RAAERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAG 708



 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 159/524 (30%), Positives = 260/524 (49%), Gaps = 21/524 (4%)

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
           G+ V    I+ G  L+ +   +L+ +YS CG    A ++F  +++  VV W A+I    Q
Sbjct: 76  GKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQ 135

Query: 130 QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
            G  +EA  +F  M +  ++P+     S++ A +       G+ +HA +   GF SD  +
Sbjct: 136 VGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRI 195

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
           G ALVSMY++ G +    +VF+ +  +D  ++N +   +      ++   +FY+M   G 
Sbjct: 196 GTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGL 255

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
           KPN  +F+ IL  C +   + +GK +HA  +   L  +  V TSL+ MY   G +E A  
Sbjct: 256 KPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARR 315

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369
            FD++  +D+ ++T +I  YA+ G  E A   F  M+ EGI+ +  T    +N C+  A 
Sbjct: 316 VFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISAN 375

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           L + R +HS     G   D+ VSTALV MYAKCG+I DA  VF     RD  SW+ MIG 
Sbjct: 376 LNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGA 435

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITP 489
           YV++G G +A E F +M      PD +T++ +L+AC H+G ++ G + ++   K      
Sbjct: 436 YVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIK----AD 491

Query: 490 TIKHFACMIDILGRAGKFTEIE--NFITETKLTPNALVWENLLGACSWHGNIELDEKDAE 547
            + H      ++    K   +E   +I +T +  + + W  ++G  S HGN       A 
Sbjct: 492 LVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGN-------AR 544

Query: 548 KLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
           + L L  +M      P+ ++        F GV +  S  G   E
Sbjct: 545 EALYLFDRMLKERFRPNSVT--------FVGVLSACSRAGFVDE 580



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 140/527 (26%), Positives = 257/527 (48%), Gaps = 20/527 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A++VF  +   +V ++N ++ GYA+SGD +K   LF  M+ +  K +K S  ++L G
Sbjct: 209 MDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDG 268

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 +  G+ VHA  +  G   D  ++ SL+ MY+ CG  + A +VF  +K  DVV+W
Sbjct: 269 CWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSW 328

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I    + G  ++A  +F  M+E  ++P++     ++ A   + +      IH+ +  
Sbjct: 329 TVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDI 388

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GF +D LV  ALV MY + G +    +VF+A+  +D VSW+A+   + +     +    
Sbjct: 389 AGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFET 448

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F+ M     +P+  T+I +L AC  L  +  G +++   IK  L  +  +G +L+ M  K
Sbjct: 449 FHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAK 508

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +E A   FD++  +D+  + A+I  Y+  G A  AL  F +M  E  + N  T    
Sbjct: 509 HGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGV 568

Query: 361 LNGCSPVATLANGRLLHSIAVK-TGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
           L+ CS    +  GR   +  ++  G +  + +   +V +  + G +D+AE + K   ++ 
Sbjct: 569 LSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKP 628

Query: 420 TAS-WNMMIGGYVKHG---LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           T+S W+ ++     HG   + E+A E  R ++ + Y  D   +V +    SHM       
Sbjct: 629 TSSIWSSLLVACRIHGNLDVAERAAE--RCLMIDPY--DGAVYVQL----SHMYAAAGMW 680

Query: 476 KHFSSIKKIYGITPTIKHFACM-IDILGRAGKFTEIENFITETKLTP 521
           ++ + ++K+       K   C  I++ G+      +  F+ E +  P
Sbjct: 681 ENVAKVRKVMESRGIRKEQGCTWIEVAGK------VHTFVVEDRSHP 721



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/422 (28%), Positives = 214/422 (50%), Gaps = 43/422 (10%)

Query: 158 LVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQD 217
           L +  TE  D   G+ +   I + G + +    N L+ +Y   G V+   ++F+++ ++ 
Sbjct: 63  LFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKT 122

Query: 218 SVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHA 277
            V+WNAL + +       +   +F QM+ +G +P++ TF+ +L ACSS + + +GK++HA
Sbjct: 123 VVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHA 182

Query: 278 HTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEM 337
             +      +  +GT+LV MY K G ++DA   FD L  +D+  +  ++  YA++G+ E 
Sbjct: 183 QVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEK 242

Query: 338 ALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVA 397
           A + F +M+  G+K N+ +  S L+GC     LA G+ +H+  +  G + D+ V+T+L+ 
Sbjct: 243 AFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIR 302

Query: 398 MYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEIT 457
           MY  CGSI+ A  VF    +RD  SW +MI GY ++G  E A   F  M +EG  PD IT
Sbjct: 303 MYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRIT 362

Query: 458 FVVVLSACS-------------------------------HM----GLIEEGKKHFSSIK 482
           ++ +++AC+                               HM    G I++ ++ F ++ 
Sbjct: 363 YMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMP 422

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTE-IENF--ITETKLTPNALVWENLLGACSWHGNI 539
           +       +  ++ MI      G  TE  E F  +  + + P+ + + NLL AC   G +
Sbjct: 423 R-----RDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGAL 477

Query: 540 EL 541
           ++
Sbjct: 478 DV 479



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 91/286 (31%), Positives = 144/286 (50%), Gaps = 2/286 (0%)

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
           T++ + + C+ L D   GKQ+  H I+     N     +L+ +Y   G + +A   FDS+
Sbjct: 59  TYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSV 118

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
            NK +  + A+I  YAQ G  + A   FR+M  EG++ +  T  S L+ CS  A L  G+
Sbjct: 119 ENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGK 178

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
            +H+  V  G + D  + TALV+MY K GS+DDA  VF G  +RD +++N+M+GGY K G
Sbjct: 179 EVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSG 238

Query: 435 LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHF 494
             EKA E F  M   G  P++I+F+ +L  C     +  GK   +      G+   I+  
Sbjct: 239 DWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNA-GLVDDIRVA 297

Query: 495 ACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
             +I +    G            K+  + + W  ++   + +GNIE
Sbjct: 298 TSLIRMYTTCGSIEGARRVFDNMKVR-DVVSWTVMIEGYAENGNIE 342


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 198/622 (31%), Positives = 322/622 (51%), Gaps = 73/622 (11%)

Query: 49  FSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKV 108
           F+K  L + +K   ++ Y++    VHA  I+ G + + F+   L+D YSKCG  ++  +V
Sbjct: 22  FAKL-LDSCIKSKLSAIYVR---YVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQV 77

Query: 109 FYRIKDPDVVAWGAIITCLDQQG-----------------C--------------CQEAA 137
           F ++   ++  W +++T L + G                 C              C+EA 
Sbjct: 78  FDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEAL 137

Query: 138 KIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMY 197
             F +M +     N++   S++ A +   D   G  +H++I K  F SD  +G+ALV MY
Sbjct: 138 CYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMY 197

Query: 198 MENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFI 257
            + G V+   RVF+ +  ++ VSWN+L + F+      + L +F  ML    +P+  T  
Sbjct: 198 SKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLA 257

Query: 258 VILKACSSLSDVGFGKQLHAHTIKHS-LDGNHVVGTSLVDMYDKSGCLEDAGVAFDS--- 313
            ++ AC+SLS +  G+++H   +K+  L  + ++  + VDMY K   +++A   FDS   
Sbjct: 258 SVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPI 317

Query: 314 ----------------------------LANKDLFAYTAIITSYAQAGEAEMALKCFRKM 345
                                       +A +++ ++ A+I  Y Q GE E AL  F  +
Sbjct: 318 RNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLL 377

Query: 346 RLEGIKSNEFTLASCLNGCSPVATLANGR------LLHSIAVKTGHLLDMFVSTALVAMY 399
           + E +    ++ A+ L  C+ +A L  G       L H    ++G   D+FV  +L+ MY
Sbjct: 378 KRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMY 437

Query: 400 AKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFV 459
            KCG +++   VF+    RD  SWN MI G+ ++G G +ALE FR ML+ G  PD IT +
Sbjct: 438 VKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMI 497

Query: 460 VVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKL 519
            VLSAC H G +EEG+ +FSS+ + +G+ P   H+ CM+D+LGRAG   E ++ I E  +
Sbjct: 498 GVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPM 557

Query: 520 TPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGV 579
            P++++W +LL AC  H NI L +  AEKLLE+EP     YV  S++ A  G+W D   V
Sbjct: 558 QPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNV 617

Query: 580 RALLSSQGIKKEPSCSWIEVDG 601
           R  +  +G+ K+P CSWI++ G
Sbjct: 618 RKSMRKEGVTKQPGCSWIKIQG 639



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 130/490 (26%), Positives = 237/490 (48%), Gaps = 55/490 (11%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  +F+SMPE +  +WN++++G+A+    ++ +  F  M       +++S ++VL  
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSA 161

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    +  G  VH++  +     D ++  +LVDMYSKCG  ++A +VF  + D +VV+W
Sbjct: 162 CSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSW 221

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++ITC +Q G   EA  +F +M ES V+P++  L S++ A       + G+ +H  + K
Sbjct: 222 NSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVK 281

Query: 181 YG-FESDTLVGNALVSMYMENGRVSYGSRVFEA--------------------------- 212
                +D ++ NA V MY +  R+     +F++                           
Sbjct: 282 NDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARL 341

Query: 213 ----IAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSD 268
               +A ++ VSWNAL + +      ++ L +F  +  +   P   +F  ILKAC+ L++
Sbjct: 342 MFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAE 401

Query: 269 VGFGKQLHAHTIKHSL------DGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAY 322
           +  G Q H H +KH        + +  VG SL+DMY K GC+E+  + F  +  +D  ++
Sbjct: 402 LHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSW 461

Query: 323 TAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVK 382
            A+I  +AQ G    AL+ FR+M   G K +  T+   L+ C     +  GR   S   +
Sbjct: 462 NAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTR 521

Query: 383 ---TGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DTASW-----------NMMI 427
                 L D +  T +V +  + G +++A+++ +   ++ D+  W           N+ +
Sbjct: 522 DFGVAPLRDHY--TCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITL 579

Query: 428 GGYVKHGLGE 437
           G YV   L E
Sbjct: 580 GKYVAEKLLE 589


>gi|297823163|ref|XP_002879464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325303|gb|EFH55723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 713

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 199/597 (33%), Positives = 320/597 (53%), Gaps = 14/597 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESG---DGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           A  +F ++   +VVSWN+L+ GY+++G       VM LF  M+  +   + ++L+ + K 
Sbjct: 70  AHSIFNAIICKDVVSWNSLITGYSQNGGISSSHTVMQLFREMRAQDILPNAYTLAGIFKA 129

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ++      G+  HA+ +++    D ++  SLV MY K GL     K  Y      +V +
Sbjct: 130 ESSLQSCTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGL-----KYLY------MVYY 178

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
           G  +         Q  + I  L  +     + +V T+++ +   T     G  IH +  K
Sbjct: 179 GFWLCYKKDVLRRQLKSSICFLEEKEKESDSDYVFTAVLSSLAATVYVGLGRQIHGITVK 238

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G      + NALV+MY +   ++   ++F++   ++S++W+A+ + +       + +++
Sbjct: 239 NGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAIKL 298

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M   G KP+  T + +L ACS +  +  GKQLH+  +K   + +    T+LVDMY K
Sbjct: 299 FSRMFSAGIKPSEYTIVGVLNACSDICYLVEGKQLHSFLLKLGFERHLFATTALVDMYAK 358

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
           +GCL DA   FD L  +D+  +T++I+ Y Q  + E AL  +R+M+  GI  N+ T+AS 
Sbjct: 359 AGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASV 418

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L  CS +ATL  G+ +H   +K G  L++ + +AL  MY KCGS++D   VF+ +  +D 
Sbjct: 419 LKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYTKCGSLEDGNLVFRRTPNKDV 478

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SWN MI G   +G G++ALE F  ML EG  PD++TFV ++SACSH G +E G  +F  
Sbjct: 479 VSWNAMISGLSHNGQGDEALELFEEMLAEGTEPDDVTFVNIISACSHKGFVERGWSYFHM 538

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +   +G+ P + H+ACM+D+L RAG+  E + FI    +     +W  LL AC  HGN E
Sbjct: 539 MSDQFGLDPKVDHYACMVDVLSRAGQLKETKEFIESASIDHGLCLWRILLSACKNHGNCE 598

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           L     EKL+ L  +  S YV  + I    GR  D   V  L+ + G+ KE  CSWI
Sbjct: 599 LGVYAGEKLMSLGSRESSTYVQLAGIYTALGRMRDVERVWKLMRTNGVSKEVGCSWI 655



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 155/522 (29%), Positives = 246/522 (47%), Gaps = 32/522 (6%)

Query: 55  STVLKGFANSGYIK---AGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYR 111
           ST+LK   +    +   AG+ VHA  IR G +     +  LV+ Y+KCG    A  +F  
Sbjct: 17  STLLKALTHHSQHRNLVAGRAVHAQIIRTGTSTCTQHANVLVNFYAKCGQLAKAHSIFNA 76

Query: 112 IKDPDVVAWGAIITCLDQQG---CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ 168
           I   DVV+W ++IT   Q G         ++F  MR   + PN + L  + +A +     
Sbjct: 77  IICKDVVSWNSLITGYSQNGGISSSHTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSC 136

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEA--IAHQDSVSWNALFS 226
             G   HA++ K     D  V  +LV MY + G + Y   V+    + ++  V    L S
Sbjct: 137 TVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAG-LKYLYMVYYGFWLCYKKDVLRRQLKS 195

Query: 227 RFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDG 286
                E  ++     Y             F  +L + ++   VG G+Q+H  T+K+ L G
Sbjct: 196 SICFLEEKEKESDSDY------------VFTAVLSSLAATVYVGLGRQIHGITVKNGLLG 243

Query: 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR 346
              +  +LV MY K   L +A   FDS  +++   ++A++T Y+Q GE+  A+K F +M 
Sbjct: 244 FVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAIKLFSRMF 303

Query: 347 LEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSID 406
             GIK +E+T+   LN CS +  L  G+ LHS  +K G    +F +TALV MYAK G + 
Sbjct: 304 SAGIKPSEYTIVGVLNACSDICYLVEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLA 363

Query: 407 DAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
           DA   F     RD A W  +I GYV++   E+AL  +R M   G +P++ T   VL ACS
Sbjct: 364 DARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACS 423

Query: 467 HMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV 525
            +  +E GK+ H  +IK  +G+   I   + +  +  + G   E  N +       + + 
Sbjct: 424 SLATLELGKQVHGHTIKHGFGLEVPIG--SALSTMYTKCGSL-EDGNLVFRRTPNKDVVS 480

Query: 526 WENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           W  ++   S +G         ++ LEL  +M +    P D++
Sbjct: 481 WNAMISGLSHNGQ-------GDEALELFEEMLAEGTEPDDVT 515



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 126/427 (29%), Positives = 201/427 (47%), Gaps = 37/427 (8%)

Query: 151 NQFVLTS-LVRATTETGDQR---CGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYG 206
           N F  TS L++A T     R    G ++HA I + G  + T   N LV+ Y + G+++  
Sbjct: 11  NPFSHTSTLLKALTHHSQHRNLVAGRAVHAQIIRTGTSTCTQHANVLVNFYAKCGQLAKA 70

Query: 207 SRVFEAIAHQDSVSWNAL---FSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKAC 263
             +F AI  +D VSWN+L   +S+     S    +++F +M  +   PN  T   I KA 
Sbjct: 71  HSIFNAIICKDVVSWNSLITGYSQNGGISSSHTVMQLFREMRAQDILPNAYTLAGIFKAE 130

Query: 264 SSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC--LEDAGVAFDSLANKDLFA 321
           SSL     G+Q HA  +K S  G+  V TSLV MY K+G   L      F     KD+  
Sbjct: 131 SSLQSCTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLKYLYMVYYGFWLCYKKDVL- 189

Query: 322 YTAIITSYAQAGEAEMALK---CFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHS 378
                            LK   CF + + E    +++   + L+  +    +  GR +H 
Sbjct: 190 --------------RRQLKSSICFLEEK-EKESDSDYVFTAVLSSLAATVYVGLGRQIHG 234

Query: 379 IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEK 438
           I VK G L  + +S ALV MY+KC S+++A  +F  S  R++ +W+ M+ GY ++G   +
Sbjct: 235 ITVKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLE 294

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMI 498
           A++ F  M   G  P E T V VL+ACS +  + EGK+  S + K+ G    +     ++
Sbjct: 295 AIKLFSRMFSAGIKPSEYTIVGVLNACSDICYLVEGKQLHSFLLKL-GFERHLFATTALV 353

Query: 499 DILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMES 558
           D+  +AG   +        +    AL W +L+          +   D E+ L L  +M++
Sbjct: 354 DMYAKAGCLADARKGFDCLQERDVAL-WTSLISG-------YVQNSDNEEALILYRRMKT 405

Query: 559 NYVFPSD 565
             + P+D
Sbjct: 406 AGIIPND 412



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 61/136 (44%), Gaps = 2/136 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E    VF+  P  +VVSWNA+++G + +G G + + LF  M     +    +   ++  
Sbjct: 463 LEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGTEPDDVTFVNIISA 522

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCG-LADNALKVFYRIKDPDVV 118
            ++ G+++ G    H M+ + G          +VD+ S+ G L +    +     D  + 
Sbjct: 523 CSHKGFVERGWSYFHMMSDQFGLDPKVDHYACMVDVLSRAGQLKETKEFIESASIDHGLC 582

Query: 119 AWGAIITCLDQQGCCQ 134
            W  +++     G C+
Sbjct: 583 LWRILLSACKNHGNCE 598


>gi|224090525|ref|XP_002309013.1| predicted protein [Populus trichocarpa]
 gi|222854989|gb|EEE92536.1| predicted protein [Populus trichocarpa]
          Length = 583

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 187/536 (34%), Positives = 305/536 (56%), Gaps = 4/536 (0%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           ++ G  +HA+AI+     D  +S  ++++Y+KC     A +VF  + + ++V+W A+I+ 
Sbjct: 19  LRQGLPLHAIAIKTATRSDVIVSNHILNLYAKCRKLREARQVFDEMSERNLVSWSAMISG 78

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
            +Q G   E      L  + ++ PN++V  S++ A         G+ IH    K+G +S 
Sbjct: 79  YEQIG---EPISALGLFSKLNIVPNEYVYASVISACASLKGLVQGKQIHGQALKFGLDSV 135

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
           + V NAL++MYM+ G+ S     +      + V++NAL + F + + PD+G  +   M  
Sbjct: 136 SFVSNALITMYMKCGKCSDALLAYNEALELNPVAYNALITGFVENQQPDKGFEVLRMMYQ 195

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
            GF P+  TF+ +L  C+S  D+  G+ LH  TIK  L+    +G  ++ MY K   LE+
Sbjct: 196 DGFFPDRFTFVGLLGTCNSRDDLKRGELLHCQTIKLKLNSTAFIGNLIITMYSKLNLLEE 255

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE-GIKSNEFTLASCLNGCS 365
           A  AF S+  KDL ++   I+S +   + E AL+ F++M  E  ++ +EFT AS L  CS
Sbjct: 256 AEKAFRSIEEKDLISWNTFISSCSHCNDHEKALEAFKEMLNECRVRPDEFTFASALAACS 315

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
            +A++ NG+ +H   ++T    D+    AL+ MYAKCG I  A  +F     ++  SWN 
Sbjct: 316 GLASMCNGKQIHGHLIRTRLYQDVGAGNALINMYAKCGCIAKAYYIFSKMEHQNLVSWNT 375

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIY 485
           MI G+  HG G KA E F  M   G  PD +TFV +L+A +H GL++EG  +F+S+++ Y
Sbjct: 376 MIAGFGNHGFGGKAFELFAKMKTMGVKPDSVTFVGLLTASNHAGLVDEGLVYFNSMEETY 435

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKD 545
           GI+P I+HF+C+ID+LGRAG+  E + ++ +     + +V  +LL AC  HG+++  +  
Sbjct: 436 GISPEIEHFSCLIDLLGRAGRLNEAKEYMKKFPFGHDTVVLGSLLSACRLHGDVDTGKCF 495

Query: 546 AEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           A +LL+L+P   S YV  S++ A+   W+  +    LL   G+KKEP  S IEV+G
Sbjct: 496 ARQLLKLQPATTSPYVLLSNLYASDEMWDGVAEAWKLLKGSGLKKEPGHSLIEVNG 551



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 199/412 (48%), Gaps = 5/412 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF  M E N+VSW+A+++GY + G+    + LF  +  +    +++  ++V+   A+
Sbjct: 57  ARQVFDEMSERNLVSWSAMISGYEQIGEPISALGLFSKLNIVP---NEYVYASVISACAS 113

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G+ +H  A++ G     F+S +L+ MY KCG   +AL  +    + + VA+ A+
Sbjct: 114 LKGLVQGKQIHGQALKFGLDSVSFVSNALITMYMKCGKCSDALLAYNEALELNPVAYNAL 173

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           IT   +     +  ++  +M +    P++F    L+       D + GE +H    K   
Sbjct: 174 ITGFVENQQPDKGFEVLRMMYQDGFFPDRFTFVGLLGTCNSRDDLKRGELLHCQTIKLKL 233

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            S   +GN +++MY +   +    + F +I  +D +SWN   S        ++ L  F +
Sbjct: 234 NSTAFIGNLIITMYSKLNLLEEAEKAFRSIEEKDLISWNTFISSCSHCNDHEKALEAFKE 293

Query: 244 MLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           ML +   +P+  TF   L ACS L+ +  GKQ+H H I+  L  +   G +L++MY K G
Sbjct: 294 MLNECRVRPDEFTFASALAACSGLASMCNGKQIHGHLIRTRLYQDVGAGNALINMYAKCG 353

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
           C+  A   F  + +++L ++  +I  +   G    A + F KM+  G+K +  T    L 
Sbjct: 354 CIAKAYYIFSKMEHQNLVSWNTMIAGFGNHGFGGKAFELFAKMKTMGVKPDSVTFVGLLT 413

Query: 363 GCSPVATLANGRL-LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
             +    +  G +  +S+    G   ++   + L+ +  + G +++A+   K
Sbjct: 414 ASNHAGLVDEGLVYFNSMEETYGISPEIEHFSCLIDLLGRAGRLNEAKEYMK 465



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 97/324 (29%), Positives = 163/324 (50%), Gaps = 4/324 (1%)

Query: 154 VLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAI 213
           ++ SL+   ++T   R G  +HA+  K    SD +V N ++++Y +  ++    +VF+ +
Sbjct: 5   LVGSLIHQCSKTKALRQGLPLHAIAIKTATRSDVIVSNHILNLYAKCRKLREARQVFDEM 64

Query: 214 AHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGK 273
           + ++ VSW+A+ S ++    P   L +F ++      PN   +  ++ AC+SL  +  GK
Sbjct: 65  SERNLVSWSAMISGYEQIGEPISALGLFSKL---NIVPNEYVYASVISACASLKGLVQGK 121

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
           Q+H   +K  LD    V  +L+ MY K G   DA +A++     +  AY A+IT + +  
Sbjct: 122 QIHGQALKFGLDSVSFVSNALITMYMKCGKCSDALLAYNEALELNPVAYNALITGFVENQ 181

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST 393
           + +   +  R M  +G   + FT    L  C+    L  G LLH   +K       F+  
Sbjct: 182 QPDKGFEVLRMMYQDGFFPDRFTFVGLLGTCNSRDDLKRGELLHCQTIKLKLNSTAFIGN 241

Query: 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV- 452
            ++ MY+K   +++AE  F+    +D  SWN  I         EKALEAF+ ML+E  V 
Sbjct: 242 LIITMYSKLNLLEEAEKAFRSIEEKDLISWNTFISSCSHCNDHEKALEAFKEMLNECRVR 301

Query: 453 PDEITFVVVLSACSHMGLIEEGKK 476
           PDE TF   L+ACS +  +  GK+
Sbjct: 302 PDEFTFASALAACSGLASMCNGKQ 325



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 157/331 (47%), Gaps = 23/331 (6%)

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKD 318
           ++  CS    +  G  LHA  IK +   + +V   ++++Y K   L +A   FD ++ ++
Sbjct: 9   LIHQCSKTKALRQGLPLHAIAIKTATRSDVIVSNHILNLYAKCRKLREARQVFDEMSERN 68

Query: 319 LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHS 378
           L +++A+I+ Y Q GE   AL  F K+    I  NE+  AS ++ C+ +  L  G+ +H 
Sbjct: 69  LVSWSAMISGYEQIGEPISALGLFSKLN---IVPNEYVYASVISACASLKGLVQGKQIHG 125

Query: 379 IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEK 438
            A+K G     FVS AL+ MY KCG   DA   +  +   +  ++N +I G+V++   +K
Sbjct: 126 QALKFGLDSVSFVSNALITMYMKCGKCSDALLAYNEALELNPVAYNALITGFVENQQPDK 185

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK-KHFSSIKKIYGITPTIKHFACM 497
             E  RMM  +G+ PD  TFV +L  C+    ++ G+  H  +IK     T  I +   +
Sbjct: 186 GFEVLRMMYQDGFFPDRFTFVGLLGTCNSRDDLKRGELLHCQTIKLKLNSTAFIGNL--I 243

Query: 498 IDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKME 557
           I +  +     E E      +   + + W   + +CS H N      D EK LE      
Sbjct: 244 ITMYSKLNLLEEAEKAFRSIE-EKDLISWNTFISSCS-HCN------DHEKALE------ 289

Query: 558 SNYVFPSDISATQGRWNDFSGVRALLSSQGI 588
               F   ++  + R ++F+   AL +  G+
Sbjct: 290 ---AFKEMLNECRVRPDEFTFASALAACSGL 317



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 120/263 (45%), Gaps = 5/263 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLK 59
           +E A++ F+S+ E +++SWN  ++  +   D +K +  F  M  +   +  +F+ ++ L 
Sbjct: 253 LEEAEKAFRSIEEKDLISWNTFISSCSHCNDHEKALEAFKEMLNECRVRPDEFTFASALA 312

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             +    +  G+ +H   IR     D     +L++MY+KCG    A  +F +++  ++V+
Sbjct: 313 ACSGLASMCNGKQIHGHLIRTRLYQDVGAGNALINMYAKCGCIAKAYYIFSKMEHQNLVS 372

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG-ESIHAVI 178
           W  +I      G   +A ++F  M+   VKP+      L+ A+   G    G    +++ 
Sbjct: 373 WNTMIAGFGNHGFGGKAFELFAKMKTMGVKPDSVTFVGLLTASNHAGLVDEGLVYFNSME 432

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH-QDSVSWNALFSRFQDYESPDQG 237
             YG   +    + L+ +    GR++      +      D+V   +L S  + +   D G
Sbjct: 433 ETYGISPEIEHFSCLIDLLGRAGRLNEAKEYMKKFPFGHDTVVLGSLLSACRLHGDVDTG 492

Query: 238 LRIFYQMLLKGFKPNMCTFIVIL 260
            + F + LLK  +P   +  V+L
Sbjct: 493 -KCFARQLLK-LQPATTSPYVLL 513



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 69/127 (54%), Gaps = 4/127 (3%)

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
           + S ++ CS    L  G  LH+IA+KT    D+ VS  ++ +YAKC  + +A  VF   +
Sbjct: 6   VGSLIHQCSKTKALRQGLPLHAIAIKTATRSDVIVSNHILNLYAKCRKLREARQVFDEMS 65

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM-GLIEEGK 475
            R+  SW+ MI GY + G    AL  F  +     VP+E  +  V+SAC+ + GL++  +
Sbjct: 66  ERNLVSWSAMISGYEQIGEPISALGLFSKL---NIVPNEYVYASVISACASLKGLVQGKQ 122

Query: 476 KHFSSIK 482
            H  ++K
Sbjct: 123 IHGQALK 129


>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g15510, chloroplastic; Flags: Precursor
 gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
 gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
 gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 866

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 198/596 (33%), Positives = 319/596 (53%), Gaps = 4/596 (0%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLKGFANSG 65
           VF  M E N+ SWN L+ GYA+ G   + M L+  M  +   K   ++   VL+      
Sbjct: 151 VFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIP 210

Query: 66  YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT 125
            +  G+ VH   +R G  LD  +  +L+ MY KCG   +A  +F R+   D+++W A+I+
Sbjct: 211 DLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMIS 270

Query: 126 CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
              + G C E  ++F  MR  SV P+   LTS++ A    GD+R G  IHA +   GF  
Sbjct: 271 GYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAV 330

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           D  V N+L  MY+  G      ++F  +  +D VSW  + S ++    PD+ +  +  M 
Sbjct: 331 DISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMD 390

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
               KP+  T   +L AC++L D+  G +LH   IK  L    +V  +L++MY K  C++
Sbjct: 391 QDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCID 450

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
            A   F ++  K++ ++T+II           AL   R+M++  ++ N  TL + L  C+
Sbjct: 451 KALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQMKMT-LQPNAITLTAALAACA 509

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
            +  L  G+ +H+  ++TG  LD F+  AL+ MY +CG ++ A + F  S  +D  SWN+
Sbjct: 510 RIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQF-NSQKKDVTSWNI 568

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIY 485
           ++ GY + G G   +E F  M+     PDEITF+ +L  CS   ++ +G  +FS ++  Y
Sbjct: 569 LLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKMED-Y 627

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKD 545
           G+TP +KH+AC++D+LGRAG+  E   FI +  +TP+  VW  LL AC  H  I+L E  
Sbjct: 628 GVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGELS 687

Query: 546 AEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           A+ + EL+ K    Y+   ++ A  G+W + + VR ++   G+  +  CSW+EV G
Sbjct: 688 AQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKG 743



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 181/346 (52%), Gaps = 1/346 (0%)

Query: 130 QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
            G  +EA K+ N M+E  V  ++ V  +LVR       Q  G  ++++           +
Sbjct: 72  NGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVEL 131

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML-LKG 248
           GNA ++M++  G +     VF  ++ ++  SWN L   +      D+ + ++++ML + G
Sbjct: 132 GNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGG 191

Query: 249 FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
            KP++ TF  +L+ C  + D+  GK++H H +++  + +  V  +L+ MY K G ++ A 
Sbjct: 192 VKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSAR 251

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
           + FD +  +D+ ++ A+I+ Y + G     L+ F  MR   +  +  TL S ++ C  + 
Sbjct: 252 LLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLG 311

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
               GR +H+  + TG  +D+ V  +L  MY   GS  +AE +F     +D  SW  MI 
Sbjct: 312 DRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMIS 371

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
           GY  + L +KA++ +RMM  +   PDEIT   VLSAC+ +G ++ G
Sbjct: 372 GYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTG 417



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 136/550 (24%), Positives = 260/550 (47%), Gaps = 20/550 (3%)

Query: 23  LNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGC 82
           L+G   +G  ++ M L  SM+++     +     +++        + G  V+++A+    
Sbjct: 66  LHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMS 125

Query: 83  ALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFN- 141
           +L   L  + + M+ + G   +A  VF ++ + ++ +W  ++    +QG   EA  +++ 
Sbjct: 126 SLGVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHR 185

Query: 142 LMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENG 201
           ++    VKP+ +    ++R      D   G+ +H  + +YG+E D  V NAL++MY++ G
Sbjct: 186 MLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCG 245

Query: 202 RVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILK 261
            V     +F+ +  +D +SWNA+ S + +     +GL +F+ M      P++ T   ++ 
Sbjct: 246 DVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVIS 305

Query: 262 ACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFA 321
           AC  L D   G+ +HA+ I      +  V  SL  MY  +G   +A   F  +  KD+ +
Sbjct: 306 ACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVS 365

Query: 322 YTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAV 381
           +T +I+ Y      + A+  +R M  + +K +E T+A+ L+ C+ +  L  G  LH +A+
Sbjct: 366 WTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAI 425

Query: 382 KTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALE 441
           K   +  + V+  L+ MY+KC  ID A  +F     ++  SW  +I G     L  +  E
Sbjct: 426 KARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGL---RLNNRCFE 482

Query: 442 A--FRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMI 498
           A  F   +     P+ IT    L+AC+ +G +  GK+ H   ++   G+   + +   ++
Sbjct: 483 ALIFLRQMKMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPN--ALL 540

Query: 499 DILGRAGKF-TEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKME 557
           D+  R G+  T    F ++ K   +   W  LL   S  G           ++EL  +M 
Sbjct: 541 DMYVRCGRMNTAWSQFNSQKK---DVTSWNILLTGYSERGQ-------GSMVVELFDRMV 590

Query: 558 SNYVFPSDIS 567
            + V P +I+
Sbjct: 591 KSRVRPDEIT 600



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/438 (25%), Positives = 212/438 (48%), Gaps = 6/438 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F  MP  +++SWNA+++GY E+G   + + LF +M+ +       +L++V+     
Sbjct: 250 ARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACEL 309

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G  + G+ +HA  I  G A+D  +  SL  MY   G    A K+F R++  D+V+W  +
Sbjct: 310 LGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTM 369

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+  +      +A   + +M + SVKP++  + +++ A    GD   G  +H +  K   
Sbjct: 370 ISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARL 429

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            S  +V N L++MY +   +     +F  I  ++ +SW ++ +  +      + L IF +
Sbjct: 430 ISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEAL-IFLR 488

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
            +    +PN  T    L AC+ +  +  GK++HAH ++  +  +  +  +L+DMY + G 
Sbjct: 489 QMKMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGR 548

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +  A   F+S   KD+ ++  ++T Y++ G+  M ++ F +M    ++ +E T  S L G
Sbjct: 549 MNTAWSQFNS-QKKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCG 607

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA-VFKGSALRDTAS 422
           CS    +  G +  S     G   ++     +V +  + G + +A   + K     D A 
Sbjct: 608 CSKSQMVRQGLMYFSKMEDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAV 667

Query: 423 WNMMIGGYVKH---GLGE 437
           W  ++     H    LGE
Sbjct: 668 WGALLNACRIHHKIDLGE 685


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 194/598 (32%), Positives = 332/598 (55%), Gaps = 10/598 (1%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKK---FSKFSLSTVLKGFAN 63
           VF  +P+ N +SW+A + G  ++    + + LF   K+M++K    S+ + ++V +  A 
Sbjct: 214 VFSELPDKNWISWSAAIAGCVQNDQLLRGLKLF---KEMQRKGIGVSQSTYASVFRSCAG 270

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
               + G  +H  A++     D  +  + +DMY+KC    +A K+F  + D ++ ++ A+
Sbjct: 271 LSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAM 330

Query: 124 IT--CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           I     ++QG   +A K+F  ++++S   ++  L+  + A         G  +H +  K 
Sbjct: 331 IIGYARNEQGF--QAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKS 388

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
              S+  V NA++ MY + G +   S +F+ +  +D VSWNA+ +  +  ES  + L  F
Sbjct: 389 NLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTLSHF 448

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
             ML    +P+  T+  +LKAC+       G ++H   IK  +     VG++LVDMY K 
Sbjct: 449 GAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKC 508

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G +E+A      L  + + ++ AII+ ++   ++E + + F  M   G++ + FT A+ L
Sbjct: 509 GMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVL 568

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           + C+ +AT+  G+ +H+  +K   L D+++++ LV MY+KCG++ D+  +F+ +  RD+ 
Sbjct: 569 DTCANLATVGLGKQIHAQMIKLELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAPKRDSV 628

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           +WN MI G+  HGLGE+ALE F  ML E   P+  TFV VL ACSH+G  ++G  +F  +
Sbjct: 629 TWNAMICGFAYHGLGEEALELFEHMLHENIKPNHATFVSVLRACSHVGNAKKGLFYFQKM 688

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
             IY + P ++H++CM+DILGR+G+  E    I +     +A++W  LL  C   GN+E+
Sbjct: 689 ASIYALEPQLEHYSCMVDILGRSGQVEEALRLIQDMPFEADAIIWRTLLSICKIQGNVEV 748

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            EK A  LL+L+P+  S Y   S+I A  G W   S +R  + S  +KKEP CSWIEV
Sbjct: 749 AEKAASSLLKLDPEDSSAYTLLSNIYADAGMWQQVSKIRQTMRSHNLKKEPGCSWIEV 806



 Score =  241 bits (616), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 155/540 (28%), Positives = 264/540 (48%), Gaps = 7/540 (1%)

Query: 1   MELAKRVFKSMPEL-NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           MELA+ VF SMP   +VVSWN+L++GY ++GD QK + +F  M+D+   F   +L+  LK
Sbjct: 106 MELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVFLKMRDLGVMFDHTTLAVSLK 165

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             +       G  +H +A+++G   D     +LVDMY+KC   +++L VF  + D + ++
Sbjct: 166 ICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKCNSLEDSLDVFSELPDKNWIS 225

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W A I    Q        K+F  M+   +  +Q    S+ R+       R G  +H    
Sbjct: 226 WSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCAGLSASRLGTQLHCHAL 285

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K  F SD +VG A + MY +   +S   ++F  +   +  S+NA+   +   E   Q  +
Sbjct: 286 KTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFK 345

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F Q+    F  +  +    L A + +     G QLH   IK +L  N  V  +++DMY 
Sbjct: 346 LFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNICVANAILDMYG 405

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G L +A   FD +  +D  ++ AIIT+  Q       L  F  M    ++ +EFT  S
Sbjct: 406 KCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGS 465

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L  C+     +NG  +H   +K+G  L MFV +ALV MY+KCG +++AE +      + 
Sbjct: 466 VLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLEEQT 525

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SWN +I G+      E +   F  ML+ G  PD  T+  VL  C+++  +  GK+  +
Sbjct: 526 MVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQIHA 585

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTP--NALVWENLLGACSWHG 537
            + K+  +   +   + ++D+  + G    + + +   +  P  +++ W  ++   ++HG
Sbjct: 586 QMIKL-ELLSDVYITSTLVDMYSKCGN---MHDSLLMFRKAPKRDSVTWNAMICGFAYHG 641



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 139/484 (28%), Positives = 224/484 (46%), Gaps = 33/484 (6%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A ++F  +P+ N+ S+NA++ GYA +  G +   LF  ++     F + SLS  L  
Sbjct: 309 MSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSA 368

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A       G  +H +AI+   + +  ++ +++DMY KCG    A  +F  ++  D V+W
Sbjct: 369 AAVIKGHSEGLQLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSW 428

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            AIIT  +Q     +    F  M  S ++P++F   S+++A         G  +H  I K
Sbjct: 429 NAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIK 488

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G      VG+ALV MY + G +    ++   +  Q  VSWNA+ S F   +  +   R 
Sbjct: 489 SGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRF 548

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  ML  G +P+  T+  +L  C++L+ VG GKQ+HA  IK  L  +  + ++LVDMY K
Sbjct: 549 FSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQIHAQMIKLELLSDVYITSTLVDMYSK 608

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G + D+ + F     +D   + A+I  +A  G  E AL+ F  M  E IK N  T  S 
Sbjct: 609 CGNMHDSLLMFRKAPKRDSVTWNAMICGFAYHGLGEEALELFEHMLHENIKPNHATFVSV 668

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L  CS V     G               +F    + ++YA    ++              
Sbjct: 669 LRACSHVGNAKKG---------------LFYFQKMASIYALEPQLE-------------- 699

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
             ++ M+    + G  E   EA R++ D  +  D I +  +LS C   G +E  +K  SS
Sbjct: 700 -HYSCMVDILGRSGQVE---EALRLIQDMPFEADAIIWRTLLSICKIQGNVEVAEKAASS 755

Query: 481 IKKI 484
           + K+
Sbjct: 756 LLKL 759



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 141/543 (25%), Positives = 248/543 (45%), Gaps = 50/543 (9%)

Query: 53  SLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI 112
           + S + +  +N   +K G+  HA  I  G     F++  L+ MY KC   + A KVF  +
Sbjct: 26  TFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEM 85

Query: 113 KDP--------------------------------DVVAWGAIITCLDQQGCCQEAAKIF 140
                                              DVV+W ++I+   Q G  Q++  +F
Sbjct: 86  PQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVF 145

Query: 141 NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMEN 200
             MR+  V  +   L   ++  +   DQ  G  IH +  + GF+ D + G+ALV MY + 
Sbjct: 146 LKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKC 205

Query: 201 GRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVIL 260
             +     VF  +  ++ +SW+A  +     +   +GL++F +M  KG   +  T+  + 
Sbjct: 206 NSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVF 265

Query: 261 KACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLF 320
           ++C+ LS    G QLH H +K     + +VGT+ +DMY K   + DA   F  L + +L 
Sbjct: 266 RSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQ 325

Query: 321 AYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIA 380
           +Y A+I  YA+  +   A K F +++      +E +L+  L+  + +   + G  LH +A
Sbjct: 326 SYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLA 385

Query: 381 VKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKAL 440
           +K+    ++ V+ A++ MY KCG++ +A  +F    +RD  SWN +I    ++    K L
Sbjct: 386 IKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTL 445

Query: 441 EAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT----IKHF-- 494
             F  ML     PDE T+  VL AC+       G++ FS+  +++G        +K F  
Sbjct: 446 SHFGAMLRSKMEPDEFTYGSVLKACA-------GQRAFSNGMEVHGRIIKSGMGLKMFVG 498

Query: 495 ACMIDILGRAGKFTEIENFITETKLTPNALV-WENLLGACSWHGNIELDEKDAEKLLEL- 552
           + ++D+  + G   E E      +L    +V W  ++   S     E  ++    +LE+ 
Sbjct: 499 SALVDMYSKCGMMEEAEKI--HYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMG 556

Query: 553 -EP 554
            EP
Sbjct: 557 VEP 559


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 181/590 (30%), Positives = 325/590 (55%), Gaps = 1/590 (0%)

Query: 11  MPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAG 70
           M + + VSWN++++ +   G   + + LF  M+++    + ++    L+G  +  ++K G
Sbjct: 208 MEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLG 267

Query: 71  QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
             +H  A++     D +++ +L+ MY+KCG  ++A +VF  +   D V+W  +++ L Q 
Sbjct: 268 MGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQN 327

Query: 131 GCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVG 190
              ++A   F  M+ S+ KP+Q  + +L+ A+  +G+   G+ +HA   + G +S+  +G
Sbjct: 328 ELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIG 387

Query: 191 NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFK 250
           N L+ MY +   V +    FE +  +D +SW  + + +   E   + + +F ++ +KG  
Sbjct: 388 NTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMD 447

Query: 251 PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVA 310
            +      +L+ACS L    F +++H +  K  L  + ++  ++V++Y + G  + A  A
Sbjct: 448 VDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDL-ADIMLQNAIVNVYGEVGHRDYARRA 506

Query: 311 FDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATL 370
           F+S+ +KD+ ++T++IT     G    AL+ F  ++   I+ +   + S L+  + +++L
Sbjct: 507 FESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSL 566

Query: 371 ANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGY 430
             G+ +H   ++ G  L+  ++++LV MYA CG+++++  +F     RD   W  MI   
Sbjct: 567 KKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINAN 626

Query: 431 VKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT 490
             HG G +A+  F+ M DE  +PD ITF+ +L ACSH GL+ EGK+ F  +K  Y + P 
Sbjct: 627 GMHGCGNEAIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPW 686

Query: 491 IKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLL 550
            +H+ACM+D+L R+    E   F+    + P++ VW  LLGAC  H N EL E  A++LL
Sbjct: 687 PEHYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGACHIHSNKELGELAAKELL 746

Query: 551 ELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           + + K    Y   S+I A  GRWND   VR  +   G+KK P CSWIEVD
Sbjct: 747 QSDTKNSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVD 796



 Score =  238 bits (606), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 159/567 (28%), Positives = 268/567 (47%), Gaps = 14/567 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A +VF  M E  + +WNA++  +  SG   + + L+  M+ +       +  +VLK    
Sbjct: 98  AVKVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGA 157

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI--KDPDVVAWG 121
            G  + G  +H +A++ G     F+  +L+ MY KCG    A  +F  I  +  D V+W 
Sbjct: 158 LGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWN 217

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           +II+    +G C EA  +F  M+E  V  N +   + ++   +    + G  IH    K 
Sbjct: 218 SIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKS 277

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
              +D  V NAL++MY + GR+    RVF ++  +D VSWN L S     E     L  F
Sbjct: 278 NHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYF 337

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
             M     KP+  + + ++ A     ++  GK++HA+ I++ LD N  +G +L+DMY K 
Sbjct: 338 RDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKC 397

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
            C++  G AF+ +  KDL ++T II  YAQ      A+  FRK++++G+  +   + S L
Sbjct: 398 CCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVL 457

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
             CS + +    R +H    K   L D+ +  A+V +Y + G  D A   F+    +D  
Sbjct: 458 RACSGLKSRNFIREIHGYVFKRD-LADIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIV 516

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSS 480
           SW  MI   V +GL  +ALE F  +      PD I  +  LSA +++  +++GK+ H   
Sbjct: 517 SWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFL 576

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           I+K + +   I   + ++D+    G            K   + ++W +++ A   HG   
Sbjct: 577 IRKGFFLEGPIA--SSLVDMYACCGTVENSRKMFHSVK-QRDLILWTSMINANGMHGC-- 631

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDIS 567
                  + + L  KM    V P  I+
Sbjct: 632 -----GNEAIALFKKMTDENVIPDHIT 653



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 120/445 (26%), Positives = 218/445 (48%), Gaps = 8/445 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A+RVF SM   + VSWN LL+G  ++   +  ++ F  M++  +K  + S+  ++  
Sbjct: 299 MEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAA 358

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              SG +  G+ VHA AIR G   +  +  +L+DMY+KC    +    F  + + D+++W
Sbjct: 359 SGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISW 418

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             II    Q  C  EA  +F  ++   +  +  ++ S++RA +    +     IH  + K
Sbjct: 419 TTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFK 478

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
               +D ++ NA+V++Y E G   Y  R FE+I  +D VSW ++ +       P + L +
Sbjct: 479 RDL-ADIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALEL 537

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           FY +     +P+    I  L A ++LS +  GK++H   I+        + +SLVDMY  
Sbjct: 538 FYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYAC 597

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +E++   F S+  +DL  +T++I +    G    A+  F+KM  E +  +  T  + 
Sbjct: 598 CGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLAL 657

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVS--TALVAMYAKCGSIDDAEAVFKGSALR 418
           L  CS    +  G+    I +K G+ L+ +      +V + ++  S+++A    +   ++
Sbjct: 658 LYACSHSGLMVEGKRFFEI-MKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRSMPIK 716

Query: 419 DTAS-WNMMIGGYVKHG---LGEKA 439
            ++  W  ++G    H    LGE A
Sbjct: 717 PSSEVWCALLGACHIHSNKELGELA 741



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/422 (27%), Positives = 198/422 (46%), Gaps = 11/422 (2%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +  GQ +HA  ++    L  FL+  L+ MY KCG   +A+KVF  + +  +  W A++  
Sbjct: 62  LPQGQQLHARLLK--SHLSAFLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGA 119

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
               G   EA +++  MR   V  +     S+++A    G+ R G  IH V  K GF   
Sbjct: 120 FVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEF 179

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAI--AHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
             V NAL++MY + G +     +F+ I    +D+VSWN++ S         + L +F +M
Sbjct: 180 VFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRM 239

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
              G   N  TF+  L+     S V  G  +H   +K +   +  V  +L+ MY K G +
Sbjct: 240 QEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRM 299

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
           EDA   F S+  +D  ++  +++   Q      AL  FR M+    K ++ ++ + +   
Sbjct: 300 EDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAAS 359

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
                L NG+ +H+ A++ G   +M +   L+ MYAKC  +      F+    +D  SW 
Sbjct: 360 GRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWT 419

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
            +I GY ++    +A+  FR +  +G   D +    VL ACS       G K  + I++I
Sbjct: 420 TIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACS-------GLKSRNFIREI 472

Query: 485 YG 486
           +G
Sbjct: 473 HG 474



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 135/281 (48%), Gaps = 18/281 (6%)

Query: 258 VILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK 317
           ++L  C ++  +  G+QLHA  +K  L     + T L+ MY+K G L+DA   FD +  +
Sbjct: 51  LLLDLCVAVKALPQGQQLHARLLKSHLSA--FLATKLLHMYEKCGSLKDAVKVFDEMTER 108

Query: 318 DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLH 377
            +F + A++ ++  +G+   A++ +++MR+ G+  +  T  S L  C  +     G  +H
Sbjct: 109 TIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIH 168

Query: 378 SIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL--RDTASWNMMIGGYVKHGL 435
            +AVK G    +FV  AL+AMY KCG +  A  +F G  +   DT SWN +I  +V  G 
Sbjct: 169 GVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGK 228

Query: 436 GEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFA 495
             +AL  FR M + G   +  TFV  L        ++ G         I+G      HFA
Sbjct: 229 CLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLG-------MGIHGAALKSNHFA 281

Query: 496 ------CMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
                  +I +  + G+  + E  +  + L  + + W  LL
Sbjct: 282 DVYVANALIAMYAKCGRMEDAER-VFASMLCRDYVSWNTLL 321


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 203/601 (33%), Positives = 327/601 (54%), Gaps = 16/601 (2%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           +F+ M E ++VSWNA +   A+SGD    + LF  M+    + ++ +L   L   A    
Sbjct: 185 LFERM-ERDLVSWNAAIAANAQSGDLDMALELFQRMQLEGVRPARITLVITLSVCAK--- 240

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           I+  + +H++    G      +S +L   Y++ G  D A +VF R  + DVV+W A++  
Sbjct: 241 IRQARAIHSIVRESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGA 300

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             Q G   EAA +F  M    + P++    +LV A+T     R G  IHA   + G + D
Sbjct: 301 YAQHGHMSEAALLFARMLHEGIPPSK---VTLVNASTGCSSLRFGRMIHACALEKGLDRD 357

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
            ++GNAL+ MY   G       +FE I   ++VSWN + +         + L +F +M L
Sbjct: 358 IVLGNALLDMYTRCGSPEEARHLFEGIP-GNAVSWNTMIAGSSQKGQMKRALELFQRMQL 416

Query: 247 KGFKPNMCTFIVILKACSSLSD----VGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +G  P   T++ +L+A +S  +    +  G++LH+  +         +GT++V MY   G
Sbjct: 417 EGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCG 476

Query: 303 CLEDAGVAFDSLA---NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
            +++A  +F   A     D+ ++ AII+S +Q G  + AL  FR+M L G+  N+ T  +
Sbjct: 477 AIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVA 536

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL-R 418
            L+ C+  A L  G ++H     +G   ++FV+TAL +MY +CGS++ A  +F+  A+ R
Sbjct: 537 VLDACAGAAALTEGVIVHDHLRHSGMESNVFVATALASMYGRCGSLESAREIFEKVAVER 596

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D   +N MI  Y ++GL  +AL+ F  M  EG  PDE +FV VLSACSH GL +EG + F
Sbjct: 597 DVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIF 656

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            S+++ YGI P+  H+AC +D+LGRAG   + E  I    + P  LVW+ LLGAC  + +
Sbjct: 657 RSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRD 716

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           ++        + EL+P  ES YV  S+I A  G+W++ + VR  + S+G++K+   SWIE
Sbjct: 717 VDRGRLANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVRTEMESRGLRKQAGKSWIE 776

Query: 599 V 599
           +
Sbjct: 777 I 777



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 150/540 (27%), Positives = 259/540 (47%), Gaps = 16/540 (2%)

Query: 5   KRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANS 64
           + VF  +   +  SW  ++  Y E G  ++ + +F  M+    +    +   VLK  A  
Sbjct: 82  EEVFSRLEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARL 141

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
           G +  G+ +HA  +  G      L+  L+ +Y  CG   +A+ +F R+ + D+V+W A I
Sbjct: 142 GDLSQGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERM-ERDLVSWNAAI 200

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
               Q G    A ++F  M+   V+P +  L   +    +    R   +IH+++ + G E
Sbjct: 201 AANAQSGDLDMALELFQRMQLEGVRPARITLVITLSVCAKI---RQARAIHSIVRESGLE 257

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
              +V  AL S Y   G +     VF+  A +D VSWNA+   +  +    +   +F +M
Sbjct: 258 QTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARM 317

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
           L +G  P+  T +     CSSL    FG+ +HA  ++  LD + V+G +L+DMY + G  
Sbjct: 318 LHEGIPPSKVTLVNASTGCSSLR---FGRMIHACALEKGLDRDIVLGNALLDMYTRCGSP 374

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
           E+A   F+ +   +  ++  +I   +Q G+ + AL+ F++M+LEG+     T  + L   
Sbjct: 375 EEARHLFEGIPG-NAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAV 433

Query: 365 SP----VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL--- 417
           +        +A GR LHS  V  G+  +  + TA+V MYA CG+ID+A A F+  A+   
Sbjct: 434 ASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDR 493

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
            D  SWN +I    +HG G++AL  FR M   G  P++IT V VL AC+    + EG   
Sbjct: 494 HDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIV 553

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
              ++   G+   +     +  + GR G          +  +  + +++  ++ A S +G
Sbjct: 554 HDHLRH-SGMESNVFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNG 612



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 144/521 (27%), Positives = 252/521 (48%), Gaps = 26/521 (4%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
           L  +L+   +   +  G+ +HA  + LG  L++ L   L+ +Y KC    +  +VF R++
Sbjct: 32  LVRLLRAAGDDRLLSQGRRIHARIVSLG--LEEELGNHLLRLYLKCESLGDVEEVFSRLE 89

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES 173
             D  +W  IIT   + G  + A  +F+ M++  V+ +     ++++A    GD   G S
Sbjct: 90  VRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRS 149

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           IHA I + G E  +++ N L+ +Y   G V+    +FE +  +D VSWNA  +       
Sbjct: 150 IHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERM-ERDLVSWNAAIAANAQSGD 208

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
            D  L +F +M L+G +P   T ++ L  C+ +      + +H+   +  L+   VV T+
Sbjct: 209 LDMALELFQRMQLEGVRPARITLVITLSVCAKIRQ---ARAIHSIVRESGLEQTLVVSTA 265

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           L   Y + G L+ A   FD  A +D+ ++ A++ +YAQ G    A   F +M  EGI  +
Sbjct: 266 LASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPS 325

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
           + TL +   GCS   +L  GR++H+ A++ G   D+ +  AL+ MY +CGS ++A  +F+
Sbjct: 326 KVTLVNASTGCS---SLRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFE 382

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS----HMG 469
           G    +  SWN MI G  + G  ++ALE F+ M  EG  P   T++ +L A +       
Sbjct: 383 GIP-GNAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEAR 441

Query: 470 LIEEGKKHFSSIKKI-YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTP--NALVW 526
            + EG+K  S I    Y   P I     ++ +    G   E         +    + + W
Sbjct: 442 AMAEGRKLHSRIVSCGYASEPAIG--TAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSW 499

Query: 527 ENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
             ++ + S HG+        ++ L    +M+ + V P+ I+
Sbjct: 500 NAIISSLSQHGH-------GKRALGFFRRMDLHGVAPNQIT 533



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 137/479 (28%), Positives = 226/479 (47%), Gaps = 31/479 (6%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ AK VF    E +VVSWNA+L  YA+ G   +   LF  M       SK +L     G
Sbjct: 276 LDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVNASTG 335

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ++   ++ G+++HA A+  G   D  L  +L+DMY++CG  + A  +F  I   + V+W
Sbjct: 336 CSS---LRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFEGIPG-NAVSW 391

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC----GESIHA 176
             +I    Q+G  + A ++F  M+   + P +    +L+ A     ++      G  +H+
Sbjct: 392 NTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHS 451

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDS---VSWNALFSRFQDYES 233
            I   G+ S+  +G A+V MY   G +   +  F+  A +D    VSWNA+ S    +  
Sbjct: 452 RIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGH 511

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
             + L  F +M L G  PN  T + +L AC+  + +  G  +H H     ++ N  V T+
Sbjct: 512 GKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDHLRHSGMESNVFVATA 571

Query: 294 LVDMYDKSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           L  MY + G LE A   F+ +A  +D+  + A+I +Y+Q G A  ALK F +M+ EG + 
Sbjct: 572 LASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRP 631

Query: 353 NEFTLASCLNGCSPVATLANG-------RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSI 405
           +E +  S L+ CS       G       R  + IA    H          V +  + G +
Sbjct: 632 DEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHY------ACAVDVLGRAGWL 685

Query: 406 DDAEAVFKGSALRDTA-SWNMMIGGYVKHGLGEKALEAFRMM--LDEGYVPDEITFVVV 461
            DAE + +   ++ T   W  ++G   K+   ++   A  M+  LD G   DE  +VV+
Sbjct: 686 ADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPG---DESAYVVL 741


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 190/554 (34%), Positives = 304/554 (54%), Gaps = 18/554 (3%)

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP-- 115
           L+  A+   +  G+ +H++ I  G +       SL++MYSKCG    A+ VFY   DP  
Sbjct: 18  LQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFY---DPCH 74

Query: 116 --DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES 173
             +V A+ AII+     G   +  + +  MR   V P+++    +VR   E  + +    
Sbjct: 75  ERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEVK---K 131

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           IH  + K G E D  VG+ALV+ Y++NG +    +VF  ++ +D V WNA+ + +     
Sbjct: 132 IHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGC 191

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
            D+ L +F +M +KG  P+  T   IL   +S  D+  GK +H   +K   D    V  +
Sbjct: 192 LDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSVSNA 251

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           L+DMY K   + DA + F+ +  KD+F++ +II+ + Q G+ +  L+ F KM   GI  +
Sbjct: 252 LIDMYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPD 311

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAV--------KTGHLLDMFVSTALVAMYAKCGSI 405
             T+ + L  CS +A L +GR +H   +        + G + ++ VS A++ MYAKCGS+
Sbjct: 312 LVTITTVLPACSHLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSM 371

Query: 406 DDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC 465
           ++A  +F   + +D ASWN+MI GY  HG   +AL  F  M +  + P+E+T V VLSAC
Sbjct: 372 NNALKIFDSMSKKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNEVTLVGVLSAC 431

Query: 466 SHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV 525
           +H G +  G+   + ++  +G+ PTI+H+ C+ID+LGRAG   +    + +  +  N +V
Sbjct: 432 NHAGFVSHGRLFLAQMESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQKMPIQANPVV 491

Query: 526 WENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSS 585
           W  LLGAC  HGN EL E  A ++L+LEP+   +YV  S++    GR+ +   VR  +  
Sbjct: 492 WRALLGACRLHGNAELAEIAARQVLQLEPEHCGSYVLMSNVYGVIGRYEEVLEVRKTMKE 551

Query: 586 QGIKKEPSCSWIEV 599
           Q +KK P CSWIE+
Sbjct: 552 QNVKKTPGCSWIEL 565



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/382 (27%), Positives = 186/382 (48%), Gaps = 27/382 (7%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A++VF  +   +VV WNA++NGYA+ G   + + +F  M       S+F+++ +L  
Sbjct: 161 MEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSV 220

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           FA+ G +  G+ VH + +++G      +S +L+DMY KC    +AL +F  I + D+ +W
Sbjct: 221 FASRGDLDNGKTVHGIVMKMGYDSGVSVSNALIDMYGKCKHIGDALIIFEMINEKDIFSW 280

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +II+  +Q G      ++F+ M  S + P+   +T+++ A +       G  IH  +  
Sbjct: 281 NSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGREIHGYMII 340

Query: 181 YGFESD--------TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
            G   D         LV NA++ MY + G ++   ++F++++ +D  SWN +   +  + 
Sbjct: 341 NGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSMSKKDVASWNIMIMGYGMHG 400

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAH---------TIKHS 283
              + L +F QM    FKPN  T + +L AC+    V  G+   A          TI+H 
Sbjct: 401 YALEALGMFSQMCEAEFKPNEVTLVGVLSACNHAGFVSHGRLFLAQMESTFGVIPTIEHY 460

Query: 284 LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCF 342
                   T ++DM  ++G LEDA      +    +   + A++ +    G AE+A    
Sbjct: 461 --------TCVIDMLGRAGHLEDAYEIVQKMPIQANPVVWRALLGACRLHGNAELAEIAA 512

Query: 343 RK-MRLEGIKSNEFTLASCLNG 363
           R+ ++LE      + L S + G
Sbjct: 513 RQVLQLEPEHCGSYVLMSNVYG 534



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 159/324 (49%), Gaps = 23/324 (7%)

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF 311
           N+   +  L++C+   ++  GKQLH+  I +    +    TSL++MY K G + +A + F
Sbjct: 10  NVTKCVAFLQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVF 69

Query: 312 -DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATL 370
            D    +++FAY AII+ +   G A    + ++KMRLEG+  +++T    +  C  V  +
Sbjct: 70  YDPCHERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEV 129

Query: 371 ANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGY 430
              + +H   +K G  LD+FV +ALV  Y K GS++DA+ VF   ++RD   WN MI GY
Sbjct: 130 ---KKIHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGY 186

Query: 431 VKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT 490
            K G  ++ALE FR M  +G  P   T   +LS  +  G ++ GK     + K+ G    
Sbjct: 187 AKIGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKM-GYDSG 245

Query: 491 IKHFACMIDILGRA---GKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEK--D 545
           +     +ID+ G+    G    I   I E  +              SW+  I + E+  D
Sbjct: 246 VSVSNALIDMYGKCKHIGDALIIFEMINEKDIF-------------SWNSIISVHEQCGD 292

Query: 546 AEKLLELEPKMESNYVFPSDISAT 569
            +  L L  KM  + + P  ++ T
Sbjct: 293 HDGTLRLFDKMLGSGILPDLVTIT 316


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 180/590 (30%), Positives = 325/590 (55%), Gaps = 1/590 (0%)

Query: 11  MPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAG 70
           M + + VSWN++++ +   G+  + + LF  M+++    + ++    L+G  +  ++K G
Sbjct: 208 MEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLG 267

Query: 71  QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
             +H   ++     D +++ +L+ MY+KCG  ++A +VF  +   D V+W  +++ L Q 
Sbjct: 268 MGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQN 327

Query: 131 GCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVG 190
               +A   F  M+ S  KP+Q  + +L+ A+  +G+   G+ +HA   + G +S+  +G
Sbjct: 328 ELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIG 387

Query: 191 NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFK 250
           N LV MY +   V Y    FE +  +D +SW  + + +   E   + + +F ++ +KG  
Sbjct: 388 NTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMD 447

Query: 251 PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVA 310
            +      +L+ACS L    F +++H +  K  L  + ++  ++V++Y + G ++ A  A
Sbjct: 448 VDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDL-ADIMLQNAIVNVYGEVGHIDYARRA 506

Query: 311 FDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATL 370
           F+S+ +KD+ ++T++IT     G    AL+ F  ++   I+ +   + S L+  + +++L
Sbjct: 507 FESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSL 566

Query: 371 ANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGY 430
             G+ +H   ++ G  L+  ++++LV MYA CG+++++  +F     RD   W  MI   
Sbjct: 567 KKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINAN 626

Query: 431 VKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT 490
             HG G KA+  F+ M D+  +PD ITF+ +L ACSH GL+ EGK+ F  +K  Y + P 
Sbjct: 627 GMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPW 686

Query: 491 IKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLL 550
            +H+ACM+D+L R+    E  +F+    + P++ +W  LLGAC  H N EL E  A++LL
Sbjct: 687 PEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELGELAAKELL 746

Query: 551 ELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           + + +    Y   S+I A  GRWND   VR  +   G+KK P CSWIEVD
Sbjct: 747 QSDTENSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVD 796



 Score =  249 bits (637), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 166/567 (29%), Positives = 272/567 (47%), Gaps = 14/567 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A +VF  M E  + SWNAL+  +  SG   + + L+  M+ +       +  +VLK    
Sbjct: 98  AVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGA 157

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI--KDPDVVAWG 121
            G  + G  +H +A++ G     F+  +L+ MY KCG    A  +F  I  +  D V+W 
Sbjct: 158 LGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWN 217

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           +II+    +G C EA  +F  M+E  V  N +   + ++   +    + G  IH  + K 
Sbjct: 218 SIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKS 277

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
              +D  V NAL++MY + GR+    RVFE++  +D VSWN L S     E     L  F
Sbjct: 278 NHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYF 337

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
             M   G KP+  + + ++ A     ++  GK++HA+ I++ LD N  +G +LVDMY K 
Sbjct: 338 RDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKC 397

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
            C++  G AF+ +  KDL ++T II  YAQ      A+  FRK++++G+  +   + S L
Sbjct: 398 CCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVL 457

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
             CS + +    R +H    K   L D+ +  A+V +Y + G ID A   F+    +D  
Sbjct: 458 RACSGLKSRNFIREIHGYVFKRD-LADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIV 516

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSS 480
           SW  MI   V +GL  +ALE F  +      PD I  +  LSA +++  +++GK+ H   
Sbjct: 517 SWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFL 576

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           I+K + +   I   + ++D+    G            K   + ++W +++ A   HG   
Sbjct: 577 IRKGFFLEGPIA--SSLVDMYACCGTVENSRKMFHSVK-QRDLILWTSMINANGMHGC-- 631

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDIS 567
                  K + L  KM    V P  I+
Sbjct: 632 -----GNKAIALFKKMTDQNVIPDHIT 653



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 120/422 (28%), Positives = 203/422 (48%), Gaps = 11/422 (2%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +  GQ +HA+ ++    L  FL+  LV MY KCG   +A+KVF  + +  + +W A++  
Sbjct: 62  LPQGQQLHALLLK--SHLSAFLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGA 119

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
               G   EA +++  MR   V  +     S+++A    G+ R G  IH V  K G+   
Sbjct: 120 FVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEF 179

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAI--AHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
             V NAL++MY + G +     +F+ I    +D+VSWN++ S      +  + L +F +M
Sbjct: 180 VFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRM 239

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
              G   N  TF+  L+     S V  G  +H   +K +   +  V  +L+ MY K G +
Sbjct: 240 QEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRM 299

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
           EDAG  F+S+  +D  ++  +++   Q      AL  FR M+  G K ++ ++ + +   
Sbjct: 300 EDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAAS 359

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
                L  G+ +H+ A++ G   +M +   LV MYAKC  +      F+    +D  SW 
Sbjct: 360 GRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWT 419

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
            +I GY ++    +A+  FR +  +G   D +    VL ACS       G K  + I++I
Sbjct: 420 TIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACS-------GLKSRNFIREI 472

Query: 485 YG 486
           +G
Sbjct: 473 HG 474



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 119/445 (26%), Positives = 216/445 (48%), Gaps = 8/445 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A RVF+SM   + VSWN LL+G  ++      ++ F  M++  +K  + S+  ++  
Sbjct: 299 MEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAA 358

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              SG +  G+ VHA AIR G   +  +  +LVDMY+KC         F  + + D+++W
Sbjct: 359 SGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISW 418

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             II    Q     EA  +F  ++   +  +  ++ S++RA +    +     IH  + K
Sbjct: 419 TTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFK 478

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
               +D ++ NA+V++Y E G + Y  R FE+I  +D VSW ++ +       P + L +
Sbjct: 479 RDL-ADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALEL 537

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           FY +     +P+    I  L A ++LS +  GK++H   I+        + +SLVDMY  
Sbjct: 538 FYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYAC 597

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +E++   F S+  +DL  +T++I +    G    A+  F+KM  + +  +  T  + 
Sbjct: 598 CGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLAL 657

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVS--TALVAMYAKCGSIDDAEAVFKGSALR 418
           L  CS    +  G+    I +K G+ L+ +      +V + ++  S+++A    +   ++
Sbjct: 658 LYACSHSGLMVEGKRFFEI-MKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIK 716

Query: 419 DTAS-WNMMIGGYVKHG---LGEKA 439
            ++  W  ++G    H    LGE A
Sbjct: 717 PSSEIWCALLGACHIHSNKELGELA 741



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 134/281 (47%), Gaps = 18/281 (6%)

Query: 258 VILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK 317
           ++L  C +   +  G+QLHA  +K  L     + T LV MY K G L DA   FD ++ +
Sbjct: 51  LLLDLCVAAKALPQGQQLHALLLKSHLSA--FLATKLVLMYGKCGSLRDAVKVFDEMSER 108

Query: 318 DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLH 377
            +F++ A++ ++  +G+   A++ ++ MR+ G+  +  T  S L  C  +     G  +H
Sbjct: 109 TIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIH 168

Query: 378 SIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL--RDTASWNMMIGGYVKHGL 435
            +AVK G+   +FV  AL+AMY KCG +  A  +F G  +   DT SWN +I  +V  G 
Sbjct: 169 GVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGN 228

Query: 436 GEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFA 495
             +AL  FR M + G   +  TFV  L        ++ G         I+G      HFA
Sbjct: 229 CLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLG-------MGIHGAVLKSNHFA 281

Query: 496 ------CMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
                  +I +  + G+  E    + E+ L  + + W  LL
Sbjct: 282 DVYVANALIAMYAKCGRM-EDAGRVFESMLCRDYVSWNTLL 321


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 198/600 (33%), Positives = 325/600 (54%), Gaps = 2/600 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ VF    +   +  NA+L GY +SG  ++ + LF  M+    +    S +  LK 
Sbjct: 80  LEAARYVFDQFFQPKGLLCNAMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKA 139

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+S   + G  + + A+  G   ++F+  S++    K G    A +VF  + + DVV W
Sbjct: 140 CASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCW 199

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +II    Q GC   A ++F  M  S +KP+   +TSL++A    G+ + G+ +H  +  
Sbjct: 200 NSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLG 259

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G  +D LV  + V MY + G +     VF  +  ++ VSWNA+ S         +   +
Sbjct: 260 LGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDL 319

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F++++      ++ T + +L+ CS  + +  GK LH   I+ S + N ++ T++VD+Y K
Sbjct: 320 FHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIR-SFESNLILSTAIVDLYSK 378

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L+ A   F+ + ++++  +TA++   AQ G AE AL+ F +M+ EGI +N  T  S 
Sbjct: 379 CGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSL 438

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK-GSALRD 419
           ++ C+ + +L  GR +H    + G   D+   TALV MYAKCG I+ AE +F  GS  +D
Sbjct: 439 VHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKD 498

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
              WN MI GY  HG G +A+  +  M++EG  P++ TF+ +LSACSH  L+E+G   F+
Sbjct: 499 VVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFN 558

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           S+++ + I P  KH+AC++D+L RAG+F E +  I +    P   V E LL  C  H NI
Sbjct: 559 SMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNI 618

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            L  + ++KLL L+      Y+  S+I A   RW+    +R L+ ++G+KK P  S +E 
Sbjct: 619 NLGIQTSDKLLALDAMNPGIYIMLSNIYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVET 678



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 122/466 (26%), Positives = 236/466 (50%), Gaps = 2/466 (0%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
            HA  I    + D+F++  LV  YS     + A  VF +   P  +   A++    Q G 
Sbjct: 51  THAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQSGR 110

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
            +E  ++F LMR  +++ +    T  ++A   + D   G  I +   + G E +  VG++
Sbjct: 111 YRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVGSS 170

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           ++S  ++ G++    RVF+ + ++D V WN++   +      D   ++F++M   G KP+
Sbjct: 171 MISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPS 230

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
             T   +++AC  + ++  GK +H + +   L  + +V TS VDMY K G +E A   F 
Sbjct: 231 PITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFY 290

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
            +  ++L ++ A+I+   + G    +   F ++       +  T+ S L GCS  A+LA 
Sbjct: 291 KMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLAT 350

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
           G++LH  A+++    ++ +STA+V +Y+KCGS+  A  VF     R+  +W  M+ G  +
Sbjct: 351 GKILHGCAIRSFE-SNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQ 409

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK 492
           +G  E AL  F  M +EG   + +TFV ++ +C+H+G ++ G+     + ++ G    I 
Sbjct: 410 NGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRL-GFAFDIV 468

Query: 493 HFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           +   ++D+  + GK    E   +   ++ + ++W +++     HG+
Sbjct: 469 NMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGH 514



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 166/370 (44%), Gaps = 5/370 (1%)

Query: 172 ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY 231
           +S HA I      +D  V   LV  Y +   +     VF+       +  NA+   +   
Sbjct: 49  KSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQS 108

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
               + L +F  M  +  + + C+    LKAC+S  D   G ++ +  ++  ++ N  VG
Sbjct: 109 GRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVG 168

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
           +S++    K G + +A   FD + NKD+  + +II  Y QAG  ++A + F +M   GIK
Sbjct: 169 SSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIK 228

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            +  T+ S +  C  +  L  G+ +H   +  G   D+ V T+ V MY+K G I+ A  V
Sbjct: 229 PSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWV 288

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F     R+  SWN MI G V++GL  ++ + F  ++      D  T V +L  CS    +
Sbjct: 289 FYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASL 348

Query: 472 EEGK-KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
             GK  H  +I+        +     ++D+  + G   +   F+       N + W  +L
Sbjct: 349 ATGKILHGCAIRS---FESNLILSTAIVDLYSKCGSLKQ-ATFVFNRMKDRNVITWTAML 404

Query: 531 GACSWHGNIE 540
              + +G+ E
Sbjct: 405 VGLAQNGHAE 414


>gi|414881651|tpg|DAA58782.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 736

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 207/601 (34%), Positives = 324/601 (53%), Gaps = 8/601 (1%)

Query: 7   VFKSMPEL--NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKF-SKFSLSTVLKGFAN 63
           VF  +P    +V SWN+LLN  +       + H    M   E    S  S +      A 
Sbjct: 73  VFADIPAALRDVASWNSLLNPLSRHHPVSALSHFRSMMSSPEAVLPSPHSFAAAFTAAAR 132

Query: 64  SGYIKAGQVVHAMAIRL--GCALDK-FLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                AG V HA+A +L   C  +  F+S +L++MY K G   +A +VF  +   + V+W
Sbjct: 133 VPSASAGAVTHALACKLPSSCGSNNVFVSTALLNMYCKLGAVSDAKRVFDGMLHRNAVSW 192

Query: 121 GAIITCLDQQGCCQEAAKIFNLM-RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            A+++      C +EA ++F LM ++  ++ N+FV T+++ A +       G  +H ++ 
Sbjct: 193 AAMVSGYATGKCSEEAFELFRLMLQKCPLEKNEFVTTAVLSAVSVPLGLLMGTQLHGLVL 252

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K G      V N+LV+MY +   +    RVF +   ++S++W+A+ + +      +   R
Sbjct: 253 KDGLVGFVSVENSLVTMYAKAECMDAAMRVFGSSKERNSITWSAMITGYAQNGEANCAAR 312

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F QM   GF P   TF+ +L ACS +  +  GKQ H   +K   +    V ++LVDMY 
Sbjct: 313 MFLQMHSSGFTPTEFTFVGVLNACSDMGALVVGKQTHCLMVKLGFETQVYVKSALVDMYA 372

Query: 300 KSGCLEDAGVAFDSLAN-KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
           K GC+ DA   F  L +  D+  +TA+IT + Q GE E AL  + +M  +GI  +  T+ 
Sbjct: 373 KCGCIGDAKDGFHQLYDVDDVVLWTAMITGHVQNGEHEEALMLYSRMDKQGIIPSYLTVT 432

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L  C+ +A L  G+ LH+  +K    L   V TAL  MY+KCG+++D+  VF+    R
Sbjct: 433 SVLRACACLAALDLGKQLHAQILKCRFSLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDR 492

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D  SWN +I  + +HG G  AL+ F  M  EG  PD ITF+ +LSACSHMGL++ G  +F
Sbjct: 493 DVISWNSIISVFSQHGRGSDALDMFEEMKLEGTAPDHITFINLLSACSHMGLVDRGWFYF 552

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            ++ K Y + PT+ H+ACM+DIL RAG+  E ++FI    +     +W  +LGAC    +
Sbjct: 553 RAMTKDYNLIPTLDHYACMVDILSRAGQLKEAKDFIDSITIDHGTCLWRIVLGACRSLRD 612

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
            ++     E+L+EL  +  S Y+  S+I A Q +WND   VR L+  +G+ K+  CSW+E
Sbjct: 613 FDVGAYAGEQLMELGTEDSSAYILLSNIYAAQRKWNDVERVRHLMRLRGVSKDLGCSWVE 672

Query: 599 V 599
           +
Sbjct: 673 L 673



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 127/434 (29%), Positives = 212/434 (48%), Gaps = 12/434 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKD---MEKKFSKFSLSTVLKG 60
           AKRVF  M   N VSW A+++GYA     ++   LF  M     +EK  ++F  + VL  
Sbjct: 177 AKRVFDGMLHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQKCPLEK--NEFVTTAVLSA 234

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSC--SLVDMYSKCGLADNALKVFYRIKDPDVV 118
            +    +  G  +H + ++ G  L  F+S   SLV MY+K    D A++VF   K+ + +
Sbjct: 235 VSVPLGLLMGTQLHGLVLKDG--LVGFVSVENSLVTMYAKAECMDAAMRVFGSSKERNSI 292

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            W A+IT   Q G    AA++F  M  S   P +F    ++ A ++ G    G+  H ++
Sbjct: 293 TWSAMITGYAQNGEANCAARMFLQMHSSGFTPTEFTFVGVLNACSDMGALVVGKQTHCLM 352

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS-WNALFSRFQDYESPDQG 237
            K GFE+   V +ALV MY + G +      F  +   D V  W A+ +        ++ 
Sbjct: 353 VKLGFETQVYVKSALVDMYAKCGCIGDAKDGFHQLYDVDDVVLWTAMITGHVQNGEHEEA 412

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           L ++ +M  +G  P+  T   +L+AC+ L+ +  GKQLHA  +K        VGT+L  M
Sbjct: 413 LMLYSRMDKQGIIPSYLTVTSVLRACACLAALDLGKQLHAQILKCRFSLGGSVGTALSTM 472

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K G LED+ V F  + ++D+ ++ +II+ ++Q G    AL  F +M+LEG   +  T 
Sbjct: 473 YSKCGNLEDSMVVFRRMPDRDVISWNSIISVFSQHGRGSDALDMFEEMKLEGTAPDHITF 532

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA-LVAMYAKCGSIDDAEAVFKGSA 416
            + L+ CS +  +  G        K  +L+      A +V + ++ G + +A+       
Sbjct: 533 INLLSACSHMGLVDRGWFYFRAMTKDYNLIPTLDHYACMVDILSRAGQLKEAKDFIDSIT 592

Query: 417 L-RDTASWNMMIGG 429
           +   T  W +++G 
Sbjct: 593 IDHGTCLWRIVLGA 606



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 163/316 (51%), Gaps = 2/316 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A RVF S  E N ++W+A++ GYA++G+      +F  M       ++F+   VL  
Sbjct: 276 MDAAMRVFGSSKERNSITWSAMITGYAQNGEANCAARMFLQMHSSGFTPTEFTFVGVLNA 335

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD-PDVVA 119
            ++ G +  G+  H + ++LG     ++  +LVDMY+KCG   +A   F+++ D  DVV 
Sbjct: 336 CSDMGALVVGKQTHCLMVKLGFETQVYVKSALVDMYAKCGCIGDAKDGFHQLYDVDDVVL 395

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W A+IT   Q G  +EA  +++ M +  + P+   +TS++RA         G+ +HA I 
Sbjct: 396 WTAMITGHVQNGEHEEALMLYSRMDKQGIIPSYLTVTSVLRACACLAALDLGKQLHAQIL 455

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K  F     VG AL +MY + G +     VF  +  +D +SWN++ S F  +      L 
Sbjct: 456 KCRFSLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDRDVISWNSIISVFSQHGRGSDALD 515

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGK-QLHAHTIKHSLDGNHVVGTSLVDMY 298
           +F +M L+G  P+  TFI +L ACS +  V  G     A T  ++L         +VD+ 
Sbjct: 516 MFEEMKLEGTAPDHITFINLLSACSHMGLVDRGWFYFRAMTKDYNLIPTLDHYACMVDIL 575

Query: 299 DKSGCLEDAGVAFDSL 314
            ++G L++A    DS+
Sbjct: 576 SRAGQLKEAKDFIDSI 591



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 118/419 (28%), Positives = 198/419 (47%), Gaps = 19/419 (4%)

Query: 161 ATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSR--VFEAI--AHQ 216
           A +     R GE++H    K G  S   V N+L++ Y    R   G+   VF  I  A +
Sbjct: 23  AASSDRTPRTGEALHGWALKSGAASHAPVSNSLITFYCSLPRPLLGAAYVVFADIPAALR 82

Query: 217 DSVSWNALFSRFQDYESPDQGLRIFYQML--LKGFKPNMCTFIVILKACSSLSDVGFGKQ 274
           D  SWN+L +    +  P   L  F  M+   +   P+  +F     A + +     G  
Sbjct: 83  DVASWNSLLNPLSRHH-PVSALSHFRSMMSSPEAVLPSPHSFAAAFTAAARVPSASAGAV 141

Query: 275 LHAHTIK--HSLDGNHV-VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQ 331
            HA   K   S   N+V V T+L++MY K G + DA   FD + +++  ++ A+++ YA 
Sbjct: 142 THALACKLPSSCGSNNVFVSTALLNMYCKLGAVSDAKRVFDGMLHRNAVSWAAMVSGYAT 201

Query: 332 AGEAEMALKCFRKMRLE-GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
              +E A + FR M  +  ++ NEF   + L+  S    L  G  LH + +K G +  + 
Sbjct: 202 GKCSEEAFELFRLMLQKCPLEKNEFVTTAVLSAVSVPLGLLMGTQLHGLVLKDGLVGFVS 261

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
           V  +LV MYAK   +D A  VF  S  R++ +W+ MI GY ++G    A   F  M   G
Sbjct: 262 VENSLVTMYAKAECMDAAMRVFGSSKERNSITWSAMITGYAQNGEANCAARMFLQMHSSG 321

Query: 451 YVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEI 510
           + P E TFV VL+ACS MG +  GK+    + K+ G    +   + ++D+  + G   + 
Sbjct: 322 FTPTEFTFVGVLNACSDMGALVVGKQTHCLMVKL-GFETQVYVKSALVDMYAKCGCIGDA 380

Query: 511 ENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISAT 569
           ++   +     + ++W  ++      G+++  E   E+ L L  +M+   + PS ++ T
Sbjct: 381 KDGFHQLYDVDDVVLWTAMIT-----GHVQNGEH--EEALMLYSRMDKQGIIPSYLTVT 432


>gi|449442142|ref|XP_004138841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Cucumis sativus]
          Length = 704

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 191/601 (31%), Positives = 329/601 (54%), Gaps = 3/601 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A  +F  MP  + VSWN ++ G+   G+ +    +   M+    +  +++  ++LKG A 
Sbjct: 52  ADVLFDEMPMRDSVSWNTMIAGHINCGNLEASWDVLRCMRSCGFELDRYTFGSMLKGIAF 111

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +G    GQ VH++ I++G A + +   +L+DMY+KC   ++A   F  I   + V+W A+
Sbjct: 112 AGMFHLGQQVHSIIIKMGYAENVYAGSALLDMYAKCEKLEDAYLSFLSISKHNTVSWNAM 171

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q G  + A  + + M +   K +      L+    +         +H  I K+G 
Sbjct: 172 INGYAQAGDRETAFWLLDCMEQEGEKVDDGTYAPLLPLLDDADFCNLTSQLHGKIIKHGL 231

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAH-QDSVSWNALFSRFQDYESPDQGLRIFY 242
           E    + NAL++ Y + G +    R+F++ A  +D V+WN+L + +      D   ++  
Sbjct: 232 ELVNTMCNALITSYSKCGSLDDAKRIFDSSAGIRDLVTWNSLLAAYLLRSQEDLAFKLLI 291

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS- 301
            M   GF+P++ ++  I+ AC + +    G+ LH   IK   + +  +  +L+ MY KS 
Sbjct: 292 DMQEHGFEPDLYSYTSIISACFNENISNNGRSLHGLVIKRGFEQSVPISNALISMYLKSD 351

Query: 302 -GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +++A   F+SL  KD  ++ +I+T  +Q G +E A+K F  MR   +  + ++ ++ 
Sbjct: 352 YGSMKEALCIFESLEFKDRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAV 411

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L  CS +AT   G+ +H +A+K G   + FVS++L+ MY+KCG I+DA   F+ ++   +
Sbjct: 412 LRSCSDLATFQLGQQIHVLALKYGLESNEFVSSSLIFMYSKCGIIEDARRSFEEASKNSS 471

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            +WN ++ GY +HG    AL+ F +M ++    D ITFV VL+ACSH+GL+E+G K    
Sbjct: 472 ITWNALMFGYAQHGQCNVALDLFFLMEEKKVKMDHITFVAVLTACSHIGLVEQGCKFLRC 531

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           ++  YG+ P ++H+AC +D+ GR+G+  E +  I E    P+  VW+  LGAC   GNIE
Sbjct: 532 MESDYGVPPRMEHYACAVDLYGRSGRLEEAKALIEEMPFKPDTTVWKTFLGACRSCGNIE 591

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           L  + A  LLE+EP+    YV  S++     RW++ + V+ L+  +G+KK P  SWIEV+
Sbjct: 592 LACQVAGHLLEMEPEEHCTYVLLSNMYGNLMRWDEKAKVKRLMKERGVKKVPGWSWIEVN 651

Query: 601 G 601
            
Sbjct: 652 N 652



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 128/471 (27%), Positives = 227/471 (48%), Gaps = 13/471 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A   F S+ + N VSWNA++NGYA++GD +    L   M+   +K    + + +L  
Sbjct: 150 LEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDGTYAPLLPL 209

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD-PDVVA 119
             ++ +      +H   I+ G  L   +  +L+  YSKCG  D+A ++F       D+V 
Sbjct: 210 LDDADFCNLTSQLHGKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFDSSAGIRDLVT 269

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W +++     +     A K+   M+E   +P+ +  TS++ A         G S+H ++ 
Sbjct: 270 WNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNNGRSLHGLVI 329

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSR-----VFEAIAHQDSVSWNALFSRFQDYESP 234
           K GFE    + NAL+SMY+++    YGS      +FE++  +D VSWN++ +      S 
Sbjct: 330 KRGFEQSVPISNALISMYLKS---DYGSMKEALCIFESLEFKDRVSWNSILTGLSQTGSS 386

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
           +  ++ F  M       +  +F  +L++CS L+    G+Q+H   +K+ L+ N  V +SL
Sbjct: 387 EDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLALKYGLESNEFVSSSL 446

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           + MY K G +EDA  +F+  +      + A++  YAQ G+  +AL  F  M  + +K + 
Sbjct: 447 IFMYSKCGIIEDARRSFEEASKNSSITWNALMFGYAQHGQCNVALDLFFLMEEKKVKMDH 506

Query: 355 FTLASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
            T  + L  CS +  +  G + L  +    G    M      V +Y + G +++A+A+ +
Sbjct: 507 ITFVAVLTACSHIGLVEQGCKFLRCMESDYGVPPRMEHYACAVDLYGRSGRLEEAKALIE 566

Query: 414 GSALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
               + DT  W   +G     G  E A +    +L+    P+E    V+LS
Sbjct: 567 EMPFKPDTTVWKTFLGACRSCGNIELACQVAGHLLE--MEPEEHCTYVLLS 615



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 116/475 (24%), Positives = 223/475 (46%), Gaps = 9/475 (1%)

Query: 74  HAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCC 133
           H++A++LG   D +   ++++ Y KC    +A  +F  +   D V+W  +I      G  
Sbjct: 21  HSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNL 80

Query: 134 QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNAL 193
           + +  +   MR    + +++   S+++     G    G+ +H++I K G+  +   G+AL
Sbjct: 81  EASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSAL 140

Query: 194 VSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
           + MY +  ++      F +I+  ++VSWNA+ + +      +    +   M  +G K + 
Sbjct: 141 LDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDD 200

Query: 254 CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
            T+  +L             QLH   IKH L+  + +  +L+  Y K G L+DA   FDS
Sbjct: 201 GTYAPLLPLLDDADFCNLTSQLHGKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFDS 260

Query: 314 LAN-KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
            A  +DL  + +++ +Y    + ++A K    M+  G + + ++  S ++ C       N
Sbjct: 261 SAGIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNN 320

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKC--GSIDDAEAVFKGSALRDTASWNMMIGGY 430
           GR LH + +K G    + +S AL++MY K   GS+ +A  +F+    +D  SWN ++ G 
Sbjct: 321 GRSLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTGL 380

Query: 431 VKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITP 489
            + G  E A+++F  M       D  +F  VL +CS +   + G++ H  ++K  YG+  
Sbjct: 381 SQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLALK--YGLES 438

Query: 490 TIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG--NIELD 542
                + +I +  + G   +      E     +++ W  L+   + HG  N+ LD
Sbjct: 439 NEFVSSSLIFMYSKCGIIEDARRSFEEAS-KNSSITWNALMFGYAQHGQCNVALD 492



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 4/172 (2%)

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           LAN  L HS+AVK G + D++    ++  Y KC  +  A+ +F    +RD+ SWN MI G
Sbjct: 14  LANLLLNHSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAG 73

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITP 489
           ++  G  E + +  R M   G+  D  TF  +L   +  G+   G++  S I K+ G   
Sbjct: 74  HINCGNLEASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKM-GYAE 132

Query: 490 TIKHFACMIDILGRAGKFTEIE-NFITETKLTPNALVWENLLGACSWHGNIE 540
            +   + ++D+  +  K  +   +F++ +K   N + W  ++   +  G+ E
Sbjct: 133 NVYAGSALLDMYAKCEKLEDAYLSFLSISK--HNTVSWNAMINGYAQAGDRE 182


>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 191/582 (32%), Positives = 313/582 (53%), Gaps = 4/582 (0%)

Query: 19  WNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAI 78
           WN L+ GY+ +G G   + ++  M  +  +    +   VLK  A++  ++ G+ VH   +
Sbjct: 10  WNTLIRGYSIAGVGGG-LEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGSVV 68

Query: 79  RLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC-CQEAA 137
           +LG   D F+  +L+  Y  CG   +A +VF  + + D+V+W  +I      G   ++A 
Sbjct: 69  KLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRDAL 128

Query: 138 KIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMY 197
            +F LM +  +KPN   ++S +    E    + G  +H    + G ESD  + N+L+ MY
Sbjct: 129 DMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSLIDMY 188

Query: 198 MENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFI 257
            ++G  +  S VF  +  ++ VSWNA+ + F         + +  QM   G  PN  TF 
Sbjct: 189 AKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFT 248

Query: 258 VILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK 317
            +L AC+ +  V  GK++HA +I      +  V  +L DMY KSG L+ A   FD+ + +
Sbjct: 249 NVLPACARMGLVRPGKEIHARSIHMGCAFDLFVSNALTDMYAKSGHLKLARNVFDT-SLR 307

Query: 318 DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLH 377
           D  +Y  +I  ++Q  +   +L  F +M+L G+K +  +    L+ C+ +  +  G+ +H
Sbjct: 308 DEVSYNILIVGHSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEIH 367

Query: 378 SIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGE 437
              ++    + +FV+ +L+  Y KCG I  A  +F     +D ASWN MI GY   G  +
Sbjct: 368 GFLLRKLFHIHLFVANSLLDFYTKCGRIGLARNIFDRMTNKDVASWNTMILGYGMLGELD 427

Query: 438 KALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACM 497
            A++ F  M  +    D ++F+ VLSACSH GL+E+G+K+F  +K   GI PT  H+ACM
Sbjct: 428 TAIDLFENMRKDDVEYDSVSFIAVLSACSHGGLLEKGRKYFDELKA-RGIEPTQMHYACM 486

Query: 498 IDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKME 557
           +D+LGRAG   E    I    + P+A +W  LLGAC  +GN+EL    AE L EL+P+  
Sbjct: 487 VDLLGRAGLMEEAAELIKGLPIVPDANIWGALLGACRIYGNLELAAWAAEHLFELKPEHS 546

Query: 558 SNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
             Y   S++ A  GRW++ + +R L+ S+G+KK P CSW+++
Sbjct: 547 GYYTLLSNMYAETGRWDEANRIRELMKSRGVKKSPGCSWVQI 588



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 123/427 (28%), Positives = 206/427 (48%), Gaps = 3/427 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESG-DGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           A RVF  MPE ++VSWN ++  ++ +G   +  + +F  M D   K +  ++S+ L    
Sbjct: 95  AGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRDALDMFRLMIDEGLKPNSITISSFLPVLV 154

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
              + KAG+ VH  +IR+G   D F++ SL+DMY+K G +  A  VFY++   +VV+W A
Sbjct: 155 ELEFFKAGREVHGSSIRMGLESDIFIANSLIDMYAKSGHSTEASNVFYKLDAKNVVSWNA 214

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I    Q      A  +   M++    PN    T+++ A    G  R G+ IHA     G
Sbjct: 215 MIANFAQNRFELVAVGLVRQMQDYGELPNSVTFTNVLPACARMGLVRPGKEIHARSIHMG 274

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
              D  V NAL  MY ++G +     VF+  + +D VS+N L           + L +F 
Sbjct: 275 CAFDLFVSNALTDMYAKSGHLKLARNVFDT-SLRDEVSYNILIVGHSQTSDCSESLSLFS 333

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M L G K +  +F+  L AC++L+ +  GK++H   ++     +  V  SL+D Y K G
Sbjct: 334 EMQLMGLKQDNVSFMGALSACANLTAIKQGKEIHGFLLRKLFHIHLFVANSLLDFYTKCG 393

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            +  A   FD + NKD+ ++  +I  Y   GE + A+  F  MR + ++ +  +  + L+
Sbjct: 394 RIGLARNIFDRMTNKDVASWNTMILGYGMLGELDTAIDLFENMRKDDVEYDSVSFIAVLS 453

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG-SALRDTA 421
            CS    L  GR         G          +V +  + G +++A  + KG   + D  
Sbjct: 454 ACSHGGLLEKGRKYFDELKARGIEPTQMHYACMVDLLGRAGLMEEAAELIKGLPIVPDAN 513

Query: 422 SWNMMIG 428
            W  ++G
Sbjct: 514 IWGALLG 520



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 101/226 (44%), Gaps = 2/226 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++LA+ VF +    + VS+N L+ G++++ D  + + LF  M+ M  K    S    L  
Sbjct: 295 LKLARNVFDTSLR-DEVSYNILIVGHSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSA 353

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            AN   IK G+ +H   +R    +  F++ SL+D Y+KCG    A  +F R+ + DV +W
Sbjct: 354 CANLTAIKQGKEIHGFLLRKLFHIHLFVANSLLDFYTKCGRIGLARNIFDRMTNKDVASW 413

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I      G    A  +F  MR+  V+ +     +++ A +  G    G      +  
Sbjct: 414 NTMILGYGMLGELDTAIDLFENMRKDDVEYDSVSFIAVLSACSHGGLLEKGRKYFDELKA 473

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALF 225
            G E   +    +V +    G +   + + + +    D+  W AL 
Sbjct: 474 RGIEPTQMHYACMVDLLGRAGLMEEAAELIKGLPIVPDANIWGALL 519


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 193/597 (32%), Positives = 322/597 (53%), Gaps = 1/597 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F SM +   V+W  L+ GYA++   ++   LF  M          SL+T+L GF  
Sbjct: 151 ARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTE 210

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +   + VH+  I+LG      +S SL+D Y K      A ++F  I + D V + A+
Sbjct: 211 FDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNAL 270

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +T   ++G  +EA  +F  M+E   +P +F   +++ A  +  D   G+ +H  + K  F
Sbjct: 271 LTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNF 330

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             +  V NAL+  Y ++ RV   S++F  +   D +S+N L + +       + L +F +
Sbjct: 331 VWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKE 390

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           +   GF      F  +L   +   ++  G+Q+H+ TI        +VG SLVDMY K G 
Sbjct: 391 LQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGE 450

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
             +A   F  LA +    +TA+I+SY Q G  E  LK F +M+   I ++  T AS +  
Sbjct: 451 FGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRA 510

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +A+L  G+ LHS  + +G++ ++F  +ALV MYAKCGSI DA  +F+   +R++ SW
Sbjct: 511 CASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSW 570

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I  Y ++G G+  L  F  M+  G  PD ++ + +L ACSH GL+EEG ++F S+ +
Sbjct: 571 NALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTR 630

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
           IY + P  +H+A  ID+L R G+F E E  + +    P+ ++W ++L +C  H N EL +
Sbjct: 631 IYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAK 690

Query: 544 KDAEKLLELEP-KMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           K A +L  ++  +  + YV  S+I A  G W++   V+  +  +G+KK P+ SW+E+
Sbjct: 691 KAANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEI 747



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 124/463 (26%), Positives = 231/463 (49%), Gaps = 6/463 (1%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           LA ++F  +PE + V++NALL GY++ G  ++ ++LF  M+++  + ++F+ + +L    
Sbjct: 251 LAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGI 310

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
               I+ GQ VH   ++     + F++ +L+D YSK      A K+FY + + D +++  
Sbjct: 311 QLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNV 370

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           ++TC    G  +E+ ++F  ++ +      F   +L+     + +   G  IH+      
Sbjct: 371 LVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTD 430

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
             S+ LVGN+LV MY + G     +R+F  +A Q SV W A+ S +      + GL++F 
Sbjct: 431 AISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFV 490

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M       +  T+  I++AC+SL+ +  GKQLH+H I      N   G++LVDMY K G
Sbjct: 491 EMQRAKIGADAATYASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCG 550

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            ++DA   F  +  ++  ++ A+I++YAQ G+ +  L+ F +M   G++ +  +L S L 
Sbjct: 551 SIKDALQMFQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILC 610

Query: 363 GCSPVATLANGRLLHSIAVKTGHLL---DMFVSTALVAMYAKCGSIDDAEAVFKGSALR- 418
            CS    +  G        +   L+   + + ST  + M  + G  D+AE +        
Sbjct: 611 ACSHCGLVEEGLQYFDSMTRIYKLVPKKEHYAST--IDMLCRGGRFDEAEKLMAQMPFEP 668

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVV 461
           D   W+ ++     H   E A +A   + +   + D   +V +
Sbjct: 669 DEIMWSSVLNSCGIHKNQELAKKAANQLFNMKVLRDAAPYVTM 711



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 117/452 (25%), Positives = 211/452 (46%), Gaps = 2/452 (0%)

Query: 87  FLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRES 146
           F + +++  Y K G    A  +F  +     V W  +I    Q    +EA  +F  M   
Sbjct: 133 FSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRH 192

Query: 147 SVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYG 206
            + P+   L +L+   TE         +H+ + K G++S  +V N+L+  Y +   +   
Sbjct: 193 GIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLA 252

Query: 207 SRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266
            ++F  I  +DSV++NAL + +       + + +F++M   G++P   TF  IL A   L
Sbjct: 253 FQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQL 312

Query: 267 SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
            D+ FG+Q+H   +K +   N  V  +L+D Y K   + +A   F  +   D  +Y  ++
Sbjct: 313 DDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLV 372

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL 386
           T YA  G  + +L+ F++++  G     F  A+ L+  +    L  GR +HS  + T  +
Sbjct: 373 TCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAI 432

Query: 387 LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM 446
            ++ V  +LV MYAKCG   +A  +F   A++ +  W  MI  YV+ GL E  L+ F  M
Sbjct: 433 SEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEM 492

Query: 447 LDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGK 506
                  D  T+  ++ AC+ +  +  GK+  S I    G    +   + ++D+  + G 
Sbjct: 493 QRAKIGADAATYASIVRACASLASLTLGKQLHSHIIG-SGYISNVFSGSALVDMYAKCGS 551

Query: 507 FTEIENFITETKLTPNALVWENLLGACSWHGN 538
             +      E  +  N++ W  L+ A + +G+
Sbjct: 552 IKDALQMFQEMPVR-NSVSWNALISAYAQNGD 582



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 47/97 (48%)

Query: 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML 447
           ++F +  ++  Y K G++ +A  +F     R   +W M+IGGY ++    +A   F  M 
Sbjct: 131 NIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMG 190

Query: 448 DEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
             G  PD ++   +LS  +    + E ++  S + K+
Sbjct: 191 RHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKL 227


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 192/599 (32%), Positives = 325/599 (54%), Gaps = 10/599 (1%)

Query: 6   RVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSG 65
           ++F  +P  N V W+A++ G  ++ +    + LF  M+ +    S+   ++V +  A   
Sbjct: 232 KIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLS 291

Query: 66  YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT 125
            +K G  +HA A++     D  +  + +DMY+KCG   +A ++F  +    +  + AII 
Sbjct: 292 ALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIV 351

Query: 126 CLDQQGCCQ-----EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
                GC +     EA + F L+ +S +  N+  L+    A         G  +H++  K
Sbjct: 352 -----GCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSVK 406

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
               S+  V N+++ MY +   +S    +F+ +  +D+VSWNA+ +  +   + ++ L +
Sbjct: 407 STLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLNL 466

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  ML    +P+  T+  +LKACSS   +  G ++H   IK  L  +  VG +L+DMY K
Sbjct: 467 FASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCK 526

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +E+A    D +  + + ++ AII  +     +E A   F +M    +K + FT A  
Sbjct: 527 CGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIV 586

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L+ C+ +A++  G+ +H   +K     D+++++ LV MY+KCG++ D+  VF+ +  +D 
Sbjct: 587 LDACANLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPNKDF 646

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            +WN MI GY +HGLGE+AL  F  M  E   P+  TFV +L AC+HMG I++G  +F++
Sbjct: 647 VTWNAMICGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRACAHMGFIDKGLHYFNA 706

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +   YG+ P I+H++CMIDI+GR+G+ +E    I E     +A++W  LL  C  HGNIE
Sbjct: 707 MLTEYGLEPQIEHYSCMIDIIGRSGRISEALKLIQEMPFEADAVIWRTLLSICKIHGNIE 766

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           + EK    +L+LEP+  S  +  S+I A  G W   S +R ++    +KKEP CSWIEV
Sbjct: 767 IAEKATNAILQLEPEDSSACILLSNIYADAGMWGKVSEMRKMMRYNKLKKEPGCSWIEV 825



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 158/544 (29%), Positives = 264/544 (48%), Gaps = 15/544 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLK 59
           M LA   F   P+ +VVSWN++L+G+ ++G+ +K + +F  M +  E  F + + + VLK
Sbjct: 125 MNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFDQTTFAVVLK 184

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             +       G  VH + +R+G   D     +L+DMY+KC   D++LK+F  I   + V 
Sbjct: 185 ACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVC 244

Query: 120 WGAIITCLDQQGCCQEAAKIFNL-----MRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
           W AII      GC Q    I  L     M++  +  +Q +  S+ R+       + G  +
Sbjct: 245 WSAIIA-----GCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALKVGTQL 299

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           HA   K  F SD  VG A + MY + G ++   R+F ++       +NA+       E  
Sbjct: 300 HAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIVGCVRNEKG 359

Query: 235 DQGLRIFYQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
            + L+ F+Q+LLK G   N  +      AC+S+     G+QLH+ ++K +L  N  V  S
Sbjct: 360 FEALQ-FFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSNICVANS 418

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           ++DMY K   L +A   FD +  +D  ++ A+I ++ Q G  E  L  F  M    ++ +
Sbjct: 419 ILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPD 478

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
           +FT  S L  CS    L +G  +H+  +K+G  LD FV  AL+ MY KCG I++A+ +  
Sbjct: 479 QFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHD 538

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
               +   SWN +I G+      E A   F  ML     PD  T+ +VL AC+++  +  
Sbjct: 539 RIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGL 598

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           GK+    I K+  +   +   + ++D+  + G   +    + E     + + W  ++   
Sbjct: 599 GKQIHGQIIKL-ELHSDVYITSTLVDMYSKCGNMQD-SALVFEKAPNKDFVTWNAMICGY 656

Query: 534 SWHG 537
           + HG
Sbjct: 657 AQHG 660



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 130/453 (28%), Positives = 227/453 (50%), Gaps = 9/453 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R+F S+P+ ++  +NA++ G   +  G + +  F  +      F++ SLS      A+
Sbjct: 331 AQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACAS 390

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G+ +H+++++     +  ++ S++DMY KC     A  +F  ++  D V+W A+
Sbjct: 391 IKGDLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAV 450

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I   +Q G  +E   +F  M    ++P+QF   S+++A +       G  IH  I K G 
Sbjct: 451 IAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGL 510

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D+ VG AL+ MY + G +    ++ + I  Q  VSWNA+ + F   +  +     FY+
Sbjct: 511 GLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYE 570

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           ML    KP+  T+ ++L AC++L+ VG GKQ+H   IK  L  +  + ++LVDMY K G 
Sbjct: 571 MLKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGN 630

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++D+ + F+   NKD   + A+I  YAQ G  E AL  F +M+LE ++ N  T  S L  
Sbjct: 631 MQDSALVFEKAPNKDFVTWNAMICGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRA 690

Query: 364 CSPVATLANGRLLHSI-AVKTGHLLDMFVS--TALVAMYAKCGSIDDAEAVFKGSALR-D 419
           C+ +  +  G  LH   A+ T + L+  +   + ++ +  + G I +A  + +      D
Sbjct: 691 CAHMGFIDKG--LHYFNAMLTEYGLEPQIEHYSCMIDIIGRSGRISEALKLIQEMPFEAD 748

Query: 420 TASWNMMIGGYVKHG---LGEKALEAFRMMLDE 449
              W  ++     HG   + EKA  A   +  E
Sbjct: 749 AVIWRTLLSICKIHGNIEIAEKATNAILQLEPE 781



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 141/529 (26%), Positives = 251/529 (47%), Gaps = 44/529 (8%)

Query: 39  FCSMKDMEKKFSKF-----SLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLV 93
           FC++  +++  +K      + S +++  ++   +K G+  HA  I  G   D ++S  L+
Sbjct: 26  FCTISTLQQNQTKLPTKIRTFSHIIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLM 85

Query: 94  DMYSKCGLADNALKVF-------------------------------YRIKDPDVVAWGA 122
            MY +C   + A KVF                               Y     DVV+W +
Sbjct: 86  KMYLRCSHLNYAYKVFEKMSQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNS 145

Query: 123 IITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           +++   Q G C+++  +F ++ R   V  +Q     +++A +   D   G  +H +I + 
Sbjct: 146 MLSGFLQNGECRKSIDVFLDMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRM 205

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           GF  D + G+AL+ MY +  R+    ++F  I  ++ V W+A+ +     +    GL +F
Sbjct: 206 GFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELF 265

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M   G   +   +  + ++C+ LS +  G QLHAH +K     +  VGT+ +DMY K 
Sbjct: 266 KEMQKVGIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKC 325

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G L DA   F+SL    L  Y AII    +  +   AL+ F+ +   G+  NE +L+   
Sbjct: 326 GSLADAQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAF 385

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           + C+ +    +GR LHS++VK+    ++ V+ +++ MY KC ++ +A  +F     RD  
Sbjct: 386 SACASIKGDLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAV 445

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSS 480
           SWN +I  + ++G  E+ L  F  ML     PD+ T+  VL ACS    +  G + H   
Sbjct: 446 SWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRI 505

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTE---IENFI-TETKLTPNALV 525
           IK   G+   +     +ID+  + G   E   I + I  +T ++ NA++
Sbjct: 506 IKSGLGLDSFVG--GALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAII 552



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 112/228 (49%), Gaps = 2/228 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E AK++   + +  +VSWNA++ G+      +     F  M  M  K   F+ + VL  
Sbjct: 530 IEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDA 589

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            AN   +  G+ +H   I+L    D +++ +LVDMYSKCG   ++  VF +  + D V W
Sbjct: 590 CANLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPNKDFVTW 649

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG-ESIHAVIC 179
            A+I    Q G  +EA   F  M+  +V+PN     S++RA    G    G    +A++ 
Sbjct: 650 NAMICGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRACAHMGFIDKGLHYFNAMLT 709

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-DSVSWNALFS 226
           +YG E      + ++ +   +GR+S   ++ + +  + D+V W  L S
Sbjct: 710 EYGLEPQIEHYSCMIDIIGRSGRISEALKLIQEMPFEADAVIWRTLLS 757


>gi|297815974|ref|XP_002875870.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321708|gb|EFH52129.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 700

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 195/601 (32%), Positives = 324/601 (53%), Gaps = 2/601 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFS--LSTVL 58
           + +A++VF  MP  ++VSW A++ GY  + +  + M LF +M+ ++   S  +  +S VL
Sbjct: 50  LRVARQVFDKMPHRDIVSWTAIIKGYVTANNSDEAMILFSAMRVVDPAVSPDTSVVSVVL 109

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
           K    S  I  G+ +HA A++       F+  SL+DMY + G  + + +VF  +   + V
Sbjct: 110 KACGQSSNIAYGESLHAYAVKTSLLSSVFVGSSLLDMYKRVGKIEKSCRVFSEMPFRNAV 169

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            W AIIT L   G  +E    F+ M  S    + F     ++A       + G+ IH  +
Sbjct: 170 TWTAIITGLVHAGRYKEGLTYFSEMSSSEELSDTFTFAIALKACAGLRQVKYGKQIHTHV 229

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
              GF++   V N+L +MY E G +  G  +FE ++ +D VSW +L   +      ++ +
Sbjct: 230 IVRGFDATVWVANSLATMYTECGEMRDGLCLFENMSERDVVSWTSLIVAYNRIGHEEKAV 289

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
             F +M      PN  TF  +  AC+SLS + +G+QLH +     L+ +  V  S++ MY
Sbjct: 290 ETFIKMRNSQVPPNEQTFATMFSACASLSRLVWGEQLHCNVFSLGLNDSLSVSNSMMKMY 349

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
              G L+ A V F  +  +D+ +++ II  Y+QAG  E A K F  MR  G K  +F LA
Sbjct: 350 STCGKLDSASVLFQGMRCRDIISWSTIIGGYSQAGFGEEAFKYFSWMRQSGPKPTDFALA 409

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L+    +A L  GR +H++A   G   +  V + L+ MY+KCG+I +A  +F+ +   
Sbjct: 410 SLLSVSGNMAVLEGGRQVHALAFCFGLEQNSTVRSTLINMYSKCGNIKEASKIFEETDRD 469

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D  S   MI GY +HG  ++A++ F   L  G+ PD +TF+ VL+AC+H G ++ G  +F
Sbjct: 470 DIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFSPDSVTFISVLTACTHSGQLDLGFHYF 529

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           + +++ Y + P  +H+ CM+D+L RAG+ +E E  I E     + +VW  LL AC   G+
Sbjct: 530 NLMQEKYNMRPAKEHYGCMVDLLCRAGRLSEAEKMIDEMSWKKDDVVWTTLLIACKAKGD 589

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           IE   + AE++LEL+P   +  V  ++I ++ G   + + VR  + ++G+ KEP  S I+
Sbjct: 590 IERGRRAAERILELDPTCATALVTLANIYSSTGNLEEAANVRKNMKAKGVIKEPGWSSIK 649

Query: 599 V 599
           +
Sbjct: 650 I 650



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 173/353 (49%), Gaps = 4/353 (1%)

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
           T   N+ +   +  G +    +VF+ + H+D VSW A+   +    + D+ + +F  M +
Sbjct: 34  TFDTNSHLRSLINAGNLRVARQVFDKMPHRDIVSWTAIIKGYVTANNSDEAMILFSAMRV 93

Query: 247 --KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
                 P+     V+LKAC   S++ +G+ LHA+ +K SL  +  VG+SL+DMY + G +
Sbjct: 94  VDPAVSPDTSVVSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVFVGSSLLDMYKRVGKI 153

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
           E +   F  +  ++   +TAIIT    AG  +  L  F +M      S+ FT A  L  C
Sbjct: 154 EKSCRVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSSSEELSDTFTFAIALKAC 213

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
           + +  +  G+ +H+  +  G    ++V+ +L  MY +CG + D   +F+  + RD  SW 
Sbjct: 214 AGLRQVKYGKQIHTHVIVRGFDATVWVANSLATMYTECGEMRDGLCLFENMSERDVVSWT 273

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
            +I  Y + G  EKA+E F  M +    P+E TF  + SAC+ +  +  G++   ++  +
Sbjct: 274 SLIVAYNRIGHEEKAVETFIKMRNSQVPPNEQTFATMFSACASLSRLVWGEQLHCNVFSL 333

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
            G+  ++     M+ +    GK  +  + + +     + + W  ++G  S  G
Sbjct: 334 -GLNDSLSVSNSMMKMYSTCGKL-DSASVLFQGMRCRDIISWSTIIGGYSQAG 384


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 201/596 (33%), Positives = 301/596 (50%), Gaps = 69/596 (11%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK------------------- 113
           +HA  I+   + + F+   LVD Y KCG  ++A KVF R+                    
Sbjct: 41  IHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTKFGK 100

Query: 114 ------------DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRA 161
                       +PD  +W A+++   Q    +EA + F  M       N++   S + A
Sbjct: 101 LDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSA 160

Query: 162 TTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSW 221
                D   G  IHA+I K  +  D  +G+ALV MY + G V+   R F+ +A ++ VSW
Sbjct: 161 CAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSW 220

Query: 222 NALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK 281
           N+L + ++      + L +F  M+  G +P+  T   ++ AC+S S +  G Q+HA  +K
Sbjct: 221 NSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVK 280

Query: 282 HSLDGNHVV-GTSLVDMYDKSGCLEDAGVAFD---------------------------- 312
                N +V G +LVDMY K   + +A + FD                            
Sbjct: 281 RDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARL 340

Query: 313 ---SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369
              ++  K++ ++ A+I  Y Q GE E A++ F  ++ E I    +T  + LN C+ +A 
Sbjct: 341 MFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLAD 400

Query: 370 LANGRLLHSIAVKTGHLL------DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           L  GR  H+  +K G         D+FV  +L+ MY KCG ++D   VF+    RD  SW
Sbjct: 401 LKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSW 460

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N MI GY ++G G  ALE FR ML  G  PD +T + VLSACSH GL+EEG+++F S++ 
Sbjct: 461 NAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRT 520

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
             G+ P   HF CM+D+LGRAG   E  + I    + P+ +VW +LL AC  HGNIEL +
Sbjct: 521 ELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAACKVHGNIELGK 580

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
             AEKL+E++P     YV  S++ A  GRW D   VR  +  +G+ K+P CSWIE+
Sbjct: 581 YVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVIKQPGCSWIEI 636



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 137/476 (28%), Positives = 237/476 (49%), Gaps = 44/476 (9%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  VFKSMPE +  SWNA+++G+A+    ++ +  F  M   +   +++S  + L  
Sbjct: 101 LDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSA 160

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    +  G  +HA+  +    LD ++  +LVDMYSKCG+   A + F  +   ++V+W
Sbjct: 161 CAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSW 220

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++ITC +Q G   +A ++F +M ++ V+P++  L S+V A       R G  IHA + K
Sbjct: 221 NSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVK 280

Query: 181 YG-FESDTLVGNALVSMYMENGRVSYGSRVFEAIA------------------------- 214
              + +D ++GNALV MY +  RV+    VF+ +                          
Sbjct: 281 RDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARL 340

Query: 215 ------HQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSD 268
                  ++ VSWNAL + +      ++ +R+F  +  +   P   TF  +L AC++L+D
Sbjct: 341 MFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLAD 400

Query: 269 VGFGKQLHAHTIKHSL------DGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAY 322
           +  G+Q H   +KH        + +  VG SL+DMY K G +ED  + F+ +  +D+ ++
Sbjct: 401 LKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSW 460

Query: 323 TAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG-RLLHSIAV 381
            A+I  YAQ G    AL+ FRKM + G K +  T+   L+ CS    +  G R  HS+  
Sbjct: 461 NAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRT 520

Query: 382 KTG--HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DTASWNMMIGGYVKHG 434
           + G   + D F  T +V +  + G +D+A  + +   ++ D   W  ++     HG
Sbjct: 521 ELGLAPMKDHF--TCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAACKVHG 574



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 115/397 (28%), Positives = 185/397 (46%), Gaps = 67/397 (16%)

Query: 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSM-----YMENGR-- 202
           P   +L S VR+ +    +R    IHA I K  F S+  + N LV       Y E+ R  
Sbjct: 21  PFAKLLDSCVRSKSGIDARR----IHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKV 76

Query: 203 ---------VSYGS---------------RVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
                     SY +                VF+++   D  SWNA+ S F  ++  ++ L
Sbjct: 77  FDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEAL 136

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           R F  M  + F  N  +F   L AC+ L+D+  G Q+HA   K     +  +G++LVDMY
Sbjct: 137 RFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMY 196

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G +  A  AFD +A +++ ++ ++IT Y Q G A  AL+ F  M   G++ +E TLA
Sbjct: 197 SKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLA 256

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTG-HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           S ++ C+  + +  G  +H+  VK   +  D+ +  ALV MYAKC  +++A  VF    L
Sbjct: 257 SVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPL 316

Query: 418 R-------------------------------DTASWNMMIGGYVKHGLGEKALEAFRMM 446
           R                               +  SWN +I GY ++G  E+A+  F ++
Sbjct: 317 RNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLL 376

Query: 447 LDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
             E   P   TF  +L+AC+++  ++ G++  + I K
Sbjct: 377 KRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILK 413


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 188/596 (31%), Positives = 323/596 (54%), Gaps = 2/596 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF+ M   + VSWN+L++GY  +G  +  + ++   +        F++S+VL    +
Sbjct: 175 ARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGS 234

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +K G  VH +  ++G A D  +   L+ MY K      A +VF ++   D V W  +
Sbjct: 235 LMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTM 294

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q G  + + K+F  M +  V P+   +TS +RA  ++GD + G+ +H  +   GF
Sbjct: 295 ICGYAQLGRHEASVKLFMDMIDGFV-PDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGF 353

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E DT+  N L+ MY + G +     VF+    +DSV+WN+L + +       +GL  F  
Sbjct: 354 ECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKM 413

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M ++  KP+  TF+++L   S L+D+  G+ +H   IK   +   ++G SL+D+Y K G 
Sbjct: 414 MKMER-KPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGE 472

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++D    F  ++  D+ ++  +I S     +  +  +   +MR EG+  +E T+   L  
Sbjct: 473 MDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPM 532

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           CS +A    G+ +H    K+G   ++ +  AL+ MY+KCGS+++   VFK    +D  +W
Sbjct: 533 CSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTW 592

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
             +I  +  +G G+KAL+AF+ M   G +PD + F+  + ACSH G+++EG + F  +K 
Sbjct: 593 TALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKT 652

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            Y + P ++H+AC++D+L R+G   + E FI    + P+A +W  LL AC   GN  + +
Sbjct: 653 DYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQ 712

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           + ++K+LEL       YV  S+I AT G+W+    VR  + ++G+KKEP  SWIE+
Sbjct: 713 RVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEI 768



 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 154/564 (27%), Positives = 275/564 (48%), Gaps = 16/564 (2%)

Query: 7   VFKSM-PELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSG 65
           VF+S+ P  NV  WN+++     +G   + +  +  M++ + +   F+  +V+   A   
Sbjct: 76  VFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARIL 135

Query: 66  YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT 125
            ++ G +VH  A+ +G   D ++  +L+DMYS+    DNA  VF  + + D V+W ++I+
Sbjct: 136 DLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLIS 195

Query: 126 CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
                G  ++A  +++  R + + P+ F ++S++ A       + G ++H VI K G   
Sbjct: 196 GYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAG 255

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           D ++GN L+SMY +  R+    RVF  +A +DSV+WN +   +      +  +++F  M 
Sbjct: 256 DVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDM- 314

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
           + GF P+M +    ++AC    D+  GK +H + I    + + V    L+DMY K G L 
Sbjct: 315 IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLL 374

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
            A   FD+   KD   + ++I  Y Q+G  +  L+ F+ M++E  K +  T    L+  S
Sbjct: 375 AAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLLLSIFS 433

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
            +A +  GR +H   +K G   ++ +  +L+ +YAKCG +DD   VF   +  D  SWN 
Sbjct: 434 QLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNT 493

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIY 485
           +I   V         +    M  EG +PDE T + +L  CS + +  +GK+    I K  
Sbjct: 494 VIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFK-S 552

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLT--PNALVWENLLGACSWHGNIELDE 543
           G    +     +I++  + G    +EN I   K     + + W  L+ A   +G      
Sbjct: 553 GFESNVPIGNALIEMYSKCG---SLENCIKVFKYMKEKDVVTWTALISAFGMYG------ 603

Query: 544 KDAEKLLELEPKMESNYVFPSDIS 567
            + +K L+    ME + V P  ++
Sbjct: 604 -EGKKALKAFQDMELSGVLPDSVA 626



 Score =  215 bits (547), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 137/475 (28%), Positives = 234/475 (49%), Gaps = 7/475 (1%)

Query: 39  FCS-MKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYS 97
           FCS   +  +   +F  S++LK  +++      + VH++ I  G +L    S  L+  Y+
Sbjct: 6   FCSNFNNTPEPSQEFLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYA 65

Query: 98  KCGLADNALKVFYRIKDPD-VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLT 156
           +     +++ VF  I   + V  W +II  L   G   +A   +  MRE  ++P+ F   
Sbjct: 66  QVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFP 125

Query: 157 SLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ 216
           S++ +     D   G  +H    + GFESD  +GNAL+ MY     +     VFE ++++
Sbjct: 126 SVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNR 185

Query: 217 DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLH 276
           DSVSWN+L S +      +  L ++++  + G  P+  T   +L AC SL  V  G  +H
Sbjct: 186 DSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVH 245

Query: 277 AHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAE 336
               K  + G+ ++G  L+ MY K   L +A   F  +A KD   +  +I  YAQ G  E
Sbjct: 246 GVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHE 305

Query: 337 MALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALV 396
            ++K F  M ++G   +  ++ S +  C     L  G+ +H   + +G   D      L+
Sbjct: 306 ASVKLFMDM-IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILI 364

Query: 397 AMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI 456
            MYAKCG +  A+ VF  +  +D+ +WN +I GY + G  ++ LE+F+MM  E   PD +
Sbjct: 365 DMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMERK-PDSV 423

Query: 457 TFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEI 510
           TFV++LS  S +  I +G+  H   IK  +G    +     ++D+  + G+  ++
Sbjct: 424 TFVLLLSIFSQLADINQGRGIHCDVIK--FGFEAELIIGNSLLDVYAKCGEMDDL 476


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 206/606 (33%), Positives = 330/606 (54%), Gaps = 12/606 (1%)

Query: 4   AKRVFKSMPEL---NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           A+ VF++M      +VVSW+A++  Y  +G     + +F    ++    + +  + V++ 
Sbjct: 116 AEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRA 175

Query: 61  FANSGYIKAGQVVHAMAIRLG-CALDKFLSCSLVDMYSKCGLA-DNALKVFYRIKDPDVV 118
            +NS ++  G+V     ++ G    D  + CSL+DM+ K   + +NA KVF ++ + +VV
Sbjct: 176 CSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVV 235

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            W  +IT   Q G  +EA + F  M  S  + ++F L+S+  A  E  +   G+ +H+  
Sbjct: 236 TWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWA 295

Query: 179 CKYGFESDTLVGNALVSMYME---NGRVSYGSRVFEAIAHQDSVSWNALFSRF-QDYESP 234
            + G   D  V  +LV MY +   +G V    +VF+ +     +SW AL + + ++    
Sbjct: 296 IRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLA 353

Query: 235 DQGLRIFYQMLLKG-FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
            + + +F +M+ +G  +PN  TF    KAC +LSD   GKQ+     K  L  N  V  S
Sbjct: 354 TEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANS 413

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           ++ M+ KS  +EDA  AF+SL+ K+L +Y   +    +    E A K   ++    +  +
Sbjct: 414 VISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVS 473

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
            FT AS L+G + V ++  G  +HS  VK G   +  V  AL++MY+KCGSID A  VF 
Sbjct: 474 AFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFN 533

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
               R+  SW  MI G+ KHG   + LE F  M++EG  P+E+T+V +LSACSH+GL+ E
Sbjct: 534 FMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSE 593

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           G +HF+S+ + + I P ++H+ACM+D+L RAG  T+   FI       + LVW   LGAC
Sbjct: 594 GWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGAC 653

Query: 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPS 593
             H N EL +  A K+LEL+P   + Y+  S+I A  G+W + + +R  +  + + KE  
Sbjct: 654 RVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGG 713

Query: 594 CSWIEV 599
           CSWIEV
Sbjct: 714 CSWIEV 719



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 134/471 (28%), Positives = 231/471 (49%), Gaps = 15/471 (3%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E A +VF  M ELNVV+W  ++    + G  ++ +  F  M     +  KF+LS+V    
Sbjct: 220 ENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSAC 279

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKC---GLADNALKVFYRIKDPDVV 118
           A    +  G+ +H+ AIR G   D  + CSLVDMY+KC   G  D+  KVF R++D  V+
Sbjct: 280 AELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVM 337

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRE----SSVKPNQFVLTSLVRATTETGDQRCGESI 174
           +W A+IT   +   C  A +  NL  E      V+PN F  +S  +A     D R G+ +
Sbjct: 338 SWTALITGYMKN--CNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQV 395

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
                K G  S++ V N+++SM++++ R+    R FE+++ ++ VS+N          + 
Sbjct: 396 LGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNF 455

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
           +Q  ++  ++  +    +  TF  +L   +++  +  G+Q+H+  +K  L  N  V  +L
Sbjct: 456 EQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNAL 515

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           + MY K G ++ A   F+ + N+++ ++T++IT +A+ G A   L+ F +M  EG+K NE
Sbjct: 516 ISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNE 575

Query: 355 FTLASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
            T  + L+ CS V  ++ G R  +S+         M     +V +  + G + DA     
Sbjct: 576 VTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFIN 635

Query: 414 GSALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
               + D   W   +G    H   E    A R +L+    P+E    + LS
Sbjct: 636 TMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELD--PNEPAAYIQLS 684



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 159/607 (26%), Positives = 279/607 (45%), Gaps = 59/607 (9%)

Query: 4   AKRVFKSMP----ELNVVSWNALLNGYAESGDGQ-KVMHLFCSMKDMEKKFSKFSLSTVL 58
           AK   KS P     +NV   + L+  +  +GD +  V  L    +D  +     + S++L
Sbjct: 12  AKLPIKSQPSVSNRINVA--DRLILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLL 69

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF---YRIKDP 115
           K    +   + G++VHA  I      D  L  SL+ +YSK G +  A  VF    R    
Sbjct: 70  KSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKR 129

Query: 116 DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH 175
           DVV+W A++ C    G   +A K+F    E  + PN +  T+++RA + +     G    
Sbjct: 130 DVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTL 189

Query: 176 AVICKYG-FESDTLVGNALVSMYMENGRVSYGS--RVFEAIAHQDSVSWNALFSRFQDYE 232
             + K G FESD  VG +L+ M+++ G  S+ +  +VF+ ++  + V+W  + +R     
Sbjct: 190 GFLMKTGHFESDVCVGCSLIDMFVK-GENSFENAYKVFDKMSELNVVTWTLMITRCMQMG 248

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
            P + +R F  M+L GF+ +  T   +  AC+ L ++  GKQLH+  I+  L  +  V  
Sbjct: 249 FPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VEC 306

Query: 293 SLVDMYDK---SGCLEDAGVAFDSLANKDLFAYTAIITSYAQ-AGEAEMALKCFRKMRLE 348
           SLVDMY K    G ++D    FD + +  + ++TA+IT Y +    A  A+  F +M  +
Sbjct: 307 SLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQ 366

Query: 349 G-IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
           G ++ N FT +S    C  ++    G+ +   A K G   +  V+ ++++M+ K   ++D
Sbjct: 367 GHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMED 426

Query: 408 AEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
           A+  F+  + ++  S+N  + G  ++   E+A +    + +        TF  +LS  ++
Sbjct: 427 AQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVAN 486

Query: 468 MGLIEEGKKHFSSIKKIYGIT---PTIKHFACM------IDILGRAGKFTEIENFITETK 518
           +G I +G++  S + K+ G++   P       M      ID   R   F E  N I+ T 
Sbjct: 487 VGSIRKGEQIHSQVVKL-GLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTS 545

Query: 519 LT-------------------------PNALVWENLLGACSWHGNIELDEKDAEKLLE-- 551
           +                          PN + +  +L ACS  G +    +    + E  
Sbjct: 546 MITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDH 605

Query: 552 -LEPKME 557
            ++PKME
Sbjct: 606 KIKPKME 612



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 97/166 (58%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A+R F+S+ E N+VS+N  L+G   + + ++   L   + + E   S F+ +++L G
Sbjct: 424 MEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSG 483

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            AN G I+ G+ +H+  ++LG + ++ +  +L+ MYSKCG  D A +VF  +++ +V++W
Sbjct: 484 VANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISW 543

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
            ++IT   + G      + FN M E  VKPN+    +++ A +  G
Sbjct: 544 TSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVG 589



 Score = 39.7 bits (91), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 37/70 (52%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A RVF  M   NV+SW +++ G+A+ G   +V+  F  M +   K ++ +   +L  
Sbjct: 525 IDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSA 584

Query: 61  FANSGYIKAG 70
            ++ G +  G
Sbjct: 585 CSHVGLVSEG 594


>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 939

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 188/596 (31%), Positives = 323/596 (54%), Gaps = 2/596 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF+ M   + VSWN+L++GY  +G  +  + ++   +        F++S+VL    +
Sbjct: 175 ARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGS 234

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +K G  VH +  ++G A D  +   L+ MY K      A +VF ++   D V W  +
Sbjct: 235 LMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTM 294

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q G  + + K+F  M +  V P+   +TS +RA  ++GD + G+ +H  +   GF
Sbjct: 295 ICGYAQLGRHEASVKLFMDMIDGFV-PDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGF 353

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E DT+  N L+ MY + G +     VF+    +DSV+WN+L + +       +GL  F  
Sbjct: 354 ECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKM 413

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M ++  KP+  TF+++L   S L+D+  G+ +H   IK   +   ++G SL+D+Y K G 
Sbjct: 414 MKMER-KPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGE 472

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++D    F  ++  D+ ++  +I S     +  +  +   +MR EG+  +E T+   L  
Sbjct: 473 MDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPM 532

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           CS +A    G+ +H    K+G   ++ +  AL+ MY+KCGS+++   VFK    +D  +W
Sbjct: 533 CSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTW 592

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
             +I  +  +G G+KAL+AF+ M   G +PD + F+  + ACSH G+++EG + F  +K 
Sbjct: 593 TALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKT 652

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            Y + P ++H+AC++D+L R+G   + E FI    + P+A +W  LL AC   GN  + +
Sbjct: 653 DYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQ 712

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           + ++K+LEL       YV  S+I AT G+W+    VR  + ++G+KKEP  SWIE+
Sbjct: 713 RVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEI 768



 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 154/564 (27%), Positives = 275/564 (48%), Gaps = 16/564 (2%)

Query: 7   VFKSM-PELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSG 65
           VF+S+ P  NV  WN+++     +G   + +  +  M++ + +   F+  +V+   A   
Sbjct: 76  VFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARIL 135

Query: 66  YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT 125
            ++ G +VH  A+ +G   D ++  +L+DMYS+    DNA  VF  + + D V+W ++I+
Sbjct: 136 DLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLIS 195

Query: 126 CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
                G  ++A  +++  R + + P+ F ++S++ A       + G ++H VI K G   
Sbjct: 196 GYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAG 255

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           D ++GN L+SMY +  R+    RVF  +A +DSV+WN +   +      +  +++F  M 
Sbjct: 256 DVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDM- 314

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
           + GF P+M +    ++AC    D+  GK +H + I    + + V    L+DMY K G L 
Sbjct: 315 IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLL 374

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
            A   FD+   KD   + ++I  Y Q+G  +  L+ F+ M++E  K +  T    L+  S
Sbjct: 375 AAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLLLSIFS 433

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
            +A +  GR +H   +K G   ++ +  +L+ +YAKCG +DD   VF   +  D  SWN 
Sbjct: 434 QLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNT 493

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIY 485
           +I   V         +    M  EG +PDE T + +L  CS + +  +GK+    I K  
Sbjct: 494 VIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFK-S 552

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLT--PNALVWENLLGACSWHGNIELDE 543
           G    +     +I++  + G    +EN I   K     + + W  L+ A   +G      
Sbjct: 553 GFESNVPIGNALIEMYSKCG---SLENCIKVFKYMKEKDVVTWTALISAFGMYG------ 603

Query: 544 KDAEKLLELEPKMESNYVFPSDIS 567
            + +K L+    ME + V P  ++
Sbjct: 604 -EGKKALKAFQDMELSGVLPDSVA 626



 Score =  215 bits (547), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 137/475 (28%), Positives = 234/475 (49%), Gaps = 7/475 (1%)

Query: 39  FCS-MKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYS 97
           FCS   +  +   +F  S++LK  +++      + VH++ I  G +L    S  L+  Y+
Sbjct: 6   FCSNFNNTPEPSQEFLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYA 65

Query: 98  KCGLADNALKVFYRIKDPD-VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLT 156
           +     +++ VF  I   + V  W +II  L   G   +A   +  MRE  ++P+ F   
Sbjct: 66  QVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFP 125

Query: 157 SLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ 216
           S++ +     D   G  +H    + GFESD  +GNAL+ MY     +     VFE ++++
Sbjct: 126 SVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNR 185

Query: 217 DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLH 276
           DSVSWN+L S +      +  L ++++  + G  P+  T   +L AC SL  V  G  +H
Sbjct: 186 DSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVH 245

Query: 277 AHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAE 336
               K  + G+ ++G  L+ MY K   L +A   F  +A KD   +  +I  YAQ G  E
Sbjct: 246 GVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHE 305

Query: 337 MALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALV 396
            ++K F  M ++G   +  ++ S +  C     L  G+ +H   + +G   D      L+
Sbjct: 306 ASVKLFMDM-IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILI 364

Query: 397 AMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI 456
            MYAKCG +  A+ VF  +  +D+ +WN +I GY + G  ++ LE+F+MM  E   PD +
Sbjct: 365 DMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMERK-PDSV 423

Query: 457 TFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEI 510
           TFV++LS  S +  I +G+  H   IK  +G    +     ++D+  + G+  ++
Sbjct: 424 TFVLLLSIFSQLADINQGRGIHCDVIK--FGFEAELIIGNSLLDVYAKCGEMDDL 476


>gi|6723387|emb|CAB66396.1| putative protein [Arabidopsis thaliana]
          Length = 1113

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 206/606 (33%), Positives = 330/606 (54%), Gaps = 12/606 (1%)

Query: 4   AKRVFKSMPEL---NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           A+ VF++M      +VVSW+A++  Y  +G     + +F    ++    + +  + V++ 
Sbjct: 116 AEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRA 175

Query: 61  FANSGYIKAGQVVHAMAIRLG-CALDKFLSCSLVDMYSKCGLA-DNALKVFYRIKDPDVV 118
            +NS ++  G+V     ++ G    D  + CSL+DM+ K   + +NA KVF ++ + +VV
Sbjct: 176 CSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVV 235

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            W  +IT   Q G  +EA + F  M  S  + ++F L+S+  A  E  +   G+ +H+  
Sbjct: 236 TWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWA 295

Query: 179 CKYGFESDTLVGNALVSMYME---NGRVSYGSRVFEAIAHQDSVSWNALFSRF-QDYESP 234
            + G   D  V  +LV MY +   +G V    +VF+ +     +SW AL + + ++    
Sbjct: 296 IRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLA 353

Query: 235 DQGLRIFYQMLLKG-FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
            + + +F +M+ +G  +PN  TF    KAC +LSD   GKQ+     K  L  N  V  S
Sbjct: 354 TEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANS 413

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           ++ M+ KS  +EDA  AF+SL+ K+L +Y   +    +    E A K   ++    +  +
Sbjct: 414 VISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVS 473

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
            FT AS L+G + V ++  G  +HS  VK G   +  V  AL++MY+KCGSID A  VF 
Sbjct: 474 AFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFN 533

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
               R+  SW  MI G+ KHG   + LE F  M++EG  P+E+T+V +LSACSH+GL+ E
Sbjct: 534 FMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSE 593

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           G +HF+S+ + + I P ++H+ACM+D+L RAG  T+   FI       + LVW   LGAC
Sbjct: 594 GWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGAC 653

Query: 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPS 593
             H N EL +  A K+LEL+P   + Y+  S+I A  G+W + + +R  +  + + KE  
Sbjct: 654 RVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGG 713

Query: 594 CSWIEV 599
           CSWIEV
Sbjct: 714 CSWIEV 719



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 134/471 (28%), Positives = 231/471 (49%), Gaps = 15/471 (3%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E A +VF  M ELNVV+W  ++    + G  ++ +  F  M     +  KF+LS+V    
Sbjct: 220 ENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSAC 279

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKC---GLADNALKVFYRIKDPDVV 118
           A    +  G+ +H+ AIR G   D  + CSLVDMY+KC   G  D+  KVF R++D  V+
Sbjct: 280 AELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVM 337

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRE----SSVKPNQFVLTSLVRATTETGDQRCGESI 174
           +W A+IT   +   C  A +  NL  E      V+PN F  +S  +A     D R G+ +
Sbjct: 338 SWTALITGYMKN--CNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQV 395

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
                K G  S++ V N+++SM++++ R+    R FE+++ ++ VS+N          + 
Sbjct: 396 LGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNF 455

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
           +Q  ++  ++  +    +  TF  +L   +++  +  G+Q+H+  +K  L  N  V  +L
Sbjct: 456 EQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNAL 515

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           + MY K G ++ A   F+ + N+++ ++T++IT +A+ G A   L+ F +M  EG+K NE
Sbjct: 516 ISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNE 575

Query: 355 FTLASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
            T  + L+ CS V  ++ G R  +S+         M     +V +  + G + DA     
Sbjct: 576 VTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFIN 635

Query: 414 GSALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
               + D   W   +G    H   E    A R +L+    P+E    + LS
Sbjct: 636 TMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELD--PNEPAAYIQLS 684



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 159/607 (26%), Positives = 279/607 (45%), Gaps = 59/607 (9%)

Query: 4   AKRVFKSMP----ELNVVSWNALLNGYAESGDGQ-KVMHLFCSMKDMEKKFSKFSLSTVL 58
           AK   KS P     +NV   + L+  +  +GD +  V  L    +D  +     + S++L
Sbjct: 12  AKLPIKSQPSVSNRINVA--DRLILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLL 69

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF---YRIKDP 115
           K    +   + G++VHA  I      D  L  SL+ +YSK G +  A  VF    R    
Sbjct: 70  KSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKR 129

Query: 116 DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH 175
           DVV+W A++ C    G   +A K+F    E  + PN +  T+++RA + +     G    
Sbjct: 130 DVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTL 189

Query: 176 AVICKYG-FESDTLVGNALVSMYMENGRVSYGS--RVFEAIAHQDSVSWNALFSRFQDYE 232
             + K G FESD  VG +L+ M+++ G  S+ +  +VF+ ++  + V+W  + +R     
Sbjct: 190 GFLMKTGHFESDVCVGCSLIDMFVK-GENSFENAYKVFDKMSELNVVTWTLMITRCMQMG 248

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
            P + +R F  M+L GF+ +  T   +  AC+ L ++  GKQLH+  I+  L  +  V  
Sbjct: 249 FPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VEC 306

Query: 293 SLVDMYDK---SGCLEDAGVAFDSLANKDLFAYTAIITSYAQ-AGEAEMALKCFRKMRLE 348
           SLVDMY K    G ++D    FD + +  + ++TA+IT Y +    A  A+  F +M  +
Sbjct: 307 SLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQ 366

Query: 349 G-IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
           G ++ N FT +S    C  ++    G+ +   A K G   +  V+ ++++M+ K   ++D
Sbjct: 367 GHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMED 426

Query: 408 AEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
           A+  F+  + ++  S+N  + G  ++   E+A +    + +        TF  +LS  ++
Sbjct: 427 AQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVAN 486

Query: 468 MGLIEEGKKHFSSIKKIYGIT---PTIKHFACM------IDILGRAGKFTEIENFITETK 518
           +G I +G++  S + K+ G++   P       M      ID   R   F E  N I+ T 
Sbjct: 487 VGSIRKGEQIHSQVVKL-GLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTS 545

Query: 519 LT-------------------------PNALVWENLLGACSWHGNIELDEKDAEKLLE-- 551
           +                          PN + +  +L ACS  G +    +    + E  
Sbjct: 546 MITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDH 605

Query: 552 -LEPKME 557
            ++PKME
Sbjct: 606 KIKPKME 612



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 97/166 (58%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A+R F+S+ E N+VS+N  L+G   + + ++   L   + + E   S F+ +++L G
Sbjct: 424 MEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSG 483

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            AN G I+ G+ +H+  ++LG + ++ +  +L+ MYSKCG  D A +VF  +++ +V++W
Sbjct: 484 VANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISW 543

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
            ++IT   + G      + FN M E  VKPN+    +++ A +  G
Sbjct: 544 TSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVG 589



 Score = 40.0 bits (92), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 37/70 (52%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A RVF  M   NV+SW +++ G+A+ G   +V+  F  M +   K ++ +   +L  
Sbjct: 525 IDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSA 584

Query: 61  FANSGYIKAG 70
            ++ G +  G
Sbjct: 585 CSHVGLVSEG 594


>gi|449448940|ref|XP_004142223.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 847

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 201/600 (33%), Positives = 309/600 (51%), Gaps = 4/600 (0%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           L+ RVF  M   N+VSWNA++ G+   GD  K + L+ SM     KF   ++  V++  A
Sbjct: 214 LSHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACA 273

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
             G ++ G  +H +AI+     D F+  +L++MYS  G  +++  +F  +   D   W +
Sbjct: 274 EYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNS 333

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC-GESIHAVICKY 181
           +I+     G   EA  +F  MR   +K +   +  ++    +  D    G  +HA   K 
Sbjct: 334 MISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKS 393

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G E D  +GNAL+SMY+++ +++    VFE +   D +SWN + S F       +   +F
Sbjct: 394 GIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELF 453

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
             M     K N  T + +L  C   SD+ FG+ +H   IK+ L+ N  + TSL +MY   
Sbjct: 454 LMMCESEIKFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIKNGLEINTSLNTSLTEMYINC 513

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G    A   F     +DL ++ ++I+SY +   A  AL  F  M  E ++ N  T+ + L
Sbjct: 514 GDERAATNMFTRCPQRDLVSWNSLISSYIKNDNAGKALLLFNHMISE-LEPNSVTIINIL 572

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVS--TALVAMYAKCGSIDDAEAVFKGSALRD 419
             C+ +A L  G+ LH+   +    L+M  S   A + MYA+CG +  AE +F     R 
Sbjct: 573 TSCTQLAHLPLGQCLHAYTTRREVSLEMDASLANAFITMYARCGKLQYAEKIFCTLQTRS 632

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SWN MI GY  HG G  A  AF  MLD+G+ P+ ++F  VLSACSH GL   G + F 
Sbjct: 633 IVSWNAMITGYGMHGRGRDATLAFAQMLDDGFKPNNVSFASVLSACSHSGLTVTGLQLFH 692

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           S+ + +GI P + H+ CM+D+LGR G F+E   FI    + P+A +W  LL +C    N 
Sbjct: 693 SMVRDFGIAPQLTHYGCMVDLLGRGGHFSEAIAFINSMPIEPDASIWRALLSSCQIKSNN 752

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +L E    KL+ELEP    N++  S+I A  G W++   +R  L  +G+ K P  SWI +
Sbjct: 753 KLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEVVQIRKWLRERGLGKPPGTSWIVI 812



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 145/537 (27%), Positives = 264/537 (49%), Gaps = 6/537 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A +VF  MPE ++VSWNAL++GY      ++ + LF  MK      +  ++  +L     
Sbjct: 114 ASKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACGE 173

Query: 64  SGYIKAGQVVHAMAIRLGC-ALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
              ++ GQ +H   +R G   +D ++  +LV  Y +   A  + +VF  +   ++V+W A
Sbjct: 174 MLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRFD-AVLSHRVFSLMLVRNIVSWNA 232

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           IIT     G C +A K+++ M    +K +   +  +++A  E G  R G  +H +  K+ 
Sbjct: 233 IITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQLAIKFN 292

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
             +D  + NAL++MY +NG +     +F A+   D+  WN++ S +  +    + + +F 
Sbjct: 293 LINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALFI 352

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVG-FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
           +M L+  K ++ T  ++L  C+ L+D   +G+ LHAH +K  ++ +  +G +L+ MY K 
Sbjct: 353 KMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKSGIELDAYLGNALLSMYVKH 412

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
             +  A   F+ +   D+ ++  +I+++AQ+     A + F  M    IK N +T+ S L
Sbjct: 413 NQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLL 472

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
             C   + L  GR +H  A+K G  ++  ++T+L  MY  CG    A  +F     RD  
Sbjct: 473 AFCKDGSDLVFGRSIHGFAIKNGLEINTSLNTSLTEMYINCGDERAATNMFTRCPQRDLV 532

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK-KHFSS 480
           SWN +I  Y+K+    KAL  F  M+ E   P+ +T + +L++C+ +  +  G+  H  +
Sbjct: 533 SWNSLISSYIKNDNAGKALLLFNHMISE-LEPNSVTIINILTSCTQLAHLPLGQCLHAYT 591

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
            ++   +          I +  R GK    E     T  T + + W  ++     HG
Sbjct: 592 TRREVSLEMDASLANAFITMYARCGKLQYAEKIFC-TLQTRSIVSWNAMITGYGMHG 647



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 137/449 (30%), Positives = 229/449 (51%), Gaps = 3/449 (0%)

Query: 19  WNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAI 78
           WN+++  + +  +   ++  +  M+ +       ++  VLK       I  G  +H+   
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSFIR 87

Query: 79  RLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAK 138
            L    D  +  +LVD Y KCGL   A KVF  + + D+V+W A+I+      C +EA  
Sbjct: 88  GLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVL 147

Query: 139 IFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG-FESDTLVGNALVSMY 197
           +F  M+++ + PN   + +L+ A  E  + R G+ IH    + G F+ D  VG ALV  Y
Sbjct: 148 LFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFY 207

Query: 198 MENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFI 257
           M    V    RVF  +  ++ VSWNA+ + F +     + L+++  ML++G K +  T +
Sbjct: 208 MRFDAV-LSHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTML 266

Query: 258 VILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK 317
           V+++AC+    +  G QLH   IK +L  +  +  +L++MY  +G LE +   F+++   
Sbjct: 267 VVIQACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTS 326

Query: 318 DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN-GRLL 376
           D   + ++I+SY   G    A+  F KMRLE IK +  T+A  L+ C+ +   +  GR L
Sbjct: 327 DAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGL 386

Query: 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
           H+ A+K+G  LD ++  AL++MY K   I  A+ VF+     D  SWN MI  + +    
Sbjct: 387 HAHAMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFR 446

Query: 437 EKALEAFRMMLDEGYVPDEITFVVVLSAC 465
            KA E F MM +     +  T V +L+ C
Sbjct: 447 AKAFELFLMMCESEIKFNSYTIVSLLAFC 475



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 168/350 (48%), Gaps = 2/350 (0%)

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W +II    +          +  M    + P+   +  +++A         G  IH+ I 
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSFIR 87

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
                +D  VG ALV  Y + G V+  S+VF  +  +D VSWNAL S +       + + 
Sbjct: 88  GLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVL 147

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL-DGNHVVGTSLVDMY 298
           +F +M   G  PN  T + +L AC  + ++  G+++H + +++ L D +  VGT+LV  Y
Sbjct: 148 LFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFY 207

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            +   +    V F  +  +++ ++ AIIT +   G+   ALK +  M +EGIK +  T+ 
Sbjct: 208 MRFDAVLSHRV-FSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTML 266

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
             +  C+    L  G  LH +A+K   + D+F+  AL+ MY+  GS++ + A+F      
Sbjct: 267 VVIQACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTS 326

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
           D A WN MI  Y+  G   +A+  F  M  E    D  T  ++LS C+ +
Sbjct: 327 DAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDL 376



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 135/267 (50%), Gaps = 3/267 (1%)

Query: 218 SVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHA 277
           S  WN++       ++    L  + QM   G  P+  T  ++LKAC  L+ +G G ++H+
Sbjct: 25  SKDWNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHS 84

Query: 278 HTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEM 337
                 L  +  VGT+LVD Y K G + +A   F  +  +DL ++ A+I+ Y      + 
Sbjct: 85  FIRGLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKE 144

Query: 338 ALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL-LDMFVSTALV 396
           A+  F +M+  G+  N  T+ + L  C  +  L  G+ +H   ++ G   +D +V TALV
Sbjct: 145 AVLLFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALV 204

Query: 397 AMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI 456
             Y +  ++  +  VF    +R+  SWN +I G++  G   KAL+ +  ML EG   D +
Sbjct: 205 GFYMRFDAV-LSHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAV 263

Query: 457 TFVVVLSACSHMGLIEEGKK-HFSSIK 482
           T +VV+ AC+  G +  G + H  +IK
Sbjct: 264 TMLVVIQACAEYGCLRLGMQLHQLAIK 290



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 3/164 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+++F ++   ++VSWNA++ GY   G G+     F  M D   K +  S ++VL  
Sbjct: 618 LQYAEKIFCTLQTRSIVSWNAMITGYGMHGRGRDATLAFAQMLDDGFKPNNVSFASVLSA 677

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            ++SG    G Q+ H+M    G A        +VD+  + G    A+     +  +PD  
Sbjct: 678 CSHSGLTVTGLQLFHSMVRDFGIAPQLTHYGCMVDLLGRGGHFSEAIAFINSMPIEPDAS 737

Query: 119 AWGAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRA 161
            W A+++    +   +    IF  L+      P  F+L S + A
Sbjct: 738 IWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYA 781


>gi|449502637|ref|XP_004161700.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 847

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 201/600 (33%), Positives = 309/600 (51%), Gaps = 4/600 (0%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           L+ RVF  M   N+VSWNA++ G+   GD  K + L+ SM     KF   ++  V++  A
Sbjct: 214 LSHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACA 273

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
             G ++ G  +H +AI+     D F+  +L++MYS  G  +++  +F  +   D   W +
Sbjct: 274 EYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNS 333

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC-GESIHAVICKY 181
           +I+     G   EA  +F  MR   +K +   +  ++    +  D    G  +HA   K 
Sbjct: 334 MISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKS 393

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G E D  +GNAL+SMY+++ +++    VFE +   D +SWN + S F       +   +F
Sbjct: 394 GIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELF 453

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
             M     K N  T + +L  C   SD+ FG+ +H   IK+ L+ N  + TSL +MY   
Sbjct: 454 LMMCESEIKFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIKNGLEINTSLNTSLTEMYINC 513

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G    A   F     +DL ++ ++I+SY +   A  AL  F  M  E ++ N  T+ + L
Sbjct: 514 GDERAATNMFTRCPQRDLVSWNSLISSYIKNDNAGKALLLFNHMISE-LEPNSVTIINIL 572

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVS--TALVAMYAKCGSIDDAEAVFKGSALRD 419
             C+ +A L  G+ LH+   +    L+M  S   A + MYA+CG +  AE +F     R 
Sbjct: 573 TSCTQLAHLPLGQCLHAYTTRREVSLEMDASLANAFITMYARCGKLQYAEKIFCTLQTRS 632

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SWN MI GY  HG G  A  AF  MLD+G+ P+ ++F  VLSACSH GL   G + F 
Sbjct: 633 IVSWNAMITGYGMHGRGRDATLAFAQMLDDGFKPNNVSFASVLSACSHSGLTVTGLQLFH 692

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           S+ + +GI P + H+ CM+D+LGR G F+E   FI    + P+A +W  LL +C    N 
Sbjct: 693 SMVRDFGIAPQLTHYGCMVDLLGRGGHFSEAIAFINSMPIEPDASIWRALLSSCQIKSNN 752

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +L E    KL+ELEP    N++  S+I A  G W++   +R  L  +G+ K P  SWI +
Sbjct: 753 KLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEVVQIRKWLRERGLGKPPGTSWIVI 812



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 145/537 (27%), Positives = 264/537 (49%), Gaps = 6/537 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A +VF  MPE ++VSWNAL++GY      ++ + LF  MK      +  ++  +L     
Sbjct: 114 ASKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACGE 173

Query: 64  SGYIKAGQVVHAMAIRLGC-ALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
              ++ GQ +H   +R G   +D ++  +LV  Y +   A  + +VF  +   ++V+W A
Sbjct: 174 MLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRFD-AVLSHRVFSLMLVRNIVSWNA 232

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           IIT     G C +A K+++ M    +K +   +  +++A  E G  R G  +H +  K+ 
Sbjct: 233 IITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQLAIKFN 292

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
             +D  + NAL++MY +NG +     +F A+   D+  WN++ S +  +    + + +F 
Sbjct: 293 LINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALFI 352

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVG-FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
           +M L+  K ++ T  ++L  C+ L+D   +G+ LHAH +K  ++ +  +G +L+ MY K 
Sbjct: 353 KMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKSGIELDAYLGNALLSMYVKH 412

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
             +  A   F+ +   D+ ++  +I+++AQ+     A + F  M    IK N +T+ S L
Sbjct: 413 NQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLL 472

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
             C   + L  GR +H  A+K G  ++  ++T+L  MY  CG    A  +F     RD  
Sbjct: 473 AFCKDGSDLVFGRSIHGFAIKNGLEINTSLNTSLTEMYINCGDERAATNMFTRCPQRDLV 532

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK-KHFSS 480
           SWN +I  Y+K+    KAL  F  M+ E   P+ +T + +L++C+ +  +  G+  H  +
Sbjct: 533 SWNSLISSYIKNDNAGKALLLFNHMISE-LEPNSVTIINILTSCTQLAHLPLGQCLHAYT 591

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
            ++   +          I +  R GK    E     T  T + + W  ++     HG
Sbjct: 592 TRREVSLEMDASLANAFITMYARCGKLQYAEKIFC-TLQTRSIVSWNAMITGYGMHG 647



 Score =  211 bits (538), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 137/449 (30%), Positives = 229/449 (51%), Gaps = 3/449 (0%)

Query: 19  WNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAI 78
           WN+++  + +  +   ++  +  M+ +       ++  VLK       I  G  +H+   
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSCIR 87

Query: 79  RLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAK 138
            L    D  +  +LVD Y KCGL   A KVF  + + D+V+W A+I+      C +EA  
Sbjct: 88  GLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVL 147

Query: 139 IFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG-FESDTLVGNALVSMY 197
           +F  M+++ + PN   + +L+ A  E  + R G+ IH    + G F+ D  VG ALV  Y
Sbjct: 148 LFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFY 207

Query: 198 MENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFI 257
           M    V    RVF  +  ++ VSWNA+ + F +     + L+++  ML++G K +  T +
Sbjct: 208 MRFDAV-LSHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTML 266

Query: 258 VILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK 317
           V+++AC+    +  G QLH   IK +L  +  +  +L++MY  +G LE +   F+++   
Sbjct: 267 VVIQACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTS 326

Query: 318 DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN-GRLL 376
           D   + ++I+SY   G    A+  F KMRLE IK +  T+A  L+ C+ +   +  GR L
Sbjct: 327 DAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGL 386

Query: 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
           H+ A+K+G  LD ++  AL++MY K   I  A+ VF+     D  SWN MI  + +    
Sbjct: 387 HAHAMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFR 446

Query: 437 EKALEAFRMMLDEGYVPDEITFVVVLSAC 465
            KA E F MM +     +  T V +L+ C
Sbjct: 447 AKAFELFLMMCESEIKFNSYTIVSLLAFC 475



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 168/350 (48%), Gaps = 2/350 (0%)

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W +II    +          +  M    + P+   +  +++A         G  IH+ I 
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSCIR 87

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
                +D  VG ALV  Y + G V+  S+VF  +  +D VSWNAL S +       + + 
Sbjct: 88  GLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVL 147

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL-DGNHVVGTSLVDMY 298
           +F +M   G  PN  T + +L AC  + ++  G+++H + +++ L D +  VGT+LV  Y
Sbjct: 148 LFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFY 207

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            +   +    V F  +  +++ ++ AIIT +   G+   ALK +  M +EGIK +  T+ 
Sbjct: 208 MRFDAVLSHRV-FSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTML 266

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
             +  C+    L  G  LH +A+K   + D+F+  AL+ MY+  GS++ + A+F      
Sbjct: 267 VVIQACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTS 326

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
           D A WN MI  Y+  G   +A+  F  M  E    D  T  ++LS C+ +
Sbjct: 327 DAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDL 376



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 135/267 (50%), Gaps = 3/267 (1%)

Query: 218 SVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHA 277
           S  WN++       ++    L  + QM   G  P+  T  ++LKAC  L+ +G G ++H+
Sbjct: 25  SKDWNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHS 84

Query: 278 HTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEM 337
                 L  +  VGT+LVD Y K G + +A   F  +  +DL ++ A+I+ Y      + 
Sbjct: 85  CIRGLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKE 144

Query: 338 ALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL-LDMFVSTALV 396
           A+  F +M+  G+  N  T+ + L  C  +  L  G+ +H   ++ G   +D +V TALV
Sbjct: 145 AVLLFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALV 204

Query: 397 AMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI 456
             Y +  ++  +  VF    +R+  SWN +I G++  G   KAL+ +  ML EG   D +
Sbjct: 205 GFYMRFDAV-LSHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAV 263

Query: 457 TFVVVLSACSHMGLIEEGKK-HFSSIK 482
           T +VV+ AC+  G +  G + H  +IK
Sbjct: 264 TMLVVIQACAEYGCLRLGMQLHQLAIK 290



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 3/164 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+++F ++   ++VSWNA++ GY   G G+     F  M D   K +  S ++VL  
Sbjct: 618 LQYAEKIFCTLQTRSIVSWNAMITGYGMHGRGRDATLAFAQMLDDGFKPNNVSFASVLSA 677

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            ++SG    G Q+ H+M    G A        +VD+  + G    A+     +  +PD  
Sbjct: 678 CSHSGLTVTGLQLFHSMVRDFGIAPQLTHYGCMVDLLGRGGHFSEAIAFINSMPIEPDAS 737

Query: 119 AWGAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRA 161
            W A+++    +   +    IF  L+      P  F+L S + A
Sbjct: 738 IWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYA 781


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 208/610 (34%), Positives = 326/610 (53%), Gaps = 19/610 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKF-----SLSTVL 58
           A ++F  MPE N+VSWN+++  ++++G  ++   L   M + E     F     +L TVL
Sbjct: 241 ALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMME-ENGDGAFMPDVATLVTVL 299

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
              A    I  G+ VH  A++L    +  L+ +L+DMYSKCG   NA  +F    + +VV
Sbjct: 300 PVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVV 359

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRE-----SSVKPNQFVLTSLVRATTETGDQRCGES 173
           +W  ++     +G   +    F+++R+       VK ++  + + V            + 
Sbjct: 360 SWNTMVGGFSAEG---DTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKE 416

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           +H    K  F  + LV NA V+ Y + G +SY  RVF  I  +   SWNAL         
Sbjct: 417 LHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSND 476

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
           P   L    QM + G  P+  T   +L ACS L  +  GK++H   I++ L+ +  V  S
Sbjct: 477 PRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLS 536

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           ++ +Y   G L      FD++ +K L ++  +IT Y Q G  + AL  FR+M L GI+  
Sbjct: 537 VLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLC 596

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL--DMFVSTALVAMYAKCGSIDDAEAV 411
             ++      CS + +L  GR  H+ A+K  HLL  D F++ +L+ MYAK GSI  +  V
Sbjct: 597 GISMMPVFGACSLLPSLRLGREAHAYALK--HLLEDDAFIACSLIDMYAKNGSITQSSKV 654

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F G   + TASWN MI GY  HGL ++A++ F  M   G+ PD++TF+ VL+AC+H GLI
Sbjct: 655 FNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLI 714

Query: 472 EEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFIT-ETKLTPNALVWENLL 530
            EG ++   +K  +G+ P +KH+AC+ID+LGRAG+  +    +  E     +  +W++LL
Sbjct: 715 HEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLL 774

Query: 531 GACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKK 590
            +C  H N+E+ EK A KL ELEP+   NYV  S++ A  G+W D   VR  ++   ++K
Sbjct: 775 SSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRK 834

Query: 591 EPSCSWIEVD 600
           +  CSWIE++
Sbjct: 835 DAGCSWIELN 844



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 123/467 (26%), Positives = 227/467 (48%), Gaps = 31/467 (6%)

Query: 39  FCSMKDMEKKFS-------------------KFSLSTVLKGFANSGYIKAGQVVHAM--- 76
           FC   D++K F                    + +L  +L+       I+ G+ +H +   
Sbjct: 53  FCETGDLDKSFRTVQEFVGDDESSSDAFLLVREALGLLLQASGKRKDIEMGRKIHQLVSG 112

Query: 77  AIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEA 136
           + RL    D  L   ++ MY+ CG  D++  VF  ++  ++  W A+I+   +     E 
Sbjct: 113 STRLRN--DDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEV 170

Query: 137 AKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVS 195
            + F  ++  + + P+ F    +++A     D   G ++H ++ K G   D  VGNALVS
Sbjct: 171 LETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVS 230

Query: 196 MYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK----GFKP 251
            Y  +G V+   ++F+ +  ++ VSWN++   F D    ++   +  +M+ +     F P
Sbjct: 231 FYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMP 290

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF 311
           ++ T + +L  C+   ++G GK +H   +K  LD   V+  +L+DMY K GC+ +A + F
Sbjct: 291 DVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIF 350

Query: 312 DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL--EGIKSNEFTLASCLNGCSPVAT 369
               NK++ ++  ++  ++  G+        R+M    E +K++E T+ + +  C   + 
Sbjct: 351 KMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESF 410

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           L + + LH  ++K   + +  V+ A VA YAKCGS+  A+ VF G   +   SWN +IGG
Sbjct: 411 LPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGG 470

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
           + +      +L+A   M   G +PD  T   +LSACS +  +  GK+
Sbjct: 471 HAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKE 517



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 163/365 (44%), Gaps = 4/365 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A+RVF  +    V SWNAL+ G+A+S D +  +     MK        F++ ++L  
Sbjct: 446 LSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSA 505

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    ++ G+ VH   IR     D F+  S++ +Y  CG       +F  ++D  +V+W
Sbjct: 506 CSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSW 565

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +IT   Q G    A  +F  M    ++     +  +  A +     R G   HA   K
Sbjct: 566 NTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALK 625

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +  E D  +  +L+ MY +NG ++  S+VF  +  + + SWNA+   +  +    + +++
Sbjct: 626 HLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKL 685

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFG-KQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           F +M   G  P+  TF+ +L AC+    +  G + L        L  N      ++DM  
Sbjct: 686 FEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLG 745

Query: 300 KSGCLEDA--GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFT 356
           ++G L+ A   VA +     D+  + ++++S       EM  K   K+  LE  K   + 
Sbjct: 746 RAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYV 805

Query: 357 LASCL 361
           L S L
Sbjct: 806 LLSNL 810


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 193/610 (31%), Positives = 325/610 (53%), Gaps = 14/610 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLF----CSMKDMEKKFSKFSLST 56
           ++ A++VF   P  NV  WN+ L  Y      ++ + LF    C+  +       F++  
Sbjct: 52  LQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAP---DNFTIPI 108

Query: 57  VLKGFANSGYIKAGQVVHAMAIR---LGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
            LK  A    ++ G+V+H  A +   +G   D F+  +LV++YSKCG    ALKVF   +
Sbjct: 109 ALKACAGLRMLELGKVIHGFAKKNDEIGS--DMFVGSALVELYSKCGQMGEALKVFEEFQ 166

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIFNLM-RESSVKPNQFVLTSLVRATTETGDQRCGE 172
            PD V W +++T   Q    +EA  +F+ M     V  +   L S+V A  +  + + G 
Sbjct: 167 RPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGS 226

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
            +H ++ +  F+ D  + N+L+++Y + G     + +F  +  +D +SW+ + + + + E
Sbjct: 227 CVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNE 286

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
           + ++ L +F++M+ K F+PN  T +  L+AC+   ++  GK++H   +    + +  V T
Sbjct: 287 AANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVST 346

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           +L+DMY K  C ++A   F  L  KD+ ++ A+++ YAQ G A  ++  FR M  +GI+ 
Sbjct: 347 ALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQP 406

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
           +   +   L   S +        LH   V++G   ++FV  +L+ +Y+KCGS+ DA  +F
Sbjct: 407 DAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLF 466

Query: 413 KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV-PDEITFVVVLSACSHMGLI 471
           KG  +RD   W+ MI  Y  HG G +ALE F  M+    V P+ +TF+ +LSACSH GL+
Sbjct: 467 KGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLV 526

Query: 472 EEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLG 531
           EEG K F  +   Y + P  +HF  M+D+LGR G+  +  + I    +     VW  LLG
Sbjct: 527 EEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLG 586

Query: 532 ACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
           AC  H NIE+ E  A+ L  L+P     Y+  S+I A  G+W++ + +R  +  +G+KK 
Sbjct: 587 ACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAVDGKWDNVAELRTRIKERGLKKM 646

Query: 592 PSCSWIEVDG 601
              S +EV G
Sbjct: 647 FGQSMVEVRG 656



 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 158/431 (36%), Positives = 237/431 (54%)

Query: 170  CGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
            C +  HA I  YG + D+ +      MY+   R+   S VFE I +  S  WN +   F 
Sbjct: 735  CLKKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFA 794

Query: 230  DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
                    L ++ +M+ KG KP+   F   LK+C+ LSD+  GK +H H +      +  
Sbjct: 795  TDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLF 854

Query: 290  VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
            V  +LVDMY K G +E A + FD +A +DL ++T++I+ YA  G     L  F  MR  G
Sbjct: 855  VDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSG 914

Query: 350  IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
            +  N  ++ S L  C  +  L  G   HS  ++TG   D+ V+TA++ MY+KCGS+D A 
Sbjct: 915  VIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLAR 974

Query: 410  AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
             +F  +A +D   W+ MI  Y  HG G KA++ F  M+  G  P  +TF  VLSACSH G
Sbjct: 975  CLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSG 1034

Query: 470  LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENL 529
            L+EEGK +F  + + + I   + ++ACM+D+LGRAG+ +E  + I    + P+A +W +L
Sbjct: 1035 LLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSL 1094

Query: 530  LGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589
            LGAC  H N++L EK A+ L  L+P     +V  S+I A + RWN+   VR +++ +G  
Sbjct: 1095 LGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGAN 1154

Query: 590  KEPSCSWIEVD 600
            K    S +E D
Sbjct: 1155 KIQGFSLVEYD 1165



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 145/525 (27%), Positives = 252/525 (48%), Gaps = 40/525 (7%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           +H+   + G   D F +  L  +Y+KC     A KVF     P+V  W + +    ++  
Sbjct: 23  LHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQ 82

Query: 133 CQEAAKIFNLMR-ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG-FESDTLVG 190
            +E  ++F+LM   +   P+ F +   ++A         G+ IH    K     SD  VG
Sbjct: 83  WEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVG 142

Query: 191 NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM-LLKGF 249
           +ALV +Y + G++    +VFE     D+V W ++ + +Q    P++ L +F QM ++   
Sbjct: 143 SALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCV 202

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
             +  T + ++ AC+ L +V  G  +H   I+   DG+  +  SL+++Y K+GC + A  
Sbjct: 203 VLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAAN 262

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369
            F  +  KD+ +++ +I  YA    A  AL  F +M  +  + N  T+ S L  C+    
Sbjct: 263 LFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRN 322

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           L  G+ +H IAV  G  LD  VSTAL+ MY KC   D+A  +F+    +D  SW  ++ G
Sbjct: 323 LEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSG 382

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG--------KKHF--- 478
           Y ++G+  K++  FR ML +G  PD +  V +L+A S +G+ ++         +  F   
Sbjct: 383 YAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSN 442

Query: 479 ----SSIKKIY----GITPTIKHFACMI--------------DILGRAGKFTEI-ENFIT 515
               +S+ ++Y     +   +K F  MI               I GR G+  EI +  + 
Sbjct: 443 VFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVK 502

Query: 516 ETKLTPNALVWENLLGACSWHGNIELDEKDAEKLL---ELEPKME 557
            + + PN + + ++L ACS  G +E   K  ++++   +L P  E
Sbjct: 503 NSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSE 547



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 138/264 (52%)

Query: 1    MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
            ++ A  VF+ +P      WN ++ G+A  G     + L+  M +   K  KF+    LK 
Sbjct: 768  IDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKS 827

Query: 61   FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             A    ++ G+V+H   +  GC+ D F+  +LVDMY+KCG  + A  VF ++   D+V+W
Sbjct: 828  CAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSW 887

Query: 121  GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             ++I+     G   E    F+LMR S V PN+  + S++ A    G  R GE  H+ + +
Sbjct: 888  TSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQ 947

Query: 181  YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             GFE D LV  A++ MY + G +     +F+  A +D V W+A+ + +  +    + + +
Sbjct: 948  TGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDL 1007

Query: 241  FYQMLLKGFKPNMCTFIVILKACS 264
            F QM+  G +P+  TF  +L ACS
Sbjct: 1008 FDQMVKAGVRPSHVTFTCVLSACS 1031



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 160/326 (49%), Gaps = 6/326 (1%)

Query: 154 VLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAI 213
           VL  L +A     + R    +H+ + K G   DT     L S+Y +   +    +VF+  
Sbjct: 6   VLVDLFQACN---NGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDET 62

Query: 214 AHQDSVSWNALFSRFQDYESPDQGLRIFYQML-LKGFKPNMCTFIVILKACSSLSDVGFG 272
            H +   WN+    +   +  ++ LR+F+ M+   G  P+  T  + LKAC+ L  +  G
Sbjct: 63  PHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELG 122

Query: 273 KQLHAHTIKHSLDGNHV-VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQ 331
           K +H    K+   G+ + VG++LV++Y K G + +A   F+     D   +T+++T Y Q
Sbjct: 123 KVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQ 182

Query: 332 AGEAEMALKCFRKM-RLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
             + E AL  F +M  ++ +  +  TL S ++ C+ +  +  G  +H + ++     D+ 
Sbjct: 183 NNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLP 242

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
           +  +L+ +YAK G    A  +F     +D  SW+ MI  Y  +    +AL  F  M+++ 
Sbjct: 243 LVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKR 302

Query: 451 YVPDEITFVVVLSACSHMGLIEEGKK 476
           + P+ +T V  L AC+    +EEGKK
Sbjct: 303 FEPNSVTVVSALQACAVSRNLEEGKK 328



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 161/362 (44%), Gaps = 2/362 (0%)

Query: 74   HAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCC 133
            HA     G   D  +      MY      D A  VF  I +P    W  +I      G  
Sbjct: 740  HAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRF 799

Query: 134  QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNAL 193
              + ++++ M E  +KP++F     +++     D + G+ IH  +   G  +D  V  AL
Sbjct: 800  LSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAAL 859

Query: 194  VSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
            V MY + G +     VF+ +A +D VSW ++ S +       + L  F  M   G  PN 
Sbjct: 860  VDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNR 919

Query: 254  CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
             + + +L AC +L  +  G+  H++ I+   + + +V T+++DMY K G L+ A   FD 
Sbjct: 920  VSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDE 979

Query: 314  LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG 373
             A KDL  ++A+I SY   G    A+  F +M   G++ +  T    L+ CS    L  G
Sbjct: 980  TAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEG 1039

Query: 374  RLLHSIAVKTGHLLDMFVSTA-LVAMYAKCGSIDDAEAVFKGSALRDTAS-WNMMIGGYV 431
            ++   +  +   +     + A +V +  + G + +A  + +   +   AS W  ++G   
Sbjct: 1040 KMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACR 1099

Query: 432  KH 433
             H
Sbjct: 1100 IH 1101



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 5/163 (3%)

Query: 372 NGR---LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
           NGR    LHS   KTG L D F +T L ++YAKC S+  A  VF  +   +   WN  + 
Sbjct: 16  NGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLR 75

Query: 429 GYVKHGLGEKALEAFRMML-DEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGI 487
            Y +    E+ L  F +M+   G  PD  T  + L AC+ + ++E GK      KK   I
Sbjct: 76  SYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEI 135

Query: 488 TPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
              +   + ++++  + G+  E      E +  P+ ++W +++
Sbjct: 136 GSDMFVGSALVELYSKCGQMGEALKVFEEFQ-RPDTVLWTSMV 177


>gi|449493401|ref|XP_004159278.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g25970-like [Cucumis
           sativus]
          Length = 704

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 191/600 (31%), Positives = 328/600 (54%), Gaps = 3/600 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A  +F  MP  + VSWN ++ G+   G+ +    +   M+    +  +++  ++LKG A 
Sbjct: 52  ADVLFDEMPMRDSVSWNTMIAGHINCGNLEASWDVLRCMRSCGFELDRYTFGSMLKGIAF 111

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +G    GQ VH++ I++G A + +   +L+DMY+KC   ++A   F  I   + V+W A+
Sbjct: 112 AGMFHLGQQVHSIIIKMGYAENVYAGSALLDMYAKCEKLEDAYLSFLSISKHNTVSWNAM 171

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q G  + A  + + M +   K +      L+    +         +H  I K+G 
Sbjct: 172 INGYAQAGDRETAFWLLDCMEQEGEKVDDGTYAPLLPLLDDADFCNLTSQLHGKIIKHGL 231

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAH-QDSVSWNALFSRFQDYESPDQGLRIFY 242
           E    + NAL++ Y + G +    R+F++ A  +D V+WN+L + +      D   ++  
Sbjct: 232 ELVNTMCNALITSYSKCGSLDDAKRIFDSSAGIRDLVTWNSLLAAYLLRSQEDLAFKLLI 291

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS- 301
            M   GF+P++ ++  I+ AC + +    G+ LH   IK   + +  +  +L+ MY KS 
Sbjct: 292 DMQEHGFEPDLYSYTSIISACFNENISNNGRSLHGLVIKRGFEQSVPISNALISMYLKSD 351

Query: 302 -GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +++A   F+SL  KD  ++ +I+T  +Q G +E A+K F  MR   +  + ++ ++ 
Sbjct: 352 YGSMKEALCIFESLEFKDRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAV 411

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L  CS +AT   G+ +H +A+K G   + FVS++L+ MY+KCG I+DA   F+ ++   +
Sbjct: 412 LRSCSDLATFQLGQQIHVLALKYGLESNEFVSSSLIFMYSKCGIIEDARRSFEEASKNSS 471

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            +WN ++ GY +HG    AL+ F +M  +    D ITFV VL+ACSH+GL+E+G K    
Sbjct: 472 ITWNALMFGYAQHGQCNVALDLFFLMEXKKVKMDHITFVAVLTACSHIGLVEQGCKFLRC 531

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           ++  YG+ P ++H+AC +D+ GR+G+  E +  I E    P+  VW+  LGAC   GNIE
Sbjct: 532 MESDYGVPPRMEHYACAVDLYGRSGRLEEAKALIEEMPFKPDTTVWKTFLGACRSCGNIE 591

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           L  + A  LLE+EP+    YV  S++     RW++ + V+ L+  +G+KK P  SWIEV+
Sbjct: 592 LACQVAGHLLEMEPEEHCTYVLLSNMYGNLMRWDEKAKVKRLMKERGVKKVPGWSWIEVN 651



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 128/471 (27%), Positives = 227/471 (48%), Gaps = 13/471 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A   F S+ + N VSWNA++NGYA++GD +    L   M+   +K    + + +L  
Sbjct: 150 LEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDGTYAPLLPL 209

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD-PDVVA 119
             ++ +      +H   I+ G  L   +  +L+  YSKCG  D+A ++F       D+V 
Sbjct: 210 LDDADFCNLTSQLHGKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFDSSAGIRDLVT 269

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W +++     +     A K+   M+E   +P+ +  TS++ A         G S+H ++ 
Sbjct: 270 WNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNNGRSLHGLVI 329

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSR-----VFEAIAHQDSVSWNALFSRFQDYESP 234
           K GFE    + NAL+SMY+++    YGS      +FE++  +D VSWN++ +      S 
Sbjct: 330 KRGFEQSVPISNALISMYLKS---DYGSMKEALCIFESLEFKDRVSWNSILTGLSQTGSS 386

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
           +  ++ F  M       +  +F  +L++CS L+    G+Q+H   +K+ L+ N  V +SL
Sbjct: 387 EDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLALKYGLESNEFVSSSL 446

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           + MY K G +EDA  +F+  +      + A++  YAQ G+  +AL  F  M  + +K + 
Sbjct: 447 IFMYSKCGIIEDARRSFEEASKNSSITWNALMFGYAQHGQCNVALDLFFLMEXKKVKMDH 506

Query: 355 FTLASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
            T  + L  CS +  +  G + L  +    G    M      V +Y + G +++A+A+ +
Sbjct: 507 ITFVAVLTACSHIGLVEQGCKFLRCMESDYGVPPRMEHYACAVDLYGRSGRLEEAKALIE 566

Query: 414 GSALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
               + DT  W   +G     G  E A +    +L+    P+E    V+LS
Sbjct: 567 EMPFKPDTTVWKTFLGACRSCGNIELACQVAGHLLE--MEPEEHCTYVLLS 615



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 116/475 (24%), Positives = 223/475 (46%), Gaps = 9/475 (1%)

Query: 74  HAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCC 133
           H++A++LG   D +   ++++ Y KC    +A  +F  +   D V+W  +I      G  
Sbjct: 21  HSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNL 80

Query: 134 QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNAL 193
           + +  +   MR    + +++   S+++     G    G+ +H++I K G+  +   G+AL
Sbjct: 81  EASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSAL 140

Query: 194 VSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
           + MY +  ++      F +I+  ++VSWNA+ + +      +    +   M  +G K + 
Sbjct: 141 LDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDD 200

Query: 254 CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
            T+  +L             QLH   IKH L+  + +  +L+  Y K G L+DA   FDS
Sbjct: 201 GTYAPLLPLLDDADFCNLTSQLHGKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFDS 260

Query: 314 LAN-KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
            A  +DL  + +++ +Y    + ++A K    M+  G + + ++  S ++ C       N
Sbjct: 261 SAGIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNN 320

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKC--GSIDDAEAVFKGSALRDTASWNMMIGGY 430
           GR LH + +K G    + +S AL++MY K   GS+ +A  +F+    +D  SWN ++ G 
Sbjct: 321 GRSLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTGL 380

Query: 431 VKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITP 489
            + G  E A+++F  M       D  +F  VL +CS +   + G++ H  ++K  YG+  
Sbjct: 381 SQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLALK--YGLES 438

Query: 490 TIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG--NIELD 542
                + +I +  + G   +      E     +++ W  L+   + HG  N+ LD
Sbjct: 439 NEFVSSSLIFMYSKCGIIEDARRSFEEAS-KNSSITWNALMFGYAQHGQCNVALD 492



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 4/172 (2%)

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           LAN  L HS+AVK G + D++    ++  Y KC  +  A+ +F    +RD+ SWN MI G
Sbjct: 14  LANLLLNHSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAG 73

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITP 489
           ++  G  E + +  R M   G+  D  TF  +L   +  G+   G++  S I K+ G   
Sbjct: 74  HINCGNLEASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKM-GYAE 132

Query: 490 TIKHFACMIDILGRAGKFTEIE-NFITETKLTPNALVWENLLGACSWHGNIE 540
            +   + ++D+  +  K  +   +F++ +K   N + W  ++   +  G+ E
Sbjct: 133 NVYAGSALLDMYAKCEKLEDAYLSFLSISK--HNTVSWNAMINGYAQAGDRE 182


>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
          Length = 864

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 195/596 (32%), Positives = 322/596 (54%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A R F  M E N VSW A + G  ++    + M LF  M+ +    S+ + ++  +  A 
Sbjct: 205 ALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAA 264

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +   + +HA AI+   + D+ +  ++VD+Y+K G   +A + F  +   +V    A+
Sbjct: 265 MPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAM 324

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +  L + G   EA ++F  M  S V  +   L+ +  A  E      G  +H +  K GF
Sbjct: 325 MVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGF 384

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           + D  V NA++ +Y +   +     VF+ +  +DSVSWNA+ +  +  E  +  +    +
Sbjct: 385 DVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNE 444

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           ML  G +P+  T+  +LKAC+ L  + +G  +H   IK  L  +  V +++VDMY K G 
Sbjct: 445 MLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGA 504

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           + +A    D +  ++L ++ +II+ ++   ++E A + F +M   G+K + FT A+ L+ 
Sbjct: 505 ITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDT 564

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +AT+  G+ +H   +K   L D ++S+ LV MYAKCG++ D+  +F+ +   D  SW
Sbjct: 565 CANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKARKLDFVSW 624

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N MI GY  HG G +ALE F  M     VP+  TFV VL ACSH+GL+++G ++F  +  
Sbjct: 625 NAMICGYALHGQGLEALEMFERMQRANVVPNHATFVAVLRACSHVGLLDDGCQYFHLMTS 684

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            Y + P ++HFACM+DILGR+    E   FI    +  +A+VW+ LL  C    ++E+ E
Sbjct: 685 RYKLVPQLEHFACMVDILGRSKGPQEALEFIRSMPIEADAVVWKTLLSICKIRQDVEVAE 744

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
             A  +L L+P   S Y+  S++ A  G+W D S  R L+    ++KEP CSWIEV
Sbjct: 745 TAASNVLRLDPDDASVYILLSNVYAGSGKWVDVSRTRRLMRQGRLRKEPGCSWIEV 800



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 149/564 (26%), Positives = 263/564 (46%), Gaps = 11/564 (1%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           + A  +F +MP+ +VVSWN L++GY + G  +  + L   M        + +L+ +LK  
Sbjct: 102 DTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVALDRTTLAVLLKSC 161

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
                +  G  +HA+A++ G   D     +LVDMY KC   D+AL+ F+ + + + V+WG
Sbjct: 162 GGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMGERNSVSWG 221

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           A I    Q        ++F  M+   +  +Q    S  R+            +HA   K 
Sbjct: 222 AAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTARQLHAHAIKN 281

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
            F SD +VG A+V +Y + G +    R F  + H +  + NA+           + +++F
Sbjct: 282 VFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRTGLGAEAMQLF 341

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
             M   G   ++ +   +  AC+ +     G Q+H   +K   D +  V  +++D+Y K 
Sbjct: 342 QFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVCVRNAILDLYGKC 401

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
             L +A + F  +  +D  ++ AII +  Q    E  +    +M   G++ ++FT  S L
Sbjct: 402 KALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVL 461

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
             C+ + +L  G ++H  A+K+G  LD FVS+ +V MY KCG+I +A+ +      ++  
Sbjct: 462 KACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKLHDRIGGQELV 521

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSS 480
           SWN +I G+      E+A   F  MLD G  PD  T+  VL  C+++  IE GK+ H   
Sbjct: 522 SWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANLATIELGKQIHGQI 581

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           IK+       I   + ++D+  + G   +    + E     + + W  ++   + HG   
Sbjct: 582 IKQEMLGDEYIS--STLVDMYAKCGNMPD-SLLMFEKARKLDFVSWNAMICGYALHGQ-- 636

Query: 541 LDEKDAEKLLELEPKMESNYVFPS 564
                  + LE+  +M+   V P+
Sbjct: 637 -----GLEALEMFERMQRANVVPN 655



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 138/527 (26%), Positives = 241/527 (45%), Gaps = 37/527 (7%)

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLA------------------- 102
           A    +  GQ  HA  +  G     F+S  L+ MY++CG                     
Sbjct: 30  AGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFDTMPHRDTVSWN 89

Query: 103 ------------DNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKP 150
                       D A  +F  + DPDVV+W  +I+   Q G  + +  +   M    V  
Sbjct: 90  TMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVAL 149

Query: 151 NQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF 210
           ++  L  L+++     D   G  IHA+  K G E+D   G+ALV MY +   +    R F
Sbjct: 150 DRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFF 209

Query: 211 EAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVG 270
             +  ++SVSW A  +     E   +G+ +F QM   G   +   +    ++C+++  + 
Sbjct: 210 HGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLS 269

Query: 271 FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
             +QLHAH IK+    + VVGT++VD+Y K+G L DA  AF  L + ++    A++    
Sbjct: 270 TARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLV 329

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
           + G    A++ F+ M   G+  +  +L+   + C+ V     G  +H +AVK+G  +D+ 
Sbjct: 330 RTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVC 389

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
           V  A++ +Y KC ++ +A  VF+    RD+ SWN +I    ++   E  +     ML  G
Sbjct: 390 VRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSG 449

Query: 451 YVPDEITFVVVLSACSHMGLIEEG-KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTE 509
             PD+ T+  VL AC+ +  +E G   H  +IK   G+   +   + ++D+  + G  TE
Sbjct: 450 MEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVS--STVVDMYCKCGAITE 507

Query: 510 IENFITETKLTPNALV-WENLLGACSWHGNIELDEKDAEKLLELEPK 555
            +      ++    LV W +++   S     E  ++   ++L++  K
Sbjct: 508 AQKL--HDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVK 552



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 122/289 (42%), Gaps = 36/289 (12%)

Query: 255 TFIVILKACSSL--SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
           TF  + + C+S   S +  G+  HA  +         V   L+ MY + G    A   FD
Sbjct: 19  TFSHLYQLCASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFD 78

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCF------------------------------ 342
           ++ ++D  ++  ++T+Y  AG+ + A   F                              
Sbjct: 79  TMPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGL 138

Query: 343 -RKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAK 401
             +M   G+  +  TLA  L  C  +  LA G  +H++AVKTG   D+   +ALV MY K
Sbjct: 139 SMEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGK 198

Query: 402 CGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVV 461
           C S+DDA   F G   R++ SW   I G V++    + +E F  M   G    +  +   
Sbjct: 199 CRSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASA 258

Query: 462 LSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTE 509
             +C+ M  +   ++ H  +IK ++     +     ++D+  +AG   +
Sbjct: 259 FRSCAAMPCLSTARQLHAHAIKNVFSSDRVVG--TAIVDVYAKAGNLVD 305


>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Brachypodium distachyon]
          Length = 868

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 204/598 (34%), Positives = 318/598 (53%), Gaps = 1/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A +VF  MPE +V SWN ++ GY ++G  ++ + L+  M     +   ++   VL+    
Sbjct: 148 AWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAGARPDVYTFPCVLRSCGG 207

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G+ VHA  +R G  ++  +  +LV MY+KCG  + A KVF  +   D ++W A+
Sbjct: 208 VPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAARKVFDGMSLTDCISWNAM 267

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    +   C+   ++F  M E  V+PN   +TS+  A+    D    + IHA+  K GF
Sbjct: 268 IAGHFENHECEAGLELFLHMLEDEVEPNLMTITSVTVASGLLSDLDFAKEIHALAVKRGF 327

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            +D    N+L+ MY   GR+     VF  +  +D++SW A+ S ++    PD+ L ++  
Sbjct: 328 ATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGFPDKALEVYAL 387

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M +    P+  T    L AC+SL  +  G +LH            VV  +LV+MY KS  
Sbjct: 388 MEVNNVSPDDVTVASALAACASLGRLDVGIKLHELATSKGFIRYIVVANALVEMYAKSKI 447

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +E A   F  + +KD+ +++++I  +    +   AL  FR M L  +K N  T  + L  
Sbjct: 448 IEKAIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRHM-LADVKPNSVTFIAALAA 506

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+   +L  G+ +H+  ++ G   + +V  AL+ +Y KCG    A A F     +D  SW
Sbjct: 507 CAATGSLRCGKEIHAHVLRQGIASEGYVPNALLDLYVKCGQTGYAWAQFGAHGTKDVVSW 566

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N+M+ G+V HG G+ AL  F  ML+ G  PDE+TFV +L  CS  G++ +G + F S+ +
Sbjct: 567 NIMLAGFVAHGHGDIALSFFNEMLETGEHPDEVTFVALLCGCSRAGMVSQGWELFHSMTE 626

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            Y I P +KH+ACM+D+L R G+ TE  NFI    +TP+A VW  LL  C  H NIEL E
Sbjct: 627 KYSIVPNLKHYACMVDLLSRVGRLTEGYNFINRMPITPDAAVWGALLNGCRIHRNIELGE 686

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
             A+ +LELEP     +V  SD+ A  G W + S VR  +  +G++ +  CSW+EV G
Sbjct: 687 LAAKIVLELEPNDAGYHVLLSDLYADAGMWAEVSKVRKTMRVKGLEHDYGCSWVEVKG 744



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/390 (30%), Positives = 205/390 (52%), Gaps = 3/390 (0%)

Query: 88  LSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESS 147
           L  +++ M  + G   +A KVF ++ + DV +W  ++    + G  +EA  +++ M  + 
Sbjct: 131 LGNAMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAG 190

Query: 148 VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGS 207
            +P+ +    ++R+     D   G  +HA + ++G   +  V NALV+MY + G V    
Sbjct: 191 ARPDVYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAAR 250

Query: 208 RVFEAIAHQDSVSWNALFS-RFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266
           +VF+ ++  D +SWNA+ +  F+++E  + GL +F  ML    +PN+ T   +  A   L
Sbjct: 251 KVFDGMSLTDCISWNAMIAGHFENHEC-EAGLELFLHMLEDEVEPNLMTITSVTVASGLL 309

Query: 267 SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
           SD+ F K++HA  +K     +     SL+ MY   G + +A   F  +  +D  ++TA+I
Sbjct: 310 SDLDFAKEIHALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMI 369

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL 386
           + Y + G  + AL+ +  M +  +  ++ T+AS L  C+ +  L  G  LH +A   G +
Sbjct: 370 SGYEKNGFPDKALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGIKLHELATSKGFI 429

Query: 387 LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM 446
             + V+ ALV MYAK   I+ A  VFK    +D  SW+ MI G+  +    +AL  FR M
Sbjct: 430 RYIVVANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRHM 489

Query: 447 LDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
           L +   P+ +TF+  L+AC+  G +  GK+
Sbjct: 490 LAD-VKPNSVTFIAALAACAATGSLRCGKE 518



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 121/465 (26%), Positives = 226/465 (48%), Gaps = 5/465 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A++VF  M   + +SWNA++ G+ E+ + +  + LF  M + E + +  ++++V   
Sbjct: 246 VEAARKVFDGMSLTDCISWNAMIAGHFENHECEAGLELFLHMLEDEVEPNLMTITSVTVA 305

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 +   + +HA+A++ G A D     SL+ MYS  G    A  VF R++  D ++W
Sbjct: 306 SGLLSDLDFAKEIHALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSW 365

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I+  ++ G   +A +++ LM  ++V P+   + S + A    G    G  +H +   
Sbjct: 366 TAMISGYEKNGFPDKALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGIKLHELATS 425

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GF    +V NALV MY ++  +     VF+ +  +D +SW+++ + F       + L  
Sbjct: 426 KGFIRYIVVANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYY 485

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  ML    KPN  TFI  L AC++   +  GK++HAH ++  +     V  +L+D+Y K
Sbjct: 486 FRHMLAD-VKPNSVTFIAALAACAATGSLRCGKEIHAHVLRQGIASEGYVPNALLDLYVK 544

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G    A   F +   KD+ ++  ++  +   G  ++AL  F +M   G   +E T  + 
Sbjct: 545 CGQTGYAWAQFGAHGTKDVVSWNIMLAGFVAHGHGDIALSFFNEMLETGEHPDEVTFVAL 604

Query: 361 LNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA-EAVFKGSALR 418
           L GCS    ++ G  L HS+  K   + ++     +V + ++ G + +    + +     
Sbjct: 605 LCGCSRAGMVSQGWELFHSMTEKYSIVPNLKHYACMVDLLSRVGRLTEGYNFINRMPITP 664

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           D A W  ++ G   H   E    A +++L+    P++  + V+LS
Sbjct: 665 DAAVWGALLNGCRIHRNIELGELAAKIVLE--LEPNDAGYHVLLS 707


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 192/598 (32%), Positives = 331/598 (55%), Gaps = 8/598 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+  F ++   N  SW ++L  YA++G  +  + L+   K M+ + +    +TVL   A+
Sbjct: 77  ARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLY---KRMDLQPNPVVYTTVLGACAS 133

Query: 64  SGYIKAGQVVHA-MAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
              ++ G+ +H+ ++   G  LD  L  SL+ MY+KCG  ++A ++F R+    V +W A
Sbjct: 134 IKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNA 193

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I    Q G  +EA +++  M    V+P+    TS++ A +  G    G  IHA+I   G
Sbjct: 194 MIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRG 250

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            E D  + NAL++MY     +   +++F+ +  +D VSW+A+ + F + +  D+ +  + 
Sbjct: 251 TELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYS 310

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M L+G +PN  TF  +L AC+S+ D+  G+ +H   + +      V GT+LVD+Y   G
Sbjct: 311 KMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYG 370

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR-LEGIKSNEFTLASCL 361
            L++A   FD + N+D   +T +I  Y++ G     L+ +R+M+    + + +   +  +
Sbjct: 371 SLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVI 430

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           + C+ +   A+ R  HS     G + D  ++T+LV MY++ G+++ A  VF   + RDT 
Sbjct: 431 SACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTL 490

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           +W  +I GY KHG    AL  ++ M  EG  P E+TF+VVL ACSH GL E+GK+ F SI
Sbjct: 491 AWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISI 550

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
           +  Y + P I H++C+ID+L RAG+ ++ E  I    + PN + W +LLGA   H +++ 
Sbjct: 551 QSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKR 610

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
               A ++ +L+P   ++YV  S++ A  G     + VR  + ++G+KK    SWIEV
Sbjct: 611 ATHAAGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEV 668



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 124/446 (27%), Positives = 228/446 (51%), Gaps = 8/446 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E AKR+F+ M   +V SWNA++  YA+SG  ++ + L+   +DM+ + S  + ++VL  
Sbjct: 173 LEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLY---EDMDVEPSVRTFTSVLSA 229

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +N G +  G+ +HA+    G  LD  L  +L+ MY++C   D+A K+F R+   DVV+W
Sbjct: 230 CSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSW 289

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    +     EA + ++ M+   V+PN +   S++ A    GD R G ++H  I  
Sbjct: 290 SAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILG 349

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G++   + G ALV +Y   G +     +F+ I ++D   W  L   +         L +
Sbjct: 350 NGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLEL 409

Query: 241 FYQMLLKGFKP-NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           + +M      P     +  ++ AC+SL      +Q H+      +  + V+ TSLV+MY 
Sbjct: 410 YREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYS 469

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           + G LE A   FD ++++D  A+T +I  YA+ GE  +AL  +++M LEG + +E T   
Sbjct: 470 RWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMV 529

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS--TALVAMYAKCGSIDDAEAVFKGSAL 417
            L  CS       G+ L  I++++ + +   ++  + ++ + ++ G + DAE +     +
Sbjct: 530 VLYACSHAGLQEQGKQLF-ISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPV 588

Query: 418 R-DTASWNMMIGGYVKHGLGEKALEA 442
             +  +W+ ++G    H   ++A  A
Sbjct: 589 EPNDVTWSSLLGASRIHKDVKRATHA 614



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 133/483 (27%), Positives = 243/483 (50%), Gaps = 17/483 (3%)

Query: 87  FLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRES 146
           FL   +V  Y KCG   +A   F  I   +  +WG+++T   Q G  + A  ++  M   
Sbjct: 59  FLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM--- 115

Query: 147 SVKPNQFVLTSLVRATTETGDQRCGESIHAVIC-KYGFESDTLVGNALVSMYMENGRVSY 205
            ++PN  V T+++ A         G++IH+ I    G + D ++ N+L++MY + G +  
Sbjct: 116 DLQPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLED 175

Query: 206 GSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSS 265
             R+FE ++ +   SWNA+ + +      ++ +R++  M     +P++ TF  +L ACS+
Sbjct: 176 AKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSN 232

Query: 266 LSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
           L  +  G+++HA       + +  +  +L+ MY +  CL+DA   F  L  +D+ +++A+
Sbjct: 233 LGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAM 292

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH 385
           I ++A+    + A++ + KM+LEG++ N +T AS L  C+ V  L  GR +H   +  G+
Sbjct: 293 IAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGY 352

Query: 386 LLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRM 445
            + +   TALV +Y   GS+D+A ++F     RD   W ++IGGY K G     LE +R 
Sbjct: 353 KITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYRE 412

Query: 446 MLDEGYVP-DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA 504
           M +   VP  +I +  V+SAC+ +G   + ++  S I+   G+         ++++  R 
Sbjct: 413 MKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEAD-GMISDFVLATSLVNMYSRW 471

Query: 505 GKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564
           G   E    + +   + + L W  L+   + HG   L        L L  +ME     PS
Sbjct: 472 GNL-ESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGL-------ALGLYKEMELEGAEPS 523

Query: 565 DIS 567
           +++
Sbjct: 524 ELT 526



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 107/382 (28%), Positives = 191/382 (50%), Gaps = 18/382 (4%)

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
           ++  +GN +V  Y + G V+     F+AIA ++  SW ++ + +         L ++ +M
Sbjct: 56  ANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM 115

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAH-TIKHSLDGNHVVGTSLVDMYDKSGC 303
            L   +PN   +  +L AC+S+  +  GK +H+  +    L  + ++  SL+ MY K G 
Sbjct: 116 DL---QPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGS 172

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           LEDA   F+ ++ + + ++ A+I +YAQ+G  E A++ +  M +E    +  T  S L+ 
Sbjct: 173 LEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDVE---PSVRTFTSVLSA 229

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           CS +  L  GR +H++    G  LD+ +  AL+ MYA+C  +DDA  +F+    RD  SW
Sbjct: 230 CSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSW 289

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK 482
           + MI  + +  L ++A+E +  M  EG  P+  TF  VL AC+ +G +  G+  H   + 
Sbjct: 290 SAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILG 349

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
             Y I  T+ +   ++D+    G   E  +   + +     L W  L+G  S  G+    
Sbjct: 350 NGYKI--TLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGL-WTVLIGGYSKQGH---- 402

Query: 543 EKDAEKLLELEPKMESNYVFPS 564
                 +LEL  +M++    P+
Sbjct: 403 ---RTGVLELYREMKNTTKVPA 421



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 76/218 (34%), Positives = 122/218 (55%), Gaps = 11/218 (5%)

Query: 260 LKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL 319
           L+ C  L  V   +Q+H   I  +   N  +G  +V  Y K G +  A  AFD++A K+ 
Sbjct: 34  LRQCQDLESV---RQIH-DRISGAASANVFLGNEIVRAYGKCGSVASARAAFDAIARKND 89

Query: 320 FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHS- 378
           +++ +++T+YAQ G    AL  +++M L+    N     + L  C+ +  L  G+ +HS 
Sbjct: 90  YSWGSMLTAYAQNGHYRAALDLYKRMDLQ---PNPVVYTTVLGACASIKALEEGKAIHSR 146

Query: 379 IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEK 438
           I+   G  LD+ +  +L+ MYAKCGS++DA+ +F+  + R  +SWN MI  Y + G  E 
Sbjct: 147 ISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFE- 205

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
             EA R+  D    P   TF  VLSACS++GL+++G+K
Sbjct: 206 --EAIRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRK 241


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 179/599 (29%), Positives = 326/599 (54%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  +F  MPE N V W+A++ GY  +    + + L+  M D     S+ + ++  + 
Sbjct: 221 LDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRS 280

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A     + G  +HA A++     D  +  + +DMY+KC    +A KVF    +P   + 
Sbjct: 281 CAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSH 340

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    +Q    EA +IF  +++S +  ++  L+  + A +       G  +H +  K
Sbjct: 341 NALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAVK 400

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G + +  V N ++ MY + G +     +F+ +  +D+VSWNA+ +  +  E  ++ L +
Sbjct: 401 CGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLAL 460

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  ML    +P+  TF  ++KAC+    + +G ++H   IK  +  +  VG++++DMY K
Sbjct: 461 FVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCK 520

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L +A    + L  +   ++ +II+ ++   + E AL  F +M   G+  + FT A+ 
Sbjct: 521 CGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATV 580

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L+ C+ +AT+  G+ +H   +K     D+++++ +V MY+KCG++ D+  +F+ +  RD 
Sbjct: 581 LDICANLATVELGKQIHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPKRDY 640

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            +W+ MI  Y  HGLGE A++ F  M  +   P+   F+ VL AC+HMG +++G  +F  
Sbjct: 641 VTWSAMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKGLHYFRE 700

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           ++  YG+ P ++H++CM+D+LGR+G+  E    I       + ++W  LLG C   GN+E
Sbjct: 701 MRSHYGLDPQMEHYSCMVDLLGRSGQVNEALELIESMPFEADDVIWRTLLGICRLQGNVE 760

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           + EK A  LL+L+P+  S YV  S++ A  G W + + +R+ + +  +KKEP CSWI+V
Sbjct: 761 VAEKAANSLLQLDPQDSSAYVLLSNVYAIAGMWGEVAKIRSFMKNYKLKKEPGCSWIQV 819



 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 162/551 (29%), Positives = 264/551 (47%), Gaps = 6/551 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A+ +F SMPE +VVSWN++L+ Y ++G  +K + +F  M+ +E +    + + VLK 
Sbjct: 120 MEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKA 179

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                    G  VH +AI++G   D     +LVDMYS C   D+A  +F  + + + V W
Sbjct: 180 CTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCW 239

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    +     E  K++ +M +  +  +Q    S  R+         G  +HA   K
Sbjct: 240 SAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALK 299

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             F  D +VG A + MY +  R+    +VF    +    S NAL   +   +   + L I
Sbjct: 300 TNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEI 359

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  +       +  +    L ACS++     G QLH   +K  LD N  V  +++DMY K
Sbjct: 360 FRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAK 419

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L +A + FD +  KD  ++ AII ++ Q    E  L  F  M    ++ +++T  S 
Sbjct: 420 CGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSV 479

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           +  C+    L  G  +H   +K+G  LD FV +A++ MY KCG + +AE + +    R T
Sbjct: 480 VKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTT 539

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SWN +I G+     GE AL  F  ML  G +PD  T+  VL  C+++  +E GK+    
Sbjct: 540 VSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQ 599

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           I K+  +   +   + ++D+  + G   +    + E     + + W  ++ A ++HG  E
Sbjct: 600 ILKL-QLHSDVYIASTIVDMYSKCGNMQD-SRIMFEKAPKRDYVTWSAMICAYAYHGLGE 657

Query: 541 LDEKDAEKLLE 551
               DA KL E
Sbjct: 658 ----DAIKLFE 664



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 142/549 (25%), Positives = 253/549 (46%), Gaps = 42/549 (7%)

Query: 51  KFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFY 110
           K + S + +  +N   I  G+  HA     G     F+S  L+  Y KC   + A  VF 
Sbjct: 38  KLTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFD 97

Query: 111 RIK-------------------------------DPDVVAWGAIITCLDQQGCCQEAAKI 139
           ++                                + DVV+W ++++C  Q G  +++ +I
Sbjct: 98  KMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEI 157

Query: 140 FNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYME 199
           F  MR   ++ +      +++A T   D   G  +H +  + GF+SD + G ALV MY  
Sbjct: 158 FTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYST 217

Query: 200 NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVI 259
             ++ +   +F  +  ++SV W+A+ + +   +   +GL+++  ML +G   +  TF   
Sbjct: 218 CKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASA 277

Query: 260 LKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL 319
            ++C+ LS    G QLHA+ +K +   +++VGT+ +DMY K   + DA   F++  N   
Sbjct: 278 FRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTR 337

Query: 320 FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSI 379
            ++ A+I  YA+  +   AL+ FR ++   +  +E +L+  L  CS +     G  LH +
Sbjct: 338 QSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGL 397

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
           AVK G   ++ V+  ++ MYAKCG++ +A  +F    ++D  SWN +I  + ++   E+ 
Sbjct: 398 AVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEET 457

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMI 498
           L  F  ML     PD+ TF  V+ AC+    +  G + H   IK   G+   +   + +I
Sbjct: 458 LALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVG--SAII 515

Query: 499 DILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMES 558
           D+  + G   E E  I E       + W +++   S        EK  E  L    +M  
Sbjct: 516 DMYCKCGMLVEAEK-IHERLEERTTVSWNSIISGFS-------SEKQGENALSYFSRMLQ 567

Query: 559 NYVFPSDIS 567
             V P + +
Sbjct: 568 VGVIPDNFT 576



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/391 (28%), Positives = 186/391 (47%), Gaps = 7/391 (1%)

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           + D +  N ++  Y   G + +   +F+++  +D VSWN++ S +       + + IF +
Sbjct: 101 QRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFTK 160

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M L   + +  TF V+LKAC+ + D G G Q+H   I+   D + V GT+LVDMY     
Sbjct: 161 MRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKK 220

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L+ A   F  +  ++   ++A+I  Y +       LK ++ M  EG+  ++ T AS    
Sbjct: 221 LDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRS 280

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ ++    G  LH+ A+KT    D  V TA + MYAKC  + DA  VF         S 
Sbjct: 281 CAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSH 340

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM-GLIEEGKKHFSSIK 482
           N +I GY +     +ALE FR +       DEI+    L+ACS + G +E  + H  ++K
Sbjct: 341 NALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAVK 400

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
              G+   I     ++D+  + G   E    I +     +A+ W  ++ A   + ++E  
Sbjct: 401 --CGLDFNICVANTILDMYAKCGALME-ACLIFDDMEIKDAVSWNAIIAAHEQNEHVE-- 455

Query: 543 EKDAEKLLELEPKME-SNYVFPSDISATQGR 572
           E  A  +  L   ME  +Y F S + A  G+
Sbjct: 456 ETLALFVSMLRSTMEPDDYTFGSVVKACAGK 486



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 58/146 (39%), Gaps = 31/146 (21%)

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
           + + T +     CS +  +  G+  H+    TG +  +FVS  L+  Y KC +++ A  V
Sbjct: 36  TKKLTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNV 95

Query: 412 FKGSALRDTASWNMMIGG-------------------------------YVKHGLGEKAL 440
           F     RD  SWN MI G                               Y+++G   K++
Sbjct: 96  FDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSI 155

Query: 441 EAFRMMLDEGYVPDEITFVVVLSACS 466
           E F  M       D  TF VVL AC+
Sbjct: 156 EIFTKMRLLEIQHDYATFAVVLKACT 181


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  350 bits (899), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 200/631 (31%), Positives = 320/631 (50%), Gaps = 48/631 (7%)

Query: 16  VVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHA 75
           V  WN+L+  Y  +G   K +  FC M  +      ++   V K       ++ G   HA
Sbjct: 92  VYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHA 151

Query: 76  MAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQE 135
           ++   G   + F+  +LV MYS+CG   +A KVF  +   DVV+W +II    + G  + 
Sbjct: 152 LSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKM 211

Query: 136 AAKIFNLM-RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALV 194
           A ++F+ M  E   +P+   L +++      G +  G+  H          +  VGN LV
Sbjct: 212 ALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLV 271

Query: 195 SMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF------------- 241
            MY + G +   + VF  +  +D VSWNA+ + +      +  +R+F             
Sbjct: 272 DMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVV 331

Query: 242 ----------------------YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHT 279
                                  QML  G KPN  T I +L  C+S+  +  GK++H + 
Sbjct: 332 TWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYA 391

Query: 280 IKHSLD-------GNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK--DLFAYTAIITSYA 330
           IK+ +D         ++V   L+DMY K   ++ A   FDSL+ K  D+  +T +I  Y+
Sbjct: 392 IKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYS 451

Query: 331 QAGEAEMALKCFRKMRLEG--IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG-HLL 387
           Q G+A  AL+   +M  E    + N FT++  L  C+ +A L+ G+ +H+ A++   + +
Sbjct: 452 QHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAV 511

Query: 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML 447
            +FVS  L+ MYAKCG I DA  VF     ++  +W  ++ GY  HG GE+AL  F  M 
Sbjct: 512 PLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMR 571

Query: 448 DEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKF 507
             G+  D +T +VVL ACSH G+I++G ++F+ +K  +G++P  +H+AC++D+LGRAG+ 
Sbjct: 572 RIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRL 631

Query: 508 TEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
                 I E  + P  +VW  LL  C  HG +EL E  A+K+ EL    + +Y   S++ 
Sbjct: 632 NAALRLIEEMPMEPPPVVWVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMY 691

Query: 568 ATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           A  GRW D + +R+L+  +GIKK P CSW+E
Sbjct: 692 ANAGRWKDVTRIRSLMRHKGIKKRPGCSWVE 722



 Score =  225 bits (574), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 150/521 (28%), Positives = 236/521 (45%), Gaps = 53/521 (10%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD--VVAWGAII 124
           I   +++H   +  G  L   L+  L+  Y   G   +A+ +  R    D  V  W ++I
Sbjct: 41  ISQVKLIHQKLLSFG-ILTLNLTSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLI 99

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
                 G   +    F LM   S  P+ +    + +A  E    RCG+S HA+    GF 
Sbjct: 100 RSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFM 159

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
           S+  VGNALV+MY   G +S   +VF+ +   D VSWN++   +     P   L +F +M
Sbjct: 160 SNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKM 219

Query: 245 LLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
             + GF+P+  T + +L  C+S+     GKQ H   +   +  N  VG  LVDMY K G 
Sbjct: 220 TNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGM 279

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE--------------- 348
           +++A   F ++  KD+ ++ A++  Y+Q G  E A++ F +M+ E               
Sbjct: 280 MDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISG 339

Query: 349 --------------------GIKSNEFTLASCLNGCSPVATLANGRLLHSIAV------- 381
                               GIK NE TL S L+GC+ V  L +G+ +H  A+       
Sbjct: 340 YAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLR 399

Query: 382 KTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL--RDTASWNMMIGGYVKHGLGEKA 439
           K GH  +  V   L+ MYAKC  +D A A+F   +   RD  +W +MIGGY +HG   KA
Sbjct: 400 KNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKA 459

Query: 440 LEAFRMMLDEG--YVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFAC 496
           LE    M +E     P+  T    L AC+ +  +  GK+ H  +++      P      C
Sbjct: 460 LELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVS-NC 518

Query: 497 MIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           +ID+  + G   +    + +  +  N + W +L+     HG
Sbjct: 519 LIDMYAKCGDIGD-ARLVFDNMMEKNEVTWTSLMTGYGMHG 558



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 114/418 (27%), Positives = 192/418 (45%), Gaps = 48/418 (11%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLKGFA 62
           A++VF  MP  +VVSWN+++  YA+ G  +  + +F  M  +   +    +L  VL   A
Sbjct: 181 ARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCA 240

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           + G    G+  H  A+      + F+   LVDMY+K G+ D A  VF  +   DVV+W A
Sbjct: 241 SVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNA 300

Query: 123 IITCLDQQGCCQEAAKIFNLMRE-----------------------------------SS 147
           ++    Q G  ++A ++F  M+E                                   S 
Sbjct: 301 MVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSG 360

Query: 148 VKPNQFVLTSLVRATTETGDQRCGESIHAVICKY-------GFESDTLVGNALVSMYMEN 200
           +KPN+  L S++      G    G+ IH    KY       G   + +V N L+ MY + 
Sbjct: 361 IKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKC 420

Query: 201 GRVSYGSRVFEAIA--HQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG--FKPNMCTF 256
            +V     +F++++   +D V+W  +   +  +   ++ L +  +M  +    +PN  T 
Sbjct: 421 KKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTI 480

Query: 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGTSLVDMYDKSGCLEDAGVAFDSLA 315
              L AC+SL+ +  GKQ+HA+ +++  +   + V   L+DMY K G + DA + FD++ 
Sbjct: 481 SCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMM 540

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG 373
            K+   +T+++T Y   G  E AL  F +MR  G K +  TL   L  CS    +  G
Sbjct: 541 EKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQG 598



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 124/487 (25%), Positives = 207/487 (42%), Gaps = 70/487 (14%)

Query: 2   ELAKRVFKSMPE----LNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTV 57
           E A R+F+ M E    ++VV+W+A ++GYA+ G G + + +   M     K ++ +L +V
Sbjct: 312 EDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISV 371

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCALDK-------FLSCSLVDMYSKCGLADNALKVFY 110
           L G A+ G +  G+ +H  AI+    L K        +   L+DMY+KC   D A  +F 
Sbjct: 372 LSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFD 431

Query: 111 RI--KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRES--SVKPNQFVLTSLVRATTETG 166
            +  K+ DVV W  +I    Q G   +A ++ + M E     +PN F ++  + A     
Sbjct: 432 SLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLA 491

Query: 167 DQRCGESIHAVICKYGFESDTL-VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALF 225
               G+ IHA   +    +  L V N L+ MY + G +     VF+ +  ++ V+W +L 
Sbjct: 492 ALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLM 551

Query: 226 SRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLD 285
           + +  +   ++ L IF +M   GFK +  T +V+L ACS           H+  I   ++
Sbjct: 552 TGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACS-----------HSGMIDQGME 600

Query: 286 GNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM 345
             + + T             D GV+           Y  ++    +AG    AL+   +M
Sbjct: 601 YFNRMKT-------------DFGVS------PGPEHYACLVDLLGRAGRLNAALRLIEEM 641

Query: 346 RLEGIKSNEFTLASC--LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403
            +E        L SC  ++G   +   A  ++    +   G        T L  MYA  G
Sbjct: 642 PMEPPPVVWVALLSCCRIHGKVELGEYAAKKITELASNNDGSY------TLLSNMYANAG 695

Query: 404 SIDDAEAV-----FKGSALRDTASWNMMIGGYVKHGLGEK----ALEAFRMMLDE----- 449
              D   +      KG   R   SW   I G     +G+K    A E ++++ D      
Sbjct: 696 RWKDVTRIRSLMRHKGIKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLSDHMQRIK 755

Query: 450 --GYVPD 454
             GYVP+
Sbjct: 756 DIGYVPE 762



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 138/303 (45%), Gaps = 8/303 (2%)

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKD--LFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           + L+  Y   GCL  A          D  ++ + ++I SY   G A   L  F  M    
Sbjct: 63  SHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLS 122

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
              + +T       C  ++++  G   H+++  TG + ++FV  ALVAMY++CGS+ DA 
Sbjct: 123 WTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDAR 182

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDE-GYVPDEITFVVVLSACSHM 468
            VF    + D  SWN +I  Y K G  + ALE F  M +E G+ PD+IT V VL  C+ +
Sbjct: 183 KVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASV 242

Query: 469 GLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWEN 528
           G    GK+ F        +   +    C++D+  + G   E  N +       + + W  
Sbjct: 243 GTRSLGKQ-FHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDE-ANTVFSNMPVKDVVSWNA 300

Query: 529 LLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS--ATQGRWNDFSGVRALLSSQ 586
           ++   S  G  E   +  E++ E + KM+    + + IS  A +G   +  GV   + S 
Sbjct: 301 MVAGYSQIGRFEDAVRLFEQMQEEKIKMDV-VTWSAAISGYAQRGLGYEALGVCRQMLSS 359

Query: 587 GIK 589
           GIK
Sbjct: 360 GIK 362



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 115/233 (49%), Gaps = 7/233 (3%)

Query: 1   MELAKRVFKSMP--ELNVVSWNALLNGYAESGDGQKVMHLFCSM--KDMEKKFSKFSLST 56
           +++A+ +F S+   E +VV+W  ++ GY++ GD  K + L   M  +D + + + F++S 
Sbjct: 423 VDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISC 482

Query: 57  VLKGFANSGYIKAGQVVHAMAIR-LGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP 115
            L   A+   +  G+ +HA A+R    A+  F+S  L+DMY+KCG   +A  VF  + + 
Sbjct: 483 ALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEK 542

Query: 116 DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG-ESI 174
           + V W +++T     G  +EA  IF  MR    K +   L  ++ A + +G    G E  
Sbjct: 543 NEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYF 602

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-DSVSWNALFS 226
           + +   +G          LV +    GR++   R+ E +  +   V W AL S
Sbjct: 603 NRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLS 655


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 187/593 (31%), Positives = 327/593 (55%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           VF  +PE N VSW+A++ G  ++    + + LF  M+ +    S+   +++ +  A    
Sbjct: 238 VFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSA 297

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           ++ G+ +H+ A++     D  +  + +DMY+KCG   +A KV   +    + ++ AII  
Sbjct: 298 LRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVG 357

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             +     +A K F L+ ++ +  ++  L+  + A         G  +H +  K    S+
Sbjct: 358 YARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKSISMSN 417

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             V NA++ MY +   ++  S +F+ +  +D+VSWNA+ +  +   + ++ L  F  M+ 
Sbjct: 418 ICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIH 477

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
              +P+  T+  +LKAC+    +  G ++H   IK  +  +  VG +LVDMY K G +E 
Sbjct: 478 SRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEK 537

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A    D    K + ++ AII+ ++   ++E A K F +M   G+  + FT A+ L+ C+ 
Sbjct: 538 ADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCAN 597

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           +AT+  G+ +H+  +K     D+++ + LV MY+KCG++ D++ +F+ +  RD  +WN M
Sbjct: 598 LATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNRDFVTWNAM 657

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           + GY  HGLGE+AL+ F  M      P+  TFV VL AC+HMGL+++G  +F  +   YG
Sbjct: 658 LCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHMGLVDKGLHYFDVMLSEYG 717

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDA 546
           + P  +H++CM+DILGR+G+  E  N + +     +A++W NLL  C  HGN+E+ EK  
Sbjct: 718 LDPQSEHYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWRNLLSVCKIHGNVEVAEKAT 777

Query: 547 EKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
             LL+L+P+  S  V  S+I A  G W + S +R ++    +KKEP CSWIE+
Sbjct: 778 RALLQLDPQDSSACVLLSNIYADAGMWGNVSEMRKMMRHNKLKKEPGCSWIEL 830



 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 152/537 (28%), Positives = 259/537 (48%), Gaps = 2/537 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M++A++ F  MPE +VVSWN++++G+ ++G+ +K + +F  M      F + SL+ VLK 
Sbjct: 131 MDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMGRCGVGFDRASLAVVLKA 190

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                    G  VH + ++ G   D     +L+ MY+KC   D++L VF  + + + V+W
Sbjct: 191 CGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELPEKNWVSW 250

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    Q     E  ++F  M+   V  +Q +  SL R+       R G+ +H+   K
Sbjct: 251 SAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSALRLGKELHSHALK 310

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             F SD +VG A + MY + GR++   +V  ++      S+NA+   +   +   Q L+ 
Sbjct: 311 SAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKS 370

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  +L  G   +  T    L AC+S+     G+Q+H   +K     N  V  +++DMY K
Sbjct: 371 FQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKSISMSNICVANAILDMYGK 430

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
              L +A   FD +  +D  ++ AII +  Q G  E  L  F  M    ++ ++FT  S 
Sbjct: 431 CKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSV 490

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L  C+    L  G  +H+  +K+G   D FV  ALV MY KCG I+ A+ +   +  +  
Sbjct: 491 LKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTM 550

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SWN +I G+      E A + F  ML+ G  PD  T+  VL  C+++  +  GK+  + 
Sbjct: 551 VSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQ 610

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           I K   +   +   + ++D+  + G   +    + E     + + W  +L   + HG
Sbjct: 611 IIK-QELQSDVYICSTLVDMYSKCGNMQD-SQLMFEKAPNRDFVTWNAMLCGYAHHG 665



 Score =  211 bits (537), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 130/463 (28%), Positives = 234/463 (50%), Gaps = 4/463 (0%)

Query: 91  SLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKP 150
           S++  Y+ CG  D A K FY + + DVV+W ++I+   Q G C+++  +F  M    V  
Sbjct: 120 SIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMGRCGVGF 179

Query: 151 NQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF 210
           ++  L  +++A     +   G  +H ++ K+GF+ D + G+AL+ MY +  R+     VF
Sbjct: 180 DRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVF 239

Query: 211 EAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVG 270
             +  ++ VSW+A+ +     +   +GL +F +M   G   +   +  + ++C++LS + 
Sbjct: 240 SELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSALR 299

Query: 271 FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
            GK+LH+H +K +   + +VGT+ +DMY K G + DA     S+    L +Y AII  YA
Sbjct: 300 LGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVGYA 359

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
           ++     ALK F+ +   G+  +E TL+  LN C+ +     GR +H +AVK+  + ++ 
Sbjct: 360 RSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKSISMSNIC 419

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
           V+ A++ MY KC ++ +A  +F     RD  SWN +I    ++G  E+ L  F  M+   
Sbjct: 420 VANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSR 479

Query: 451 YVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTE 509
             PD+ T+  VL AC+    +  G + H   IK   G    +   A ++D+  + G   +
Sbjct: 480 MEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVG--AALVDMYCKCGMIEK 537

Query: 510 IENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLEL 552
            +     T+     + W  ++   S     E   K   ++LE+
Sbjct: 538 ADKIHDRTE-QKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEM 579



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 138/475 (29%), Positives = 227/475 (47%), Gaps = 24/475 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A++V  SMP+ ++ S+NA++ GYA S  G + +  F  +      F + +LS  L  
Sbjct: 333 MADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNA 392

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+      G+ VH +A++     +  ++ +++DMY KC     A  +F  ++  D V+W
Sbjct: 393 CASIRGDLEGRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVSW 452

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            AII   +Q G  +E    F  M  S ++P+ F   S+++A         G  IH  I K
Sbjct: 453 NAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIK 512

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G   D+ VG ALV MY + G +    ++ +    +  VSWNA+ S F   +  +   + 
Sbjct: 513 SGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKF 572

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +ML  G  P+  T+  +L  C++L+ VG GKQ+HA  IK  L  +  + ++LVDMY K
Sbjct: 573 FSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSK 632

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G ++D+ + F+   N+D   + A++  YA  G  E ALK F  M+L  +K N  T  S 
Sbjct: 633 CGNMQDSQLMFEKAPNRDFVTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSV 692

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVS-----------TALVAMYAKCGSIDDAE 409
           L  C+ +  +  G           H  D+ +S           + +V +  + G ID+A 
Sbjct: 693 LRACAHMGLVDKGL----------HYFDVMLSEYGLDPQSEHYSCMVDILGRSGRIDEAL 742

Query: 410 AVFKGSALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
            + +      D   W  ++     HG  E A +A R +L     P + +  V+LS
Sbjct: 743 NLVQKMPFEADAVIWRNLLSVCKIHGNVEVAEKATRALLQ--LDPQDSSACVLLS 795



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 123/468 (26%), Positives = 220/468 (47%), Gaps = 40/468 (8%)

Query: 140 FNLMRESSVKPNQFVLT--SLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMY 197
           F+ + ++  +P   + T   + +  ++      G+  HA +   GFE  T V N L+ MY
Sbjct: 35  FSTLAQNQTQPPAKIRTFSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMY 94

Query: 198 MENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM----------LLK 247
           ++   + Y  +VF+ +  +D VS+N++ S +      D   + FY+M          ++ 
Sbjct: 95  IKCLYLDYACKVFDKMYLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVIS 154

Query: 248 GFKPN---------------------MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDG 286
           GF  N                       +  V+LKAC +L +   G Q+H   +K   D 
Sbjct: 155 GFLQNGECRKSIDVFLEMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDC 214

Query: 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR 346
           + V G++L+ MY K   L+D+   F  L  K+  +++A+I    Q       L+ F++M+
Sbjct: 215 DVVTGSALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQ 274

Query: 347 LEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSID 406
             G+  ++   AS    C+ ++ L  G+ LHS A+K+    D+ V TA + MYAKCG + 
Sbjct: 275 GVGVGVSQSIYASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMA 334

Query: 407 DAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
           DA+ V          S+N +I GY +   G +AL++F+++L  G   DEIT    L+AC+
Sbjct: 335 DAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACA 394

Query: 467 HM-GLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV 525
            + G +E  + H  ++K I      + +   ++D+ G+     E  +     +   +A+ 
Sbjct: 395 SIRGDLEGRQVHGLAVKSISMSNICVAN--AILDMYGKCKALAEASDLFDMME-RRDAVS 451

Query: 526 WENLLGACSWHGNIELDEKDAEKLLELEPKMES-NYVFPSDISATQGR 572
           W  ++ AC  +GN E  E  A     +  +ME  ++ + S + A  GR
Sbjct: 452 WNAIIAACEQNGNEE--ETLAHFASMIHSRMEPDDFTYGSVLKACAGR 497


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 187/598 (31%), Positives = 317/598 (53%), Gaps = 9/598 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F S P  N  +W  ++  +A +G     + LF +M        + +++TVL     
Sbjct: 93  AQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLN---- 148

Query: 64  SGYIKAGQV--VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
              +    V  +H  AI+ G     F+  +L+D Y K GL   A +VF  + D D V + 
Sbjct: 149 ---LPGCTVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYN 205

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           A++    ++G   +A ++F  MR + +    F  +S++           G  +HA++ + 
Sbjct: 206 AMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRS 265

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
               +  V N+L+  Y +   +    R+F+ +  +D+VS+N + + +   +     LR+F
Sbjct: 266 TSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLF 325

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M   GF   +  +  +L    SL DV  GKQ+HA  +   L    ++G +L+DMY K 
Sbjct: 326 REMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKC 385

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G L+ A   F + + K   ++TA+IT Y Q G+ E AL+ F  MR  G++ +  T +S +
Sbjct: 386 GMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSII 445

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
              S +A +  GR LHS  +++G+   +F  + LV MYAKCG +D+A   F     R++ 
Sbjct: 446 KASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSI 505

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SWN +I  Y  +G  + A++ F  ML  G+ PD +TF+ VL+ACSH GL +E  K+F  +
Sbjct: 506 SWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLM 565

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
           K  Y I+P  +H+AC+ID LGR G F++++  + E     + ++W ++L +C  HGN EL
Sbjct: 566 KHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQEL 625

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
               A+KL  +EP   + YV  S+I A  G+W D + V+ ++  +G++KE   SW+E+
Sbjct: 626 ARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEI 683



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 127/501 (25%), Positives = 229/501 (45%), Gaps = 17/501 (3%)

Query: 52  FSLSTVLKGFANSGYI-KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFY 110
           + L+  L+   +SG++ +A  +   M  +   +L+  LS      YS  G    A  +F 
Sbjct: 44  YRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSA-----YSSSGDLPAAQHLFL 98

Query: 111 RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC 170
                +   W  ++      G   +A  +F  M    V P++  +T+++     T     
Sbjct: 99  SSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCT----- 153

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
             S+H    K+G ++   V N L+  Y ++G ++   RVF  +  +D+V++NA+      
Sbjct: 154 VPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSK 213

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
                Q L++F  M   G      TF  IL   + ++ +  G Q+HA  ++ +   N  V
Sbjct: 214 EGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFV 273

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
             SL+D Y K  CL+D    FD +  +D  +Y  II +YA    A   L+ FR+M+  G 
Sbjct: 274 NNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGF 333

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
                  A+ L+    +  +  G+ +H+  V  G   +  +  AL+ MY+KCG +D A++
Sbjct: 334 DRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKS 393

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
            F   + +   SW  +I GYV++G  E+AL+ F  M   G  PD  TF  ++ A S + +
Sbjct: 394 NFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAM 453

Query: 471 IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
           I  G++  S + +  G   ++   + ++D+  + G   E      E     N++ W  ++
Sbjct: 454 IGLGRQLHSYLIR-SGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMP-ERNSISWNAVI 511

Query: 531 GACSWHGNIELDEKDAEKLLE 551
            A + +G    + K+A K+ E
Sbjct: 512 SAYAHYG----EAKNAIKMFE 528



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 91/182 (50%), Gaps = 1/182 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ AK  F +  E + +SW AL+ GY ++G  ++ + LF  M+    +  + + S+++K 
Sbjct: 388 LDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKA 447

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ++   I  G+ +H+  IR G     F    LVDMY+KCG  D AL+ F  + + + ++W
Sbjct: 448 SSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISW 507

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG-DQRCGESIHAVIC 179
            A+I+     G  + A K+F  M      P+     S++ A +  G    C +  H +  
Sbjct: 508 NAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKH 567

Query: 180 KY 181
           +Y
Sbjct: 568 QY 569


>gi|15231402|ref|NP_188004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273848|sp|Q9LRV9.1|PP228_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g13880
 gi|9294611|dbj|BAB02912.1| probable selenium-binding protein [Arabidopsis thaliana]
 gi|332641909|gb|AEE75430.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 748

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 188/607 (30%), Positives = 329/607 (54%), Gaps = 12/607 (1%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
            A+++F  MPE N++S+N+L++GY + G  ++ M LF   ++   K  KF+ +  L    
Sbjct: 100 FARQLFDRMPERNIISFNSLISGYTQMGFYEQAMELFLEAREANLKLDKFTYAGALGFCG 159

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
               +  G+++H + +  G +   FL   L+DMYSKCG  D A+ +F R  + D V+W +
Sbjct: 160 ERCDLDLGELLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCDERDQVSWNS 219

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRA---TTETGDQRCGESIHAVIC 179
           +I+   + G  +E   +   M    +    + L S+++A       G    G +IH    
Sbjct: 220 LISGYVRVGAAEEPLNLLAKMHRDGLNLTTYALGSVLKACCINLNEGFIEKGMAIHCYTA 279

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY-----ESP 234
           K G E D +V  AL+ MY +NG +    ++F  +  ++ V++NA+ S F        E+ 
Sbjct: 280 KLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPSKNVVTYNAMISGFLQMDEITDEAS 339

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
            +  ++F  M  +G +P+  TF V+LKACS+   + +G+Q+HA   K++   +  +G++L
Sbjct: 340 SEAFKLFMDMQRRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQSDEFIGSAL 399

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           +++Y   G  ED    F S + +D+ ++T++I  + Q  + E A   FR++    I+  E
Sbjct: 400 IELYALMGSTEDGMQCFASTSKQDIASWTSMIDCHVQNEQLESAFDLFRQLFSSHIRPEE 459

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS--TALVAMYAKCGSIDDAEAVF 412
           +T++  ++ C+  A L++G  +   A+K+G  +D F S  T+ ++MYAK G++  A  VF
Sbjct: 460 YTVSLMMSACADFAALSSGEQIQGYAIKSG--IDAFTSVKTSSISMYAKSGNMPLANQVF 517

Query: 413 KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE 472
                 D A+++ MI    +HG   +AL  F  M   G  P++  F+ VL AC H GL+ 
Sbjct: 518 IEVQNPDVATYSAMISSLAQHGSANEALNIFESMKTHGIKPNQQAFLGVLIACCHGGLVT 577

Query: 473 EGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
           +G K+F  +K  Y I P  KHF C++D+LGR G+ ++ EN I  +    + + W  LL +
Sbjct: 578 QGLKYFQCMKNDYRINPNEKHFTCLVDLLGRTGRLSDAENLILSSGFQDHPVTWRALLSS 637

Query: 533 CSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEP 592
           C  + +  + ++ AE+L+ELEP+   +YV   +I    G  +    VR L+  +G+KKEP
Sbjct: 638 CRVYKDSVIGKRVAERLMELEPEASGSYVLLHNIYNDSGVNSSAEEVRELMRDRGVKKEP 697

Query: 593 SCSWIEV 599
           + SWI +
Sbjct: 698 ALSWIVI 704



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 147/578 (25%), Positives = 268/578 (46%), Gaps = 47/578 (8%)

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           A SG +  G++ H   I+       +L  +L++MY KC     A ++F R+ + +++++ 
Sbjct: 58  AKSGSVVLGKLAHGHMIKSSLNPCLYLLNNLLNMYCKCRELGFARQLFDRMPERNIISFN 117

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           ++I+   Q G  ++A ++F   RE+++K ++F     +    E  D   GE +H ++   
Sbjct: 118 SLISGYTQMGFYEQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLGELLHGLVVVN 177

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G      + N L+ MY + G++     +F+    +D VSWN+L S +    + ++ L + 
Sbjct: 178 GLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCDERDQVSWNSLISGYVRVGAAEEPLNLL 237

Query: 242 YQMLLKGFKPNMCTFIV--ILKACSSLSDVGF---GKQLHAHTIKHSLDGNHVVGTSLVD 296
            +M   G   N+ T+ +  +LKAC    + GF   G  +H +T K  ++ + VV T+L+D
Sbjct: 238 AKMHRDGL--NLTTYALGSVLKACCINLNEGFIEKGMAIHCYTAKLGMEFDIVVRTALLD 295

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGE-----AEMALKCFRKMRLEGIK 351
           MY K+G L++A   F  + +K++  Y A+I+ + Q  E     +  A K F  M+  G++
Sbjct: 296 MYAKNGSLKEAIKLFSLMPSKNVVTYNAMISGFLQMDEITDEASSEAFKLFMDMQRRGLE 355

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            +  T +  L  CS   TL  GR +H++  K     D F+ +AL+ +YA  GS +D    
Sbjct: 356 PSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQSDEFIGSALIELYALMGSTEDGMQC 415

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F  ++ +D ASW  MI  +V++   E A + FR +      P+E T  +++SAC+    +
Sbjct: 416 FASTSKQDIASWTSMIDCHVQNEQLESAFDLFRQLFSSHIRPEEYTVSLMMSACADFAAL 475

Query: 472 EEGKK-----------HFSSIKK-------------------IYGITPTIKHFACMIDIL 501
             G++            F+S+K                    I    P +  ++ MI  L
Sbjct: 476 SSGEQIQGYAIKSGIDAFTSVKTSSISMYAKSGNMPLANQVFIEVQNPDVATYSAMISSL 535

Query: 502 GRAGKFTEIENFITETK---LTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMES 558
            + G   E  N     K   + PN   +  +L AC  HG +        + ++ + ++  
Sbjct: 536 AQHGSANEALNIFESMKTHGIKPNQQAFLGVLIACC-HGGLVTQGLKYFQCMKNDYRINP 594

Query: 559 NYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSW 596
           N    + +    GR    S    L+ S G +  P  +W
Sbjct: 595 NEKHFTCLVDLLGRTGRLSDAENLILSSGFQDHP-VTW 631



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 127/460 (27%), Positives = 219/460 (47%), Gaps = 17/460 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  +F    E + VSWN+L++GY   G  ++ ++L   M       + ++L +VLK 
Sbjct: 199 LDQAMSLFDRCDERDQVSWNSLISGYVRVGAAEEPLNLLAKMHRDGLNLTTYALGSVLKA 258

Query: 61  FA---NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
                N G+I+ G  +H    +LG   D  +  +L+DMY+K G    A+K+F  +   +V
Sbjct: 259 CCINLNEGFIEKGMAIHCYTAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPSKNV 318

Query: 118 VAWGAIITCLDQQG-----CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172
           V + A+I+   Q          EA K+F  M+   ++P+    + +++A +       G 
Sbjct: 319 VTYNAMISGFLQMDEITDEASSEAFKLFMDMQRRGLEPSPSTFSVVLKACSAAKTLEYGR 378

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
            IHA+ICK  F+SD  +G+AL+ +Y   G    G + F + + QD  SW ++       E
Sbjct: 379 QIHALICKNNFQSDEFIGSALIELYALMGSTEDGMQCFASTSKQDIASWTSMIDCHVQNE 438

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
             +    +F Q+     +P   T  +++ AC+  + +  G+Q+  + IK  +D    V T
Sbjct: 439 QLESAFDLFRQLFSSHIRPEEYTVSLMMSACADFAALSSGEQIQGYAIKSGIDAFTSVKT 498

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           S + MY KSG +  A   F  + N D+  Y+A+I+S AQ G A  AL  F  M+  GIK 
Sbjct: 499 SSISMYAKSGNMPLANQVFIEVQNPDVATYSAMISSLAQHGSANEALNIFESMKTHGIKP 558

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS--TALVAMYAKCGSIDDAEA 410
           N+      L  C     +  G L +   +K  + ++      T LV +  + G + DAE 
Sbjct: 559 NQQAFLGVLIACCHGGLVTQG-LKYFQCMKNDYRINPNEKHFTCLVDLLGRTGRLSDAEN 617

Query: 411 VFKGSALRD-TASWNMMIGG---YVKHGLGEKALEAFRMM 446
           +   S  +D   +W  ++     Y    +G++  E  R+M
Sbjct: 618 LILSSGFQDHPVTWRALLSSCRVYKDSVIGKRVAE--RLM 655



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 121/257 (47%), Gaps = 4/257 (1%)

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
           + ++ +  +    V  GK  H H IK SL+    +  +L++MY K   L  A   FD + 
Sbjct: 50  YKILFQTAAKSGSVVLGKLAHGHMIKSSLNPCLYLLNNLLNMYCKCRELGFARQLFDRMP 109

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRL 375
            +++ ++ ++I+ Y Q G  E A++ F + R   +K ++FT A  L  C     L  G L
Sbjct: 110 ERNIISFNSLISGYTQMGFYEQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLGEL 169

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           LH + V  G    +F+   L+ MY+KCG +D A ++F     RD  SWN +I GYV+ G 
Sbjct: 170 LHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCDERDQVSWNSLISGYVRVGA 229

Query: 436 GEKALEAFRMMLDEGYVPDEITFVVVLSACS---HMGLIEEGKKHFSSIKKIYGITPTIK 492
            E+ L     M  +G          VL AC    + G IE+G        K+ G+   I 
Sbjct: 230 AEEPLNLLAKMHRDGLNLTTYALGSVLKACCINLNEGFIEKGMAIHCYTAKL-GMEFDIV 288

Query: 493 HFACMIDILGRAGKFTE 509
               ++D+  + G   E
Sbjct: 289 VRTALLDMYAKNGSLKE 305


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 186/597 (31%), Positives = 315/597 (52%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F ++P+ + V WN +LNGY ++GD    + +F  M+  E K +  + + VL   A+
Sbjct: 112 AQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCAS 171

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G  +H +A+  G  LD  ++ +L+ MYSKC     A K+F      D+V+W  I
Sbjct: 172 EAMLDLGTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGI 231

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   Q G   EA  +F  M  + +KP+     S +    E    +  + IH  I ++  
Sbjct: 232 ISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAV 291

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D  + +AL+ +Y +   V    ++    +  D+V    + S +       + L  F  
Sbjct: 292 VLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRW 351

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           ++ +  KP   TF  I  A + L+ +  GK+LH   IK  LD    VG++++DMY K G 
Sbjct: 352 LVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGR 411

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L+ A   F+ +  KD   + ++ITS +Q G    A+  FR+M +EG + +  +++  L+ 
Sbjct: 412 LDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSA 471

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +  L  G+ +H + +K     D++  ++L+ MYAKCG+++ +  VF     R+  SW
Sbjct: 472 CANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEVSW 531

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I  Y  HG  ++ L  F  ML  G  PD +TF+ ++SAC H G ++EG +++  + +
Sbjct: 532 NSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTE 591

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            YGI   ++H+AC+ D+ GRAG+  E    I      P+A VW  LLGAC  HGN+EL E
Sbjct: 592 EYGIPARMEHYACVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAE 651

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
             ++ L +L+P     YV  +++ A  G+W     VR+++  +G++K P  SWIEV+
Sbjct: 652 VASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKERGVRKVPGYSWIEVN 708



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 126/446 (28%), Positives = 218/446 (48%), Gaps = 8/446 (1%)

Query: 95  MYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFV 154
           MY + G   +A  +FY ++     AW  +I      G    A   +  M  + V P+++ 
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 155 LTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA 214
              +V+A       + G+ +H  +   G + D  VG++L+ +Y ENG +S    +F+ I 
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 215 HQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ 274
            +DSV WN + + +         ++IF +M     KPN  TF  +L  C+S + +  G Q
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 275 LHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGE 334
           LH   +   L+ +  V  +L+ MY K  CL+ A   FD+    DL ++  II+ Y Q G 
Sbjct: 181 LHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGL 240

Query: 335 AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA 394
              A   FR M   GIK +  T AS L   + + +L + + +H   ++   +LD+F+ +A
Sbjct: 241 MGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSA 300

Query: 395 LVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD 454
           L+ +Y KC  ++ A+ +   S+  DT     MI GYV +G  ++ALEAFR ++ E   P 
Sbjct: 301 LIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPT 360

Query: 455 EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKF---TEIE 511
            +TF  +  A + +  +  GK+   SI K   +       + ++D+  + G+      + 
Sbjct: 361 SVTFSSIFPAFAGLAALNLGKELHGSIIKT-KLDEKCHVGSAILDMYAKCGRLDLACRVF 419

Query: 512 NFITETKLTPNALVWENLLGACSWHG 537
           N ITE     +A+ W +++ +CS +G
Sbjct: 420 NRITEK----DAICWNSMITSCSQNG 441



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 143/565 (25%), Positives = 251/565 (44%), Gaps = 11/565 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AK +F ++      +WN ++ G+   G     +  +  M        K++   V+K    
Sbjct: 11  AKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFPYVVKACCG 70

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +K G++VH     +G   D F+  SL+ +Y++ G   +A  +F  I   D V W  +
Sbjct: 71  LKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVM 130

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    + G    A KIF  MR S +KPN      ++           G  +H +    G 
Sbjct: 131 LNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVSCGL 190

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E D+ V N L++MY +   +    ++F+     D VSWN + S +       +   +F  
Sbjct: 191 ELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRG 250

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M+  G KP+  TF   L   + L  +   K++H + I+H++  +  + ++L+D+Y K   
Sbjct: 251 MISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRD 310

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +E A       ++ D    T +I+ Y   G+ + AL+ FR +  E +K    T +S    
Sbjct: 311 VEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPA 370

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
            + +A L  G+ LH   +KT       V +A++ MYAKCG +D A  VF     +D   W
Sbjct: 371 FAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICW 430

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK 482
           N MI    ++G   +A+  FR M  EG   D ++    LSAC+++  +  GK+ H   IK
Sbjct: 431 NSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIK 490

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
               +   +   + +ID+  + G        + +     N + W +++ A   HG     
Sbjct: 491 G--PLRSDLYAESSLIDMYAKCGNLN-FSRRVFDRMQERNEVSWNSIISAYGNHG----- 542

Query: 543 EKDAEKLLELEPKMESNYVFPSDIS 567
             D ++ L L  +M  N + P  ++
Sbjct: 543 --DLKECLALFHEMLRNGIQPDHVT 565



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 115/450 (25%), Positives = 211/450 (46%), Gaps = 2/450 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+++F + P+ ++VSWN +++GY ++G   +  HLF  M     K    + ++ L  
Sbjct: 210 LQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPC 269

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 +K  + +H   IR    LD FL  +L+D+Y KC   + A K+  +    D V  
Sbjct: 270 VNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVC 329

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+     G  +EA + F  + +  +KP     +S+  A         G+ +H  I K
Sbjct: 330 TTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIK 389

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              +    VG+A++ MY + GR+    RVF  I  +D++ WN++ +       P + + +
Sbjct: 390 TKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINL 449

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QM ++G + +  +    L AC++L  + +GK++H   IK  L  +    +SL+DMY K
Sbjct: 450 FRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAK 509

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L  +   FD +  ++  ++ +II++Y   G+ +  L  F +M   GI+ +  T    
Sbjct: 510 CGNLNFSRRVFDRMQERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGI 569

Query: 361 LNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA-EAVFKGSALR 418
           ++ C     +  G R  H +  + G    M     +  M+ + G +D+A E +       
Sbjct: 570 ISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLDEAFETINSMPFPP 629

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
           D   W  ++G    HG  E A  A + + D
Sbjct: 630 DAGVWGTLLGACHIHGNVELAEVASKHLFD 659


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 187/601 (31%), Positives = 318/601 (52%), Gaps = 9/601 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A+ +F S P  N  +W  ++  +A +G     + LF +M        + +++TVL  
Sbjct: 90  LPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLN- 148

Query: 61  FANSGYIKAGQV--VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
                 +    V  +H  AI+ G     F+  +L+D Y K GL   A +VF  + D D V
Sbjct: 149 ------LPGCTVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAV 202

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            + A++    ++G   +A ++F  MR + +    F  +S++           G  +HA++
Sbjct: 203 TYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALV 262

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            +     +  V N+L+  Y +   +    R+F+ +  +D+VS+N + + +   +     L
Sbjct: 263 LRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVL 322

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           R+F +M   GF   +  +  +L    SL DV  GKQ+HA  +   L    ++G +L+DMY
Sbjct: 323 RLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMY 382

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G L+ A   F + + K   ++TA+IT Y Q G+ E AL+ F  MR  G++ +  T +
Sbjct: 383 SKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFS 442

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S +   S +A +  GR LHS  +++G+   +F  + LV MYAKCG +D+A   F     R
Sbjct: 443 SIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPER 502

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           ++ SWN +I  Y  +G  + A++ F  ML  G+ PD +TF+ VL+ACSH GL +E  K+F
Sbjct: 503 NSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYF 562

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
             +K  Y I+P  +H+AC+ID LGR G F++++  + E     + ++W ++L +C  HGN
Sbjct: 563 HLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGN 622

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
            EL    A+KL  +EP   + YV  S+I A  G+W D + V+ ++  +G++KE   SW+E
Sbjct: 623 QELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVE 682

Query: 599 V 599
           +
Sbjct: 683 I 683



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 127/501 (25%), Positives = 229/501 (45%), Gaps = 17/501 (3%)

Query: 52  FSLSTVLKGFANSGYI-KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFY 110
           + L+  L+   +SG++ +A  +   M  +   +L+  LS      YS  G    A  +F 
Sbjct: 44  YRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSA-----YSSSGDLPAAQHLFL 98

Query: 111 RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC 170
                +   W  ++      G   +A  +F  M    V P++  +T+++     T     
Sbjct: 99  SSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCT----- 153

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
             S+H    K+G ++   V N L+  Y ++G ++   RVF  +  +D+V++NA+      
Sbjct: 154 VPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSK 213

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
                Q L++F  M   G      TF  IL   + ++ +  G Q+HA  ++ +   N  V
Sbjct: 214 EGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFV 273

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
             SL+D Y K  CL+D    FD +  +D  +Y  II +YA    A   L+ FR+M+  G 
Sbjct: 274 NNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGF 333

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
                  A+ L+    +  +  G+ +H+  V  G   +  +  AL+ MY+KCG +D A++
Sbjct: 334 DRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKS 393

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
            F   + +   SW  +I GYV++G  E+AL+ F  M   G  PD  TF  ++ A S + +
Sbjct: 394 NFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAM 453

Query: 471 IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
           I  G++  S + +  G   ++   + ++D+  + G   E      E     N++ W  ++
Sbjct: 454 IGLGRQLHSYLIR-SGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMP-ERNSISWNAVI 511

Query: 531 GACSWHGNIELDEKDAEKLLE 551
            A + +G    + K+A K+ E
Sbjct: 512 SAYAHYG----EAKNAIKMFE 528


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 208/610 (34%), Positives = 326/610 (53%), Gaps = 19/610 (3%)

Query: 4    AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKF-----SLSTVL 58
            A ++F  MPE N+VSWN+++  ++++G  ++   L   M + E     F     +L TVL
Sbjct: 596  ALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMME-ENGDGAFMPDVATLVTVL 654

Query: 59   KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
               A    I  G+ VH  A++L    +  L+ +L+DMYSKCG   NA  +F    + +VV
Sbjct: 655  PVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVV 714

Query: 119  AWGAIITCLDQQGCCQEAAKIFNLMRE-----SSVKPNQFVLTSLVRATTETGDQRCGES 173
            +W  ++     +G   +    F+++R+       VK ++  + + V            + 
Sbjct: 715  SWNTMVGGFSAEG---DTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKE 771

Query: 174  IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
            +H    K  F  + LV NA V+ Y + G +SY  RVF  I  +   SWNAL         
Sbjct: 772  LHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSND 831

Query: 234  PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
            P   L    QM + G  P+  T   +L ACS L  +  GK++H   I++ L+ +  V  S
Sbjct: 832  PRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLS 891

Query: 294  LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
            ++ +Y   G L      FD++ +K L ++  +IT Y Q G  + AL  FR+M L GI+  
Sbjct: 892  VLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLC 951

Query: 354  EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL--DMFVSTALVAMYAKCGSIDDAEAV 411
              ++      CS + +L  GR  H+ A+K  HLL  D F++ +L+ MYAK GSI  +  V
Sbjct: 952  GISMMPVFGACSLLPSLRLGREAHAYALK--HLLEDDAFIACSLIDMYAKNGSITQSSKV 1009

Query: 412  FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
            F G   + TASWN MI GY  HGL ++A++ F  M   G+ PD++TF+ VL+AC+H GLI
Sbjct: 1010 FNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLI 1069

Query: 472  EEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFIT-ETKLTPNALVWENLL 530
             EG ++   +K  +G+ P +KH+AC+ID+LGRAG+  +    +  E     +  +W++LL
Sbjct: 1070 HEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLL 1129

Query: 531  GACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKK 590
             +C  H N+E+ EK A KL ELEP+   NYV  S++ A  G+W D   VR  ++   ++K
Sbjct: 1130 SSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRK 1189

Query: 591  EPSCSWIEVD 600
            +  CSWIE++
Sbjct: 1190 DAGCSWIELN 1199



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 123/467 (26%), Positives = 227/467 (48%), Gaps = 31/467 (6%)

Query: 39  FCSMKDMEKKFS-------------------KFSLSTVLKGFANSGYIKAGQVVHAM--- 76
           FC   D++K F                    + +L  +L+       I+ G+ +H +   
Sbjct: 408 FCETGDLDKSFRTVQEFVGDDESSSDAFLLVREALGLLLQASGKRKDIEMGRKIHQLVSG 467

Query: 77  AIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEA 136
           + RL    D  L   ++ MY+ CG  D++  VF  ++  ++  W A+I+   +     E 
Sbjct: 468 STRLRN--DDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEV 525

Query: 137 AKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVS 195
            + F  ++  + + P+ F    +++A     D   G ++H ++ K G   D  VGNALVS
Sbjct: 526 LETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVS 585

Query: 196 MYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK----GFKP 251
            Y  +G V+   ++F+ +  ++ VSWN++   F D    ++   +  +M+ +     F P
Sbjct: 586 FYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMP 645

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF 311
           ++ T + +L  C+   ++G GK +H   +K  LD   V+  +L+DMY K GC+ +A + F
Sbjct: 646 DVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIF 705

Query: 312 DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL--EGIKSNEFTLASCLNGCSPVAT 369
               NK++ ++  ++  ++  G+        R+M    E +K++E T+ + +  C   + 
Sbjct: 706 KMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESF 765

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           L + + LH  ++K   + +  V+ A VA YAKCGS+  A+ VF G   +   SWN +IGG
Sbjct: 766 LPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGG 825

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
           + +      +L+A   M   G +PD  T   +LSACS +  +  GK+
Sbjct: 826 HAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKE 872



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 163/365 (44%), Gaps = 4/365 (1%)

Query: 1    MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
            +  A+RVF  +    V SWNAL+ G+A+S D +  +     MK        F++ ++L  
Sbjct: 801  LSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSA 860

Query: 61   FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +    ++ G+ VH   IR     D F+  S++ +Y  CG       +F  ++D  +V+W
Sbjct: 861  CSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSW 920

Query: 121  GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
              +IT   Q G    A  +F  M    ++     +  +  A +     R G   HA   K
Sbjct: 921  NTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALK 980

Query: 181  YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            +  E D  +  +L+ MY +NG ++  S+VF  +  + + SWNA+   +  +    + +++
Sbjct: 981  HLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKL 1040

Query: 241  FYQMLLKGFKPNMCTFIVILKACSSLSDVGFG-KQLHAHTIKHSLDGNHVVGTSLVDMYD 299
            F +M   G  P+  TF+ +L AC+    +  G + L        L  N      ++DM  
Sbjct: 1041 FEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLG 1100

Query: 300  KSGCLEDA--GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFT 356
            ++G L+ A   VA +     D+  + ++++S       EM  K   K+  LE  K   + 
Sbjct: 1101 RAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYV 1160

Query: 357  LASCL 361
            L S L
Sbjct: 1161 LLSNL 1165


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 196/562 (34%), Positives = 293/562 (52%), Gaps = 34/562 (6%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDM--YSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
           +H+  I+ G    +F    L++    S  G    AL +F  I+ P+   W  +I      
Sbjct: 51  IHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLS 110

Query: 131 GCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVG 190
                A   +  M    V+PN +    L+++  + G  + G+ IH  + K G ESD  V 
Sbjct: 111 SSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVH 170

Query: 191 NALVSMYMENGRVSYGS-------------------------------RVFEAIAHQDSV 219
            +L++MY +NG + Y                                 R+FE I  +D+V
Sbjct: 171 TSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAV 230

Query: 220 SWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHT 279
           SWNA+ + +      ++ L  F +M      PN  T + +L AC+    +  G  + +  
Sbjct: 231 SWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWI 290

Query: 280 IKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMAL 339
             H L  N  +  +L+DMY K G L+ A   F+ +  KD+ ++  +I  Y+     + AL
Sbjct: 291 EDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEAL 350

Query: 340 KCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHS-IAVKTGHLLDMFVSTALVAM 398
             FRKM+   ++ N+ T  S L  C+ +  L  G+ +H+ I  K   L +  + T+L+ M
Sbjct: 351 ALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDM 410

Query: 399 YAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITF 458
           YAKCG+I+ A+ VF G   +   SWN MI G   HG    ALE FR M DEG+ PD+ITF
Sbjct: 411 YAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITF 470

Query: 459 VVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK 518
           V VLSACSH GL+E G++ FSS+ + Y I+P ++H+ CMID+LGRAG F E E  +   +
Sbjct: 471 VGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNME 530

Query: 519 LTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSG 578
           + P+  +W +LLGAC  HGN+EL E  A+ L ELEP+    YV  S+I AT GRW+D + 
Sbjct: 531 MKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVAR 590

Query: 579 VRALLSSQGIKKEPSCSWIEVD 600
           +R  L+ +G+KK P CS IEVD
Sbjct: 591 IRTKLNDKGMKKVPGCSSIEVD 612



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 134/475 (28%), Positives = 222/475 (46%), Gaps = 47/475 (9%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           +F+S+ + N   WN ++ G + S      +  +  M     + + ++   +LK  A  G 
Sbjct: 88  LFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGA 147

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCG-------------------------- 100
            + G+ +H   ++LG   D F+  SL++MY++ G                          
Sbjct: 148 TQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITG 207

Query: 101 -----LADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVL 155
                  D+A ++F  I   D V+W A+I    Q G  +EA   F  M+ ++V PN+  +
Sbjct: 208 YTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTM 267

Query: 156 TSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH 215
            +++ A  ++G    G  + + I  +G  S+  + NAL+ MY + G +     +FE I  
Sbjct: 268 VTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICE 327

Query: 216 QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL 275
           +D +SWN +   +    S  + L +F +M     +PN  TF+ IL AC+ L  +  GK +
Sbjct: 328 KDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWI 387

Query: 276 HAHTIKHSLD-GNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGE 334
           HA+  K  L   N  + TSL+DMY K G +E A   F  +  K L ++ A+I+  A  G 
Sbjct: 388 HAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGH 447

Query: 335 AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA 394
           A MAL+ FR+MR EG + ++ T    L+ CS    +  GR   S  V+     D  +S  
Sbjct: 448 ANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVE-----DYDISPK 502

Query: 395 L------VAMYAKCGSIDDAEAVFKGSALR-DTASWNMMIGGYVKHG---LGEKA 439
           L      + +  + G  D+AEA+ K   ++ D A W  ++G    HG   LGE A
Sbjct: 503 LQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFA 557



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 130/452 (28%), Positives = 211/452 (46%), Gaps = 53/452 (11%)

Query: 172 ESIHAVICKYGFESDTLVGNALVSM--YMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
           + IH+ I K G  +     + L+        G +SY   +FE+I   +   WN +     
Sbjct: 49  KQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNS 108

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
              SP   +  + +MLL G +PN  TF  +LK+C+ +     GKQ+H H +K  L+ +  
Sbjct: 109 LSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPF 168

Query: 290 VGTSLVDMYDKS-------------------------------GCLEDAGVAFDSLANKD 318
           V TSL++MY ++                               GCL+DA   F+ +  +D
Sbjct: 169 VHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRD 228

Query: 319 LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHS 378
             ++ A+I  YAQ+G  E AL  F++M+   +  NE T+ + L+ C+   +L  G  + S
Sbjct: 229 AVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRS 288

Query: 379 IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEK 438
                G   ++ +  AL+ MY+KCG +D A  +F+G   +D  SWN+MIGGY      ++
Sbjct: 289 WIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKE 348

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI-KKIYGITPTIKHFACM 497
           AL  FR M      P+++TFV +L AC+++G ++ GK   + I KK  G+T T   +  +
Sbjct: 349 ALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNT-SLWTSL 407

Query: 498 IDILGRAGKFTEIENFITETKLTPNAL-VWENLLGACSWHGNIELDEKDAEKLLELEPKM 556
           ID+  + G     +      K  P +L  W  ++   + HG+       A   LEL  +M
Sbjct: 408 IDMYAKCGNIEAAKQVFAGMK--PKSLGSWNAMISGLAMHGH-------ANMALELFRQM 458

Query: 557 ESNYVFPSDISATQGRWNDFSGVRALLSSQGI 588
                 P DI+        F GV +  S  G+
Sbjct: 459 RDEGFEPDDIT--------FVGVLSACSHAGL 482



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/318 (30%), Positives = 159/318 (50%), Gaps = 16/318 (5%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R+F+ +P  + VSWNA++ GYA+SG  ++ +  F  MK      ++ ++ TVL   A 
Sbjct: 217 ARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQ 276

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           SG ++ G  V +     G   +  L  +L+DMYSKCG  D A  +F  I + D+++W  +
Sbjct: 277 SGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVM 336

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI-CKYG 182
           I         +EA  +F  M++S+V+PN     S++ A    G    G+ IHA I  K+ 
Sbjct: 337 IGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFL 396

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
             ++T +  +L+ MY + G +    +VF  +  +   SWNA+ S    +   +  L +F 
Sbjct: 397 GLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFR 456

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           QM  +GF+P+  TF+ +L ACS    V  G+Q                 +S+V+ YD S 
Sbjct: 457 QMRDEGFEPDDITFVGVLSACSHAGLVELGRQCF---------------SSMVEDYDISP 501

Query: 303 CLEDAGVAFDSLANKDLF 320
            L+  G   D L    LF
Sbjct: 502 KLQHYGCMIDLLGRAGLF 519



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 151/344 (43%), Gaps = 45/344 (13%)

Query: 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS--GCLEDAGVAFDSL 314
           + +L  C S  ++   KQ+H+  IK  L       + L++    S  G L  A + F+S+
Sbjct: 36  LTLLSTCKSFQNL---KQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESI 92

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
              + F +  +I   + +     A+  + +M L G++ N +T    L  C+ V     G+
Sbjct: 93  EQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGK 152

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL----------------- 417
            +H   +K G   D FV T+L+ MYA+ G +  AE VF  S+L                 
Sbjct: 153 QIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRG 212

Query: 418 --------------RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
                         RD  SWN MI GY + G  E+AL  F+ M      P+E T V VLS
Sbjct: 213 CLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLS 272

Query: 464 ACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNA 523
           AC+  G +E G    S I+  +G+   ++    +ID+  + G   +  +   E     + 
Sbjct: 273 ACAQSGSLELGNWVRSWIED-HGLGSNLRLVNALIDMYSKCGDLDKARDLF-EGICEKDI 330

Query: 524 LVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           + W  ++G  S H N        ++ L L  KM+ + V P+D++
Sbjct: 331 ISWNVMIGGYS-HMN------SYKEALALFRKMQQSNVEPNDVT 367



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 86/167 (51%), Gaps = 1/167 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+ +F+ + E +++SWN ++ GY+     ++ + LF  M+    + +  +  ++L  
Sbjct: 315 LDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPA 374

Query: 61  FANSGYIKAGQVVHAMAIRLGCAL-DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
            A  G +  G+ +HA   +    L +  L  SL+DMY+KCG  + A +VF  +K   + +
Sbjct: 375 CAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGS 434

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
           W A+I+ L   G    A ++F  MR+   +P+      ++ A +  G
Sbjct: 435 WNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAG 481



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 13/175 (7%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E AK+VF  M   ++ SWNA+++G A  G     + LF  M+D   +    +   VL  
Sbjct: 417 IEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSA 476

Query: 61  FANSGYIKAGQVVHAMAIR---LGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPD 116
            +++G ++ G+   +  +    +   L  +  C ++D+  + GL D A  +   ++  PD
Sbjct: 477 CSHAGLVELGRQCFSSMVEDYDISPKLQHY-GC-MIDLLGRAGLFDEAEALMKNMEMKPD 534

Query: 117 VVAWGAIITCLDQQGCCQ----EAAKIFNLMRESSVKPNQFVLTSLVRATTETGD 167
              WG+++      G  +     A  +F L  E+   P  +VL S + AT    D
Sbjct: 535 GAIWGSLLGACRVHGNVELGEFAAKHLFELEPEN---PGAYVLLSNIYATAGRWD 586


>gi|302793382|ref|XP_002978456.1| hypothetical protein SELMODRAFT_108616 [Selaginella moellendorffii]
 gi|300153805|gb|EFJ20442.1| hypothetical protein SELMODRAFT_108616 [Selaginella moellendorffii]
          Length = 899

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 206/606 (33%), Positives = 334/606 (55%), Gaps = 17/606 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMK-DMEKKFSKFSLSTVLKGFA 62
           AK VF+ +PE N+VSWNAL+   A++G  +  M +F  M  D   + +  +  +V+   +
Sbjct: 180 AKAVFERLPERNLVSWNALIAANAQNGHCKDAMQVFHLMDLDGSVRPNDATFVSVVDACS 239

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           N   +  G+  H   IR G     F+  SLV+MY KCG  D A  VF ++   +VV+W  
Sbjct: 240 NLLDLPRGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGSVDRARLVFEKMSSRNVVSWTV 299

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I    QQG  + A   F+L +    +PN     +++ +     D    E IHA +   G
Sbjct: 300 MIWAYAQQGFIRAA---FDLYKRMDCEPNAVTFMAVMDSCLRPEDLPRAEQIHAHMVASG 356

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ--DSVSWNALFSRFQDYESPDQGLRI 240
           F+SD ++   LV+MY + G V     +FE +  +  ++V+WNA+ S    +    Q L  
Sbjct: 357 FDSDAVLQVCLVTMYGKCGSVDSAWSIFENLKERSNNAVTWNAMISGLAQHGESKQALEC 416

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F++M L+G +PN  T++  L+ACSSL+D+  G+QLHA  +  ++   ++   ++++MY K
Sbjct: 417 FWKMELEGVRPNSVTYLASLEACSSLNDLTRGRQLHARILLENIHEANL-SNAVINMYGK 475

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L++A   F  +  +D+ ++  +I +YAQ G    AL+ F++M LEG  ++  T    
Sbjct: 476 CGSLDEAMDEFAKMPERDVVSWNTMIATYAQHGSGRQALEFFKQMDLEGWTTDRATYLGA 535

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLL--DMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           ++ C  V +LA G+ +HSI       L  D  V+TALV MYA+CGS+ DA++VF  S  R
Sbjct: 536 IDACGSVPSLALGKTIHSIVATAAPCLEQDPGVATALVTMYARCGSLHDAKSVFWRSHSR 595

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           +  +W+ +I    +HG   +AL+ FR M  +G  PD +TF  +++ACS  G++++G  +F
Sbjct: 596 NLVTWSNLIAACAQHGRENEALDLFREMQLQGTKPDALTFSTLVAACSRRGVVKDGVFYF 655

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            S+ + Y I  +  HF  M+D+LGRAG   E E  +   +  P AL    LLGAC  HG+
Sbjct: 656 VSMVEDYSIPASEDHFGGMVDLLGRAGWLEEAEQVM---RKNPCALAHAVLLGACHVHGD 712

Query: 539 IELDEKDAEKLLELEPKMESNY----VFPSDISATQGRWNDFSGVRALLSSQGIKKEPSC 594
           +E   + A+  LEL+ K  +++       +++    GRW D + VR  + S+  ++EP  
Sbjct: 713 VERGIRIAQSALELDWKNSASFAASMAMLAELYGAAGRWEDAARVRKAVESRNARREPGG 772

Query: 595 -SWIEV 599
            SWIEV
Sbjct: 773 RSWIEV 778



 Score =  294 bits (753), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 181/580 (31%), Positives = 300/580 (51%), Gaps = 19/580 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  VF+ +P  NV SW AL+  YA+ G  ++V+ LF  M+    K   F  STVL  
Sbjct: 77  LEDALEVFELLPNPNVFSWTALITAYAKEGHLREVLGLFRKMQLDGTKPDAFVFSTVLTA 136

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +++G +  G+ +H  A+  G    + +  ++V++Y KCG    A  VF R+ + ++V+W
Sbjct: 137 CSSAGALNEGKAIHDCAVLAGME-TQVVGNAIVNLYGKCGRVHEAKAVFERLPERNLVSW 195

Query: 121 GAIITCLDQQGCCQEAAKIFNLMR-ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            A+I    Q G C++A ++F+LM  + SV+PN     S+V A +   D   G+S H  I 
Sbjct: 196 NALIAANAQNGHCKDAMQVFHLMDLDGSVRPNDATFVSVVDACSNLLDLPRGKSTHERII 255

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           + GF+S   VGN+LV+MY + G V     VFE ++ ++ VSW  +   +           
Sbjct: 256 RTGFDSYLFVGNSLVNMYGKCGSVDRARLVFEKMSSRNVVSWTVMIWAYAQQGFIRAAFD 315

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           ++ +M     +PN  TF+ ++ +C    D+   +Q+HAH +    D + V+   LV MY 
Sbjct: 316 LYKRM---DCEPNAVTFMAVMDSCLRPEDLPRAEQIHAHMVASGFDSDAVLQVCLVTMYG 372

Query: 300 KSGCLEDAGVAFDSLANK--DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           K G ++ A   F++L  +  +   + A+I+  AQ GE++ AL+CF KM LEG++ N  T 
Sbjct: 373 KCGSVDSAWSIFENLKERSNNAVTWNAMISGLAQHGESKQALECFWKMELEGVRPNSVTY 432

Query: 358 ASCLNGCSPVATLANGRLLHS-IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
            + L  CS +  L  GR LH+ I ++  H  ++  S A++ MY KCGS+D+A   F    
Sbjct: 433 LASLEACSSLNDLTRGRQLHARILLENIHEANL--SNAVINMYGKCGSLDEAMDEFAKMP 490

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            RD  SWN MI  Y +HG G +ALE F+ M  EG+  D  T++  + AC  +  +  GK 
Sbjct: 491 ERDVVSWNTMIATYAQHGSGRQALEFFKQMDLEGWTTDRATYLGAIDACGSVPSLALGKT 550

Query: 477 HFSSIKKIYGITPTIKH----FACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
             S +       P ++        ++ +  R G   + ++    +  + N + W NL+ A
Sbjct: 551 IHSIVAT---AAPCLEQDPGVATALVTMYARCGSLHDAKSVFWRSH-SRNLVTWSNLIAA 606

Query: 533 CSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGR 572
           C+ HG  E +  D  + ++L+        F + ++A   R
Sbjct: 607 CAQHGR-ENEALDLFREMQLQGTKPDALTFSTLVAACSRR 645



 Score =  248 bits (634), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 145/502 (28%), Positives = 258/502 (51%), Gaps = 14/502 (2%)

Query: 42  MKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGL 101
           +K   +       +++L+         AG++VH   +  GC +++++   L+ MY+KCG 
Sbjct: 17  LKKSSESLQPARYASLLQKCTEQKSAAAGKLVHQHILSSGCGVNRYIQNHLIFMYAKCGC 76

Query: 102 ADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRA 161
            ++AL+VF  + +P+V +W A+IT   ++G  +E   +F  M+    KP+ FV ++++ A
Sbjct: 77  LEDALEVFELLPNPNVFSWTALITAYAKEGHLREVLGLFRKMQLDGTKPDAFVFSTVLTA 136

Query: 162 TTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSW 221
            +  G    G++IH      G E+  +VGNA+V++Y + GRV     VFE +  ++ VSW
Sbjct: 137 CSSAGALNEGKAIHDCAVLAGMETQ-VVGNAIVNLYGKCGRVHEAKAVFERLPERNLVSW 195

Query: 222 NALFSRFQDYESPDQGLRIFYQMLLKG-FKPNMCTFIVILKACSSLSDVGFGKQLHAHTI 280
           NAL +           +++F+ M L G  +PN  TF+ ++ ACS+L D+  GK  H   I
Sbjct: 196 NALIAANAQNGHCKDAMQVFHLMDLDGSVRPNDATFVSVVDACSNLLDLPRGKSTHERII 255

Query: 281 KHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALK 340
           +   D    VG SLV+MY K G ++ A + F+ ++++++ ++T +I +YAQ G    A  
Sbjct: 256 RTGFDSYLFVGNSLVNMYGKCGSVDRARLVFEKMSSRNVVSWTVMIWAYAQQGFIRAAFD 315

Query: 341 CFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYA 400
            +++M  E    N  T  + ++ C     L     +H+  V +G   D  +   LV MY 
Sbjct: 316 LYKRMDCE---PNAVTFMAVMDSCLRPEDLPRAEQIHAHMVASGFDSDAVLQVCLVTMYG 372

Query: 401 KCGSIDDAEAVFKGSALR--DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITF 458
           KCGS+D A ++F+    R  +  +WN MI G  +HG  ++ALE F  M  EG  P+ +T+
Sbjct: 373 KCGSVDSAWSIFENLKERSNNAVTWNAMISGLAQHGESKQALECFWKMELEGVRPNSVTY 432

Query: 459 VVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK 518
           +  L ACS +  +  G++  + I     +   I        ++   GK   ++  + E  
Sbjct: 433 LASLEACSSLNDLTRGRQLHARI-----LLENIHEANLSNAVINMYGKCGSLDEAMDEFA 487

Query: 519 LTP--NALVWENLLGACSWHGN 538
             P  + + W  ++   + HG+
Sbjct: 488 KMPERDVVSWNTMIATYAQHGS 509



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 116/431 (26%), Positives = 209/431 (48%), Gaps = 16/431 (3%)

Query: 140 FNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYME 199
            N +++SS         SL++  TE      G+ +H  I   G   +  + N L+ MY +
Sbjct: 14  INQLKKSSESLQPARYASLLQKCTEQKSAAAGKLVHQHILSSGCGVNRYIQNHLIFMYAK 73

Query: 200 NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVI 259
            G +     VFE + + +  SW AL + +       + L +F +M L G KP+   F  +
Sbjct: 74  CGCLEDALEVFELLPNPNVFSWTALITAYAKEGHLREVLGLFRKMQLDGTKPDAFVFSTV 133

Query: 260 LKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL 319
           L ACSS   +  GK +H   +   ++   VVG ++V++Y K G + +A   F+ L  ++L
Sbjct: 134 LTACSSAGALNEGKAIHDCAVLAGME-TQVVGNAIVNLYGKCGRVHEAKAVFERLPERNL 192

Query: 320 FAYTAIITSYAQAGEAEMALKCFRKMRLEG-IKSNEFTLASCLNGCSPVATLANGRLLHS 378
            ++ A+I + AQ G  + A++ F  M L+G ++ N+ T  S ++ CS +  L  G+  H 
Sbjct: 193 VSWNALIAANAQNGHCKDAMQVFHLMDLDGSVRPNDATFVSVVDACSNLLDLPRGKSTHE 252

Query: 379 IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEK 438
             ++TG    +FV  +LV MY KCGS+D A  VF+  + R+  SW +MI  Y + G    
Sbjct: 253 RIIRTGFDSYLFVGNSLVNMYGKCGSVDRARLVFEKMSSRNVVSWTVMIWAYAQQGFIRA 312

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACM 497
           A + ++ M  E   P+ +TF+ V+ +C     +   ++ H   +   +     ++   C+
Sbjct: 313 AFDLYKRMDCE---PNAVTFMAVMDSCLRPEDLPRAEQIHAHMVASGFDSDAVLQ--VCL 367

Query: 498 IDILGRAGKFTEIENFITETK-LTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKM 556
           + + G+ G      +     K  + NA+ W  ++   + HG       ++++ LE   KM
Sbjct: 368 VTMYGKCGSVDSAWSIFENLKERSNNAVTWNAMISGLAQHG-------ESKQALECFWKM 420

Query: 557 ESNYVFPSDIS 567
           E   V P+ ++
Sbjct: 421 ELEGVRPNSVT 431


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 196/603 (32%), Positives = 328/603 (54%), Gaps = 15/603 (2%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           VF ++   N VSW  ++  +A +G  ++ +  +  M  +E      ++  V  G  +S  
Sbjct: 14  VFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMV-LEGLRPDGAMFVVAIGVCSSSK 72

Query: 67  -IKAGQVVHAMAIRLGC-ALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
            +K GQ++HAM +       D  L  +L+ MY++C   + A K F  +    +V W A+I
Sbjct: 73  DLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALI 132

Query: 125 TCLDQQGCCQEAAKIFNLMRESS---VKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
               + G  + A KI+  M   S   +KP+    +S + A +  GD   G  I A     
Sbjct: 133 AGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTVAS 192

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G+ SD++V NAL++MY + G +    +VF+ + ++D ++WN + S +    +  Q L +F
Sbjct: 193 GYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELF 252

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK- 300
            +M     KPN+ TFI +L AC++L D+  G+ +H    +H  + + V+G  L++MY K 
Sbjct: 253 QRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKC 312

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
           S  LE+A   F+ L  +D+  +  +I +Y Q G+A+ AL  F++M+LE +  NE TL++ 
Sbjct: 313 SSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNV 372

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L+ C+ +     G+ +H++        D+ +  +L+ MY +CGS+DD   VF  +A+RD 
Sbjct: 373 LSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVF--AAIRDK 430

Query: 421 A--SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           +  SW+ +I  Y +HG     LE F  +L EG   D++T V  LSACSH G+++EG + F
Sbjct: 431 SLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSF 490

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            S+   +G+ P  +HF CM+D+L RAG+    EN I +    P+A+ W +LL  C  H +
Sbjct: 491 LSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHND 550

Query: 539 IELDEKDAEKLLELEPKME-SNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
            +   + A+KL ELE + E S     S++ A  GRW+D   VR   + +  +K P CS+I
Sbjct: 551 TKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDD---VRKTRNRRAARKNPGCSYI 607

Query: 598 EVD 600
           E++
Sbjct: 608 EIN 610



 Score =  225 bits (573), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 123/386 (31%), Positives = 204/386 (52%), Gaps = 5/386 (1%)

Query: 95  MYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFV 154
           MY KCG   +AL VF+ I+ P+ V+W  I+    + G  +EA   +  M    ++P+  +
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 155 LTSLVRATTETGDQRCGESIHAVICKYG-FESDTLVGNALVSMYMENGRVSYGSRVFEAI 213
               +   + + D + G+ +HA+I +    E D ++G AL++MY     +    + F+ +
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 214 AHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK---GFKPNMCTFIVILKACSSLSDVG 270
             +  V+WNAL + +         L+I+  M+ K   G KP+  TF   L ACS + D+ 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 271 FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
            G+++ A T+      + +V  +L++MY K G LE A   FD L N+D+ A+  +I+ YA
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
           + G A  AL+ F++M     K N  T    L  C+ +  L  GR +H    + G+  D+ 
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLV 300

Query: 391 VSTALVAMYAKC-GSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDE 449
           +   L+ MY KC  S+++A  VF+    RD  +WN++I  YV++G  + AL+ F+ M  E
Sbjct: 301 IGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLE 360

Query: 450 GYVPDEITFVVVLSACSHMGLIEEGK 475
              P+EIT   VLSAC+ +G   +GK
Sbjct: 361 NVAPNEITLSNVLSACAVLGAKRQGK 386



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 142/475 (29%), Positives = 240/475 (50%), Gaps = 19/475 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM--KDME-KKFSKFSLSTV 57
           +ELA++ F  M +  +V+WNAL+ GY+ +GD +  + ++  M  K  E  K    + S+ 
Sbjct: 110 LELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSA 169

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
           L   +  G I  G+ + A  +  G A D  +  +L++MYSKCG  ++A KVF R+K+ DV
Sbjct: 170 LYACSVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDV 229

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           +AW  +I+   +QG   +A ++F  M  +  KPN      L+ A T   D   G +IH  
Sbjct: 230 IAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRK 289

Query: 178 ICKYGFESDTLVGNALVSMYME-NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
           + ++G+ESD ++GN L++MY + +  +    +VFE +  +D ++WN L   +  Y     
Sbjct: 290 VKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKD 349

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            L IF QM L+   PN  T   +L AC+ L     GK +HA         + V+  SL++
Sbjct: 350 ALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMN 409

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           MY++ G L+D    F ++ +K L +++ +I +YAQ G +   L+ F ++  EG+ +++ T
Sbjct: 410 MYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVT 469

Query: 357 LASCLNGCSPVATLANGRLL-------HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           + S L+ CS    L  G          H +A    H L M      V + ++ G ++ AE
Sbjct: 470 MVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCM------VDLLSRAGRLEAAE 523

Query: 410 AVFKGSA-LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
            +      L D  +W  ++ G   H   ++A      +  E    DE + V +LS
Sbjct: 524 NLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLF-ELESEDEHSTVTLLS 577



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 116/376 (30%), Positives = 197/376 (52%), Gaps = 12/376 (3%)

Query: 196 MYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCT 255
           MY + G V+    VF AI H +SVSW  + + F       + L  + +M+L+G +P+   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHS-LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
           F+V +  CSS  D+  G+ LHA  ++   L+ + ++GT+L+ MY +   LE A   FD +
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKM---RLEGIKSNEFTLASCLNGCSPVATLA 371
             K L  + A+I  Y++ G+   ALK ++ M     EG+K +  T +S L  CS V  ++
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 372 NGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV 431
            GR + +  V +G+  D  V  AL+ MY+KCGS++ A  VF     RD  +WN MI GY 
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI 491
           K G   +ALE F+ M      P+ +TF+ +L+AC+++  +E+G+     +K+ +G    +
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKE-HGYESDL 299

Query: 492 KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551
                ++++  +     E    + E   T + + W  L+ A   +G      KDA   L+
Sbjct: 300 VIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQ----AKDA---LD 352

Query: 552 LEPKMESNYVFPSDIS 567
           +  +M+   V P++I+
Sbjct: 353 IFKQMQLENVAPNEIT 368


>gi|224121748|ref|XP_002330643.1| predicted protein [Populus trichocarpa]
 gi|222872247|gb|EEF09378.1| predicted protein [Populus trichocarpa]
          Length = 777

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 195/572 (34%), Positives = 315/572 (55%), Gaps = 12/572 (2%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           + A+++F+ M   N VS N L+ G      G++ + +F   + +    +  S   +L   
Sbjct: 203 DYARKIFEQMTARNAVSMNGLMVGLVRQKCGEEAVEVFKETRHL-VDINVDSYVILLSAC 261

Query: 62  ANSGYI----KAGQVVHAMAIRLGCALDKF-LSCSLVDMYSKCGLADNALKVFYRIKDPD 116
           A    +    + G+ VH  AIR G    K  +   L++MY+KCG  D+A  VF  + D D
Sbjct: 262 AEFALLDEGRRKGREVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDKD 321

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
            V+W ++IT LDQ  C ++A K +N MR++ + P+ F L S + +    G    G+  H 
Sbjct: 322 SVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFTLISALSSCASLGCILLGQQTHG 381

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY-ESPD 235
              K G + D  V N L+++Y E G ++   +VF  +  +D VSWN +     D   S  
Sbjct: 382 EGIKLGLDMDVSVSNTLLALYAETGHLAECQKVFSWMLERDQVSWNTVIGALADSGASVS 441

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
           + + +F +M+  G+ PN  TFI +L   SSLS      Q+HA  +K+++  ++ +  +L+
Sbjct: 442 EAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENALL 501

Query: 296 DMYDKSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
             Y KSG +E+    F  ++  +D  ++ ++I+ Y        A+     M   G + + 
Sbjct: 502 ACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNDLLCKAMDLVWLMMQRGQRLDC 561

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
           FT A+ L+ C+ VATL  G  +H+ A++     D+ + +ALV MY+KCG ID A   F  
Sbjct: 562 FTFATVLSACATVATLERGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNL 621

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
             +R+  SWN MI GY +HG G+ AL  F  M   G +PD ITFV VLSACSH+GL++EG
Sbjct: 622 MPMRNLYSWNSMISGYARHGYGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEG 681

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
            ++F S+ ++YG+ P ++H++CM+D+LGRAG+  +I+NFI +  + PN L+W  +LGAC 
Sbjct: 682 FEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIDNFINKMPIKPNILIWRTVLGACC 741

Query: 535 WHGN---IELDEKDAEKLLELEPKMESNYVFP 563
             GN    EL  + AE L  ++P+     ++P
Sbjct: 742 -RGNGRKTELGRRAAEMLFNMDPQNAVMNIYP 772



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 152/607 (25%), Positives = 280/607 (46%), Gaps = 37/607 (6%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDME-------KKFSKFS 53
           ++ A+ VF  +   N + WN++++ Y++ GD      LF SM+  +        +++  S
Sbjct: 95  IDYARSVFDEIEIRNSIYWNSIVSVYSQRGDAASCFELFSSMQMADSGLSLKPNEYTFGS 154

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
           L T      +SG    GQ++ A   + G   + ++  +L   +S+ G  D A K+F ++ 
Sbjct: 155 LITAACSSVDSGLSLLGQIL-ARIKKSGLLANLYVGSALAGGFSRLGSFDYARKIFEQMT 213

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIFNLMR---ESSVKPNQFVLTSLVRATTETGDQRC 170
             + V+   ++  L +Q C +EA ++F   R   + +V     +L++          +R 
Sbjct: 214 ARNAVSMNGLMVGLVRQKCGEEAVEVFKETRHLVDINVDSYVILLSACAEFALLDEGRRK 273

Query: 171 GESIHAVICKYGF-ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
           G  +H    + G  ++   VGN L++MY + G + +   VF  +  +DSVSWN++ +   
Sbjct: 274 GREVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLD 333

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
             +  +  ++ +  M   G  P+  T I  L +C+SL  +  G+Q H   IK  LD +  
Sbjct: 334 QNKCFEDAVKSYNSMRKTGLMPSNFTLISALSSCASLGCILLGQQTHGEGIKLGLDMDVS 393

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEA-EMALKCFRKMRLE 348
           V  +L+ +Y ++G L +    F  +  +D  ++  +I + A +G +   A++ F +M   
Sbjct: 394 VSNTLLALYAETGHLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRA 453

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
           G   N  T  + L   S ++T      +H++ +K     D  +  AL+A Y K G +++ 
Sbjct: 454 GWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENC 513

Query: 409 EAVF-KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
           E +F + S  RD  SWN MI GY+ + L  KA++   +M+  G   D  TF  VLSAC+ 
Sbjct: 514 EEIFSRMSERRDEVSWNSMISGYIHNDLLCKAMDLVWLMMQRGQRLDCFTFATVLSACAT 573

Query: 468 MGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTP--NAL 524
           +  +E G + H  +I+        I   + ++D+  + G+      F     L P  N  
Sbjct: 574 VATLERGMEVHACAIRACLESDVVIG--SALVDMYSKCGRIDYASRFFN---LMPMRNLY 628

Query: 525 VWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLS 584
            W +++   + HG         +  L L  +M+ +   P  I+        F GV +  S
Sbjct: 629 SWNSMISGYARHGY-------GDNALRLFTRMKLSGQLPDHIT--------FVGVLSACS 673

Query: 585 SQGIKKE 591
             G+  E
Sbjct: 674 HIGLVDE 680



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 137/536 (25%), Positives = 260/536 (48%), Gaps = 19/536 (3%)

Query: 11  MPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY--IK 68
           MP+ N V+W  L++GY ++G       +   M       ++F+  + ++    S    ++
Sbjct: 1   MPDRNGVTWACLISGYTQNGMPDDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLCGLQ 60

Query: 69  AGQVVHAMAIRLGCALDKFLSCSLVDMYSK-CGLADNALKVFYRIKDPDVVAWGAIITCL 127
            G  +H + ++   A D  L   L+ MY K  G  D A  VF  I+  + + W +I++  
Sbjct: 61  LGMQIHGLILKSPYANDASLCNVLISMYGKYLGYIDYARSVFDEIEIRNSIYWNSIVSVY 120

Query: 128 DQQGCCQEAAKIFNLMRES----SVKPNQFVLTSLVRA---TTETGDQRCGESIHAVICK 180
            Q+G      ++F+ M+ +    S+KPN++   SL+ A   + ++G    G+ I A I K
Sbjct: 121 SQRGDAASCFELFSSMQMADSGLSLKPNEYTFGSLITAACSSVDSGLSLLGQ-ILARIKK 179

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G  ++  VG+AL   +   G   Y  ++FE +  +++VS N L       +  ++ + +
Sbjct: 180 SGLLANLYVGSALAGGFSRLGSFDYARKIFEQMTARNAVSMNGLMVGLVRQKCGEEAVEV 239

Query: 241 FYQMLLKGFKPNMCTFIVILKACS--SLSDVGF--GKQLHAHTIKHSL-DGNHVVGTSLV 295
           F +        N+ +++++L AC+  +L D G   G+++H + I+  L D    VG  L+
Sbjct: 240 FKET-RHLVDINVDSYVILLSACAEFALLDEGRRKGREVHGYAIRTGLNDAKVAVGNGLI 298

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
           +MY K G ++ A   F  + +KD  ++ ++IT   Q    E A+K +  MR  G+  + F
Sbjct: 299 NMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNF 358

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
           TL S L+ C+ +  +  G+  H   +K G  +D+ VS  L+A+YA+ G + + + VF   
Sbjct: 359 TLISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETGHLAECQKVFSWM 418

Query: 416 ALRDTASWNMMIGGYVKHGLG-EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
             RD  SWN +IG     G    +A+E F  M+  G+ P+ +TF+ +L+  S +   +  
Sbjct: 419 LERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLS 478

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
            +  + I K Y +         ++   G++G+    E   +      + + W +++
Sbjct: 479 HQIHALILK-YNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMI 533



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 119/438 (27%), Positives = 203/438 (46%), Gaps = 23/438 (5%)

Query: 112 IKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTET---GDQ 168
           + D + V W  +I+   Q G   +A  +   M      PN+F   S +RA  E+   G Q
Sbjct: 1   MPDRNGVTWACLISGYTQNGMPDDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLCGLQ 60

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMEN-GRVSYGSRVFEAIAHQDSVSWNALFSR 227
             G  IH +I K  + +D  + N L+SMY +  G + Y   VF+ I  ++S+ WN++ S 
Sbjct: 61  -LGMQIHGLILKSPYANDASLCNVLISMYGKYLGYIDYARSVFDEIEIRNSIYWNSIVSV 119

Query: 228 FQDYESPDQGLRIFYQMLLK----GFKPNMCTF-IVILKACSSL-SDVGFGKQLHAHTIK 281
           +           +F  M +       KPN  TF  +I  ACSS+ S +    Q+ A   K
Sbjct: 120 YSQRGDAASCFELFSSMQMADSGLSLKPNEYTFGSLITAACSSVDSGLSLLGQILARIKK 179

Query: 282 HSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKC 341
             L  N  VG++L   + + G  + A   F+ +  ++  +   ++    +    E A++ 
Sbjct: 180 SGLLANLYVGSALAGGFSRLGSFDYARKIFEQMTARNAVSMNGLMVGLVRQKCGEEAVEV 239

Query: 342 FRKMR-LEGIKSNEFTLASCLNGCSPVATLANGRL----LHSIAVKTG-HLLDMFVSTAL 395
           F++ R L  I  + + +   L+ C+  A L  GR     +H  A++TG +   + V   L
Sbjct: 240 FKETRHLVDINVDSYVIL--LSACAEFALLDEGRRKGREVHGYAIRTGLNDAKVAVGNGL 297

Query: 396 VAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE 455
           + MYAKCG ID A +VF     +D+ SWN MI G  ++   E A++++  M   G +P  
Sbjct: 298 INMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSN 357

Query: 456 ITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFI 514
            T +  LS+C+ +G I  G++ H   IK   G+   +     ++ +    G   E +   
Sbjct: 358 FTLISALSSCASLGCILLGQQTHGEGIK--LGLDMDVSVSNTLLALYAETGHLAECQKVF 415

Query: 515 TETKLTPNALVWENLLGA 532
           +   L  + + W  ++GA
Sbjct: 416 SWM-LERDQVSWNTVIGA 432



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 19/155 (12%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A R F  MP  N+ SWN++++GYA  G G   + LF  MK   +     +   VL  
Sbjct: 612 IDYASRFFNLMPMRNLYSWNSMISGYARHGYGDNALRLFTRMKLSGQLPDHITFVGVLSA 671

Query: 61  FANSG-------YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
            ++ G       Y K+   V+ +  R+     +  SC +VD+  + G  D       ++ 
Sbjct: 672 CSHIGLVDEGFEYFKSMTEVYGLVPRV-----EHYSC-MVDLLGRAGELDKIDNFINKMP 725

Query: 114 -DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESS 147
             P+++ W  ++       CC+   +   L R ++
Sbjct: 726 IKPNILIWRTVLG-----ACCRGNGRKTELGRRAA 755


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 181/597 (30%), Positives = 321/597 (53%), Gaps = 1/597 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F  M E   VSW  L+ GY +S   ++   L+  M+    +    +L T+L GF  
Sbjct: 93  ARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGE 152

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                    +H   I+LG   +  +  SLVD Y K      A ++F  + + D V + ++
Sbjct: 153 LETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSL 212

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +T    +G  +EA ++F  +  S +KP+ F   +L+ A     D + G+ +H  + K  F
Sbjct: 213 MTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNF 272

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             +  VGNAL+  Y ++ +V    ++F  +   D +S+N + + +       +   +F +
Sbjct: 273 VWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRK 332

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           +    F      F  +L   +S  ++  G+Q+H   I    +    V  +LVDMY K   
Sbjct: 333 LQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNG 392

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
            ++A   FD++A K    +TA+I++Y Q G+ E  +  F  MR  G+ +++ T AS L  
Sbjct: 393 DKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRA 452

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +A+++ GR LHS+ +++G + +++  +AL+  YAKCG + DA   F     R++ SW
Sbjct: 453 CANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSW 512

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I  Y ++G  +  L +F+ M+  GY PD ++F+ VLSACSH G +EE   HF+S+ +
Sbjct: 513 NALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQ 572

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
           IY +TP  +H+  M+D+L R G+F E E  +TE    P+ ++W ++L +C  H N EL +
Sbjct: 573 IYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAK 632

Query: 544 KDAEKLLELEP-KMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           K A++L  +E  +  + Y+  S+I A  G+W++ + V+  +  +G++K P+ SW+E+
Sbjct: 633 KAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEI 689



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 127/490 (25%), Positives = 237/490 (48%), Gaps = 3/490 (0%)

Query: 52  FSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSL-VDMYSKCGLADNALKVFY 110
           F+ +T    F  + +++ G +VHA  +         +S ++ +  + K G    A ++F 
Sbjct: 39  FNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFD 98

Query: 111 RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC 170
            + +   V+W  +I    Q    +EA +++  MR   ++P+   L +L+    E   +  
Sbjct: 99  GMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNV 158

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
              IH  + K G+E + +V N+LV  Y +   +   S++F+ + ++D+V++N+L + + +
Sbjct: 159 IVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSN 218

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
               ++ + +F ++   G KP+  TF  +L A   L D  FG+Q+H   +K +   N  V
Sbjct: 219 EGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFV 278

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
           G +L+D Y K   +++ G  F  +   D  +Y  +ITSYA  G+ + +   FRK++    
Sbjct: 279 GNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRF 338

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
              +F  A+ L+  +    L  GR +H  A+  G   +  V  ALV MYAKC    +A+ 
Sbjct: 339 DRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQK 398

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           +F   A + T  W  MI  YV+ G  E+ +  F  M   G   D+ TF  +L AC+++  
Sbjct: 399 IFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLAS 458

Query: 471 IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
           I  G++  S + +  G    +   + ++D   + G  T+      E     N++ W  L+
Sbjct: 459 ISLGRQLHSLLIR-SGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMP-ERNSVSWNALI 516

Query: 531 GACSWHGNIE 540
            A + +GN++
Sbjct: 517 SAYAQNGNVD 526



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/457 (25%), Positives = 215/457 (47%), Gaps = 17/457 (3%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           LA ++FK M   + V++N+L+ GY+  G  ++ + LF  + +   K S F+ + +L    
Sbjct: 193 LASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAV 252

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
                K GQ VH   ++     + F+  +L+D YSK    D   K+F  + + D +++  
Sbjct: 253 GLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNV 312

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +IT     G  +E+  +F  ++ +     QF   +L+   T + + R G  IH      G
Sbjct: 313 VITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVG 372

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
              ++ V NALV MY +        ++F+ IA + +V W A+ S +      ++G+ +F 
Sbjct: 373 ANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFS 432

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            M   G   +  TF  IL+AC++L+ +  G+QLH+  I+     N   G++L+D Y K G
Sbjct: 433 DMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCG 492

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
           C+ DA  +F  +  ++  ++ A+I++YAQ G  +  L  F++M   G K +  +  S L+
Sbjct: 493 CMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLS 552

Query: 363 GCSPVATLANG-------RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
            CS    +            ++ +  K  H       T++V +  + G  D+AE +    
Sbjct: 553 ACSHCGFVEEALWHFNSMTQIYEVTPKREHY------TSMVDVLCRNGRFDEAEKLMTEM 606

Query: 416 ALRDTA-SWNMMIGG---YVKHGLGEKALEAFRMMLD 448
               +   W+ ++     +  H L +KA +    M D
Sbjct: 607 PFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMED 643


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 193/586 (32%), Positives = 313/586 (53%), Gaps = 1/586 (0%)

Query: 15   NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVH 74
            +V  WN  L+    +GD    +  F +M  +   +   +L  VL   A +  ++ G+ VH
Sbjct: 868  DVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVH 927

Query: 75   AMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQ 134
             +A++ G   D  ++ SLV+MYSK G A  A +VF  +K  D+++W ++I+   Q    +
Sbjct: 928  GIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEE 987

Query: 135  EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ-RCGESIHAVICKYGFESDTLVGNAL 193
            E+  +F  +    +KP+ F L S++RA +   D       IH    K G  +D+ V   L
Sbjct: 988  ESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTL 1047

Query: 194  VSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
            + +Y ++G++     +F+     D   WNA+   +       + L +F  +   G K + 
Sbjct: 1048 IDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQ 1107

Query: 254  CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
             T     KAC  L  +  GKQ+HAH IK   D +  V + ++DMY K G + +AG+ F+ 
Sbjct: 1108 ITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNY 1167

Query: 314  LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG 373
            ++  D  A+T++I+     G  + AL+ + +MR   +  +E+T A+ +   S V  L  G
Sbjct: 1168 ISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQG 1227

Query: 374  RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKH 433
            R LH+  +K   + D FV T+LV MYAKCG+I+DA  +FK   +R+ A WN M+ G  +H
Sbjct: 1228 RQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQH 1287

Query: 434  GLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKH 493
            G  E+A+  F+ M   G  PD ++F+ +LSACSH GL  E  ++  S+   YGI P I+H
Sbjct: 1288 GNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEH 1347

Query: 494  FACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELE 553
            ++C++D LGRAG   E +  I       +A +   LLGAC   G++E  ++ A +L  LE
Sbjct: 1348 YSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALE 1407

Query: 554  PKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            P   + YV  S+I A   RW+D +  R ++  + +KK+P  SWI+V
Sbjct: 1408 PFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDV 1453



 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 162/574 (28%), Positives = 287/574 (50%), Gaps = 48/574 (8%)

Query: 4    AKRVFKSMPELNVVSWNALLNGYAES-----GDGQKVMHLFCSMKDMEKKFSKFSLSTVL 58
            A++VF + PE ++V+WNA+L  YA S     G+ Q+ +HLF  ++      ++ +L+ VL
Sbjct: 675  ARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVL 734

Query: 59   KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
            K   NSG + A + VH  AI++G   D F+S +LV++YSKCG   +A  +F  +++ DVV
Sbjct: 735  KLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVV 794

Query: 119  AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
             W  ++    Q G  +EA ++F+    S ++P++F +  ++   +E              
Sbjct: 795  LWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEV------------- 841

Query: 179  CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
                        N     ++ +   +Y +++  +  + D   WN   S           +
Sbjct: 842  ------------NWDEGKWLADQVQAYAAKLSLSDDNPDVFCWNKKLSECLWAGDNWGAI 889

Query: 239  RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
              F  M       +  T +V+L A +   D+  GKQ+H   +K  LD +  V  SLV+MY
Sbjct: 890  ECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMY 949

Query: 299  DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
             K GC   A   F+ + + DL ++ ++I+S AQ+   E ++  F  +  EG+K + FTLA
Sbjct: 950  SKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLA 1009

Query: 359  SCLNGCSPVATLAN-GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
            S L  CS +    N  R +H  A+KTG++ D FV+T L+ +Y+K G +++AE +F+    
Sbjct: 1010 SVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDD 1069

Query: 418  RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK- 476
             D A WN M+ GY+    G+KALE F ++   G   D+IT      AC  + L+++GK+ 
Sbjct: 1070 LDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQI 1129

Query: 477  HFSSIKKIYGITPTIKHFACMIDILGRAGKFTE---IENFITETKLTPNALVWENLLGAC 533
            H  +IK   G    +   + ++D+  + G       + N+I+     P+ + W +++  C
Sbjct: 1130 HAHAIKA--GFDSDLHVNSGILDMYIKCGDMVNAGIVFNYIS----APDDVAWTSMISGC 1183

Query: 534  SWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
                   +D  + ++ L +  +M  + V P + +
Sbjct: 1184 -------VDNGNEDQALRIYHRMRQSRVMPDEYT 1210



 Score =  224 bits (572), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 156/593 (26%), Positives = 280/593 (47%), Gaps = 45/593 (7%)

Query: 1    MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
            M  A+ +F  M E +VV WN +L GY + G  ++   LF        +  +FS+  +L G
Sbjct: 778  MRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNG 837

Query: 61   FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +   + +                 K+L+  +    +K  L+D+         +PDV  W
Sbjct: 838  VSEVNWDEG----------------KWLADQVQAYAAKLSLSDD---------NPDVFCW 872

Query: 121  GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
               ++     G    A + F  M   ++  +   L  ++ A   T D   G+ +H +  K
Sbjct: 873  NKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVK 932

Query: 181  YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             G +SD  V N+LV+MY + G   +   VF  + H D +SWN++ S        ++ + +
Sbjct: 933  SGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNL 992

Query: 241  FYQMLLKGFKPNMCTFIVILKACSSLSD-VGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
            F  +L +G KP+  T   +L+ACSSL D +   +Q+H H +K     +  V T+L+D+Y 
Sbjct: 993  FIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYS 1052

Query: 300  KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
            KSG +E+A   F +  + DL  + A++  Y    + + AL+ F  +   G KS++ TLA+
Sbjct: 1053 KSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLAT 1112

Query: 360  CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
                C  +  L  G+ +H+ A+K G   D+ V++ ++ MY KCG + +A  VF   +  D
Sbjct: 1113 AAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPD 1172

Query: 420  TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
              +W  MI G V +G  ++AL  +  M     +PDE TF  ++ A S +  +E+G++  +
Sbjct: 1173 DVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHA 1232

Query: 480  SIKKIYGIT-PTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            ++ K+  ++ P +     ++D+  + G   +      +  +  N  +W  +L   + HGN
Sbjct: 1233 NVIKLDCVSDPFVG--TSLVDMYAKCGNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGN 1289

Query: 539  IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
                   AE+ + L   M+S+ + P  +S        F G+ +  S  G+  E
Sbjct: 1290 -------AEEAVNLFKSMKSHGIEPDRVS--------FIGILSACSHAGLTSE 1327



 Score =  191 bits (485), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 124/429 (28%), Positives = 222/429 (51%), Gaps = 2/429 (0%)

Query: 3    LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
             A+ VF  M  L+++SWN++++  A+S   ++ ++LF  +     K   F+L++VL+  +
Sbjct: 957  FAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACS 1016

Query: 63   N-SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
            +    +   + +H  A++ G   D F++ +L+D+YSK G  + A  +F    D D+  W 
Sbjct: 1017 SLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWN 1076

Query: 122  AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            A++         ++A ++F+L+ +S  K +Q  L +  +A         G+ IHA   K 
Sbjct: 1077 AMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKA 1136

Query: 182  GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
            GF+SD  V + ++ MY++ G +     VF  I+  D V+W ++ S   D  + DQ LRI+
Sbjct: 1137 GFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIY 1196

Query: 242  YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            ++M      P+  TF  ++KA S ++ +  G+QLHA+ IK     +  VGTSLVDMY K 
Sbjct: 1197 HRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKC 1256

Query: 302  GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
            G +EDA   F  +  +++  + A++   AQ G AE A+  F+ M+  GI+ +  +    L
Sbjct: 1257 GNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGIL 1316

Query: 362  NGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
            + CS     +     LHS+    G   ++   + LV    + G + +A+ V +    + +
Sbjct: 1317 SACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKAS 1376

Query: 421  ASWNMMIGG 429
            AS N  + G
Sbjct: 1377 ASINRALLG 1385



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 169/324 (52%), Gaps = 13/324 (4%)

Query: 1    MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
            ME A+ +F++  +L++  WNA++ GY    DG+K + LF  +    +K  + +L+T  K 
Sbjct: 1057 MEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKA 1116

Query: 61   FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                  +  G+ +HA AI+ G   D  ++  ++DMY KCG   NA  VF  I  PD VAW
Sbjct: 1117 CGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAW 1176

Query: 121  GAIIT-CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
             ++I+ C+D  G   +A +I++ MR+S V P+++   +L++A++       G  +HA + 
Sbjct: 1177 TSMISGCVD-NGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVI 1235

Query: 180  KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
            K    SD  VG +LV MY + G +    R+F+ +  ++   WNA+      + + ++ + 
Sbjct: 1236 KLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVN 1295

Query: 240  IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG------TS 293
            +F  M   G +P+  +FI IL ACS       G    A+   HS+  ++ +       + 
Sbjct: 1296 LFKSMKSHGIEPDRVSFIGILSACSHA-----GLTSEAYEYLHSMPNDYGIEPEIEHYSC 1350

Query: 294  LVDMYDKSGCLEDAGVAFDSLANK 317
            LVD   ++G +++A    +++  K
Sbjct: 1351 LVDALGRAGLVQEADKVIETMPFK 1374



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 111/222 (50%), Gaps = 6/222 (2%)

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKD 318
           +L+   S  ++  GK  HA  +     G+H +  +L+ MY K G L  A   FD+   +D
Sbjct: 627 LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 686

Query: 319 LFAYTAIITSYAQA-----GEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG 373
           L  + AI+ +YA +     G A+  L  FR +R     +   TLA  L  C     L   
Sbjct: 687 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 746

Query: 374 RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKH 433
             +H  A+K G   D+FVS ALV +Y+KCG + DA  +F     RD   WNMM+ GYV+ 
Sbjct: 747 EGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQL 806

Query: 434 GLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           GL ++A + F      G  PDE +  ++L+  S +   +EGK
Sbjct: 807 GLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVNW-DEGK 847



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 141/324 (43%), Gaps = 30/324 (9%)

Query: 158 LVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQD 217
           L+R    T +   G+  HA I   G   D  + N L++MY + G +S   +VF+    +D
Sbjct: 627 LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 686

Query: 218 SVSWNALFSRFQ-DYESPD----QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFG 272
            V+WNA+   +    +S D    +GL +F  +          T   +LK C +   +   
Sbjct: 687 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 746

Query: 273 KQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQA 332
           + +H + IK  L+ +  V  +LV++Y K G + DA + FD +  +D+  +  ++  Y Q 
Sbjct: 747 EGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQL 806

Query: 333 GEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS 392
           G  + A + F +    G++ +EF++   LNG S V     G+ L               +
Sbjct: 807 GLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEV-NWDEGKWL---------------A 850

Query: 393 TALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV 452
             + A  AK    DD   VF          WN  +   +  G    A+E F  M      
Sbjct: 851 DQVQAYAAKLSLSDDNPDVF---------CWNKKLSECLWAGDNWGAIECFVNMNGLNID 901

Query: 453 PDEITFVVVLSACSHMGLIEEGKK 476
            D +T +VVL+A +    +E GK+
Sbjct: 902 YDAVTLLVVLAAVAGTDDLELGKQ 925


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 216/639 (33%), Positives = 338/639 (52%), Gaps = 51/639 (7%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F  M   N+V+W  L++GY ++G   +    F  M       + ++  + L+    
Sbjct: 153 AQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQE 212

Query: 64  SGY--IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKC-GLADNALKVFYRIKDPDVVAW 120
           SG    K G  +H +  +     D  +   L+ MY  C   A++A  VF  I   + ++W
Sbjct: 213 SGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISW 272

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRES----SVKPNQ-FVLTSLVRATTETGDQRCGESIH 175
            +II+   ++G    A  +F+ M++     S KPN  F   S++    E G +R G  +H
Sbjct: 273 NSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEFSVL----EEG-RRKGREVH 327

Query: 176 AVICKYGFESDTL-VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNAL---------- 224
           A + + G   + + +GN LV+MY ++G ++    VFE +  +DSVSWN+L          
Sbjct: 328 AHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECS 387

Query: 225 ------FSRFQDYE----------------SPDQGLRIFYQMLLKGFKPNMCTFIVILKA 262
                 FS   +Y+                S  Q ++ F QM+  G+  +  TFI IL A
Sbjct: 388 EDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSA 447

Query: 263 CSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA-NKDLFA 321
            SSLS      Q+HA  +K+ L  +  +G +L+  Y K G + +    F  ++  +D  +
Sbjct: 448 VSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVS 507

Query: 322 YTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAV 381
           + ++I+ Y        A+     M  +G + + FT A+ L+ C+ VATL  G  +H+  +
Sbjct: 508 WNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHACGI 567

Query: 382 KTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALE 441
           +     D+ V +ALV MY+KCG ID A   F+   LR+  SWN MI GY +HG GEKAL+
Sbjct: 568 RACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALK 627

Query: 442 AF-RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDI 500
            F RMMLD G  PD +TFV VLSACSH+G +EEG +HF S+ ++Y ++P ++HF+CM+D+
Sbjct: 628 LFTRMMLD-GQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDL 686

Query: 501 LGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG--NIELDEKDAEKLLELEPKMES 558
           LGRAGK  E+ +FI    + PN L+W  +LGAC      N EL  + AE LLELEP+   
Sbjct: 687 LGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAV 746

Query: 559 NYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           NYV  +++ A+  +W D +  R  +    +KKE  CSW+
Sbjct: 747 NYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWV 785



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 144/528 (27%), Positives = 243/528 (46%), Gaps = 60/528 (11%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           +H  +I+ G   + FLS +L+++Y + G   +A K+F  + + ++V W  +I+   Q G 
Sbjct: 121 LHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGK 180

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC--GESIHAVICKYGFESDTLVG 190
             EA   F  M  +   PN +   S +RA  E+G   C  G  IH +I K  + SD +V 
Sbjct: 181 PDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVC 240

Query: 191 NALVSMYMENGRVSYGSR-VFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG- 248
           N L+SMY      +  +R VF+ I  ++S+SWN++ S +           +F  M  +G 
Sbjct: 241 NVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGL 300

Query: 249 ---FKPN--MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGTSLVDMYDKSG 302
              FKPN     F V+ +          G+++HAH I+  L+ N V +G  LV+MY KSG
Sbjct: 301 GFSFKPNDAFSEFSVLEEGRRK------GREVHAHVIRTGLNDNKVAIGNGLVNMYAKSG 354

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQ----AGEAEM--------------------- 337
            + DA   F+ +  KD  ++ ++I+   Q       AEM                     
Sbjct: 355 AIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSD 414

Query: 338 -------ALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
                  A+K F +M   G   +  T  + L+  S ++       +H++ +K     D  
Sbjct: 415 SEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTA 474

Query: 391 VSTALVAMYAKCGSIDDAEAVF-KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDE 449
           +  AL++ Y KCG +++ E +F + S  RD  SWN MI GY+ + L  KA++    M+ +
Sbjct: 475 IGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQK 534

Query: 450 GYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFT 508
           G   D  TF  +LSAC+ +  +E G + H   I+    +   +   + ++D+  + G+  
Sbjct: 535 GQRLDSFTFATILSACASVATLERGMEVHACGIRAC--LESDVVVGSALVDMYSKCGRID 592

Query: 509 EIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKM 556
               F     L  N   W +++   + HG+        EK L+L  +M
Sbjct: 593 YASRFFELMPLR-NVYSWNSMISGYARHGH-------GEKALKLFTRM 632



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 156/324 (48%), Gaps = 13/324 (4%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAES-GDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           E A  +F  MPE + VSWN+++   ++S     + +  F  M       S+ +   +L  
Sbjct: 388 EDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSA 447

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP-DVVA 119
            ++    +    +HA+ ++   + D  +  +L+  Y KCG  +   K+F R+ +  D V+
Sbjct: 448 VSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVS 507

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W ++I+         +A  +   M +   + + F   +++ A         G  +HA   
Sbjct: 508 WNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHACGI 567

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           +   ESD +VG+ALV MY + GR+ Y SR FE +  ++  SWN++ S +  +   ++ L+
Sbjct: 568 RACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALK 627

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAH------TIKHSLDGNHVVGTS 293
           +F +M+L G  P+  TF+ +L AC   S VGF ++   H        + S    H   + 
Sbjct: 628 LFTRMMLDGQPPDHVTFVGVLSAC---SHVGFVEEGFEHFKSMSEVYRLSPRVEHF--SC 682

Query: 294 LVDMYDKSGCLEDAGVAFDSLANK 317
           +VD+  ++G L++ G   +S+  K
Sbjct: 683 MVDLLGRAGKLDEVGDFINSMPMK 706



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 105/212 (49%), Gaps = 15/212 (7%)

Query: 272 GKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQ 331
            ++LH  +IK+   GN  +  +L+++Y + G L  A   FD ++N++L  +  +I+ Y Q
Sbjct: 118 ARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQ 177

Query: 332 AGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC--SPVATLANGRLLHSIAVKTGHLLDM 389
            G+ + A   FR M   G   N +   S L  C  S  +    G  +H +  KT +  D+
Sbjct: 178 NGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDV 237

Query: 390 FVSTALVAMYAKC-GSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
            V   L++MY  C  S +DA +VF G  +R++ SWN +I  Y + G    A + F  M  
Sbjct: 238 VVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQK 297

Query: 449 EG----YVPDEITFVVVLSACSHMGLIEEGKK 476
           EG    + P++        A S   ++EEG++
Sbjct: 298 EGLGFSFKPND--------AFSEFSVLEEGRR 321



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 59/118 (50%)

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
           S+  T  S +N           R LH  ++K G + ++F+S  L+ +Y + G +  A+ +
Sbjct: 97  SSSETFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKL 156

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
           F   + R+  +W  +I GY ++G  ++A   FR M+  G++P+   F   L AC   G
Sbjct: 157 FDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESG 214



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 11/151 (7%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A R F+ MP  NV SWN++++GYA  G G+K + LF  M    +     +   VL  
Sbjct: 591 IDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSA 650

Query: 61  FANSGYIKAG-QVVHAMA--IRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPD 116
            ++ G+++ G +   +M+   RL   ++ F SC +VD+  + G  D        +   P+
Sbjct: 651 CSHVGFVEEGFEHFKSMSEVYRLSPRVEHF-SC-MVDLLGRAGKLDEVGDFINSMPMKPN 708

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFNLMRESS 147
           V+ W  ++       CC+   +   L R ++
Sbjct: 709 VLIWRTVLG-----ACCRANGRNTELGRRAA 734


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 200/607 (32%), Positives = 320/607 (52%), Gaps = 13/607 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMH----LF--CSMKDMEKKFSKFSL 54
           + L++  F  + + N+ SWN++++ Y   G   + M+    LF  C    +   F  ++ 
Sbjct: 70  ISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDF--YTF 127

Query: 55  STVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
             +LK   +   +  G+ VH    ++G   D F++ SLV +YS+ G+ D A KVF  +  
Sbjct: 128 PPILKACVS---LVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPV 184

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
            DV +W A+I+   Q G    A  + N M+   VK +   + S++    ++ D   G  I
Sbjct: 185 KDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLI 244

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H  + K+G +SD  V NAL++MY + GR+     VF+ +  +D VSWN++ + ++    P
Sbjct: 245 HLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDP 304

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS-LDGNHVVGTS 293
              LR F  M L G +P++ T + +    S LSD    + +    I+   LD + V+G +
Sbjct: 305 STALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNA 364

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR-LEGIKS 352
           LV+MY K G +  A   FD L  KD  ++  ++T Y Q G A  A+  +  M        
Sbjct: 365 LVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIP 424

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
           N+ T  S +   S V  L  G  +H+  +K    LD+FV+T L+ +Y KCG ++DA ++F
Sbjct: 425 NQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLF 484

Query: 413 KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE 472
                  +  WN +I     HG GE+AL+ F+ ML E    D ITFV +LSACSH GL++
Sbjct: 485 YEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVD 544

Query: 473 EGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
           EG+K F  ++K YGI P++KH+ CM+D+LGRAG   +    +    + P+A +W  LL A
Sbjct: 545 EGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSA 604

Query: 533 CSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEP 592
           C  +GN EL    +++LLE++ +    YV  S+I A   +W     VR+L   +G++K P
Sbjct: 605 CKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTP 664

Query: 593 SCSWIEV 599
             S + V
Sbjct: 665 GWSSVVV 671



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 134/274 (48%), Gaps = 11/274 (4%)

Query: 264 SSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYT 323
           +S  +V   K+LHA  +      N V+ T L+++Y   G +  +   FD +  K++F++ 
Sbjct: 30  NSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWN 89

Query: 324 AIITSYAQAGEAEMALKCFRKM-RLEG---IKSNEFTLASCLNGCSPVATLANGRLLHSI 379
           +II++Y + G+   A+ C  ++  + G   ++ + +T    L  C    +L +G+ +H  
Sbjct: 90  SIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKAC---VSLVDGKKVHCC 146

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
             K G   D+FV+ +LV +Y++ G +D A  VF    ++D  SWN MI G+ ++G    A
Sbjct: 147 VFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGA 206

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMI 498
           L     M  EG   D IT   +L  C+    +  G   H   +K  +G+   +     +I
Sbjct: 207 LGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLK--HGLDSDVFVSNALI 264

Query: 499 DILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
           ++  + G+  + +    + ++  + + W +++ A
Sbjct: 265 NMYSKFGRLQDAQMVFDQMEVR-DLVSWNSIIAA 297


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 200/607 (32%), Positives = 320/607 (52%), Gaps = 13/607 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMH----LF--CSMKDMEKKFSKFSL 54
           + L++  F  + + N+ SWN++++ Y   G   + M+    LF  C    +   F  ++ 
Sbjct: 70  ISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDF--YTF 127

Query: 55  STVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
             +LK   +   +  G+ VH    ++G   D F++ SLV +YS+ G+ D A KVF  +  
Sbjct: 128 PPILKACVS---LVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPV 184

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
            DV +W A+I+   Q G    A  + N M+   VK +   + S++    ++ D   G  I
Sbjct: 185 KDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLI 244

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H  + K+G +SD  V NAL++MY + GR+     VF+ +  +D VSWN++ + ++    P
Sbjct: 245 HLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDP 304

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS-LDGNHVVGTS 293
              LR F  M L G +P++ T + +    S LSD    + +    I+   LD + V+G +
Sbjct: 305 STALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNA 364

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR-LEGIKS 352
           LV+MY K G +  A   FD L  KD  ++  ++T Y Q G A  A+  +  M        
Sbjct: 365 LVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIP 424

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
           N+ T  S +   S V  L  G  +H+  +K    LD+FV+T L+ +Y KCG ++DA ++F
Sbjct: 425 NQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLF 484

Query: 413 KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE 472
                  +  WN +I     HG GE+AL+ F+ ML E    D ITFV +LSACSH GL++
Sbjct: 485 YEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVD 544

Query: 473 EGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
           EG+K F  ++K YGI P++KH+ CM+D+LGRAG   +    +    + P+A +W  LL A
Sbjct: 545 EGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSA 604

Query: 533 CSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEP 592
           C  +GN EL    +++LLE++ +    YV  S+I A   +W     VR+L   +G++K P
Sbjct: 605 CKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTP 664

Query: 593 SCSWIEV 599
             S + V
Sbjct: 665 GWSSVVV 671



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 134/274 (48%), Gaps = 11/274 (4%)

Query: 264 SSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYT 323
           +S  +V   K+LHA  +      N V+ T L+++Y   G +  +   FD +  K++F++ 
Sbjct: 30  NSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWN 89

Query: 324 AIITSYAQAGEAEMALKCFRKM-RLEG---IKSNEFTLASCLNGCSPVATLANGRLLHSI 379
           +II++Y + G+   A+ C  ++  + G   ++ + +T    L  C    +L +G+ +H  
Sbjct: 90  SIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKAC---VSLVDGKKVHCC 146

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
             K G   D+FV+ +LV +Y++ G +D A  VF    ++D  SWN MI G+ ++G    A
Sbjct: 147 VFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGA 206

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMI 498
           L     M  EG   D IT   +L  C+    +  G   H   +K  +G+   +     +I
Sbjct: 207 LGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLK--HGLDSDVFVSNALI 264

Query: 499 DILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
           ++  + G+  + +    + ++  + + W +++ A
Sbjct: 265 NMYSKFGRLQDAQMVFDQMEVR-DLVSWNSIIAA 297


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 185/600 (30%), Positives = 331/600 (55%), Gaps = 3/600 (0%)

Query: 4   AKRVFKS--MPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           A+ +F S  M + + VSWN++++ +   G+  + + LF  M+++  + + ++  + L+  
Sbjct: 202 ARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQAC 261

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
               +IK G+ +HA+ ++     D ++S +L+ MY+ CG  ++A +VF  +   D V+W 
Sbjct: 262 EGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWN 321

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            +++ + Q     +A   F  M++S  KP+Q  + +++ A+  + +   G  +HA   K+
Sbjct: 322 TLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKH 381

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G +S+  +GN+L+ MY +   V Y    FE +  +D +SW  + + +   E     L + 
Sbjct: 382 GIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLL 441

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            ++ L+    +      IL ACS L      K++H + +K  L  + ++  ++V++Y + 
Sbjct: 442 RKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGL-ADILIQNAIVNVYGEL 500

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
             ++ A   F+S+ +KD+ ++T++IT     G A  AL+ F  +    I+ +  TL S L
Sbjct: 501 ALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVL 560

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
              + +++L  G+ +H   ++ G  L+  ++ +LV MYA+CG++++A  +F     RD  
Sbjct: 561 YAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLI 620

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
            W  MI     HG G+ A++ F  M DE  +PD ITF+ +L ACSH GL+ EGK+HF  +
Sbjct: 621 LWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIM 680

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
           K  Y + P  +H+AC++D+L R+    E  +F+    + P+A VW  LLGAC  H N +L
Sbjct: 681 KNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNNDL 740

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
            E  A+KLL+L  +   NYV  S+  A  GRWND   VR+++    +KK+P CSWIEV+ 
Sbjct: 741 GEVAAKKLLQLNTENSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKKPGCSWIEVEN 800



 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 168/567 (29%), Positives = 279/567 (49%), Gaps = 14/567 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A +VF  M E  + +WNA++     +G   + + L+  M+ +      F+   VLK    
Sbjct: 101 AVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGA 160

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYR--IKDPDVVAWG 121
               + G  +H +A++ G     F+  +L+ MY+KCG    A  +F    ++  D V+W 
Sbjct: 161 FKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWN 220

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           +II+    +G   EA  +F  M+E  V+ N +   S ++A       + G  IHAVI K 
Sbjct: 221 SIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKS 280

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
              +D  V NAL++MY   G++    RVF+++  +D VSWN L S     +     +  F
Sbjct: 281 NHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHF 340

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
             M   G KP+  + + ++ A    +++  G ++HA+ IKH +D N  +G SL+DMY K 
Sbjct: 341 QDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKC 400

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
            C++  G AF+ +  KDL ++T II  YAQ      AL   RK++LE +  +   + S L
Sbjct: 401 CCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSIL 460

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
             CS + +    + +H   +K G L D+ +  A+V +Y +   +D A  VF+    +D  
Sbjct: 461 LACSGLKSEKLIKEIHGYVLKGG-LADILIQNAIVNVYGELALVDYARHVFESINSKDIV 519

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSS 480
           SW  MI   V +GL  +ALE F  +++    PD IT V VL A + +  +++GK+ H   
Sbjct: 520 SWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFL 579

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           I+K + +   I +   ++D+  R G      N     K   + ++W +++ A   HG   
Sbjct: 580 IRKGFFLEGLIAN--SLVDMYARCGTMENARNIFNYVK-QRDLILWTSMINANGMHGC-- 634

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDIS 567
              KDA   ++L  KM    V P  I+
Sbjct: 635 --GKDA---IDLFSKMTDENVLPDHIT 656



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 121/445 (27%), Positives = 217/445 (48%), Gaps = 8/445 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A+RVFKSM   + VSWN LL+G  ++      ++ F  M+D  +K  + S+  ++  
Sbjct: 302 MEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAA 361

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              S  + AG  VHA AI+ G   +  +  SL+DMY KC         F  + + D+++W
Sbjct: 362 SGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISW 421

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             II    Q  C  +A  +   ++   +  +  ++ S++ A +    ++  + IH  + K
Sbjct: 422 TTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLK 481

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G  +D L+ NA+V++Y E   V Y   VFE+I  +D VSW ++ +         + L +
Sbjct: 482 GGL-ADILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALEL 540

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  ++    +P++ T + +L A ++LS +  GK++H   I+       ++  SLVDMY +
Sbjct: 541 FNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYAR 600

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +E+A   F+ +  +DL  +T++I +    G  + A+  F KM  E +  +  T  + 
Sbjct: 601 CGTMENARNIFNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLAL 660

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVS--TALVAMYAKCGSIDDAEAVFKGSALR 418
           L  CS    +  G+  H   +K  + L+ +      LV + A+  S+++A    +   + 
Sbjct: 661 LYACSHSGLVVEGK-QHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIE 719

Query: 419 DTAS-WNMMIGGYVKHG---LGEKA 439
            +A  W  ++G    H    LGE A
Sbjct: 720 PSAEVWCALLGACRIHSNNDLGEVA 744



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 124/458 (27%), Positives = 211/458 (46%), Gaps = 11/458 (2%)

Query: 33  QKVMHLFCSMKDMEKKFS-KFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDK-FLSC 90
           Q + H F        +F  + + S  L+  A+   +  GQ +HA  ++    LD  FL  
Sbjct: 27  QSLTHFFTDPLPTTTRFPLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDT 86

Query: 91  SLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKP 150
             V MY KCG   +A+KVF ++ +  +  W A+I      G   EA +++  MR   V  
Sbjct: 87  KFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSL 146

Query: 151 NQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF 210
           + F    +++A     ++R G  IH V  K G+     V NAL++MY + G +     +F
Sbjct: 147 DAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLF 206

Query: 211 EA--IAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSD 268
           ++  +   D VSWN++ S         + L +F +M   G + N  TF+  L+AC   + 
Sbjct: 207 DSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTF 266

Query: 269 VGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITS 328
           +  G+ +HA  +K +   +  V  +L+ MY   G +EDA   F S+  KD  ++  +++ 
Sbjct: 267 IKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSG 326

Query: 329 YAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLD 388
             Q      A+  F+ M+  G K ++ ++ + +      A L  G  +H+ A+K G   +
Sbjct: 327 MVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSN 386

Query: 389 MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
           M +  +L+ MY KC  +    + F+    +D  SW  +I GY ++     AL   R +  
Sbjct: 387 MHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQL 446

Query: 449 EGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           E    D +    +L ACS       G K    IK+I+G
Sbjct: 447 EKMDVDPMMIGSILLACS-------GLKSEKLIKEIHG 477



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/275 (31%), Positives = 133/275 (48%), Gaps = 7/275 (2%)

Query: 260 LKACSSLSDVGFGKQLHAHTIK--HSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK 317
           L+ C+S   +  G+QLHAH +K  + LD    + T  V MY K G   DA   FD ++ +
Sbjct: 53  LELCASHKALPQGQQLHAHFLKTQNYLDSV-FLDTKFVHMYGKCGSFYDAVKVFDKMSER 111

Query: 318 DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLH 377
            +F + A+I +   AG    A++ +++MR+ G+  + FT    L  C        G  +H
Sbjct: 112 TIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIH 171

Query: 378 SIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR--DTASWNMMIGGYVKHGL 435
            +AVK G+   +FV  AL+AMYAKCG +  A  +F    +   D  SWN +I  +V  G 
Sbjct: 172 GVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGE 231

Query: 436 GEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFA 495
             +AL  FR M + G   +  TFV  L AC     I+ G+   + I K    T      A
Sbjct: 232 SLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNA 291

Query: 496 CMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
            +I +    G+  + E  + ++ L  + + W  LL
Sbjct: 292 -LIAMYANCGQMEDAER-VFKSMLFKDCVSWNTLL 324


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 181/597 (30%), Positives = 321/597 (53%), Gaps = 1/597 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F  M E   VSW  L+ GY +S   ++   L+  M+    +    +L T+L GF  
Sbjct: 93  ARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGE 152

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                    +H   I+LG   +  +  SLVD Y K      A ++F  + + D V + ++
Sbjct: 153 LETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSL 212

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +T    +G  +EA ++F  +  S +KP+ F   +L+ A     D + G+ +H  + K  F
Sbjct: 213 MTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNF 272

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             +  VGNAL+  Y ++ +V    ++F  +   D +S+N + + +       +   +F +
Sbjct: 273 VWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRK 332

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           +    F      F  +L   +S  ++  G+Q+H   I    +    V  +LVDMY K   
Sbjct: 333 LQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNG 392

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
            ++A   FD++A K    +TA+I++Y Q G+ E  +  F  MR  G+ +++ T AS L  
Sbjct: 393 DKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRA 452

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +A+++ GR LHS+ +++G + +++  +AL+  YAKCG + DA   F     R++ SW
Sbjct: 453 CANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSW 512

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I  Y ++G  +  L +F+ M+  GY PD ++F+ VLSACSH G +EE   HF+S+ +
Sbjct: 513 NALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQ 572

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
           IY +TP  +H+  M+D+L R G+F E E  +TE    P+ ++W ++L +C  H N EL +
Sbjct: 573 IYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAK 632

Query: 544 KDAEKLLELEP-KMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           K A++L  +E  +  + Y+  S+I A  G+W++ + V+  +  +G++K P+ SW+E+
Sbjct: 633 KAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEI 689



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 127/490 (25%), Positives = 237/490 (48%), Gaps = 3/490 (0%)

Query: 52  FSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSL-VDMYSKCGLADNALKVFY 110
           F+ +T    F  + +++ G +VHA  +         +S ++ +  + K G    A ++F 
Sbjct: 39  FNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFD 98

Query: 111 RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC 170
            + +   V+W  +I    Q    +EA +++  MR   ++P+   L +L+    E   +  
Sbjct: 99  GMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNV 158

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
              IH  + K G+E + +V N+LV  Y +   +   S++F+ + ++D+V++N+L + + +
Sbjct: 159 IVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSN 218

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
               ++ + +F ++   G KP+  TF  +L A   L D  FG+Q+H   +K +   N  V
Sbjct: 219 EGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFV 278

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
           G +L+D Y K   +++ G  F  +   D  +Y  +ITSYA  G+ + +   FRK++    
Sbjct: 279 GNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRF 338

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
              +F  A+ L+  +    L  GR +H  A+  G   +  V  ALV MYAKC    +A+ 
Sbjct: 339 DRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQK 398

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           +F   A + T  W  MI  YV+ G  E+ +  F  M   G   D+ TF  +L AC+++  
Sbjct: 399 IFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLAS 458

Query: 471 IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
           I  G++  S + +  G    +   + ++D   + G  T+      E     N++ W  L+
Sbjct: 459 ISLGRQLHSLLIR-SGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMP-ERNSVSWNALI 516

Query: 531 GACSWHGNIE 540
            A + +GN++
Sbjct: 517 SAYAQNGNVD 526



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/457 (25%), Positives = 216/457 (47%), Gaps = 17/457 (3%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           LA ++FK M   + V++N+L+ GY+  G  ++ + LF  + +   K S F+ + +L    
Sbjct: 193 LASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAV 252

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
                K GQ VH   ++     + F+  +L+D YSK    D   K+FY + + D +++  
Sbjct: 253 GLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNV 312

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +IT     G  +E+  +F  ++ +     QF   +L+   T + + R G  IH      G
Sbjct: 313 VITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVG 372

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
              ++ V NALV MY +        ++F+ IA + +V W A+ S +      ++G+ +F 
Sbjct: 373 ANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFS 432

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            M   G   +  TF  IL+AC++L+ +  G+QLH+  I+     N   G++L+D Y K G
Sbjct: 433 DMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCG 492

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
           C+ DA  +F  +  ++  ++ A+I++YAQ G  +  L  F++M   G K +  +  S L+
Sbjct: 493 CMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLS 552

Query: 363 GCSPVATLANG-------RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
            CS    +            ++ +  K  H       T++V +  + G  D+AE +    
Sbjct: 553 ACSHCGFVEEALWHFNSMTQIYEVTPKREHY------TSMVDVLCRNGRFDEAEKLMTEM 606

Query: 416 ALRDTA-SWNMMIGG---YVKHGLGEKALEAFRMMLD 448
               +   W+ ++     +  H L +KA +    M D
Sbjct: 607 PFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMED 643


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 203/605 (33%), Positives = 338/605 (55%), Gaps = 15/605 (2%)

Query: 4   AKRVFKSMPEL-NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG-F 61
           A+RVF  M  L ++VSW A+      +G  Q+ + L   M +   + + F+L       F
Sbjct: 98  ARRVFDGMRGLRDLVSWTAMAFCLTRNGAEQEALVLLGEMLESGLRPNAFTLCAAAHACF 157

Query: 62  ANSGYIKAGQVVHAMAIRLG-CALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
               +  +G  V   AI+ G    D  + C+L+DM+++ G    A KVF  + +  VV W
Sbjct: 158 PGELFRSSGGTVLGFAIKTGFWGTDVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVW 217

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +IT   Q GC  +A ++F  M E   +P+ + ++S+V A  E G    G+ +H+++ +
Sbjct: 218 TLMITRYVQGGCAGKAVELFLGMLEDGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLR 277

Query: 181 YGFESDTLVGNALVSMY----MENGRVSYGSRVFEAIAHQDSVSWNALFSRF-QDYESPD 235
            G  SDT V   LV MY    ME   +    +VF+ +   + +SW AL S + Q     +
Sbjct: 278 LGLVSDTCVSCGLVDMYTKLQMEQS-MECARKVFKRMPTHNVMSWTALISGYVQCGGQEN 336

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
             + +  +ML +  +PN  T+  +LKAC++LSD   G+Q+HA  +K S+   +VVG +LV
Sbjct: 337 NAVELLCEMLNESIEPNHLTYSSLLKACANLSDQDSGRQIHARVMKTSIGNVNVVGNALV 396

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
            MY +SGC+E+A  AFD L  ++L + ++ I    ++  +  +     ++    +  + F
Sbjct: 397 SMYAESGCMEEARKAFDQLYERNLLSTSSDIGETGRSNASWSS-----QIESMDVGVSTF 451

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF-KG 414
           T AS L+  + V     G+ LH++++KTG   D  +S +LV+MY++CG +DDA   F + 
Sbjct: 452 TFASLLSAAATVGLPTKGQQLHALSIKTGFESDKGISNSLVSMYSRCGYLDDACRAFDEM 511

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
               +  SW  +I    KHG  E+AL  F  M+  G  P+++T++ VLSACSH+GL++EG
Sbjct: 512 EDDHNVISWTSIISALAKHGHAERALSLFHDMILSGVKPNDVTYIAVLSACSHVGLVKEG 571

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
           K++F S++K + + P ++H+ACM+D+L R+G   E   FI E     +ALVW+ LLGAC 
Sbjct: 572 KEYFRSMQKDHRLIPRMEHYACMVDLLARSGLVQEALEFINEMPCKADALVWKTLLGACR 631

Query: 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSC 594
            + NIE+ E  A  +++LEP+  + YV  S++ A  G W++ + +R+L+  + + KE   
Sbjct: 632 TYENIEIGEIAARHVIDLEPQDPAPYVLLSNLYAHGGLWDEVARIRSLMRHRNLSKETGL 691

Query: 595 SWIEV 599
           SW+ V
Sbjct: 692 SWMHV 696



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 140/492 (28%), Positives = 236/492 (47%), Gaps = 24/492 (4%)

Query: 85  DKFLSCSLVDMYSKCGLADNALKVFYRIKD-PDVVAWGAIITCLDQQGCCQEAAKIFNLM 143
           D  ++ SL+ MYSKCG    A +VF  ++   D+V+W A+  CL + G  QEA  +   M
Sbjct: 78  DALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLTRNGAEQEALVLLGEM 137

Query: 144 RESSVKPNQFVLTSLVRATTETGD--QRCGESIHAVICKYGF-ESDTLVGNALVSMYMEN 200
            ES ++PN F L +   A    G+  +  G ++     K GF  +D  VG AL+ M+  N
Sbjct: 138 LESGLRPNAFTLCAAAHACF-PGELFRSSGGTVLGFAIKTGFWGTDVSVGCALIDMFARN 196

Query: 201 GRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVIL 260
           G +    +VF  +  +  V W  + +R+       + + +F  ML  GF+P+  T   ++
Sbjct: 197 GDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGMLEDGFEPDGYTMSSMV 256

Query: 261 KACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK---SGCLEDAGVAFDSLANK 317
            AC+     G G+QLH+  ++  L  +  V   LVDMY K      +E A   F  +   
Sbjct: 257 SACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARKVFKRMPTH 316

Query: 318 DLFAYTAIITSYAQAGEAE-MALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL 376
           ++ ++TA+I+ Y Q G  E  A++   +M  E I+ N  T +S L  C+ ++   +GR +
Sbjct: 317 NVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSLLKACANLSDQDSGRQI 376

Query: 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
           H+  +KT       V  ALV+MYA+ G +++A   F     R+  S +  IG   + G  
Sbjct: 377 HARVMKTSIGNVNVVGNALVSMYAESGCMEEARKAFDQLYERNLLSTSSDIG---ETGRS 433

Query: 437 EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFA 495
             +  +    +D G      TF  +LSA + +GL  +G++ H  SIK  +     I +  
Sbjct: 434 NASWSSQIESMDVGV--STFTFASLLSAAATVGLPTKGQQLHALSIKTGFESDKGISN-- 489

Query: 496 CMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPK 555
            ++ +  R G   +      E +   N + W +++ A + HG+       AE+ L L   
Sbjct: 490 SLVSMYSRCGYLDDACRAFDEMEDDHNVISWTSIISALAKHGH-------AERALSLFHD 542

Query: 556 MESNYVFPSDIS 567
           M  + V P+D++
Sbjct: 543 MILSGVKPNDVT 554



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 157/311 (50%), Gaps = 10/311 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQK--VMHLFCSMKDMEKKFSKFSLSTVL 58
           ME A++VFK MP  NV+SW AL++GY + G GQ+   + L C M +   + +  + S++L
Sbjct: 303 MECARKVFKRMPTHNVMSWTALISGYVQCG-GQENNAVELLCEMLNESIEPNHLTYSSLL 361

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
           K  AN     +G+ +HA  ++        +  +LV MY++ G  + A K F ++ + +++
Sbjct: 362 KACANLSDQDSGRQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEARKAFDQLYERNLL 421

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +     T  D     +  A   + +    V  + F   SL+ A    G    G+ +HA+ 
Sbjct: 422 S-----TSSDIGETGRSNASWSSQIESMDVGVSTFTFASLLSAAATVGLPTKGQQLHALS 476

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSV-SWNALFSRFQDYESPDQG 237
            K GFESD  + N+LVSMY   G +    R F+ +    +V SW ++ S    +   ++ 
Sbjct: 477 IKTGFESDKGISNSLVSMYSRCGYLDDACRAFDEMEDDHNVISWTSIISALAKHGHAERA 536

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK-HSLDGNHVVGTSLVD 296
           L +F+ M+L G KPN  T+I +L ACS +  V  GK+      K H L         +VD
Sbjct: 537 LSLFHDMILSGVKPNDVTYIAVLSACSHVGLVKEGKEYFRSMQKDHRLIPRMEHYACMVD 596

Query: 297 MYDKSGCLEDA 307
           +  +SG +++A
Sbjct: 597 LLARSGLVQEA 607



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 158/315 (50%), Gaps = 21/315 (6%)

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAI-AHQDSVSWNALFSRFQDYESPDQGLRIF 241
            ++D LV N+L++MY + G V    RVF+ +   +D VSW A+        +  + L + 
Sbjct: 75  LDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLTRNGAEQEALVLL 134

Query: 242 YQMLLKGFKPNMCTFIVILKAC--------SSLSDVGFGKQLHAHTIKHSLDGNHV-VGT 292
            +ML  G +PN  T      AC        S  + +GF        IK    G  V VG 
Sbjct: 135 GEMLESGLRPNAFTLCAAAHACFPGELFRSSGGTVLGFA-------IKTGFWGTDVSVGC 187

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           +L+DM+ ++G L  A   F+ L  + +  +T +IT Y Q G A  A++ F  M  +G + 
Sbjct: 188 ALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGMLEDGFEP 247

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC---GSIDDAE 409
           + +T++S ++ C+   +   G+ LHS+ ++ G + D  VS  LV MY K     S++ A 
Sbjct: 248 DGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECAR 307

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGE-KALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
            VFK     +  SW  +I GYV+ G  E  A+E    ML+E   P+ +T+  +L AC+++
Sbjct: 308 KVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSLLKACANL 367

Query: 469 GLIEEGKKHFSSIKK 483
              + G++  + + K
Sbjct: 368 SDQDSGRQIHARVMK 382



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 2/95 (2%)

Query: 373 GRLLHSIAVKTGHL-LDMFVSTALVAMYAKCGSIDDAEAVFKG-SALRDTASWNMMIGGY 430
           GR LH   + T  L  D  V+ +L+ MY+KCG +  A  VF G   LRD  SW  M    
Sbjct: 62  GRALHRRLLGTEVLDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCL 121

Query: 431 VKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC 465
            ++G  ++AL     ML+ G  P+  T      AC
Sbjct: 122 TRNGAEQEALVLLGEMLESGLRPNAFTLCAAAHAC 156


>gi|449436034|ref|XP_004135799.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 205/601 (34%), Positives = 322/601 (53%), Gaps = 1/601 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A++VF  +P+   V  NA++NGY ++      + L   M     +F  ++ +  LK 
Sbjct: 105 LENARKVFDEIPQPKTVLCNAMVNGYLQNERYNDCIELLKMMSRCHLEFDSYTCNFALKA 164

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                  + G  V  +A+  G A  +FL  S+++   K G    A   F+++ + DVV W
Sbjct: 165 CMFLLDYEMGMEVIGLAVCKGLAGGRFLGSSILNFLVKTGDIMCAQFFFHQMVEKDVVCW 224

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I    Q+G  +E   +F  M  + ++P+   + SL+++  E  +   G+ +H  +  
Sbjct: 225 NVMIGGFMQEGLFREGYNLFLDMLYNKIEPSAVTMISLIQSCGEMRNLTFGKCMHGFVLG 284

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +G   DT V   L+ MY ++G V     +FE +  ++ VSWN + S +       + LR+
Sbjct: 285 FGMSRDTRVLTTLIDMYCKSGDVESARWIFENMPSRNLVSWNVMISGYVQNGLLVETLRL 344

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F ++++     +  T + +++ CS  +D+  GK LH    +  LD N V+ T++VD+Y K
Sbjct: 345 FQKLIMDDVGFDSGTVVSLIQLCSRTADLDGGKILHGFIYRRGLDLNLVLPTAIVDLYAK 404

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L  A   F+ + NK++ ++TA++   AQ G A  ALK F +M+ E +  N  TL S 
Sbjct: 405 CGSLAYASSVFERMKNKNVISWTAMLVGLAQNGHARDALKLFDQMQNERVTFNALTLVSL 464

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK-GSALRD 419
           +  C+ +  L  GR +H+   +     ++ V TAL+ MYAKC  I+ AE VFK G   +D
Sbjct: 465 VYCCTLLGLLREGRSVHATLTRFHFASEVVVMTALIDMYAKCSKINSAEMVFKYGLTPKD 524

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
              +N MI GY  HGLG KAL  +  M  EG  P+E TFV +LSACSH GL+EEG   F 
Sbjct: 525 VILYNSMISGYGMHGLGHKALCVYHRMNREGLQPNESTFVSLLSACSHSGLVEEGIALFQ 584

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           ++ K +  TPT K +AC++D+L RAG+  + E  I +   TP + + E LL  C  H +I
Sbjct: 585 NMVKDHNTTPTDKLYACIVDLLSRAGRLRQAEELINQMPFTPTSGILETLLNGCLLHKDI 644

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           EL  K A++LL LE +  S Y+  S+I A   RW+    VR L+  Q IKK P  S IEV
Sbjct: 645 ELGVKLADRLLSLESRNPSIYITLSNIYAKASRWDSVKYVRGLMMEQEIKKIPGYSSIEV 704

Query: 600 D 600
           +
Sbjct: 705 N 705



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 117/455 (25%), Positives = 226/455 (49%), Gaps = 5/455 (1%)

Query: 85  DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMR 144
           D+FL   LV  YS  G  +NA KVF  I  P  V   A++    Q     +  ++  +M 
Sbjct: 88  DQFLVAKLVAAYSSLGCLENARKVFDEIPQPKTVLCNAMVNGYLQNERYNDCIELLKMMS 147

Query: 145 ESSVKPNQFVLTSLVRATTETGDQRCG-ESIHAVICKYGFESDTLVGNALVSMYMENGRV 203
              ++ + +     ++A     D   G E I   +CK G      +G+++++  ++ G +
Sbjct: 148 RCHLEFDSYTCNFALKACMFLLDYEMGMEVIGLAVCK-GLAGGRFLGSSILNFLVKTGDI 206

Query: 204 SYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKAC 263
                 F  +  +D V WN +   F       +G  +F  ML    +P+  T I ++++C
Sbjct: 207 MCAQFFFHQMVEKDVVCWNVMIGGFMQEGLFREGYNLFLDMLYNKIEPSAVTMISLIQSC 266

Query: 264 SSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYT 323
             + ++ FGK +H   +   +  +  V T+L+DMY KSG +E A   F+++ +++L ++ 
Sbjct: 267 GEMRNLTFGKCMHGFVLGFGMSRDTRVLTTLIDMYCKSGDVESARWIFENMPSRNLVSWN 326

Query: 324 AIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKT 383
            +I+ Y Q G     L+ F+K+ ++ +  +  T+ S +  CS  A L  G++LH    + 
Sbjct: 327 VMISGYVQNGLLVETLRLFQKLIMDDVGFDSGTVVSLIQLCSRTADLDGGKILHGFIYRR 386

Query: 384 GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF 443
           G  L++ + TA+V +YAKCGS+  A +VF+    ++  SW  M+ G  ++G    AL+ F
Sbjct: 387 GLDLNLVLPTAIVDLYAKCGSLAYASSVFERMKNKNVISWTAMLVGLAQNGHARDALKLF 446

Query: 444 RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGR 503
             M +E    + +T V ++  C+ +GL+ EG+   +++ + +  +  +   A +ID+  +
Sbjct: 447 DQMQNERVTFNALTLVSLVYCCTLLGLLREGRSVHATLTRFHFASEVVVMTA-LIDMYAK 505

Query: 504 AGKFTEIENFITETKLTP-NALVWENLLGACSWHG 537
             K    E  + +  LTP + +++ +++     HG
Sbjct: 506 CSKINSAE-MVFKYGLTPKDVILYNSMISGYGMHG 539



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 108/258 (41%), Gaps = 2/258 (0%)

Query: 280 IKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMAL 339
           I + + G+  +   LV  Y   GCLE+A   FD +         A++  Y Q       +
Sbjct: 81  ITNPIYGDQFLVAKLVAAYSSLGCLENARKVFDEIPQPKTVLCNAMVNGYLQNERYNDCI 140

Query: 340 KCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMY 399
           +  + M    ++ + +T    L  C  +     G  +  +AV  G     F+ ++++   
Sbjct: 141 ELLKMMSRCHLEFDSYTCNFALKACMFLLDYEMGMEVIGLAVCKGLAGGRFLGSSILNFL 200

Query: 400 AKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFV 459
            K G I  A+  F     +D   WN+MIGG+++ GL  +    F  ML     P  +T +
Sbjct: 201 VKTGDIMCAQFFFHQMVEKDVVCWNVMIGGFMQEGLFREGYNLFLDMLYNKIEPSAVTMI 260

Query: 460 VVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKL 519
            ++ +C  M  +  GK     +   +G++   +    +ID+  ++G   E   +I E   
Sbjct: 261 SLIQSCGEMRNLTFGKCMHGFVLG-FGMSRDTRVLTTLIDMYCKSGD-VESARWIFENMP 318

Query: 520 TPNALVWENLLGACSWHG 537
           + N + W  ++     +G
Sbjct: 319 SRNLVSWNVMISGYVQNG 336


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 191/605 (31%), Positives = 334/605 (55%), Gaps = 5/605 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSK--FSLSTVL 58
           +E A +VF  MP+ N+VSWN+++    E+G  ++   LF  + + ++       ++ TV+
Sbjct: 247 VESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVI 306

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
              A  G ++ G V H +A++LG   +  ++ SL+DMYSKCG    A +V +   + +V+
Sbjct: 307 PLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEA-RVLFDTNEKNVI 365

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMR-ESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           +W ++I    +    + A ++   M+ E  VK N+  L +++    E       + IH  
Sbjct: 366 SWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGY 425

Query: 178 ICKYGF-ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
             ++GF +SD LV NA V+ Y + G + Y   VF  +  +   SWNAL         P +
Sbjct: 426 ALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRK 485

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            L ++  M   G +P++ T   +L AC+ L  +  GK++H   +++  + +  +  SLV 
Sbjct: 486 ALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVS 545

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           +Y + G +  A + FD++  K+L  +  +I  ++Q      AL  F +M    I  +E +
Sbjct: 546 LYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEIS 605

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
           +   L  CS V+ L  G+ LH  AVK+      FV+ +L+ MYAKCG ++ ++ +F    
Sbjct: 606 IIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVH 665

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
           L+   +WN++I GY  HG G KA+E F+ M + G+ PD +TF+ +L+AC+H GL+ EG +
Sbjct: 666 LKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLE 725

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
           +   ++ ++GI P ++H+AC++D+LGRAG+  E    + E    P++ +W +LL +C  +
Sbjct: 726 YLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNY 785

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSW 596
            ++++ EK A KLLEL P    NYV  S+  A  G+W++   +R  +   G++K+  CSW
Sbjct: 786 RDLDIGEKVANKLLELGPDKAENYVLISNFYARLGKWDEVRKMRQRMKEIGLQKDAGCSW 845

Query: 597 IEVDG 601
           IE+ G
Sbjct: 846 IEIGG 850



 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 143/571 (25%), Positives = 268/571 (46%), Gaps = 25/571 (4%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDM-EKKFSKFSLSTVLKGFANSG 65
           VF +    N+  WNALL+GY  +   +  + +F  M  + E     F+L  V+K      
Sbjct: 151 VFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVY 210

Query: 66  YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT 125
            ++ G+ VH  A++     D F+  +L+ MY K G  ++A+KVF ++   ++V+W +++ 
Sbjct: 211 DVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMY 270

Query: 126 CLDQQGCCQEAAKIFN--LMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
              + G  +E+  +F   L  +  + P+   + +++      G+ R G   H +  K G 
Sbjct: 271 ACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGL 330

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             +  V ++L+ MY + G +     +F+    ++ +SWN++   +    S D+  R  ++
Sbjct: 331 CGELKVNSSLLDMYSKCGYLCEARVLFDT-NEKNVISWNSMIGGY----SKDRDFRGAFE 385

Query: 244 MLLK-----GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS-LDGNHVVGTSLVDM 297
           +L K       K N  T + +L  C         K++H + ++H  +  + +V  + V  
Sbjct: 386 LLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAG 445

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K G L  A   F  + +K + ++ A+I  + Q G    AL  +  MR  G++ + FT+
Sbjct: 446 YAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTI 505

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           AS L+ C+ + +L+ G+ +H   ++ G  LD F+  +LV++Y +CG I  A+  F     
Sbjct: 506 ASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEE 565

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK- 476
           ++   WN MI G+ ++     AL+ F  ML     PDEI+ +  L ACS +  +  GK+ 
Sbjct: 566 KNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKEL 625

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
           H  ++K    +T        +ID+  + G   + +N      L    + W  L+     H
Sbjct: 626 HCFAVKS--HLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLK-GEVTWNVLITGYGIH 682

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           G+         K +EL   M++    P  ++
Sbjct: 683 GH-------GRKAIELFKSMQNAGFRPDSVT 706



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 151/577 (26%), Positives = 276/577 (47%), Gaps = 43/577 (7%)

Query: 19  WNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMA- 77
           ++ +++ + +  +  K  H  C+  ++ + F+   L + L    +S   K  Q++  +  
Sbjct: 44  FSPIISSHKKQQNASKHFHNLCNTGNLNQAFN--FLQSNLNDVVSSSNSKPKQLIGLLLQ 101

Query: 78  -------IRLGCALDKFLSCS------------LVDMYSKCGLADNALKVFYRIKDPDVV 118
                  I +G  +  F+S S            LV MYS C    ++  VF   +  ++ 
Sbjct: 102 LCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRKNLF 161

Query: 119 AWGAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
            W A+++   +    ++A  +F  ++  +   P+ F L  +++A     D R GE++H  
Sbjct: 162 LWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGF 221

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
             K    SD  VGNAL++MY + G V    +VF+ +  ++ VSWN++     +    ++ 
Sbjct: 222 ALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEES 281

Query: 238 LRIFYQMLL--KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
             +F  +L   +G  P++ T + ++  C+   +V  G   H   +K  L G   V +SL+
Sbjct: 282 YGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLL 341

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG-IKSNE 354
           DMY K G L +A V FD+   K++ ++ ++I  Y++  +   A +  RKM++E  +K NE
Sbjct: 342 DMYSKCGYLCEARVLFDT-NEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNE 400

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLL-DMFVSTALVAMYAKCGSIDDAEAVFK 413
            TL + L  C         + +H  A++ G +  D  V+ A VA YAKCGS+  AE VF 
Sbjct: 401 VTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFC 460

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
           G   +  +SWN +IGG+V++G   KAL+ + +M   G  PD  T   +LSAC+ +  +  
Sbjct: 461 GMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSC 520

Query: 474 GKK-HFSSIKKIYGITPTIKHFAC--MIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
           GK+ H S ++  +     +  F C  ++ +  + GK    + F    +   N + W  ++
Sbjct: 521 GKEIHGSMLRNGF----ELDEFICISLVSLYVQCGKILLAKLFFDNME-EKNLVCWNTMI 575

Query: 531 GACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
              S       D       L++  +M S+ ++P +IS
Sbjct: 576 NGFS-QNEFPFDA------LDMFHQMLSSKIWPDEIS 605


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 184/596 (30%), Positives = 326/596 (54%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A RVF+ MPE N+V W+A++ GY ++    + + LF  M  +    S+ + ++V +  A 
Sbjct: 192 AFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAG 251

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
               K G  +H  A++   A D  +  + +DMY+KC    +A KVF  + +P   ++ AI
Sbjct: 252 LSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQSYNAI 311

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    +Q    +A  IF  ++ +++  ++  L+  + A +       G  +H +  K G 
Sbjct: 312 IVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGLAVKCGL 371

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             +  V N ++ MY + G +     +FE +  +D+VSWNA+ +  +  E   + L +F  
Sbjct: 372 GFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVS 431

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           ML    +P+  T+  ++KAC+    + +G ++H   IK  +  +  VG++LVDMY K G 
Sbjct: 432 MLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGM 491

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L +A      L  K   ++ +II+ ++   ++E A + F +M   GI  + +T A+ L+ 
Sbjct: 492 LMEAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDV 551

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +AT+  G+ +H+  +K     D+++++ LV MY+KCG++ D+  +F+ +  RD  +W
Sbjct: 552 CANMATIELGKQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAPKRDYVTW 611

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           + MI  Y  HGLGEKA+  F  M      P+   F+ VL AC+HMG +++G  +F  +  
Sbjct: 612 SAMICAYAYHGLGEKAINLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQKMLS 671

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            YG+ P ++H++CM+D+LGR+G+  E    I       + ++W  LL  C   GN+E+ E
Sbjct: 672 HYGLDPQMEHYSCMVDLLGRSGQVNEALKLIESMPFEADDVIWRTLLSNCKMQGNVEVAE 731

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           K    LL+L+P+  S YV  +++ A  G W + + +R+++ +  +KKEP CSWIEV
Sbjct: 732 KAFNSLLQLDPQDSSAYVLLANVYAIVGMWGEVAKMRSIMKNCKLKKEPGCSWIEV 787



 Score =  246 bits (628), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 164/562 (29%), Positives = 271/562 (48%), Gaps = 16/562 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A+ +F SMPE +VVSWN+LL+ Y  +G  +K + +F  M+ ++      + + +LK 
Sbjct: 88  MGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFAVILKA 147

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +       G  VH +AI++G   D     +LVDMYSKC   D+A +VF  + + ++V W
Sbjct: 148 CSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDDAFRVFREMPERNLVCW 207

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    Q     E  K+F  M +  +  +Q    S+ R+       + G  +H    K
Sbjct: 208 SAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALK 267

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR- 239
             F  D+++G A + MY +  R+    +VF  + +    S+NA+      Y   DQGL+ 
Sbjct: 268 SDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQSYNAIIV---GYARQDQGLKA 324

Query: 240 --IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
             IF  +       +  +    L ACS +     G QLH   +K  L  N  V  +++DM
Sbjct: 325 LDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGLAVKCGLGFNICVANTILDM 384

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K G L +A + F+ +  +D  ++ AII ++ Q  E    L  F  M    ++ ++FT 
Sbjct: 385 YGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTY 444

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
            S +  C+    L  G  +H   +K+G  LD FV +ALV MY KCG + +AE +      
Sbjct: 445 GSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLEE 504

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           + T SWN +I G+      E A   F  ML+ G +PD  T+  VL  C++M  IE GK+ 
Sbjct: 505 KTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANMATIELGKQI 564

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
            + I K+  +   +   + ++D+  + G   +    + E     + + W  ++ A ++HG
Sbjct: 565 HAQILKL-QLHSDVYIASTLVDMYSKCGNMQD-SRLMFEKAPKRDYVTWSAMICAYAYHG 622

Query: 538 NIELDEK-----DAEKLLELEP 554
              L EK     +  +LL ++P
Sbjct: 623 ---LGEKAINLFEEMQLLNVKP 641



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 139/547 (25%), Positives = 253/547 (46%), Gaps = 38/547 (6%)

Query: 51  KFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFY 110
           K + S +L+  +N   +  G+ VH   I  G     +++  L+  Y K    + A KVF 
Sbjct: 6   KLTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFD 65

Query: 111 RIK-------------------------------DPDVVAWGAIITCLDQQGCCQEAAKI 139
           R+                                + DVV+W ++++C    G  +++ +I
Sbjct: 66  RMPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEI 125

Query: 140 FNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYME 199
           F  MR   +  +      +++A +   D   G  +H +  + GFE+D + G+ALV MY +
Sbjct: 126 FVRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSK 185

Query: 200 NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVI 259
             ++    RVF  +  ++ V W+A+ + +   +   +GL++F  ML  G   +  T+  +
Sbjct: 186 CKKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASV 245

Query: 260 LKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL 319
            ++C+ LS    G QLH H +K     + ++GT+ +DMY K   + DA   F++L N   
Sbjct: 246 FRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPR 305

Query: 320 FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSI 379
            +Y AII  YA+  +   AL  F+ ++   +  +E +L+  L  CS +     G  LH +
Sbjct: 306 QSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGL 365

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
           AVK G   ++ V+  ++ MY KCG++ +A  +F+    RD  SWN +I  + ++    K 
Sbjct: 366 AVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKT 425

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMI 498
           L  F  ML     PD+ T+  V+ AC+    +  G + H   IK   G+   +   + ++
Sbjct: 426 LSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVG--SALV 483

Query: 499 DILGRAGKFTEIENFITETKLTPNALV-WENLLGACSWHGNIELDEKDAEKLLELEPKME 557
           D+ G+ G   E E      +L     V W +++   S     E  ++   ++LE+   + 
Sbjct: 484 DMYGKCGMLMEAEKI--HARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEM-GIIP 540

Query: 558 SNYVFPS 564
            NY + +
Sbjct: 541 DNYTYAT 547



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 114/389 (29%), Positives = 183/389 (47%), Gaps = 19/389 (4%)

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           + D +  N L+  Y   G + +   +F+++  +D VSWN+L S +       + + IF +
Sbjct: 69  QRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFVR 128

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M       +  TF VILKACS + D G G Q+H   I+   + + V G++LVDMY K   
Sbjct: 129 MRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKK 188

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L+DA   F  +  ++L  ++A+I  Y Q       LK F+ M   G+  ++ T AS    
Sbjct: 189 LDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRS 248

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ ++    G  LH  A+K+    D  + TA + MYAKC  + DA  VF         S+
Sbjct: 249 CAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQSY 308

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG-KKHFSSIK 482
           N +I GY +   G KAL+ F+ +       DEI+    L+ACS +    EG + H  ++K
Sbjct: 309 NAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGLAVK 368

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENL--LGACSWHGNIE 540
              G    + +   ++D+ G+ G   E              L++E +    A SW+  I 
Sbjct: 369 CGLGFNICVAN--TILDMYGKCGALMEA------------CLIFEEMERRDAVSWNAIIA 414

Query: 541 LDEKDAE--KLLELEPKMESNYVFPSDIS 567
             E++ E  K L L   M  + + P D +
Sbjct: 415 AHEQNEEIVKTLSLFVSMLRSTMEPDDFT 443



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 9/167 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ ++ +F+  P+ + V+W+A++  YA  G G+K ++LF  M+ +  K +     +VL+ 
Sbjct: 593 MQDSRLMFEKAPKRDYVTWSAMICAYAYHGLGEKAINLFEEMQLLNVKPNHTIFISVLRA 652

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALD---KFLSCSLVDMYSKCGLADNALKVFYRIK-DP 115
            A+ GY+  G      M    G  LD   +  SC +VD+  + G  + ALK+   +  + 
Sbjct: 653 CAHMGYVDKGLHYFQKMLSHYG--LDPQMEHYSC-MVDLLGRSGQVNEALKLIESMPFEA 709

Query: 116 DVVAWGAIITCLDQQGCCQEAAKIFN-LMRESSVKPNQFVLTSLVRA 161
           D V W  +++    QG  + A K FN L++      + +VL + V A
Sbjct: 710 DDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDSSAYVLLANVYA 756



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 59/146 (40%), Gaps = 31/146 (21%)

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
           + + T +  L  CS +  L  G+ +H+  + TG +  ++V+  L+  Y K   ++ A  V
Sbjct: 4   TKKLTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKV 63

Query: 412 FKGSALRDTASWNMMIGG-------------------------------YVKHGLGEKAL 440
           F     RD  SWN +I G                               Y+ +G+  K++
Sbjct: 64  FDRMPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSI 123

Query: 441 EAFRMMLDEGYVPDEITFVVVLSACS 466
           E F  M       D  TF V+L ACS
Sbjct: 124 EIFVRMRSLKIPHDYATFAVILKACS 149


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 200/585 (34%), Positives = 313/585 (53%), Gaps = 2/585 (0%)

Query: 16  VVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHA 75
           ++  N  L+ Y  SG    ++  F  M + + +  + +   +L        +  GQ VH 
Sbjct: 280 IIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHC 339

Query: 76  MAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQE 135
           MA++LG  L   +S SL++MY K      A  VF  + + D+++W ++I  + Q G   E
Sbjct: 340 MALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVE 399

Query: 136 AAKIFNLMRESSVKPNQFVLTSLVRATTETGD-QRCGESIHAVICKYGFESDTLVGNALV 194
           A  +F  +    +KP+Q+ +TS+++A +   +     + +H    K    SD+ V  AL+
Sbjct: 400 AVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALI 459

Query: 195 SMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMC 254
             Y  N  +     +FE   + D V+WNA+ + +       + L++F  M  +G + +  
Sbjct: 460 DAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDF 518

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
           T   + K C  L  +  GKQ+HA+ IK   D +  V + ++DMY K G +  A  AFDS+
Sbjct: 519 TLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSI 578

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
              D  A+T +I+   + GE E A   F +MRL G+  +EFT+A+     S +  L  GR
Sbjct: 579 PVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGR 638

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
            +H+ A+K     D FV T+LV MYAKCGSIDDA  +FK   + +  +WN M+ G  +HG
Sbjct: 639 QIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHG 698

Query: 435 LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHF 494
            G++ L+ F+ M   G  PD++TF+ VLSACSH GL+ E  KH  S+   YGI P I+H+
Sbjct: 699 EGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHY 758

Query: 495 ACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEP 554
           +C+ D LGRAG   + EN I    +  +A ++  LL AC   G+ E  ++ A KLLELEP
Sbjct: 759 SCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEP 818

Query: 555 KMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
              S YV  S++ A   +W++    R ++    +KK+P  SWIEV
Sbjct: 819 LDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEV 863



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 142/544 (26%), Positives = 258/544 (47%), Gaps = 43/544 (7%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDG-----QKVMHLFCSMKDMEKKFSKFSLSTVL 58
           A+RVF  MP+ ++VSWN++L  YA+S +      Q+   LF  ++      S+ +LS +L
Sbjct: 93  ARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPML 152

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
           K   +SGY+ A +  H  A ++G   D+F++ +LV++Y K G       +F  +   DVV
Sbjct: 153 KLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVV 212

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            W  ++    + G  +EA  + +    S + PN+  L  L R + +  D    +S  A  
Sbjct: 213 LWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSF-ANG 271

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
                 S+ +  N  +S Y+ +G+                  ++AL             L
Sbjct: 272 NDASSVSEIIFRNKGLSEYLHSGQ------------------YSAL-------------L 300

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           + F  M+    + +  TFI++L     +  +  G+Q+H   +K  LD    V  SL++MY
Sbjct: 301 KCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMY 360

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K      A   FD+++ +DL ++ ++I   AQ G    A+  F ++   G+K +++T+ 
Sbjct: 361 CKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMT 420

Query: 359 SCLNGCSPVAT-LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           S L   S +   L+  + +H  A+K  ++ D FVSTAL+  Y++   + +AE +F+    
Sbjct: 421 SVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNF 480

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK- 476
            D  +WN M+ GY +   G K L+ F +M  +G   D+ T   V   C  +  I +GK+ 
Sbjct: 481 -DLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQV 539

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
           H  +IK  Y +   +   + ++D+  + G  +  + F  ++   P+ + W  ++  C  +
Sbjct: 540 HAYAIKSGYDLDLWVS--SGILDMYVKCGDMSAAQ-FAFDSIPVPDDVAWTTMISGCIEN 596

Query: 537 GNIE 540
           G  E
Sbjct: 597 GEEE 600



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/432 (26%), Positives = 194/432 (44%), Gaps = 39/432 (9%)

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
           L+    S  +  G+  HA  +      ++FL  +L+ MYSKCG    A +VF ++ D D+
Sbjct: 46  LRNAITSSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDL 105

Query: 118 VAWGAIITCLDQQGCC-----QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172
           V+W +I+    Q   C     Q+A  +F ++R+  V  ++  L+ +++    +G     E
Sbjct: 106 VSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASE 165

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
           S H   CK G + D  V  ALV++Y++ G+V  G  +FE + ++D V WN +   + +  
Sbjct: 166 SFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMG 225

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
             ++ + +       G  PN  T  ++ +     SD G         +K   +GN     
Sbjct: 226 FKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAG--------QVKSFANGNDASSV 277

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           S +   +K                         ++ Y  +G+    LKCF  M    ++ 
Sbjct: 278 SEIIFRNKG------------------------LSEYLHSGQYSALLKCFADMVESDVEC 313

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
           ++ T    L     V +LA G+ +H +A+K G  L + VS +L+ MY K      A  VF
Sbjct: 314 DQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVF 373

Query: 413 KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM--GL 470
              + RD  SWN +I G  ++GL  +A+  F  +L  G  PD+ T   VL A S +  GL
Sbjct: 374 DNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGL 433

Query: 471 IEEGKKHFSSIK 482
               + H  +IK
Sbjct: 434 SLSKQVHVHAIK 445



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 104/354 (29%), Positives = 172/354 (48%), Gaps = 13/354 (3%)

Query: 14  LNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVV 73
            ++V+WNA++ GY +S DG K + LF  M    ++   F+L+TV K       I  G+ V
Sbjct: 480 FDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQV 539

Query: 74  HAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCC 133
           HA AI+ G  LD ++S  ++DMY KCG    A   F  I  PD VAW  +I+   + G  
Sbjct: 540 HAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEE 599

Query: 134 QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNAL 193
           + A  +F+ MR   V P++F + +L +A++       G  IHA   K    +D  VG +L
Sbjct: 600 ERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSL 659

Query: 194 VSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
           V MY + G +     +F+ I   +  +WNA+      +    + L++F QM   G KP+ 
Sbjct: 660 VDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDK 719

Query: 254 CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG------TSLVDMYDKSGCLEDA 307
            TFI +L ACS     G   + + H    S+ G++ +       + L D   ++G ++ A
Sbjct: 720 VTFIGVLSACSH---SGLVSEAYKHM--RSMHGDYGIKPEIEHYSCLADALGRAGLVKQA 774

Query: 308 GVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRK-MRLEGIKSNEFTLAS 359
               +S++       Y  ++ +    G+ E   +   K + LE + S+ + L S
Sbjct: 775 ENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLS 828



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 97/166 (58%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A+  F S+P  + V+W  +++G  E+G+ ++  H+F  M+ M     +F+++T+ K 
Sbjct: 568 MSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKA 627

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    ++ G+ +HA A++L C  D F+  SLVDMY+KCG  D+A  +F RI+  ++ AW
Sbjct: 628 SSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAW 687

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
            A++  L Q G  +E  ++F  M+   +KP++     ++ A + +G
Sbjct: 688 NAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSG 733


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 186/552 (33%), Positives = 300/552 (54%), Gaps = 2/552 (0%)

Query: 52  FSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYR 111
           F   +VLK      + + G+ +H   ++ G   D F+  +L+ MY +C   + A  VF +
Sbjct: 95  FMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDK 154

Query: 112 IKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG 171
           + + DVV+W  +I  L +      A ++   M    V+P++  + S+V    +T + R G
Sbjct: 155 MMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMG 214

Query: 172 ESIHAVICKYGFESDTLVGN--ALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
           +++HA + +        V    AL+ MY + G +    ++F  +  +  VSW A+ +   
Sbjct: 215 KAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCI 274

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
                ++G ++F +M  +   PN  T + ++  C     +  GKQLHA+ +++    +  
Sbjct: 275 RSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLA 334

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           + T+LVDMY K   + +A   FDS  N+D+  +TA++++YAQA   + A   F +MR  G
Sbjct: 335 LATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSG 394

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           ++  + T+ S L+ C+    L  G+ +HS   K    +D  ++TALV MYAKCG I+ A 
Sbjct: 395 VRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAG 454

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
            +F  +  RD   WN +I G+  HG GE+AL+ F  M  +G  P++ITF+ +L ACSH G
Sbjct: 455 RLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAG 514

Query: 470 LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENL 529
           L+ EGKK F  +   +G+ P I+H+ CM+D+LGRAG   E    I    + PN +VW  L
Sbjct: 515 LVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGAL 574

Query: 530 LGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589
           + AC  H N +L E  A +LLE+EP+     V  S+I A   RW+D +GVR  + + G+K
Sbjct: 575 VAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMK 634

Query: 590 KEPSCSWIEVDG 601
           KEP  S IEV+G
Sbjct: 635 KEPGHSVIEVNG 646



 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 124/450 (27%), Positives = 222/450 (49%), Gaps = 15/450 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ VF  M E +VVSW+ ++   + + +    + L   M  M+ + S+ ++ +++  
Sbjct: 145 VEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNL 204

Query: 61  FANSGYIKAGQVVHAMAIR------LGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
           FA++  ++ G+ +HA  IR      +G       + +L+DMY+KCG    A ++F  +  
Sbjct: 205 FADTANMRMGKAMHAYVIRNSNNEHMGVP----TTTALLDMYAKCGHLGLARQLFNGLTQ 260

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
             VV+W A+I    +    +E  K+F  M+E ++ PN+  + SL+     TG  + G+ +
Sbjct: 261 KTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQL 320

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           HA I + GF     +  ALV MY +   +     +F++  ++D + W A+ S +      
Sbjct: 321 HAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCI 380

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
           DQ   +F QM   G +P   T + +L  C+    +  GK +H++  K  ++ + ++ T+L
Sbjct: 381 DQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTAL 440

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           VDMY K G +  AG  F    ++D+  + AIIT +A  G  E AL  F +M  +G+K N+
Sbjct: 441 VDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPND 500

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA-LVAMYAKCGSIDDAEAVFK 413
            T    L+ CS    +  G+ L    V T  L+        +V +  + G +D+A  + K
Sbjct: 501 ITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIK 560

Query: 414 GSALR-DTASWNMMIGGYVKHG---LGEKA 439
              ++ +T  W  ++     H    LGE A
Sbjct: 561 SMPIKPNTIVWGALVAACRLHKNPQLGELA 590


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 195/547 (35%), Positives = 293/547 (53%), Gaps = 17/547 (3%)

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
           G+ +H  AI  G   D F+S +L+DMY KC    +A  +F  +   D+VAW A++     
Sbjct: 29  GRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAH 88

Query: 130 QGCCQEA-AKIFNL-MRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD- 186
            G    A A + ++ M+   ++PN   L +L+    + G    G S+HA   +     + 
Sbjct: 89  HGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNR 148

Query: 187 ---------TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
                     L+G AL+ MY + G + Y  RVF+A+  ++ V+W+AL   F       Q 
Sbjct: 149 NSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQA 208

Query: 238 LRIFYQMLLKGF---KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
             +F  ML +G     P   +    L+AC+SL  +  G+QLHA   K  +  +   G SL
Sbjct: 209 FLLFKAMLAQGLCFLSPT--SIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSL 266

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           + MY K+G ++ A   FD +A KD  +Y+A+++ Y Q G AE A   F+KM+   ++ + 
Sbjct: 267 LSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDA 326

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            T+ S +  CS +A L +GR  H   +  G   +  +  AL+ MYAKCG ID +  VF  
Sbjct: 327 ATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNM 386

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
              RD  SWN MI GY  HGLG++A   F  M + G+ PD +TF+ +LSACSH GL+ EG
Sbjct: 387 MPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEG 446

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
           K  F  +   YG+TP ++H+ CM+D+L R G   E   FI    L  +  VW  LLGAC 
Sbjct: 447 KHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACR 506

Query: 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSC 594
            + NI+L +K +  + EL P+   N+V  S+I +  GR+++ + VR +   QG KK P C
Sbjct: 507 VYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGC 566

Query: 595 SWIEVDG 601
           SWIE++G
Sbjct: 567 SWIEING 573



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 205/436 (47%), Gaps = 23/436 (5%)

Query: 143 MRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGR 202
           M    V PN +     ++A +   D  CG +IH      G ++D  V  AL+ MY++   
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 203 VSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR--IFYQMLLKGFKPNMCTFIVIL 260
           +   + +F  +  +D V+WNA+ + +  +      +   +  QM +   +PN  T + +L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 261 KACSSLSDVGFGKQLHAHTIKHSLDGNH----------VVGTSLVDMYDKSGCLEDAGVA 310
              +    +  G  +HA+ I+  L  N           ++GT+L+DMY K G L  A   
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 311 FDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI-KSNEFTLASCLNGCSPVAT 369
           FD++  ++   ++A+I  +        A   F+ M  +G+   +  ++AS L  C+ +  
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDH 240

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           L  G  LH++  K+G   D+    +L++MYAK G ID A A+F   A++DT S++ ++ G
Sbjct: 241 LRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSG 300

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITP 489
           YV++G  E+A   F+ M      PD  T V ++ ACSH+  ++ G+    S+  I G+  
Sbjct: 301 YVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSV-IIRGLAS 359

Query: 490 TIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKL 549
                  +ID+  + G+  ++   +     + + + W  ++     HG   L ++     
Sbjct: 360 ETSICNALIDMYAKCGRI-DLSRQVFNMMPSRDIVSWNTMIAGYGIHG---LGKEATALF 415

Query: 550 LELEPKMESNYVFPSD 565
           LE+     +N  FP D
Sbjct: 416 LEM-----NNLGFPPD 426



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 122/468 (26%), Positives = 210/468 (44%), Gaps = 24/468 (5%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESG-DGQKVMHLFCSMKDMEK-KFSKFSLSTVLKGF 61
           A  +F +MP  ++V+WNA+L GYA  G     V HL      M + + +  +L  +L   
Sbjct: 64  AAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLL 123

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDK----------FLSCSLVDMYSKCGLADNALKVFYR 111
           A  G +  G  VHA  IR     ++           L  +L+DMY+KCG    A +VF  
Sbjct: 124 AQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDA 183

Query: 112 IKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFV----LTSLVRATTETGD 167
           +   + V W A+I        C    + F L +    +   F+    + S +RA      
Sbjct: 184 MPARNEVTWSALIGGFV---LCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDH 240

Query: 168 QRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR 227
            R GE +HA++ K G  +D   GN+L+SMY + G +     +F+ +A +D+VS++AL S 
Sbjct: 241 LRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSG 300

Query: 228 FQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGN 287
           +      ++   +F +M     +P+  T + ++ ACS L+ +  G+  H   I   L   
Sbjct: 301 YVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASE 360

Query: 288 HVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL 347
             +  +L+DMY K G ++ +   F+ + ++D+ ++  +I  Y   G  + A   F +M  
Sbjct: 361 TSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNN 420

Query: 348 EGIKSNEFTLASCLNGCSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSID 406
            G   +  T    L+ CS    +  G+   H +    G    M     +V + ++ G +D
Sbjct: 421 LGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLD 480

Query: 407 DAEAVFKGSALR-DTASWNMMIGG---YVKHGLGEKALEAFRMMLDEG 450
           +A    +   LR D   W  ++G    Y    LG+K     + +  EG
Sbjct: 481 EAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEG 528



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 109/242 (45%), Gaps = 2/242 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  +F  M   + VS++AL++GY ++G  ++   +F  M+    +    ++ +++  
Sbjct: 276 IDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPA 335

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ++   ++ G+  H   I  G A +  +  +L+DMY+KCG  D + +VF  +   D+V+W
Sbjct: 336 CSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSW 395

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES-IHAVIC 179
             +I      G  +EA  +F  M      P+      L+ A + +G    G+   H +  
Sbjct: 396 NTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGH 455

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS-WNALFSRFQDYESPDQGL 238
            YG          +V +    G +       +++  +  V  W AL    + Y++ D G 
Sbjct: 456 GYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGK 515

Query: 239 RI 240
           ++
Sbjct: 516 KV 517


>gi|357166812|ref|XP_003580863.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Brachypodium distachyon]
          Length = 707

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 187/555 (33%), Positives = 302/555 (54%), Gaps = 9/555 (1%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
           ++ +L+  A S  I  G  +H   ++LG   D  L  +L+DMY+KCG    A +VF  + 
Sbjct: 7   IADMLRASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFGGMP 66

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRE-SSVKPNQFVLTSLVRATTETGDQRCGE 172
           + +VV+W A++    + G  +E  ++   MR  S V PN+F L++ ++A    GD   G 
Sbjct: 67  ERNVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAAGV 126

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
            IH    + GFE   +V N+LV +Y + GR+    RVF+    ++ V+WNA+ S +    
Sbjct: 127 WIHGACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHAG 186

Query: 233 SPDQGLRIFYQMLLK-----GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKH--SLD 285
                L +F +M  +       +P+  TF  +LKAC SL     G Q+HA  +    S  
Sbjct: 187 HGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVSTA 246

Query: 286 GNHVVGTSLVDMYDKSGCLEDAGV-AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRK 344
            N ++  +L+DMY K  CL    +  F+ L  K+   +T +I  +AQ G+ + A++ F +
Sbjct: 247 SNAILAGALLDMYVKCRCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAMELFGR 306

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404
               G++++   L+S +   +  A +  GR +H   VKT   LD+ V+ +L+ MY KCG 
Sbjct: 307 FWSSGVRADGHVLSSVVGVFADFALVEQGRQVHCYTVKTPAGLDVSVANSLIDMYHKCGL 366

Query: 405 IDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
            D+A   F+    R+  SW  MI G  KHG G++A+  F  M  EG  PDE+ ++ +LSA
Sbjct: 367 TDEAARRFREVPARNVVSWTAMINGLGKHGHGQEAIHMFEEMRAEGVEPDEVAYLALLSA 426

Query: 465 CSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNAL 524
           CSH GL+EE +++FS+I+    + P  +H+ACM+D+LGRAG+ +E ++ +    + P   
Sbjct: 427 CSHSGLVEECRRYFSAIRHDRRLRPRAEHYACMVDLLGRAGELSEAKDLVATMPMAPTVG 486

Query: 525 VWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLS 584
           VW+ LL AC  H N+ +  +  E LL ++     NYV  S+I A  G W +   VR  + 
Sbjct: 487 VWQTLLSACRVHKNVTVGREAGETLLAIDGDNPVNYVMLSNIFAEAGDWRECQRVRGAMR 546

Query: 585 SQGIKKEPSCSWIEV 599
            +G++K+  CSW+EV
Sbjct: 547 RRGLRKQGGCSWVEV 561



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 112/424 (26%), Positives = 194/424 (45%), Gaps = 20/424 (4%)

Query: 154 VLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAI 213
           ++  ++RA+  +     G  +H  + K GF SDT++GN L+ MY + G +     VF  +
Sbjct: 6   MIADMLRASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFGGM 65

Query: 214 AHQDSVSWNALFSRFQDYESPDQGLRIFYQML-LKGFKPNMCTFIVILKACSSLSDVGFG 272
             ++ VSW AL   F  +    + LR+   M  L    PN  T    LKAC  + D+  G
Sbjct: 66  PERNVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAAG 125

Query: 273 KQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQA 332
             +H   ++   +G+HVV  SLV +Y K G + DA   FD    ++L  + A+I+ YA A
Sbjct: 126 VWIHGACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHA 185

Query: 333 GEAEMALKCFRKMRL-----EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG--H 385
           G    +L  FR+M+      E  + +EFT AS L  C  +     G  +H+  V  G   
Sbjct: 186 GHGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVST 245

Query: 386 LLDMFVSTALVAMYAKCGS-IDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
             +  ++ AL+ MY KC   +  A  VF     ++   W  +I G+ + G  ++A+E F 
Sbjct: 246 ASNAILAGALLDMYVKCRCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAMELFG 305

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGR 503
                G   D      V+   +   L+E+G++ H  ++K   G+  ++ +   +ID+  +
Sbjct: 306 RFWSSGVRADGHVLSSVVGVFADFALVEQGRQVHCYTVKTPAGLDVSVAN--SLIDMYHK 363

Query: 504 AGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFP 563
            G   E      E     N + W  ++     HG+        ++ + +  +M +  V P
Sbjct: 364 CGLTDEAARRFREVP-ARNVVSWTAMINGLGKHGH-------GQEAIHMFEEMRAEGVEP 415

Query: 564 SDIS 567
            +++
Sbjct: 416 DEVA 419



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 184/374 (49%), Gaps = 9/374 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDM-EKKFSKFSLSTVLK 59
           + +A  VF  MPE NVVSW AL+ G+   GD ++ + L  +M+ + +   ++F+LS  LK
Sbjct: 55  LRMAGEVFGGMPERNVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLK 114

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
                G + AG  +H   +R G      ++ SLV +YSK G   +A +VF      ++V 
Sbjct: 115 ACGVVGDMAAGVWIHGACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVT 174

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMR-----ESSVKPNQFVLTSLVRATTETGDQRCGESI 174
           W A+I+     G  +++  +F  M+     E   +P++F   SL++A    G  R G  +
Sbjct: 175 WNAMISGYAHAGHGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQV 234

Query: 175 HAVICKYGFE--SDTLVGNALVSMYME-NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY 231
           HA +   G    S+ ++  AL+ MY++    +    +VF  +  ++++ W  +       
Sbjct: 235 HAAMVIRGVSTASNAILAGALLDMYVKCRCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQE 294

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
               + + +F +    G + +      ++   +  + V  G+Q+H +T+K     +  V 
Sbjct: 295 GQVKEAMELFGRFWSSGVRADGHVLSSVVGVFADFALVEQGRQVHCYTVKTPAGLDVSVA 354

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
            SL+DMY K G  ++A   F  +  +++ ++TA+I    + G  + A+  F +MR EG++
Sbjct: 355 NSLIDMYHKCGLTDEAARRFREVPARNVVSWTAMINGLGKHGHGQEAIHMFEEMRAEGVE 414

Query: 352 SNEFTLASCLNGCS 365
            +E    + L+ CS
Sbjct: 415 PDEVAYLALLSACS 428



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 38/65 (58%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A R F+ +P  NVVSW A++NG  + G GQ+ +H+F  M+    +  + +   +L   ++
Sbjct: 370 AARRFREVPARNVVSWTAMINGLGKHGHGQEAIHMFEEMRAEGVEPDEVAYLALLSACSH 429

Query: 64  SGYIK 68
           SG ++
Sbjct: 430 SGLVE 434


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 183/524 (34%), Positives = 306/524 (58%), Gaps = 26/524 (4%)

Query: 91  SLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKP 150
           +L+  Y+K    + A ++F  +  PD V++  +I    ++G  Q A ++F  MRE+ +  
Sbjct: 79  TLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDM 138

Query: 151 NQFVLTSLVRATTETGDQRCG------ESIHAVICKYGFESDTLVGNALVSMYMENGRVS 204
           + F L+ ++ A        CG        +HA+    G +S   VGNAL++ Y +NG + 
Sbjct: 139 DGFTLSGIITA--------CGINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLK 190

Query: 205 YGSRVFEAIAH-QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKAC 263
              R+F  ++  +D VSWN++   +  +    + L ++ +M ++G   ++ T   +L A 
Sbjct: 191 EARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAF 250

Query: 264 SSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK-SGCLEDAGVAFDSLANKDLFAY 322
           +++ D+  G Q HA  IK     N  VG+ L+D+Y K  GC+ D    FD ++N DL  +
Sbjct: 251 TNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLW 310

Query: 323 TAIITSYAQAGE-AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAV 381
             +I+ Y+   + ++ AL+CFR++++ G + ++ +L   ++ CS +++ + GR +H +A+
Sbjct: 311 NTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLAL 370

Query: 382 KTGHLLDM-----FVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
           K    LD+      V+ AL+AMY+KCG++ DA+ +F      +T S+N MI GY +HG+G
Sbjct: 371 K----LDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMG 426

Query: 437 EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFAC 496
            ++L  F+ ML+ G+ P  ITF+ VL+AC+H G +E+GK +F+ +K+ +GI P   HF+C
Sbjct: 427 FQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSC 486

Query: 497 MIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKM 556
           MID+LGRAGK +E E  I      P    W  LLGAC  HGN+EL  K A +LL+L+P  
Sbjct: 487 MIDLLGRAGKLSEAERLIETIPFDPGFFFWSALLGACRIHGNVELAIKAANRLLQLDPLN 546

Query: 557 ESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
            + YV  ++I +  GR  D + VR L+  +G+KK+P CSWIEV+
Sbjct: 547 AAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVN 590



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 129/465 (27%), Positives = 229/465 (49%), Gaps = 32/465 (6%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E+A ++F  MP+ + VS+N L+  YA  GD Q    LF  M++       F+LS ++  
Sbjct: 90  VEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITA 149

Query: 61  FA-NSGYIKAGQVVHAMAIRLGCALDKFLSC--SLVDMYSKCGLADNALKVFYRI-KDPD 116
              N G I+    +HA+++  G  LD ++S   +L+  YSK G    A ++F+ + +D D
Sbjct: 150 CGINVGLIRQ---LHALSVVTG--LDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRD 204

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK---PNQFVLTSLVRATTETGDQRCGES 173
            V+W +++    Q    +E +K   L  E +V+    + F L S++ A T   D   G  
Sbjct: 205 EVSWNSMVVAYMQH---REGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQ 261

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSR-VFEAIAHQDSVSWNALFSRFQDYE 232
            HA + K G+  ++ VG+ L+ +Y + G      R VF+ I++ D V WN + S +  YE
Sbjct: 262 FHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYE 321

Query: 233 S-PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-V 290
              D+ L  F Q+ + G +P+ C+ + ++ ACS++S    G+Q+H   +K  +  N + V
Sbjct: 322 DLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISV 381

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
             +L+ MY K G L DA   FD++   +  +Y ++I  YAQ G    +L  F++M   G 
Sbjct: 382 NNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMGF 441

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHS-------IAVKTGHLLDMFVSTALVAMYAKCG 403
                T  S L  C+    + +G++  +       I  + GH       + ++ +  + G
Sbjct: 442 TPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHF------SCMIDLLGRAG 495

Query: 404 SIDDAEAVFKGSALRDT-ASWNMMIGGYVKHGLGEKALEAFRMML 447
            + +AE + +          W+ ++G    HG  E A++A   +L
Sbjct: 496 KLSEAERLIETIPFDPGFFFWSALLGACRIHGNVELAIKAANRLL 540



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 109/405 (26%), Positives = 190/405 (46%), Gaps = 37/405 (9%)

Query: 167 DQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFE--------------- 211
           D R G+S+HA+  K    + T + N  + +Y +  R+S   RVF+               
Sbjct: 23  DLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNVFSFNTLIS 82

Query: 212 --------AIAHQ--------DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCT 255
                    +AHQ        DSVS+N L + +          ++F +M       +  T
Sbjct: 83  AYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFT 142

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
              I+ AC    +VG  +QLHA ++   LD    VG +L+  Y K+G L++A   F  L+
Sbjct: 143 LSGIITACG--INVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLS 200

Query: 316 -NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
            ++D  ++ +++ +Y Q  E   AL+ + +M + G+  + FTLAS L   + V  L  G 
Sbjct: 201 EDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGL 260

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGS-IDDAEAVFKGSALRDTASWNMMIGGY-VK 432
             H+  +K+G+  +  V + L+ +Y+KCG  + D   VF   +  D   WN MI GY + 
Sbjct: 261 QFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLY 320

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK 492
             L ++ALE FR +   G+ PD+ + V V+SACS+M    +G++      K+   +  I 
Sbjct: 321 EDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRIS 380

Query: 493 HFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
               +I +  + G   + +    +T    N + + +++   + HG
Sbjct: 381 VNNALIAMYSKCGNLRDAKTLF-DTMPEHNTVSYNSMIAGYAQHG 424



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 144/334 (43%), Gaps = 57/334 (17%)

Query: 249 FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK--------------------------- 281
           F   +  F   LK C +  D+  GK LHA  IK                           
Sbjct: 4   FSSLLHNFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAAR 63

Query: 282 ----HSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEM 337
               H+ D N     +L+  Y K   +E A   FD +   D  +Y  +I +YA+ G+ + 
Sbjct: 64  RVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQP 123

Query: 338 ALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS--TAL 395
           A + F +MR   +  + FTL+  +  C     L   R LH+++V TG  LD +VS   AL
Sbjct: 124 AFQLFLEMREAFLDMDGFTLSGIITACGINVGLI--RQLHALSVVTG--LDSYVSVGNAL 179

Query: 396 VAMYAKCGSIDDAEAVFKG-SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD 454
           +  Y+K G + +A  +F   S  RD  SWN M+  Y++H  G KALE +  M   G + D
Sbjct: 180 ITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVD 239

Query: 455 EITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGK------- 506
             T   VL+A +++  +  G + H   IK  Y     +   + +ID+  + G        
Sbjct: 240 IFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVG--SGLIDLYSKCGGCMLDCRK 297

Query: 507 -FTEIENFITETKLTPNALVWENLLGACSWHGNI 539
            F EI N        P+ ++W  ++   S + ++
Sbjct: 298 VFDEISN--------PDLVLWNTMISGYSLYEDL 323


>gi|414586383|tpg|DAA36954.1| TPA: hypothetical protein ZEAMMB73_991125 [Zea mays]
          Length = 1021

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 199/599 (33%), Positives = 318/599 (53%), Gaps = 3/599 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AK+VF    E N+V WNA+L G+ ++   ++ + +F  M+  + +   F+  +VL    N
Sbjct: 378 AKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLEADDFTFVSVLGACIN 437

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G+ VH + I+ G   D F++ +++DMYSK G  D A  +F  I   D V+W A+
Sbjct: 438 LYSLDLGRQVHCITIKNGMDADLFVANAMLDMYSKLGAIDVAKALFSLIPVKDSVSWNAL 497

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I  L       EA  +   M+   +  ++    + + A +       G+ IH+   KY  
Sbjct: 498 IVGLAHNEEEGEAINMLKRMKFYGIALDEVSFATAINACSNIWAIETGKQIHSASIKYNV 557

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            S+  VG++L+ +Y + G V    +V   +     V  NAL +        D+ + +F Q
Sbjct: 558 CSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSIVPINALITGLVQNNREDEAIELFQQ 617

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS-LDGNHVVGTSLVDMYDKSG 302
           +L  GFKP+  TF  IL  C+       GKQ+H +T+K + L+ +  +G SLV +Y K  
Sbjct: 618 VLKDGFKPSNFTFTSILSGCTRPVSSVIGKQVHCYTLKSAILNQDTSLGISLVGIYLKCK 677

Query: 303 CLEDAGVAFDSLAN-KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
            LEDA    + + + K+L  +TA I+ YAQ G +  +L  F +MR   ++S+E T  S L
Sbjct: 678 LLEDANKLLEEVPDHKNLVEWTATISGYAQNGYSVQSLVMFWRMRSYDVRSDEATFTSVL 737

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DT 420
             CS +A L +G+ +H + VK+G +     ++AL+ MY+KCG +  +  +FK    R + 
Sbjct: 738 KACSEMAALTDGKEIHGLIVKSGFVSYETATSALMDMYSKCGDVISSFEIFKELKNRQNI 797

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
             WN MI G+ K+G   +AL  F+ M +    PD++T + VL ACSH GLI EG   F S
Sbjct: 798 MPWNSMIVGFAKNGYANEALLLFQKMQESQIKPDDVTLLGVLIACSHAGLISEGLHFFDS 857

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + ++YGI P + H+AC+ID+LGR G   + +  I +     + ++W   L AC  H + E
Sbjct: 858 MSQVYGIVPRVDHYACLIDLLGRGGHLQKAQEVIDQLPFRADGVIWATYLAACQMHKDEE 917

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
             +  A+KL+E+EP+  S YVF S + A  G W +    R  +  +G+ K P CSWI V
Sbjct: 918 RGKVAAKKLVEMEPQSSSTYVFLSSLHAAAGNWVEAKVAREAMREKGVMKFPGCSWITV 976



 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 151/566 (26%), Positives = 273/566 (48%), Gaps = 10/566 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ + K +   + V+WNA++  Y++SG   +V  L+  MK      ++ + +++L   AN
Sbjct: 277 ARTLLKRIRMTSTVAWNAVIASYSQSGLDSEVFGLYKDMKKQGLMPTRSTFASILSAAAN 336

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G+ +HA A++ G   + F+  SL+++Y K G   +A KVF    + ++V W AI
Sbjct: 337 MTAFDEGRQIHATAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAI 396

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    Q    +E  ++F  MR + ++ + F   S++ A         G  +H +  K G 
Sbjct: 397 LYGFVQNELQEETIQMFQYMRRADLEADDFTFVSVLGACINLYSLDLGRQVHCITIKNGM 456

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           ++D  V NA++ MY + G +     +F  I  +DSVSWNAL       E   + + +  +
Sbjct: 457 DADLFVANAMLDMYSKLGAIDVAKALFSLIPVKDSVSWNALIVGLAHNEEEGEAINMLKR 516

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G   +  +F   + ACS++  +  GKQ+H+ +IK+++  NH VG+SL+D+Y K G 
Sbjct: 517 MKFYGIALDEVSFATAINACSNIWAIETGKQIHSASIKYNVCSNHAVGSSLIDLYSKFGD 576

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +E +      +    +    A+IT   Q    + A++ F+++  +G K + FT  S L+G
Sbjct: 577 VESSRKVLAHVDASSIVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFTSILSG 636

Query: 364 CSPVATLANGRLLHSIAVKTGHL-LDMFVSTALVAMYAKCGSIDDAEAVFKGSA-LRDTA 421
           C+   +   G+ +H   +K+  L  D  +  +LV +Y KC  ++DA  + +     ++  
Sbjct: 637 CTRPVSSVIGKQVHCYTLKSAILNQDTSLGISLVGIYLKCKLLEDANKLLEEVPDHKNLV 696

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
            W   I GY ++G   ++L  F  M       DE TF  VL ACS M  + +GK+    I
Sbjct: 697 EWTATISGYAQNGYSVQSLVMFWRMRSYDVRSDEATFTSVLKACSEMAALTDGKEIHGLI 756

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
            K  G        + ++D+  + G          E K   N + W +++   + +G    
Sbjct: 757 VK-SGFVSYETATSALMDMYSKCGDVISSFEIFKELKNRQNIMPWNSMIVGFAKNGY--- 812

Query: 542 DEKDAEKLLELEPKMESNYVFPSDIS 567
               A + L L  KM+ + + P D++
Sbjct: 813 ----ANEALLLFQKMQESQIKPDDVT 834



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 139/493 (28%), Positives = 245/493 (49%), Gaps = 42/493 (8%)

Query: 22  LLNGYAESGDGQKVMHLFCSMK-DMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRL 80
           +L+ +A SG  + V+  F  ++  +     +F ++ VL   +  G ++ G+ VH   ++ 
Sbjct: 127 VLSCHARSGSPRDVLDAFQRIRCSIGSTPDQFGIAVVLSACSRLGALEHGRQVHCDVLKS 186

Query: 81  GCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIF 140
           G     F    LVDMY+KCG  D+A ++F  I  PD + W ++I    + G  Q+A  +F
Sbjct: 187 GFCSSVFCQAGLVDMYAKCGEVDDARRMFDGIACPDTICWTSMIAGYHRVGRYQQALALF 246

Query: 141 NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMEN 200
           + M +    P+Q    +++                               + L SM    
Sbjct: 247 SRMEKMGSVPDQVTCVTII-------------------------------STLASM---- 271

Query: 201 GRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVIL 260
           GR+     + + I    +V+WNA+ + +       +   ++  M  +G  P   TF  IL
Sbjct: 272 GRLGDARTLLKRIRMTSTVAWNAVIASYSQSGLDSEVFGLYKDMKKQGLMPTRSTFASIL 331

Query: 261 KACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLF 320
            A ++++    G+Q+HA  +KH LD N  VG+SL+++Y K GC+ DA   FD    K++ 
Sbjct: 332 SAAANMTAFDEGRQIHATAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIV 391

Query: 321 AYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIA 380
            + AI+  + Q    E  ++ F+ MR   +++++FT  S L  C  + +L  GR +H I 
Sbjct: 392 MWNAILYGFVQNELQEETIQMFQYMRRADLEADDFTFVSVLGACINLYSLDLGRQVHCIT 451

Query: 381 VKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKAL 440
           +K G   D+FV+ A++ MY+K G+ID A+A+F    ++D+ SWN +I G   +    +A+
Sbjct: 452 IKNGMDADLFVANAMLDMYSKLGAIDVAKALFSLIPVKDSVSWNALIVGLAHNEEEGEAI 511

Query: 441 EAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMID 499
              + M   G   DE++F   ++ACS++  IE GK+ H +SIK  Y +       + +ID
Sbjct: 512 NMLKRMKFYGIALDEVSFATAINACSNIWAIETGKQIHSASIK--YNVCSNHAVGSSLID 569

Query: 500 ILGRAGKFTEIEN 512
           +     KF ++E+
Sbjct: 570 LY---SKFGDVES 579



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 116/463 (25%), Positives = 222/463 (47%), Gaps = 35/463 (7%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R+F  +   + + W +++ GY   G  Q+ + LF  M+ M     + +  T++   A+
Sbjct: 211 ARRMFDGIACPDTICWTSMIAGYHRVGRYQQALALFSRMEKMGSVPDQVTCVTIISTLAS 270

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G             RLG                      +A  +  RI+    VAW A+
Sbjct: 271 MG-------------RLG----------------------DARTLLKRIRMTSTVAWNAV 295

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q G   E   ++  M++  + P +    S++ A         G  IHA   K+G 
Sbjct: 296 IASYSQSGLDSEVFGLYKDMKKQGLMPTRSTFASILSAAANMTAFDEGRQIHATAVKHGL 355

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           +++  VG++L+++Y+++G +S   +VF+    ++ V WNA+   F   E  ++ +++F  
Sbjct: 356 DANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQMFQY 415

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M     + +  TF+ +L AC +L  +  G+Q+H  TIK+ +D +  V  +++DMY K G 
Sbjct: 416 MRRADLEADDFTFVSVLGACINLYSLDLGRQVHCITIKNGMDADLFVANAMLDMYSKLGA 475

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++ A   F  +  KD  ++ A+I   A   E   A+   ++M+  GI  +E + A+ +N 
Sbjct: 476 IDVAKALFSLIPVKDSVSWNALIVGLAHNEEEGEAINMLKRMKFYGIALDEVSFATAINA 535

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           CS +  +  G+ +HS ++K     +  V ++L+ +Y+K G ++ +  V            
Sbjct: 536 CSNIWAIETGKQIHSASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSIVPI 595

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
           N +I G V++   ++A+E F+ +L +G+ P   TF  +LS C+
Sbjct: 596 NALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFTSILSGCT 638



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/453 (24%), Positives = 214/453 (47%), Gaps = 5/453 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +++AK +F  +P  + VSWNAL+ G A + +  + +++   MK       + S +T +  
Sbjct: 476 IDVAKALFSLIPVKDSVSWNALIVGLAHNEEEGEAINMLKRMKFYGIALDEVSFATAINA 535

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +N   I+ G+ +H+ +I+     +  +  SL+D+YSK G  +++ KV   +    +V  
Sbjct: 536 CSNIWAIETGKQIHSASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSIVPI 595

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+IT L Q     EA ++F  + +   KP+ F  TS++   T       G+ +H    K
Sbjct: 596 NALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFTSILSGCTRPVSSVIGKQVHCYTLK 655

Query: 181 YG-FESDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALFSRFQDYESPDQGL 238
                 DT +G +LV +Y++   +   +++ E +  H++ V W A  S +       Q L
Sbjct: 656 SAILNQDTSLGISLVGIYLKCKLLEDANKLLEEVPDHKNLVEWTATISGYAQNGYSVQSL 715

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            +F++M     + +  TF  +LKACS ++ +  GK++H   +K          ++L+DMY
Sbjct: 716 VMFWRMRSYDVRSDEATFTSVLKACSEMAALTDGKEIHGLIVKSGFVSYETATSALMDMY 775

Query: 299 DKSGCLEDAGVAFDSLANK-DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
            K G +  +   F  L N+ ++  + ++I  +A+ G A  AL  F+KM+   IK ++ TL
Sbjct: 776 SKCGDVISSFEIFKELKNRQNIMPWNSMIVGFAKNGYANEALLLFQKMQESQIKPDDVTL 835

Query: 358 ASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
              L  CS    ++ G     S++   G +  +     L+ +  + G +  A+ V     
Sbjct: 836 LGVLIACSHAGLISEGLHFFDSMSQVYGIVPRVDHYACLIDLLGRGGHLQKAQEVIDQLP 895

Query: 417 LR-DTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
            R D   W   +     H   E+   A + +++
Sbjct: 896 FRADGVIWATYLAACQMHKDEERGKVAAKKLVE 928



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 113/450 (25%), Positives = 199/450 (44%), Gaps = 41/450 (9%)

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD--V 117
           G   +   +A  V+HA  +RLG  L   L  +LVD+Y + G    A +            
Sbjct: 62  GLHRTHQARACGVLHARILRLGLPLRGRLGDALVDLYGRSGRVGYAWRALACCTGAPASS 121

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRES-SVKPNQFVLTSLVRATTETGDQRCGESIHA 176
            A  ++++C  + G  ++    F  +R S    P+QF +  ++ A +  G    G  +H 
Sbjct: 122 AAASSVLSCHARSGSPRDVLDAFQRIRCSIGSTPDQFGIAVVLSACSRLGALEHGRQVHC 181

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
            + K GF S       LV MY + G V    R+F+ IA  D++ W ++ + +       Q
Sbjct: 182 DVLKSGFCSSVFCQAGLVDMYAKCGEVDDARRMFDGIACPDTICWTSMIAGYHRVGRYQQ 241

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            L +F +M   G  P+  T + I+   +S+  +G                          
Sbjct: 242 ALALFSRMEKMGSVPDQVTCVTIISTLASMGRLG-------------------------- 275

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
                    DA      +      A+ A+I SY+Q+G        ++ M+ +G+     T
Sbjct: 276 ---------DARTLLKRIRMTSTVAWNAVIASYSQSGLDSEVFGLYKDMKKQGLMPTRST 326

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
            AS L+  + +     GR +H+ AVK G   ++FV ++L+ +Y K G I DA+ VF  S 
Sbjct: 327 FASILSAAANMTAFDEGRQIHATAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFST 386

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            ++   WN ++ G+V++ L E+ ++ F+ M       D+ TFV VL AC ++  ++ G++
Sbjct: 387 EKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLEADDFTFVSVLGACINLYSLDLGRQ 446

Query: 477 -HFSSIKKIYGITPTIKHFACMIDILGRAG 505
            H  +IK   G+   +     M+D+  + G
Sbjct: 447 VHCITIKN--GMDADLFVANAMLDMYSKLG 474



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 160/368 (43%), Gaps = 49/368 (13%)

Query: 170 CGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAI--AHQDSVSWNALFSR 227
           CG  +HA I + G      +G+ALV +Y  +GRV Y  R       A   S + +++ S 
Sbjct: 72  CG-VLHARILRLGLPLRGRLGDALVDLYGRSGRVGYAWRALACCTGAPASSAAASSVLSC 130

Query: 228 FQDYESPDQGLRIFYQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDG 286
                SP   L  F ++    G  P+     V+L ACS L  +  G+Q+H   +K     
Sbjct: 131 HARSGSPRDVLDAFQRIRCSIGSTPDQFGIAVVLSACSRLGALEHGRQVHCDVLKSGFCS 190

Query: 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR 346
           +      LVDMY K G ++DA   FD +A  D   +T++I  Y + G  + AL  F +M 
Sbjct: 191 SVFCQAGLVDMYAKCGEVDDARRMFDGIACPDTICWTSMIAGYHRVGRYQQALALFSRME 250

Query: 347 LEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSID 406
                                              K G + D      +++  A  G + 
Sbjct: 251 -----------------------------------KMGSVPDQVTCVTIISTLASMGRLG 275

Query: 407 DAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
           DA  + K   +  T +WN +I  Y + GL  +    ++ M  +G +P   TF  +LSA +
Sbjct: 276 DARTLLKRIRMTSTVAWNAVIASYSQSGLDSEVFGLYKDMKKQGLMPTRSTFASILSAAA 335

Query: 467 HMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTE---IENFITETKLTPN 522
           +M   +EG++ H +++K  +G+   +   + +I++  + G  ++   + +F TE     N
Sbjct: 336 NMTAFDEGRQIHATAVK--HGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEK----N 389

Query: 523 ALVWENLL 530
            ++W  +L
Sbjct: 390 IVMWNAIL 397


>gi|302756099|ref|XP_002961473.1| hypothetical protein SELMODRAFT_77426 [Selaginella moellendorffii]
 gi|300170132|gb|EFJ36733.1| hypothetical protein SELMODRAFT_77426 [Selaginella moellendorffii]
          Length = 643

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 193/573 (33%), Positives = 310/573 (54%), Gaps = 6/573 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF  +   N+ SW  +L  YA++G G++ + LF  ++         +L + LK  A 
Sbjct: 66  AREVFDRIQRRNIFSWTIMLGAYADNGHGREALGLFREIQSRGMAIDNVTLVSALKACAV 125

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +G ++ G+ +HA A  LG   +  ++ +LV MY KCG  + A  VF  + + + V+W A+
Sbjct: 126 AGDLEEGRGIHASARSLGYESEIIVATALVSMYGKCGHLEEAKAVFATLVERNRVSWNAM 185

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    Q G C+EA +++ LM    +KP+     S++      G+   G  IH  + + GF
Sbjct: 186 LAAYAQNGHCEEAVRLYRLMCFEGIKPDATTFVSVLDGWKGEGEH--GTRIHDQVLESGF 243

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            S+T + NALVSMY   GRV     VF+ IA +  VSWNA+ + +       + + +F++
Sbjct: 244 GSNTTLANALVSMYGSGGRVDDARYVFDGIAEKTVVSWNAMLTAYAQNGRYGKAVDLFWK 303

Query: 244 M--LLKGF-KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           M  + +   +PN  TF+ +L AC++   +  G+++HA      L     VG +L++MY +
Sbjct: 304 MDEMRRALVEPNSVTFVNLLVACAATGFLEAGRKIHAEVASLGLLSTLSVGGALINMYSE 363

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L  A   FDS+ +K+L ++  +I SYA  G+ + AL   +KM LEG+K ++FT  S 
Sbjct: 364 CGNLVLAKSVFDSVPHKNLVSWNVLIGSYAGDGDGKEALGVHQKMELEGLKPDKFTFISV 423

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF-KGSALRD 419
           L+ CS    LA G+ +H++   +G   D  + TAL+ +Y KCGS++ A  VF    + R+
Sbjct: 424 LHACSASEALAEGKAIHALIAASGLERDEAIGTALINLYGKCGSLEQARNVFLDMKSRRN 483

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             +WN M+      G  E  +E   MM  EG +PDE+TF+ VL ACSH G I++G   F 
Sbjct: 484 LVTWNSMLAAACTKGGLEDCVEIIHMMGLEGIMPDELTFLSVLFACSHGGSIQQGLDLFL 543

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           S    YGI    KH+ C++DILGR G+  E +  +       N + W  LLGAC  H + 
Sbjct: 544 SAGVDYGIATNTKHYVCVVDILGRVGRLEEAQEVLNRMPFQANDVAWMTLLGACRIHRDF 603

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGR 572
           E   + A+ ++EL+P+  + Y   S + +  GR
Sbjct: 604 EQGRRAADYVIELDPQNAAPYALLSTMFSVAGR 636



 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 147/515 (28%), Positives = 250/515 (48%), Gaps = 7/515 (1%)

Query: 53  SLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI 112
           S +++L+  A++  + A +       R G   D++L   LV  Y KCG   +A +VF RI
Sbjct: 14  SHASILRDCASARDLTAAKQAQWEIARDGFGGDRYLGNLLVQAYGKCGSVRDAREVFDRI 73

Query: 113 KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172
           +  ++ +W  ++      G  +EA  +F  ++   +  +   L S ++A    GD   G 
Sbjct: 74  QRRNIFSWTIMLGAYADNGHGREALGLFREIQSRGMAIDNVTLVSALKACAVAGDLEEGR 133

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
            IHA     G+ES+ +V  ALVSMY + G +     VF  +  ++ VSWNA+ + +    
Sbjct: 134 GIHASARSLGYESEIIVATALVSMYGKCGHLEEAKAVFATLVERNRVSWNAMLAAYAQNG 193

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
             ++ +R++  M  +G KP+  TF+ +L       +   G ++H   ++     N  +  
Sbjct: 194 HCEEAVRLYRLMCFEGIKPDATTFVSVLDGWKGEGE--HGTRIHDQVLESGFGSNTTLAN 251

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRK---MRLEG 349
           +LV MY   G ++DA   FD +A K + ++ A++T+YAQ G    A+  F K   MR   
Sbjct: 252 ALVSMYGSGGRVDDARYVFDGIAEKTVVSWNAMLTAYAQNGRYGKAVDLFWKMDEMRRAL 311

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           ++ N  T  + L  C+    L  GR +H+     G L  + V  AL+ MY++CG++  A+
Sbjct: 312 VEPNSVTFVNLLVACAATGFLEAGRKIHAEVASLGLLSTLSVGGALINMYSECGNLVLAK 371

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
           +VF     ++  SWN++IG Y   G G++AL   + M  EG  PD+ TF+ VL ACS   
Sbjct: 372 SVFDSVPHKNLVSWNVLIGSYAGDGDGKEALGVHQKMELEGLKPDKFTFISVLHACSASE 431

Query: 470 LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENL 529
            + EGK    ++    G+         +I++ G+ G   +  N   + K   N + W ++
Sbjct: 432 ALAEGKA-IHALIAASGLERDEAIGTALINLYGKCGSLEQARNVFLDMKSRRNLVTWNSM 490

Query: 530 LGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564
           L A    G +E D  +   ++ LE  M     F S
Sbjct: 491 LAAACTKGGLE-DCVEIIHMMGLEGIMPDELTFLS 524



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 131/434 (30%), Positives = 214/434 (49%), Gaps = 8/434 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E AK VF ++ E N VSWNA+L  YA++G  ++ + L+  M     K    +  +VL G
Sbjct: 164 LEEAKAVFATLVERNRVSWNAMLAAYAQNGHCEEAVRLYRLMCFEGIKPDATTFVSVLDG 223

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           +   G  + G  +H   +  G   +  L+ +LV MY   G  D+A  VF  I +  VV+W
Sbjct: 224 WKGEG--EHGTRIHDQVLESGFGSNTTLANALVSMYGSGGRVDDARYVFDGIAEKTVVSW 281

Query: 121 GAIITCLDQQGCCQEAAKIF---NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
            A++T   Q G   +A  +F   + MR + V+PN     +L+ A   TG    G  IHA 
Sbjct: 282 NAMLTAYAQNGRYGKAVDLFWKMDEMRRALVEPNSVTFVNLLVACAATGFLEAGRKIHAE 341

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
           +   G  S   VG AL++MY E G +     VF+++ H++ VSWN L   +       + 
Sbjct: 342 VASLGLLSTLSVGGALINMYSECGNLVLAKSVFDSVPHKNLVSWNVLIGSYAGDGDGKEA 401

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           L +  +M L+G KP+  TFI +L ACS+   +  GK +HA      L+ +  +GT+L+++
Sbjct: 402 LGVHQKMELEGLKPDKFTFISVLHACSASEALAEGKAIHALIAASGLERDEAIGTALINL 461

Query: 298 YDKSGCLEDA-GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           Y K G LE A  V  D  + ++L  + +++ +    G  E  ++    M LEGI  +E T
Sbjct: 462 YGKCGSLEQARNVFLDMKSRRNLVTWNSMLAAACTKGGLEDCVEIIHMMGLEGIMPDELT 521

Query: 357 LASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
             S L  CS   ++  G  L  S  V  G   +      +V +  + G +++A+ V    
Sbjct: 522 FLSVLFACSHGGSIQQGLDLFLSAGVDYGIATNTKHYVCVVDILGRVGRLEEAQEVLNRM 581

Query: 416 ALR-DTASWNMMIG 428
             + +  +W  ++G
Sbjct: 582 PFQANDVAWMTLLG 595



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/445 (27%), Positives = 214/445 (48%), Gaps = 16/445 (3%)

Query: 157 SLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ 216
           S++R      D    +     I + GF  D  +GN LV  Y + G V     VF+ I  +
Sbjct: 17  SILRDCASARDLTAAKQAQWEIARDGFGGDRYLGNLLVQAYGKCGSVRDAREVFDRIQRR 76

Query: 217 DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLH 276
           +  SW  +   + D     + L +F ++  +G   +  T +  LKAC+   D+  G+ +H
Sbjct: 77  NIFSWTIMLGAYADNGHGREALGLFREIQSRGMAIDNVTLVSALKACAVAGDLEEGRGIH 136

Query: 277 AHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAE 336
           A       +   +V T+LV MY K G LE+A   F +L  ++  ++ A++ +YAQ G  E
Sbjct: 137 ASARSLGYESEIIVATALVSMYGKCGHLEEAKAVFATLVERNRVSWNAMLAAYAQNGHCE 196

Query: 337 MALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALV 396
            A++ +R M  EGIK +  T  S L+G        +G  +H   +++G   +  ++ ALV
Sbjct: 197 EAVRLYRLMCFEGIKPDATTFVSVLDGWKGEGE--HGTRIHDQVLESGFGSNTTLANALV 254

Query: 397 AMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM--LDEGYV-P 453
           +MY   G +DDA  VF G A +   SWN M+  Y ++G   KA++ F  M  +    V P
Sbjct: 255 SMYGSGGRVDDARYVFDGIAEKTVVSWNAMLTAYAQNGRYGKAVDLFWKMDEMRRALVEP 314

Query: 454 DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENF 513
           + +TFV +L AC+  G +E G+K  + +  + G+  T+     +I++    G    +   
Sbjct: 315 NSVTFVNLLVACAATGFLEAGRKIHAEVASL-GLLSTLSVGGALINMYSECGNLV-LAKS 372

Query: 514 ITETKLTPNALVWENLLGACSWHGNIELDEKDA---EKLLELEPKMESNYVFPSDISATQ 570
           + ++    N + W  L+G+ +  G    D K+A    + +ELE      + F S + A  
Sbjct: 373 VFDSVPHKNLVSWNVLIGSYAGDG----DGKEALGVHQKMELEGLKPDKFTFISVLHACS 428

Query: 571 GRWNDFSG--VRALLSSQGIKKEPS 593
                  G  + AL+++ G++++ +
Sbjct: 429 ASEALAEGKAIHALIAASGLERDEA 453



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 117/240 (48%), Gaps = 3/240 (1%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           LAK VF S+P  N+VSWN L+  YA  GDG++ + +   M+    K  KF+  +VL   +
Sbjct: 369 LAKSVFDSVPHKNLVSWNVLIGSYAGDGDGKEALGVHQKMELEGLKPDKFTFISVLHACS 428

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD-PDVVAWG 121
            S  +  G+ +HA+    G   D+ +  +L+++Y KCG  + A  VF  +K   ++V W 
Sbjct: 429 ASEALAEGKAIHALIAASGLERDEAIGTALINLYGKCGSLEQARNVFLDMKSRRNLVTWN 488

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH-AVICK 180
           +++     +G  ++  +I ++M    + P++    S++ A +  G  + G  +  +    
Sbjct: 489 SMLAAACTKGGLEDCVEIIHMMGLEGIMPDELTFLSVLFACSHGGSIQQGLDLFLSAGVD 548

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-DSVSWNALFSRFQDYESPDQGLR 239
           YG  ++T     +V +    GR+     V   +  Q + V+W  L    + +   +QG R
Sbjct: 549 YGIATNTKHYVCVVDILGRVGRLEEAQEVLNRMPFQANDVAWMTLLGACRIHRDFEQGRR 608


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 195/547 (35%), Positives = 293/547 (53%), Gaps = 17/547 (3%)

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
           G+ +H  AI  G   D F+S +L+DMY KC    +A  +F  +   D+VAW A++     
Sbjct: 29  GRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAH 88

Query: 130 QGCCQEA-AKIFNL-MRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD- 186
            G    A A + ++ M+   ++PN   L +L+    + G    G S+HA   +     + 
Sbjct: 89  HGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNR 148

Query: 187 ---------TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
                     L+G AL+ MY + G + Y  RVF+A+  ++ V+W+AL   F       Q 
Sbjct: 149 NSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQA 208

Query: 238 LRIFYQMLLKGF---KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
             +F  ML +G     P   +    L+AC+SL  +  G+QLHA   K  +  +   G SL
Sbjct: 209 FLLFKAMLAQGLCFLSPT--SIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSL 266

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           + MY K+G ++ A   FD +A KD  +Y+A+++ Y Q G AE A   F+KM+   ++ + 
Sbjct: 267 LSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDA 326

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            T+ S +  CS +A L +GR  H   +  G   +  +  AL+ MYAKCG ID +  VF  
Sbjct: 327 ATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNM 386

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
              RD  SWN MI GY  HGLG++A   F  M + G+ PD +TF+ +LSACSH GL+ EG
Sbjct: 387 MPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEG 446

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
           K  F  +   YG+TP ++H+ CM+D+L R G   E   FI    L  +  VW  LLGAC 
Sbjct: 447 KHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACR 506

Query: 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSC 594
            + NI+L +K +  + EL P+   N+V  S+I +  GR+++ + VR +   QG KK P C
Sbjct: 507 VYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGC 566

Query: 595 SWIEVDG 601
           SWIE++G
Sbjct: 567 SWIEING 573



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 205/436 (47%), Gaps = 23/436 (5%)

Query: 143 MRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGR 202
           M    V PN +     ++A +   D  CG +IH      G ++D  V  AL+ MY++   
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 203 VSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR--IFYQMLLKGFKPNMCTFIVIL 260
           +   + +F  +  +D V+WNA+ + +  +      +   +  QM +   +PN  T + +L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 261 KACSSLSDVGFGKQLHAHTIKHSLDGNH----------VVGTSLVDMYDKSGCLEDAGVA 310
              +    +  G  +HA+ I+  L  N           ++GT+L+DMY K G L  A   
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 311 FDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI-KSNEFTLASCLNGCSPVAT 369
           FD++  ++   ++A+I  +        A   F+ M  +G+   +  ++AS L  C+ +  
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDH 240

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           L  G  LH++  K+G   D+    +L++MYAK G ID A A+F   A++DT S++ ++ G
Sbjct: 241 LRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSG 300

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITP 489
           YV++G  E+A   F+ M      PD  T V ++ ACSH+  ++ G+    S+  I G+  
Sbjct: 301 YVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSV-IIRGLAS 359

Query: 490 TIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKL 549
                  +ID+  + G+  ++   +     + + + W  ++     HG   L ++     
Sbjct: 360 ETSICNALIDMYAKCGRI-DLSRQVFNMMPSRDIVSWNTMIAGYGIHG---LGKEATALF 415

Query: 550 LELEPKMESNYVFPSD 565
           LE+     +N  FP D
Sbjct: 416 LEM-----NNLGFPPD 426



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 122/468 (26%), Positives = 210/468 (44%), Gaps = 24/468 (5%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESG-DGQKVMHLFCSMKDMEK-KFSKFSLSTVLKGF 61
           A  +F +MP  ++V+WNA+L GYA  G     V HL      M + + +  +L  +L   
Sbjct: 64  AAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLL 123

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDK----------FLSCSLVDMYSKCGLADNALKVFYR 111
           A  G +  G  VHA  IR     ++           L  +L+DMY+KCG    A +VF  
Sbjct: 124 AQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDA 183

Query: 112 IKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFV----LTSLVRATTETGD 167
           +   + V W A+I        C    + F L +    +   F+    + S +RA      
Sbjct: 184 MPARNEVTWSALIGGFV---LCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDH 240

Query: 168 QRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR 227
            R GE +HA++ K G  +D   GN+L+SMY + G +     +F+ +A +D+VS++AL S 
Sbjct: 241 LRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSG 300

Query: 228 FQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGN 287
           +      ++   +F +M     +P+  T + ++ ACS L+ +  G+  H   I   L   
Sbjct: 301 YVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASE 360

Query: 288 HVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL 347
             +  +L+DMY K G ++ +   F+ + ++D+ ++  +I  Y   G  + A   F +M  
Sbjct: 361 TSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNN 420

Query: 348 EGIKSNEFTLASCLNGCSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSID 406
            G   +  T    L+ CS    +  G+   H +    G    M     +V + ++ G +D
Sbjct: 421 LGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLD 480

Query: 407 DAEAVFKGSALR-DTASWNMMIGG---YVKHGLGEKALEAFRMMLDEG 450
           +A    +   LR D   W  ++G    Y    LG+K     + +  EG
Sbjct: 481 EAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEG 528



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 109/242 (45%), Gaps = 2/242 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  +F  M   + VS++AL++GY ++G  ++   +F  M+    +    ++ +++  
Sbjct: 276 IDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPA 335

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ++   ++ G+  H   I  G A +  +  +L+DMY+KCG  D + +VF  +   D+V+W
Sbjct: 336 CSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSW 395

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES-IHAVIC 179
             +I      G  +EA  +F  M      P+      L+ A + +G    G+   H +  
Sbjct: 396 NTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGH 455

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS-WNALFSRFQDYESPDQGL 238
            YG          +V +    G +       +++  +  V  W AL    + Y++ D G 
Sbjct: 456 GYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGK 515

Query: 239 RI 240
           ++
Sbjct: 516 KV 517


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 187/571 (32%), Positives = 315/571 (55%), Gaps = 38/571 (6%)

Query: 64  SGYIKAGQVVHAMAIRLGCAL---DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           + Y KAG+  HA A R+  A+   + F   +L+   +   L  +   +F  +   D+V++
Sbjct: 49  TAYGKAGR--HARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSY 106

Query: 121 GAIITCLDQQGCCQEAAKIFN--LMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            A+I      G   +A +++   L  +SSV+P++  ++++V A +  GD+  G+  H  I
Sbjct: 107 NAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQFHCQI 166

Query: 179 CKYGFESDTLVGNALVSMY----------------------MENGRVS---------YGS 207
            + GF ++  VG+ LV MY                      M N  ++            
Sbjct: 167 LRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEAR 226

Query: 208 RVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLS 267
           R+FE +  +DS++W  + + F       + L IF +M  +G   +  TF  IL AC +LS
Sbjct: 227 RLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALS 286

Query: 268 DVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIIT 327
            +  GKQ+HA+ I+   D N  VG++LVDMY K   ++ A   F  +  K++ ++TA+I 
Sbjct: 287 ALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIV 346

Query: 328 SYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL 387
            Y Q G +E A++ F +M+ +GI  +++TL S ++ C+ +A+L  G   H +A+ +G + 
Sbjct: 347 GYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMH 406

Query: 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML 447
            + VS ALV +Y KCGSI+DA  +F   +  D  SW  ++ GY + G  ++ ++ F  ML
Sbjct: 407 YITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKML 466

Query: 448 DEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKF 507
            +G  PD +TF+ VLSACS  G +E+G+ +F S++K +GI P   H+ CMID+  R+GK 
Sbjct: 467 AKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKL 526

Query: 508 TEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            E E FI +  + P+A+ W  LL AC   G++E+ +  AE LLE++P+  ++YV    + 
Sbjct: 527 KEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEIDPQNPASYVLLCSMH 586

Query: 568 ATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           A +G+WN+ + +R  +  + +KKEP CSWI+
Sbjct: 587 AAKGQWNEVAQLRRGMRDRQVKKEPGCSWIK 617



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 115/456 (25%), Positives = 212/456 (46%), Gaps = 35/456 (7%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM--KDMEKKFSKFSLSTVLKGFANS 64
           +F SM + ++VS+NA++ G++  G   + + ++ ++   D   + S+ ++ST++   +  
Sbjct: 94  LFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASAL 153

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSK-------------------------- 98
           G    G+  H   +RLG   + F+   LVDMY+K                          
Sbjct: 154 GDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMI 213

Query: 99  -----CGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQF 153
                C + + A ++F  + D D + W  ++T   Q G   EA +IF  MR   +  +Q+
Sbjct: 214 TGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQY 273

Query: 154 VLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAI 213
              S++ A         G+ IHA I +  ++ +  VG+ALV MY +   +     VF  +
Sbjct: 274 TFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRM 333

Query: 214 AHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGK 273
             ++ +SW AL   +      ++ +R+F +M   G  P+  T   ++ +C++L+ +  G 
Sbjct: 334 TCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGA 393

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
           Q H   +   L     V  +LV +Y K G +EDA   FD ++  D  ++TA+++ YAQ G
Sbjct: 394 QFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFG 453

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR-LLHSIAVKTGHLLDMFVS 392
            A+  +  F KM  +G+K +  T    L+ CS    +  GR   HS+    G +      
Sbjct: 454 RAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHY 513

Query: 393 TALVAMYAKCGSIDDAEAVFKGSALR-DTASWNMMI 427
           T ++ +Y++ G + +AE   K   +  D   W  ++
Sbjct: 514 TCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLL 549



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 160/313 (51%), Gaps = 11/313 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+R+F+ M + + ++W  ++ G+ ++G   + + +F  M+       +++  ++L  
Sbjct: 222 VEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTA 281

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 ++ G+ +HA  IR     + F+  +LVDMYSKC     A  VF R+   ++++W
Sbjct: 282 CGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISW 341

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    Q GC +EA ++F+ M+   + P+ + L S++ +         G   H +   
Sbjct: 342 TALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALV 401

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G      V NALV++Y + G +    R+F+ ++  D VSW AL S +  +    + + +
Sbjct: 402 SGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDL 461

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV------GTSL 294
           F +ML KG KP+  TFI +L ACS    V  G+        HS+  +H +       T +
Sbjct: 462 FEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYF-----HSMQKDHGIVPIDDHYTCM 516

Query: 295 VDMYDKSGCLEDA 307
           +D+Y +SG L++A
Sbjct: 517 IDLYSRSGKLKEA 529


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 186/597 (31%), Positives = 331/597 (55%), Gaps = 1/597 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF+ +   +V +W  ++  Y + GD  + + +F  M++ +   +K +   +L   A+
Sbjct: 59  AQQVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACAS 118

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +  +K G  +H   ++ G   D F+  +L++MY+KCG    A   F R++  DVV+W A+
Sbjct: 119 TESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAM 178

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q      A  ++  M+   V PN+  L ++  A  +      G+ I++++     
Sbjct: 179 IAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVM 238

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           ESD  V N+ ++M+   G +    R+FE +  +D V+WN + + +   E+  + +R+F +
Sbjct: 239 ESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGR 298

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           +   G K N  TF+++L   +SL+ +  GK +H    +   D + VV T+L+ +Y +   
Sbjct: 299 LQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEA 358

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
              A   F  + +KD+  +T +  +YAQ G  + AL+ F++M+LEG +    TL + L+ 
Sbjct: 359 PGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDT 418

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +A L  GR +HS  ++ G  ++M V TAL+ MY KCG + +A +VF+  A RD   W
Sbjct: 419 CAHLAALQKGRQIHSHIIENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDILVW 478

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N M+G Y +HG  ++ L+ F  M  +G   D ++FV VLSA SH G + +G ++F ++ +
Sbjct: 479 NSMLGAYAQHGYYDETLQLFNQMQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQ 538

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTPNALVWENLLGACSWHGNIELD 542
            + ITPT + + C++D+LGRAG+  E  + + + +   P+ ++W  LLGAC  H   +  
Sbjct: 539 DFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQA 598

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +  AE++LE +P     YV  S++ A  G W+  + +R L+ S+G+KKEP  S IE+
Sbjct: 599 KAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEI 655



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 132/482 (27%), Positives = 244/482 (50%), Gaps = 4/482 (0%)

Query: 57  VLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD 116
           +L+  +++  +  G+ VH      G   +  +   L+ MY++CG    A +VF  ++  D
Sbjct: 11  LLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILERKD 70

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
           V AW  +I    QQG    A  +F  M+E  V P +    +++ A   T   + G  IH 
Sbjct: 71  VFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIHG 130

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
            I + GFE D  VG AL++MY + G V      F+ + H+D VSW A+ +    ++    
Sbjct: 131 QILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFAL 190

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
              ++ +M L G  PN  T   +  A      +  GK +++      ++ +  V  S ++
Sbjct: 191 ARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMN 250

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           M+  +G L DA   F+ + ++D+  +  +IT Y Q      A++ F +++ +GIK+N+ T
Sbjct: 251 MFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDIT 310

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
               LN  + + +LA G+++H +  + G+  D+ V+TAL+++Y +C +   A  +F    
Sbjct: 311 FVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMG 370

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            +D  +W +M   Y ++G  ++AL+ F+ M  EG  P   T V VL  C+H+  +++G++
Sbjct: 371 SKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQ 430

Query: 477 -HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
            H   I+  + +   ++    +I++ G+ GK  E  + + E     + LVW ++LGA + 
Sbjct: 431 IHSHIIENGFRMEMVVE--TALINMYGKCGKMAEARS-VFEKMAKRDILVWNSMLGAYAQ 487

Query: 536 HG 537
           HG
Sbjct: 488 HG 489



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 171/327 (52%)

Query: 149 KPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSR 208
           KP+     +L++  +   +   G  +H  +C  GFE + LV   L+ MY + G V    +
Sbjct: 2   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 61

Query: 209 VFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSD 268
           VFE +  +D  +W  +   +      D+ L +FYQM  +   P   T++ IL AC+S   
Sbjct: 62  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 121

Query: 269 VGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITS 328
           +  G ++H   ++   +G+  VGT+L++MY+K G +  A  +F  L ++D+ ++TA+I +
Sbjct: 122 LKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAA 181

Query: 329 YAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLD 388
             Q  +  +A   +R+M+L+G+  N+ TL +  N       L+ G+ ++S+        D
Sbjct: 182 CVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESD 241

Query: 389 MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
           + V  + + M+   G + DA  +F+    RD  +WN++I  YV++    +A+  F  +  
Sbjct: 242 VRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQ 301

Query: 449 EGYVPDEITFVVVLSACSHMGLIEEGK 475
           +G   ++ITFV++L+  + +  + +GK
Sbjct: 302 DGIKANDITFVLMLNVYTSLTSLAKGK 328



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 124/233 (53%)

Query: 249 FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
           FKP+   F+ +L+ CSS  +V  G+++H H      + N++V   L+ MY + G + +A 
Sbjct: 1   FKPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQ 60

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
             F+ L  KD+FA+T +I  Y Q G+ + AL  F +M+ E +   + T  + LN C+   
Sbjct: 61  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 120

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
           +L +G  +H   ++ G   D+FV TAL+ MY KCGS+  A   FK    RD  SW  MI 
Sbjct: 121 SLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIA 180

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
             V+H     A   +R M  +G VP++IT   V +A      + EGK  +S +
Sbjct: 181 ACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLV 233



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 4/165 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A+ VF+ M + +++ WN++L  YA+ G   + + LF  M+   +K    S  +VL  
Sbjct: 460 MAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGEKADAVSFVSVLSA 519

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD--PDV 117
            ++SG +  G Q   AM           L   +VD+  + G    A+ +  ++    PD 
Sbjct: 520 LSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDG 579

Query: 118 VAWGAII-TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRA 161
           + W  ++  C       Q  A    ++         +V+ S V A
Sbjct: 580 ILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYA 624


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 186/552 (33%), Positives = 306/552 (55%), Gaps = 3/552 (0%)

Query: 53  SLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKF-LSCSLVDMYSKCGLADNALKVFYR 111
           ++  +L+       I+ G+ +H M        + F L+  ++ MYS CG   ++  VF +
Sbjct: 107 AMGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDK 166

Query: 112 IKDPDVVAWGAIITCLDQQGCCQEAAKIFN-LMRESSVKPNQFVLTSLVRATTETGDQRC 170
           ++  ++  W AI++   +    ++A  IF+ L+  +  KP+ F L  +++A     D   
Sbjct: 167 LRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGL 226

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYG-SRVFEAIAHQDSVSWNALFSRFQ 229
           G+ IH +  K    SD  VGNAL++MY + G V     RVF+ +  +   SWNAL   + 
Sbjct: 227 GQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYA 286

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
               P + L ++ QM   G  P+  T   +L ACS +  + +G+++H   +++ L  +  
Sbjct: 287 QNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPF 346

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           +G SL+ +Y   G    A V FD + ++ L ++  +I  Y+Q G  + A+  FR+M  +G
Sbjct: 347 IGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDG 406

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           I+  E  +      CS ++ L  G+ LH  A+K     D+FVS++++ MYAK G I  ++
Sbjct: 407 IQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQ 466

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
            +F     +D ASWN++I GY  HG G++ALE F  ML  G  PD+ TF  +L ACSH G
Sbjct: 467 RIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAG 526

Query: 470 LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENL 529
           L+E+G ++F+ +  ++ I P ++H+ C++D+LGRAG+  +    I E    P++ +W +L
Sbjct: 527 LVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSL 586

Query: 530 LGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589
           L +C  HGN+ L EK A KLLELEP+   NYV  S++ A  G+W+D   VR  +   G++
Sbjct: 587 LSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQ 646

Query: 590 KEPSCSWIEVDG 601
           K+  CSWIEV G
Sbjct: 647 KDAGCSWIEVGG 658



 Score =  211 bits (538), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 138/476 (28%), Positives = 230/476 (48%), Gaps = 21/476 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDM-EKKFSKFSLSTVLKGFA 62
           ++ VF  +   N+  WNA+++ Y  +   +  M +F  +  + E K   F+L  V+K  A
Sbjct: 160 SRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACA 219

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV-AWG 121
               +  GQ++H MA ++    D F+  +L+ MY KCGL + A+K  + + D   V +W 
Sbjct: 220 GLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWN 279

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           A++    Q    ++A  ++  M +S + P+ F + SL+ A +       GE IH    + 
Sbjct: 280 ALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRN 339

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G   D  +G +L+S+Y+  G+      +F+ + H+  VSWN + + +     PD+ + +F
Sbjct: 340 GLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLF 399

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            QML  G +P     + +  ACS LS +  GK+LH   +K  L  +  V +S++DMY K 
Sbjct: 400 RQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKG 459

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           GC+  +   FD L  KD+ ++  II  Y   G  + AL+ F KM   G+K ++FT    L
Sbjct: 460 GCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGIL 519

Query: 362 NGCSPVATLANGRL-------LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA-EAVFK 413
             CS    + +G         LH+I  K  H       T +V M  + G IDDA   + +
Sbjct: 520 MACSHAGLVEDGLEYFNQMLNLHNIEPKLEHY------TCVVDMLGRAGRIDDALRLIEE 573

Query: 414 GSALRDTASWNMMIGGYVKH---GLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
                D+  W+ ++     H   GLGEK   A +++  E   P+    +  L A S
Sbjct: 574 MPGDPDSRIWSSLLSSCRIHGNLGLGEKV--ANKLLELEPEKPENYVLISNLFAGS 627



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 177/367 (48%), Gaps = 11/367 (2%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E  KRVF  M    V SWNALL GYA++ D +K + L+  M D       F++ ++L   
Sbjct: 261 EAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLAC 320

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           +    +  G+ +H  A+R G A+D F+  SL+ +Y  CG    A  +F  ++   +V+W 
Sbjct: 321 SRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWN 380

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            +I    Q G   EA  +F  M    ++P +  +  +  A ++    R G+ +H    K 
Sbjct: 381 VMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKA 440

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
               D  V ++++ MY + G +    R+F+ +  +D  SWN + + +  +    + L +F
Sbjct: 441 HLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELF 500

Query: 242 YQMLLKGFKPNMCTFIVILKACS--SLSDVG---FGKQLHAHTIKHSLDGNHVVGTSLVD 296
            +ML  G KP+  TF  IL ACS   L + G   F + L+ H I+  L+      T +VD
Sbjct: 501 EKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHY----TCVVD 556

Query: 297 MYDKSGCLEDAGVAFDSL-ANKDLFAYTAIITSYAQAGEAEMALKCFRK-MRLEGIKSNE 354
           M  ++G ++DA    + +  + D   ++++++S    G   +  K   K + LE  K   
Sbjct: 557 MLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPEN 616

Query: 355 FTLASCL 361
           + L S L
Sbjct: 617 YVLISNL 623


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 191/600 (31%), Positives = 320/600 (53%), Gaps = 6/600 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A  VF  M E ++ SWN L+ GY ++G   + + L+  +     +   ++  +VL+  A 
Sbjct: 88  AWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIRPDVYTFPSVLRSCAG 147

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +  +  G+ VHA  +R    +D  +  +L+ MY KCG   +A  +F ++   D ++W A+
Sbjct: 148 AMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDRISWNAM 207

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   +   C E  ++F  MRE S+ P+   +TS++ A    GD+R G  +H+ + +  +
Sbjct: 208 ISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAY 267

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           + +  V N+L+ MY+  G       VF  +  +D VSW  + S   D   PD+ L  +  
Sbjct: 268 DGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKT 327

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLH--AHTIKHSLDGNHVVGTSLVDMYDKS 301
           M + G  P+  T   +L AC+SL  +  G +LH  A    H L    VV  SL+DMY K 
Sbjct: 328 MEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHIL--YVVVANSLIDMYSKC 385

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
             +E A   F  + +KD+ ++T++I           AL  FRKM L+  K N  TL S L
Sbjct: 386 KRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILKS-KPNSVTLISAL 444

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           + C+ V  L  G+ +H+ A+K G   D F+  A++ +Y +CG +  A   F  +  +D  
Sbjct: 445 SACARVGALMCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRTALNQFNLNE-KDVG 503

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           +WN+++ GY + G G   +E F+ M++    PD++TF+ +L ACS  G++ EG ++F  +
Sbjct: 504 AWNILLTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACSRSGMVTEGLEYFQRM 563

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
           K  Y ITP +KH+AC++D+LGRAGK  E   FI    + P+  +W  LL AC  H ++ L
Sbjct: 564 KVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIERMPIKPDPAIWGALLNACRIHRHVLL 623

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
            E  A+ + + + +    Y+   ++ A  G+W++ + VR  +  +G+  +P CSW+EV G
Sbjct: 624 GELAAQHIFKQDAESIGYYILLCNLYADSGKWDEVAKVRRTMKEEGLIVDPGCSWVEVKG 683



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 143/542 (26%), Positives = 271/542 (50%), Gaps = 16/542 (2%)

Query: 29  SGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANS-GYIKAGQVVHAMAIRLGCALDKF 87
           SG+ ++ +    SM++++    +     +++   N  GY +   V  A+   L   L   
Sbjct: 11  SGNLEQALKHLASMQEVKIPVEEDCFVALIRLCENKRGYSEGEYVWKAVLSSLVTLLSVR 70

Query: 88  LSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESS 147
           L  +L+ M+ + G   NA  VF R+ + D+ +W  ++    + G   EA  +++ +  + 
Sbjct: 71  LGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAG 130

Query: 148 VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGS 207
           ++P+ +   S++R+     D   G  +HA + ++ F+ D  V NAL++MY++ G V    
Sbjct: 131 IRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSAR 190

Query: 208 RVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLS 267
            +F+ +  +D +SWNA+ S + + +   +GL +F++M      P++ T   ++ AC  L 
Sbjct: 191 MLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLG 250

Query: 268 DVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIIT 327
           D   G QLH++ ++ + DGN  V  SL+ MY   G  ++A   F  +  +D+ ++T II+
Sbjct: 251 DERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIIS 310

Query: 328 SYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL 387
                   + AL+ ++ M + G   +E T+AS L+ C+ +  L  G  LH +A +TGH+L
Sbjct: 311 GCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHIL 370

Query: 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML 447
            + V+ +L+ MY+KC  I+ A  +F     +D  SW  +I G   +    +AL  FR M+
Sbjct: 371 YVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMI 430

Query: 448 DEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGK 506
            +   P+ +T +  LSAC+ +G +  GK+ H  ++K   G    + +   ++D+  R G+
Sbjct: 431 LKSK-PNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFLPN--AILDLYVRCGR 487

Query: 507 F-TEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSD 565
             T +  F    K   +   W  LL   +  G           ++EL  +M  + + P D
Sbjct: 488 MRTALNQFNLNEK---DVGAWNILLTGYAQKGK-------GAMVMELFKRMVESEINPDD 537

Query: 566 IS 567
           ++
Sbjct: 538 VT 539



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 86/166 (51%), Gaps = 2/166 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  +F  +P+ +V+SW +++NG   +    + +  F  M  ++ K +  +L + L  
Sbjct: 388 IEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMI-LKSKPNSVTLISALSA 446

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A  G +  G+ +HA A++ G   D FL  +++D+Y +CG    AL  F  + + DV AW
Sbjct: 447 CARVGALMCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRTALNQF-NLNEKDVGAW 505

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
             ++T   Q+G      ++F  M ES + P+     SL+ A + +G
Sbjct: 506 NILLTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACSRSG 551


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 179/596 (30%), Positives = 327/596 (54%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A R+F+ MPE N+V W+A++ GY ++    + + LF  M  +    S+ + ++V +  A 
Sbjct: 192 AFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAG 251

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
               K G  +H  A++   A D  +  + +DMY+KC    +A KVF  + +P   ++ AI
Sbjct: 252 LSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAI 311

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    +Q    +A +IF  ++ + +  ++  L+  + A +       G  +H +  K G 
Sbjct: 312 IVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGLAVKCGL 371

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             +  V N ++ MY + G +     +F+ +  +D+VSWNA+ +  +  E   + L +F  
Sbjct: 372 GFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVS 431

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           ML    +P+  T+  ++KAC+    + +G ++H   +K  +  +  VG++LVDMY K G 
Sbjct: 432 MLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGM 491

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L +A    D L  K   ++ +II+ ++   ++E A + F +M   G+  + FT A+ L+ 
Sbjct: 492 LMEAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDV 551

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +AT+  G+ +H+  +K     D+++++ LV MY+KCG++ D+  +F+ +  RD  +W
Sbjct: 552 CANMATIELGKQIHAQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYVTW 611

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           + MI  Y  HG GE+A++ F  M      P+   F+ VL AC+HMG +++G  +F  ++ 
Sbjct: 612 SAMICAYAYHGHGEQAIKLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQIMQS 671

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            YG+ P ++H++CM+D+LGR+ +  E    I       + ++W  LL  C   GN+E+ E
Sbjct: 672 HYGLDPHMEHYSCMVDLLGRSDQVNEALKLIESMHFEADDVIWRTLLSNCKMQGNVEVAE 731

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           K    LL+L+P+  S YV  +++ A  G W + + +R+++ +  +KKEP CSWIEV
Sbjct: 732 KAFNSLLQLDPQDSSAYVLLANVYANVGMWGEVAKIRSIMKNCKLKKEPGCSWIEV 787



 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 167/559 (29%), Positives = 270/559 (48%), Gaps = 10/559 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A+ +F +MPE +VVSWN+LL+ Y  +G  +K + +F  M+ ++      + S VLK 
Sbjct: 88  MGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFSVVLKA 147

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +       G  VH +AI++G   D     +LVDMYSKC   D A ++F  + + ++V W
Sbjct: 148 CSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDGAFRIFREMPERNLVCW 207

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    Q     E  K+F  M +  +  +Q    S+ R+       + G  +H    K
Sbjct: 208 SAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALK 267

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR- 239
             F  D+++G A + MY +  R+S   +VF  + +    S+NA+      Y   DQGL+ 
Sbjct: 268 SDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIV---GYARQDQGLKA 324

Query: 240 --IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
             IF  +       +  +    L ACS +     G QLH   +K  L  N  V  +++DM
Sbjct: 325 LEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGLAVKCGLGFNICVANTILDM 384

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K G L +A   FD +  +D  ++ AII ++ Q  E    L  F  M    ++ ++FT 
Sbjct: 385 YGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTY 444

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
            S +  C+    L  G  +H   VK+G  LD FV +ALV MY KCG + +AE +      
Sbjct: 445 GSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHDRLEE 504

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           + T SWN +I G+      E A   F  ML+ G +PD  T+  VL  C++M  IE GK+ 
Sbjct: 505 KTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMATIELGKQI 564

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
            + I K+  +   +   + ++D+  + G   +    + E     + + W  ++ A ++HG
Sbjct: 565 HAQILKL-NLHSDVYIASTLVDMYSKCGNMQD-SRLMFEKTPKRDYVTWSAMICAYAYHG 622

Query: 538 NIELDEKDAE--KLLELEP 554
           + E   K  E  +LL ++P
Sbjct: 623 HGEQAIKLFEEMQLLNVKP 641



 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 135/534 (25%), Positives = 249/534 (46%), Gaps = 35/534 (6%)

Query: 51  KFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFY 110
           KF+ S +L+  +N   +  G+  HA  I        +++  LV  Y K    + A KVF 
Sbjct: 6   KFTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFD 65

Query: 111 RIK-------------------------------DPDVVAWGAIITCLDQQGCCQEAAKI 139
           R+                                + DVV+W ++++C    G  +++ +I
Sbjct: 66  RMPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEI 125

Query: 140 FNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYME 199
           F  MR   +  +    + +++A +   D   G  +H +  + GFE+D + G+ALV MY +
Sbjct: 126 FVRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSK 185

Query: 200 NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVI 259
             ++    R+F  +  ++ V W+A+ + +   +   +GL++F  ML  G   +  T+  +
Sbjct: 186 CKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASV 245

Query: 260 LKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL 319
            ++C+ LS    G QLH H +K     + ++GT+ +DMY K   + DA   F++L N   
Sbjct: 246 FRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPR 305

Query: 320 FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSI 379
            +Y AII  YA+  +   AL+ F+ ++   +  +E +L+  L  CS +     G  LH +
Sbjct: 306 QSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGL 365

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
           AVK G   ++ V+  ++ MY KCG++ +A  +F     RD  SWN +I  + ++    K 
Sbjct: 366 AVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKT 425

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMI 498
           L  F  ML     PD+ T+  V+ AC+    +  G + H   +K   G+   +   + ++
Sbjct: 426 LSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVG--SALV 483

Query: 499 DILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLEL 552
           D+ G+ G   E E  I +       + W +++   S     E  ++   ++LE+
Sbjct: 484 DMYGKCGMLMEAEK-IHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEM 536



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 111/385 (28%), Positives = 179/385 (46%), Gaps = 15/385 (3%)

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           D +  N ++  Y E G + +   +F+ +  +D VSWN+L S +       + + IF +M 
Sbjct: 71  DVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMR 130

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
                 +  TF V+LKACS + D G G Q+H   I+   + + V G++LVDMY K   L+
Sbjct: 131 SLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLD 190

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
            A   F  +  ++L  ++A+I  Y Q       LK F+ M   G+  ++ T AS    C+
Sbjct: 191 GAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCA 250

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
            ++    G  LH  A+K+    D  + TA + MYAKC  + DA  VF         S+N 
Sbjct: 251 GLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNA 310

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM-GLIEEGKKHFSSIKKI 484
           +I GY +   G KALE F+ +       DEI+    L+ACS + G +E  + H  ++K  
Sbjct: 311 IIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGLAVKCG 370

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEK 544
            G    + +   ++D+ G+ G   E      + +             A SW+  I   E+
Sbjct: 371 LGFNICVAN--TILDMYGKCGALVEACTIFDDMERR----------DAVSWNAIIAAHEQ 418

Query: 545 DAE--KLLELEPKMESNYVFPSDIS 567
           + E  K L L   M  + + P D +
Sbjct: 419 NEEIVKTLSLFVSMLRSTMEPDDFT 443



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 59/146 (40%), Gaps = 31/146 (21%)

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
           + +FT +  L  CS +  L  G+  H+  + T  +  ++V+  LV  Y K  +++ A  V
Sbjct: 4   TKKFTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKV 63

Query: 412 FKGSALRDTASWNMMIGGYVK-------------------------------HGLGEKAL 440
           F     RD  SWN MI GY +                               +G+  K++
Sbjct: 64  FDRMPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSI 123

Query: 441 EAFRMMLDEGYVPDEITFVVVLSACS 466
           E F  M       D  TF VVL ACS
Sbjct: 124 EIFVRMRSLKIPHDYATFSVVLKACS 149



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 85/169 (50%), Gaps = 9/169 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ ++ +F+  P+ + V+W+A++  YA  G G++ + LF  M+ +  K +     +VL+ 
Sbjct: 593 MQDSRLMFEKTPKRDYVTWSAMICAYAYHGHGEQAIKLFEEMQLLNVKPNHTIFISVLRA 652

Query: 61  FANSGYIKAGQVVHAMAI-RLGCALDKFL---SCSLVDMYSKCGLADNALKVFYRIK-DP 115
            A+ GY+  G  +H   I +    LD  +   SC +VD+  +    + ALK+   +  + 
Sbjct: 653 CAHMGYVDKG--LHYFQIMQSHYGLDPHMEHYSC-MVDLLGRSDQVNEALKLIESMHFEA 709

Query: 116 DVVAWGAIITCLDQQGCCQEAAKIFN-LMRESSVKPNQFVLTSLVRATT 163
           D V W  +++    QG  + A K FN L++      + +VL + V A  
Sbjct: 710 DDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDSSAYVLLANVYANV 758


>gi|413932452|gb|AFW67003.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 719

 Score =  347 bits (891), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 196/593 (33%), Positives = 307/593 (51%), Gaps = 7/593 (1%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           +F  MP  NVV+W   ++G   +G  +    +F  M +     + F+ +  L   A +G 
Sbjct: 92  LFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADMLESGVAPNDFACNAALAACAAAGA 151

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +  G+ VH++A+R G A D ++   L+++YS+CG    A +VF R++ PDVV + ++++ 
Sbjct: 152 LGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSLRAAEEVFRRMEAPDVVGYTSLVSA 211

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
           L + G    A  +   M    ++PN+  +TS++ A    G    GE IH  + K      
Sbjct: 212 LCRNGELARAVDVLCQMTRQGLQPNEHTMTSML-AECPRG---IGEQIHGYMLKVMGSQS 267

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
                AL+  Y   G       VFE +  ++ VSW ++          D  LR+F +M+ 
Sbjct: 268 VYASTALIDFYSRYGDFGTAKTVFENLESKNVVSWCSMMQLCIRDGRLDDALRVFSEMIS 327

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           +G +PN   F + L AC S   V  G+Q+H   IK  L  +  V  +L+ MY +SG + +
Sbjct: 328 EGVQPNEFAFSIALSACGS---VCLGRQIHCSAIKRDLMTDIRVSNALLSMYGRSGFVSE 384

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
                  + N DL ++TA I++  Q G +E A+    +M  EG   N++  +S L+ C+ 
Sbjct: 385 LEAVLGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCAD 444

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           +A L  GR LH +A+K G    +    AL+ MY+KCG I  A   F      D  SWN +
Sbjct: 445 LALLHQGRQLHCLALKLGCDFKVCTGNALINMYSKCGRIGSARLAFDVMDTHDVMSWNSL 504

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           I G  +HG    ALE F  M    + PD+ TF+ VL  C+H GL++EG+  F  +   YG
Sbjct: 505 IHGLAQHGDANLALETFSEMCSSDWRPDDSTFLSVLVGCNHAGLVKEGETFFRQMTDRYG 564

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDA 546
           +TPT  H+ACMID+LGR G+F E    I      P+ L+W+ LL +C  H N+++ +  A
Sbjct: 565 LTPTPSHYACMIDMLGRNGRFAEALRMIENMPFEPDVLIWKTLLASCKLHRNLDIGKLAA 624

Query: 547 EKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +KL+EL  +  ++YV  S++ A    W D   VR  +   G+KK+   SWIEV
Sbjct: 625 DKLMELSERDSASYVLMSNLYAMHEEWRDAERVRRRMDEIGVKKDAGWSWIEV 677



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 124/458 (27%), Positives = 217/458 (47%), Gaps = 11/458 (2%)

Query: 85  DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMR 144
           D  L C  +D   K G   +AL +F R+   +VVAW   I+   + G  + AA +F  M 
Sbjct: 69  DVVLDCKRLDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADML 128

Query: 145 ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVS 204
           ES V PN F   + + A    G    GE +H++  + GF +D  +G+ L+ +Y   G + 
Sbjct: 129 ESGVAPNDFACNAALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSLR 188

Query: 205 YGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACS 264
               VF  +   D V + +L S         + + +  QM  +G +PN  T   +L  C 
Sbjct: 189 AAEEVFRRMEAPDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAECP 248

Query: 265 SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA 324
                G G+Q+H + +K     +    T+L+D Y + G    A   F++L +K++ ++ +
Sbjct: 249 R----GIGEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVVSWCS 304

Query: 325 IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           ++    + G  + AL+ F +M  EG++ NEF  +  L+ C  V     GR +H  A+K  
Sbjct: 305 MMQLCIRDGRLDDALRVFSEMISEGVQPNEFAFSIALSACGSVCL---GRQIHCSAIKRD 361

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
            + D+ VS AL++MY + G + + EAV       D  SW   I    ++G  EKA+    
Sbjct: 362 LMTDIRVSNALLSMYGRSGFVSELEAVLGKIENPDLVSWTAAISANFQNGFSEKAVALLL 421

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGR 503
            M  EG+ P++  F   LS+C+ + L+ +G++ H  ++K   G    +     +I++  +
Sbjct: 422 QMHSEGFTPNDYAFSSGLSSCADLALLHQGRQLHCLALK--LGCDFKVCTGNALINMYSK 479

Query: 504 AGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
            G+         +   T + + W +L+   + HG+  L
Sbjct: 480 CGRIGSAR-LAFDVMDTHDVMSWNSLIHGLAQHGDANL 516



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 186/374 (49%), Gaps = 9/374 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A+ VF+ M   +VV + +L++    +G+  + + + C M     + ++ +++++L  
Sbjct: 187 LRAAEEVFRRMEAPDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAE 246

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                    G+ +H   +++  +   + S +L+D YS+ G    A  VF  ++  +VV+W
Sbjct: 247 CPRG----IGEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVVSW 302

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +++    + G   +A ++F+ M    V+PN+F  +    A +  G    G  IH    K
Sbjct: 303 CSMMQLCIRDGRLDDALRVFSEMISEGVQPNEFAFSI---ALSACGSVCLGRQIHCSAIK 359

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS-RFQDYESPDQGLR 239
               +D  V NAL+SMY  +G VS    V   I + D VSW A  S  FQ+  S ++ + 
Sbjct: 360 RDLMTDIRVSNALLSMYGRSGFVSELEAVLGKIENPDLVSWTAAISANFQNGFS-EKAVA 418

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +  QM  +GF PN   F   L +C+ L+ +  G+QLH   +K   D     G +L++MY 
Sbjct: 419 LLLQMHSEGFTPNDYAFSSGLSSCADLALLHQGRQLHCLALKLGCDFKVCTGNALINMYS 478

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G +  A +AFD +   D+ ++ ++I   AQ G+A +AL+ F +M     + ++ T  S
Sbjct: 479 KCGRIGSARLAFDVMDTHDVMSWNSLIHGLAQHGDANLALETFSEMCSSDWRPDDSTFLS 538

Query: 360 CLNGCSPVATLANG 373
            L GC+    +  G
Sbjct: 539 VLVGCNHAGLVKEG 552



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 146/327 (44%), Gaps = 5/327 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AK VF+++   NVVSW +++      G     + +F  M     + ++F+ S  L     
Sbjct: 287 AKTVFENLESKNVVSWCSMMQLCIRDGRLDDALRVFSEMISEGVQPNEFAFSIALSA--- 343

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G +  G+ +H  AI+     D  +S +L+ MY + G       V  +I++PD+V+W A 
Sbjct: 344 CGSVCLGRQIHCSAIKRDLMTDIRVSNALLSMYGRSGFVSELEAVLGKIENPDLVSWTAA 403

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   Q G  ++A  +   M      PN +  +S + +  +      G  +H +  K G 
Sbjct: 404 ISANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCADLALLHQGRQLHCLALKLGC 463

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           +     GNAL++MY + GR+      F+ +   D +SWN+L      +   +  L  F +
Sbjct: 464 DFKVCTGNALINMYSKCGRIGSARLAFDVMDTHDVMSWNSLIHGLAQHGDANLALETFSE 523

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAH-TIKHSLDGNHVVGTSLVDMYDKSG 302
           M    ++P+  TF+ +L  C+    V  G+      T ++ L         ++DM  ++G
Sbjct: 524 MCSSDWRPDDSTFLSVLVGCNHAGLVKEGETFFRQMTDRYGLTPTPSHYACMIDMLGRNG 583

Query: 303 CLEDAGVAFDSLA-NKDLFAYTAIITS 328
              +A    +++    D+  +  ++ S
Sbjct: 584 RFAEALRMIENMPFEPDVLIWKTLLAS 610


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 185/597 (30%), Positives = 315/597 (52%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F ++P+ + V WN +LNGY ++GD    + +F  M+  E K +  + + VL   A+
Sbjct: 112 AQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCAS 171

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G  +H +A+  G  LD  ++ +L+ MYSKC     A K+F  +   D+V+W  I
Sbjct: 172 EAMLDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGI 231

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   Q G   EA  +F  M  + +KP+     S +    E    +  + IH  I ++  
Sbjct: 232 ISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAV 291

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D  + +AL+ +Y +   V    +     +  D+V    + S +       + L  F  
Sbjct: 292 VLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRW 351

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           ++ +  KP   TF  I  A + L+ +  GK+LH   IK  LD    VG++++DMY K G 
Sbjct: 352 LVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGR 411

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L+ A   F+ +  KD   + ++ITS +Q G    A+  FR+M +EG + +  +++  L+ 
Sbjct: 412 LDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSA 471

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +  L  G+ +H + +K     D++  ++L+ MYAKCG+++ +  VF     ++  SW
Sbjct: 472 CANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEVSW 531

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I  Y  HG  ++ L  F  ML  G  PD +TF+ ++SAC H G ++EG +++  + +
Sbjct: 532 NSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTE 591

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            YGI   ++H+AC+ D+ GRAG+  E    I      P+A VW  LLGAC  HGN+EL E
Sbjct: 592 EYGIPARMEHYACVADMFGRAGRLHEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAE 651

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
             ++ L +L+P     YV  +++ A  G+W     VR+++  +G++K P  SWIEV+
Sbjct: 652 VASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKERGVRKVPGYSWIEVN 708



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 127/446 (28%), Positives = 218/446 (48%), Gaps = 8/446 (1%)

Query: 95  MYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFV 154
           MY + G   +A  +FY ++     AW  +I      G    A   +  M  + V P+++ 
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 155 LTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA 214
              +V+A       + G+ +H  +   G + D  VG++L+ +Y ENG +S    +F+ I 
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 215 HQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ 274
            +DSV WN + + +         ++IF +M     KPN  TF  +L  C+S + +  G Q
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 275 LHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGE 334
           LH   +   L+ +  V  +L+ MY K  CL+ A   FD+L   DL ++  II+ Y Q G 
Sbjct: 181 LHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGL 240

Query: 335 AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA 394
              A   FR M   GIK +  T AS L   + + +L + + +H   ++   +LD+F+ +A
Sbjct: 241 MGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSA 300

Query: 395 LVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD 454
           L+ +Y KC  ++ A+     S+  DT     MI GYV +G  ++ALEAFR ++ E   P 
Sbjct: 301 LIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPT 360

Query: 455 EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKF---TEIE 511
            +TF  +  A + +  +  GK+   SI K   +       + ++D+  + G+      + 
Sbjct: 361 SVTFSSIFPAFAGLAALNLGKELHGSIIKT-KLDEKCHVGSAILDMYAKCGRLDLACRVF 419

Query: 512 NFITETKLTPNALVWENLLGACSWHG 537
           N ITE     +A+ W +++ +CS +G
Sbjct: 420 NRITEK----DAICWNSMITSCSQNG 441



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 143/565 (25%), Positives = 252/565 (44%), Gaps = 11/565 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AK +F ++      +WN ++ G+   G     +  +  M        K++   V+K    
Sbjct: 11  AKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFPYVVKACCG 70

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +K G++VH     +G   D F+  SL+ +Y++ G   +A  +F  I   D V W  +
Sbjct: 71  LKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVM 130

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    + G    A KIF  MR S +KPN      ++           G  +H +    G 
Sbjct: 131 LNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVGCGL 190

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E D+ V N L++MY +   +    ++F+ +   D VSWN + S +       +   +F  
Sbjct: 191 ELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRG 250

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M+  G KP+  TF   L   + L  +   K++H + I+H++  +  + ++L+D+Y K   
Sbjct: 251 MISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRD 310

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +E A       ++ D    T +I+ Y   G+ + AL+ FR +  E +K    T +S    
Sbjct: 311 VEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPA 370

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
            + +A L  G+ LH   +KT       V +A++ MYAKCG +D A  VF     +D   W
Sbjct: 371 FAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICW 430

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK 482
           N MI    ++G   +A+  FR M  EG   D ++    LSAC+++  +  GK+ H   IK
Sbjct: 431 NSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIK 490

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
               +   +   + +ID+  + G        + +     N + W +++ A   HG     
Sbjct: 491 G--PLRSDLYAESSLIDMYAKCGNLN-FSRRVFDRMQEKNEVSWNSIISAYGNHG----- 542

Query: 543 EKDAEKLLELEPKMESNYVFPSDIS 567
             D ++ L L  +M  N + P  ++
Sbjct: 543 --DLKECLALFHEMLRNGIQPDHVT 565



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/450 (25%), Positives = 210/450 (46%), Gaps = 2/450 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+++F ++P+ ++VSWN +++GY ++G   +  HLF  M     K    + ++ L  
Sbjct: 210 LQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPC 269

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 +K  + +H   IR    LD FL  +L+D+Y KC   + A K   +    D V  
Sbjct: 270 VNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVC 329

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+     G  +EA + F  + +  +KP     +S+  A         G+ +H  I K
Sbjct: 330 TTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIK 389

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              +    VG+A++ MY + GR+    RVF  I  +D++ WN++ +       P + + +
Sbjct: 390 TKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINL 449

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QM ++G + +  +    L AC++L  + +GK++H   IK  L  +    +SL+DMY K
Sbjct: 450 FRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAK 509

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L  +   FD +  K+  ++ +II++Y   G+ +  L  F +M   GI+ +  T    
Sbjct: 510 CGNLNFSRRVFDRMQEKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGI 569

Query: 361 LNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA-EAVFKGSALR 418
           ++ C     +  G R  H +  + G    M     +  M+ + G + +A E +       
Sbjct: 570 ISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLHEAFETINSMPFPP 629

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
           D   W  ++G    HG  E A  A + + D
Sbjct: 630 DAGVWGTLLGACHIHGNVELAEVASKHLFD 659


>gi|125579001|gb|EAZ20147.1| hypothetical protein OsJ_35746 [Oryza sativa Japonica Group]
          Length = 601

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 194/591 (32%), Positives = 316/591 (53%), Gaps = 8/591 (1%)

Query: 11  MPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAG 70
           MPE +VVSWN+L++ +  +G          SM       +  SL +V+         K G
Sbjct: 1   MPERDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFG 60

Query: 71  QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
             +HA+A+++G      L+ +LVDMY K G  + +++VF  + + + V+W + I C    
Sbjct: 61  LSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNA 120

Query: 131 GCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVG 190
           G   +  ++F  M E +V P    L+SL+ A  E G    G  +H    K   + D  V 
Sbjct: 121 GFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVA 180

Query: 191 NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFK 250
           N+LV MY + G +   S +FE +  ++ VSWNA+ +      +  +  R+   M   G  
Sbjct: 181 NSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGEC 240

Query: 251 PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVA 310
           PN  T + +L AC+ ++ +  GKQ+HA +I+  L  +  +  +L+DMY K G L  A   
Sbjct: 241 PNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNI 300

Query: 311 FDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATL 370
           F+  + KD  +Y  +I  Y+Q+     +L  F++MR  GI  +  +    L+ C+ ++  
Sbjct: 301 FER-SEKDDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVF 359

Query: 371 ANGRLLHSIAVK---TGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
            +G+ +H + V+   +GH    F+S +L+ +Y K G +  A  +F     +D ASWN MI
Sbjct: 360 KHGKEIHCVLVRRLLSGH---PFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMI 416

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGI 487
            GY  HG  + A E F +M  +G   D ++++ VL+ACSH GL+++GKK+FS +     I
Sbjct: 417 LGYGMHGQIDIAFELFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVA-QNI 475

Query: 488 TPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAE 547
            P   H+ACM+D+LGRAG+ ++    I +     N+ VW  LLGAC  HGNIEL +  AE
Sbjct: 476 EPQQMHYACMVDLLGRAGQLSKCAEIIRDMPFPANSDVWGALLGACRIHGNIELAQWAAE 535

Query: 548 KLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
            L EL+P+    Y    ++ A  GRWN+ + +R L+ S+ ++K P+ SW++
Sbjct: 536 HLFELKPEHSGYYTLMINMYAETGRWNEANKIRKLMKSRKVQKNPAYSWVQ 586



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 121/435 (27%), Positives = 209/435 (48%), Gaps = 2/435 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E + +VF  M E N VSWN+ +  +  +G    V+ +F  M +        +LS++L  
Sbjct: 92  VEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPA 151

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
               G    G+ VH  +I+    LD F++ SLVDMY+K G  + A  +F ++KD +VV+W
Sbjct: 152 LVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSW 211

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I  L Q G   EA ++   M++S   PN   L +++ A       + G+ IHA   +
Sbjct: 212 NAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIR 271

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G   D  + NAL+ MY + G++S    +FE  + +D VS+N L   +       + L +
Sbjct: 272 RGLMFDLFISNALIDMYSKCGQLSLARNIFER-SEKDDVSYNTLILGYSQSPWCFESLLL 330

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QM   G   +  +F+  L AC++LS    GK++H   ++  L G+  +  SL+D+Y K
Sbjct: 331 FKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPFLSNSLLDLYTK 390

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L  A   F+ +  KD+ ++  +I  Y   G+ ++A + F  M+ +G+  +  +  + 
Sbjct: 391 GGMLVTASKIFNKITKKDVASWNTMILGYGMHGQIDIAFELFELMKGDGLDYDHVSYIAV 450

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD-AEAVFKGSALRD 419
           L  CS    +  G+   S  V             +V +  + G +   AE +       +
Sbjct: 451 LAACSHGGLVDKGKKYFSQMVAQNIEPQQMHYACMVDLLGRAGQLSKCAEIIRDMPFPAN 510

Query: 420 TASWNMMIGGYVKHG 434
           +  W  ++G    HG
Sbjct: 511 SDVWGALLGACRIHG 525


>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial [Vitis vinifera]
 gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
          Length = 700

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 189/602 (31%), Positives = 321/602 (53%), Gaps = 4/602 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCS-MKDMEKKFSKFSLSTVLK 59
           +E A+ +F  +   ++ SW  ++  Y  +    +++  + + ++    ++     S VLK
Sbjct: 87  VECARLMFDRIRNPDLYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLK 146

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             +       G+ +H   +++G   D F+   LVDMY+KC   +++ +VF  I D +VV 
Sbjct: 147 ACSELRETDEGRKLHCQIVKVGSP-DSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVC 205

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W ++I    Q  C +E   +FN MRE  V+ NQ+ L SLV A T+ G    G+ +H  + 
Sbjct: 206 WTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVI 265

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K GF+ ++ +   L+ +Y + G +     VF+ ++  D VSW A+   +     P + L+
Sbjct: 266 KSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALK 325

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F     K   PN  T   +L AC+    +  G+ +H   IK   + +     +LVDMY 
Sbjct: 326 LFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGSE-DATFENALVDMYA 384

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K   + DA   F+++ +KD+ A+ +II+ Y Q G A  AL+ F +MR + +  +  TL S
Sbjct: 385 KCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVS 444

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLL-DMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
            L+ C+ V     G  LH  A+K G L   ++V TAL+  YAKCG  + A  +F     +
Sbjct: 445 VLSACASVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKCGDAESARVIFDEMGEK 504

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           +T +W+ MIGGY   G   ++LE F  ML E   P+E+ F  +LSACSH G++ EG ++F
Sbjct: 505 NTITWSAMIGGYGIQGDCSRSLELFGDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYF 564

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           +++ ++Y   P++KH+ACM+D+L RAG+  E  +FI +  + P+  +    L  C  H  
Sbjct: 565 NTMCQVYNFVPSMKHYACMVDLLARAGRLEEALDFIEKIPIQPDVSLLGAFLHGCRLHSR 624

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
            +L E    ++LEL P     YV  S++ A++GRW+  + V  L+  +G+ K P  S ++
Sbjct: 625 FDLGEVAVRRMLELHPDKACYYVLMSNLYASEGRWSQANQVMELMKQRGLAKLPGWSLVD 684

Query: 599 VD 600
           ++
Sbjct: 685 IE 686



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 149/500 (29%), Positives = 233/500 (46%), Gaps = 37/500 (7%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           +HA+ +  G + D      LV +Y   G  + A  +F RI++PD+ +W  +I        
Sbjct: 58  IHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMIRWYFLNDS 117

Query: 133 CQEAAKIFNL-MRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGN 191
             E  + +N  +R+   + +  V + +++A +E  +   G  +H  I K G   D+ V  
Sbjct: 118 YSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKLHCQIVKVG-SPDSFVLT 176

Query: 192 ALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKP 251
            LV MY +   V    RVF+ I  ++ V W ++   +   +   +GL +F +M     + 
Sbjct: 177 GLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEG 236

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF 311
           N  T   ++ AC+ L  +  GK +H + IK   D N  + T L+D+Y K G + DA   F
Sbjct: 237 NQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVF 296

Query: 312 DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLA 371
           D L+  DL ++TA+I  YAQ G    ALK F   R + +  N  T +S L+ C+   +L 
Sbjct: 297 DELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLN 356

Query: 372 NGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV 431
            GR +H + +K G   D     ALV MYAKC  I DA  VF+    +D  +WN +I GY 
Sbjct: 357 MGRSVHCLGIKLGS-EDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYT 415

Query: 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK------KI 484
           ++G   +ALE F  M  +   PD IT V VLSAC+ +G    G   H  +IK       +
Sbjct: 416 QNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGSV 475

Query: 485 YGITPTIKHFA---------CMIDILGRAGKFT------------------EIENFITET 517
           Y  T  +  +A          + D +G     T                  E+   + + 
Sbjct: 476 YVGTALLNFYAKCGDAESARVIFDEMGEKNTITWSAMIGGYGIQGDCSRSLELFGDMLKE 535

Query: 518 KLTPNALVWENLLGACSWHG 537
           KL PN +++  +L ACS  G
Sbjct: 536 KLEPNEVIFTTILSACSHSG 555



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 146/333 (43%), Gaps = 46/333 (13%)

Query: 246 LKGFKPNMC-TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
           ++    N C + + I K  SSL      +++HA  + H L  + +  T LV +Y   G +
Sbjct: 34  IQSISSNPCFSLLGICKTVSSL------RKIHALLVVHGLSEDLLCETKLVSLYGSFGHV 87

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI--KSNEFTLASCLN 362
           E A + FD + N DL+++  +I  Y    ++   +  F   RL     + +    +  L 
Sbjct: 88  ECARLMFDRIRNPDLYSWKVMIRWYF-LNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLK 146

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            CS +     GR LH   VK G   D FV T LV MYAKC  ++D+  VF     R+   
Sbjct: 147 ACSELRETDEGRKLHCQIVKVGS-PDSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVC 205

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVP-DEITFVVVLSACSHMGLIEEGK-KHFSS 480
           W  MI GYV++   ++ L  F  M  EG V  ++ T   +++AC+ +G + +GK  H   
Sbjct: 206 WTSMIVGYVQNDCLKEGLVLFNRM-REGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYV 264

Query: 481 IKKIYG-----ITPTIK-HFAC-----------------------MIDILGRAGKFTEIE 511
           IK  +      +TP +  +F C                       MI    + G   E  
Sbjct: 265 IKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREAL 324

Query: 512 NFITETK---LTPNALVWENLLGACSWHGNIEL 541
              T+ +   L PN +   ++L AC+  G++ +
Sbjct: 325 KLFTDERWKDLLPNTVTTSSVLSACAQTGSLNM 357


>gi|168066429|ref|XP_001785140.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663262|gb|EDQ50036.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 922

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 201/602 (33%), Positives = 326/602 (54%), Gaps = 6/602 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +ELA++VF  M E NVVSW A+++GY + GD ++   LF  +     + +K S +++L  
Sbjct: 203 LELARKVFNEMRERNVVSWTAMISGYVQHGDSKEAFVLFQKLIRSGTQPNKVSFASILGA 262

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             N   ++ G  +HA   + G   +  +  +L+ MY++CG   NA +VF  ++ P+ V+W
Sbjct: 263 CTNPNDLEQGLKLHAYIKQAGLEQEVLVGNALISMYARCGSLANARQVFDNLRSPNRVSW 322

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    + G  +EA ++F  M++   +P++F   SL+    +  D   G+ +H+ I +
Sbjct: 323 NAMIAGYGE-GFMEEAFRLFRDMQQKGFQPDRFTYASLLAICADRADLNRGKELHSQIVR 381

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             +E+D  V  AL+SMY + G +    +VF  +  +++VSWNA  +    + S  +  ++
Sbjct: 382 TAWEADVTVATALISMYAKCGSLEEARKVFNQMPEKNAVSWNAFIACCCRHGSEKEAFQV 441

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QM      P+  TFI +L +C+S  D   G+ +H    +  +  N++V  +L+ MY +
Sbjct: 442 FKQMRRDDVIPDHVTFITLLNSCTSPEDFERGRYIHGKIDQWGMLSNNLVANALISMYGR 501

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L DA   F  +  +DL ++ A+I +Y Q G    A   F K + EG K +++T  + 
Sbjct: 502 CGKLADAREVFYRIRRRDLGSWNAMIAAYVQHGANGSAFDLFIKYKSEGGKGDKYTFINV 561

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L   + +  L  GR +H +  K G   D+ + T L+ MY+KCGS+ DA +VFK    +D 
Sbjct: 562 LRAIANLEDLDAGRKIHGLVEKAGLEKDIRILTTLIKMYSKCGSLRDAYSVFKNVQEKDV 621

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
             WN M+  Y     G+ AL+ F+ M  EG  PD  T+  VL+AC+ +G IE GKK  + 
Sbjct: 622 VCWNAMLAAYNHSDHGQDALKLFQQMRLEGVNPDSATYTSVLNACARLGAIEHGKKFHTQ 681

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +K+    T T +H+ACM+  LGRA    E E FI E     +AL+WE+LL AC  H N+ 
Sbjct: 682 LKEAAMETDT-RHYACMVAALGRASLLKEAEEFIEEISSESDALMWESLLVACRIHHNVG 740

Query: 541 LDEKDAEKLLELEPKMESNYVFPS--DISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           L E   E LL+++ +  S  V     +I A  GRW D S ++A +   G+    SC+ IE
Sbjct: 741 LAETAVEHLLDVKAQ-SSPAVCEQLMNIYAAAGRWEDVSVIKATMREAGLLAPKSCT-IE 798

Query: 599 VD 600
           V+
Sbjct: 799 VN 800



 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 171/553 (30%), Positives = 292/553 (52%), Gaps = 11/553 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  VF+SM + +VVSWNA+++GYA  G GQ+ + LF  M+    K ++ S  ++L  
Sbjct: 102 IEDANNVFQSMEDKDVVSWNAMISGYALHGRGQEAVDLFYQMQREGLKPNQNSFISILSA 161

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 ++ G+ +H+   + G   D  +S +L++MY KCG  + A KVF  +++ +VV+W
Sbjct: 162 CQTPIVLEFGEQIHSHITKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSW 221

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I+   Q G  +EA  +F  +  S  +PN+    S++ A T   D   G  +HA I +
Sbjct: 222 TAMISGYVQHGDSKEAFVLFQKLIRSGTQPNKVSFASILGACTNPNDLEQGLKLHAYIKQ 281

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G E + LVGNAL+SMY   G ++   +VF+ +   + VSWNA+ + + +    ++  R+
Sbjct: 282 AGLEQEVLVGNALISMYARCGSLANARQVFDNLRSPNRVSWNAMIAGYGE-GFMEEAFRL 340

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  M  KGF+P+  T+  +L  C+  +D+  GK+LH+  ++ + + +  V T+L+ MY K
Sbjct: 341 FRDMQQKGFQPDRFTYASLLAICADRADLNRGKELHSQIVRTAWEADVTVATALISMYAK 400

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G LE+A   F+ +  K+  ++ A I    + G  + A + F++MR + +  +  T  + 
Sbjct: 401 CGSLEEARKVFNQMPEKNAVSWNAFIACCCRHGSEKEAFQVFKQMRRDDVIPDHVTFITL 460

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           LN C+       GR +H    + G L +  V+ AL++MY +CG + DA  VF     RD 
Sbjct: 461 LNSCTSPEDFERGRYIHGKIDQWGMLSNNLVANALISMYGRCGKLADAREVFYRIRRRDL 520

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SWN MI  YV+HG    A + F     EG   D+ TF+ VL A +++  ++ G+K    
Sbjct: 521 GSWNAMIAAYVQHGANGSAFDLFIKYKSEGGKGDKYTFINVLRAIANLEDLDAGRKIHGL 580

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC--SWHGN 538
           ++K  G+   I+    +I +  + G   +  +     +   + + W  +L A   S HG 
Sbjct: 581 VEKA-GLEKDIRILTTLIKMYSKCGSLRDAYSVFKNVQ-EKDVVCWNAMLAAYNHSDHG- 637

Query: 539 IELDEKDAEKLLE 551
                +DA KL +
Sbjct: 638 -----QDALKLFQ 645



 Score =  261 bits (668), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 147/453 (32%), Positives = 243/453 (53%), Gaps = 3/453 (0%)

Query: 85  DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMR 144
           D +L+  L+ MYSKCG  ++A  VF  ++D DVV+W A+I+     G  QEA  +F  M+
Sbjct: 85  DIYLNNMLISMYSKCGSIEDANNVFQSMEDKDVVSWNAMISGYALHGRGQEAVDLFYQMQ 144

Query: 145 ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVS 204
              +KPNQ    S++ A         GE IH+ I K G+ESD  V  AL++MY + G + 
Sbjct: 145 REGLKPNQNSFISILSACQTPIVLEFGEQIHSHITKAGYESDVNVSTALINMYCKCGSLE 204

Query: 205 YGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACS 264
              +VF  +  ++ VSW A+ S +  +    +   +F +++  G +PN  +F  IL AC+
Sbjct: 205 LARKVFNEMRERNVVSWTAMISGYVQHGDSKEAFVLFQKLIRSGTQPNKVSFASILGACT 264

Query: 265 SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA 324
           + +D+  G +LHA+  +  L+   +VG +L+ MY + G L +A   FD+L + +  ++ A
Sbjct: 265 NPNDLEQGLKLHAYIKQAGLEQEVLVGNALISMYARCGSLANARQVFDNLRSPNRVSWNA 324

Query: 325 IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           +I  Y + G  E A + FR M+ +G + + FT AS L  C+  A L  G+ LHS  V+T 
Sbjct: 325 MIAGYGE-GFMEEAFRLFRDMQQKGFQPDRFTYASLLAICADRADLNRGKELHSQIVRTA 383

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
              D+ V+TAL++MYAKCGS+++A  VF     ++  SWN  I    +HG  ++A + F+
Sbjct: 384 WEADVTVATALISMYAKCGSLEEARKVFNQMPEKNAVSWNAFIACCCRHGSEKEAFQVFK 443

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA 504
            M  +  +PD +TF+ +L++C+     E G+     I + +G+         +I + GR 
Sbjct: 444 QMRRDDVIPDHVTFITLLNSCTSPEDFERGRYIHGKIDQ-WGMLSNNLVANALISMYGRC 502

Query: 505 GKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           GK  +        +   +   W  ++ A   HG
Sbjct: 503 GKLADAREVFYRIR-RRDLGSWNAMIAAYVQHG 534



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 121/398 (30%), Positives = 207/398 (52%), Gaps = 12/398 (3%)

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
           G+ +H  +    FE D  + N L+SMY + G +   + VF+++  +D VSWNA+ S +  
Sbjct: 70  GKKVHDHMRSAQFEPDIYLNNMLISMYSKCGSIEDANNVFQSMEDKDVVSWNAMISGYAL 129

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
           +    + + +FYQM  +G KPN  +FI IL AC +   + FG+Q+H+H  K   + +  V
Sbjct: 130 HGRGQEAVDLFYQMQREGLKPNQNSFISILSACQTPIVLEFGEQIHSHITKAGYESDVNV 189

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
            T+L++MY K G LE A   F+ +  +++ ++TA+I+ Y Q G+++ A   F+K+   G 
Sbjct: 190 STALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSKEAFVLFQKLIRSGT 249

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
           + N+ + AS L  C+    L  G  LH+   + G   ++ V  AL++MYA+CGS+ +A  
Sbjct: 250 QPNKVSFASILGACTNPNDLEQGLKLHAYIKQAGLEQEVLVGNALISMYARCGSLANARQ 309

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           VF      +  SWN MI GY   G  E+A   FR M  +G+ PD  T+  +L+ C+    
Sbjct: 310 VFDNLRSPNRVSWNAMIAGY-GEGFMEEAFRLFRDMQQKGFQPDRFTYASLLAICADRAD 368

Query: 471 IEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENL 529
           +  GK+ H   ++  +    T+     +I +  + G   E      +     NA+ W   
Sbjct: 369 LNRGKELHSQIVRTAWEADVTVA--TALISMYAKCGSLEEARKVFNQMP-EKNAVSWNAF 425

Query: 530 LGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           +  C  HG+    EK+A ++ +   +M  + V P  ++
Sbjct: 426 IACCCRHGS----EKEAFQVFK---QMRRDDVIPDHVT 456



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 147/285 (51%), Gaps = 2/285 (0%)

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           +G + N+  +   L+ C     +  GK++H H      + +  +   L+ MY K G +ED
Sbjct: 45  RGVQANLNFYARRLQECVQAKSLAEGKKVHDHMRSAQFEPDIYLNNMLISMYSKCGSIED 104

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A   F S+ +KD+ ++ A+I+ YA  G  + A+  F +M+ EG+K N+ +  S L+ C  
Sbjct: 105 ANNVFQSMEDKDVVSWNAMISGYALHGRGQEAVDLFYQMQREGLKPNQNSFISILSACQT 164

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
              L  G  +HS   K G+  D+ VSTAL+ MY KCGS++ A  VF     R+  SW  M
Sbjct: 165 PIVLEFGEQIHSHITKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAM 224

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           I GYV+HG  ++A   F+ ++  G  P++++F  +L AC++   +E+G K  + IK+  G
Sbjct: 225 ISGYVQHGDSKEAFVLFQKLIRSGTQPNKVSFASILGACTNPNDLEQGLKLHAYIKQA-G 283

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLG 531
           +   +     +I +  R G            + +PN + W  ++ 
Sbjct: 284 LEQEVLVGNALISMYARCGSLANARQVFDNLR-SPNRVSWNAMIA 327


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  347 bits (891), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 192/586 (32%), Positives = 312/586 (53%), Gaps = 49/586 (8%)

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           F++S      +V+HA  I+ GC         L+++Y+K    + A K+F  I   DV +W
Sbjct: 298 FSDSMNYPNSEVLHAKLIKNGCV--GIRGNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSW 355

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRA-TTETGDQRCGESIHAVIC 179
             +I+   + G   +   +F  M++  V PNQF L+ ++++ ++   D R G+ IH  I 
Sbjct: 356 TVLISGFARIGLSADVLGLFTKMQDQGVCPNQFTLSIVLKSCSSNVNDSRIGKGIHGWIL 415

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR------------ 227
           + G + D ++ N+++  Y++     Y  ++F  +A +D+VSWN + S             
Sbjct: 416 RNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVD 475

Query: 228 -FQDYESPDQ------------------GLRIFYQMLLKGFKPNMCTFIVILKACSSLSD 268
            F+     D                    L + Y+M+  G   N  TF + L   SSLS 
Sbjct: 476 LFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSV 535

Query: 269 VGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK----------- 317
           +G GKQ+H   +K  +  +  V  SL+DMY K G +E A V F  L  +           
Sbjct: 536 LGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCD 595

Query: 318 ----DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG 373
               +  +++++++ Y Q G  E ALK F  M    ++ ++FTL S ++ C+    L  G
Sbjct: 596 DAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELG 655

Query: 374 RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKH 433
           R +H    K GH LD+F+ ++++ MY KCGS++DA  +F  +  R+   W  MI G   H
Sbjct: 656 RQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALH 715

Query: 434 GLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKH 493
           G G +A+  F +M++EG  P+E++FV VL+ACSH GL+EEG K+F  ++++YGI P  +H
Sbjct: 716 GQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEH 775

Query: 494 FACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELE 553
           F CM+D+ GRAG+  EI+ FI    ++  + VW + L +C  H NIE+     +KLLELE
Sbjct: 776 FTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRVHKNIEMGIWVCKKLLELE 835

Query: 554 PKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           P     Y+  S I AT+ RW + + +R+L+  +G+KK PS SWI++
Sbjct: 836 PFDAGPYILFSSICATEHRWEEAAKIRSLMQQRGVKKNPSQSWIQL 881



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 122/476 (25%), Positives = 219/476 (46%), Gaps = 60/476 (12%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A ++F+ +P+ +V SW  L++G+A  G    V+ LF  M+D     ++F+LS VLK 
Sbjct: 337 LEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPNQFTLSIVLKS 396

Query: 61  -FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             +N    + G+ +H   +R G  LD  L+ S++D Y KC     A K+F  + + D V+
Sbjct: 397 CSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVS 456

Query: 120 WGAIITCLDQQGCCQEAAKIFN----------------LMRESSVKPNQFVLTSLVRA-- 161
           W  +++   Q G  Q++  +F                 LMR    +    +L  +V A  
Sbjct: 457 WNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGP 516

Query: 162 -------------TTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSR 208
                         +       G+ IH  + K G   D  V N+L+ MY + G +   S 
Sbjct: 517 AFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASV 576

Query: 209 VFEAIAHQ---------------DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
           +F+ +  +               +SVSW+++ S +      +  L+ F  M+    + + 
Sbjct: 577 IFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDK 636

Query: 254 CTFIVILKACSSLSDVGFGKQLHAHT--IKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF 311
            T   ++ AC+S   +  G+Q+H +   I H LD    +G+S++DMY K G L DA + F
Sbjct: 637 FTLTSVVSACASAGVLELGRQVHGYIQKIGHGLD--VFLGSSIIDMYVKCGSLNDAWLIF 694

Query: 312 DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLA 371
           +   ++++  +T++I+  A  G+   A++ F  M  EGI  NE +    L  CS    L 
Sbjct: 695 NQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLE 754

Query: 372 NG----RLLHSI-AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            G    RL+  +  ++ G   + F  T +V +Y + G +++ +     +A+   +S
Sbjct: 755 EGCKYFRLMREVYGIRPGA--EHF--TCMVDLYGRAGRLNEIKEFIHNNAISKLSS 806



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 131/266 (49%), Gaps = 25/266 (9%)

Query: 1   MELAKRVFKSMPE---------------LNVVSWNALLNGYAESGDGQKVMHLFCSMKDM 45
           ME A  +FK +P+               +  VSW+++++GY ++G  +  +  F  M   
Sbjct: 571 MEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICS 630

Query: 46  EKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNA 105
           + +  KF+L++V+   A++G ++ G+ VH    ++G  LD FL  S++DMY KCG  ++A
Sbjct: 631 QVEVDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDA 690

Query: 106 LKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTET 165
             +F + KD +VV W ++I+     G  +EA ++F LM    + PN+     ++ A +  
Sbjct: 691 WLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHA 750

Query: 166 GDQRCGESIHAVICK-YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS---- 220
           G    G     ++ + YG          +V +Y   GR++      +   H +++S    
Sbjct: 751 GLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNE----IKEFIHNNAISKLSS 806

Query: 221 -WNALFSRFQDYESPDQGLRIFYQML 245
            W +  S  + +++ + G+ +  ++L
Sbjct: 807 VWRSFLSSCRVHKNIEMGIWVCKKLL 832


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  347 bits (890), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 194/568 (34%), Positives = 309/568 (54%), Gaps = 37/568 (6%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII-- 124
           +  G+ +H++ I+       + S   + +YSKCG    A K F  I DP+V ++ AII  
Sbjct: 24  LSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPNVFSFNAIIAA 83

Query: 125 --------------------------TCLDQQGCCQEAAK---IFNLMRESSVKPNQFVL 155
                                     T +     C E A    +F+ MRE  +  + F L
Sbjct: 84  YAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDXFTL 143

Query: 156 TSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH 215
           ++++ A  +  D      +H+V    GF+S   V NAL++ Y +NG +    RVF  +  
Sbjct: 144 SAVITACCD--DVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGG 201

Query: 216 -QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ 274
            +D VSWN++   +  ++   + L +F +M+ +G   +M T   +L A + L D+  G Q
Sbjct: 202 IRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQ 261

Query: 275 LHAHTIKHSLDGNHVVGTSLVDMYDK-SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
            H   IK     N  VG+ L+D+Y K  G + D    F+ +   DL  +  +++ Y+Q  
Sbjct: 262 FHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNE 321

Query: 334 E-AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF-V 391
           E  E AL+CFR+M+  G + N+ +    ++ CS +++ + G+ +HS+A+K+    +   V
Sbjct: 322 EFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISV 381

Query: 392 STALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGY 451
             AL+AMY+KCG++ DA  +F   A  +T S N MI GY +HG+  ++L  F+ ML+   
Sbjct: 382 DNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQI 441

Query: 452 VPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIE 511
            P  ITF+ VLSAC+H G +EEG  +F+ +K+ + I P  +H++CMID+LGRAGK +E E
Sbjct: 442 APTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAE 501

Query: 512 NFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQG 571
           N I      P ++ W +LLGAC  HGNIEL  K A ++L+LEP   + YV  S++ A+ G
Sbjct: 502 NLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAG 561

Query: 572 RWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           RW + + VR  +  +G+KK+P CSWIEV
Sbjct: 562 RWEEVATVRKFMRDRGVKKKPGCSWIEV 589



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 136/470 (28%), Positives = 228/470 (48%), Gaps = 16/470 (3%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           +A ++F  +PE ++VS+N L++ YA+ G+    + LF  M++M      F+LS V+    
Sbjct: 92  IAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDXFTLSAVITACC 151

Query: 63  NS-GYIKAGQVVHAMAIRLGCALDKFLSC--SLVDMYSKCGLADNALKVFYRIKD-PDVV 118
           +  G I  GQ +H++A+  G   D ++S   +L+  Y K G  D+A +VFY +    D V
Sbjct: 152 DDVGLI--GQ-LHSVAVSSG--FDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEV 206

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +W ++I    Q     +A  +F  M    +  + F L S++ A T   D   G   H  +
Sbjct: 207 SWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQL 266

Query: 179 CKYGFESDTLVGNALVSMYME-NGRVSYGSRVFEAIAHQDSVSWNALFSRF-QDYESPDQ 236
            K GF  ++ VG+ L+ +Y +  G +S   +VFE I   D V WN + S + Q+ E  + 
Sbjct: 267 IKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLED 326

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGTSLV 295
            L  F QM   G++PN C+F+ ++ ACS+LS    GKQ+H+  +K  +  N + V  +L+
Sbjct: 327 ALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALI 386

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
            MY K G L+DA   FD +A  +  +  ++I  YAQ G    +L  F+ M    I     
Sbjct: 387 AMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSI 446

Query: 356 TLASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
           T  S L+ C+    +  G    + +  K     +    + ++ +  + G + +AE +   
Sbjct: 447 TFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIAR 506

Query: 415 SALRD-TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
                 +  W  ++G    HG  E A++A   +L     P      VVLS
Sbjct: 507 MPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQ--LEPSNAAPYVVLS 554



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 148/344 (43%), Gaps = 41/344 (11%)

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
           F  +LK C +  D+  GK LH+  IK  +  +       + +Y K G L  A  AF  ++
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 316 NKDLFAYTAIITSYAQ-------------------------------AGEAEMALKCFRK 344
           + ++F++ AII +YA+                                GE   AL  F  
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404
           MR  G+  + FTL++ +  C     L     LHS+AV +G    + V+ AL+  Y K G 
Sbjct: 131 MREMGLDMDXFTLSAVITACCDDVGLIGQ--LHSVAVSSGFDSYVSVNNALLTYYGKNGD 188

Query: 405 IDDAEAVFKG-SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           +DDA+ VF G   +RD  SWN MI  Y +H  G KAL  F+ M+  G   D  T   VL+
Sbjct: 189 LDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLT 248

Query: 464 ACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNA 523
           A + +  +  G +    + K  G        + +ID+  + G        + E    P+ 
Sbjct: 249 AFTCLEDLSGGLQFHGQLIKT-GFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDL 307

Query: 524 LVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           ++W  ++   S       +E+  E  LE   +M+     P+D S
Sbjct: 308 VLWNTMVSGYS------QNEEFLEDALECFRQMQGIGYRPNDCS 345



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/229 (20%), Positives = 110/229 (48%), Gaps = 4/229 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDG-QKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           M   ++VF+ + E ++V WN +++GY+++ +  +  +  F  M+ +  + +  S   V+ 
Sbjct: 292 MSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVIS 351

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKF-LSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
             +N      G+ +H++A++     ++  +  +L+ MYSKCG   +A ++F R+ + + V
Sbjct: 352 ACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTV 411

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +  ++I    Q G   E+  +F  M E  + P      S++ A   TG    G +   ++
Sbjct: 412 SLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMM 471

Query: 179 C-KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALF 225
             K+  E +    + ++ +    G++S    +   +  +  S+ W +L 
Sbjct: 472 KEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLL 520


>gi|413932453|gb|AFW67004.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 913

 Score =  347 bits (890), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 196/593 (33%), Positives = 307/593 (51%), Gaps = 7/593 (1%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           +F  MP  NVV+W   ++G   +G  +    +F  M +     + F+ +  L   A +G 
Sbjct: 92  LFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADMLESGVAPNDFACNAALAACAAAGA 151

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +  G+ VH++A+R G A D ++   L+++YS+CG    A +VF R++ PDVV + ++++ 
Sbjct: 152 LGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSLRAAEEVFRRMEAPDVVGYTSLVSA 211

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
           L + G    A  +   M    ++PN+  +TS++ A    G    GE IH  + K      
Sbjct: 212 LCRNGELARAVDVLCQMTRQGLQPNEHTMTSML-AECPRG---IGEQIHGYMLKVMGSQS 267

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
                AL+  Y   G       VFE +  ++ VSW ++          D  LR+F +M+ 
Sbjct: 268 VYASTALIDFYSRYGDFGTAKTVFENLESKNVVSWCSMMQLCIRDGRLDDALRVFSEMIS 327

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           +G +PN   F + L AC S   V  G+Q+H   IK  L  +  V  +L+ MY +SG + +
Sbjct: 328 EGVQPNEFAFSIALSACGS---VCLGRQIHCSAIKRDLMTDIRVSNALLSMYGRSGFVSE 384

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
                  + N DL ++TA I++  Q G +E A+    +M  EG   N++  +S L+ C+ 
Sbjct: 385 LEAVLGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCAD 444

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           +A L  GR LH +A+K G    +    AL+ MY+KCG I  A   F      D  SWN +
Sbjct: 445 LALLHQGRQLHCLALKLGCDFKVCTGNALINMYSKCGRIGSARLAFDVMDTHDVMSWNSL 504

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           I G  +HG    ALE F  M    + PD+ TF+ VL  C+H GL++EG+  F  +   YG
Sbjct: 505 IHGLAQHGDANLALETFSEMCSSDWRPDDSTFLSVLVGCNHAGLVKEGETFFRQMTDRYG 564

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDA 546
           +TPT  H+ACMID+LGR G+F E    I      P+ L+W+ LL +C  H N+++ +  A
Sbjct: 565 LTPTPSHYACMIDMLGRNGRFAEALRMIENMPFEPDVLIWKTLLASCKLHRNLDIGKLAA 624

Query: 547 EKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +KL+EL  +  ++YV  S++ A    W D   VR  +   G+KK+   SWIEV
Sbjct: 625 DKLMELSERDSASYVLMSNLYAMHEEWRDAERVRRRMDEIGVKKDAGWSWIEV 677



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 124/458 (27%), Positives = 217/458 (47%), Gaps = 11/458 (2%)

Query: 85  DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMR 144
           D  L C  +D   K G   +AL +F R+   +VVAW   I+   + G  + AA +F  M 
Sbjct: 69  DVVLDCKRLDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADML 128

Query: 145 ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVS 204
           ES V PN F   + + A    G    GE +H++  + GF +D  +G+ L+ +Y   G + 
Sbjct: 129 ESGVAPNDFACNAALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSLR 188

Query: 205 YGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACS 264
               VF  +   D V + +L S         + + +  QM  +G +PN  T   +L  C 
Sbjct: 189 AAEEVFRRMEAPDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAECP 248

Query: 265 SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA 324
                G G+Q+H + +K     +    T+L+D Y + G    A   F++L +K++ ++ +
Sbjct: 249 R----GIGEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVVSWCS 304

Query: 325 IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           ++    + G  + AL+ F +M  EG++ NEF  +  L+ C  V     GR +H  A+K  
Sbjct: 305 MMQLCIRDGRLDDALRVFSEMISEGVQPNEFAFSIALSACGSVCL---GRQIHCSAIKRD 361

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
            + D+ VS AL++MY + G + + EAV       D  SW   I    ++G  EKA+    
Sbjct: 362 LMTDIRVSNALLSMYGRSGFVSELEAVLGKIENPDLVSWTAAISANFQNGFSEKAVALLL 421

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGR 503
            M  EG+ P++  F   LS+C+ + L+ +G++ H  ++K   G    +     +I++  +
Sbjct: 422 QMHSEGFTPNDYAFSSGLSSCADLALLHQGRQLHCLALK--LGCDFKVCTGNALINMYSK 479

Query: 504 AGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
            G+         +   T + + W +L+   + HG+  L
Sbjct: 480 CGRIGSAR-LAFDVMDTHDVMSWNSLIHGLAQHGDANL 516



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 121/476 (25%), Positives = 220/476 (46%), Gaps = 42/476 (8%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A+ VF+ M   +VV + +L++    +G+  + + + C M     + ++ +++++L  
Sbjct: 187 LRAAEEVFRRMEAPDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAE 246

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                    G+ +H   +++  +   + S +L+D YS+ G    A  VF  ++  +VV+W
Sbjct: 247 CPRG----IGEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVVSW 302

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +++    + G   +A ++F+ M    V+PN+F  +    A +  G    G  IH    K
Sbjct: 303 CSMMQLCIRDGRLDDALRVFSEMISEGVQPNEFAFSI---ALSACGSVCLGRQIHCSAIK 359

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS-RFQDYESPDQGLR 239
               +D  V NAL+SMY  +G VS    V   I + D VSW A  S  FQ+  S ++ + 
Sbjct: 360 RDLMTDIRVSNALLSMYGRSGFVSELEAVLGKIENPDLVSWTAAISANFQNGFS-EKAVA 418

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +  QM  +GF PN   F   L +C+ L+ +  G+QLH   +K   D     G +L++MY 
Sbjct: 419 LLLQMHSEGFTPNDYAFSSGLSSCADLALLHQGRQLHCLALKLGCDFKVCTGNALINMYS 478

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G +  A +AFD +   D+ ++ ++I   AQ G+A +AL+ F +M     + ++ T  S
Sbjct: 479 KCGRIGSARLAFDVMDTHDVMSWNSLIHGLAQHGDANLALETFSEMCSSDWRPDDSTFLS 538

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L GC+    +  G            + D +  T   + YA C                 
Sbjct: 539 VLVGCNHAGLVKEGETFFR------QMTDRYGLTPTPSHYA-C----------------- 574

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
                 MI    ++G   +  EA RM+ +  + PD + +  +L++C     ++ GK
Sbjct: 575 ------MIDMLGRNG---RFAEALRMIENMPFEPDVLIWKTLLASCKLHRNLDIGK 621


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 194/568 (34%), Positives = 309/568 (54%), Gaps = 37/568 (6%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII-- 124
           +  G+ +H++ I+       + S   + +YSKCG    A K F  I DP+V ++ AII  
Sbjct: 24  LSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPNVFSFNAIIAA 83

Query: 125 --------------------------TCLDQQGCCQEAAK---IFNLMRESSVKPNQFVL 155
                                     T +     C E A    +F+ MRE  +  + F L
Sbjct: 84  YAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTL 143

Query: 156 TSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH 215
           ++++ A  +  D      +H+V    GF+S   V NAL++ Y +NG +    RVF  +  
Sbjct: 144 SAVITACCD--DVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGG 201

Query: 216 -QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ 274
            +D VSWN++   +  ++   + L +F +M+ +G   +M T   +L A + L D+  G Q
Sbjct: 202 IRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQ 261

Query: 275 LHAHTIKHSLDGNHVVGTSLVDMYDK-SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
            H   IK     N  VG+ L+D+Y K  G + D    F+ +   DL  +  +++ Y+Q  
Sbjct: 262 FHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNE 321

Query: 334 E-AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF-V 391
           E  E AL+CFR+M+  G + N+ +    ++ CS +++ + G+ +HS+A+K+    +   V
Sbjct: 322 EFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISV 381

Query: 392 STALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGY 451
             AL+AMY+KCG++ DA  +F   A  +T S N MI GY +HG+  ++L  F+ ML+   
Sbjct: 382 DNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQI 441

Query: 452 VPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIE 511
            P  ITF+ VLSAC+H G +EEG  +F+ +K+ + I P  +H++CMID+LGRAGK +E E
Sbjct: 442 APTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAE 501

Query: 512 NFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQG 571
           N I      P ++ W +LLGAC  HGNIEL  K A ++L+LEP   + YV  S++ A+ G
Sbjct: 502 NLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAG 561

Query: 572 RWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           RW + + VR  +  +G+KK+P CSWIEV
Sbjct: 562 RWEEVATVRKFMRDRGVKKKPGCSWIEV 589



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 136/470 (28%), Positives = 228/470 (48%), Gaps = 16/470 (3%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           +A ++F  +PE ++VS+N L++ YA+ G+    + LF  M++M      F+LS V+    
Sbjct: 92  IAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITACC 151

Query: 63  NS-GYIKAGQVVHAMAIRLGCALDKFLSC--SLVDMYSKCGLADNALKVFYRIKD-PDVV 118
           +  G I  GQ +H++A+  G   D ++S   +L+  Y K G  D+A +VFY +    D V
Sbjct: 152 DDVGLI--GQ-LHSVAVSSG--FDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEV 206

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +W ++I    Q     +A  +F  M    +  + F L S++ A T   D   G   H  +
Sbjct: 207 SWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQL 266

Query: 179 CKYGFESDTLVGNALVSMYME-NGRVSYGSRVFEAIAHQDSVSWNALFSRF-QDYESPDQ 236
            K GF  ++ VG+ L+ +Y +  G +S   +VFE I   D V WN + S + Q+ E  + 
Sbjct: 267 IKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLED 326

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGTSLV 295
            L  F QM   G++PN C+F+ ++ ACS+LS    GKQ+H+  +K  +  N + V  +L+
Sbjct: 327 ALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALI 386

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
            MY K G L+DA   FD +A  +  +  ++I  YAQ G    +L  F+ M    I     
Sbjct: 387 AMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSI 446

Query: 356 TLASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
           T  S L+ C+    +  G    + +  K     +    + ++ +  + G + +AE +   
Sbjct: 447 TFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIAR 506

Query: 415 SALRD-TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
                 +  W  ++G    HG  E A++A   +L     P      VVLS
Sbjct: 507 MPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQ--LEPSNAAPYVVLS 554



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 161/353 (45%), Gaps = 36/353 (10%)

Query: 158 LVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFE------ 211
           L++      D   G+S+H++  K      T   N  + +Y + GR+++  + F+      
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 212 -----------------AIAHQ--------DSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
                             IAHQ        D VS+N L S + D       L +F  M  
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMRE 133

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
            G   +  T   ++ AC    DVG   QLH+  +    D    V  +L+  Y K+G L+D
Sbjct: 134 MGLDMDGFTLSAVITACC--DDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDD 191

Query: 307 AGVAFDSLAN-KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
           A   F  +   +D  ++ ++I +Y Q  E   AL  F++M   G+  + FTLAS L   +
Sbjct: 192 AKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFT 251

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC-GSIDDAEAVFKGSALRDTASWN 424
            +  L+ G   H   +KTG   +  V + L+ +Y+KC G + D   VF+     D   WN
Sbjct: 252 CLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWN 311

Query: 425 MMIGGYVKH-GLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            M+ GY ++    E ALE FR M   GY P++ +FV V+SACS++    +GK+
Sbjct: 312 TMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQ 364



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 148/344 (43%), Gaps = 41/344 (11%)

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
           F  +LK C +  D+  GK LH+  IK  +  +       + +Y K G L  A  AF  ++
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 316 NKDLFAYTAIITSYAQ-------------------------------AGEAEMALKCFRK 344
           + ++F++ AII +YA+                                GE   AL  F  
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404
           MR  G+  + FTL++ +  C     L     LHS+AV +G    + V+ AL+  Y K G 
Sbjct: 131 MREMGLDMDGFTLSAVITACCDDVGLIGQ--LHSVAVSSGFDSYVSVNNALLTYYGKNGD 188

Query: 405 IDDAEAVFKG-SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           +DDA+ VF G   +RD  SWN MI  Y +H  G KAL  F+ M+  G   D  T   VL+
Sbjct: 189 LDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLT 248

Query: 464 ACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNA 523
           A + +  +  G +    + K  G        + +ID+  + G        + E    P+ 
Sbjct: 249 AFTCLEDLSGGLQFHGQLIKT-GFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDL 307

Query: 524 LVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           ++W  ++   S       +E+  E  LE   +M+     P+D S
Sbjct: 308 VLWNTMVSGYS------QNEEFLEDALECFRQMQGIGYRPNDCS 345



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/264 (20%), Positives = 125/264 (47%), Gaps = 6/264 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDG-QKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           M   ++VF+ + E ++V WN +++GY+++ +  +  +  F  M+ +  + +  S   V+ 
Sbjct: 292 MSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVIS 351

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKF-LSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
             +N      G+ +H++A++     ++  +  +L+ MYSKCG   +A ++F R+ + + V
Sbjct: 352 ACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTV 411

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +  ++I    Q G   E+  +F  M E  + P      S++ A   TG    G +   ++
Sbjct: 412 SLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMM 471

Query: 179 C-KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALFSRFQDYESPDQ 236
             K+  E +    + ++ +    G++S    +   +  +  S+ W +L    + + + + 
Sbjct: 472 KEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIEL 531

Query: 237 GLRIFYQMLLKGFKPNMCTFIVIL 260
            ++   Q+L    +P+     V+L
Sbjct: 532 AVKAANQVL--QLEPSNAAPYVVL 553


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 197/604 (32%), Positives = 329/604 (54%), Gaps = 17/604 (2%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           VF ++   N VSW  ++  +A +G  ++ +  +  M  +E      ++  V  G  +S  
Sbjct: 14  VFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMV-LEGLRPDGAMFVVAIGVCSSSK 72

Query: 67  -IKAGQVVHAMAI--RLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            +K GQ++HAM +  RL    D  L  +L+ MY++C   + A K F  +    +V W A+
Sbjct: 73  DLKQGQLLHAMILETRL-LEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNAL 131

Query: 124 ITCLDQQGCCQEAAKIFNLMRESS---VKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
           I    + G  + A KI+  M   S   +KP+    +S + A T  GD   G  I A    
Sbjct: 132 IAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTVA 191

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G+ SD++V NAL++MY + G +    +VF+ + ++D ++WN + S +    +  Q L +
Sbjct: 192 SGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALEL 251

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M     KPN+ TFI +L AC++L D+  G+ +H    +   + + V+G  L++MY K
Sbjct: 252 FQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTK 311

Query: 301 -SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
            S  LE+A   F+ +  +D+  +  +I +Y Q G+A+ AL  F++M+LE +  NE TL++
Sbjct: 312 CSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSN 371

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L+ C+ +     G+ +H++        D+ +  +L+ MY +CGS+DD   VF  +A+RD
Sbjct: 372 VLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVF--AAIRD 429

Query: 420 TA--SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
            +  SW+ +I  Y +HG     LE F  +L EG   D++T V  LSACSH G+++EG + 
Sbjct: 430 KSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQT 489

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F S+   +G+ P  +HF CM+D+L RAG+    EN I +    P+A+ W +LL  C  H 
Sbjct: 490 FLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHN 549

Query: 538 NIELDEKDAEKLLELEPKME-SNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSW 596
           + +   + A+KL ELE + E S     S++ A  GRW+D   VR   + +  +K P CS+
Sbjct: 550 DTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDD---VRKTRNRRAARKNPGCSY 606

Query: 597 IEVD 600
           IE++
Sbjct: 607 IEIN 610



 Score =  224 bits (572), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 122/386 (31%), Positives = 204/386 (52%), Gaps = 5/386 (1%)

Query: 95  MYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFV 154
           MY KCG   +AL VF+ I+ P+ V+W  I+    + G  +EA   +  M    ++P+  +
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 155 LTSLVRATTETGDQRCGESIHAVICKYG-FESDTLVGNALVSMYMENGRVSYGSRVFEAI 213
               +   + + D + G+ +HA+I +    E D ++G AL++MY     +    + F+ +
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 214 AHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK---GFKPNMCTFIVILKACSSLSDVG 270
             +  V+WNAL + +         L+I+  M+ K   G KP+  TF   L AC+ + D+ 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 271 FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
            G+++ A T+      + +V  +L++MY K G LE A   FD L N+D+ A+  +I+ YA
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
           + G A  AL+ F++M     K N  T    L  C+ +  L  GR +H    + G+  D+ 
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLV 300

Query: 391 VSTALVAMYAKC-GSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDE 449
           +   L+ MY KC  S+++A  VF+    RD  +WN++I  YV++G  + AL+ F+ M  E
Sbjct: 301 IGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLE 360

Query: 450 GYVPDEITFVVVLSACSHMGLIEEGK 475
              P+EIT   VLSAC+ +G   +GK
Sbjct: 361 NVAPNEITLSNVLSACAVLGAKRQGK 386



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 142/475 (29%), Positives = 238/475 (50%), Gaps = 19/475 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM--KDME-KKFSKFSLSTV 57
           +ELA++ F  M +  +V+WNAL+ GY+ +GD +  + ++  M  K  E  K    + S+ 
Sbjct: 110 LELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSA 169

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
           L      G I  G+ + A  +  G A D  +  +L++MYSKCG  ++A KVF R+K+ DV
Sbjct: 170 LYACTVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDV 229

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           +AW  +I+   +QG   +A ++F  M  +  KPN      L+ A T   D   G +IH  
Sbjct: 230 IAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRK 289

Query: 178 ICKYGFESDTLVGNALVSMYME-NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
           + + G+ESD ++GN L++MY + +  +    +VFE +  +D ++WN L   +  Y     
Sbjct: 290 VREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKD 349

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            L IF QM L+   PN  T   +L AC+ L     GK +HA         + V+  SL++
Sbjct: 350 ALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMN 409

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           MY++ G L+D    F ++ +K L +++ +I +YAQ G +   L+ F ++  EG+ +++ T
Sbjct: 410 MYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVT 469

Query: 357 LASCLNGCSPVATLANGRLL-------HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           + S L+ CS    L  G          H +A    H L M      V + ++ G ++ AE
Sbjct: 470 MVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCM------VDLLSRAGRLEAAE 523

Query: 410 AVFKGSA-LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
            +      L D  +W  ++ G   H   ++A      +  E    DE + V +LS
Sbjct: 524 NLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLF-ELESEDEHSTVTLLS 577



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 114/376 (30%), Positives = 196/376 (52%), Gaps = 12/376 (3%)

Query: 196 MYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCT 255
           MY + G V+    VF AI H +SVSW  + + F       + L  + +M+L+G +P+   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHS-LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
           F+V +  CSS  D+  G+ LHA  ++   L+ + ++GT+L+ MY +   LE A   FD +
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKM---RLEGIKSNEFTLASCLNGCSPVATLA 371
             K L  + A+I  Y++ G+   ALK ++ M     EG+K +  T +S L  C+ V  ++
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 372 NGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV 431
            GR + +  V +G+  D  V  AL+ MY+KCGS++ A  VF     RD  +WN MI GY 
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI 491
           K G   +ALE F+ M      P+ +TF+ +L+AC+++  +E+G+     +++  G    +
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVRE-DGYESDL 299

Query: 492 KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551
                ++++  +     E    + E   T + + W  L+ A   +G      KDA   L+
Sbjct: 300 VIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQ----AKDA---LD 352

Query: 552 LEPKMESNYVFPSDIS 567
           +  +M+   V P++I+
Sbjct: 353 IFKQMQLENVAPNEIT 368


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 194/646 (30%), Positives = 327/646 (50%), Gaps = 60/646 (9%)

Query: 15   NVVSWNALLNGYAES-GDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVV 73
            N + WN+ +  +  S G    V+ +F  +      F     S  LK       I  G  +
Sbjct: 637  NYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEI 696

Query: 74   HAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCC 133
            H   I+ G  LD +L C+L++ Y +C   + A +VF+ + +P+ + W   I    Q    
Sbjct: 697  HGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKL 756

Query: 134  QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNAL 193
            Q+  ++F  M+ S +K     +  +++A  + G     + IH  + ++G +SD  + N L
Sbjct: 757  QKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPL 816

Query: 194  VSMYMENGRVSYGSRVFEAIAHQDSVSWNAL-------------FSRFQDYESPD----- 235
            +SMY +NG++    RVF+++ ++++ SWN++             +S F + ES D     
Sbjct: 817  ISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDI 876

Query: 236  -----------------QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAH 278
                             + L I  +M  +GFKPN  +   +L+A S L  +  GK+ H +
Sbjct: 877  VTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGY 936

Query: 279  TIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMA 338
             +++  D +  VGTSL+DMY K+  L  A   FD++ N+++FA+ ++++ Y+  G  E A
Sbjct: 937  VLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDA 996

Query: 339  LKCFRKMRLEGIKS------------------------NEFTLASCLNGCSPVATLANGR 374
            L+   +M  EGIK                         N  ++   L  C+ ++ L  G+
Sbjct: 997  LRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAFMPNSASITCLLRACASLSLLQKGK 1056

Query: 375  LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
             +H ++++ G + D+FV+TAL+ MY+K  S+ +A  VF+    +  ASWN MI G+   G
Sbjct: 1057 EIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFG 1116

Query: 435  LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHF 494
            LG++A+  F  M   G  PD ITF  +LSAC + GLI EG K+F S+   Y I P ++H+
Sbjct: 1117 LGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHY 1176

Query: 495  ACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEP 554
             CM+D+LGRAG   E  + I    L P+A +W  LLG+C  H N+   E  A+ L +LEP
Sbjct: 1177 CCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLXFAETAAKNLFKLEP 1236

Query: 555  KMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
               +NY+   ++ +   RW D   +R L+ + G++     SWI+++
Sbjct: 1237 NNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQIN 1282



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 118/489 (24%), Positives = 213/489 (43%), Gaps = 61/489 (12%)

Query: 1    MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
            +E A +VF  MP    + WN  +    +S   QK + LF  M+    K    ++  VL+ 
Sbjct: 725  LEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQA 784

Query: 61   FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSK---------------------- 98
                G + A + +H    R G   D  L   L+ MYSK                      
Sbjct: 785  CGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSW 844

Query: 99   ---------CGLADNALKVFYRIKD----PDVVAWGAIITCLDQQGCCQEAAKIFNLMRE 145
                      G  ++A  +FY ++     PD+V W  +++     G  +E   I   M+ 
Sbjct: 845  NSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQG 904

Query: 146  SSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSY 205
               KPN   +TS+++A +E G    G+  H  + + GF+ D  VG +L+ MY++N  +  
Sbjct: 905  EGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXS 964

Query: 206  GSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTF--------- 256
               VF+ + +++  +WN+L S +      +  LR+  QM  +G KP++ T+         
Sbjct: 965  AQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAM 1024

Query: 257  ---------------IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
                             +L+AC+SLS +  GK++H  +I++    +  V T+L+DMY KS
Sbjct: 1025 WGCARKAFMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKS 1084

Query: 302  GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
              L++A   F  + NK L ++  +I  +A  G  + A+  F +M+  G+  +  T  + L
Sbjct: 1085 SSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALL 1144

Query: 362  NGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
            + C     +  G +   S+      +  +     +V +  + G +D+A  +     L+  
Sbjct: 1145 SACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPD 1204

Query: 421  AS-WNMMIG 428
            A+ W  ++G
Sbjct: 1205 ATIWGALLG 1213


>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 670

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 186/603 (30%), Positives = 322/603 (53%), Gaps = 5/603 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK- 59
           M  A++VF  M +   + WN ++ GY         + LF +M+        ++++ V + 
Sbjct: 69  MPYARKVFDRMAQPTAIVWNCMIRGYNSCHAPMDALELFRAMRRSGVSPDNYTMAAVAQS 128

Query: 60  --GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
              FA+      G  VHA+  R+G A D F+   L++ Y      ++A KVF  + + DV
Sbjct: 129 SAAFASWKGRATGDAVHALVQRIGFASDLFVMSGLINFYGASKSVEDARKVFEEMHERDV 188

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           V+W  +I+   Q G      +  + M+    KPN+  + SL+ A  +      G  ++A 
Sbjct: 189 VSWTLMISAFAQCGQWDNVLRSLDEMQSEGTKPNKITIISLLSACGQVRAVDKGLWVYAR 248

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
           + +YG E+D  + NAL+ MY++ G +S   + F+ +  +++ SWN L   F       + 
Sbjct: 249 VDEYGIEADVDIRNALIGMYVKCGCMSDAWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEA 308

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           L +F +ML  G  P++ T + +L   + L D+  G+ LH +   H +  + ++  SL++M
Sbjct: 309 LTMFEEMLSDGVIPDVITLVSVLSTYAQLGDLQQGRYLHNYIKDHEIHCDIILQNSLINM 368

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K G +  A + F+++A +D+ ++TA++  Y +  +   A   F  M++  + ++E  L
Sbjct: 369 YAKCGDMAAAEIIFENMARRDIVSWTAMVCGYVKGLQFRTAFNLFDDMKVRDVMASEMAL 428

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
            S L+ CS +  L  GR +HS   +     DM++ +ALV MYAKCG ID A  +F     
Sbjct: 429 VSLLSACSQLGALDKGREIHSYIKEKSVRTDMWLESALVDMYAKCGCIDAAAEIFSRMRH 488

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLD-EGYVPDEITFVVVLSACSHMGLIEEGKK 476
           + T +WN MIGG    G G++A+  F  +L      PD IT  VVL AC+H+G+++EG  
Sbjct: 489 KQTLAWNAMIGGLASQGQGKEAVALFEQLLKLRDPKPDAITLKVVLCACTHVGMVDEGLH 548

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
           +F+ +  + GI P  +H+ C++D+LGRAG   E  NFI +  + PN ++W +LL AC  H
Sbjct: 549 YFNLMLTL-GIVPDNEHYGCIVDLLGRAGLLDEAYNFIQKMPIQPNPVIWGSLLAACRVH 607

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSW 596
             +EL +   + +++L P     +V  S++ A +G+W+D   VR ++ S+ ++K P  S 
Sbjct: 608 HRMELGKIIGQHIIDLAPNDVGAHVLISNLHAEEGQWDDVEQVRGMMGSRRVEKSPGHSS 667

Query: 597 IEV 599
           I+V
Sbjct: 668 IQV 670


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 191/597 (31%), Positives = 326/597 (54%), Gaps = 2/597 (0%)

Query: 4   AKRVFKSMPELN-VVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           A+++F  M E N VVSWN++++ Y+ +G   + + LF  M+      + ++L   L+   
Sbjct: 64  ARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACE 123

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           +S + K G  +HA  ++    LD +++ +LV M+ + G    A ++F  + + D + W +
Sbjct: 124 DSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNS 183

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I    Q G   EA + F  ++++++KP++  L S++ A+   G    G+ IHA   K  
Sbjct: 184 MIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNW 243

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            +S+  +GN L+ MY +   V+Y   VF+ + ++D +SW  + + +       + L++  
Sbjct: 244 LDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLR 303

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           ++  KG   +       L ACS L  +   K++H +T+K  L  + ++   ++D+Y   G
Sbjct: 304 KVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLS-DLMMQNMIIDVYADCG 362

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            +  A   F+S+  KD+ ++T++I+ Y   G A  AL  F  M+   ++ +  TL S L+
Sbjct: 363 NINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILS 422

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
             + ++ L  G+ +H    + G +L+     +LV MYA CGS+++A  VF  +  +    
Sbjct: 423 AAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVL 482

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           W  MI  Y  HG G+ A+E F +M D+  +PD ITF+ +L ACSH GLI EGK+   ++K
Sbjct: 483 WTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRLLETMK 542

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
             Y + P  +H+AC++D+LGRA    E  +F+   ++ P A VW   LGAC  H N +L 
Sbjct: 543 CKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCAFLGACRIHSNKKLG 602

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           E  A+KLL+L+P    +YV  S++ A  GRW D   VR  +   G+KK P CSWIEV
Sbjct: 603 EIAAQKLLDLDPDSPGSYVLISNVFAASGRWKDVEEVRMRMKGGGLKKNPGCSWIEV 659



 Score =  254 bits (649), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 178/589 (30%), Positives = 297/589 (50%), Gaps = 44/589 (7%)

Query: 42  MKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGL 101
           M+ +   F  F+   VLK       I  G  +H + I+ G     F++ SLV MY+KC  
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 102 ADNALKVFYRIKDP-DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVR 160
              A K+F R+ +  DVV+W +II+     G C EA  +F  M+++ V  N + L + ++
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120

Query: 161 ATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS 220
           A  ++  ++ G  IHA I K     D  V NALV+M++  G++SY +R+F+ +  +D+++
Sbjct: 121 ACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNIT 180

Query: 221 WNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTI 280
           WN++ + F      ++ L+ F  +     KP+  + I IL A   L  +  GK++HA+ +
Sbjct: 181 WNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAM 240

Query: 281 KHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALK 340
           K+ LD N  +G +L+DMY K  C+  AG+ FD + NKDL ++T +I +YAQ      ALK
Sbjct: 241 KNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALK 300

Query: 341 CFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYA 400
             RK++ +G+  +   + S L  CS +  L++ + +H   +K G L D+ +   ++ +YA
Sbjct: 301 LLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRG-LSDLMMQNMIIDVYA 359

Query: 401 KCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVV 460
            CG+I+ A  +F+    +D  SW  MI  YV +GL  +AL  F +M +    PD IT V 
Sbjct: 360 DCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVS 419

Query: 461 VLSACSHMGLIEEGKK---------------HFSSIKKIYGITPTI----KHFAC----- 496
           +LSA + +  + +GK+                 +S+  +Y    ++    K F C     
Sbjct: 420 ILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKS 479

Query: 497 ------MIDILGRAGK---FTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAE 547
                 MI+  G  G+     E+ + + + KL P+ + +  LL ACS  G I   ++  E
Sbjct: 480 LVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRLLE 539

Query: 548 KL---LELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPS 593
            +    +LEP  E +Y    D+    GR N        + S  I  EP+
Sbjct: 540 TMKCKYQLEPWPE-HYACLVDL---LGRANHLEEAYHFVKSMQI--EPT 582



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 121/450 (26%), Positives = 220/450 (48%), Gaps = 14/450 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A R+F  + E + ++WN+++ G+ ++G   + +  FC ++D   K  + SL ++L  
Sbjct: 163 MSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAA 222

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
               GY+  G+ +HA A++     +  +  +L+DMYSKC     A  VF ++ + D+++W
Sbjct: 223 SGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISW 282

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I    Q  C  EA K+   ++   +  +  ++ S + A +        + +H    K
Sbjct: 283 TTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLK 342

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G  SD ++ N ++ +Y + G ++Y +R+FE+I  +D VSW ++ S +      ++ L +
Sbjct: 343 RGL-SDLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGV 401

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS--LDGNHVVGTSLVDMY 298
           FY M     +P+  T + IL A +SLS +  GK++H    +    L+G+ V   SLVDMY
Sbjct: 402 FYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTV--NSLVDMY 459

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
              G LE+A   F    +K L  +T +I +Y   G  + A++ F  M  + +  +  T  
Sbjct: 460 ACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFL 519

Query: 359 SCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVS--TALVAMYAKCGSIDDAEAVFKGS 415
           + L  CS    +  G RLL ++  K  + L+ +      LV +  +   +++A    K  
Sbjct: 520 ALLYACSHSGLINEGKRLLETMKCK--YQLEPWPEHYACLVDLLGRANHLEEAYHFVKSM 577

Query: 416 ALRDTAS-WNMMIGGYVKHG---LGEKALE 441
            +  TA  W   +G    H    LGE A +
Sbjct: 578 QIEPTAEVWCAFLGACRIHSNKKLGEIAAQ 607


>gi|357468471|ref|XP_003604520.1| Coatomer subunit beta'-2 [Medicago truncatula]
 gi|355505575|gb|AES86717.1| Coatomer subunit beta'-2 [Medicago truncatula]
          Length = 1033

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 187/595 (31%), Positives = 314/595 (52%), Gaps = 1/595 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLKGFA 62
           A+ +F  M   + +SW  L+ GY  + +  + + LF +M  D   +  +F +S  LK  A
Sbjct: 103 ARDMFNKMSHRDEISWTNLIAGYVNAANSNEALILFSNMWVDSGLQKDQFVVSVALKACA 162

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
               +  G+++H  +++ G     F+S +LVDMY K G  +    VF  +   +VV+W A
Sbjct: 163 LGMNVYFGELLHGFSVKSGLINSVFVSSALVDMYMKVGKTEQGCSVFENMTTRNVVSWTA 222

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I  L   GC  +    F+ M  S V  +       ++A+ E+G    G++IHA   K G
Sbjct: 223 VIVGLVHAGCSLDGLSYFSEMWRSKVGYDSHTFAVALKASAESGLLHYGKAIHAQTIKQG 282

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F     V N L +MY +  +  Y  R+F  ++  D VSW  L   +      ++ L  F 
Sbjct: 283 FNETAYVVNTLGTMYSKCRKPDYVMRLFGKMSTPDVVSWTNLIMTYVQMGDEERALDAFK 342

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M      PN  TF  ++ AC++L+   +G+Q+H H ++  L     V  S++ +Y K G
Sbjct: 343 RMRKSDVSPNEYTFASVISACANLAITKWGEQIHGHALRLGLVDALSVSNSIITLYSKCG 402

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            L++A + FD +  KD+ +++ II+ Y Q   A+ A      M  EG K NEF LAS L+
Sbjct: 403 LLQEASLVFDGMTRKDIISWSTIISVYCQGSHAKEAFNYLSWMSREGPKPNEFALASVLS 462

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C  +A L  G+ +H+ A+  G   +  V +AL++MY++ G++ +A  +F      D  S
Sbjct: 463 VCGSMALLEPGKQVHAYALCIGLDHETMVHSALISMYSRSGNLQEASKIFDSIKNNDIVS 522

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           W  MI GY +HG  ++A+  F  +   G +PD +TF+ +L+AC+H GL++ G  ++  + 
Sbjct: 523 WTAMINGYAEHGYSQEAISLFENISSVGLMPDYVTFIGILTACNHAGLVDLGFYYYKLMT 582

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
             Y I P+ +H+ C+ID+L RAG+ +E E+ +       + +VW  LL AC  HG+++  
Sbjct: 583 NEYQIAPSKEHYGCIIDLLCRAGRLSEAEHMVRNMPFPCDDVVWSTLLRACRDHGDLDRA 642

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
              AE++L L P     ++  ++I +  GR  + + VR L+ S+G+ KEP  SWI
Sbjct: 643 IWAAEQMLRLHPNSAGAHITLANIYSASGRREEAAHVRKLMKSKGVIKEPGWSWI 697



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 145/287 (50%), Gaps = 1/287 (0%)

Query: 191 NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL-KGF 249
           N+ +   M+ G++     +F  ++H+D +SW  L + + +  + ++ L +F  M +  G 
Sbjct: 88  NSQLKQLMKLGKICEARDMFNKMSHRDEISWTNLIAGYVNAANSNEALILFSNMWVDSGL 147

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
           + +     V LKAC+   +V FG+ LH  ++K  L  +  V ++LVDMY K G  E    
Sbjct: 148 QKDQFVVSVALKACALGMNVYFGELLHGFSVKSGLINSVFVSSALVDMYMKVGKTEQGCS 207

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369
            F+++  +++ ++TA+I     AG +   L  F +M    +  +  T A  L   +    
Sbjct: 208 VFENMTTRNVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSKVGYDSHTFAVALKASAESGL 267

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           L  G+ +H+  +K G     +V   L  MY+KC   D    +F   +  D  SW  +I  
Sbjct: 268 LHYGKAIHAQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMRLFGKMSTPDVVSWTNLIMT 327

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
           YV+ G  E+AL+AF+ M      P+E TF  V+SAC+++ + + G++
Sbjct: 328 YVQMGDEERALDAFKRMRKSDVSPNEYTFASVISACANLAITKWGEQ 374



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 114/254 (44%), Gaps = 4/254 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  VF  M   +++SW+ +++ Y +    ++  +    M     K ++F+L++VL  
Sbjct: 404 LQEASLVFDGMTRKDIISWSTIISVYCQGSHAKEAFNYLSWMSREGPKPNEFALASVLSV 463

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +   ++ G+ VHA A+ +G   +  +  +L+ MYS+ G    A K+F  IK+ D+V+W
Sbjct: 464 CGSMALLEPGKQVHAYALCIGLDHETMVHSALISMYSRSGNLQEASKIFDSIKNNDIVSW 523

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC- 179
            A+I    + G  QEA  +F  +    + P+      ++ A    G    G   + ++  
Sbjct: 524 TAMINGYAEHGYSQEAISLFENISSVGLMPDYVTFIGILTACNHAGLVDLGFYYYKLMTN 583

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-DSVSWNALFSRFQDYESPDQGL 238
           +Y           ++ +    GR+S    +   +    D V W+ L    +D+   D+ +
Sbjct: 584 EYQIAPSKEHYGCIIDLLCRAGRLSEAEHMVRNMPFPCDDVVWSTLLRACRDHGDLDRAI 643

Query: 239 RIFYQMLLKGFKPN 252
               QML     PN
Sbjct: 644 WAAEQML--RLHPN 655



 Score = 43.5 bits (101), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 5/128 (3%)

Query: 401 KCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF-RMMLDEGYVPDEITFV 459
           K G I +A  +F   + RD  SW  +I GYV      +AL  F  M +D G   D+    
Sbjct: 96  KLGKICEARDMFNKMSHRDEISWTNLIAGYVNAANSNEALILFSNMWVDSGLQKDQFVVS 155

Query: 460 VVLSACS-HMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK 518
           V L AC+  M +      H  S+K   G+  ++   + ++D+  + GK TE    + E  
Sbjct: 156 VALKACALGMNVYFGELLHGFSVKS--GLINSVFVSSALVDMYMKVGK-TEQGCSVFENM 212

Query: 519 LTPNALVW 526
            T N + W
Sbjct: 213 TTRNVVSW 220


>gi|224112156|ref|XP_002316102.1| predicted protein [Populus trichocarpa]
 gi|222865142|gb|EEF02273.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 193/601 (32%), Positives = 315/601 (52%), Gaps = 3/601 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++LA+ VF ++P  + +SW  ++  Y  + + + ++  +  M+   K+      S VLK 
Sbjct: 53  LDLARLVFDTIPHPDFLSWKVIIRWYFLNSEFRDIVGFYNRMRVCLKECDNVVFSHVLKA 112

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            + S     G+ VH   ++ G   D F+   LVDMY+KCG  + +  VF    D +V +W
Sbjct: 113 CSESRNFDEGRKVHCQIVKFGNP-DSFVFTGLVDMYAKCGEIECSRSVFDENLDRNVFSW 171

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I    Q    Q+   +FN MRE  ++ NQ  L  LV A  + G    G+ +H  + K
Sbjct: 172 SSMIAGYVQNNLAQDGLVLFNRMREELIEANQITLGILVHACKKLGALHQGKWLHGYLIK 231

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G E  + +  AL+ +Y + G V     VF+ +   D VSW A+   +     P++ L++
Sbjct: 232 CGIELGSYLVTALLDLYAKCGVVRDARSVFDELHGIDIVSWTAMIVGYTQNGCPEEALKL 291

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F Q       PN  T   +  +CS L ++  G+ +H  +IK     + +V  SLVD Y K
Sbjct: 292 FLQKEQVAVLPNDVTIASVFSSCSQLLNLNLGRSIHGLSIKLG-SRDPIVTNSLVDFYAK 350

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
                DA   F++++++D+ A+ +II++++Q G A  AL+ F +MR+  +  +  TL S 
Sbjct: 351 CQMNRDARYVFETISDRDVVAWNSIISAFSQNGSAYEALELFHQMRMGSVLPDAVTLVSV 410

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLL-DMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
           L+ C+ +  L  G   H+ AVK G L  +++V TAL+  YAKCG  + A  +F G   + 
Sbjct: 411 LSACASLNALQVGSSFHAYAVKRGLLSSNVYVGTALLTFYAKCGDAESARVIFDGMDQKS 470

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
           T +W+ MI GY   G G  +L  F  ML     P+E  F  +LSACSH G+I EG + F+
Sbjct: 471 TVTWSAMISGYGIQGNGRGSLSIFGDMLKAELKPNEEIFTSILSACSHTGMIGEGWRLFT 530

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
            I + Y + P+ KH+ CM+D+L RAG+  E  +FI +  + P+  ++   L  C  H   
Sbjct: 531 MICQDYNLVPSTKHYTCMVDLLARAGRLKEALDFIQKMPVQPDVSLFGAFLHGCGLHSRF 590

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +L E   +++LEL P     YV   ++ A+  RW+    VR L+  +G+ K P CS +E+
Sbjct: 591 DLGELAIKRMLELHPGDACYYVLMCNLYASDARWSKVKQVRELMKQRGLMKTPGCSLMEM 650

Query: 600 D 600
           D
Sbjct: 651 D 651



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 126/412 (30%), Positives = 205/412 (49%), Gaps = 3/412 (0%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           +HA  +  G   D   S  LV +Y   G  D A  VF  I  PD ++W  II        
Sbjct: 24  MHAYLVVQGLTRDLSCSTKLVSLYGSFGRLDLARLVFDTIPHPDFLSWKVIIRWYFLNSE 83

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
            ++    +N MR    + +  V + +++A +E+ +   G  +H  I K+G   D+ V   
Sbjct: 84  FRDIVGFYNRMRVCLKECDNVVFSHVLKACSESRNFDEGRKVHCQIVKFG-NPDSFVFTG 142

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           LV MY + G +     VF+    ++  SW+++ + +        GL +F +M  +  + N
Sbjct: 143 LVDMYAKCGEIECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRMREELIEAN 202

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
             T  +++ AC  L  +  GK LH + IK  ++    + T+L+D+Y K G + DA   FD
Sbjct: 203 QITLGILVHACKKLGALHQGKWLHGYLIKCGIELGSYLVTALLDLYAKCGVVRDARSVFD 262

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
            L   D+ ++TA+I  Y Q G  E ALK F +     +  N+ T+AS  + CS +  L  
Sbjct: 263 ELHGIDIVSWTAMIVGYTQNGCPEEALKLFLQKEQVAVLPNDVTIASVFSSCSQLLNLNL 322

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
           GR +H +++K G   D  V+ +LV  YAKC    DA  VF+  + RD  +WN +I  + +
Sbjct: 323 GRSIHGLSIKLGS-RDPIVTNSLVDFYAKCQMNRDARYVFETISDRDVVAWNSIISAFSQ 381

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKK 483
           +G   +ALE F  M     +PD +T V VLSAC+ +  ++ G   H  ++K+
Sbjct: 382 NGSAYEALELFHQMRMGSVLPDAVTLVSVLSACASLNALQVGSSFHAYAVKR 433



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 137/294 (46%), Gaps = 10/294 (3%)

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
           ++HA+ +   L  +    T LV +Y   G L+ A + FD++ + D  ++  II  Y    
Sbjct: 23  EMHAYLVVQGLTRDLSCSTKLVSLYGSFGRLDLARLVFDTIPHPDFLSWKVIIRWYFLNS 82

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST 393
           E    +  + +MR+   + +    +  L  CS       GR +H   VK G+  D FV T
Sbjct: 83  EFRDIVGFYNRMRVCLKECDNVVFSHVLKACSESRNFDEGRKVHCQIVKFGN-PDSFVFT 141

Query: 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP 453
            LV MYAKCG I+ + +VF  +  R+  SW+ MI GYV++ L +  L  F  M +E    
Sbjct: 142 GLVDMYAKCGEIECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRMREELIEA 201

Query: 454 DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENF 513
           ++IT  +++ AC  +G + +GK     + K  GI         ++D+  + G   +  + 
Sbjct: 202 NQITLGILVHACKKLGALHQGKWLHGYLIKC-GIELGSYLVTALLDLYAKCGVVRDARSV 260

Query: 514 ITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
             E     + + W  ++   + +G         E+ L+L  + E   V P+D++
Sbjct: 261 FDELH-GIDIVSWTAMIVGYTQNGC-------PEEALKLFLQKEQVAVLPNDVT 306


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 195/586 (33%), Positives = 300/586 (51%), Gaps = 42/586 (7%)

Query: 52   FSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYR 111
            F L+T++  +A  G +   + V           + F   +L+  +++ G   +A  +F+ 
Sbjct: 796  FLLNTLVSAYARLGRLPDARRVFDEIPHP----NTFSYNALLSAHARLGRPADARALFHA 851

Query: 112  IKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG 171
            I DPD  ++ A+I  L Q     +A      M       N +   S + A     D R G
Sbjct: 852  IPDPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTG 911

Query: 172  ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY 231
              +HA++ K     D  +G+AL+ MY +        RVFEA+  ++ VSWN+L + ++  
Sbjct: 912  VQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQN 971

Query: 232  ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS-LDGNHVV 290
                + L +F  M+  GF P+  T   ++ AC+ L+    G+Q+HA  +K      + V+
Sbjct: 972  GPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMVL 1031

Query: 291  GTSLVDMYDKSG------CL-------------------------EDAGVAFDSLANKDL 319
              +LVDMY K G      C+                         EDA + F  +  K++
Sbjct: 1032 SNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVEKNV 1091

Query: 320  FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSI 379
             A+  +I +YAQ GE E AL+ F +++ E +    +T  + LN C  VA L  G+  H  
Sbjct: 1092 IAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQAHVH 1151

Query: 380  AVKTGHLLD------MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKH 433
             +K G   D      +FV  +LV MY K GSIDD   VF+  A RD  SWN MI G+ ++
Sbjct: 1152 VLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGHAQN 1211

Query: 434  GLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKH 493
            G  + AL  F  ML     PD +T + VLSAC H GL+EEG+++F S+ + +GI P+  H
Sbjct: 1212 GRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHGIIPSQDH 1271

Query: 494  FACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELE 553
            + CMID+LGRAG   E+E  I E  + P+A++W +LLG+C  H N+E+ E  A KL EL+
Sbjct: 1272 YTCMIDLLGRAGHLKEVEELIKEMSMEPDAVLWASLLGSCRLHKNVEMGEWAAGKLFELD 1331

Query: 554  PKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            P+    YV  S++ A  G+W D   VR+ +  +G+ K+P CSWIE+
Sbjct: 1332 PRNSGPYVLLSNMYAELGKWADVFRVRSSMKHRGVSKQPGCSWIEI 1377



 Score =  251 bits (642), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 157/601 (26%), Positives = 284/601 (47%), Gaps = 35/601 (5%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F  MP  +  SWNA++   + +G   + + LF +M  +  +    ++++VL   A 
Sbjct: 104 ARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGIRPKDATMASVLSCCAE 163

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +   + +H    +     +  L  +LVD+Y  C L  +A + F  I +P+ ++W  I
Sbjct: 164 CLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNAISWNVI 223

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +      G    A  +F  M  + V+P  + ++  V A  +      G  IHA + ++G+
Sbjct: 224 VRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRHGY 283

Query: 184 ESDTLVGNALVSMY-----------------MEN--------------GRVSYGSRVFEA 212
           E    V +++V MY                 M++              GR++   RVFE 
Sbjct: 284 EHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEG 343

Query: 213 IAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFG 272
           +  ++ VSWNA+ + +         L +F QM  +  + +  T   +L AC+ + D+G G
Sbjct: 344 MKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKG 403

Query: 273 KQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG--VAFDSLANKDLFAYTAIITSYA 330
           +++HA  IK     + ++  +LV MY K GCL  A   + F+  + +D +++ ++I+ Y 
Sbjct: 404 EEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYE 463

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
           +   +E AL    KM+ E +  N+ T +S L  C+ +  L  G  +H+  ++ G+ +D  
Sbjct: 464 RHSMSEAALYALTKMQSE-VTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEIDDI 522

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
           + + L+ MY KC   D +  +F+    RD   WN MI G    G GE  L+ F  M  +G
Sbjct: 523 LRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQKQG 582

Query: 451 YVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEI 510
              D +TF+  L +C   G +  G+ +F+ +     I P I+H+ CMI++LG+ G   E+
Sbjct: 583 IKADSVTFLGALVSCISEGHVRLGRSYFTLMMD-ESIIPRIEHYECMIELLGKHGCMVEL 641

Query: 511 ENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQ 570
           E+F+      P   +W  +   C  +GN +L E+ A+ + +  P     +V   D  +  
Sbjct: 642 EDFVEHMPFEPTTAMWLRIFDCCREYGNRKLGERAAKCINDSNPLTPVQFVATVDYESND 701

Query: 571 G 571
           G
Sbjct: 702 G 702



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 130/488 (26%), Positives = 239/488 (48%), Gaps = 38/488 (7%)

Query: 87  FLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRES 146
           FL    ++  + CG   +A ++F  +   D  +W AIIT   + G   EA  +F+ M   
Sbjct: 86  FLFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSL 145

Query: 147 SVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYG 206
            ++P    + S++    E  D      +H  I K  F+S+ ++G ALV +Y     ++  
Sbjct: 146 GIRPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADA 205

Query: 207 SRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266
            R F+ I   +++SWN +  R+      D  + +F++ML  G +P   T    + AC   
Sbjct: 206 RRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDN 265

Query: 267 SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE--------------------- 305
           + +  G+ +HA  ++H  + +  V +S+VDMY K G ++                     
Sbjct: 266 NALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIV 325

Query: 306 ----------DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
                     DA   F+ +  ++L ++ A++T Y ++ +   AL  F++MR E  + +  
Sbjct: 326 SGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAI 385

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA--VFK 413
           TL S L+ C+ +  +  G  +H+ A+K G      +  ALV MY+KCG +  AE   +F+
Sbjct: 386 TLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFE 445

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
             + RD+ SWN +I GY +H + E AL A   M  E   P++ TF   L+AC+++ L+++
Sbjct: 446 MGSERDSYSWNSLISGYERHSMSEAALYALTKMQSE-VTPNQSTFSSALAACANIFLLKQ 504

Query: 474 GKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
           G + H   I+K Y I   ++  + +ID+  +  +F +    I E + + + ++W +++  
Sbjct: 505 GMQIHAYMIRKGYEIDDILR--SVLIDMYCKCRQF-DYSIRIFEARPSRDVILWNSMIFG 561

Query: 533 CSWHGNIE 540
           C++ G  E
Sbjct: 562 CAYSGKGE 569



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 118/470 (25%), Positives = 215/470 (45%), Gaps = 40/470 (8%)

Query: 4    AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
            A+ +F ++P+ +  S+NA++   A+   G   +    +M   +   + +S ++ L   A 
Sbjct: 845  ARALFHAIPDPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAA 904

Query: 64   SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                + G  VHA+  +   A D ++  +L+DMY+KC   + A +VF  + + ++V+W ++
Sbjct: 905  EKDSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSL 964

Query: 124  ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG- 182
            ITC +Q G   EA  +F  M ++   P++  L S++ A       R G  +HA + K   
Sbjct: 965  ITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDR 1024

Query: 183  FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS---------------------- 220
            F  D ++ NALV MY + GR      VF+ +A +  VS                      
Sbjct: 1025 FREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFS 1084

Query: 221  ---------WNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGF 271
                     WN L + +      ++ LR+F ++  +   P   T+  +L AC +++D+  
Sbjct: 1085 QMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQL 1144

Query: 272  GKQLHAHTIKHSL------DGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
            G+Q H H +K         + +  VG SLVDMY K+G ++D    F+ +A +D  ++ A+
Sbjct: 1145 GQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAM 1204

Query: 326  ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG-RLLHSIAVKTG 384
            I  +AQ G A+ AL  F +M       +  T+   L+ C     +  G R   S+    G
Sbjct: 1205 IVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHG 1264

Query: 385  HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DTASWNMMIGGYVKH 433
             +      T ++ +  + G + + E + K  ++  D   W  ++G    H
Sbjct: 1265 IIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEPDAVLWASLLGSCRLH 1314



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/348 (29%), Positives = 169/348 (48%), Gaps = 47/348 (13%)

Query: 2    ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
            E A+RVF++MPE N+VSWN+L+  Y ++G   + + LF SM        + +L++V+   
Sbjct: 944  EEARRVFEAMPERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSAC 1003

Query: 62   ANSGYIKAGQVVHAMAIRLGCALDKF-----LSCSLVDMYSKCGLA-------------- 102
            A     + G+ VHA  ++     D+F     LS +LVDMY+KCG                
Sbjct: 1004 AGLAADREGRQVHARVVK----SDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRS 1059

Query: 103  -----------------DNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRE 145
                             ++A  VF ++ + +V+AW  +I    Q G  +EA ++F  ++ 
Sbjct: 1060 VVSETSLITGYARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKR 1119

Query: 146  SSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF------ESDTLVGNALVSMYME 199
             SV P  +   +++ A     D + G+  H  + K GF      ESD  VGN+LV MY++
Sbjct: 1120 ESVWPTHYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLK 1179

Query: 200  NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVI 259
             G +  G++VFE +A +D+VSWNA+             L +F +ML     P+  T I +
Sbjct: 1180 TGSIDDGAKVFERMAARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGV 1239

Query: 260  LKACSSLSDVGFGKQ-LHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
            L AC     V  G++   + T  H +  +    T ++D+  ++G L++
Sbjct: 1240 LSACGHSGLVEEGRRYFRSMTEDHGIIPSQDHYTCMIDLLGRAGHLKE 1287



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 172/385 (44%), Gaps = 39/385 (10%)

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
           T + N  +      G V+    +F+ +  +D  SWNA+ +       P + L +F  M  
Sbjct: 85  TFLFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNS 144

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
            G +P   T   +L  C+   D+   +QLH H  K     N ++GT+LVD+Y     L D
Sbjct: 145 LGIRPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLAD 204

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A  AFD +   +  ++  I+  Y  AG  +MA+  F +M   G++   +T++  +  C  
Sbjct: 205 ARRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRD 264

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSID-------------------- 406
              L  GR +H+  ++ G+   + V +++V MYAKCG++D                    
Sbjct: 265 NNALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSI 324

Query: 407 -----------DAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE 455
                      DA+ VF+G   R+  SWN M+ GY++      AL  F+ M  E    D 
Sbjct: 325 VSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDA 384

Query: 456 ITFVVVLSACSHMGLIEEGKK---HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIEN 512
           IT   VLSAC+  G+++ GK    H  +IK  +  +P +K+   ++ +  + G     E 
Sbjct: 385 ITLGSVLSACT--GILDIGKGEEVHAFAIKCGFFSSPILKN--ALVRMYSKCGCLRSAER 440

Query: 513 FIT-ETKLTPNALVWENLLGACSWH 536
            +  E     ++  W +L+     H
Sbjct: 441 LLLFEMGSERDSYSWNSLISGYERH 465



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 164/368 (44%), Gaps = 64/368 (17%)

Query: 180  KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR------------ 227
            K  F ++T + N LVS Y   GR+    RVF+ I H ++ S+NAL S             
Sbjct: 788  KSPFVAETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARA 847

Query: 228  -FQDYESPDQ------------------GLRIFYQMLLKGFKPNMCTFIVILKACSSLSD 268
             F     PDQ                   L     M    F  N  +F   L AC++  D
Sbjct: 848  LFHAIPDPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKD 907

Query: 269  VGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITS 328
               G Q+HA   K     +  +G++L+DMY K    E+A   F+++  +++ ++ ++IT 
Sbjct: 908  SRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITC 967

Query: 329  YAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL- 387
            Y Q G    AL  F  M   G   +E TLAS ++ C+ +A    GR +H+  VK+     
Sbjct: 968  YEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFRE 1027

Query: 388  DMFVSTALVAMYAKCG-------------------------------SIDDAEAVFKGSA 416
            DM +S ALV MYAKCG                               +++DA+ VF    
Sbjct: 1028 DMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMV 1087

Query: 417  LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
             ++  +WN++I  Y ++G  E+AL  F  +  E   P   T+  VL+AC ++  ++ G++
Sbjct: 1088 EKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQ 1147

Query: 477  -HFSSIKK 483
             H   +K+
Sbjct: 1148 AHVHVLKE 1155



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 129/544 (23%), Positives = 215/544 (39%), Gaps = 97/544 (17%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AKRVF+ M E N+VSWNA+L GY  S D    + LF  M+   ++F   +L +VL     
Sbjct: 337 AKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTG 396

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNA--LKVFYRIKDPDVVAWG 121
              I  G+ VHA AI+ G      L  +LV MYSKCG   +A  L +F    + D  +W 
Sbjct: 397 ILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWN 456

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           ++I+  ++    + A      M +S V PNQ   +S + A       + G  IHA + + 
Sbjct: 457 SLISGYERHSMSEAALYALTKM-QSEVTPNQSTFSSALAACANIFLLKQGMQIHAYMIRK 515

Query: 182 GFE-------------------------------SDTLVGNALVSMYMENGRVSYGSRVF 210
           G+E                                D ++ N+++     +G+  YG  +F
Sbjct: 516 GYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLF 575

Query: 211 EAIAHQ----DSVSW-------------------------NALFSRFQDYES-----PDQ 236
           + +  Q    DSV++                          ++  R + YE         
Sbjct: 576 DEMQKQGIKADSVTFLGALVSCISEGHVRLGRSYFTLMMDESIIPRIEHYECMIELLGKH 635

Query: 237 GLRIFYQMLLK--GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
           G  +  +  ++   F+P    ++ I   C    +   G++  A  I  S     V   + 
Sbjct: 636 GCMVELEDFVEHMPFEPTTAMWLRIFDCCREYGNRKLGERA-AKCINDSNPLTPVQFVAT 694

Query: 295 VDMYDKSGCLEDAGVAFDSLAN--KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI-- 350
           VD     G  E    +F S     ++L         ++  GEA  +L      R   I  
Sbjct: 695 VDYESNDGGREAESTSFSSEGEGCEEL--------PFSLEGEASGSLPAPLTTRPLAIWY 746

Query: 351 ---KSNEFTLASCLNGCSPVA-------TLANGRLLHSIAVKTGHLLDMFVSTALVAMYA 400
              + +     S L   +P+A        L   R  H+ A+K+  + + F+   LV+ YA
Sbjct: 747 GMARHHHHHFVSHLRASAPLADLLRSAPNLPAARAAHARALKSPFVAETFLLNTLVSAYA 806

Query: 401 KCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVV 460
           + G + DA  VF      +T S+N ++  + + G    A   F  + D    PD+ ++  
Sbjct: 807 RLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAIPD----PDQCSYNA 862

Query: 461 VLSA 464
           V++A
Sbjct: 863 VIAA 866



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 6/172 (3%)

Query: 1    MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
            +E A+ VF  M E NV++WN L+  YA++G+ ++ + LF  +K      + ++   VL  
Sbjct: 1076 VEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNA 1135

Query: 61   FANSGYIKAGQVVHAMAIR------LGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
              N   ++ GQ  H   ++       G   D F+  SLVDMY K G  D+  KVF R+  
Sbjct: 1136 CGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAA 1195

Query: 115  PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
             D V+W A+I    Q G  ++A  +F  M  S   P+   +  ++ A   +G
Sbjct: 1196 RDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSG 1247


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 202/599 (33%), Positives = 303/599 (50%), Gaps = 69/599 (11%)

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
            ++VHA  I+   + + F+   LVD+Y KCG  ++A KVF  ++  +  +W A++  L +
Sbjct: 38  ARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGALTK 97

Query: 130 QGCCQEAAKIFNLMRESS--------------------------VKPNQFVLT-----SL 158
            G   EA  +F  M E                            +    FVL      S 
Sbjct: 98  FGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSA 157

Query: 159 VRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDS 218
           + A     D   G  IH +I K  +  D  +G+ALV MY +   V+   R F+ +  ++ 
Sbjct: 158 LSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNI 217

Query: 219 VSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAH 278
           VSWN+L + ++      + L +F +M+  G +P+  T   +  AC+SLS +  G Q+HA 
Sbjct: 218 VSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHAR 277

Query: 279 TIKHSLDGNHVV-GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQA----- 332
            +KH    N +V G +LVDMY K   + +A + FD +  +D+ + T++++ YA+A     
Sbjct: 278 VMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKA 337

Query: 333 --------------------------GEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
                                     GE E A++ F  ++ E I    +T  + LN C+ 
Sbjct: 338 ARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACAN 397

Query: 367 VATLANGR------LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           +A L  GR      L H    K+G   D+FV  +L+ MY KCG ++D   VF+    RD 
Sbjct: 398 LADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDN 457

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SWN MI GY ++G G +ALE FR ML  G  PD +T + VLSACSH GL+EEG+ +F S
Sbjct: 458 VSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQS 517

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +   +G+ P   H+ CM+D+LGRAG   E  N I    + P+A+VW +LL AC  HGNI 
Sbjct: 518 MTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHGNIT 577

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           L +  AE+LLE++P     YV  S++ A  GRW D   VR  +   G+ K+P CSWI +
Sbjct: 578 LGKYVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMGVIKQPGCSWISI 636



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 128/474 (27%), Positives = 229/474 (48%), Gaps = 40/474 (8%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  +FK MPE +  SWNA+++G+A+    ++ +     M   +   +++S  + L  
Sbjct: 101 LDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSA 160

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    +  G  +H +  +   +LD ++  +LVDMYSKC +  +A + F  +   ++V+W
Sbjct: 161 CAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSW 220

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++ITC +Q G   +A ++F  M    ++P++  L S+  A       R G  IHA + K
Sbjct: 221 NSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMK 280

Query: 181 YG-FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQD---------------------- 217
           +  + +D ++GNALV MY +  RV+    VF+ +  +D                      
Sbjct: 281 HDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARL 340

Query: 218 ---------SVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSD 268
                     VSWNAL + +      ++ +R+F  +  +   P   TF  +L AC++L+D
Sbjct: 341 MFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLAD 400

Query: 269 VGFGKQLHAHTIKHSL------DGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAY 322
           +  G+Q H H +KH        D +  VG SL+DMY K G +ED  + F+ +  +D  ++
Sbjct: 401 LKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSW 460

Query: 323 TAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR-LLHSIAV 381
            A+I  YAQ G    AL+ FR+M + G + +  T+   L+ CS    +  GR    S+ +
Sbjct: 461 NAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTI 520

Query: 382 KTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DTASWNMMIGGYVKHG 434
           + G +      T +V +  + G +D+A  + +   +  D   W  ++     HG
Sbjct: 521 EHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHG 574



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 120/259 (46%), Gaps = 31/259 (11%)

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
           F  +L  C     V   + +HA  IK        +   LVD+Y K G LEDA   FD + 
Sbjct: 22  FAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQ 81

Query: 316 NKDLFAYTAI-------------------------------ITSYAQAGEAEMALKCFRK 344
            ++ F++ A+                               ++ +AQ    E AL+    
Sbjct: 82  QRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVD 141

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404
           M  E    NE++  S L+ C+ +  L+ G  +H +  K+ + LD+++ +ALV MY+KC  
Sbjct: 142 MHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRV 201

Query: 405 IDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
           +  A+  F    +R+  SWN +I  Y ++G   KALE F  M++ G  PDEIT   V SA
Sbjct: 202 VASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASA 261

Query: 465 CSHMGLIEEGKKHFSSIKK 483
           C+ +  I EG +  + + K
Sbjct: 262 CASLSAIREGLQIHARVMK 280


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 194/589 (32%), Positives = 310/589 (52%), Gaps = 5/589 (0%)

Query: 15   NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVH 74
            N+ +WN  L  +  +G     +  F ++          +L  +L     +  +  G+ +H
Sbjct: 858  NIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIH 917

Query: 75   AMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQ 134
            A+ I+   A    +S SL++MYSK G+   A K F    + D+++W  +I+   Q     
Sbjct: 918  ALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEM 977

Query: 135  EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ----RCGESIHAVICKYGFESDTLVG 190
            EA   F  +    +KP+QF L S++RA + TGD+      G  +H    K G  +D+ V 
Sbjct: 978  EAICTFRDLLRDGLKPDQFTLASVLRACS-TGDEGEYFTLGSQVHVYAIKCGIINDSFVS 1036

Query: 191  NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFK 250
             AL+ +Y + G++     +       D  SWNA+   +       + L  F  M   G  
Sbjct: 1037 TALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIP 1096

Query: 251  PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVA 310
             +  T    +KA   L ++  GKQ+ A+ IK   + +  V + ++DMY K G + +A   
Sbjct: 1097 IDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALEL 1156

Query: 311  FDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATL 370
            F  ++  D  A+T +I+ Y + G+ + AL  +  MR+ G++ +E+T A+ +   S +  L
Sbjct: 1157 FGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTAL 1216

Query: 371  ANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGY 430
              G+ +H+  VK  + LD FV T+LV MY KCGS+ DA  VF+   +R    WN M+ G 
Sbjct: 1217 EQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGL 1276

Query: 431  VKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT 490
             +HG  ++AL  FR M   G  PD++TF+ VLSACSH GL  E  K+F ++ K YGITP 
Sbjct: 1277 AQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPE 1336

Query: 491  IKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLL 550
            I+H++C++D LGRAG+  E EN I       +A ++  LLGAC   G+ E  ++ A+KLL
Sbjct: 1337 IEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLL 1396

Query: 551  ELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
             L+P   S YV  S+I A   +W+D +  R ++  + +KK+P  SWI+V
Sbjct: 1397 ALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDV 1445



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 141/487 (28%), Positives = 232/487 (47%), Gaps = 45/487 (9%)

Query: 4    AKRVFKSMPELNVVSWNALLNGYAESGDG--QKVM---HLFCSMKDMEKKFSKFSLSTVL 58
            A++VF    + ++V+WN++L  YA+  D   + V+    LF  +++     ++ +L+ +L
Sbjct: 665  ARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLL 724

Query: 59   KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
            K    SG+++  + VH  A+++G  LD F+S +LV++Y K GL   A  +F ++ + D V
Sbjct: 725  KLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAV 784

Query: 119  AWGAIITCLDQQGCCQEAAKIFNLMRESSVKP---NQFVLTSLVRATTETGDQRCGESIH 175
             W  ++    +     EA + F+    S   P   N   +   V +      +R  E + 
Sbjct: 785  LWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNLHCVIGGVNSDVSNNRKRHAEQVK 844

Query: 176  AVICK-YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
            A   K + F+                     GS +F         +WN   + F      
Sbjct: 845  AYAMKMFPFDQ--------------------GSNIF---------AWNKKLTEFLHAGQI 875

Query: 235  DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
               +  F  +L      +  T ++IL A     D+  G+Q+HA  IK S      V  SL
Sbjct: 876  VAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSL 935

Query: 295  VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
            ++MY K+G +  A   F +    DL ++  +I+SYAQ      A+  FR +  +G+K ++
Sbjct: 936  MNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQ 995

Query: 355  FTLASCLNGCSP-----VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
            FTLAS L  CS        TL  G  +H  A+K G + D FVSTAL+ +Y+K G +D+AE
Sbjct: 996  FTLASVLRACSTGDEGEYFTL--GSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAE 1053

Query: 410  AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
             +  G    D ASWN ++ GY+K     KALE F +M + G   DEIT    + A   + 
Sbjct: 1054 FLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLI 1113

Query: 470  LIEEGKK 476
             +++GK+
Sbjct: 1114 NLKQGKQ 1120



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 131/475 (27%), Positives = 218/475 (45%), Gaps = 41/475 (8%)

Query: 67   IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
            +K G+  HA  +  G   D++L+ +L+ MYSKCG   +A +VF +  D D+V W +I+  
Sbjct: 627  LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686

Query: 127  LDQQGCCQ-----EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
              Q          E  ++F L+RE      +  L  L++    +G  +  E++H    K 
Sbjct: 687  YAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKI 746

Query: 182  GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
            GFE D  V  ALV++Y + G V     +F+ +  +D+V WN +   + +    D+ LR F
Sbjct: 747  GFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFF 806

Query: 242  YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
                  GF P+      ++   +  SDV   ++ HA  +K             + M+   
Sbjct: 807  SAFHRSGFFPDFSNLHCVIGGVN--SDVSNNRKRHAEQVK----------AYAMKMF--- 851

Query: 302  GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
                     FD  +N  +FA+   +T +  AG+   A+ CF+ +    I  +  TL   L
Sbjct: 852  --------PFDQGSN--IFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIIL 901

Query: 362  NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
            +       L  G  +H++ +K+     + VS +L+ MY+K G +  AE  F  S   D  
Sbjct: 902  SAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLI 961

Query: 422  SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS-- 479
            SWN MI  Y ++ L  +A+  FR +L +G  PD+ T   VL ACS     +EG ++F+  
Sbjct: 962  SWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACS---TGDEG-EYFTLG 1017

Query: 480  SIKKIYGITPTIKHFA----CMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
            S   +Y I   I + +     +ID+  + GK  E E F+   K   +   W  ++
Sbjct: 1018 SQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAE-FLLHGKYDFDLASWNAIM 1071



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 185/372 (49%), Gaps = 11/372 (2%)

Query: 1    MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
            M+ A+ +     + ++ SWNA++ GY +S   +K +  F  M +M     + +L+T +K 
Sbjct: 1049 MDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKA 1108

Query: 61   FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                  +K G+ + A AI+LG   D ++S  ++DMY KCG   NAL++F  I  PD VAW
Sbjct: 1109 SGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAW 1168

Query: 121  GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
              +I+   + G    A  +++LMR S V+P+++   +L++A++       G+ IHA + K
Sbjct: 1169 TTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVK 1228

Query: 181  YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              +  D  VG +LV MY + G V    RVF  +  +  V WNA+      +   D+ L +
Sbjct: 1229 LDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNL 1288

Query: 241  FYQMLLKGFKPNMCTFIVILKACS-----SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
            F  M   G +P+  TFI +L ACS     S +   F      + I   ++  H   + LV
Sbjct: 1289 FRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIE--HY--SCLV 1344

Query: 296  DMYDKSGCLEDAGVAFDSLANK-DLFAYTAIITSYAQAGEAEMALKCFRK-MRLEGIKSN 353
            D   ++G +++A     S+  K     Y A++ +    G+AE A +   K + L+   S+
Sbjct: 1345 DALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSS 1404

Query: 354  EFTLASCLNGCS 365
             + L S +   S
Sbjct: 1405 AYVLLSNIYAAS 1416



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 98/199 (49%), Gaps = 5/199 (2%)

Query: 261 KACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLF 320
           ++  +++D+  GK+ HA  +      +  +  +L+ MY K G L  A   FD  +++DL 
Sbjct: 619 RSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLV 678

Query: 321 AYTAIITSYAQAGEA--EMALKCFR---KMRLEGIKSNEFTLASCLNGCSPVATLANGRL 375
            + +I+ +YAQ  ++  E  L+ FR    +R  G      TLA  L  C     +     
Sbjct: 679 TWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSET 738

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           +H  AVK G  LD+FVS ALV +Y K G +  A  +F     RD   WN+M+  YV++  
Sbjct: 739 VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSF 798

Query: 436 GEKALEAFRMMLDEGYVPD 454
            ++AL  F      G+ PD
Sbjct: 799 QDEALRFFSAFHRSGFFPD 817


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 218/619 (35%), Positives = 325/619 (52%), Gaps = 30/619 (4%)

Query: 10  SMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKA 69
           S+   +   WN+L+   A + + Q  +  F  M+      + F+   +LK  A    +  
Sbjct: 12  SISHKDTFHWNSLIAKNA-TQNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLP 70

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP--DVVAWGAIITCL 127
              VHA   RLG A D+F + +LVD Y KCG A  A +VF  + +   DVV+W A+I+  
Sbjct: 71  TLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAY 130

Query: 128 DQQGCCQEAAKIFNLMR-------ESSVKPNQFVLTSLVRATTETGDQRC---GESIHAV 177
              GC  EA K F  MR             +   L +LV A        C   G ++H +
Sbjct: 131 SSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGL 190

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA--HQDSVSWNALFSRFQDYESPD 235
           + KYGF   T +GN++V MY     V    RVF  I    +D VSWN+L S F      +
Sbjct: 191 VVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAE 250

Query: 236 QGLRIFYQMLLKG---FKPNMCTFIVILKACSSLSDVGFGKQLHAH-TIKHS---LDGNH 288
           + LR F  M+ +G    +PN  T I +LK+C+ L  V     +H + + +HS   +  + 
Sbjct: 251 RALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDV 310

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
           VV T+L+DM+ + G L  A   FD +  K++  ++A+I  Y Q    E AL+ FR+M +E
Sbjct: 311 VVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLME 370

Query: 349 G------IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC 402
           G      +K N  TL S +  CS +    +  ++H  AV TG   D  +++AL+ M AKC
Sbjct: 371 GNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKC 430

Query: 403 GSIDDAEAVFK--GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVV 460
           G I+    VF     + R   SW+ MIG    HG G++ALE F  M   GY P+EIT++ 
Sbjct: 431 GDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYIS 490

Query: 461 VLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLT 520
           VLSACSH GL+E+GK  F+S++K YG++PT KH+AC++D+LGRAG   E  N I    + 
Sbjct: 491 VLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIK 550

Query: 521 PNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVR 580
            +  +W +LL AC  HGN +L E   +K+L L+     ++V  +++    GRW+D   +R
Sbjct: 551 ADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRMR 610

Query: 581 ALLSSQGIKKEPSCSWIEV 599
             L   G++K P  S+IE+
Sbjct: 611 VELRRSGLRKIPGQSFIEI 629



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 92/181 (50%), Gaps = 8/181 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLF------CSMKDMEKKFSKFSL 54
           + LA+ +F  +   NVV W+A++ GY +    ++ + LF       +M  +E K +  +L
Sbjct: 326 LALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTL 385

Query: 55  STVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
            +V+   +  G  ++  ++H  A+  G   D  ++ +L+DM +KCG  ++  +VF  + +
Sbjct: 386 VSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDE 445

Query: 115 P--DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172
               VV+W ++I      G  + A ++F+ MR    +PN+    S++ A +  G    G+
Sbjct: 446 STRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGK 505

Query: 173 S 173
           S
Sbjct: 506 S 506


>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
          Length = 669

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 187/603 (31%), Positives = 327/603 (54%), Gaps = 5/603 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A++VF  M + N   WN ++ GY+     +  + +F  M+        ++++ V+  
Sbjct: 68  MRYARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSA 127

Query: 61  FANSGYIK---AGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
            A    +K    G  +HA+  R+G   D F+   LV+ Y      + A KVF  + + DV
Sbjct: 128 SAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVEEASKVFEEMYERDV 187

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           V+W ++I+   Q G   +  K+ + M+   + PN+  + SL+ A  +T     G  ++  
Sbjct: 188 VSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQ 247

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
           + K+G E+D  + NAL+SMY + G +S     F+A+  + + SWN L   F       + 
Sbjct: 248 VGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEA 307

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           LRIF +MLL G  P+  T + +L AC+ L ++  G  +H++   + +  ++++  SL++M
Sbjct: 308 LRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINM 367

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K G +  A   F ++  KD+ ++T ++  Y +  +  MA   F +M++  + ++E  L
Sbjct: 368 YAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMAL 427

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
            S L+ CS +  L  GR +HS   +     D+ + +ALV MYAKCG ID A  +F+    
Sbjct: 428 VSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQH 487

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLD-EGYVPDEITFVVVLSACSHMGLIEEGKK 476
           + T SWN MIGG   +G G++A+E F  ML+ +   PD IT   VL AC+H+G+++EG +
Sbjct: 488 KQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGMVDEGLR 547

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
           +F  +  + G+ P  +H+ C++D+LGRAG   E  +FI +  + PN ++W +LL AC  H
Sbjct: 548 YFYLMSSL-GVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEPNPVIWGSLLAACRVH 606

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSW 596
             ++L +   + ++ + P     +V  S++ A + +W+D   VR L+ S+GI+K P  S 
Sbjct: 607 HRMDLGKVIGQHIVNVAPNDVGVHVLVSNLHAEESQWDDVEHVRGLMGSRGIEKTPGHSS 666

Query: 597 IEV 599
           ++V
Sbjct: 667 VQV 669



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 18/217 (8%)

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD---AEAVFK 413
           L + L+ C+  A LA    LH   V+     D FV+  L+A+ A   +  D   A  VF 
Sbjct: 20  LLAYLDACASRAHLAE---LHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVFD 76

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE- 472
           G A  +   WN MI GY        AL  FR M   G  PD  T   V+SA +    ++ 
Sbjct: 77  GMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAGLKW 136

Query: 473 --EGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
              G    + +++I G T  +   + +++  G A +  E  + + E     + + W +++
Sbjct: 137 RSNGDAIHALVRRI-GFTSDVFVMSGLVNYYG-AFRSVEEASKVFEEMYERDVVSWTSMI 194

Query: 531 GACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            AC+  G+        +K+L++  +M++  + P+ ++
Sbjct: 195 SACAQCGHW-------DKVLKMLSEMQAEGIIPNKVT 224


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 194/589 (32%), Positives = 310/589 (52%), Gaps = 5/589 (0%)

Query: 15   NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVH 74
            N+ +WN  L  +  +G     +  F ++          +L  +L     +  +  G+ +H
Sbjct: 858  NIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIH 917

Query: 75   AMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQ 134
            A+ I+   A    +S SL++MYSK G+   A K F    + D+++W  +I+   Q     
Sbjct: 918  ALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEM 977

Query: 135  EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ----RCGESIHAVICKYGFESDTLVG 190
            EA   F  +    +KP+QF L S++RA + TGD+      G  +H    K G  +D+ V 
Sbjct: 978  EAICTFRDLLRDGLKPDQFTLASVLRACS-TGDEGEYFTLGSQVHVYAIKCGIINDSFVS 1036

Query: 191  NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFK 250
             AL+ +Y + G++     +       D  SWNA+   +       + L  F  M   G  
Sbjct: 1037 TALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIP 1096

Query: 251  PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVA 310
             +  T    +KA   L ++  GKQ+ A+ IK   + +  V + ++DMY K G + +A   
Sbjct: 1097 IDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALEL 1156

Query: 311  FDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATL 370
            F  ++  D  A+T +I+ Y + G+ + AL  +  MR+ G++ +E+T A+ +   S +  L
Sbjct: 1157 FGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTAL 1216

Query: 371  ANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGY 430
              G+ +H+  VK  + LD FV T+LV MY KCGS+ DA  VF+   +R    WN M+ G 
Sbjct: 1217 EQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGL 1276

Query: 431  VKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT 490
             +HG  ++AL  FR M   G  PD++TF+ VLSACSH GL  E  K+F ++ K YGITP 
Sbjct: 1277 AQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPE 1336

Query: 491  IKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLL 550
            I+H++C++D LGRAG+  E EN I       +A ++  LLGAC   G+ E  ++ A+KLL
Sbjct: 1337 IEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLL 1396

Query: 551  ELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
             L+P   S YV  S+I A   +W+D +  R ++  + +KK+P  SWI+V
Sbjct: 1397 ALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDV 1445



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 141/487 (28%), Positives = 232/487 (47%), Gaps = 45/487 (9%)

Query: 4    AKRVFKSMPELNVVSWNALLNGYAESGDG--QKVM---HLFCSMKDMEKKFSKFSLSTVL 58
            A++VF    + ++V+WN++L  YA+  D   + V+    LF  +++     ++ +L+ +L
Sbjct: 665  ARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLL 724

Query: 59   KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
            K    SG+++  + VH  A+++G  LD F+S +LV++Y K GL   A  +F ++ + D V
Sbjct: 725  KLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAV 784

Query: 119  AWGAIITCLDQQGCCQEAAKIFNLMRESSVKP---NQFVLTSLVRATTETGDQRCGESIH 175
             W  ++    +     EA + F+    S   P   N   +   V +      +R  E + 
Sbjct: 785  LWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCVIGGVNSDVSNNRKRHAEQVK 844

Query: 176  AVICK-YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
            A   K + F+                     GS +F         +WN   + F      
Sbjct: 845  AYAMKMFPFDQ--------------------GSNIF---------AWNKKLTEFLHAGQI 875

Query: 235  DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
               +  F  +L      +  T ++IL A     D+  G+Q+HA  IK S      V  SL
Sbjct: 876  VAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSL 935

Query: 295  VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
            ++MY K+G +  A   F +    DL ++  +I+SYAQ      A+  FR +  +G+K ++
Sbjct: 936  MNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQ 995

Query: 355  FTLASCLNGCSP-----VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
            FTLAS L  CS        TL  G  +H  A+K G + D FVSTAL+ +Y+K G +D+AE
Sbjct: 996  FTLASVLRACSTGDEGEYFTL--GSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAE 1053

Query: 410  AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
             +  G    D ASWN ++ GY+K     KALE F +M + G   DEIT    + A   + 
Sbjct: 1054 FLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLI 1113

Query: 470  LIEEGKK 476
             +++GK+
Sbjct: 1114 NLKQGKQ 1120



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 131/475 (27%), Positives = 218/475 (45%), Gaps = 41/475 (8%)

Query: 67   IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
            +K G+  HA  +  G   D++L+ +L+ MYSKCG   +A +VF +  D D+V W +I+  
Sbjct: 627  LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686

Query: 127  LDQQGCCQ-----EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
              Q          E  ++F L+RE      +  L  L++    +G  +  E++H    K 
Sbjct: 687  YAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKI 746

Query: 182  GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
            GFE D  V  ALV++Y + G V     +F+ +  +D+V WN +   + +    D+ LR F
Sbjct: 747  GFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFF 806

Query: 242  YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
                  GF P+      ++   +  SDV   ++ HA  +K             + M+   
Sbjct: 807  SAFHRSGFXPDFSNLHCVIGGVN--SDVSNNRKRHAEQVK----------AYAMKMF--- 851

Query: 302  GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
                     FD  +N  +FA+   +T +  AG+   A+ CF+ +    I  +  TL   L
Sbjct: 852  --------PFDQGSN--IFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIIL 901

Query: 362  NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
            +       L  G  +H++ +K+     + VS +L+ MY+K G +  AE  F  S   D  
Sbjct: 902  SAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLI 961

Query: 422  SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS-- 479
            SWN MI  Y ++ L  +A+  FR +L +G  PD+ T   VL ACS     +EG ++F+  
Sbjct: 962  SWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACS---TGDEG-EYFTLG 1017

Query: 480  SIKKIYGITPTIKHFA----CMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
            S   +Y I   I + +     +ID+  + GK  E E F+   K   +   W  ++
Sbjct: 1018 SQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAE-FLLHGKYDFDLASWNAIM 1071



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 185/372 (49%), Gaps = 11/372 (2%)

Query: 1    MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
            M+ A+ +     + ++ SWNA++ GY +S   +K +  F  M +M     + +L+T +K 
Sbjct: 1049 MDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKA 1108

Query: 61   FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                  +K G+ + A AI+LG   D ++S  ++DMY KCG   NAL++F  I  PD VAW
Sbjct: 1109 SGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAW 1168

Query: 121  GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
              +I+   + G    A  +++LMR S V+P+++   +L++A++       G+ IHA + K
Sbjct: 1169 TTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVK 1228

Query: 181  YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              +  D  VG +LV MY + G V    RVF  +  +  V WNA+      +   D+ L +
Sbjct: 1229 LDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNL 1288

Query: 241  FYQMLLKGFKPNMCTFIVILKACS-----SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
            F  M   G +P+  TFI +L ACS     S +   F      + I   ++  H   + LV
Sbjct: 1289 FRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIE--HY--SCLV 1344

Query: 296  DMYDKSGCLEDAGVAFDSLANK-DLFAYTAIITSYAQAGEAEMALKCFRK-MRLEGIKSN 353
            D   ++G +++A     S+  K     Y A++ +    G+AE A +   K + L+   S+
Sbjct: 1345 DALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSS 1404

Query: 354  EFTLASCLNGCS 365
             + L S +   S
Sbjct: 1405 AYVLLSNIYAAS 1416



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 98/199 (49%), Gaps = 5/199 (2%)

Query: 261 KACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLF 320
           ++  +++D+  GK+ HA  +      +  +  +L+ MY K G L  A   FD  +++DL 
Sbjct: 619 RSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLV 678

Query: 321 AYTAIITSYAQAGEA--EMALKCFR---KMRLEGIKSNEFTLASCLNGCSPVATLANGRL 375
            + +I+ +YAQ  ++  E  L+ FR    +R  G      TLA  L  C     +     
Sbjct: 679 TWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSET 738

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           +H  AVK G  LD+FVS ALV +Y K G +  A  +F     RD   WN+M+  YV++  
Sbjct: 739 VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSF 798

Query: 436 GEKALEAFRMMLDEGYVPD 454
            ++AL  F      G+ PD
Sbjct: 799 QDEALRFFSAFHRSGFXPD 817


>gi|242084292|ref|XP_002442571.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
 gi|241943264|gb|EES16409.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
          Length = 698

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 191/601 (31%), Positives = 327/601 (54%), Gaps = 5/601 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+RVF  +P  + VSWN+LL  +  +G  +    L   M       S F+L + L+  A 
Sbjct: 48  ARRVFDEIPRPDAVSWNSLLAAHVAAGAHRDAWRLLKDMHARGLTASTFALGSALRSAAA 107

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +   + G  + + A++ G   + F + +L+D+Y+KCG   +A +VF  +   + V+W A+
Sbjct: 108 ARRPELGAQLQSFAVKSGLVDNVFSASALLDVYAKCGRLSDARRVFDGMPVRNTVSWNAL 167

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    +     +A ++F  M+   + P+     +L+            + +H  I KYG 
Sbjct: 168 IAGYAESRKPAQAMELFLEMQRVELVPDDATFAALLATVEGPSWYSLMQQLHGKIAKYGS 227

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
               +V NA ++ Y + G  +   R+F+ I  +D +SWN++   +  +   D+ +R F +
Sbjct: 228 ALGLVVLNAAITAYSQCGAFADSRRIFDGIQSRDLISWNSMLGAYAYHGMDDEAMRFFVR 287

Query: 244 MLLK-GFKPNMCTFIVILKACSSLS-DVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK- 300
           M+ + G +P+M +F  ++  CS    D   G+ +H+  +K  L+G   V  +++ MY + 
Sbjct: 288 MMRESGVQPDMYSFTSVVSVCSEHGCDDRQGRSIHSLVVKIGLEGVTHVCNAMIAMYTRF 347

Query: 301 -SGCL-EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
              C+ EDA   FDSL  KD  ++ +++T Y+  G +  AL+ FR MR E + ++EF L+
Sbjct: 348 TENCMMEDAYKCFDSLVFKDAVSWNSMLTGYSHHGLSSDALRFFRFMRAENVSTDEFALS 407

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           + L  CS +A L  GR +HS+ +++G   + FVS++L+ MY+KCG + DA   F+ +   
Sbjct: 408 AALRSCSDLAVLRLGRQVHSLVIQSGFSSNDFVSSSLIFMYSKCGMVGDARKSFEEADKG 467

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
            +  WN M+ GY +HG  +   + F  MLD     D +TFV +L+A SH GL++EG +  
Sbjct: 468 SSVPWNSMMFGYAQHGQAQTVTDLFSEMLDHKVPLDHVTFVALLTAYSHGGLVDEGSEIL 527

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           +S++  Y I   ++H+AC +D+ GRAG+  + +  I      P+A+VW  LLGAC  HGN
Sbjct: 528 NSMETRYKIPLRMEHYACGVDLYGRAGQLDKAKELIESMPFQPDAMVWMTLLGACRIHGN 587

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           +EL    A  L   EP+  S YV  S + + +G W+D + V+ ++ ++G+ K P  SWIE
Sbjct: 588 MELASDVASHLFVAEPRQHSTYVLLSSMYSGRGMWSDRATVQKVMKNRGLSKVPGWSWIE 647

Query: 599 V 599
           V
Sbjct: 648 V 648



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 107/227 (47%), Gaps = 2/227 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A + F S+   + VSWN++L GY+  G     +  F  M+       +F+LS  L+ 
Sbjct: 353 MEDAYKCFDSLVFKDAVSWNSMLTGYSHHGLSSDALRFFRFMRAENVSTDEFALSAALRS 412

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ++   ++ G+ VH++ I+ G + + F+S SL+ MYSKCG+  +A K F        V W
Sbjct: 413 CSDLAVLRLGRQVHSLVIQSGFSSNDFVSSSLIFMYSKCGMVGDARKSFEEADKGSSVPW 472

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG-ESIHAVIC 179
            +++    Q G  Q    +F+ M +  V  +     +L+ A +  G    G E ++++  
Sbjct: 473 NSMMFGYAQHGQAQTVTDLFSEMLDHKVPLDHVTFVALLTAYSHGGLVDEGSEILNSMET 532

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-DSVSWNALF 225
           +Y            V +Y   G++     + E++  Q D++ W  L 
Sbjct: 533 RYKIPLRMEHYACGVDLYGRAGQLDKAKELIESMPFQPDAMVWMTLL 579


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 197/618 (31%), Positives = 324/618 (52%), Gaps = 72/618 (11%)

Query: 49  FSKFSLSTVLKGFANSGY-IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALK 107
           FS + ++ ++  +A +G+ + A  + + M ++   + +  LS      Y+K G  + A +
Sbjct: 8   FSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSG-----YAKQGKLEKAHQ 62

Query: 108 VFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD 167
           VF  I   D V+W  II   +Q G  ++A KIF  M +  V P QF LT+++ +   TG 
Sbjct: 63  VFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGS 122

Query: 168 QRCGESIHAVICKYGFESDTLVGNALVSMY------------------------------ 197
           +  G+ +H+ + K G  +   V N+L++MY                              
Sbjct: 123 RGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISL 182

Query: 198 -MENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL-KGFKPNMCT 255
            M  GRV      FE ++ +D VSWN++ +    +   ++ L+ F  +L     KP+  +
Sbjct: 183 HMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFS 242

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG-------CLEDAG 308
               L AC++L  + FGKQ+H + ++   D +  VG +L+ MY KSG        +E +G
Sbjct: 243 LASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSG 302

Query: 309 VA--------------------------FDSLANKDLFAYTAIITSYAQAGEAEMALKCF 342
           ++                          F+SL + D+ A+TA+I  Y Q G    A++ F
Sbjct: 303 ISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVF 362

Query: 343 RKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC 402
           + M  EG + N FTLA+ L+  S V +L +G+ +H+ A+++G  L   V  AL  MYAK 
Sbjct: 363 KTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKA 422

Query: 403 GSIDDAEAVFKG-SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVV 461
           GSI+ A  VF      RDT SW  MI    +HGLGE+A+E F  ML  G  PD IT+V V
Sbjct: 423 GSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGV 482

Query: 462 LSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTP 521
           LSAC+H GL+E+G+ +F  +K ++ I PT+ H+ACM+D+ GRAG   E   F+    + P
Sbjct: 483 LSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEP 542

Query: 522 NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRA 581
           + + W +LL +C  + N++L +  AE+LL +EP     Y   +++ ++ G+W+D + +R 
Sbjct: 543 DVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRK 602

Query: 582 LLSSQGIKKEPSCSWIEV 599
           L+ ++G+KKE   SW+++
Sbjct: 603 LMKARGVKKEQGLSWVQI 620



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 6/163 (3%)

Query: 381 VKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKAL 440
           VK G    +++   L+ +YAK G   DA  +F    ++ T SWN ++ GY K G  EKA 
Sbjct: 2   VKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAH 61

Query: 441 EAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI--KKIYGITPTIKHFACMI 498
           + F ++     V D +++  ++   + MG  E+  K F  +   K+     T+ +     
Sbjct: 62  QVFDLI----PVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASC 117

Query: 499 DILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
              G  G   ++ +F+ +  L     V  +LL   +  G++++
Sbjct: 118 AATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKM 160


>gi|115466810|ref|NP_001057004.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|55773755|dbj|BAD72438.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595044|dbj|BAF18918.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|125596287|gb|EAZ36067.1| hypothetical protein OsJ_20377 [Oryza sativa Japonica Group]
          Length = 673

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 182/597 (30%), Positives = 314/597 (52%), Gaps = 9/597 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKF-----SKFSLSTVL 58
           A+ V    P  +  ++  +L    ++G     + L    +DM ++      +   LS  L
Sbjct: 74  ARGVLDGTPRPDAYAYRVMLGWLVDAGSHADAVALH---RDMRRRCPAAAQADVVLSLAL 130

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
           K    S   + G+ +H   ++ G A D F+  SLVDMY+K G  +NA KVF R+ + +VV
Sbjct: 131 KACVRSADFRYGRRLHCDVVKAGGA-DGFVMNSLVDMYAKAGDLENARKVFDRVPERNVV 189

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +W ++++   Q G  +E   +FN MR+ +V P+++ + S++ A    G    G  IH  +
Sbjct: 190 SWTSMLSGSIQNGIAEEGLVLFNEMRQDNVHPSEYTMVSVLAACAMLGGLHQGRWIHGSV 249

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            KYG  +++ +  +L+ MY +  +V    RVF+ +   D V W A+   +   + P   L
Sbjct: 250 IKYGLSTNSFISASLLDMYAKCEKVEDARRVFDELEFVDIVLWTAMIVGYTQNKRPLDAL 309

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           ++F         PN  T   ++ A + L  +  G+ +HA  +K     + VV  +LVDMY
Sbjct: 310 QLFLHKKFVSIVPNSVTIATVISASAQLRHLPLGRSVHAIGVKLGTMESDVVRNALVDMY 369

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K   L +A   F  +  KD+ A+ +++  Y++ G A  +L  F +MR++GI  +  ++ 
Sbjct: 370 AKCQALPEANSIFGRILIKDVVAWNSMMAGYSENGMANESLVLFNRMRMQGISPDAISVV 429

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           + L+ C  +A L  G+  H+ A+K   + +++V+TAL+ +Y+KC  +  A+ VF     R
Sbjct: 430 NALSACVCLADLHIGKGFHTYAIKYAFMSNIYVNTALLNLYSKCADLPSAQRVFNDMTDR 489

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           ++ +W+ MIGGY   G    +++ F  ML E   P+E+ F  +LSACSH G++  GK++F
Sbjct: 490 NSVTWSAMIGGYGMQGDSAGSIDLFNEMLKENIHPNEVVFTSILSACSHTGMVTAGKEYF 549

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            S+ + + ITP++KH+ACM+D++ RAG   E   FI    +     VW + L  C  H  
Sbjct: 550 DSMARHFNITPSMKHYACMVDVMARAGNLEEALEFIQNMPIKAGISVWGSFLHGCKLHSR 609

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCS 595
           +E  E+  +K+  L P+    YV  S++  + GRW+    +R  +  QG+ K P CS
Sbjct: 610 LEFGEEAIKKMAALHPETPDFYVLMSNLYTSYGRWDKSQTIRRWMQEQGLVKLPGCS 666



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/465 (27%), Positives = 236/465 (50%), Gaps = 4/465 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A++VF  +PE NVVSW ++L+G  ++G  ++ + LF  M+      S++++ +VL  
Sbjct: 173 LENARKVFDRVPERNVVSWTSMLSGSIQNGIAEEGLVLFNEMRQDNVHPSEYTMVSVLAA 232

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A  G +  G+ +H   I+ G + + F+S SL+DMY+KC   ++A +VF  ++  D+V W
Sbjct: 233 CAMLGGLHQGRWIHGSVIKYGLSTNSFISASLLDMYAKCEKVEDARRVFDELEFVDIVLW 292

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    Q     +A ++F   +  S+ PN   + +++ A+ +      G S+HA+  K
Sbjct: 293 TAMIVGYTQNKRPLDALQLFLHKKFVSIVPNSVTIATVISASAQLRHLPLGRSVHAIGVK 352

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G     +V NALV MY +   +   + +F  I  +D V+WN++ + + +    ++ L +
Sbjct: 353 LGTMESDVVRNALVDMYAKCQALPEANSIFGRILIKDVVAWNSMMAGYSENGMANESLVL 412

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M ++G  P+  + +  L AC  L+D+  GK  H + IK++   N  V T+L+++Y K
Sbjct: 413 FNRMRMQGISPDAISVVNALSACVCLADLHIGKGFHTYAIKYAFMSNIYVNTALLNLYSK 472

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
              L  A   F+ + +++   ++A+I  Y   G++  ++  F +M  E I  NE    S 
Sbjct: 473 CADLPSAQRVFNDMTDRNSVTWSAMIGGYGMQGDSAGSIDLFNEMLKENIHPNEVVFTSI 532

Query: 361 LNGCSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
           L+ CS    +  G+    S+A        M     +V + A+ G++++A    +   ++ 
Sbjct: 533 LSACSHTGMVTAGKEYFDSMARHFNITPSMKHYACMVDVMARAGNLEEALEFIQNMPIKA 592

Query: 420 TAS-WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
             S W   + G   H   E   EA + M      P+   F V++S
Sbjct: 593 GISVWGSFLHGCKLHSRLEFGEEAIKKM--AALHPETPDFYVLMS 635


>gi|297819542|ref|XP_002877654.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323492|gb|EFH53913.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1112

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 207/606 (34%), Positives = 330/606 (54%), Gaps = 12/606 (1%)

Query: 4   AKRVFKSMPEL---NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           AK VF++M      +VVSW+A++  +  +G     + LF    +M    + +  + V++ 
Sbjct: 116 AKDVFETMGRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLEMGLVPNDYCYTAVIRA 175

Query: 61  FANSGYIKAGQVVHAMAIRLG-CALDKFLSCSLVDMYSKCGLA-DNALKVFYRIKDPDVV 118
            +NS ++  G+V+    ++ G    D  + CSL+DM+ K   + +NA KVF ++ + +VV
Sbjct: 176 CSNSDFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVV 235

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            W  +IT   Q G  +EA + F  M  S  + ++F L+S+  A  E  +   G  +H+  
Sbjct: 236 TWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGRQLHSWA 295

Query: 179 CKYGFESDTLVGNALVSMYME---NGRVSYGSRVFEAIAHQDSVSWNALFSRF-QDYESP 234
            + G   D  V  +LV MY +   +G V    +VF+ +     +SW AL + + Q+    
Sbjct: 296 IRSGLADD--VECSLVDMYAKCSADGSVDDCRKVFDRMQDHSVMSWTALITGYMQNCNLA 353

Query: 235 DQGLRIFYQMLLKG-FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
            + + +F +M+ +G  +PN  TF    KAC ++SD   GKQ+  H  K  L  N  V  S
Sbjct: 354 TEAINLFSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGKQVLGHAFKRGLASNSSVSNS 413

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           ++ M+ K   +EDA  AF+SL+ K+L +Y   +    +  + E A +   ++    +  +
Sbjct: 414 VISMFVKCDRMEDARTAFESLSEKNLVSYNTFLDGTCRNLDFEHAFELLSEIAERELGVS 473

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
            FT AS L+G + V +L  G  +HS  +K G   +  V  AL++MY+KCGSID A  VF 
Sbjct: 474 AFTFASLLSGVANVGSLRKGEQIHSQVLKLGLSCNQPVCNALISMYSKCGSIDTASRVFS 533

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
               R+  SW  MI G+ KHG  E+ LE F  M  EG  P+E+T+V +LSACSH+GL+ E
Sbjct: 534 LMDNRNVISWTSMITGFAKHGFAERVLETFNQMTKEGVKPNEVTYVAILSACSHVGLVSE 593

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           G +HF+S+ + + I P ++H+ACM+D+L RAG  T+   FI       + LVW   LGAC
Sbjct: 594 GWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGAC 653

Query: 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPS 593
             H N EL +  A K+LE +P   + Y+  S+I A+ G+W + + +R  +  + + KE  
Sbjct: 654 RVHSNTELGKLAARKILEFDPNEPAAYIQLSNIYASAGKWEESTEMRRKMKERNLVKEGG 713

Query: 594 CSWIEV 599
           CSWIEV
Sbjct: 714 CSWIEV 719



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 142/536 (26%), Positives = 258/536 (48%), Gaps = 23/536 (4%)

Query: 43  KDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLA 102
           +D  +     + S++LK    + + + G++VHA  I      D  L  SL+ +YSK G  
Sbjct: 54  RDGIRPMDSVTFSSLLKSCIRARHFRLGKLVHARLIEFEIEPDSVLYNSLISLYSKSGDL 113

Query: 103 DNALKVFY---RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLV 159
             A  VF    R    DVV+W A++ C    G   +A K+F    E  + PN +  T+++
Sbjct: 114 TKAKDVFETMGRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLEMGLVPNDYCYTAVI 173

Query: 160 RATTETGDQRCGESIHAVICKYG-FESDTLVGNALVSMYMENGRVSYGS--RVFEAIAHQ 216
           RA + +     G  I   + K G FESD  VG +L+ M+++ G  S+ +  +VF+ ++  
Sbjct: 174 RACSNSDFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVK-GENSFENAYKVFDKMSEL 232

Query: 217 DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLH 276
           + V+W  + +R      P + +R F  M+L GF+ +  T   +  AC+ L ++  G+QLH
Sbjct: 233 NVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGRQLH 292

Query: 277 AHTIKHSLDGNHVVGTSLVDMYDK---SGCLEDAGVAFDSLANKDLFAYTAIITSYAQ-A 332
           +  I+  L  +  V  SLVDMY K    G ++D    FD + +  + ++TA+IT Y Q  
Sbjct: 293 SWAIRSGLADD--VECSLVDMYAKCSADGSVDDCRKVFDRMQDHSVMSWTALITGYMQNC 350

Query: 333 GEAEMALKCFRKMRLEG-IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFV 391
             A  A+  F +M  +G ++ N FT +S    C  V+    G+ +   A K G   +  V
Sbjct: 351 NLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGKQVLGHAFKRGLASNSSV 410

Query: 392 STALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGY 451
           S ++++M+ KC  ++DA   F+  + ++  S+N  + G  ++   E A E    + +   
Sbjct: 411 SNSVISMFVKCDRMEDARTAFESLSEKNLVSYNTFLDGTCRNLDFEHAFELLSEIAEREL 470

Query: 452 VPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIE 511
                TF  +LS  +++G + +G++  S + K+ G++        +I +  + G      
Sbjct: 471 GVSAFTFASLLSGVANVGSLRKGEQIHSQVLKL-GLSCNQPVCNALISMYSKCGSIDTAS 529

Query: 512 NFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
              +      N + W +++   + HG        AE++LE   +M    V P++++
Sbjct: 530 RVFSLMD-NRNVISWTSMITGFAKHGF-------AERVLETFNQMTKEGVKPNEVT 577



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 138/474 (29%), Positives = 231/474 (48%), Gaps = 21/474 (4%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E A +VF  M ELNVV+W  ++    + G  ++ +  F  M     +  KF+LS+V    
Sbjct: 220 ENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSAC 279

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKC---GLADNALKVFYRIKDPDVV 118
           A    +  G+ +H+ AIR G A D  + CSLVDMY+KC   G  D+  KVF R++D  V+
Sbjct: 280 AELENLSLGRQLHSWAIRSGLADD--VECSLVDMYAKCSADGSVDDCRKVFDRMQDHSVM 337

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRE----SSVKPNQFVLTSLVRATTETGDQRCGESI 174
           +W A+IT   Q   C  A +  NL  E      V+PN F  +S  +A     D R G+ +
Sbjct: 338 SWTALITGYMQN--CNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGKQV 395

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS---RFQDY 231
                K G  S++ V N+++SM+++  R+      FE+++ ++ VS+N       R  D+
Sbjct: 396 LGHAFKRGLASNSSVSNSVISMFVKCDRMEDARTAFESLSEKNLVSYNTFLDGTCRNLDF 455

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
           E       +  ++  +    +  TF  +L   +++  +  G+Q+H+  +K  L  N  V 
Sbjct: 456 E---HAFELLSEIAERELGVSAFTFASLLSGVANVGSLRKGEQIHSQVLKLGLSCNQPVC 512

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
            +L+ MY K G ++ A   F  + N+++ ++T++IT +A+ G AE  L+ F +M  EG+K
Sbjct: 513 NALISMYSKCGSIDTASRVFSLMDNRNVISWTSMITGFAKHGFAERVLETFNQMTKEGVK 572

Query: 352 SNEFTLASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
            NE T  + L+ CS V  ++ G R  +S+         M     +V +  + G + DA  
Sbjct: 573 PNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFE 632

Query: 411 VFKGSALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
                  + D   W   +G    H   E    A R +L+  + P+E    + LS
Sbjct: 633 FINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILE--FDPNEPAAYIQLS 684



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 107/357 (29%), Positives = 188/357 (52%), Gaps = 13/357 (3%)

Query: 131 GCCQEAAKIFNLMRESSVKP-NQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
           G  + A    +LM    ++P +    +SL+++       R G+ +HA + ++  E D+++
Sbjct: 40  GDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARHFRLGKLVHARLIEFEIEPDSVL 99

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAH---QDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
            N+L+S+Y ++G ++    VFE +     +D VSW+A+ + F +       +++F + L 
Sbjct: 100 YNSLISLYSKSGDLTKAKDVFETMGRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLE 159

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS-LDGNHVVGTSLVDMYDK-SGCL 304
            G  PN   +  +++ACS+   VG G+ +    +K    + +  VG SL+DM+ K     
Sbjct: 160 MGLVPNDYCYTAVIRACSNSDFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSF 219

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
           E+A   FD ++  ++  +T +IT   Q G    A++ F  M L G +S++FTL+S  + C
Sbjct: 220 ENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSAC 279

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC---GSIDDAEAVFKGSALRDTA 421
           + +  L+ GR LHS A+++G   D  V  +LV MYAKC   GS+DD   VF         
Sbjct: 280 AELENLSLGRQLHSWAIRSGLADD--VECSLVDMYAKCSADGSVDDCRKVFDRMQDHSVM 337

Query: 422 SWNMMIGGYVKH-GLGEKALEAFRMMLDEGYV-PDEITFVVVLSACSHMGLIEEGKK 476
           SW  +I GY+++  L  +A+  F  M+ +G+V P+  TF     AC ++     GK+
Sbjct: 338 SWTALITGYMQNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGKQ 394



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 95/166 (57%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A+  F+S+ E N+VS+N  L+G   + D +    L   + + E   S F+ +++L G
Sbjct: 424 MEDARTAFESLSEKNLVSYNTFLDGTCRNLDFEHAFELLSEIAERELGVSAFTFASLLSG 483

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            AN G ++ G+ +H+  ++LG + ++ +  +L+ MYSKCG  D A +VF  + + +V++W
Sbjct: 484 VANVGSLRKGEQIHSQVLKLGLSCNQPVCNALISMYSKCGSIDTASRVFSLMDNRNVISW 543

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
            ++IT   + G  +   + FN M +  VKPN+    +++ A +  G
Sbjct: 544 TSMITGFAKHGFAERVLETFNQMTKEGVKPNEVTYVAILSACSHVG 589



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 63/124 (50%), Gaps = 6/124 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A RVF  M   NV+SW +++ G+A+ G  ++V+  F  M     K ++ +   +L  
Sbjct: 525 IDTASRVFSLMDNRNVISWTSMITGFAKHGFAERVLETFNQMTKEGVKPNEVTYVAILSA 584

Query: 61  FANSGYIKAG-QVVHAMA--IRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPD 116
            ++ G +  G +  ++M    ++   ++ + +C +VD+  + GL  +A +    +    D
Sbjct: 585 CSHVGLVSEGWRHFNSMYEDHKIKPKMEHY-AC-MVDLLCRAGLLTDAFEFINTMPFQAD 642

Query: 117 VVAW 120
           V+ W
Sbjct: 643 VLVW 646


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 192/599 (32%), Positives = 331/599 (55%), Gaps = 9/599 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+  F ++   N  SW ++L  YA++G  +  + L+   K M+ + +    +TVL   A+
Sbjct: 77  ARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLY---KRMDLQPNPVVYTTVLGACAS 133

Query: 64  SGYIKAGQVVHA-MAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVVAWG 121
              ++ G+ +H+ ++   G  LD  L  SL+ MY+KCG  ++A ++F R+     V +W 
Sbjct: 134 IEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWN 193

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           A+I    Q G  +EA +++  M    V+P+    TS++ A +  G    G  IHA+I   
Sbjct: 194 AMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSR 250

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G E D  + NAL++MY     +   +++F+ +  +D VSW+A+ + F + +  D+ +  +
Sbjct: 251 GTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFY 310

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M L+G +PN  TF  +L AC+S+ D+  G+ +H   + +      V GT+LVD+Y   
Sbjct: 311 SKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSY 370

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR-LEGIKSNEFTLASC 360
           G L++A   FD + N+D   +T +I  Y++ G     L+ +R+M+    + + +   +  
Sbjct: 371 GSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCV 430

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           ++ C+ +   A+ R  HS     G + D  ++T+LV MY++ G+++ A  VF   + RDT
Sbjct: 431 ISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDT 490

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            +W  +I GY KHG    AL  ++ M  EG  P E+TF+VVL ACSH GL E+GK+ F S
Sbjct: 491 LAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFIS 550

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           I+  Y + P I H++C+ID+L RAG+ ++ E  I    + PN + W +LLGA   H +++
Sbjct: 551 IQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVK 610

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
                A ++ +L+P   ++YV  S++ A  G     + VR  + ++G+KK    SWIEV
Sbjct: 611 RATHAAGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEV 669



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 135/484 (27%), Positives = 245/484 (50%), Gaps = 18/484 (3%)

Query: 87  FLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRES 146
           FL   +V  Y KCG   +A   F  I   +  +WG+++T   Q G  + A  ++  M   
Sbjct: 59  FLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM--- 115

Query: 147 SVKPNQFVLTSLVRATTETGDQRCGESIHAVIC-KYGFESDTLVGNALVSMYMENGRVSY 205
            ++PN  V T+++ A         G++IH+ I    G + D ++ N+L++MY + G +  
Sbjct: 116 DLQPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLED 175

Query: 206 GSRVFEAIAHQDSV-SWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACS 264
             R+FE ++ + SV SWNA+ + +      ++ +R++  M     +P++ TF  +L ACS
Sbjct: 176 AKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACS 232

Query: 265 SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA 324
           +L  +  G+++HA       + +  +  +L+ MY +  CL+DA   F  L  +D+ +++A
Sbjct: 233 NLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSA 292

Query: 325 IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           +I ++A+    + A++ + KM+LEG++ N +T AS L  C+ V  L  GR +H   +  G
Sbjct: 293 MIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNG 352

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
           + + +   TALV +Y   GS+D+A ++F     RD   W ++IGGY K G     LE +R
Sbjct: 353 YKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYR 412

Query: 445 MMLDEGYVP-DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGR 503
            M +   VP  +I +  V+SAC+ +G   + ++  S I+   G+         ++++  R
Sbjct: 413 EMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEAD-GMISDFVLATSLVNMYSR 471

Query: 504 AGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFP 563
            G   E    + +   + + L W  L+   + HG   L        L L  +ME     P
Sbjct: 472 WGNL-ESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGL-------ALGLYKEMELEGAEP 523

Query: 564 SDIS 567
           S+++
Sbjct: 524 SELT 527



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 107/383 (27%), Positives = 191/383 (49%), Gaps = 19/383 (4%)

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
           ++  +GN +V  Y + G V+     F+AIA ++  SW ++ + +         L ++ +M
Sbjct: 56  ANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM 115

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAH-TIKHSLDGNHVVGTSLVDMYDKSGC 303
            L   +PN   +  +L AC+S+  +  GK +H+  +    L  + ++  SL+ MY K G 
Sbjct: 116 DL---QPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGS 172

Query: 304 LEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
           LEDA   F+ ++  + + ++ A+I +YAQ+G  E A++ +  M +E    +  T  S L+
Sbjct: 173 LEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDVE---PSVRTFTSVLS 229

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            CS +  L  GR +H++    G  LD+ +  AL+ MYA+C  +DDA  +F+    RD  S
Sbjct: 230 ACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVS 289

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSI 481
           W+ MI  + +  L ++A+E +  M  EG  P+  TF  VL AC+ +G +  G+  H   +
Sbjct: 290 WSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQIL 349

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
              Y I  T+ +   ++D+    G   E  +   + +     L W  L+G  S  G+   
Sbjct: 350 GNGYKI--TLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGL-WTVLIGGYSKQGH--- 403

Query: 542 DEKDAEKLLELEPKMESNYVFPS 564
                  +LEL  +M++    P+
Sbjct: 404 ----RTGVLELYREMKNTTKVPA 422



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 123/219 (56%), Gaps = 12/219 (5%)

Query: 260 LKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL 319
           L+ C  L  V   +Q+H   I  +   N  +G  +V  Y K G +  A VAFD++A K+ 
Sbjct: 34  LRQCQDLESV---RQIH-DRISGAASANVFLGNEIVRAYGKCGSVASARVAFDAIARKND 89

Query: 320 FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHS- 378
           +++ +++T+YAQ G    AL  +++M L+    N     + L  C+ +  L  G+ +HS 
Sbjct: 90  YSWGSMLTAYAQNGHYRAALDLYKRMDLQ---PNPVVYTTVLGACASIEALEEGKAIHSR 146

Query: 379 IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF-KGSALRDTASWNMMIGGYVKHGLGE 437
           I+   G  LD+ +  +L+ MYAKCGS++DA+ +F + S  R  +SWN MI  Y + G  E
Sbjct: 147 ISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFE 206

Query: 438 KALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
              EA R+  D    P   TF  VLSACS++GL+++G+K
Sbjct: 207 ---EAIRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRK 242



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 103/228 (45%), Gaps = 3/228 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLK 59
           ++ A+ +F  +   +   W  L+ GY++ G    V+ L+  MK+  K   +K   S V+ 
Sbjct: 373 LDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVIS 432

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             A+ G     +  H+     G   D  L+ SLV+MYS+ G  ++A +VF ++   D +A
Sbjct: 433 ACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLA 492

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH-AVI 178
           W  +I    + G    A  ++  M     +P++     ++ A +  G Q  G+ +  ++ 
Sbjct: 493 WTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQ 552

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAI-AHQDSVSWNALF 225
             Y    +    + ++ +    GR+S    +  A+    + V+W++L 
Sbjct: 553 SDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLL 600



 Score = 46.2 bits (108), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 83/171 (48%), Gaps = 13/171 (7%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A++VF  M   + ++W  L+ GYA+ G+    + L+  M+    + S+ +   VL  
Sbjct: 475 LESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYA 534

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFL---SCSLVDMYSKCGLADNALKVFYRIK-DPD 116
            +++G  + G+ +  ++I+   A+   +   SC ++D+ S+ G   +A ++   +  +P+
Sbjct: 535 CSHAGLQEQGKQLF-ISIQSDYAMHPNIAHYSC-IIDLLSRAGRLSDAEELINAMPVEPN 592

Query: 117 VVAWGAIITC----LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATT 163
            V W +++       D +     A +I  L     V P  +VL S V A T
Sbjct: 593 DVTWSSLLGASRIHKDVKRATHAAGQITKL---DPVDPASYVLLSNVHAVT 640


>gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53360, mitochondrial; Flags: Precursor
 gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana]
 gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 189/599 (31%), Positives = 320/599 (53%), Gaps = 2/599 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF  MPE N+VS+ +++ GY+++G G + + L+  M   +    +F+  +++K  A+
Sbjct: 121 AREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACAS 180

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           S  +  G+ +HA  I+L  +       +L+ MY +     +A +VFY I   D+++W +I
Sbjct: 181 SSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSI 240

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSV-KPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I    Q G   EA      M    V  PN+++  S ++A +       G  IH +  K  
Sbjct: 241 IAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSE 300

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
              + + G +L  MY   G ++   RVF+ I   D+ SWN + +   +    D+ + +F 
Sbjct: 301 LAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFS 360

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           QM   GF P+  +   +L A +    +  G Q+H++ IK     +  V  SL+ MY    
Sbjct: 361 QMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCS 420

Query: 303 CLEDAGVAFDSLANK-DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
            L      F+   N  D  ++  I+T+  Q  +    L+ F+ M +   + +  T+ + L
Sbjct: 421 DLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLL 480

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
            GC  +++L  G  +H  ++KTG   + F+   L+ MYAKCGS+  A  +F     RD  
Sbjct: 481 RGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVV 540

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SW+ +I GY + G GE+AL  F+ M   G  P+ +TFV VL+ACSH+GL+EEG K ++++
Sbjct: 541 SWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATM 600

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
           +  +GI+PT +H +C++D+L RAG+  E E FI E KL P+ +VW+ LL AC   GN+ L
Sbjct: 601 QTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHL 660

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
            +K AE +L+++P   + +V    + A+ G W + + +R+ +    +KK P  SWIE++
Sbjct: 661 AQKAAENILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWIEIE 719



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 135/449 (30%), Positives = 228/449 (50%), Gaps = 9/449 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESG-DGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           M  A RVF  +P  +++SW++++ G+++ G + + + HL   +       +++   + LK
Sbjct: 219 MSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLK 278

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             ++      G  +H + I+   A +    CSL DMY++CG  ++A +VF +I+ PD  +
Sbjct: 279 ACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTAS 338

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  II  L   G   EA  +F+ MR S   P+   L SL+ A T+      G  IH+ I 
Sbjct: 339 WNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYII 398

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-DSVSWNALFSRFQDYESPDQGL 238
           K+GF +D  V N+L++MY     +     +FE   +  DSVSWN + +    +E P + L
Sbjct: 399 KWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEML 458

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           R+F  ML+   +P+  T   +L+ C  +S +  G Q+H +++K  L     +   L+DMY
Sbjct: 459 RLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMY 518

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G L  A   FDS+ N+D+ +++ +I  YAQ+G  E AL  F++M+  GI+ N  T  
Sbjct: 519 AKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFV 578

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS--TALVAMYAKCGSIDDAEAVFKGSA 416
             L  CS V  +  G  L++  ++T H +       + +V + A+ G +++AE       
Sbjct: 579 GVLTACSHVGLVEEGLKLYA-TMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMK 637

Query: 417 LR-DTASWNMMIGGYVKHG---LGEKALE 441
           L  D   W  ++      G   L +KA E
Sbjct: 638 LEPDVVVWKTLLSACKTQGNVHLAQKAAE 666



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 155/558 (27%), Positives = 263/558 (47%), Gaps = 30/558 (5%)

Query: 44  DMEKKFSKFSLS-----TVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSK 98
           D  +K S F +      +++   ++S  +  G+ +H   +   C  D  L+  ++ MY K
Sbjct: 55  DFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGK 114

Query: 99  CGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSL 158
           CG   +A +VF  + + ++V++ ++IT   Q G   EA +++  M +  + P+QF   S+
Sbjct: 115 CGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSI 174

Query: 159 VRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDS 218
           ++A   + D   G+ +HA + K    S  +  NAL++MY+   ++S  SRVF  I  +D 
Sbjct: 175 IKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDL 234

Query: 219 VSWNALFSRFQDYESPDQGLRIFYQMLLKG-FKPNMCTFIVILKACSSLSDVGFGKQLHA 277
           +SW+++ + F       + L    +ML  G F PN   F   LKACSSL    +G Q+H 
Sbjct: 235 ISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHG 294

Query: 278 HTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEM 337
             IK  L GN + G SL DMY + G L  A   FD +   D  ++  II   A  G A+ 
Sbjct: 295 LCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADE 354

Query: 338 ALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVA 397
           A+  F +MR  G   +  +L S L   +    L+ G  +HS  +K G L D+ V  +L+ 
Sbjct: 355 AVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLT 414

Query: 398 MYAKCGSID---DAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD 454
           MY  C  +    +    F+ +A  D+ SWN ++   ++H    + L  F++ML     PD
Sbjct: 415 MYTFCSDLYCCFNLFEDFRNNA--DSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPD 472

Query: 455 EITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENF 513
            IT   +L  C  +  ++ G + H  S+K   G+ P       +ID+  + G   +    
Sbjct: 473 HITMGNLLRGCVEISSLKLGSQVHCYSLKT--GLAPEQFIKNGLIDMYAKCGSLGQARR- 529

Query: 514 ITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRW 573
           I ++    + + W  L+   +  G         E+ L L  +M+S  + P+ ++      
Sbjct: 530 IFDSMDNRDVVSWSTLIVGYAQSGF-------GEEALILFKEMKSAGIEPNHVT------ 576

Query: 574 NDFSGVRALLSSQGIKKE 591
             F GV    S  G+ +E
Sbjct: 577 --FVGVLTACSHVGLVEE 592



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 110/405 (27%), Positives = 194/405 (47%), Gaps = 3/405 (0%)

Query: 134 QEAAKIFNL-MRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
           +EA + F+   + SS K       SL+ A + +     G  IH  I     + DT++ N 
Sbjct: 48  REALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNH 107

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           ++SMY + G +     VF+ +  ++ VS+ ++ + +       + +R++ +ML +   P+
Sbjct: 108 ILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPD 167

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
              F  I+KAC+S SDVG GKQLHA  IK     + +   +L+ MY +   + DA   F 
Sbjct: 168 QFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFY 227

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI-KSNEFTLASCLNGCSPVATLA 371
            +  KDL ++++II  ++Q G    AL   ++M   G+   NE+   S L  CS +    
Sbjct: 228 GIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPD 287

Query: 372 NGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV 431
            G  +H + +K+    +     +L  MYA+CG ++ A  VF      DTASWN++I G  
Sbjct: 288 YGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLA 347

Query: 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI 491
            +G  ++A+  F  M   G++PD I+   +L A +    + +G +  S I K +G    +
Sbjct: 348 NNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIK-WGFLADL 406

Query: 492 KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
                ++ +           N   + +   +++ W  +L AC  H
Sbjct: 407 TVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQH 451


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 185/597 (30%), Positives = 329/597 (55%), Gaps = 1/597 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF+ +   +V +W  ++  Y + GD  + + +F  M++ +   +K +   +L   A+
Sbjct: 58  AQQVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACAS 117

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +  +K G  +H   ++ G   D F+  +L++MY+KCG    A   F R++  DVV+W A+
Sbjct: 118 TESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAM 177

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q      A  ++  M+   V PN+  L ++  A  +      G+ ++ ++     
Sbjct: 178 IAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVM 237

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           ESD  V N+ V+M+   G +    R+FE +  +D V+WN + + +   E+  + +R+F +
Sbjct: 238 ESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGR 297

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           +   G K N  TF+++L   +SL+ +  GK +H    +   D + VV T+L+ +Y +   
Sbjct: 298 LQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEA 357

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
              A   F  + +KD+  +T +  +YAQ G  + AL+ F++M+LEG +    TL + L+ 
Sbjct: 358 PGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDT 417

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +A L  GR +HS  ++    ++M V TAL+ MY KCG + +A +VF+  A RD   W
Sbjct: 418 CAHLAALQKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMAKRDILVW 477

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N M+G Y +HG  ++ L+ F  M  +G   D ++FV VLSA SH G + +G ++F ++ +
Sbjct: 478 NSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQ 537

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTPNALVWENLLGACSWHGNIELD 542
            + ITPT + + C++D+LGRAG+  E  + + + +   P+ ++W  LLGAC  H   +  
Sbjct: 538 DFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQA 597

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +  AE++LE +P     YV  S++ A  G W+  + +R L+ S+G+KKEP  S IE+
Sbjct: 598 KAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEI 654



 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 132/482 (27%), Positives = 243/482 (50%), Gaps = 4/482 (0%)

Query: 57  VLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD 116
           +L+  +++  +  G+ VH      G   +  +   L+ MY++CG    A +VF  ++  D
Sbjct: 10  LLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILERKD 69

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
           V AW  +I    QQG    A  +F  M+E  V P +    +++ A   T   + G  IH 
Sbjct: 70  VFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIHG 129

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
            I + GFE D  VG AL++MY + G V      F+ + H+D VSW A+ +    ++    
Sbjct: 130 QILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFAL 189

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
              ++ +M L G  PN  T   +  A    + +  GK ++       ++ +  V  S V+
Sbjct: 190 ARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESDVRVMNSAVN 249

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           M+  +G L DA   F+ + ++D+  +  +IT Y Q      A++ F +++ +G+K+N+ T
Sbjct: 250 MFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDIT 309

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
               LN  + + +LA G+++H +  + G+  D  V+TAL+++Y +C +   A  +F    
Sbjct: 310 FVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMG 369

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            +D  +W +M   Y ++G  ++AL+ F+ M  EG  P   T V VL  C+H+  +++G++
Sbjct: 370 SKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQ 429

Query: 477 -HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
            H   I+  + +   ++    +I++ G+ GK  E  + + E     + LVW ++LGA + 
Sbjct: 430 IHSHIIENRFRMEMVVE--TALINMYGKCGKMAEAMS-VFEKMAKRDILVWNSMLGAYAQ 486

Query: 536 HG 537
           HG
Sbjct: 487 HG 488



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 169/327 (51%)

Query: 149 KPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSR 208
           KP+     +L++  +   +   G  +H  +   GFE + LV   L+ MY + G V    +
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 60

Query: 209 VFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSD 268
           VFE +  +D  +W  +   +      D+ L +FYQM  +   P   T++ IL AC+S   
Sbjct: 61  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 120

Query: 269 VGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITS 328
           +  G ++H   ++   +G+  VGT+L++MY+K G +  A  +F  L ++D+ ++TA+I +
Sbjct: 121 LKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAA 180

Query: 329 YAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLD 388
             Q  +  +A   +R+M+L+G+  N+ TL +  N       L+ G+ ++ +        D
Sbjct: 181 CVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESD 240

Query: 389 MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
           + V  + V M+   G + DA  +F+    RD  +WN++I  YV++    +A+  F  +  
Sbjct: 241 VRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQ 300

Query: 449 EGYVPDEITFVVVLSACSHMGLIEEGK 475
           +G   ++ITFV++L+  + +  + +GK
Sbjct: 301 DGVKANDITFVLMLNVYTSLTSLAKGK 327



 Score = 46.6 bits (109), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 4/165 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A  VF+ M + +++ WN++L  YA+ G   + + LF  M+    K    S  +VL  
Sbjct: 459 MAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSA 518

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD--PDV 117
            ++SG +  G Q   AM           L   +VD+  + G    A+ +  ++    PD 
Sbjct: 519 LSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDG 578

Query: 118 VAWGAII-TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRA 161
           + W  ++  C       Q  A    ++         +V+ S V A
Sbjct: 579 ILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYA 623


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 192/600 (32%), Positives = 309/600 (51%), Gaps = 69/600 (11%)

Query: 71  QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
           + VHA  I+ G + + F+   L+D Y+KCG  ++  ++F ++   +V  W +++T L + 
Sbjct: 40  RCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKL 99

Query: 131 G-----------------C--------------CQEAAKIFNLMRESSVKPNQFVLTSLV 159
           G                 C              C+EA   F +M +     N++   S +
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGL 159

Query: 160 RATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSV 219
            A +   D   G  IH++I K    SD  +G+ALV MY + G V+   +VF+ +  ++ V
Sbjct: 160 SACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVV 219

Query: 220 SWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHT 279
           SWN+L + ++      + L++F  ML    +P+  T   ++ AC+SLS +  G+++HA  
Sbjct: 220 SWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARV 279

Query: 280 IK-HSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL------------------------ 314
           +K   L  + ++  + VDMY K   +++A   FDS+                        
Sbjct: 280 VKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAA 339

Query: 315 -------ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367
                  A +++ ++ A+I  Y Q GE E AL  F  ++ E +    +T A+ L  C+ +
Sbjct: 340 RLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADL 399

Query: 368 ATLANGR------LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           A L  G       L H    ++G   D+FV  +L+ MY KCG +++   VF+    RD  
Sbjct: 400 ADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCV 459

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SWN MI G+ ++G G +ALE FR MLD G  PD IT + VLSAC H G +EEG+ +FSS+
Sbjct: 460 SWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSM 519

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
            + +G+ P   H+ CM+D+LGRAG   E ++ I E  + P++++W +LL AC  H NI L
Sbjct: 520 TRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAACKVHRNITL 579

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
            +  AEKL E+E      YV  S++ A  G+W D   VR L+  +G+ K+P CSWI++ G
Sbjct: 580 GKYVAEKLFEVETSNSGPYVLLSNMYAELGKWGDAMNVRKLMRKEGVTKQPGCSWIKIPG 639



 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 132/490 (26%), Positives = 240/490 (48%), Gaps = 55/490 (11%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  +F+SMPE +  +WN++++G+A+    ++ ++ F  M       ++++ ++ L  
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSA 161

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    +  G  +H++  +  C  D ++  +LVDMYSKCG  ++A +VF  + D +VV+W
Sbjct: 162 CSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSW 221

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++ITC +Q G   EA K+F +M ES V+P++  L S++ A       + G+ +HA + K
Sbjct: 222 NSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVK 281

Query: 181 YG-FESDTLVGNALVSMYMENGRVSYGSRVFEA--------------------------- 212
                +D ++ NA V MY +  R+     +F++                           
Sbjct: 282 MDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARL 341

Query: 213 ----IAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSD 268
               +A ++ VSWNAL + +      ++ L +F  +  +   P   TF  ILKAC+ L+D
Sbjct: 342 MFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLAD 401

Query: 269 VGFGKQLHAHTIKHSL------DGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAY 322
           +  G Q H H +KH        + +  VG SL+DMY K GC+E+  + F  +  +D  ++
Sbjct: 402 LHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSW 461

Query: 323 TAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVK 382
            A+I  +AQ G    AL+ FR+M   G K +  T+   L+ C     +  GR   S   +
Sbjct: 462 NAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTR 521

Query: 383 ---TGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DTASW-----------NMMI 427
                 L D +  T +V +  + G +++A+++ +   ++ D+  W           N+ +
Sbjct: 522 DFGVAPLRDHY--TCMVDLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAACKVHRNITL 579

Query: 428 GGYVKHGLGE 437
           G YV   L E
Sbjct: 580 GKYVAEKLFE 589



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/389 (27%), Positives = 179/389 (46%), Gaps = 71/389 (18%)

Query: 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMY-----MENGR-- 202
           P   +L S ++      D RC   +HA + K GF ++  + N L+  Y     +E+GR  
Sbjct: 21  PFAKLLDSCIKLKLSAIDVRC---VHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQL 77

Query: 203 ------------------------VSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
                                   +     +F ++  +D  +WN++ S F  ++  ++ L
Sbjct: 78  FDKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEAL 137

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
             F  M  +GF  N  TF   L ACS L+D+  G Q+H+   K     +  +G++LVDMY
Sbjct: 138 YYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMY 197

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G + DA   FD + ++++ ++ ++IT Y Q G A  ALK F+ M    ++ +E TLA
Sbjct: 198 SKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLA 257

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLL-DMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           S ++ C+ ++ +  G+ +H+  VK   L  D+ +S A V MYAKC  I +A  +F    +
Sbjct: 258 SVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPI 317

Query: 418 -------------------------------RDTASWNMMIGGYVKHGLGEKALEAFRMM 446
                                          R+  SWN +I GY ++G  E+AL  F ++
Sbjct: 318 RNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLL 377

Query: 447 LDEGYVPDEITFVVVLSACS-----HMGL 470
             E   P   TF  +L AC+     H+G+
Sbjct: 378 KRESVCPTHYTFANILKACADLADLHLGM 406



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 107/233 (45%), Gaps = 47/233 (20%)

Query: 337 MALKCFRKMRLEGIKSNEFTLAS----CLNGCSPVATLA-NGRLLHSIAVKTGHLLDMFV 391
           MA K F  ++L G  S+ FT++S     L+ C  +   A + R +H+  +K+G   ++F+
Sbjct: 1   MARKIF--LKLAGDLSS-FTVSSPFAKLLDSCIKLKLSAIDVRCVHASVIKSGFSNEVFI 57

Query: 392 STALVAMYAKCGS-------------------------------IDDAEAVFKGSALRDT 420
              L+  YAKCGS                               +D+A+++F+    RD 
Sbjct: 58  QNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQ 117

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            +WN M+ G+ +H   E+AL  F MM  EG+V +E TF   LSACS +  +  G +  S 
Sbjct: 118 CTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSL 177

Query: 481 IKKIYGITPTIKHF---ACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
           I K    +P +      + ++D+  + G   + +    E     N + W +L+
Sbjct: 178 IAK----SPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMG-DRNVVSWNSLI 225


>gi|224126745|ref|XP_002319916.1| predicted protein [Populus trichocarpa]
 gi|222858292|gb|EEE95839.1| predicted protein [Populus trichocarpa]
          Length = 606

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 192/575 (33%), Positives = 317/575 (55%), Gaps = 6/575 (1%)

Query: 26  YAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALD 85
           Y +SG   + +H+  S+         F  +++L+    +     G   H+ AI+ G   D
Sbjct: 35  YCKSGSLFEAIHVLNSIDWTRLSNKPFFYASLLQTCTKAVSFTHGIQFHSHAIKSGLDTD 94

Query: 86  KFLSCSLVDMYSKCGL-ADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMR 144
           +F+  SL+ +Y K G     A +VF  +   D+++W ++IT   +    +++ ++F  M 
Sbjct: 95  RFVGNSLLALYFKLGPNLFEARRVFDGLFYKDLISWTSMITGYVKVEKPKKSLELFLEML 154

Query: 145 ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVS 204
              ++PN F L+++++A +  GD R G+  H V+   GF+ + ++  AL+ MY  N  V 
Sbjct: 155 GLGIEPNGFTLSAVIKACSGLGDLRLGKCFHGVVMVRGFDLNDVISTALIDMYGRNSAVD 214

Query: 205 YGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK-GFKPNMCTFIVILKAC 263
               VF  +   D++ W ++ S F   +  D+ L  FY M  K G  P+  TF  +L AC
Sbjct: 215 DAILVFVELPQPDAICWTSIISAFTRNDVYDKALGFFYSMCRKHGLSPDGFTFGTVLTAC 274

Query: 264 SSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYT 323
            +L  +  GK++HA  I   L GN  V +SLVDMY K   +  +   FD ++ K+L ++T
Sbjct: 275 GNLGRLKQGKEVHAKVITSGLSGNVFVESSLVDMYGKCRLVNQSQCVFDRMSVKNLVSWT 334

Query: 324 AIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKT 383
           A++  Y Q G+ E  ++ FR    EG K + ++  + L  C+ +A +  G+ +H   VK 
Sbjct: 335 ALLGGYCQNGDFESVIRIFR----EGKKVDTYSFGTVLRACAGLAAVRQGKEVHCQYVKR 390

Query: 384 GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF 443
               D+   +ALV +YAKCG ID A  +F   ++R+  +WN MI G+ ++G G +  + F
Sbjct: 391 CCWRDVVTESALVDLYAKCGCIDFAYRIFVRMSVRNLITWNSMIYGFAQNGRGGEVFQLF 450

Query: 444 RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGR 503
             M++EG  PD I+FV VL ACSH GL+++GKK+F+++ ++Y I P I+H+ CMID+LGR
Sbjct: 451 DEMIEEGIRPDYISFVGVLFACSHAGLVDQGKKYFAAMTEVYEIKPGIEHYNCMIDLLGR 510

Query: 504 AGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFP 563
           AG   E EN I          +W  LLGAC+   +    E+ A+K +EL+P    +YV+ 
Sbjct: 511 AGLLEEAENLIENANCRDEPSLWTVLLGACAASPHSATAERIAKKAVELKPDHHLSYVYL 570

Query: 564 SDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           +++    GRW+D   +R L++ +G+ K P  SWIE
Sbjct: 571 ANVYRAVGRWDDAVKIRNLMTKRGVGKMPGTSWIE 605



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/432 (25%), Positives = 217/432 (50%), Gaps = 15/432 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+RVF  +   +++SW +++ GY +    +K + LF  M  +  + + F+LS V+K  + 
Sbjct: 115 ARRVFDGLFYKDLISWTSMITGYVKVEKPKKSLELFLEMLGLGIEPNGFTLSAVIKACSG 174

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G ++ G+  H + +  G  L+  +S +L+DMY +    D+A+ VF  +  PD + W +I
Sbjct: 175 LGDLRLGKCFHGVVMVRGFDLNDVISTALIDMYGRNSAVDDAILVFVELPQPDAICWTSI 234

Query: 124 ITCLDQQGCCQEAAKIFNLM-RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I+   +     +A   F  M R+  + P+ F   +++ A    G  + G+ +HA +   G
Sbjct: 235 ISAFTRNDVYDKALGFFYSMCRKHGLSPDGFTFGTVLTACGNLGRLKQGKEVHAKVITSG 294

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
              +  V ++LV MY +   V+    VF+ ++ ++ VSW AL   +      +  +RIF 
Sbjct: 295 LSGNVFVESSLVDMYGKCRLVNQSQCVFDRMSVKNLVSWTALLGGYCQNGDFESVIRIFR 354

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +    G K +  +F  +L+AC+ L+ V  GK++H   +K     + V  ++LVD+Y K G
Sbjct: 355 E----GKKVDTYSFGTVLRACAGLAAVRQGKEVHCQYVKRCCWRDVVTESALVDLYAKCG 410

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
           C++ A   F  ++ ++L  + ++I  +AQ G      + F +M  EGI+ +  +    L 
Sbjct: 411 CIDFAYRIFVRMSVRNLITWNSMIYGFAQNGRGGEVFQLFDEMIEEGIRPDYISFVGVLF 470

Query: 363 GCSPVATLANGR-----LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
            CS    +  G+     +     +K G  ++ +    ++ +  + G +++AE + + +  
Sbjct: 471 ACSHAGLVDQGKKYFAAMTEVYEIKPG--IEHY--NCMIDLLGRAGLLEEAENLIENANC 526

Query: 418 RDTAS-WNMMIG 428
           RD  S W +++G
Sbjct: 527 RDEPSLWTVLLG 538



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 104/227 (45%), Gaps = 5/227 (2%)

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A +   +L N    AY   I  Y ++G    A+     +    + +  F  AS L  C+ 
Sbjct: 15  ASLNLKTLENPQSKAYK--IIQYCKSGSLFEAIHVLNSIDWTRLSNKPFFYASLLQTCTK 72

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG-SIDDAEAVFKGSALRDTASWNM 425
             +  +G   HS A+K+G   D FV  +L+A+Y K G ++ +A  VF G   +D  SW  
Sbjct: 73  AVSFTHGIQFHSHAIKSGLDTDRFVGNSLLALYFKLGPNLFEARRVFDGLFYKDLISWTS 132

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIY 485
           MI GYVK    +K+LE F  ML  G  P+  T   V+ ACS +G +  G K F  +  + 
Sbjct: 133 MITGYVKVEKPKKSLELFLEMLGLGIEPNGFTLSAVIKACSGLGDLRLG-KCFHGVVMVR 191

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
           G          +ID+ GR     +      E    P+A+ W +++ A
Sbjct: 192 GFDLNDVISTALIDMYGRNSAVDDAILVFVELP-QPDAICWTSIISA 237



 Score = 43.1 bits (100), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 40/71 (56%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A R+F  M   N+++WN+++ G+A++G G +V  LF  M +   +    S   VL  
Sbjct: 412 IDFAYRIFVRMSVRNLITWNSMIYGFAQNGRGGEVFQLFDEMIEEGIRPDYISFVGVLFA 471

Query: 61  FANSGYIKAGQ 71
            +++G +  G+
Sbjct: 472 CSHAGLVDQGK 482


>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
          Length = 669

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 187/603 (31%), Positives = 326/603 (54%), Gaps = 5/603 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A++VF  M + N   WN ++ GY+     +  + +F  M+        ++++ V+  
Sbjct: 68  MRYARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSA 127

Query: 61  FANSGYIK---AGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
            A    +K    G  +HA+  R+G   D F+   LV+ Y        A KVF  + + DV
Sbjct: 128 SAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVKEASKVFEEMYERDV 187

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           V+W ++I+   Q G   +  K+ + M+   + PN+  + SL+ A  +T     G  ++  
Sbjct: 188 VSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQ 247

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
           + K+G E+D  + NAL+SMY + G +S     F+A+  + + SWN L   F       + 
Sbjct: 248 VGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEA 307

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           LRIF +MLL G  P+  T + +L AC+ L ++  G  +H++   + +  ++++  SL++M
Sbjct: 308 LRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINM 367

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K G +  A   F ++  KD+ ++T ++  Y +  +  MA   F +M++  + ++E  L
Sbjct: 368 YAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMAL 427

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
            S L+ CS +  L  GR +HS   +     D+ + +ALV MYAKCG ID A  +F+    
Sbjct: 428 VSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQH 487

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLD-EGYVPDEITFVVVLSACSHMGLIEEGKK 476
           + T SWN MIGG   +G G++A+E F  ML+ +   PD IT   VL AC+H+G+++EG +
Sbjct: 488 KQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGMVDEGLR 547

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
           +F  +  + G+ P  +H+ C++D+LGRAG   E  +FI +  + PN ++W +LL AC  H
Sbjct: 548 YFYLMSSL-GVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEPNPVIWGSLLAACRVH 606

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSW 596
             ++L +   + ++ + P     +V  S++ A + +W+D   VR L+ S+GI+K P  S 
Sbjct: 607 HRMDLGKVIGQHIVNVAPNDVGVHVLVSNLHAEESQWDDVEHVRGLMGSRGIEKTPGHSS 666

Query: 597 IEV 599
           ++V
Sbjct: 667 VQV 669



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 95/217 (43%), Gaps = 18/217 (8%)

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD---AEAVFK 413
           L + L+ C+  A LA    LH   V+     D FV+  L+A+ A   +  D   A  VF 
Sbjct: 20  LLAYLDACASRAHLAE---LHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVFD 76

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE- 472
           G A  +   WN MI GY        AL  FR M   G  PD  T   V+SA +    ++ 
Sbjct: 77  GMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAGLKW 136

Query: 473 --EGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
              G    + +++I G T  +   + +++  G      E    + E     + + W +++
Sbjct: 137 RSNGDAIHALVRRI-GFTSDVFVMSGLVNYYGAFRSVKEASK-VFEEMYERDVVSWTSMI 194

Query: 531 GACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            AC+  G+        +K+L++  +M++  + P+ ++
Sbjct: 195 SACAQCGHW-------DKVLKMLSEMQAEGIIPNKVT 224


>gi|222635654|gb|EEE65786.1| hypothetical protein OsJ_21486 [Oryza sativa Japonica Group]
          Length = 749

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 191/590 (32%), Positives = 314/590 (53%), Gaps = 4/590 (0%)

Query: 15  NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVH 74
           N VSW +++  + ++G     + LF SM        +F+L + ++     G +  G+ VH
Sbjct: 99  NPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQVH 158

Query: 75  AMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQ 134
           A A++     D  +  +LV MYSK GL D+   +F RIKD D+++WG+II    QQG   
Sbjct: 159 AHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFAQQGFEM 218

Query: 135 EAAKIFN-LMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNAL 193
           EA ++F  ++ E S  PN+F   S  RA    G    GE IH +  KY  + D  VG +L
Sbjct: 219 EALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSL 278

Query: 194 VSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
             MY     +      F  I   D VSWN++ + +       + L +F +M   G +P+ 
Sbjct: 279 SDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDG 338

Query: 254 CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
            T   +L AC     +  G+ +H++ +K  LDG+  V  SL+ MY +   L  A   F  
Sbjct: 339 ITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHE 398

Query: 314 LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG 373
           + ++D+  + +I+T+ AQ    E  LK F  +       +  +L + L+  + +      
Sbjct: 399 IKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMV 458

Query: 374 RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK--GSALRDTASWNMMIGGYV 431
           + +H+ A K G + D  +S  L+  YAKCGS+DDA  +F+  G+  RD  SW+ +I GY 
Sbjct: 459 KQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNN-RDVFSWSSLIVGYA 517

Query: 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI 491
           + G  ++A + F  M   G  P+ +TF+ VL+ACS +G + EG  ++S ++  YGI PT 
Sbjct: 518 QFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYGIVPTR 577

Query: 492 KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551
           +H +C++D+L RAGK TE  NFI +    P+ ++W+ LL A   H ++E+ ++ AE +L 
Sbjct: 578 EHCSCIVDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKRAAEGILN 637

Query: 552 LEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           ++P   + YV   +I A  G WN+F+ ++  + + G+KK P  SW+++ G
Sbjct: 638 IDPSHSAAYVLLCNIYAASGNWNEFARLKKAMRTSGVKKSPGKSWVKLKG 687



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 122/444 (27%), Positives = 223/444 (50%), Gaps = 11/444 (2%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLKGFANSG 65
           +F+ + + +++SW +++ G+A+ G   + + +F  M  +     ++F   +  +     G
Sbjct: 192 LFERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVG 251

Query: 66  YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT 125
             + G+ +H ++I+     D ++ CSL DMY++C   D+A   FYRI+ PD+V+W +I+ 
Sbjct: 252 SWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVN 311

Query: 126 CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
               +G   EA  +F+ MR+S ++P+   +  L+ A         G  IH+ + K G + 
Sbjct: 312 AYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDG 371

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           D  V N+L+SMY     +S    VF  I  QD V+WN++ +    +  P++ L++F   L
Sbjct: 372 DVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLF--SL 429

Query: 246 LKGFKPNM--CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           L   +P++   +   +L A + L      KQ+HA+  K  L  + ++  +L+D Y K G 
Sbjct: 430 LNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGS 489

Query: 304 LEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
           L+DA   F+ +  N+D+F+++++I  YAQ G A+ A   F +MR  GI+ N  T    L 
Sbjct: 490 LDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLT 549

Query: 363 GCSPVATLANGRLLHSI-AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DT 420
            CS V  +  G   +SI   + G +      + +V + A+ G + +A           D 
Sbjct: 550 ACSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQMPFEPDI 609

Query: 421 ASWNMMIGGYVKHG---LGEKALE 441
             W  ++     H    +G++A E
Sbjct: 610 IMWKTLLAASKMHNDMEMGKRAAE 633



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 107/373 (28%), Positives = 175/373 (46%), Gaps = 20/373 (5%)

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           +T++GN L++MY  N                  VSW ++ +           L +F  ML
Sbjct: 85  NTVLGNHLITMYGRN-----------------PVSWASVIAAHVQNGRAGDALGLFSSML 127

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
             G   +       ++AC+ L DVG G+Q+HAH +K     + +V  +LV MY K+G ++
Sbjct: 128 RSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVD 187

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI-KSNEFTLASCLNGC 364
           D  + F+ + +KDL ++ +II  +AQ G    AL+ FR+M +EG    NEF   S    C
Sbjct: 188 DGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRAC 247

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
             V +   G  +H +++K     D++V  +L  MYA+C ++D A   F      D  SWN
Sbjct: 248 GAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWN 307

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
            ++  Y   GL  +AL  F  M D G  PD IT   +L AC     +  G+   S + K+
Sbjct: 308 SIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKL 367

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEK 544
            G+   +     ++ +  R    +   +   E K   + + W ++L AC+ H + E   K
Sbjct: 368 -GLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIK-DQDVVTWNSILTACAQHNHPEEVLK 425

Query: 545 DAEKLLELEPKME 557
               L + EP ++
Sbjct: 426 LFSLLNKSEPSLD 438



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 171/347 (49%), Gaps = 11/347 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+  F  +   ++VSWN+++N Y+  G   + + LF  M+D   +    ++  +L  
Sbjct: 288 LDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCA 347

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 +  G+++H+  ++LG   D  +  SL+ MY++C    +A+ VF+ IKD DVV W
Sbjct: 348 CVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTW 407

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +I+T   Q    +E  K+F+L+ +S    ++  L +++ A+ E G     + +HA   K
Sbjct: 408 NSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFK 467

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALFSRFQDYESPDQGLR 239
            G   D ++ N L+  Y + G +    R+FE +  ++D  SW++L   +  +    +   
Sbjct: 468 AGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEAFD 527

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS-----L 294
           +F +M   G +PN  TFI +L ACS +  V  G   + ++I     G  +V T      +
Sbjct: 528 LFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEG--CYYYSIMEPEYG--IVPTREHCSCI 583

Query: 295 VDMYDKSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALK 340
           VD+  ++G L +A    D +    D+  +  ++ +     + EM  +
Sbjct: 584 VDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKR 630



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 135/291 (46%), Gaps = 29/291 (9%)

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHS-------LDGNHVVGTSLVDMYDKSGCLEDAG 308
           +  ++ ACS L  +  G+++H H +  S       L GN V+G  L+ MY          
Sbjct: 47  YAALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMY---------- 96

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
                   ++  ++ ++I ++ Q G A  AL  F  M   G  +++F L S +  C+ + 
Sbjct: 97  -------GRNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELG 149

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
            +  GR +H+ A+K+    D+ V  ALV MY+K G +DD   +F+    +D  SW  +I 
Sbjct: 150 DVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIA 209

Query: 429 GYVKHGLGEKALEAFRMMLDEG-YVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYG 486
           G+ + G   +AL+ FR M+ EG + P+E  F     AC  +G  E G++ H  SIK  Y 
Sbjct: 210 GFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIK--YR 267

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           +   +     + D+  R              +  P+ + W +++ A S  G
Sbjct: 268 LDRDLYVGCSLSDMYARCKNLDSARVAFYRIE-APDLVSWNSIVNAYSVEG 317


>gi|242037437|ref|XP_002466113.1| hypothetical protein SORBIDRAFT_01g001570 [Sorghum bicolor]
 gi|241919967|gb|EER93111.1| hypothetical protein SORBIDRAFT_01g001570 [Sorghum bicolor]
          Length = 693

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 193/595 (32%), Positives = 308/595 (51%), Gaps = 9/595 (1%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           +F  MP  NVV+W   ++G   +G  +    +F  M +     + F+ +  L   A +G 
Sbjct: 64  LFDRMPRKNVVAWTTAISGCTRNGQPEAAAAMFADMLESGVAANDFACNAALAACAAAGA 123

Query: 67  IKA--GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
                G+ VH++A+R G A D ++   L+++YS+CG    A +VF R++ PDVV + +++
Sbjct: 124 GALSLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSMWAAEEVFRRMEAPDVVGYTSLV 183

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
           + L + G    A ++   M    ++PN+  +TS++        +  GE IH  + K    
Sbjct: 184 SALCRNGDLARAVEVLCQMMRQGLQPNEHTMTSMLAECP----RMIGEQIHGYMLKVMGS 239

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
                  AL+  Y   G       VFE +  ++ VSW ++          +  LR+F +M
Sbjct: 240 QSVYASTALIDFYSRYGDFDMAETVFENLDSKNVVSWCSMMQLCIRDGRLEDALRVFSEM 299

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
           + +  +PN   F + L AC S   V  G+Q+H   IK +L  +  V  +L+ MY +SG +
Sbjct: 300 ISEAVEPNEFAFSIALGACGS---VCLGRQIHCSAIKCNLMTDIRVSNALLSMYGRSGFV 356

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
            +       + N DL ++TA I++  Q G +E A+    +M  EG   N++  +S L+ C
Sbjct: 357 SEVEAVLGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSC 416

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
           + +A L  GR LH +A+K G    +    AL+ MY+KCG I  A   F    L D  SWN
Sbjct: 417 ADLALLDQGRQLHCLALKLGCDFKVCTGNALINMYSKCGQIGSARLAFDVMNLHDVMSWN 476

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
            +I G  +HG     LEAF  M   G+ PD+ TF+ VL  C+H GL++EG+  F  +   
Sbjct: 477 SLIHGLAQHGAANLVLEAFSEMCSSGWQPDDSTFIAVLVGCNHAGLVKEGETFFRLMTDR 536

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEK 544
           YG+TPT  H+ACMID+LGR G+F E  + I      P+ L+W+ LL +C  H N+++ + 
Sbjct: 537 YGLTPTPSHYACMIDMLGRNGRFDEALHMIKNMPFEPDVLIWKTLLASCKLHKNLDIGKL 596

Query: 545 DAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
             +KL+EL  +  ++YV  S++ A    W D   VR  +   G+KK+   SWIEV
Sbjct: 597 ATDKLMELSERDSASYVLMSNLYAMHEEWQDAERVRRRMDEIGVKKDAGWSWIEV 651



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/419 (27%), Positives = 199/419 (47%), Gaps = 11/419 (2%)

Query: 62  ANSGYIKAGQVVHAMAIRLGCAL--DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           A + ++ A     A  +RLG     D  L C  +D   K G   +AL +F R+   +VVA
Sbjct: 16  APTSHVIARPPTAAANVRLGAPPPPDVVLDCKRLDALMKSGRLSDALDLFDRMPRKNVVA 75

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQF--VLTSLVRATTETGDQRCGESIHAV 177
           W   I+   + G  + AA +F  M ES V  N F         A    G    GE +H++
Sbjct: 76  WTTAISGCTRNGQPEAAAAMFADMLESGVAANDFACNAALAACAAAGAGALSLGEQVHSL 135

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
             + GF +D  +G+ L+ +Y   G +     VF  +   D V + +L S         + 
Sbjct: 136 AVRAGFAADAWIGSCLIELYSRCGSMWAAEEVFRRMEAPDVVGYTSLVSALCRNGDLARA 195

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           + +  QM+ +G +PN  T   +L  C  +     G+Q+H + +K     +    T+L+D 
Sbjct: 196 VEVLCQMMRQGLQPNEHTMTSMLAECPRM----IGEQIHGYMLKVMGSQSVYASTALIDF 251

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y + G  + A   F++L +K++ ++ +++    + G  E AL+ F +M  E ++ NEF  
Sbjct: 252 YSRYGDFDMAETVFENLDSKNVVSWCSMMQLCIRDGRLEDALRVFSEMISEAVEPNEFAF 311

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           +  L  C  V     GR +H  A+K   + D+ VS AL++MY + G + + EAV      
Sbjct: 312 SIALGACGSVCL---GRQIHCSAIKCNLMTDIRVSNALLSMYGRSGFVSEVEAVLGKIEN 368

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            D  SW   I    ++G  EKA+     M  EG+ P++  F   LS+C+ + L+++G++
Sbjct: 369 PDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCADLALLDQGRQ 427



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 115/436 (26%), Positives = 205/436 (47%), Gaps = 11/436 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A+ VF+ M   +VV + +L++    +GD  + + + C M     + ++ +++++L  
Sbjct: 161 MWAAEEVFRRMEAPDVVGYTSLVSALCRNGDLARAVEVLCQMMRQGLQPNEHTMTSMLAE 220

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                    G+ +H   +++  +   + S +L+D YS+ G  D A  VF  +   +VV+W
Sbjct: 221 CPR----MIGEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFDMAETVFENLDSKNVVSW 276

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +++    + G  ++A ++F+ M   +V+PN+F  +  + A    G    G  IH    K
Sbjct: 277 CSMMQLCIRDGRLEDALRVFSEMISEAVEPNEFAFSIALGA---CGSVCLGRQIHCSAIK 333

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS-RFQDYESPDQGLR 239
               +D  V NAL+SMY  +G VS    V   I + D VSW A  S  FQ+  S ++ + 
Sbjct: 334 CNLMTDIRVSNALLSMYGRSGFVSEVEAVLGKIENPDLVSWTAAISANFQNGFS-EKAVA 392

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +  QM  +GF PN   F   L +C+ L+ +  G+QLH   +K   D     G +L++MY 
Sbjct: 393 LLLQMHSEGFTPNDYAFSSGLSSCADLALLDQGRQLHCLALKLGCDFKVCTGNALINMYS 452

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G +  A +AFD +   D+ ++ ++I   AQ G A + L+ F +M   G + ++ T  +
Sbjct: 453 KCGQIGSARLAFDVMNLHDVMSWNSLIHGLAQHGAANLVLEAFSEMCSSGWQPDDSTFIA 512

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA-LVAMYAKCGSIDDAEAVFKGSALR 418
            L GC+    +  G     +      L       A ++ M  + G  D+A  + K     
Sbjct: 513 VLVGCNHAGLVKEGETFFRLMTDRYGLTPTPSHYACMIDMLGRNGRFDEALHMIKNMPFE 572

Query: 419 -DTASWNMMIGGYVKH 433
            D   W  ++     H
Sbjct: 573 PDVLIWKTLLASCKLH 588


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 181/544 (33%), Positives = 296/544 (54%), Gaps = 3/544 (0%)

Query: 61  FANSGYIKA---GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
           F   G IK+   G++ H    R      +FL  S++ MY KCG   +A KVF  +++ ++
Sbjct: 17  FEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLADARKVFDEMRERNL 76

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           V+W  II+   + G   +   +F+ M E   KPN       +R+         G+ IH+ 
Sbjct: 77  VSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNPSGLEIGKQIHSH 136

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
             + G  S+  V  A+ +MY++ G +     VFE ++ +++V+W  +   +   E     
Sbjct: 137 AIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQAERQMDA 196

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           L +F +M+ +G + +   F ++LKAC+ L ++ FG+Q+H H +K  L+    VGT LVD 
Sbjct: 197 LALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDF 256

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K   LE A  AF+ ++  +  +++A+IT Y Q GE E ALK F  +R   +  N FT 
Sbjct: 257 YVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDINSFTY 316

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
            S    CS +A   +G   H+ A+K+  +      +A++ MY++CG +D A  VF+    
Sbjct: 317 TSIFQACSALADFNSGAQAHADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFESIDD 376

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
            D  +W  +I GY   G   +AL+ FR M D G  P+ +TF+ VL+ACSH GL+ EG+++
Sbjct: 377 PDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGVRPNAVTFIAVLTACSHSGLVIEGRQY 436

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
             S+   YG+  TI H+ CM+DI  RAG   E    I     +P+A+ W+ LLG C  + 
Sbjct: 437 LESMSSNYGVATTIDHYDCMVDIYSRAGFLQEALELIRSMPFSPDAMSWKCLLGGCWTYR 496

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           N+E+ E  AE L +L+P+  + Y+   ++ A+ G+W + + VR +++ + ++KE SCSWI
Sbjct: 497 NLEIGELAAENLFQLDPEDTAGYILMFNLYASFGKWKEAANVRKMMAERNLRKELSCSWI 556

Query: 598 EVDG 601
            V G
Sbjct: 557 TVKG 560



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 143/510 (28%), Positives = 252/510 (49%), Gaps = 14/510 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF  M E N+VSWN +++ YAE+G   K   +F +M ++E K +  +    L+   N
Sbjct: 64  ARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLN 123

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ G+ +H+ AIR G   +  ++ ++ +MY KCG  + A  VF ++ + + VAW  I
Sbjct: 124 PSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGI 183

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    Q     +A  +F  M    V+ +++V + +++A     +   G  IH  I K G 
Sbjct: 184 MVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGL 243

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           ES+  VG  LV  Y++   +   ++ FE I+  + VSW+AL + +      ++ L+ F  
Sbjct: 244 ESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFES 303

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           +  +    N  T+  I +ACS+L+D   G Q HA  IK SL       ++++ MY + G 
Sbjct: 304 LRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHGESAMITMYSRCGR 363

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L+ A   F+S+ + D  A+TAII  YA  G A  ALK FR+M+  G++ N  T  + L  
Sbjct: 364 LDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGVRPNAVTFIAVLTA 423

Query: 364 CSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DTA 421
           CS    +  GR  L S++   G    +     +V +Y++ G + +A  + +      D  
Sbjct: 424 CSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQEALELIRSMPFSPDAM 483

Query: 422 SWNMMIGG---YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           SW  ++GG   Y    +GE A E    +  E    D   ++++ +  +  G  +E     
Sbjct: 484 SWKCLLGGCWTYRNLEIGELAAENLFQLDPE----DTAGYILMFNLYASFGKWKEA---- 535

Query: 479 SSIKKIYGITPTIKHFAC-MIDILGRAGKF 507
           ++++K+       K  +C  I + G+  +F
Sbjct: 536 ANVRKMMAERNLRKELSCSWITVKGKVHRF 565



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 160/313 (51%), Gaps = 11/313 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ VF+ M E N V+W  ++ GY ++      + LF  M +   +  ++  S VLK 
Sbjct: 162 LEGAELVFEKMSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKA 221

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    +  G+ +H   ++LG   +  +   LVD Y KC   ++A K F  I +P+ V+W
Sbjct: 222 CAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSW 281

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+IT   Q G  +EA K F  +R  SV  N F  TS+ +A +   D   G   HA   K
Sbjct: 282 SALITGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIK 341

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
               +     +A+++MY   GR+ Y +RVFE+I   D+V+W A+ + +    +  + L++
Sbjct: 342 SSLVAYQHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKL 401

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS------L 294
           F +M   G +PN  TFI +L ACS    V  G+Q        S+  N+ V T+      +
Sbjct: 402 FRRMQDCGVRPNAVTFIAVLTACSHSGLVIEGRQY-----LESMSSNYGVATTIDHYDCM 456

Query: 295 VDMYDKSGCLEDA 307
           VD+Y ++G L++A
Sbjct: 457 VDIYSRAGFLQEA 469



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 136/298 (45%), Gaps = 8/298 (2%)

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
           ++  + +AC  +  +  G+  H    +   +    +  S++ MY K G L DA   FD +
Sbjct: 12  SYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLADARKVFDEM 71

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
             ++L ++  II++YA+ G  +     F  M     K N  T    L      + L  G+
Sbjct: 72  RERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNPSGLEIGK 131

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
            +HS A+++G   +  V+TA+  MY KCG ++ AE VF+  + ++  +W  ++ GY +  
Sbjct: 132 QIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQAE 191

Query: 435 LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHF 494
               AL  F  M++EG   DE  F +VL AC+ +  +  G++    I K+ G+   +   
Sbjct: 192 RQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKL-GLESEVSVG 250

Query: 495 ACMIDILGRAGKF---TEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKL 549
             ++D   +       T+   +I+E    PN + W  L+      G  E   K  E L
Sbjct: 251 TPLVDFYVKCSNLESATKAFEWISE----PNDVSWSALITGYCQMGEFEEALKTFESL 304



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 85/187 (45%), Gaps = 4/187 (2%)

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404
           M   GI  +  +       C  + +L +GRL H    +T      F+  +++ MY KCGS
Sbjct: 1   MEDAGISVSPRSYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGS 60

Query: 405 IDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
           + DA  VF     R+  SWN +I  Y ++G+ +K    F  ML+    P+  T++  L +
Sbjct: 61  LADARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRS 120

Query: 465 CSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNA 523
             +   +E GK+ H  +I+   G   ++     + ++  + G + E    + E     NA
Sbjct: 121 LLNPSGLEIGKQIHSHAIRSGLGSNASVN--TAISNMYVKCG-WLEGAELVFEKMSEKNA 177

Query: 524 LVWENLL 530
           + W  ++
Sbjct: 178 VAWTGIM 184


>gi|147805932|emb|CAN74403.1| hypothetical protein VITISV_043633 [Vitis vinifera]
          Length = 841

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 197/602 (32%), Positives = 317/602 (52%), Gaps = 24/602 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M +   +F  M   N+VSWNA+++GY + GD  K + LF  M   E KF   ++   ++ 
Sbjct: 212 MRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQA 271

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A  G +K G+ +H +AI+     D ++  +L++MYS  G  +++ ++F  + + D   W
Sbjct: 272 CAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLW 331

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC-GESIHAVIC 179
            ++I+     GC +EA  +F  M+   VK ++  +  ++    E       G+S+HA + 
Sbjct: 332 NSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVI 391

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K G   D  +GNAL+SMY E   V    ++F+ +   D +SWN +           Q   
Sbjct: 392 KSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACE 451

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F +M     KPN  T I IL AC  ++ + FG+ +H + +KHS++ N  + T+L DMY 
Sbjct: 452 LFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYM 511

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
             G    A   F+   ++DL ++ A+I       +AE                N  T+ +
Sbjct: 512 NCGDEATARDLFEGCPDRDLISWNAMIX------KAE---------------PNSVTIIN 550

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLL--DMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
            L+  + +ATL  G+ LH+   + G  L  D+ ++ A + MYA+CGS+  AE +FK    
Sbjct: 551 VLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLPK 610

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           R+  SWN MI GY  +G G  A+ AF  ML++G+ P+ +TFV VLSACSH G IE G + 
Sbjct: 611 RNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQL 670

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F S+ + + +TP + H++C++D+L R G   E   FI    + P+A VW  LL +C  + 
Sbjct: 671 FHSMVQDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRALLSSCRAYS 730

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           + +  +   EKL +LEP    NYV  S++ AT G W +   +R  L  +G++K P  SWI
Sbjct: 731 DAKQAKTIFEKLDKLEPMNAGNYVLLSNVYATAGLWLEVRRIRTWLKEKGLRKPPGISWI 790

Query: 598 EV 599
            V
Sbjct: 791 IV 792



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 129/460 (28%), Positives = 234/460 (50%), Gaps = 5/460 (1%)

Query: 19  WNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAI 78
           WN+++   A   + Q ++  +  M+ +    +  +L  VLK  A    ++ G+ +H    
Sbjct: 28  WNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSIHRSIQ 87

Query: 79  RLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAK 138
                 D  +  ++VD Y KCG  ++A  VF  + D DVV W A++      GC +EA  
Sbjct: 88  GTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAML 147

Query: 139 IFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG-FESDTLVGNALVSMY 197
           +   M   +++PN   + +L+ A     + R G  +H    + G F+S+  V  AL+  Y
Sbjct: 148 LVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFY 207

Query: 198 ME-NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTF 256
           +  + RV     +F+ +  ++ VSWNA+ S + D     + L +F QML+   K +  T 
Sbjct: 208 LRFDMRVL--PLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTM 265

Query: 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
           +V ++AC+ L  +  GKQ+H   IK     +  +  +L++MY  +G LE +   F+S+ N
Sbjct: 266 LVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPN 325

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT-LANGRL 375
           +D   + ++I++YA  G  E A+  F +M+ EG+K +E T+   L+ C  +A+ L  G+ 
Sbjct: 326 RDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKS 385

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           LH+  +K+G  +D  +  AL++MY +   ++  + +F      D  SWN MI    ++ L
Sbjct: 386 LHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTL 445

Query: 436 GEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
             +A E F  M +    P+  T + +L+AC  +  ++ G+
Sbjct: 446 RAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGR 485



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 141/540 (26%), Positives = 255/540 (47%), Gaps = 26/540 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ VF +M + +VV WNA++ GY   G  ++ M L   M     + +  ++  +L  
Sbjct: 111 VEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLA 170

Query: 61  FANSGYIKAGQVVHAMAIRLGC-ALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
              +  ++ G+ VH   +R G    +  ++ +L+  Y +  +    L +F  +   ++V+
Sbjct: 171 CEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRFDMRVLPL-LFDLMVVRNIVS 229

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W A+I+     G   +A ++F  M    VK +   +   V+A  E G  + G+ IH +  
Sbjct: 230 WNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAI 289

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K+ F  D  + NAL++MY  NG +    ++FE++ ++D+  WN++ S +  +   ++ + 
Sbjct: 290 KFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMD 349

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSL-SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           +F +M  +G K +  T +++L  C  L S +  GK LHAH IK  +  +  +G +L+ MY
Sbjct: 350 LFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRIDASLGNALLSMY 409

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            +  C+E     FD +   D+ ++  +I + A+      A + F +MR   IK N +T+ 
Sbjct: 410 TELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMRESEIKPNSYTII 469

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L  C  V  L  GR +H   +K    ++  + TAL  MY  CG    A  +F+G   R
Sbjct: 470 SILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCGDEATARDLFEGCPDR 529

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-H 477
           D  SWN MI          KA             P+ +T + VLS+ +H+  + +G+  H
Sbjct: 530 DLISWNAMI---------XKA------------EPNSVTIINVLSSFTHLATLPQGQSLH 568

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
               ++ + +   +      I +  R G     EN I +T    N + W  ++     +G
Sbjct: 569 AYVTRRGFSLGLDLSLANAFITMYARCGSLQSAEN-IFKTLPKRNIISWNAMIAGYGMNG 627



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 185/375 (49%), Gaps = 6/375 (1%)

Query: 111 RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC 170
           +IKDP    W ++I         Q     +  M    V PN   L  +++A         
Sbjct: 21  QIKDPK--HWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVER 78

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
           G+SIH  I       D  VG A+V  Y + G V     VF+A++ +D V WNA+   +  
Sbjct: 79  GKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVG 138

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL-DGNHV 289
           +   ++ + +  +M  +  +PN  T + +L AC   S++  G+ +H + +++ + D N  
Sbjct: 139 WGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPH 198

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           V T+L+  Y +   +    + FD +  +++ ++ A+I+ Y   G+   AL+ F +M ++ 
Sbjct: 199 VATALIGFYLRFD-MRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDE 257

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           +K +  T+   +  C+ + +L  G+ +H +A+K   + D+++  AL+ MY+  GS++ + 
Sbjct: 258 VKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSH 317

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM- 468
            +F+    RD   WN MI  Y   G  E+A++ F  M  EG   DE T V++LS C  + 
Sbjct: 318 QLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELA 377

Query: 469 -GLIEEGKKHFSSIK 482
            GL++    H   IK
Sbjct: 378 SGLLKGKSLHAHVIK 392



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 160/327 (48%), Gaps = 6/327 (1%)

Query: 213 IAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFG 272
           I  +D   WN++     + ++    L  + QM   G  PN  T  ++LKAC++ + V  G
Sbjct: 20  IQIKDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERG 79

Query: 273 KQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQA 332
           K +H       L  +  VGT++VD Y K G +EDA   FD+++++D+  + A++  Y   
Sbjct: 80  KSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGW 139

Query: 333 GEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL-LDMFV 391
           G  E A+   R+M  E ++ N  T+ + L  C   + L  GR +H   ++ G    +  V
Sbjct: 140 GCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHV 199

Query: 392 STALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGY 451
           +TAL+  Y +   +     +F    +R+  SWN MI GY   G   KALE F  ML +  
Sbjct: 200 ATALIGFYLRF-DMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEV 258

Query: 452 VPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEI 510
             D +T +V + AC+ +G ++ GK+ H  +IK  +     +     ++++    G   E 
Sbjct: 259 KFDCVTMLVAVQACAELGSLKLGKQIHQLAIK--FEFVEDLYILNALLNMYSNNGSL-ES 315

Query: 511 ENFITETKLTPNALVWENLLGACSWHG 537
            + + E+    +A +W +++ A +  G
Sbjct: 316 SHQLFESVPNRDAPLWNSMISAYAAFG 342


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 201/601 (33%), Positives = 324/601 (53%), Gaps = 16/601 (2%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           +F+ M E ++VSWNA +   A+SGD    + LF  M+    + ++ +L   L   A    
Sbjct: 185 LFEKM-ERDLVSWNAAIAANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVCAT--- 240

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           I+  Q +H +    G      +S +L   Y++ G    A +VF R  + DVV+W A++  
Sbjct: 241 IRQAQAIHFIVRESGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGA 300

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             Q G   EAA +F  M    + P++    +LV A+T     R G  IH    + G + D
Sbjct: 301 YAQHGHMSEAALLFARMLHEGISPSK---VTLVNASTGCSSLRFGRMIHGCALEKGLDRD 357

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
            ++GNAL+ MY   G       +F+ I   ++VSWN + +         + + +F +M L
Sbjct: 358 IVLGNALLDMYTRCGSPEEARHLFKRIP-CNAVSWNTMIAGSSQKGQMKRAVELFQRMQL 416

Query: 247 KGFKPNMCTFIVILKACSSLSD----VGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +G  P   T++ +L+A +S  +    +  G++LH+  +         +GT++V MY   G
Sbjct: 417 EGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCG 476

Query: 303 CLEDAGVAFDSLA---NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
            +++A  +F   A     D+ ++ AII+S +Q G  + AL  FR+M L G+  N+ T  +
Sbjct: 477 AIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVA 536

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL-R 418
            L+ C+  A L  G ++H     +G   ++FV+TAL +MY +CGS++ A  +F+  A+ R
Sbjct: 537 VLDACAGAAALTEGEIVHDHLRHSGMESNLFVATALASMYGRCGSLESAREIFEKVAVER 596

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D   +N MI  Y ++GL  +AL+ F  M  EG  PDE +FV VLSACSH GL +EG + F
Sbjct: 597 DVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIF 656

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            S+++ YGI P+  H+AC +D+LGRAG   + E  I    + P  LVW+ LLGAC  + +
Sbjct: 657 RSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRD 716

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           ++        + EL+P  ES YV  S+I A  G+W++ + VR  + S+G++KE   SWIE
Sbjct: 717 VDRGRLANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVRTEMESRGLRKEAGKSWIE 776

Query: 599 V 599
           +
Sbjct: 777 I 777



 Score =  232 bits (592), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 150/540 (27%), Positives = 260/540 (48%), Gaps = 16/540 (2%)

Query: 5   KRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANS 64
           + VF  +   +  SW  ++  Y E G  ++ + +F  M+    +    +   VLK  A  
Sbjct: 82  EEVFSRLEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARL 141

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
           G +  G+ +HA  +  G      L+  L+ +Y  CG   +A+ +F ++ + D+V+W A I
Sbjct: 142 GDLSQGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKM-ERDLVSWNAAI 200

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
               Q G    A ++F  M+   V+P +    +LV A T     R  ++IH ++ + G E
Sbjct: 201 AANAQSGDLGIALELFQRMQLEGVRPARI---TLVIALTVCATIRQAQAIHFIVRESGLE 257

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
              +V  AL S Y   G +     VF+  A +D VSWNA+   +  +    +   +F +M
Sbjct: 258 QTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARM 317

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
           L +G  P+  T +     CSSL    FG+ +H   ++  LD + V+G +L+DMY + G  
Sbjct: 318 LHEGISPSKVTLVNASTGCSSLR---FGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSP 374

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
           E+A   F  +   +  ++  +I   +Q G+ + A++ F++M+LEG+     T  + L   
Sbjct: 375 EEARHLFKRIPC-NAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAV 433

Query: 365 SP----VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL--- 417
           +        +A GR LHS  V  G+  +  + TA+V MYA CG+ID+A A F+  A+   
Sbjct: 434 ASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDR 493

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
            D  SWN +I    +HG G++AL  FR M   G  P++IT V VL AC+    + EG+  
Sbjct: 494 HDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGEIV 553

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
              ++   G+   +     +  + GR G          +  +  + +++  ++ A S +G
Sbjct: 554 HDHLRH-SGMESNLFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNG 612



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 144/523 (27%), Positives = 253/523 (48%), Gaps = 30/523 (5%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
           L  +L+   +   +  G+ +HA  + LG  L++ L   L+ +Y KC    +  +VF R++
Sbjct: 32  LVRLLRAAGDDRLLSQGRRIHARIVSLG--LEEELGNHLLRLYLKCESLGDVEEVFSRLE 89

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES 173
             D  +W  IIT   + G  + A  +F+ M++  V+ +     ++++A    GD   G S
Sbjct: 90  VRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRS 149

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           IHA I + G +  +++ N L+ +Y   G V+    +FE +  +D VSWNA  +   + +S
Sbjct: 150 IHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKM-ERDLVSWNAAIA--ANAQS 206

Query: 234 PDQG--LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
            D G  L +F +M L+G +P   T ++ L  C+++      + +H    +  L+   VV 
Sbjct: 207 GDLGIALELFQRMQLEGVRPARITLVIALTVCATIRQ---AQAIHFIVRESGLEQTLVVS 263

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
           T+L   Y + G L  A   FD  A +D+ ++ A++ +YAQ G    A   F +M  EGI 
Sbjct: 264 TALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIS 323

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            ++ TL +   GCS   +L  GR++H  A++ G   D+ +  AL+ MY +CGS ++A  +
Sbjct: 324 PSKVTLVNASTGCS---SLRFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHL 380

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS----H 467
           FK     +  SWN MI G  + G  ++A+E F+ M  EG  P   T++ +L A +     
Sbjct: 381 FKRIPC-NAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEE 439

Query: 468 MGLIEEGKKHFSSIKKI-YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTP--NAL 524
              + EG+K  S I    Y   P I     ++ +    G   E         +    + +
Sbjct: 440 ARAMAEGRKLHSRIVSCGYASEPAIG--TAVVKMYASCGAIDEAAASFQRGAMEDRHDVV 497

Query: 525 VWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            W  ++ + S HG+        ++ L    +M+ + V P+ I+
Sbjct: 498 SWNAIISSLSQHGH-------GKRALGFFRRMDLHGVAPNQIT 533


>gi|328774747|gb|AEB39773.1| pentatricopeptide repeat protein 43 [Funaria hygrometrica]
          Length = 1073

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 195/598 (32%), Positives = 322/598 (53%), Gaps = 3/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF ++  LN  +WNA++ GY E G  ++   LF +M+    +  KF+ +++L   A+
Sbjct: 356 ARQVFDNLRSLNRTTWNAMIAGYGE-GLMEEAFRLFRAMEQKGFQPDKFTYASLLAICAD 414

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G+ +H+     G   D  ++ +L+ MY+KCG  + A KVF ++ + +V++W A 
Sbjct: 415 RADLDRGKELHSQIASTGWQTDLTVATALISMYAKCGSPEEARKVFNQMPERNVISWNAF 474

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+C  +    +EA + F  MR   V P+     +L+ + T   D   G  IH  I ++G 
Sbjct: 475 ISCCCRHDLGKEAFQAFKQMRRDDVNPDHITFITLLNSCTSPEDLERGRYIHGKINQWGM 534

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            S+  V NAL+SMY   G ++    VF  I  +D  SWNA+ +    + +      +F +
Sbjct: 535 LSNNHVANALISMYGRCGNLADAREVFYRIRRRDLGSWNAMIAANVQHGANGSAFDLFRK 594

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
              +G K +  TFI +L+A ++L D+  G+ +H    K     +  V T+L+ MY K G 
Sbjct: 595 YRSEGGKGDKYTFINVLRAVANLEDLDAGRMIHGLVEKGGFGKDIRVLTTLIKMYSKCGS 654

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L DA   F ++  KD+  + A++ +YA +   + ALK F++M+LEG+  +  T ++ LN 
Sbjct: 655 LRDAENVFSTVQEKDVVCWNAMLAAYAHSDRGQDALKLFQQMQLEGVNPDSSTYSTALNA 714

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +  + +G+ +H+   + G   D  VS +L+ MY++CG +  A+ VF+    RD  SW
Sbjct: 715 CARLTAVEHGKKIHAQLKEAGMETDTRVSNSLIEMYSRCGCLCSAKQVFEKMLSRDINSW 774

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I GY ++G G  ALE + +ML    VP++ TF  +LS+ + +G  E+      SIKK
Sbjct: 775 NALIAGYCQNGQGNIALEYYELMLRASIVPNKATFTSILSSYAQLGEEEQAFDFLESIKK 834

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            + + P+ +H+A M+  LGRAG   E E FI E      AL+WE+LL AC  H N+EL E
Sbjct: 835 EWNMEPSEQHYAYMVAALGRAGLLKEAEEFIEEISAESAALMWESLLVACRIHLNVELAE 894

Query: 544 KDAEKLLELEPKMESNYVFP-SDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
              E LL+ + +           I A  GRW D S ++  +   G+    SC+ IEV+
Sbjct: 895 TAVEHLLDAKAQASPAVCEQLMSIYAAAGRWEDVSVLKTTMQEAGLVALKSCT-IEVN 951



 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 159/532 (29%), Positives = 280/532 (52%), Gaps = 3/532 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  VF++M + +VVSWNA+++GYA  G  Q+   LF  M+    K ++ +  ++L  
Sbjct: 151 IEDANNVFQAMEDKDVVSWNAMISGYALHGRDQEAADLFYQMQREGLKPNQNTFISILSA 210

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +   ++ G+ +H+   + G   D  +S +L++MY KCG  + A KVF  +++ +VV+W
Sbjct: 211 CQSPIALEFGEQIHSRIAKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSW 270

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I+   Q G  +EA  +F  +  S ++PN+    S++ A T   D   G  +HA I +
Sbjct: 271 TAMISGYVQHGDSREALALFRKLIRSGIQPNKVSFASILGACTNPNDLGEGLKLHAYIKQ 330

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G E + LVGNAL+SMY   G ++   +VF+ +   +  +WNA+ + + +    ++  R+
Sbjct: 331 AGLEQEVLVGNALISMYSRCGSLANARQVFDNLRSLNRTTWNAMIAGYGE-GLMEEAFRL 389

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  M  KGF+P+  T+  +L  C+  +D+  GK+LH+         +  V T+L+ MY K
Sbjct: 390 FRAMEQKGFQPDKFTYASLLAICADRADLDRGKELHSQIASTGWQTDLTVATALISMYAK 449

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G  E+A   F+ +  +++ ++ A I+   +    + A + F++MR + +  +  T  + 
Sbjct: 450 CGSPEEARKVFNQMPERNVISWNAFISCCCRHDLGKEAFQAFKQMRRDDVNPDHITFITL 509

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           LN C+    L  GR +H    + G L +  V+ AL++MY +CG++ DA  VF     RD 
Sbjct: 510 LNSCTSPEDLERGRYIHGKINQWGMLSNNHVANALISMYGRCGNLADAREVFYRIRRRDL 569

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SWN MI   V+HG    A + FR    EG   D+ TF+ VL A +++  ++ G+     
Sbjct: 570 GSWNAMIAANVQHGANGSAFDLFRKYRSEGGKGDKYTFINVLRAVANLEDLDAGRMIHGL 629

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
           ++K  G    I+    +I +  + G   + EN  + T    + + W  +L A
Sbjct: 630 VEK-GGFGKDIRVLTTLIKMYSKCGSLRDAENVFS-TVQEKDVVCWNAMLAA 679



 Score =  272 bits (695), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 153/453 (33%), Positives = 244/453 (53%), Gaps = 3/453 (0%)

Query: 85  DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMR 144
           D +L+  L+ MYSKCG  ++A  VF  ++D DVV+W A+I+     G  QEAA +F  M+
Sbjct: 134 DIYLNNMLISMYSKCGSIEDANNVFQAMEDKDVVSWNAMISGYALHGRDQEAADLFYQMQ 193

Query: 145 ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVS 204
              +KPNQ    S++ A         GE IH+ I K G+ESD  V  AL++MY + G + 
Sbjct: 194 REGLKPNQNTFISILSACQSPIALEFGEQIHSRIAKAGYESDVNVSTALINMYCKCGSLE 253

Query: 205 YGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACS 264
              +VF  +  ++ VSW A+ S +  +    + L +F +++  G +PN  +F  IL AC+
Sbjct: 254 LARKVFNEMRERNVVSWTAMISGYVQHGDSREALALFRKLIRSGIQPNKVSFASILGACT 313

Query: 265 SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA 324
           + +D+G G +LHA+  +  L+   +VG +L+ MY + G L +A   FD+L + +   + A
Sbjct: 314 NPNDLGEGLKLHAYIKQAGLEQEVLVGNALISMYSRCGSLANARQVFDNLRSLNRTTWNA 373

Query: 325 IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           +I  Y + G  E A + FR M  +G + ++FT AS L  C+  A L  G+ LHS    TG
Sbjct: 374 MIAGYGE-GLMEEAFRLFRAMEQKGFQPDKFTYASLLAICADRADLDRGKELHSQIASTG 432

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
              D+ V+TAL++MYAKCGS ++A  VF     R+  SWN  I    +H LG++A +AF+
Sbjct: 433 WQTDLTVATALISMYAKCGSPEEARKVFNQMPERNVISWNAFISCCCRHDLGKEAFQAFK 492

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA 504
            M  +   PD ITF+ +L++C+    +E G+     I + +G+         +I + GR 
Sbjct: 493 QMRRDDVNPDHITFITLLNSCTSPEDLERGRYIHGKINQ-WGMLSNNHVANALISMYGRC 551

Query: 505 GKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           G   +        +   +   W  ++ A   HG
Sbjct: 552 GNLADAREVFYRIR-RRDLGSWNAMIAANVQHG 583



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 117/366 (31%), Positives = 190/366 (51%), Gaps = 3/366 (0%)

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
           G+ +H  +    F+ D  + N L+SMY + G +   + VF+A+  +D VSWNA+ S +  
Sbjct: 119 GKKVHDHMRSAQFKPDIYLNNMLISMYSKCGSIEDANNVFQAMEDKDVVSWNAMISGYAL 178

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
           +    +   +FYQM  +G KPN  TFI IL AC S   + FG+Q+H+   K   + +  V
Sbjct: 179 HGRDQEAADLFYQMQREGLKPNQNTFISILSACQSPIALEFGEQIHSRIAKAGYESDVNV 238

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
            T+L++MY K G LE A   F+ +  +++ ++TA+I+ Y Q G++  AL  FRK+   GI
Sbjct: 239 STALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSREALALFRKLIRSGI 298

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
           + N+ + AS L  C+    L  G  LH+   + G   ++ V  AL++MY++CGS+ +A  
Sbjct: 299 QPNKVSFASILGACTNPNDLGEGLKLHAYIKQAGLEQEVLVGNALISMYSRCGSLANARQ 358

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           VF      +  +WN MI GY   GL E+A   FR M  +G+ PD+ T+  +L+ C+    
Sbjct: 359 VFDNLRSLNRTTWNAMIAGY-GEGLMEEAFRLFRAMEQKGFQPDKFTYASLLAICADRAD 417

Query: 471 IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
           ++ GK+  S I    G    +     +I +  + G   E      +     N + W   +
Sbjct: 418 LDRGKELHSQIAST-GWQTDLTVATALISMYAKCGSPEEARKVFNQMP-ERNVISWNAFI 475

Query: 531 GACSWH 536
             C  H
Sbjct: 476 SCCCRH 481



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 182/361 (50%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E A++VF  MPE NV+SWNA ++       G++    F  M+  +      +  T+L   
Sbjct: 454 EEARKVFNQMPERNVISWNAFISCCCRHDLGKEAFQAFKQMRRDDVNPDHITFITLLNSC 513

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
            +   ++ G+ +H    + G   +  ++ +L+ MY +CG   +A +VFYRI+  D+ +W 
Sbjct: 514 TSPEDLERGRYIHGKINQWGMLSNNHVANALISMYGRCGNLADAREVFYRIRRRDLGSWN 573

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           A+I    Q G    A  +F   R    K +++   +++RA     D   G  IH ++ K 
Sbjct: 574 AMIAANVQHGANGSAFDLFRKYRSEGGKGDKYTFINVLRAVANLEDLDAGRMIHGLVEKG 633

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           GF  D  V   L+ MY + G +     VF  +  +D V WNA+ + +   +     L++F
Sbjct: 634 GFGKDIRVLTTLIKMYSKCGSLRDAENVFSTVQEKDVVCWNAMLAAYAHSDRGQDALKLF 693

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            QM L+G  P+  T+   L AC+ L+ V  GK++HA   +  ++ +  V  SL++MY + 
Sbjct: 694 QQMQLEGVNPDSSTYSTALNACARLTAVEHGKKIHAQLKEAGMETDTRVSNSLIEMYSRC 753

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           GCL  A   F+ + ++D+ ++ A+I  Y Q G+  +AL+ +  M    I  N+ T  S L
Sbjct: 754 GCLCSAKQVFEKMLSRDINSWNALIAGYCQNGQGNIALEYYELMLRASIVPNKATFTSIL 813

Query: 362 N 362
           +
Sbjct: 814 S 814



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 145/283 (51%), Gaps = 5/283 (1%)

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           +G + N+  +   L+ C     +  GK++H H        +  +   L+ MY K G +ED
Sbjct: 94  RGVQANLNFYARRLQQCVLAKSLAEGKKVHDHMRSAQFKPDIYLNNMLISMYSKCGSIED 153

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A   F ++ +KD+ ++ A+I+ YA  G  + A   F +M+ EG+K N+ T  S L+ C  
Sbjct: 154 ANNVFQAMEDKDVVSWNAMISGYALHGRDQEAADLFYQMQREGLKPNQNTFISILSACQS 213

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
              L  G  +HS   K G+  D+ VSTAL+ MY KCGS++ A  VF     R+  SW  M
Sbjct: 214 PIALEFGEQIHSRIAKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAM 273

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           I GYV+HG   +AL  FR ++  G  P++++F  +L AC++   + EG K  + IK+  G
Sbjct: 274 ISGYVQHGDSREALALFRKLIRSGIQPNKVSFASILGACTNPNDLGEGLKLHAYIKQA-G 332

Query: 487 ITPTIKHFACMIDILGRAGKFTE----IENFITETKLTPNALV 525
           +   +     +I +  R G         +N  +  + T NA++
Sbjct: 333 LEQEVLVGNALISMYSRCGSLANARQVFDNLRSLNRTTWNAMI 375


>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 866

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 196/596 (32%), Positives = 320/596 (53%), Gaps = 4/596 (0%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLKGFANSG 65
           VF  M E N+ SWN L+ GYA+ G   + + L+  M  +   K   ++   VL+      
Sbjct: 151 VFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGGVKPDVYTFPCVLRTCGGIP 210

Query: 66  YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT 125
            +  G+ VH   +R G  LD  +  +L+ MY KCG   +A  +F R+   D+++W A+I+
Sbjct: 211 DLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMIS 270

Query: 126 CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
              + G   E  K+F  MR  SV P+   LTS++ A    GD+R G  IHA +   GF  
Sbjct: 271 GYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAV 330

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           D  V N+L  MY+  G      ++F  +  +D VSW  + S ++    P++ +  +  M 
Sbjct: 331 DISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMISGYEYNFLPEKAIDTYRMMD 390

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
               KP+  T   +L AC++L D+  G +LH   IK  L    +V  +L++MY K  C++
Sbjct: 391 QDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCID 450

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
            A   F ++  K++ ++T+II           AL  FR+M++  ++ N  TL + L  C+
Sbjct: 451 KALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFFRQMKMT-LQPNAITLTAALAACA 509

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
            +  L  G+ +H+  ++TG  LD F+  AL+ MY +CG ++ A   F  S  +D +SWN+
Sbjct: 510 RIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNIAWNQFN-SQKKDVSSWNI 568

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIY 485
           ++ GY + G G   +E F  M+     PDEITF+ +L  C    ++ +G  +FS +++ Y
Sbjct: 569 LLTGYSERGQGSVVVELFDRMVKARVRPDEITFISLLCGCGKSQMVRQGLMYFSKMEE-Y 627

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKD 545
           G+TP +KH+AC++D+LGRAG+  E   FI +  +TP+  VW  LL AC  H NI+L E  
Sbjct: 628 GVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHNIDLGELS 687

Query: 546 AEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           A+++ EL+      Y+   ++ A  G+W + + VR ++   G+  +  CSW+EV G
Sbjct: 688 AQRIFELDKGSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKG 743



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/425 (25%), Positives = 209/425 (49%), Gaps = 1/425 (0%)

Query: 23  LNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGC 82
           L+G   +G  ++ M L  SM+++     +     +++        + G  V+++A+    
Sbjct: 66  LHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAHEEGSKVYSVALSSMN 125

Query: 83  ALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFN- 141
           +L   L  + + M+ + G   +A  VF ++ + ++ +W  ++    +QG   EA  +++ 
Sbjct: 126 SLSVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHR 185

Query: 142 LMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENG 201
           ++    VKP+ +    ++R      D   G  +H  + +YG+E D  V NAL++MY++ G
Sbjct: 186 MLWVGGVKPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCG 245

Query: 202 RVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILK 261
            V     +F+ +  +D +SWNA+ S + +     +GL++F+ M      P++ T   ++ 
Sbjct: 246 DVKSARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVIS 305

Query: 262 ACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFA 321
           AC  L D   G+ +HA+ I      +  V  SL  MY  +G   +A   F  +  KD+ +
Sbjct: 306 ACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVS 365

Query: 322 YTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAV 381
           +T +I+ Y      E A+  +R M  + +K +E T+A+ L+ C+ +  L  G  LH +A+
Sbjct: 366 WTTMISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAI 425

Query: 382 KTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALE 441
           K   +  + V+  L+ MY+KC  ID A  +F     ++  SW  +I G   +    +AL 
Sbjct: 426 KARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALI 485

Query: 442 AFRMM 446
            FR M
Sbjct: 486 FFRQM 490



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/465 (25%), Positives = 225/465 (48%), Gaps = 5/465 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F  MP  +++SWNA+++GY E+G G + + LF +M+ +       +L++V+     
Sbjct: 250 ARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACEL 309

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G  + G+ +HA  I  G A+D  +  SL  MY   G    A K+F R+   D+V+W  +
Sbjct: 310 LGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTM 369

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+  +     ++A   + +M + SVKP++  + +++ A    GD   G  +H +  K   
Sbjct: 370 ISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARL 429

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            S  +V N L++MY +   +     +F  I  ++ +SW ++ +  +      + L  F Q
Sbjct: 430 ISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFFRQ 489

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M +   +PN  T    L AC+ +  +  GK++HAH ++  +  +  +  +L+DMY + G 
Sbjct: 490 MKMT-LQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGR 548

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +  A   F+S   KD+ ++  ++T Y++ G+  + ++ F +M    ++ +E T  S L G
Sbjct: 549 MNIAWNQFNS-QKKDVSSWNILLTGYSERGQGSVVVELFDRMVKARVRPDEITFISLLCG 607

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA-VFKGSALRDTAS 422
           C     +  G +  S   + G   ++     +V +  + G + +A   + K     D A 
Sbjct: 608 CGKSQMVRQGLMYFSKMEEYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAV 667

Query: 423 WNMMIGG-YVKHGLGEKALEAFRMM-LDEGYVPDEITFVVVLSAC 465
           W  ++    + H +    L A R+  LD+G V   I    + + C
Sbjct: 668 WGALLNACRIHHNIDLGELSAQRIFELDKGSVGYYILLCNLYADC 712


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  344 bits (883), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 217/619 (35%), Positives = 324/619 (52%), Gaps = 30/619 (4%)

Query: 10  SMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKA 69
           S+   +   WN+L+   A + + Q  +  F  M+      + F+   +LK  A    +  
Sbjct: 12  SISHKDTFHWNSLIAKNA-TQNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLP 70

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP--DVVAWGAIITCL 127
              VHA   RLG A D+F + +LVD Y KCG A  A +VF  + +   DVV+W A+I+  
Sbjct: 71  TLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAY 130

Query: 128 DQQGCCQEAAKIFNLMR-------ESSVKPNQFVLTSLVRATTETGDQRC---GESIHAV 177
              GC  EA   F  MR             +   L +LV A        C   G ++H +
Sbjct: 131 SSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGL 190

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA--HQDSVSWNALFSRFQDYESPD 235
           + KYGF   T +GN++V MY     V    RVF  I    +D VSWN+L S F      +
Sbjct: 191 VVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAE 250

Query: 236 QGLRIFYQMLLKG---FKPNMCTFIVILKACSSLSDVGFGKQLHAH-TIKHS---LDGNH 288
           + LR F  M+ +G    +PN  T I +LK+C+ L  V     +H + + +HS   +  + 
Sbjct: 251 RALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDV 310

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
           VV T+L+DM+ + G L  A   FD +  K++  ++A+I  Y Q    E AL+ FR+M +E
Sbjct: 311 VVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLME 370

Query: 349 G------IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC 402
           G      +K N  TL S +  CS +    +  ++H  AV TG   D  +++AL+ M AKC
Sbjct: 371 GNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKC 430

Query: 403 GSIDDAEAVFK--GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVV 460
           G I+    VF     + R   SW+ MIG    HG G++ALE F  M   GY P+EIT++ 
Sbjct: 431 GDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYIS 490

Query: 461 VLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLT 520
           VLSACSH GL+E+GK  F+S++K YG++PT KH+AC++D+LGRAG   E  N I    + 
Sbjct: 491 VLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIK 550

Query: 521 PNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVR 580
            +  +W +LL AC  HGN +L E   +K+L L+     ++V  +++    GRW+D   +R
Sbjct: 551 ADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRMR 610

Query: 581 ALLSSQGIKKEPSCSWIEV 599
             L   G++K P  S+IE+
Sbjct: 611 VELRRSGLRKIPGQSFIEI 629



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 92/181 (50%), Gaps = 8/181 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLF------CSMKDMEKKFSKFSL 54
           + LA+ +F  +   NVV W+A++ GY +    ++ + LF       +M  +E K +  +L
Sbjct: 326 LALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTL 385

Query: 55  STVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
            +V+   +  G  ++  ++H  A+  G   D  ++ +L+DM +KCG  ++  +VF  + +
Sbjct: 386 VSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDE 445

Query: 115 P--DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172
               VV+W ++I      G  + A ++F+ MR    +PN+    S++ A +  G    G+
Sbjct: 446 STRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGK 505

Query: 173 S 173
           S
Sbjct: 506 S 506


>gi|115476154|ref|NP_001061673.1| Os08g0375800 [Oryza sativa Japonica Group]
 gi|27260973|dbj|BAC45090.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|40253357|dbj|BAD05289.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113623642|dbj|BAF23587.1| Os08g0375800 [Oryza sativa Japonica Group]
 gi|215715200|dbj|BAG94951.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 696

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 197/602 (32%), Positives = 324/602 (53%), Gaps = 7/602 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+RVF  +P  + VSWNALL   A SG   +   L  +M       + F+L + L+  A 
Sbjct: 46  ARRVFDEVPRRDEVSWNALLAAQAASGAHPEAWRLLRAMHAQGLASNTFALGSALRSAAV 105

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +     G  + ++A++ G A + F + +L+D+Y+KCG   +A +VF  + + + V+W A+
Sbjct: 106 ARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNAL 165

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    + G    A ++F  M    + P++    SL+ A  E         +H  I KYG 
Sbjct: 166 IAGYTESGDMASALELFLEMEREGLAPDEATFASLLTAV-EGPSCFLMHQLHGKIVKYGS 224

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAH-QDSVSWNALFSRFQDYESPDQGLRIFY 242
                V NA ++ Y + G +    R+F+ I   +D +SWNA+   +      D+ ++ F 
Sbjct: 225 ALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFV 284

Query: 243 QMLLK-GFKPNMCTFIVILKACSSLS-DVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           +M+ + G  P+M +F  I+ +CS    D   G+ +H   IK +L+G   V  +L+ MY +
Sbjct: 285 RMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTR 344

Query: 301 --SGCL-EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
               C+ EDA   F+SL  KD  ++ +++T Y+Q G +  ALK FR M  E ++++E+  
Sbjct: 345 YNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAF 404

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           ++ L   S +A L  G+ +H + + +G   + FVS++L+ MY+K G IDDA   F+ +  
Sbjct: 405 SAALRSSSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADK 464

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
             +  WN MI GY +HG  E     F  ML      D ITFV ++++CSH GL++EG + 
Sbjct: 465 SSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEI 524

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
            ++++  YG+   ++H+AC +D+ GRAG+  + +  I      P+A+VW  LLGAC  HG
Sbjct: 525 LNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLLGACRIHG 584

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           N+EL    A  L   EP+  S YV  S + +  G W+D + V+ ++  +G+ K P  SWI
Sbjct: 585 NVELASDVASHLFVAEPRQHSTYVLLSSMYSGLGMWSDRATVQRVMKKRGLSKVPGWSWI 644

Query: 598 EV 599
           EV
Sbjct: 645 EV 646



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 103/227 (45%), Gaps = 2/227 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A + F S+   + VSWN++L GY++ G     +  F  M     +  +++ S  L+ 
Sbjct: 351 MEDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRS 410

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    ++ G+ +H + I  G A + F+S SL+ MYSK G+ D+A K F        V W
Sbjct: 411 SSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPW 470

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG-ESIHAVIC 179
            A+I    Q G  +    +FN M +     +      L+ + +  G    G E ++ +  
Sbjct: 471 NAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMET 530

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-DSVSWNALF 225
           KYG           V +Y   G++    ++ +++  + D++ W  L 
Sbjct: 531 KYGVPLRMEHYACGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLL 577


>gi|297597140|ref|NP_001043491.2| Os01g0600400 [Oryza sativa Japonica Group]
 gi|53791399|dbj|BAD53436.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|53793537|dbj|BAD52986.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|222618803|gb|EEE54935.1| hypothetical protein OsJ_02490 [Oryza sativa Japonica Group]
 gi|255673429|dbj|BAF05405.2| Os01g0600400 [Oryza sativa Japonica Group]
          Length = 348

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 163/334 (48%), Positives = 231/334 (69%), Gaps = 1/334 (0%)

Query: 268 DVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIIT 327
           D+ FG Q+HA  +K    G++ V   L+DMY ++GC  +A + FD L  +D+F++T +++
Sbjct: 2   DLRFGCQVHACVLKSGFQGDYDVSKMLLDMYVQAGCFTNARLVFDRLKERDVFSWTVVMS 61

Query: 328 SYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL 387
           +YA+  E E A++CFR M  E  + N+ TLA+ L+ CS +A L +G  LHS  +K+G   
Sbjct: 62  TYAKTDEGEKAIECFRSMLRENKRPNDATLATSLSVCSDLACLGSGLQLHSYTIKSG-WN 120

Query: 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML 447
              VS+ALV MY KCG++ DAE +F  S   D   WN +I GY +HG G KALEAF+ M+
Sbjct: 121 SSVVSSALVDMYVKCGNLADAEMLFDESDTHDLVEWNTIICGYAQHGHGYKALEAFQEMI 180

Query: 448 DEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKF 507
           DEG VPDEITFV VLSACSH GL++EG+++F  +  +YGITPT++H+ACM+DIL +AGK 
Sbjct: 181 DEGNVPDEITFVGVLSACSHAGLLDEGRRYFKLLSSVYGITPTLEHYACMVDILAKAGKL 240

Query: 508 TEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            E E+ I E  LTP+A +W+ +LGAC  HGNIE+ E+ AEKL E +P   S+ +  S+I 
Sbjct: 241 AEAESLINEMPLTPDASLWKTILGACRMHGNIEIAERAAEKLFESQPDDISSCILLSNIY 300

Query: 568 ATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           A   RWND + +R++L  +G+KKEP CSWIE++G
Sbjct: 301 ADLKRWNDVAKLRSMLVDRGVKKEPGCSWIEING 334



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/302 (33%), Positives = 148/302 (49%), Gaps = 11/302 (3%)

Query: 167 DQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS 226
           D R G  +HA + K GF+ D  V   L+ MY++ G  +    VF+ +  +D  SW  + S
Sbjct: 2   DLRFGCQVHACVLKSGFQGDYDVSKMLLDMYVQAGCFTNARLVFDRLKERDVFSWTVVMS 61

Query: 227 RFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDG 286
            +   +  ++ +  F  ML +  +PN  T    L  CS L+ +G G QLH++TIK   + 
Sbjct: 62  TYAKTDEGEKAIECFRSMLRENKRPNDATLATSLSVCSDLACLGSGLQLHSYTIKSGWNS 121

Query: 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR 346
           + VV ++LVDMY K G L DA + FD     DL  +  II  YAQ G    AL+ F++M 
Sbjct: 122 S-VVSSALVDMYVKCGNLADAEMLFDESDTHDLVEWNTIICGYAQHGHGYKALEAFQEMI 180

Query: 347 LEGIKSNEFTLASCLNGCSPVATLANGR----LLHSIAVKTGHLLDMFVSTALVAMYAKC 402
            EG   +E T    L+ CS    L  GR    LL S+   T  L        +V + AK 
Sbjct: 181 DEGNVPDEITFVGVLSACSHAGLLDEGRRYFKLLSSVYGITPTLEHY---ACMVDILAKA 237

Query: 403 GSIDDAEAVFKGSALRDTAS-WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVV 461
           G + +AE++     L   AS W  ++G    HG  E A  A   + +    PD+I+  ++
Sbjct: 238 GKLAEAESLINEMPLTPDASLWKTILGACRMHGNIEIAERAAEKLFESQ--PDDISSCIL 295

Query: 462 LS 463
           LS
Sbjct: 296 LS 297



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 140/301 (46%), Gaps = 15/301 (4%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           ++ G  VHA  ++ G   D  +S  L+DMY + G   NA  VF R+K+ DV +W  +++ 
Sbjct: 3   LRFGCQVHACVLKSGFQGDYDVSKMLLDMYVQAGCFTNARLVFDRLKERDVFSWTVVMST 62

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             +    ++A + F  M   + +PN   L + +   ++      G  +H+   K G+ S 
Sbjct: 63  YAKTDEGEKAIECFRSMLRENKRPNDATLATSLSVCSDLACLGSGLQLHSYTIKSGWNS- 121

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
           ++V +ALV MY++ G ++    +F+     D V WN +   +  +    + L  F +M+ 
Sbjct: 122 SVVSSALVDMYVKCGNLADAEMLFDESDTHDLVEWNTIICGYAQHGHGYKALEAFQEMID 181

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQL-----HAHTIKHSLDGNHVVGTSLVDMYDKS 301
           +G  P+  TF+ +L ACS    +  G++        + I  +L+        +VD+  K+
Sbjct: 182 EGNVPDEITFVGVLSACSHAGLLDEGRRYFKLLSSVYGITPTLEHY----ACMVDILAKA 237

Query: 302 GCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
           G L +A    + +    D   +  I+ +    G  E+A +   K+     +S    ++SC
Sbjct: 238 GKLAEAESLINEMPLTPDASLWKTILGACRMHGNIEIAERAAEKL----FESQPDDISSC 293

Query: 361 L 361
           +
Sbjct: 294 I 294



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 1/163 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF  + E +V SW  +++ YA++ +G+K +  F SM    K+ +  +L+T L   ++
Sbjct: 41  ARLVFDRLKERDVFSWTVVMSTYAKTDEGEKAIECFRSMLRENKRPNDATLATSLSVCSD 100

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              + +G  +H+  I+ G      +S +LVDMY KCG   +A  +F      D+V W  I
Sbjct: 101 LACLGSGLQLHSYTIKSGWN-SSVVSSALVDMYVKCGNLADAEMLFDESDTHDLVEWNTI 159

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
           I    Q G   +A + F  M +    P++     ++ A +  G
Sbjct: 160 ICGYAQHGHGYKALEAFQEMIDEGNVPDEITFVGVLSACSHAG 202


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 182/524 (34%), Positives = 304/524 (58%), Gaps = 26/524 (4%)

Query: 91  SLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKP 150
           +L+  Y+K    + A ++F  +  PD V++  +I    ++G  Q A ++F  MRE+ +  
Sbjct: 79  TLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDM 138

Query: 151 NQFVLTSLVRATTETGDQRCG------ESIHAVICKYGFESDTLVGNALVSMYMENGRVS 204
           + F L+ ++ A        CG        +HA+    G +S   VGNAL++ Y +NG + 
Sbjct: 139 DGFTLSGIITA--------CGINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLK 190

Query: 205 YGSRVFEAIAH-QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKAC 263
              R+F  ++  +D VSWN++   +  +    + L ++ +M ++G   ++ T   +L A 
Sbjct: 191 EARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAF 250

Query: 264 SSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK-SGCLEDAGVAFDSLANKDLFAY 322
           +++ D+  G Q HA  IK     N  VG+ L+D+Y K  GC+ D    FD ++N DL  +
Sbjct: 251 TNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLW 310

Query: 323 TAIITSYAQAGE-AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAV 381
             +I+ Y+   + ++ AL+CFR+++  G + ++ +L   ++ CS +++ + GR +H +A+
Sbjct: 311 NTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLAL 370

Query: 382 KTGHLLDM-----FVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
           K    LD+      V+ AL+AMY+KCG++ DA+ +F      +T S+N MI GY +HG+G
Sbjct: 371 K----LDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMG 426

Query: 437 EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFAC 496
            ++L  F+ ML+  + P  ITF+ VL+AC+H G +E+GK +F+ +K+ +GI P   HF+C
Sbjct: 427 FQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSC 486

Query: 497 MIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKM 556
           MID+LGRAGK +E E  I      P    W  LLGAC  HGN+EL  K A +LL+L+P  
Sbjct: 487 MIDLLGRAGKLSEAERLIETIPFDPGFFXWSALLGACRIHGNVELAIKAANRLLQLDPLN 546

Query: 557 ESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
            + YV  ++I +  GR  D + VR L+  +G+KK+P CSWIEV+
Sbjct: 547 AAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVN 590



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 128/465 (27%), Positives = 227/465 (48%), Gaps = 32/465 (6%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E+A ++F  MP+ + VS+N L+  YA  GD Q    LF  M++       F+LS ++  
Sbjct: 90  VEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITA 149

Query: 61  FA-NSGYIKAGQVVHAMAIRLGCALDKFLSC--SLVDMYSKCGLADNALKVFYRI-KDPD 116
              N G I+    +HA+++  G  LD ++S   +L+  YSK G    A ++F+ + +D D
Sbjct: 150 CGINVGLIRQ---LHALSVVTG--LDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRD 204

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK---PNQFVLTSLVRATTETGDQRCGES 173
            V+W +++    Q    +E +K   L  E +V+    + F L S++ A T   D   G  
Sbjct: 205 EVSWNSMVVAYMQH---REGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQ 261

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSR-VFEAIAHQDSVSWNALFSRFQDYE 232
            HA + K G+  ++ VG+ L+ +Y + G      R VF+ I++ D V WN + S +  YE
Sbjct: 262 FHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYE 321

Query: 233 S-PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-V 290
              D+ L  F Q+   G +P+ C+ + ++ ACS++S    G+Q+H   +K  +  N + V
Sbjct: 322 DLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISV 381

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
             +L+ MY K G L DA   FD++   +  +Y ++I  YAQ G    +L  F++M     
Sbjct: 382 NNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMDF 441

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHS-------IAVKTGHLLDMFVSTALVAMYAKCG 403
                T  S L  C+    + +G++  +       I  + GH       + ++ +  + G
Sbjct: 442 TPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHF------SCMIDLLGRAG 495

Query: 404 SIDDAEAVFKGSALRDT-ASWNMMIGGYVKHGLGEKALEAFRMML 447
            + +AE + +          W+ ++G    HG  E A++A   +L
Sbjct: 496 KLSEAERLIETIPFDPGFFXWSALLGACRIHGNVELAIKAANRLL 540



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 109/405 (26%), Positives = 190/405 (46%), Gaps = 37/405 (9%)

Query: 167 DQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFE--------------- 211
           D R G+S+HA+  K    + T + N  + +Y +  R+S   RVF+               
Sbjct: 23  DLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNVFSFNTLIS 82

Query: 212 --------AIAHQ--------DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCT 255
                    +AHQ        DSVS+N L + +          ++F +M       +  T
Sbjct: 83  AYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFT 142

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
              I+ AC    +VG  +QLHA ++   LD    VG +L+  Y K+G L++A   F  L+
Sbjct: 143 LSGIITACG--INVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLS 200

Query: 316 -NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
            ++D  ++ +++ +Y Q  E   AL+ + +M + G+  + FTLAS L   + V  L  G 
Sbjct: 201 EDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGL 260

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGS-IDDAEAVFKGSALRDTASWNMMIGGY-VK 432
             H+  +K+G+  +  V + L+ +Y+KCG  + D   VF   +  D   WN MI GY + 
Sbjct: 261 QFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLY 320

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK 492
             L ++ALE FR +   G+ PD+ + V V+SACS+M    +G++      K+   +  I 
Sbjct: 321 EDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRIS 380

Query: 493 HFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
               +I +  + G   + +    +T    N + + +++   + HG
Sbjct: 381 VNNALIAMYSKCGNLRDAKTLF-DTMPEHNTVSYNSMIAGYAQHG 424



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 145/334 (43%), Gaps = 57/334 (17%)

Query: 249 FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK--------------------------- 281
           F   + +F   LK C +  D+  GK LHA  IK                           
Sbjct: 4   FSSLLHSFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAAR 63

Query: 282 ----HSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEM 337
               H+ D N     +L+  Y K   +E A   FD +   D  +Y  +I +YA+ G+ + 
Sbjct: 64  RVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQP 123

Query: 338 ALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS--TAL 395
           A + F +MR   +  + FTL+  +  C     L   R LH+++V TG  LD +VS   AL
Sbjct: 124 AFQLFLEMREAFLDMDGFTLSGIITACGINVGLI--RQLHALSVVTG--LDSYVSVGNAL 179

Query: 396 VAMYAKCGSIDDAEAVFKG-SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD 454
           +  Y+K G + +A  +F   S  RD  SWN M+  Y++H  G KALE +  M   G + D
Sbjct: 180 ITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVD 239

Query: 455 EITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGK------- 506
             T   VL+A +++  +  G + H   IK  Y     +   + +ID+  + G        
Sbjct: 240 IFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVG--SGLIDLYSKCGGCMLDCRK 297

Query: 507 -FTEIENFITETKLTPNALVWENLLGACSWHGNI 539
            F EI N        P+ ++W  ++   S + ++
Sbjct: 298 VFDEISN--------PDLVLWNTMISGYSLYEDL 323


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 217/610 (35%), Positives = 316/610 (51%), Gaps = 16/610 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A++VF  M   N V+ N L+ G      G++   LF  M  M    S  S   +L  
Sbjct: 259 LSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSM-IDVSPESYVILLSS 317

Query: 61  F-----ANSGYIKAGQVVHAMAIRLGCALDKFL---SCSLVDMYSKCGLADNALKVFYRI 112
           F     A    +K G+ VH   I  G  L  F+      LV+MY+KCG   +A +VFY +
Sbjct: 318 FPEYSLAEEVGLKKGREVHGHVITTG--LVDFMVGIGNGLVNMYAKCGSIADARRVFYFM 375

Query: 113 KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172
            D D V+W ++IT LDQ GC  EA + +  MR   + P  F L S + +       + G+
Sbjct: 376 TDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQ 435

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
            IH    K G + +  V NAL+++Y E G ++   ++F ++   D VSWN++       E
Sbjct: 436 QIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSE 495

Query: 233 -SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
            S  + +  F      G K N  TF  +L A SSLS    GKQ+H   +K+++       
Sbjct: 496 RSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTE 555

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
            +L+  Y K G ++     F  +A  +D   + ++I+ Y        AL     M   G 
Sbjct: 556 NALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQ 615

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
           + + F  A+ L+  + VATL  G  +H+ +V+     D+ V +ALV MY+KCG +D A  
Sbjct: 616 RLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALR 675

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM-LDEGYVPDEITFVVVLSACSHMG 469
            F    +R++ SWN MI GY +HG GE+AL+ F  M LD    PD +TFV VLSACSH G
Sbjct: 676 FFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAG 735

Query: 470 LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENL 529
           L+EEG KHF S+   YG+ P I+HF+CM D+LGRAG+  ++E+FI +  + PN L+W  +
Sbjct: 736 LLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTV 795

Query: 530 LGACSWHG--NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQG 587
           LGAC        EL +K AE L +LEP+   NYV   ++ A  GRW D    R  +    
Sbjct: 796 LGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDAD 855

Query: 588 IKKEPSCSWI 597
           +KKE   SW+
Sbjct: 856 VKKEAGYSWV 865



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 154/547 (28%), Positives = 272/547 (49%), Gaps = 30/547 (5%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKK--FS-KFSLSTVLKG 60
           A++VF  MP  N VSW  +++GY+ +G+ ++ +     ++DM K+  FS +++  +VL+ 
Sbjct: 55  ARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVF---LRDMVKEGIFSNQYAFVSVLRA 111

Query: 61  FANSGYIKA--GQVVHAMAIRLGCALDKFLSCSLVDMYSKC-GLADNALKVFYRIKDPDV 117
               G +    G+ +H +  +L  A+D  +S  L+ MY KC G    AL  F  I+  + 
Sbjct: 112 CQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNS 171

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRA--TTETGDQRCGESIH 175
           V+W +II+   Q G  + A +IF+ M+    +P ++   SLV    +    D R  E I 
Sbjct: 172 VSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIM 231

Query: 176 AVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD 235
             I K G  +D  VG+ LVS + ++G +SY  +VF  +  +++V+ N L       +  +
Sbjct: 232 CTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGE 291

Query: 236 QGLRIFYQM-LLKGFKPNMCTFIVILKACSSLS---DVGF--GKQLHAHTIKHSLDGNHV 289
           +  ++F  M  +    P   +++++L +    S   +VG   G+++H H I   L    V
Sbjct: 292 EATKLFMDMNSMIDVSPE--SYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMV 349

Query: 290 -VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
            +G  LV+MY K G + DA   F  + +KD  ++ ++IT   Q G    A++ ++ MR  
Sbjct: 350 GIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRH 409

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
            I    FTL S L+ C+ +     G+ +H  ++K G  L++ VS AL+ +YA+ G +++ 
Sbjct: 410 DILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNEC 469

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKAL-EAFRMMLD---EGYVPDEITFVVVLSA 464
             +F      D  SWN +IG   +    E++L EA    L+    G   + ITF  VLSA
Sbjct: 470 RKIFSSMPEHDQVSWNSIIGALAR---SERSLPEAVVCFLNAQRAGQKLNRITFSSVLSA 526

Query: 465 CSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNA 523
            S +   E GK+ H  ++K       T ++   +I   G+ G+    E   +      + 
Sbjct: 527 VSSLSFGELGKQIHGLALKNNIADEATTEN--ALIACYGKCGEMDGCEKIFSRMAERRDN 584

Query: 524 LVWENLL 530
           + W +++
Sbjct: 585 VTWNSMI 591



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 131/483 (27%), Positives = 216/483 (44%), Gaps = 22/483 (4%)

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
           G+  A +  H+   +     D +L  +L++ Y + G + +A KVF  +   + V+W  I+
Sbjct: 15  GHRGAARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIV 74

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC--GESIHAVICKYG 182
           +   + G  +EA      M +  +  NQ+   S++RA  E G      G  IH ++ K  
Sbjct: 75  SGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLS 134

Query: 183 FESDTLVGNALVSMYMEN-GRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           +  D +V N L+SMY +  G V Y    F  I  ++SVSWN++ S +          RIF
Sbjct: 135 YAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIF 194

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLS--DVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
             M   G +P   TF  ++    SL+  DV   +Q+     K  L  +  VG+ LV  + 
Sbjct: 195 SSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFA 254

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR-LEGIKSNEFTLA 358
           KSG L  A   F+ +  ++      ++    +    E A K F  M  +  +    + + 
Sbjct: 255 KSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVI- 313

Query: 359 SCLNGCSPVATLA------NGRLLHSIAVKTGHLLDMFV--STALVAMYAKCGSIDDAEA 410
             L    P  +LA       GR +H   + TG L+D  V     LV MYAKCGSI DA  
Sbjct: 314 --LLSSFPEYSLAEEVGLKKGREVHGHVITTG-LVDFMVGIGNGLVNMYAKCGSIADARR 370

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           VF     +D+ SWN MI G  ++G   +A+E ++ M     +P   T +  LS+C+ +  
Sbjct: 371 VFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKW 430

Query: 471 IEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENL 529
            + G++ H  S+K   GI   +     ++ +    G   E     +      + + W ++
Sbjct: 431 AKLGQQIHGESLK--LGIDLNVSVSNALMTLYAETGYLNECRKIFSSMP-EHDQVSWNSI 487

Query: 530 LGA 532
           +GA
Sbjct: 488 IGA 490



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 109/217 (50%), Gaps = 6/217 (2%)

Query: 254 CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
           C  +  +++C  +   G  +  H+   K+ LD +  +  +L++ Y ++G    A   FD 
Sbjct: 4   CVPLSFVQSC--VGHRGAARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDE 61

Query: 314 LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLA-- 371
           +  ++  ++  I++ Y++ GE + AL   R M  EGI SN++   S L  C  + ++   
Sbjct: 62  MPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGIL 121

Query: 372 NGRLLHSIAVKTGHLLDMFVSTALVAMYAKC-GSIDDAEAVFKGSALRDTASWNMMIGGY 430
            GR +H +  K  + +D  VS  L++MY KC GS+  A   F    ++++ SWN +I  Y
Sbjct: 122 FGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVY 181

Query: 431 VKHGLGEKALEAFRMMLDEGYVPDEITF-VVVLSACS 466
            + G    A   F  M  +G  P E TF  +V +ACS
Sbjct: 182 SQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACS 218


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 189/571 (33%), Positives = 308/571 (53%), Gaps = 38/571 (6%)

Query: 64  SGYIKAGQVVHAMAIRLGCAL---DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           + Y KAG+  HA A R+  A    + F   +L+   +   L D+   +F  +   D V++
Sbjct: 49  TAYGKAGR--HARARRVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSY 106

Query: 121 GAIITCLDQQGCCQEAAKIFN-LMRE-SSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            A+I      G    A ++++ L+R  SSV+P++  ++++V A +  GD+  G   H  I
Sbjct: 107 NAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQI 166

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVF---------------------------- 210
            + GF  +  VG+ LV MY + G +    RVF                            
Sbjct: 167 LRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEAR 226

Query: 211 ---EAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLS 267
              E +  +D ++W  + + F       Q L  F +M  +G   +  TF  IL AC +LS
Sbjct: 227 RLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALS 286

Query: 268 DVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIIT 327
            +  GKQ+HA+ I+   D N  VG++LVDMY K   ++ A  AF  ++ K++ ++TA+I 
Sbjct: 287 ALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIV 346

Query: 328 SYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL 387
            Y Q G +E A++ F +M+ +GI  ++FTL S ++ C+ +A+L  G   H +A+ +G + 
Sbjct: 347 GYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMH 406

Query: 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML 447
            + VS ALV +Y KCGSI+DA  +F      D  SW  ++ GY + G  ++ ++ F  ML
Sbjct: 407 YITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKML 466

Query: 448 DEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKF 507
            +   PD +TF+ VLSACS  G +E+G  +F S++K +GI P   H+ CMID+  R+G+ 
Sbjct: 467 AKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRL 526

Query: 508 TEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            E E FI +  + P+A+ W  LL AC   G++E+ +  AE LLE++P+  ++YV    + 
Sbjct: 527 KEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNPASYVLLCSMH 586

Query: 568 ATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           AT+G WN  + +R  +  + +KKEP CSWI+
Sbjct: 587 ATKGNWNQVAQLRRGMRDRQVKKEPGCSWIK 617



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 129/515 (25%), Positives = 226/515 (43%), Gaps = 84/515 (16%)

Query: 149 KPNQFVLTSLVRATTETGDQRCGESIHAVICK-YGFESDTLVGNALVSMYMENGRVSYGS 207
           +P      +L+ A   T     G ++H VI +       T + N L++ Y + GR +   
Sbjct: 3   RPLSSQYAALLSAAARTEPHAAG-ALHCVILRTLPHPPPTHLLNHLLTAYGKAGRHARAR 61

Query: 208 RVFEAIAH-------------------------------QDSVSWNALFSRFQDYESPDQ 236
           RVF+A  H                               +D+VS+NA+ + F    +  +
Sbjct: 62  RVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHAR 121

Query: 237 GLRIFYQMLLKG--FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
            +R+++ +L  G   +P+  T   ++ A S+L D   G+Q H   ++     N  VG+ L
Sbjct: 122 AVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPL 181

Query: 295 VDMYDKSGCLEDAGVAFDS-------------------------------LANKDLFAYT 323
           V MY K G + DA   FD                                + ++D   +T
Sbjct: 182 VGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWT 241

Query: 324 AIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKT 383
            ++T + Q G    AL  FR+MR +GI  +++T  S L  C  ++ L  G+ +H+  ++T
Sbjct: 242 TMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRT 301

Query: 384 GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF 443
            +  ++FV +ALV MY+KC SI  AE  F+  + ++  SW  +I GY ++G  E+A+  F
Sbjct: 302 HYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVF 361

Query: 444 RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGR 503
             M  +G  PD+ T   V+S+C+++  +EEG + F  +  + G+   I     ++ + G+
Sbjct: 362 SEMQRDGIDPDDFTLGSVISSCANLASLEEGAQ-FHCLALVSGLMHYITVSNALVTLYGK 420

Query: 504 AGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFP 563
            G   +      E  L  + + W  L+   +  G        A++ ++L  KM +  V P
Sbjct: 421 CGSIEDAHRLFDEM-LFHDQVSWTALVTGYAQFGR-------AKETIDLFEKMLAKDVKP 472

Query: 564 SDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
             ++        F GV +  S  G   E  CS+  
Sbjct: 473 DGVT--------FIGVLSACSRAGF-VEKGCSYFH 498



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 113/456 (24%), Positives = 205/456 (44%), Gaps = 35/456 (7%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM--KDMEKKFSKFSLSTVLKGFANS 64
           +F SM + + VS+NA++ G++  G   + + L+ ++       + S+ ++S ++   +  
Sbjct: 94  LFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASAL 153

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF--------------- 109
           G    G+  H   +RLG  ++ F+   LV MY+K GL  +A +VF               
Sbjct: 154 GDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMI 213

Query: 110 ---YRIK-------------DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQF 153
               R K             D D + W  ++T   Q G   +A   F  MR   +  +Q+
Sbjct: 214 TGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQY 273

Query: 154 VLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAI 213
              S++ A         G+ IHA I +  ++ +  VG+ALV MY +   +      F  +
Sbjct: 274 TFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRM 333

Query: 214 AHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGK 273
           + ++ +SW AL   +      ++ +R+F +M   G  P+  T   ++ +C++L+ +  G 
Sbjct: 334 SCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGA 393

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
           Q H   +   L     V  +LV +Y K G +EDA   FD +   D  ++TA++T YAQ G
Sbjct: 394 QFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFG 453

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVS 392
            A+  +  F KM  + +K +  T    L+ CS    +  G    HS+    G +      
Sbjct: 454 RAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHY 513

Query: 393 TALVAMYAKCGSIDDAEAVFKGSALR-DTASWNMMI 427
           T ++ +Y++ G + +AE   K   +  D   W  ++
Sbjct: 514 TCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLL 549



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 154/308 (50%), Gaps = 1/308 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+R+F+ M + + ++W  ++ G+ ++G   + ++ F  M+       +++  ++L  
Sbjct: 222 VEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTA 281

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 ++ G+ +HA  IR     + F+  +LVDMYSKC     A   F R+   ++++W
Sbjct: 282 CGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISW 341

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    Q GC +EA ++F+ M+   + P+ F L S++ +         G   H +   
Sbjct: 342 TALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALV 401

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G      V NALV++Y + G +    R+F+ +   D VSW AL + +  +    + + +
Sbjct: 402 SGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDL 461

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFG-KQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           F +ML K  KP+  TFI +L ACS    V  G    H+    H +       T ++D+Y 
Sbjct: 462 FEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYS 521

Query: 300 KSGCLEDA 307
           +SG L++A
Sbjct: 522 RSGRLKEA 529


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 187/598 (31%), Positives = 323/598 (54%), Gaps = 1/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F+SM   N VSW  ++ GY+++   ++  +L+  M     K    + +T+L GF +
Sbjct: 96  ARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDD 155

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +  +K    +H+  IR G +    +  SLVD Y K    D A ++F  +   D V++  +
Sbjct: 156 TTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVM 215

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           IT   + G  +EA K+F  MR    +P+ F   +++  +  + D   G+ IH +  K  +
Sbjct: 216 ITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSY 275

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D  V NAL+  Y ++  +     +F+ +   D VS+N + + +      ++   +F +
Sbjct: 276 VWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKR 335

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           +    F      F  +L   +   ++  G+Q HA  +  +      VG +LVDMY K   
Sbjct: 336 LQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEK 395

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
            EDA   F +LA ++   +TAII+ Y Q G  E ALK F++M  E +  ++ T AS L  
Sbjct: 396 FEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKA 455

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
            + +A+++ G+ LHS  ++ G L  +F  + LV MYA CGS+ DA  VFK    R+   W
Sbjct: 456 SANLASVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMPDRNIVCW 515

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I  Y ++G  E    +F  M++ G  PD ++F+ VL+ACSH GL+E+   +F+S+ +
Sbjct: 516 NALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTACSHRGLVEKALWYFNSMTQ 575

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
           +Y + P  KH+A MID+L R+G+F E EN I+E    P+ ++W ++L +C  H N +L +
Sbjct: 576 VYKLDPRRKHYATMIDVLCRSGRFNEAENLISEMPFEPDEVMWSSVLNSCRIHKNQDLAK 635

Query: 544 KDAEKLLELEP-KMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           K A++L +++  +  + YV  S+I A  G+W + + V+  +  +G+KK  + SW+E+D
Sbjct: 636 KAADQLFKMDALRDAAAYVNMSNIYAEAGKWENAAKVKKAMRERGVKKVTAYSWVEID 693



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 141/499 (28%), Positives = 241/499 (48%), Gaps = 16/499 (3%)

Query: 46  EKKFSKFSLSTVLKGFANSGYI-KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADN 104
           + + S+F+    LK    +  I KA Q+   M  R   +++      +V  Y K      
Sbjct: 43  DPEISRFNFK--LKDLVRANQIAKARQLFDEMPYRNTSSVNM-----MVSGYVKSRNLFR 95

Query: 105 ALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTE 164
           A ++F  +   + V+W  +I    Q    +EA  ++  M  S VKP+     +L+    +
Sbjct: 96  ARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDD 155

Query: 165 TGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNAL 224
           T   +    IH+ I ++GF +  +V N+LV  Y +   +   S++F  +  +DSVS+N +
Sbjct: 156 TTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVM 215

Query: 225 FSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL 284
            + +  Y   ++ L++F QM    F+P+  TF  +L       DV FG+Q+H   IK S 
Sbjct: 216 ITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSY 275

Query: 285 DGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRK 344
             +  V  +L+D Y K   ++ A   FD +   D  +Y  IIT YA  G+ E +   F++
Sbjct: 276 VWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKR 335

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404
           ++        F  A+ L+  +    L+ GR  H+ AV T  + ++ V  ALV MYAKC  
Sbjct: 336 LQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEK 395

Query: 405 IDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
            +DA  +F   A R++  W  +I  YV+ G  E+AL+ F+ M  E    D+ TF   L A
Sbjct: 396 FEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKA 455

Query: 465 CSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTE-IENFITETKLTP-- 521
            +++  +  GK+  SS+ ++ G+  ++   + ++D+    G   + IE F    K  P  
Sbjct: 456 SANLASVSLGKQLHSSVIRL-GLLSSVFSGSVLVDMYANCGSMKDAIEVF----KEMPDR 510

Query: 522 NALVWENLLGACSWHGNIE 540
           N + W  L+ A S +G+ E
Sbjct: 511 NIVCWNALISAYSQNGDAE 529



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 103/365 (28%), Positives = 188/365 (51%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +++A ++F  MP  + VS+N ++ GY + G  ++ + LF  M++M+ + S F+ + +L  
Sbjct: 194 LDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGM 253

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              S  +  GQ +H +AI+     D F++ +L+D YSK    D A  +F  + + D V++
Sbjct: 254 SVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSY 313

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             IIT     G  +++  +F  ++ +S     F   +++       +   G   HA    
Sbjct: 314 NIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVV 373

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
               S+  VGNALV MY +  +    +R+F  +A+++SV W A+ S +      ++ L++
Sbjct: 374 TTAVSEVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKM 433

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M  +    +  TF   LKA ++L+ V  GKQLH+  I+  L  +   G+ LVDMY  
Sbjct: 434 FKEMNRENVHGDQATFASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYAN 493

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G ++DA   F  + ++++  + A+I++Y+Q G+AE     F  M   G+  +  +  S 
Sbjct: 494 CGSMKDAIEVFKEMPDRNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSV 553

Query: 361 LNGCS 365
           L  CS
Sbjct: 554 LTACS 558



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 140/350 (40%), Gaps = 64/350 (18%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E A R+F ++   N V W A+++ Y + G  ++ + +F  M        + + ++ LK  
Sbjct: 397 EDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKAS 456

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           AN   +  G+ +H+  IRLG     F    LVDMY+ CG   +A++VF  + D ++V W 
Sbjct: 457 ANLASVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWN 516

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           A+I+   Q G  +     F  M ES + P+     S++ A +  G               
Sbjct: 517 ALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTACSHRG--------------- 561

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
             E      N++  +Y  + R  + + + + +             RF + E+      + 
Sbjct: 562 LVEKALWYFNSMTQVYKLDPRRKHYATMIDVLCRS---------GRFNEAEN------LI 606

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M    F+P+   +  +L +C          ++H          N  +     D   K 
Sbjct: 607 SEM---PFEPDEVMWSSVLNSC----------RIHK---------NQDLAKKAADQLFKM 644

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
             L DA             AY  +   YA+AG+ E A K  + MR  G+K
Sbjct: 645 DALRDAA------------AYVNMSNIYAEAGKWENAAKVKKAMRERGVK 682



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A  VFK MP+ N+V WNAL++ Y+++GD +     F  M +        S  +VL  
Sbjct: 497 MKDAIEVFKEMPDRNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTA 556

Query: 61  FANSGYI-KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            ++ G + KA    ++M         +    +++D+  + G  + A  +   +  +PD V
Sbjct: 557 CSHRGLVEKALWYFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAENLISEMPFEPDEV 616

Query: 119 AWGAIIT 125
            W +++ 
Sbjct: 617 MWSSVLN 623


>gi|125603224|gb|EAZ42549.1| hypothetical protein OsJ_27115 [Oryza sativa Japonica Group]
          Length = 696

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 197/602 (32%), Positives = 324/602 (53%), Gaps = 7/602 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+RVF  +P  + VSWNALL   A SG   +   L  +M       + F+L + L+  A 
Sbjct: 46  ARRVFDEVPRRDEVSWNALLAAQAASGAHPEAWRLLRAMHAQGLASNTFALGSALRSAAV 105

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +     G  + ++A++ G A + F + +L+D+Y+KCG   +A +VF  + + + V+W A+
Sbjct: 106 ARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNAL 165

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    + G    A ++F  M    + P++    SL+ A  E         +H  I KYG 
Sbjct: 166 IAGYTESGDMASALELFLEMEREGLAPDEATFASLLTAV-EGPSCFLMHQLHGKIVKYGS 224

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAH-QDSVSWNALFSRFQDYESPDQGLRIFY 242
                V NA ++ Y + G +    R+F+ I   +D +SWNA+   +      D+ ++ F 
Sbjct: 225 ALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFV 284

Query: 243 QMLLK-GFKPNMCTFIVILKACSSLS-DVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           +M+ + G  P+M +F  I+ +CS    D   G+ +H   IK +L+G   V  +L+ MY +
Sbjct: 285 RMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTR 344

Query: 301 --SGCL-EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
               C+ EDA   F+SL  KD  ++ +++T Y+Q G +  ALK FR M  E ++++E+  
Sbjct: 345 YNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAF 404

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           ++ L   S +A L  G+ +H + + +G   + FVS++L+ MY+K G IDDA   F+ +  
Sbjct: 405 SAALRSSSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADK 464

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
             +  WN MI GY +HG  E     F  ML      D ITFV ++++CSH GL++EG + 
Sbjct: 465 SSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEI 524

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
            ++++  YG+   ++H+AC +D+ GRAG+  + +  I      P+A+VW  LLGAC  HG
Sbjct: 525 LNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLLGACRIHG 584

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           N+EL    A  L   EP+  S YV  S + +  G W+D + V+ ++  +G+ K P  SWI
Sbjct: 585 NVELASDVASHLFVAEPRQHSTYVLLSSMYSGLGMWSDRATVQRVMKKRGLSKVPGWSWI 644

Query: 598 EV 599
           EV
Sbjct: 645 EV 646



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 103/227 (45%), Gaps = 2/227 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A + F S+   + VSWN++L GY++ G     +  F  M     +  +++ S  L+ 
Sbjct: 351 MEDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRS 410

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    ++ G+ +H + I  G A + F+S SL+ MYSK G+ D+A K F        V W
Sbjct: 411 SSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPW 470

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG-ESIHAVIC 179
            A+I    Q G  +    +FN M +     +      L+ + +  G    G E ++ +  
Sbjct: 471 NAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMET 530

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-DSVSWNALF 225
           KYG           V +Y   G++    ++ +++  + D++ W  L 
Sbjct: 531 KYGVPLRMEHYACGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLL 577


>gi|15228265|ref|NP_190368.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207726|sp|Q9STS9.1|PP268_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g47840
 gi|4741201|emb|CAB41867.1| putative protein [Arabidopsis thaliana]
 gi|332644818|gb|AEE78339.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 706

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 190/601 (31%), Positives = 321/601 (53%), Gaps = 2/601 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFS--LSTVL 58
           +  A++VF  MP  ++VSW +++  Y  + +  + + LF +M+ ++   S  +  LS VL
Sbjct: 56  LRAARQVFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRVVDHAVSPDTSVLSVVL 115

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
           K    S  I  G+ +HA A++       ++  SL+DMY + G  D + +VF  +   + V
Sbjct: 116 KACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVFSEMPFRNAV 175

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            W AIIT L   G  +E    F+ M  S    + +     ++A       + G++IH  +
Sbjct: 176 TWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQVKYGKAIHTHV 235

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
              GF +   V N+L +MY E G +  G  +FE ++ +D VSW +L   ++      + +
Sbjct: 236 IVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSLIVAYKRIGQEVKAV 295

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
             F +M      PN  TF  +  AC+SLS + +G+QLH + +   L+ +  V  S++ MY
Sbjct: 296 ETFIKMRNSQVPPNEQTFASMFSACASLSRLVWGEQLHCNVLSLGLNDSLSVSNSMMKMY 355

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
              G L  A V F  +  +D+ +++ II  Y QAG  E   K F  MR  G K  +F LA
Sbjct: 356 STCGNLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFKYFSWMRQSGTKPTDFALA 415

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L+    +A +  GR +H++A+  G   +  V ++L+ MY+KCGSI +A  +F  +   
Sbjct: 416 SLLSVSGNMAVIEGGRQVHALALCFGLEQNSTVRSSLINMYSKCGSIKEASMIFGETDRD 475

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D  S   MI GY +HG  ++A++ F   L  G+ PD +TF+ VL+AC+H G ++ G  +F
Sbjct: 476 DIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFRPDSVTFISVLTACTHSGQLDLGFHYF 535

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           + +++ Y + P  +H+ CM+D+L RAG+ ++ E  I E     + +VW  LL AC   G+
Sbjct: 536 NMMQETYNMRPAKEHYGCMVDLLCRAGRLSDAEKMINEMSWKKDDVVWTTLLIACKAKGD 595

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           IE   + AE++LEL+P   +  V  ++I ++ G   + + VR  + ++G+ KEP  S I+
Sbjct: 596 IERGRRAAERILELDPTCATALVTLANIYSSTGNLEEAANVRKNMKAKGVIKEPGWSSIK 655

Query: 599 V 599
           +
Sbjct: 656 I 656



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 147/288 (51%), Gaps = 2/288 (0%)

Query: 191 NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL--KG 248
           N+ +   +  G +    +VF+ + H D VSW ++  R+    + D+ L +F  M +    
Sbjct: 44  NSHLRSLINAGNLRAARQVFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRVVDHA 103

Query: 249 FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
             P+     V+LKAC   S++ +G+ LHA+ +K SL  +  VG+SL+DMY + G ++ + 
Sbjct: 104 VSPDTSVLSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSC 163

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
             F  +  ++   +TAIIT    AG  +  L  F +M      S+ +T A  L  C+ + 
Sbjct: 164 RVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLR 223

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
            +  G+ +H+  +  G +  + V+ +L  MY +CG + D   +F+  + RD  SW  +I 
Sbjct: 224 QVKYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSLIV 283

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            Y + G   KA+E F  M +    P+E TF  + SAC+ +  +  G++
Sbjct: 284 AYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRLVWGEQ 331


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 191/572 (33%), Positives = 304/572 (53%), Gaps = 40/572 (6%)

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127
           +  ++VHA  +    +++ F+   L+D+Y KC   D+A K+F R+   +   W ++I+ L
Sbjct: 32  RGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVL 91

Query: 128 DQQGCCQEAAKIFNLMRESS------------------------VKP-------NQFVLT 156
            + G   EAA++F  M E                          VK        N++   
Sbjct: 92  TKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFG 151

Query: 157 SLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ 216
           S + A     D   G  +HA++ K  + +D  +G+AL+ MY + G V+    VF  +  +
Sbjct: 152 SALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIER 211

Query: 217 DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLH 276
           + V+WN+L + ++      + L +F +M+  G +P+  T   ++ AC+SL  +  G Q+H
Sbjct: 212 NLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIH 271

Query: 277 AHTIK-HSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEA 335
           A  +K +    + V+G +LVDMY K   + +A   FD ++ +++ + T++++ YA+A   
Sbjct: 272 ARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASV 331

Query: 336 EMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL-------D 388
           + A   F KM    + S    +A           L   RLL   ++   H         D
Sbjct: 332 KAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLKSD 391

Query: 389 MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
           +FV  +L+ MY KCGSI+D   VF+    RD  SWN +I GY ++G G +AL+ FR ML 
Sbjct: 392 IFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLV 451

Query: 449 EGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFT 508
            G  PD +T + VL ACSH GL+EEG+ +F S+++ +G+ P   H+ CM+D+LGRAG   
Sbjct: 452 CGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEE-HGLIPLKDHYTCMVDLLGRAGCLN 510

Query: 509 EIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISA 568
           E +N I    + P+A+VW +LL AC  HGNIE+ +  AEKLLE++P     YV  S++ A
Sbjct: 511 EAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYA 570

Query: 569 TQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
             GRW D   VR L+  QG+ K+P CSWIEV+
Sbjct: 571 ELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVE 602



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 133/481 (27%), Positives = 223/481 (46%), Gaps = 68/481 (14%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A R+F SMPE +  SWN++++G+A+    ++ +  F  M   +   +++S  + L  
Sbjct: 97  LDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSA 156

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    +  G  VHA+  +   + D ++  +L+DMYSKCG    A +VF  + + ++V W
Sbjct: 157 CAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTW 216

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++ITC +Q G   EA ++F  M +S ++P++  L S+V A       + G  IHA + K
Sbjct: 217 NSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVK 276

Query: 181 YG-FESDTLVGNALVSMYMENGRVSYGSRVFEAIA------------------------- 214
              F  D ++GNALV MY +  +V+   RVF+ ++                         
Sbjct: 277 TNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARF 336

Query: 215 ------HQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSD 268
                  ++ VSWNAL + +      ++ LR+F  +  +   P   TF  +LK     SD
Sbjct: 337 MFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLK-----SD 391

Query: 269 VGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITS 328
           +                    VG SL+DMY K G +ED    F+ +  +D  ++ AII  
Sbjct: 392 I-------------------FVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVG 432

Query: 329 YAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH--- 385
           YAQ G    AL+ FRKM + G K +  T+   L  CS    +  GR  H       H   
Sbjct: 433 YAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGR--HYFFSMEEHGLI 490

Query: 386 -LLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DTASWNMMIGGYVKHG---LGEKAL 440
            L D +  T +V +  + G +++A+ + +   +  D   W  ++     HG   +G+ A 
Sbjct: 491 PLKDHY--TCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAA 548

Query: 441 E 441
           E
Sbjct: 549 E 549



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 142/312 (45%), Gaps = 40/312 (12%)

Query: 249 FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
           + PN   F  +L +C         + +HA  +         +   L+D+Y K  CL+DA 
Sbjct: 11  YLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDAR 70

Query: 309 VAFDSLANKDLFAYTAII-------------------------------TSYAQAGEAEM 337
             FD +  ++ F + ++I                               + +AQ    E 
Sbjct: 71  KLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEE 130

Query: 338 ALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVA 397
           +L+ F KM  E    NE++  S L+ C+ +  L  G  +H++  K+ +  D+++ +AL+ 
Sbjct: 131 SLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALID 190

Query: 398 MYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEIT 457
           MY+KCGS+  AE VF G   R+  +WN +I  Y ++G   +ALE F  M+D G  PDE+T
Sbjct: 191 MYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVT 250

Query: 458 FVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTE-------- 509
              V+SAC+ +  ++EG +  + + K       +     ++D+  +  K  E        
Sbjct: 251 LASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRM 310

Query: 510 -IENFITETKLT 520
            I N ++ET + 
Sbjct: 311 SIRNVVSETSMV 322



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 101/246 (41%), Gaps = 40/246 (16%)

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
           N    A  L+ C    +    RL+H+  + T   +++F+   L+ +Y KC  +DDA  +F
Sbjct: 14  NSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLF 73

Query: 413 KGSALRDT-------------------------------ASWNMMIGGYVKHGLGEKALE 441
                R+T                                SWN M+ G+ +H   E++LE
Sbjct: 74  DRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLE 133

Query: 442 AFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDIL 501
            F  M  E ++ +E +F   LSAC+ +  +  G +  + + K    T  +   + +ID+ 
Sbjct: 134 YFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYST-DVYMGSALIDMY 192

Query: 502 GRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYV 561
            + G     E   +   +  N + W +L+     +G        A + LE+  +M  + +
Sbjct: 193 SKCGSVACAEEVFSGM-IERNLVTWNSLITCYEQNG-------PASEALEVFVRMMDSGL 244

Query: 562 FPSDIS 567
            P +++
Sbjct: 245 EPDEVT 250


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 196/601 (32%), Positives = 306/601 (50%), Gaps = 69/601 (11%)

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127
           +  + VH   I+     + F+   L+D+Y KCG  D A KVF R+ + +V ++ +II+ L
Sbjct: 41  RDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMSERNVFSFNSIISTL 100

Query: 128 DQQGCCQEAAKIFNLMRESS--------------------------VKPNQFVLT----- 156
            + G   E+A +F+LM E                            +  + FVL      
Sbjct: 101 MRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFG 160

Query: 157 SLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ 216
           S + A +   D + G  IH +I K  +  D  +G+ L+  Y + G V    RVF+ +  +
Sbjct: 161 SGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEK 220

Query: 217 DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLH 276
           + VSWN L + ++      + L  F +M   GFKP+  T   ++ AC++L+    G Q+H
Sbjct: 221 NVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIH 280

Query: 277 AHTIK-HSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD----------------------- 312
           A  +K      + ++G +LVDMY K G + +A   FD                       
Sbjct: 281 ARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASV 340

Query: 313 --------SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
                   ++  KD+ ++ A+I  Y Q GE E AL  FR ++ E +    +T  + LN  
Sbjct: 341 KAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNAS 400

Query: 365 SPVATLANGRLLHSIAVK------TGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           + +A L  GR  HS  VK      +G   D+FV  +L+ MY KCGS+++   VF+    +
Sbjct: 401 ANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEK 460

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D  SWN MI GY ++G G +ALE F+ ML+ G  PD +T +  L ACSH GL+EEG+++F
Sbjct: 461 DHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYF 520

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            S+ K +G+ P   H+ CM+D+LGRAG   E ++ I      P+A+VW +LL AC  H N
Sbjct: 521 FSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHRN 580

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           I L +  AEK+ E++P     YV  +++ +  GRW D   VR L+  +G+ K+P CSWI+
Sbjct: 581 ITLGKYVAEKIFEIDPTSSGPYVLLANMYSELGRWGDAVSVRKLMRRRGVVKQPGCSWID 640

Query: 599 V 599
           +
Sbjct: 641 I 641



 Score =  198 bits (503), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 136/482 (28%), Positives = 225/482 (46%), Gaps = 51/482 (10%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           +F  MPE +  SWN+++ G+A+    ++ +  F  M   +   + +S  + L   +    
Sbjct: 112 LFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGLSACSRLKD 171

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +K G  +H +  +   +LD F+   L+D YSKCGL   A +VF  +++ +VV+W  +ITC
Sbjct: 172 LKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITC 231

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG-FES 185
            +Q G   EA + F  M E   KP++  L S+V A       + G  IHA + K   F +
Sbjct: 232 YEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRN 291

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFE-------------------------------AIA 214
           D ++GNALV MY + GRV+    VF+                                I 
Sbjct: 292 DLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIK 351

Query: 215 HQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ 274
            +D VSWNAL + +      ++ L +F  +  +   P   TF  +L A ++L+D+  G+Q
Sbjct: 352 QKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQ 411

Query: 275 LHAHTIKHSL------DGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITS 328
            H+H +KH        + +  VG SL+DMY K G +E+    F+++  KD  ++  +I  
Sbjct: 412 AHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIG 471

Query: 329 YAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG-RLLHSIAVKTGHLL 387
           YAQ G    AL+ F+KM   G K +  T+   L  CS    +  G R   S+  + G L 
Sbjct: 472 YAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLP 531

Query: 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DTASW-----------NMMIGGYVKHGL 435
                T +V +  + G +++A+ + +    + D   W           N+ +G YV   +
Sbjct: 532 VKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHRNITLGKYVAEKI 591

Query: 436 GE 437
            E
Sbjct: 592 FE 593



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 177/369 (47%), Gaps = 48/369 (13%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+RVF  M E NVVSWN L+  Y ++G   + +  F  M ++  K  + +L++V+   A 
Sbjct: 210 ARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACAT 269

Query: 64  SGYIKAGQVVHAMAIRLGCALDKF-----LSCSLVDMYSKCGLADNALKVFYR------- 111
               K G  +HA  ++     DKF     L  +LVDMY+KCG  + A  VF R       
Sbjct: 270 LAAFKEGVQIHARVVK----SDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAV 325

Query: 112 ------------------------IKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESS 147
                                   IK  D+V+W A+I    Q G  +EA  +F +++  S
Sbjct: 326 SETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRES 385

Query: 148 VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF------ESDTLVGNALVSMYMENG 201
           V P  +   +L+ A+    D   G   H+ + K+GF      E D  VGN+L+ MYM+ G
Sbjct: 386 VCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCG 445

Query: 202 RVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILK 261
            V  G RVFE +  +D VSWN +   +       + L +F +ML  G KP+  T I  L 
Sbjct: 446 SVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLC 505

Query: 262 ACSSLSDVGFGKQ-LHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK-DL 319
           ACS    V  G++   + T +H L       T +VD+  ++GCLE+A    +S+  + D 
Sbjct: 506 ACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDA 565

Query: 320 FAYTAIITS 328
             +++++++
Sbjct: 566 VVWSSLLSA 574



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 67/158 (42%), Gaps = 31/158 (19%)

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
            A  L+ C  + +  + R +H   ++T    ++F+   L+ +Y KCG +D A  VF   +
Sbjct: 27  FAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMS 86

Query: 417 LR-------------------------------DTASWNMMIGGYVKHGLGEKALEAFRM 445
            R                               D  SWN MI G+ +H   E+AL+ F  
Sbjct: 87  ERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVR 146

Query: 446 MLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           M  + +V ++ +F   LSACS +  ++ G +    I K
Sbjct: 147 MHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISK 184


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 198/596 (33%), Positives = 317/596 (53%), Gaps = 1/596 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A RVF+ +     V ++ +L GYA++      +  F  M   E +      + +L+    
Sbjct: 98  AARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGE 157

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +  +K G+ +H + I  G   + F+  +++ +Y+KC   DNA K+F R++  D+V+W  +
Sbjct: 158 NLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTL 217

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    Q G  + A ++   M+E+  KP+   L S++ A  +    R G SIH    + GF
Sbjct: 218 VAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGF 277

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           ES   V NAL+ MY + G       VF+ +  +  VSWN +          ++    F +
Sbjct: 278 ESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLK 337

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           ML +G  P   T + +L AC++L D+  G  +H    K  LD N  V  SL+ MY K   
Sbjct: 338 MLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKR 397

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++ A   F++L   ++  + A+I  YAQ G  + AL  F  M+ +GIK + FTL   +  
Sbjct: 398 VDIAASIFNNLEKTNV-TWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITA 456

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
            +  +     + +H +AV+     ++FVSTALV MYAKCG+I  A  +F     R   +W
Sbjct: 457 LADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITW 516

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N MI GY  HG+G++ L+ F  M      P++ITF+ V+SACSH G +EEG   F S+++
Sbjct: 517 NAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQE 576

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            Y + PT+ H++ M+D+LGRAG+  +  NFI E  + P   V   +LGAC  H N+EL E
Sbjct: 577 DYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELGE 636

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           K A+KL +L+P     +V  ++I A+   W+  + VR  +  +G+ K P CSW+E+
Sbjct: 637 KAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVEL 692



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 158/302 (52%)

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
            I   I K GF ++ L    ++S++ + G  S  +RVFE +  +  V ++ +   +    
Sbjct: 65  QILPFIIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNS 124

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
           S    L  F +M+    +  +  +  +L+ C    D+  G+++H   I +  + N  V T
Sbjct: 125 SLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMT 184

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           +++ +Y K   +++A   F+ + +KDL ++T ++  YAQ G A+ AL+   +M+  G K 
Sbjct: 185 AVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKP 244

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
           +  TL S L   + +  L  GR +H  A ++G    + V+ AL+ MY KCGS   A  VF
Sbjct: 245 DSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVF 304

Query: 413 KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE 472
           KG   +   SWN MI G  ++G  E+A   F  MLDEG VP  +T + VL AC+++G +E
Sbjct: 305 KGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLE 364

Query: 473 EG 474
            G
Sbjct: 365 RG 366



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 155/307 (50%), Gaps = 2/307 (0%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
            +A+ VFK M    VVSWN +++G A++G+ ++    F  M D  +  ++ ++  VL   
Sbjct: 298 RIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLAC 357

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           AN G ++ G  VH +  +L    +  +  SL+ MYSKC   D A  +F  ++  + V W 
Sbjct: 358 ANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEKTN-VTWN 416

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           A+I    Q GC +EA  +F +M+   +K + F L  ++ A  +    R  + IH +  + 
Sbjct: 417 AMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRA 476

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
             +++  V  ALV MY + G +    ++F+ +  +  ++WNA+   +  +    + L +F
Sbjct: 477 CMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLF 536

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK-HSLDGNHVVGTSLVDMYDK 300
            +M     KPN  TF+ ++ ACS    V  G  L     + + L+      +++VD+  +
Sbjct: 537 NEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGR 596

Query: 301 SGCLEDA 307
           +G L+DA
Sbjct: 597 AGQLDDA 603



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 132/285 (46%), Gaps = 7/285 (2%)

Query: 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
           +V+L+ C+S  ++    Q+    IK+     H+  T ++ ++ K G   +A   F+ +  
Sbjct: 51  VVLLENCTSKKEL---YQILPFIIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVEL 107

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL 376
           K    Y  ++  YA+      AL  F +M  + ++      A  L  C     L  GR +
Sbjct: 108 KLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREI 167

Query: 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
           H + +  G   ++FV TA++++YAKC  ID+A  +F+    +D  SW  ++ GY ++G  
Sbjct: 168 HGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHA 227

Query: 437 EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFA 495
           ++AL+    M + G  PD +T V +L A + M  +  G+  H  + +   G    +    
Sbjct: 228 KRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRS--GFESLVNVTN 285

Query: 496 CMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
            ++D+  + G    I   + +   +   + W  ++  C+ +G  E
Sbjct: 286 ALLDMYFKCGS-ARIARLVFKGMRSKTVVSWNTMIDGCAQNGESE 329



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 67/128 (52%), Gaps = 6/128 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+++F  M E +V++WNA+++GY   G G++ + LF  M+    K +  +  +V+  
Sbjct: 498 IKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISA 557

Query: 61  FANSGYIKAGQVVHAMA---IRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPD 116
            ++SG+++ G ++         L   +D +   ++VD+  + G  D+A      +   P 
Sbjct: 558 CSHSGFVEEGLLLFKSMQEDYYLEPTMDHY--SAMVDLLGRAGQLDDAWNFIQEMPIKPG 615

Query: 117 VVAWGAII 124
           +   GA++
Sbjct: 616 ISVLGAML 623


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 183/598 (30%), Positives = 319/598 (53%), Gaps = 1/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
            +R+F  +    +  WN L++ YA+ G+ ++ + LF  M+++  +   ++ + VLKGFA 
Sbjct: 111 GRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAA 170

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           S  ++  + VH   ++LG      +  SL+  Y KCG  ++A  +F  + D DVV+W ++
Sbjct: 171 SAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSM 230

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+     G  +   + F  M    V  +   L +++ A    G+   G ++HA   K GF
Sbjct: 231 ISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGF 290

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
               +  N L+ MY + G ++  + VF  +     VSW ++ +         + + +F +
Sbjct: 291 SGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDE 350

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  KG +P++     ++ AC+  + +  G+++H H  K+++  N  V  +L++MY K G 
Sbjct: 351 MQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGS 410

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +E+A + F  L  K++ ++  +I  Y+Q      AL+ F  M+ + +K ++ T+A  L  
Sbjct: 411 MEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQ-LKPDDVTMACVLPA 469

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +A L  GR +H   ++ G+  D+ V+ ALV MY KCG +  A+ +F     +D   W
Sbjct: 470 CAGLAALEKGREIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILW 529

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
            +MI GY  HG G++A+  F  M   G  P+E +F  +L AC+H GL++EG K F S+K 
Sbjct: 530 TVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKS 589

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
              I P ++H+ACM+D+L R+G  +    FI    + P+A +W  LL  C  H ++EL E
Sbjct: 590 ECNIEPKLEHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALLSGCRIHHDVELAE 649

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           K AE + ELEP+    YV  +++ A   +W +   ++  +S  G+K +  CSWIEV G
Sbjct: 650 KVAEHIFELEPENTRYYVLLANVYAEAEKWEEVKKIQRRISKGGLKNDQGCSWIEVQG 707



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 140/525 (26%), Positives = 266/525 (50%), Gaps = 13/525 (2%)

Query: 17  VSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAM 76
           V  NA +  + E GD +  M L    +  E + + +   +VL+  A    ++ G+ VH++
Sbjct: 25  VDKNAKICKFCEMGDLRNAMKLLSRSQRSELELNTYC--SVLQLCAELKSLEDGKRVHSI 82

Query: 77  AIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEA 136
               G A+D+ L   LV MY  CG      ++F  I +  +  W  +++   + G  +E+
Sbjct: 83  ISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRES 142

Query: 137 AKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSM 196
             +F  M+E  ++ + +  T +++    +   R  + +H  + K GF S   V N+L++ 
Sbjct: 143 VGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAA 202

Query: 197 YMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTF 256
           Y + G V     +F+ ++ +D VSWN++ S          GL  F QML  G   +  T 
Sbjct: 203 YFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATL 262

Query: 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
           + +L AC+++ ++  G+ LHA+ +K    G  +   +L+DMY K G L  A   F  +  
Sbjct: 263 VNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGE 322

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL 376
             + ++T+II ++ + G    A+  F +M+ +G++ + + + S ++ C+   +L  GR +
Sbjct: 323 TTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREV 382

Query: 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
           H+   K     ++ VS AL+ MYAKCGS+++A  +F    +++  SWN MIGGY ++ L 
Sbjct: 383 HNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLP 442

Query: 437 EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFA 495
            +AL+ F + + +   PD++T   VL AC+ +  +E+G++ H   ++K Y    +  H A
Sbjct: 443 NEALQLF-LDMQKQLKPDDVTMACVLPACAGLAALEKGREIHGHILRKGY---FSDLHVA 498

Query: 496 C-MIDILGRAGKFTEIENFITETKLTP--NALVWENLLGACSWHG 537
           C ++D+  + G     +       + P  + ++W  ++     HG
Sbjct: 499 CALVDMYVKCGLLVLAQQLF---DMIPKKDMILWTVMIAGYGMHG 540



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 124/446 (27%), Positives = 222/446 (49%), Gaps = 6/446 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ +F  + + +VVSWN++++G   +G  +  +  F  M ++       +L  VL  
Sbjct: 209 VESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVA 268

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            AN G +  G+ +HA  ++ G +     + +L+DMYSKCG  + A +VF ++ +  +V+W
Sbjct: 269 CANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSW 328

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +II    ++G   EA  +F+ M+   ++P+ + +TS+V A   +     G  +H  I K
Sbjct: 329 TSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKK 388

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
               S+  V NAL++MY + G +   + +F  +  ++ VSWN +   +     P++ L++
Sbjct: 389 NNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQL 448

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  M  K  KP+  T   +L AC+ L+ +  G+++H H ++     +  V  +LVDMY K
Sbjct: 449 FLDM-QKQLKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDLHVACALVDMYVK 507

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L  A   FD +  KD+  +T +I  Y   G  + A+  F KMR+ GI+  E +  S 
Sbjct: 508 CGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSI 567

Query: 361 LNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR- 418
           L  C+    L  G +L  S+  +      +     +V +  + G++  A    +   ++ 
Sbjct: 568 LYACTHSGLLKEGWKLFDSMKSECNIEPKLEHYACMVDLLIRSGNLSRAYKFIETMPIKP 627

Query: 419 DTASWNMMIGGYVKHG---LGEKALE 441
           D A W  ++ G   H    L EK  E
Sbjct: 628 DAAIWGALLSGCRIHHDVELAEKVAE 653


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 188/608 (30%), Positives = 330/608 (54%), Gaps = 10/608 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKF--SKFSLSTVL 58
           ++ A  +F  MPE N++SWN+L+ G++E+G   +    F S+ +          ++ T+L
Sbjct: 261 LDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLL 320

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
              +  G +  G V+H MA++LG   +  +  +L+DMYSKCG    A  +F +I++  VV
Sbjct: 321 PVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVV 380

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMR-----ESSVKPNQFVLTSLVRATTETGDQRCGES 173
           +W ++I    ++G   E    F+L+R     E  ++ N+  + +L+ A  E  +     +
Sbjct: 381 SWNSMIGAYSREGFVFET---FDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRA 437

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           +H    ++ F+   L+ NA ++ Y + G + +   VF  +  +   SWNA+         
Sbjct: 438 LHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGD 497

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
           P + L  +++M   G  P+  + + +L AC  L  + +GK++H   +++ L+ N  V  S
Sbjct: 498 PIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVS 557

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           L+ +Y            F+++ +K+   + A+++ Y+Q      AL  FR+M  +G++ +
Sbjct: 558 LLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPD 617

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
           E  +AS L  CS ++ L  G+ +H  A+K   + D FV+ +L+ MYAK G +  ++ +F 
Sbjct: 618 EIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFN 677

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
               ++ ASWN+MI G+  HG G KA+E F  M      PD  TF+ VL AC H GL+ E
Sbjct: 678 RLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSE 737

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           G  + + ++ +Y + P ++H+AC+ID+LGRAG+  E  NFI E    P+A +W +LL + 
Sbjct: 738 GLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSS 797

Query: 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPS 593
             + ++E+ EK AEKLL LE     +Y+  S++ AT G+W+    VR  +    ++K+  
Sbjct: 798 ITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVG 857

Query: 594 CSWIEVDG 601
           CSWIE+ G
Sbjct: 858 CSWIELRG 865



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 127/480 (26%), Positives = 245/480 (51%), Gaps = 9/480 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDM-EKKFSKFSLSTVLKGFA 62
           ++ VF  +   N+  WNAL++GY  +    + +H F  +  + E +   F+   ++K   
Sbjct: 162 SRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACT 221

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
               I  G+ VH MA+++G  +D F+  +++ +Y KCG  D A+++F ++ + ++++W +
Sbjct: 222 GKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNS 281

Query: 123 IITCLDQQGCCQEAAKIFNLMRES--SVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
           +I    + G   EA + F  + ES   + P+   + +L+   +  G+   G  IH +  K
Sbjct: 282 LIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVK 341

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD----YESPDQ 236
            G   + +V NAL+ MY + G +S  + +F  I ++  VSWN++   +      +E+ D 
Sbjct: 342 LGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDL 401

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
             +++ +  L   + N  T + +L AC   S++   + LH ++++HS     ++  + + 
Sbjct: 402 LRKMWMEEEL--MEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIA 459

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
            Y K G L  A   F  +  K + ++ A+I  +AQ G+   AL  + +M   GI  ++F+
Sbjct: 460 AYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFS 519

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
           + S L  C  +  L  G+ +H   ++ G  ++ FV+ +L+++Y  C         F+   
Sbjct: 520 IVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMG 579

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            +++  WN M+ GY ++ L  +AL  FR ML +G  PDEI    +L ACS +  +  GK+
Sbjct: 580 DKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKE 639



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 143/522 (27%), Positives = 247/522 (47%), Gaps = 33/522 (6%)

Query: 85  DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIF-NLM 143
           D  L+  L+ MYS CG    +  VF R+ + ++  W A+++   +     EA   F  L+
Sbjct: 142 DFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELI 201

Query: 144 RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRV 203
             +  +P+ F    L++A T   D   G+S+H +  K G   D  VGNA++++Y + G +
Sbjct: 202 SVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFL 261

Query: 204 SYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK--GFKPNMCTFIVILK 261
                +F+ +  Q+ +SWN+L   F +     +  R F  +L    G  P++ T + +L 
Sbjct: 262 DEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLP 321

Query: 262 ACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFA 321
            CS   +V  G  +H   +K  L    +V  +L+DMY K GCL +A + F  + NK + +
Sbjct: 322 VCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVS 381

Query: 322 YTAIITSYAQAGEAEMALKCFRKMRLEG--IKSNEFTLASCLNGCSPVATLANGRLLHSI 379
           + ++I +Y++ G         RKM +E   ++ NE T+ + L  C   + L + R LH  
Sbjct: 382 WNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGY 441

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
           +++        ++ A +A YAKCGS+  AE VF G   +  +SWN +IGG+ ++G   KA
Sbjct: 442 SLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKA 501

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK-------KHFSSIKKIYGITPTIK 492
           L+ +  M   G +PD+ + V +L AC  +GL++ GK       ++   +     ++    
Sbjct: 502 LDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSL 561

Query: 493 HFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLEL 552
           +F C     GR            ET    N++ W  +L   S         +   + L L
Sbjct: 562 YFHCSKPFYGRT---------YFETMGDKNSVCWNAMLSGYS-------QNELPNEALSL 605

Query: 553 EPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSC 594
             +M S+ + P +I+          G  + LS+ G+ KE  C
Sbjct: 606 FRQMLSDGLEPDEIAIA-----SILGACSQLSALGLGKEVHC 642



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 161/314 (51%), Gaps = 6/314 (1%)

Query: 158 LVRATTETGDQRCGESIHAVIC-KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ 216
           L++   +  +   G  +  ++C    F  D ++   L++MY   G       VF+ + ++
Sbjct: 113 LLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNK 172

Query: 217 DSVSWNALFSRFQDYESPDQGLRIFYQML-LKGFKPNMCTFIVILKACSSLSDVGFGKQL 275
           +   WNAL S +   E  D+ +  F +++ +  F+P+  TF  ++KAC+   D+  GK +
Sbjct: 173 NLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSV 232

Query: 276 HAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEA 335
           H   +K  L  +  VG +++ +Y K G L++A   FD +  ++L ++ ++I  +++ G  
Sbjct: 233 HGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFW 292

Query: 336 EMALKCFRKM--RLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST 393
             A + FR +    +G+  +  T+ + L  CS    +  G ++H +AVK G + ++ V  
Sbjct: 293 LEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCN 352

Query: 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML--DEGY 451
           AL+ MY+KCG + +A  +F+    +   SWN MIG Y + G   +  +  R M   +E  
Sbjct: 353 ALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELM 412

Query: 452 VPDEITFVVVLSAC 465
             +E+T + +L AC
Sbjct: 413 EVNEVTILNLLPAC 426



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 155/309 (50%), Gaps = 8/309 (2%)

Query: 258 VILKACSSLSDVGFGKQLHAHT-IKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
           ++L+ C    +V  G++L     +     G+ V+ T L+ MY   G   ++ + FD L N
Sbjct: 112 MLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLN 171

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFTLASCLNGCSPVATLANGRL 375
           K+LF + A+++ Y +    + A+  F ++  +   + + FT    +  C+    +  G+ 
Sbjct: 172 KNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKS 231

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           +H +AVK G ++D+FV  A++A+Y KCG +D+A  +F     ++  SWN +I G+ ++G 
Sbjct: 232 VHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGF 291

Query: 436 GEKALEAFRMMLD--EGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIK 492
             +A  AFR +L+  +G +PD  T V +L  CS  G ++ G   H  ++K   G+   + 
Sbjct: 292 WLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVK--LGLVHELM 349

Query: 493 HFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLEL 552
               +ID+  + G  +E      + +   + + W +++GA S  G +        K+   
Sbjct: 350 VCNALIDMYSKCGCLSEAAILFRKIE-NKSVVSWNSMIGAYSREGFVFETFDLLRKMWME 408

Query: 553 EPKMESNYV 561
           E  ME N V
Sbjct: 409 EELMEVNEV 417


>gi|242081959|ref|XP_002445748.1| hypothetical protein SORBIDRAFT_07g025050 [Sorghum bicolor]
 gi|241942098|gb|EES15243.1| hypothetical protein SORBIDRAFT_07g025050 [Sorghum bicolor]
          Length = 760

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 184/606 (30%), Positives = 322/606 (53%), Gaps = 8/606 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFC-SMKDMEKKFSKFSLSTVLKGFA 62
           A+ +F  MP  +VV+WN L+ GYA  G  +  +  F  + +D      +F+ + VL    
Sbjct: 29  ARLLFDGMPRRDVVTWNTLIAGYATQGSARSALGAFRDARRDGAVAVDRFTYAAVLAACG 88

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
            +G  ++G+  H +A+  G A   F+S S++DMY+KC + D     F R ++ D V+W  
Sbjct: 89  GAGDWRSGRAAHGLAVVSGLARTAFVSNSVIDMYAKCRMIDEVRLAFDRAEERDEVSWNL 148

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD-QRCGESIHAVICKY 181
           +++   + G  + AA +   M  S V+ + F L  +++A +E  D +     +H  + K 
Sbjct: 149 LLSAYVRMGWPEVAANVLVWMHRSGVELDAFALGGILKACSELEDSEDVRRMLHGCVIKV 208

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNAL---FSRFQDYESPD--- 235
           G + D  VG+ +V MY +NG +    +VF +I  Q+ V +N +   F+R  +   P+   
Sbjct: 209 GLDLDVFVGSTMVDMYAKNGGLEEAIKVFGSIPSQNVVIYNTMIAGFARLGNDPCPEIRM 268

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
           + +RI+  M  +  +P+  TF  +L+ C+  + V   +Q+HAH I    + +  +G +L+
Sbjct: 269 EAVRIYSNMFRRRIRPSKFTFKSVLEVCNLTNAVRCWRQIHAHVILFGFEDDEFIGNALI 328

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
           ++Y K+  ++D+   F     +++F +T++IT++ +   ++ AL  F+ +R  G++ ++F
Sbjct: 329 NLYSKARLVDDSLRCFHRTPKQEIFTWTSMITAFVRNEHSDKALNLFKGLRYTGVEPDQF 388

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
           T++S +N C+ ++       +H  AVK+G         + + MY   G +  A+  F+  
Sbjct: 389 TMSSVMNACADLSMPIACEQIHCYAVKSGFDRFTLCGNSQIEMYRCTGDLKAAKKTFERI 448

Query: 416 ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
              DT SW+ MI  Y  HG   +AL  F+ M D   + +E  F+ VL ACSH GLI+EG 
Sbjct: 449 PSLDTFSWSQMILSYAVHGHEREALLLFKKMRDCSVIINEFAFLAVLVACSHQGLIDEGF 508

Query: 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
           +H+ S+   Y   P +KH ACM+D+LG  GK  + E+FI  + L  ++++W  LL AC  
Sbjct: 509 RHYESMVSDYSFVPDVKHIACMVDLLGHVGKVADAEDFINSSGLENDSVLWHTLLRACRI 568

Query: 536 HGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCS 595
           HG+ +   K  EKL+ LEP   S+YV   ++    G+ +     R  +  +G+ KE   S
Sbjct: 569 HGDKDRGIKTGEKLMTLEPFAASSYVMLYNLYMDAGKISLAMRTRGQMRERGMTKESGVS 628

Query: 596 WIEVDG 601
           W E  G
Sbjct: 629 WAEFGG 634



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 137/530 (25%), Positives = 233/530 (43%), Gaps = 48/530 (9%)

Query: 78  IRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAA 137
           IR G     FLS +L+  Y +C    +A  +F  +   DVV W  +I     QG  + A 
Sbjct: 2   IRAGYRPGLFLSNNLLAAYVRCADTRSARLLFDGMPRRDVVTWNTLIAGYATQGSARSAL 61

Query: 138 KIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSM 196
             F +  R+ +V  ++F   +++ A    GD R G + H +    G      V N+++ M
Sbjct: 62  GAFRDARRDGAVAVDRFTYAAVLAACGGAGDWRSGRAAHGLAVVSGLARTAFVSNSVIDM 121

Query: 197 YMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTF 256
           Y +   +      F+    +D VSWN L S +     P+    +   M   G + +    
Sbjct: 122 YAKCRMIDEVRLAFDRAEERDEVSWNLLLSAYVRMGWPEVAANVLVWMHRSGVELDAFAL 181

Query: 257 IVILKACSSLSDV-GFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
             ILKACS L D     + LH   IK  LD +  VG+++VDMY K+G LE+A   F S+ 
Sbjct: 182 GGILKACSELEDSEDVRRMLHGCVIKVGLDLDVFVGSTMVDMYAKNGGLEEAIKVFGSIP 241

Query: 316 NKDLFAYTAIITSYAQAG-----EAEM-ALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369
           ++++  Y  +I  +A+ G     E  M A++ +  M    I+ ++FT  S L  C+    
Sbjct: 242 SQNVVIYNTMIAGFARLGNDPCPEIRMEAVRIYSNMFRRRIRPSKFTFKSVLEVCNLTNA 301

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           +   R +H+  +  G   D F+  AL+ +Y+K   +DD+   F  +  ++  +W  MI  
Sbjct: 302 VRCWRQIHAHVILFGFEDDEFIGNALINLYSKARLVDDSLRCFHRTPKQEIFTWTSMITA 361

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL-----------IEEGKKHF 478
           +V++   +KAL  F+ +   G  PD+ T   V++AC+ + +           ++ G   F
Sbjct: 362 FVRNEHSDKALNLFKGLRYTGVEPDQFTMSSVMNACADLSMPIACEQIHCYAVKSGFDRF 421

Query: 479 S-----------------SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTP 521
           +                 + KK +   P++  F+    IL  A    E E  +   K+  
Sbjct: 422 TLCGNSQIEMYRCTGDLKAAKKTFERIPSLDTFSWSQMILSYAVHGHEREALLLFKKMRD 481

Query: 522 -----NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDI 566
                N   +  +L ACS  G I+   +  E ++       S+Y F  D+
Sbjct: 482 CSVIINEFAFLAVLVACSHQGLIDEGFRHYESMV-------SDYSFVPDV 524



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 179/370 (48%), Gaps = 17/370 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDG------QKVMHLFCSMKDMEKKFSKFSL 54
           +E A +VF S+P  NVV +N ++ G+A  G+        + + ++ +M     + SKF+ 
Sbjct: 230 LEEAIKVFGSIPSQNVVIYNTMIAGFARLGNDPCPEIRMEAVRIYSNMFRRRIRPSKFTF 289

Query: 55  STVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
            +VL+    +  ++  + +HA  I  G   D+F+  +L+++YSK  L D++L+ F+R   
Sbjct: 290 KSVLEVCNLTNAVRCWRQIHAHVILFGFEDDEFIGNALINLYSKARLVDDSLRCFHRTPK 349

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
            ++  W ++IT   +     +A  +F  +R + V+P+QF ++S++ A  +       E I
Sbjct: 350 QEIFTWTSMITAFVRNEHSDKALNLFKGLRYTGVEPDQFTMSSVMNACADLSMPIACEQI 409

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H    K GF+  TL GN+ + MY   G +    + FE I   D+ SW+ +   +  +   
Sbjct: 410 HCYAVKSGFDRFTLCGNSQIEMYRCTGDLKAAKKTFERIPSLDTFSWSQMILSYAVHGHE 469

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACS--SLSDVGFGKQLHAHTIKHSL--DGNHVV 290
            + L +F +M       N   F+ +L ACS   L D GF +   +    +S   D  H+ 
Sbjct: 470 REALLLFKKMRDCSVIINEFAFLAVLVACSHQGLIDEGF-RHYESMVSDYSFVPDVKHI- 527

Query: 291 GTSLVDMYDKSGCLEDAGVAFDS--LANKDLFAYTAIITSYAQAGEAEMALKCFRK-MRL 347
              +VD+    G + DA    +S  L N  +  +T ++ +    G+ +  +K   K M L
Sbjct: 528 -ACMVDLLGHVGKVADAEDFINSSGLENDSVLWHT-LLRACRIHGDKDRGIKTGEKLMTL 585

Query: 348 EGIKSNEFTL 357
           E   ++ + +
Sbjct: 586 EPFAASSYVM 595


>gi|15221304|ref|NP_177599.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169837|sp|Q9CA56.1|PP121_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74600, chloroplastic; Flags: Precursor
 gi|12324789|gb|AAG52351.1|AC011765_3 hypothetical protein; 84160-81473 [Arabidopsis thaliana]
 gi|332197493|gb|AEE35614.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 895

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 190/600 (31%), Positives = 317/600 (52%), Gaps = 8/600 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A  VF  +P  +VVSW  +L+GY +S D    + +F  M+    + +  ++++V+  
Sbjct: 301 MAEAMEVFSRIPNPSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISA 360

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD---PDV 117
                 +     VHA   + G  LD  ++ +L+ MYSK G  D + +VF  + D    ++
Sbjct: 361 CGRPSMVCEASQVHAWVFKSGFYLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQNI 420

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           V    +IT   Q     +A ++F  M +  ++ ++F + SL+           G+ +H  
Sbjct: 421 V--NVMITSFSQSKKPGKAIRLFTRMLQEGLRTDEFSVCSLLSVLDCL---NLGKQVHGY 475

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
             K G   D  VG++L ++Y + G +    ++F+ I  +D+  W ++ S F +Y    + 
Sbjct: 476 TLKSGLVLDLTVGSSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMISGFNEYGYLREA 535

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           + +F +ML  G  P+  T   +L  CSS   +  GK++H +T++  +D    +G++LV+M
Sbjct: 536 IGLFSEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSALVNM 595

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K G L+ A   +D L   D  + +++I+ Y+Q G  +     FR M + G   + F +
Sbjct: 596 YSKCGSLKLARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAI 655

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           +S L   +     + G  +H+   K G   +  V ++L+ MY+K GSIDD    F     
Sbjct: 656 SSILKAAALSDESSLGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQING 715

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
            D  +W  +I  Y +HG   +AL+ + +M ++G+ PD++TFV VLSACSH GL+EE   H
Sbjct: 716 PDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACSHGGLVEESYFH 775

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
            +S+ K YGI P  +H+ CM+D LGR+G+  E E+FI    + P+ALVW  LL AC  HG
Sbjct: 776 LNSMVKDYGIEPENRHYVCMVDALGRSGRLREAESFINNMHIKPDALVWGTLLAACKIHG 835

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
            +EL +  A+K +ELEP     Y+  S+I A  G W++    R L+   G++KEP  S +
Sbjct: 836 EVELGKVAAKKAIELEPSDAGAYISLSNILAEVGEWDEVEETRKLMKGTGVQKEPGWSSV 895



 Score =  225 bits (573), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 166/582 (28%), Positives = 274/582 (47%), Gaps = 56/582 (9%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E A +VF+     NV  WN ++ G   + +   V  LF  M    +K   ++ S+VL   
Sbjct: 202 EDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCVGFQKPDSYTYSSVLAAC 261

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           A+   ++ G+VV A  I+ G A D F+  ++VD+Y+KCG    A++VF RI +P VV+W 
Sbjct: 262 ASLEKLRFGKVVQARVIKCG-AEDVFVCTAIVDLYAKCGHMAEAMEVFSRIPNPSVVSWT 320

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            +++   +      A +IF  MR S V+ N   +TS++ A            +HA + K 
Sbjct: 321 VMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSMVCEASQVHAWVFKS 380

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFE---AIAHQDSVSWNALFSRFQDYESPDQGL 238
           GF  D+ V  AL+SMY ++G +    +VFE    I  Q+ V  N + + F   + P + +
Sbjct: 381 GFYLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQNIV--NVMITSFSQSKKPGKAI 438

Query: 239 RIFYQMLLKGFKPN---MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
           R+F +ML +G + +   +C+ + +L        +  GKQ+H +T+K  L  +  VG+SL 
Sbjct: 439 RLFTRMLQEGLRTDEFSVCSLLSVLDC------LNLGKQVHGYTLKSGLVLDLTVGSSLF 492

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
            +Y K G LE++   F  +  KD   + ++I+ + + G    A+  F +M  +G   +E 
Sbjct: 493 TLYSKCGSLEESYKLFQGIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDDGTSPDES 552

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
           TLA+ L  CS   +L  G+ +H   ++ G    M + +ALV MY+KCGS+  A  V+   
Sbjct: 553 TLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSALVNMYSKCGSLKLARQVYDRL 612

Query: 416 ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC---------- 465
              D  S + +I GY +HGL +     FR M+  G+  D      +L A           
Sbjct: 613 PELDPVSCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAISSILKAAALSDESSLGA 672

Query: 466 -------------------------SHMGLIEEGKKHFSSIK--KIYGITPTIKHFACMI 498
                                    S  G I++  K FS I    +   T  I  +A   
Sbjct: 673 QVHAYITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQINGPDLIAWTALIASYAQH- 731

Query: 499 DILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
              G+A +  ++ N + E    P+ + +  +L ACS  G +E
Sbjct: 732 ---GKANEALQVYNLMKEKGFKPDKVTFVGVLSACSHGGLVE 770



 Score =  204 bits (520), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 135/480 (28%), Positives = 242/480 (50%), Gaps = 11/480 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A ++F ++P+ +VVS N +++GY +    ++ +  F  M  +  + ++ S  +V+  
Sbjct: 100 MADAAKLFDTIPQPDVVSCNIMISGYKQHRLFEESLRFFSKMHFLGFEANEISYGSVISA 159

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +        ++V    I++G    + +  +L+D++SK    ++A KVF      +V  W
Sbjct: 160 CSALQAPLFSELVCCHTIKMGYFFYEVVESALIDVFSKNLRFEDAYKVFRDSLSANVYCW 219

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSV---KPNQFVLTSLVRATTETGDQRCGESIHAV 177
             II    +    Q    +F+L  E  V   KP+ +  +S++ A       R G+ + A 
Sbjct: 220 NTIIAGALRN---QNYGAVFDLFHEMCVGFQKPDSYTYSSVLAACASLEKLRFGKVVQAR 276

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
           + K G E D  V  A+V +Y + G ++    VF  I +   VSW  + S +         
Sbjct: 277 VIKCGAE-DVFVCTAIVDLYAKCGHMAEAMEVFSRIPNPSVVSWTVMLSGYTKSNDAFSA 335

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           L IF +M   G + N CT   ++ AC   S V    Q+HA   K     +  V  +L+ M
Sbjct: 336 LEIFKEMRHSGVEINNCTVTSVISACGRPSMVCEASQVHAWVFKSGFYLDSSVAAALISM 395

Query: 298 YDKSGCLEDAGVAFDSLAN-KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           Y KSG ++ +   F+ L + +       +ITS++Q+ +   A++ F +M  EG++++EF+
Sbjct: 396 YSKSGDIDLSEQVFEDLDDIQRQNIVNVMITSFSQSKKPGKAIRLFTRMLQEGLRTDEFS 455

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
           + S L   S +  L  G+ +H   +K+G +LD+ V ++L  +Y+KCGS++++  +F+G  
Sbjct: 456 VCSLL---SVLDCLNLGKQVHGYTLKSGLVLDLTVGSSLFTLYSKCGSLEESYKLFQGIP 512

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            +D A W  MI G+ ++G   +A+  F  MLD+G  PDE T   VL+ CS    +  GK+
Sbjct: 513 FKDNACWASMISGFNEYGYLREAIGLFSEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKE 572



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/397 (28%), Positives = 198/397 (49%), Gaps = 10/397 (2%)

Query: 79  RLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAK 138
           R     D FL+ SL+  YS  G   +A K+F  I  PDVV+   +I+   Q    +E+ +
Sbjct: 77  RYLLPFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNIMISGYKQHRLFEESLR 136

Query: 139 IFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYM 198
            F+ M     + N+    S++ A +        E +     K G+    +V +AL+ ++ 
Sbjct: 137 FFSKMHFLGFEANEISYGSVISACSALQAPLFSELVCCHTIKMGYFFYEVVESALIDVFS 196

Query: 199 ENGRVSYGSRVFEAIAHQDSVSWNALFS---RFQDYESPDQGLRIFYQMLLKGFKPNMCT 255
           +N R     +VF      +   WN + +   R Q+Y +      +F++M +   KP+  T
Sbjct: 197 KNLRFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAV---FDLFHEMCVGFQKPDSYT 253

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
           +  +L AC+SL  + FGK + A  IK   + +  V T++VD+Y K G + +A   F  + 
Sbjct: 254 YSSVLAACASLEKLRFGKVVQARVIKCGAE-DVFVCTAIVDLYAKCGHMAEAMEVFSRIP 312

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRL 375
           N  + ++T +++ Y ++ +A  AL+ F++MR  G++ N  T+ S ++ C   + +     
Sbjct: 313 NPSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSMVCEASQ 372

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG-SALRDTASWNMMIGGYVKHG 434
           +H+   K+G  LD  V+ AL++MY+K G ID +E VF+    ++     N+MI  + +  
Sbjct: 373 VHAWVFKSGFYLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQNIVNVMITSFSQSK 432

Query: 435 LGEKALEAFRMMLDEGYVPDEITFVVVLSA--CSHMG 469
              KA+  F  ML EG   DE +   +LS   C ++G
Sbjct: 433 KPGKAIRLFTRMLQEGLRTDEFSVCSLLSVLDCLNLG 469



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 146/297 (49%), Gaps = 1/297 (0%)

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           +Y    D  +  +L+S Y  +G ++  +++F+ I   D VS N + S ++ +   ++ LR
Sbjct: 77  RYLLPFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNIMISGYKQHRLFEESLR 136

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
            F +M   GF+ N  ++  ++ ACS+L    F + +  HTIK       VV ++L+D++ 
Sbjct: 137 FFSKMHFLGFEANEISYGSVISACSALQAPLFSELVCCHTIKMGYFFYEVVESALIDVFS 196

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K+   EDA   F    + +++ +  II    +          F +M +   K + +T +S
Sbjct: 197 KNLRFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCVGFQKPDSYTYSS 256

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L  C+ +  L  G+++ +  +K G   D+FV TA+V +YAKCG + +A  VF       
Sbjct: 257 VLAACASLEKLRFGKVVQARVIKCGA-EDVFVCTAIVDLYAKCGHMAEAMEVFSRIPNPS 315

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
             SW +M+ GY K      ALE F+ M   G   +  T   V+SAC    ++ E  +
Sbjct: 316 VVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSMVCEASQ 372


>gi|334185017|ref|NP_186807.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546765|sp|Q9SS97.2|PP205_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g01580
 gi|332640170|gb|AEE73691.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 188/602 (31%), Positives = 317/602 (52%), Gaps = 8/602 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F  M + ++  WN LL   +     ++V++ F  M   E+K   F+L   LK    
Sbjct: 13  ARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGE 72

Query: 64  SGYIKAGQVVHAMA---IRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              +  G+++H      + LG   D ++  SL+ MY KCG    AL++F  ++ PD+V W
Sbjct: 73  LREVNYGEMIHGFVKKDVTLGS--DLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTW 130

Query: 121 GAIITCLDQQGCCQEAAKIFNLM-RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            ++++  ++ G   +A + F  M   S V P++  L +LV A T+  + R G  +H  + 
Sbjct: 131 SSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVI 190

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           + GF +D  + N+L++ Y ++        +F+ IA +D +SW+ + + +    +  + L 
Sbjct: 191 RRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALL 250

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F  M+  G +PN+ T + +L+AC++  D+  G++ H   I+  L+    V T+LVDMY 
Sbjct: 251 VFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYM 310

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG-IKSNEFTLA 358
           K    E+A   F  +  KD+ ++ A+I+ +   G A  +++ F  M LE   + +   + 
Sbjct: 311 KCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMV 370

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
             L  CS +  L   +  HS  +K G   + F+  +LV +Y++CGS+ +A  VF G AL+
Sbjct: 371 KVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALK 430

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV-PDEITFVVVLSACSHMGLIEEGKKH 477
           DT  W  +I GY  HG G KALE F  M+    V P+E+TF+ +LSACSH GLI EG + 
Sbjct: 431 DTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRI 490

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F  +   Y + P ++H+A ++D+LGR G              +P   +   LLGAC  H 
Sbjct: 491 FKLMVNDYRLAPNLEHYAVLVDLLGRVGDLDTAIEITKRMPFSPTPQILGTLLGACRIHQ 550

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           N E+ E  A+KL ELE      Y+  S++   +G W +   +R  +  +GIKK  + S I
Sbjct: 551 NGEMAETVAKKLFELESNHAGYYMLMSNVYGVKGEWENVEKLRNSVKQRGIKKGLAESLI 610

Query: 598 EV 599
           E+
Sbjct: 611 EI 612



 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 134/467 (28%), Positives = 229/467 (49%), Gaps = 11/467 (2%)

Query: 104 NALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATT 163
           +A ++F  +    +  W  ++  L ++   +E    F+ M     KP+ F L   ++A  
Sbjct: 12  DARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACG 71

Query: 164 ETGDQRCGESIHAVICK-YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWN 222
           E  +   GE IH  + K     SD  VG++L+ MY++ GR+    R+F+ +   D V+W+
Sbjct: 72  ELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWS 131

Query: 223 ALFSRFQDYESPDQGLRIFYQMLLKG-FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK 281
           ++ S F+   SP Q +  F +M++     P+  T I ++ AC+ LS+   G+ +H   I+
Sbjct: 132 SMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIR 191

Query: 282 HSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKC 341
                +  +  SL++ Y KS   ++A   F  +A KD+ +++ +I  Y Q G A  AL  
Sbjct: 192 RGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLV 251

Query: 342 FRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAK 401
           F  M  +G + N  T+   L  C+    L  GR  H +A++ G   ++ VSTALV MY K
Sbjct: 252 FNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMK 311

Query: 402 CGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV-PDEITFVV 460
           C S ++A AVF     +D  SW  +I G+  +G+  +++E F +ML E    PD I  V 
Sbjct: 312 CFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVK 371

Query: 461 VLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLT 520
           VL +CS +G +E+ K   S + K YG        A ++++  R G             L 
Sbjct: 372 VLGSCSELGFLEQAKCFHSYVIK-YGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALK 430

Query: 521 PNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            + +VW +L+     HG      K  + L      ++S+ V P++++
Sbjct: 431 -DTVVWTSLITGYGIHG------KGTKALETFNHMVKSSEVKPNEVT 470



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 2/167 (1%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLKG 60
           E A  VF  +P  +VVSW AL++G+  +G   + +  F  M  +   +     +  VL  
Sbjct: 316 EEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGS 375

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +  G+++  +  H+  I+ G   + F+  SLV++YS+CG   NA KVF  I   D V W
Sbjct: 376 CSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVW 435

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESS-VKPNQFVLTSLVRATTETG 166
            ++IT     G   +A + FN M +SS VKPN+    S++ A +  G
Sbjct: 436 TSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAG 482


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 200/623 (32%), Positives = 323/623 (51%), Gaps = 29/623 (4%)

Query: 4    AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
            A++VF  +P+ + VSWN+++       + +  +HLF  M       + F+L +V    ++
Sbjct: 386  ARQVFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSH 445

Query: 64   -SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
              G ++ G+ VHA  +R G  L  + + +LV MY++ G  ++A  +F      D+V+W  
Sbjct: 446  VRGGVRLGKQVHAYTLRNG-DLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNT 504

Query: 123  IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
            +I+ L Q    +EA     LM    V+P+   L S++ A ++    R G  IH    + G
Sbjct: 505  VISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNG 564

Query: 183  -FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
                ++ VG ALV MY    +   G  VF+ +  +    WNAL + +   E  DQ LR+F
Sbjct: 565  DLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLF 624

Query: 242  YQMLLKG-FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
             +M+ +  F PN  TF  +L AC         + +H + +K     +  V  +L+DMY +
Sbjct: 625  VEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSR 684

Query: 301  SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEG---------- 349
             G +E +   F  +  +D+ ++  +IT     G  + AL    +M R +G          
Sbjct: 685  MGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDY 744

Query: 350  -------IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC 402
                    K N  TL + L GC+ +A L  G+ +H+ AVK    +D+ V +ALV MYAKC
Sbjct: 745  EDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKC 804

Query: 403  GSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG------YVPDEI 456
            G ++ A  VF    +R+  +WN++I  Y  HG GE+ALE FR+M   G        P+E+
Sbjct: 805  GCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEV 864

Query: 457  TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE 516
            T++ + +ACSH G+++EG   F ++K  +G+ P   H+AC++D+LGR+G+  E    I  
Sbjct: 865  TYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINT 924

Query: 517  TKLTPNAL-VWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWND 575
                 N +  W +LLGAC  H ++E  E  A+ L  LEP + S+YV  S+I ++ G W+ 
Sbjct: 925  MPSNLNKVDAWSSLLGACRIHQSVEFGEIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQ 984

Query: 576  FSGVRALLSSQGIKKEPSCSWIE 598
              GVR  +   G++KEP CSWIE
Sbjct: 985  ALGVRKKMKEMGVRKEPGCSWIE 1007



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 149/547 (27%), Positives = 247/547 (45%), Gaps = 28/547 (5%)

Query: 18  SWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMA 77
            W  LL     S   +  +  + +M         F+   VLK  A    +  G+ +HA  
Sbjct: 297 QWIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQIHAHV 356

Query: 78  IRLGCALDKFLSC--SLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQE 135
            + G A    ++   SLV+MY KCG    A +VF  I D D V+W ++I  L +    + 
Sbjct: 357 FKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWEL 416

Query: 136 AAKIFNLMRESSVKPNQFVLTSLVRATTET-GDQRCGESIHAVICKYGFESDTLVGNALV 194
           +  +F LM   +V P  F L S+  A +   G  R G+ +HA   + G +  T   NALV
Sbjct: 417 SLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNG-DLRTYTNNALV 475

Query: 195 SMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMC 254
           +MY   GRV+    +F     +D VSWN + S     +  ++ L   Y M++ G +P+  
Sbjct: 476 TMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGV 535

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKH-SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
           T   +L ACS L  +  G+++H + +++  L  N  VGT+LVDMY      +   + FD 
Sbjct: 536 TLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDG 595

Query: 314 LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG-IKSNEFTLASCLNGCSPVATLAN 372
           +  + +  + A++  YA+    + AL+ F +M  E     N  T AS L  C      ++
Sbjct: 596 VVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSD 655

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
              +H   VK G   D +V  AL+ MY++ G ++ ++ +F     RD  SWN MI G + 
Sbjct: 656 KEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIV 715

Query: 433 HGLGEKALEAFRMML---------------DEGYV---PDEITFVVVLSACSHMGLIEEG 474
            G  + AL     M                D+G V   P+ +T + VL  C+ +  + +G
Sbjct: 716 CGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKG 775

Query: 475 KK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           K+ H  ++K+   +   +   + ++D+  + G          +  +  N + W  L+ A 
Sbjct: 776 KEIHAYAVKQKLAMDVAVG--SALVDMYAKCGCLNLASRVFDQMPIR-NVITWNVLIMAY 832

Query: 534 SWHGNIE 540
             HG  E
Sbjct: 833 GMHGKGE 839



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 132/287 (45%), Gaps = 29/287 (10%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMK------------DMEK- 47
           +E++K +F  M + ++VSWN ++ G    G     ++L   M+            D E  
Sbjct: 688 VEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDD 747

Query: 48  -----KFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLA 102
                K +  +L TVL G A    +  G+ +HA A++   A+D  +  +LVDMY+KCG  
Sbjct: 748 GGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCL 807

Query: 103 DNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLM------RESSVKPNQFVLT 156
           + A +VF ++   +V+ W  +I      G  +EA ++F +M          ++PN+    
Sbjct: 808 NLASRVFDQMPIRNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYI 867

Query: 157 SLVRATTETGDQRCGESI-HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAI-A 214
           ++  A + +G    G  + H +   +G E        LV +   +GRV     +   + +
Sbjct: 868 AIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPS 927

Query: 215 HQDSV-SWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVIL 260
           + + V +W++L    + ++S + G      + +   +PN+ +  V++
Sbjct: 928 NLNKVDAWSSLLGACRIHQSVEFGEIAAKHLFV--LEPNVASHYVLM 972


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 188/608 (30%), Positives = 329/608 (54%), Gaps = 10/608 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKF--SKFSLSTVL 58
           ++ A  +F  MPE N++SWN+L+ G++E+G   +    F S+ +          ++ T+L
Sbjct: 261 LDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLL 320

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
              +  G +  G V+H MA++LG   +  +  +L+DMYSKCG    A  +F +I++  VV
Sbjct: 321 PVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVV 380

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMR-----ESSVKPNQFVLTSLVRATTETGDQRCGES 173
           +W ++I    ++G   E    F+L+R     E  ++ N+  + +L+ A  E  +     +
Sbjct: 381 SWNSMIGAYSREGFVFET---FDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRA 437

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           +H    ++ F+   L+ NA ++ Y + G + +   VF  +  +   SWNA+         
Sbjct: 438 LHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGD 497

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
           P + L  +++M   G  P+  + + +L AC  L  + +GK++H   +++ L+ N  V  S
Sbjct: 498 PIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVS 557

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           L+ +Y            F+ + +K+   + A+++ Y+Q      AL  FR+M  +G++ +
Sbjct: 558 LLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPD 617

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
           E  +AS L  CS ++ L  G+ +H  A+K   + D FV+ +L+ MYAK G +  ++ +F 
Sbjct: 618 EIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFN 677

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
               ++ ASWN+MI G+  HG G KA+E F  M      PD  TF+ VL AC H GL+ E
Sbjct: 678 RLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSE 737

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           G  + + ++ +Y + P ++H+AC+ID+LGRAG+  E  NFI E    P+A +W +LL + 
Sbjct: 738 GLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSS 797

Query: 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPS 593
             + ++E+ EK AEKLL LE     +Y+  S++ AT G+W+    VR  +    ++K+  
Sbjct: 798 ITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVG 857

Query: 594 CSWIEVDG 601
           CSWIE+ G
Sbjct: 858 CSWIELRG 865



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 127/480 (26%), Positives = 245/480 (51%), Gaps = 9/480 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDM-EKKFSKFSLSTVLKGFA 62
           ++ VF  +   N+  WNAL++GY  +    + +H F  +  + E +   F+   ++K   
Sbjct: 162 SRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACT 221

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
               I  G+ VH MA+++G  +D F+  +++ +Y KCG  D A+++F ++ + ++++W +
Sbjct: 222 GKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNS 281

Query: 123 IITCLDQQGCCQEAAKIFNLMRES--SVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
           +I    + G   EA + F  + ES   + P+   + +L+   +  G+   G  IH +  K
Sbjct: 282 LIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVK 341

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD----YESPDQ 236
            G   + +V NAL+ MY + G +S  + +F  I ++  VSWN++   +      +E+ D 
Sbjct: 342 LGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDL 401

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
             +++ +  L   + N  T + +L AC   S++   + LH ++++HS     ++  + + 
Sbjct: 402 LRKMWMEEEL--MEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIA 459

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
            Y K G L  A   F  +  K + ++ A+I  +AQ G+   AL  + +M   GI  ++F+
Sbjct: 460 AYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFS 519

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
           + S L  C  +  L  G+ +H   ++ G  ++ FV+ +L+++Y  C         F+   
Sbjct: 520 IVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMG 579

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            +++  WN M+ GY ++ L  +AL  FR ML +G  PDEI    +L ACS +  +  GK+
Sbjct: 580 DKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKE 639



 Score =  207 bits (528), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 120/397 (30%), Positives = 206/397 (51%), Gaps = 5/397 (1%)

Query: 85  DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIF-NLM 143
           D  L+  L+ MYS CG    +  VF R+ + ++  W A+++   +     EA   F  L+
Sbjct: 142 DFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELI 201

Query: 144 RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRV 203
             +  +P+ F    L++A T   D   G+S+H +  K G   D  VGNA++++Y + G +
Sbjct: 202 SVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFL 261

Query: 204 SYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK--GFKPNMCTFIVILK 261
                +F+ +  Q+ +SWN+L   F +     +  R F  +L    G  P++ T + +L 
Sbjct: 262 DEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLP 321

Query: 262 ACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFA 321
            CS   +V  G  +H   +K  L    +V  +L+DMY K GCL +A + F  + NK + +
Sbjct: 322 VCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVS 381

Query: 322 YTAIITSYAQAGEAEMALKCFRKMRLEG--IKSNEFTLASCLNGCSPVATLANGRLLHSI 379
           + ++I +Y++ G         RKM +E   ++ NE T+ + L  C   + L + R LH  
Sbjct: 382 WNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGY 441

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
           +++        ++ A +A YAKCGS+  AE VF G   +  +SWN +IGG+ ++G   KA
Sbjct: 442 SLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKA 501

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
           L+ +  M   G +PD+ + V +L AC  +GL++ GK+
Sbjct: 502 LDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKE 538



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 161/314 (51%), Gaps = 6/314 (1%)

Query: 158 LVRATTETGDQRCGESIHAVIC-KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ 216
           L++   +  +   G  +  ++C    F  D ++   L++MY   G       VF+ + ++
Sbjct: 113 LLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNK 172

Query: 217 DSVSWNALFSRFQDYESPDQGLRIFYQML-LKGFKPNMCTFIVILKACSSLSDVGFGKQL 275
           +   WNAL S +   E  D+ +  F +++ +  F+P+  TF  ++KAC+   D+  GK +
Sbjct: 173 NLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSV 232

Query: 276 HAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEA 335
           H   +K  L  +  VG +++ +Y K G L++A   FD +  ++L ++ ++I  +++ G  
Sbjct: 233 HGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFW 292

Query: 336 EMALKCFRKM--RLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST 393
             A + FR +    +G+  +  T+ + L  CS    +  G ++H +AVK G + ++ V  
Sbjct: 293 LEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCN 352

Query: 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML--DEGY 451
           AL+ MY+KCG + +A  +F+    +   SWN MIG Y + G   +  +  R M   +E  
Sbjct: 353 ALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELM 412

Query: 452 VPDEITFVVVLSAC 465
             +E+T + +L AC
Sbjct: 413 EVNEVTILNLLPAC 426



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 155/309 (50%), Gaps = 8/309 (2%)

Query: 258 VILKACSSLSDVGFGKQLHAHT-IKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
           ++L+ C    +V  G++L     +     G+ V+ T L+ MY   G   ++ + FD L N
Sbjct: 112 MLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLN 171

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFTLASCLNGCSPVATLANGRL 375
           K+LF + A+++ Y +    + A+  F ++  +   + + FT    +  C+    +  G+ 
Sbjct: 172 KNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKS 231

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           +H +AVK G ++D+FV  A++A+Y KCG +D+A  +F     ++  SWN +I G+ ++G 
Sbjct: 232 VHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGF 291

Query: 436 GEKALEAFRMMLD--EGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIK 492
             +A  AFR +L+  +G +PD  T V +L  CS  G ++ G   H  ++K   G+   + 
Sbjct: 292 WLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVK--LGLVHELM 349

Query: 493 HFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLEL 552
               +ID+  + G  +E      + +   + + W +++GA S  G +        K+   
Sbjct: 350 VCNALIDMYSKCGCLSEAAILFRKIE-NKSVVSWNSMIGAYSREGFVFETFDLLRKMWME 408

Query: 553 EPKMESNYV 561
           E  ME N V
Sbjct: 409 EELMEVNEV 417


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 196/637 (30%), Positives = 333/637 (52%), Gaps = 45/637 (7%)

Query: 4   AKRVFKSMP--ELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           A+ VF+SM   + NVVSWNA++  YA++G   + + L+  M          +  +VL   
Sbjct: 61  ARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGAC 120

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKF--LSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           ++   +  G+ +H      G  LD F  L+ +LV MY++ G   +A ++F  ++  D  +
Sbjct: 121 SS---LAQGREIHNRVFYSG--LDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETS 175

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W A+I    Q G    A +IF  M+   +KPN     +++   +       G  IHA I 
Sbjct: 176 WNAVILAHSQSGDWSGALRIFKEMK-CDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIV 234

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
             GF+SD +V  AL++MY + G       VF+ +  +D VSWN +   +       + L 
Sbjct: 235 ANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALE 294

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           ++ ++ ++GFK    TF+ IL ACSS+  +  G+ +H+H ++  LD    V T+LV+MY 
Sbjct: 295 LYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYA 354

Query: 300 KSGCLEDAGVAFDSLANKDLFAYT----------------------------------AI 325
           K G LE+A   F+++ N+D  A++                                  A+
Sbjct: 355 KCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAM 414

Query: 326 ITSYAQAGEAEMALKCFRKMR-LEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           IT+Y Q G A  A+K FR+M    G+K +  T  + L  C+ +  L+  + LH+   ++ 
Sbjct: 415 ITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESE 474

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
              ++ V+  L+ MYA+CGS+++AE +F  +  +   SW  M+  + ++G   +AL+ F+
Sbjct: 475 LESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQ 534

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA 504
            M  EG  PD++T+  +L  C+H G +E+G ++F+ + +++G+ PT  HFA M+D+LGR+
Sbjct: 535 EMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFAAMVDLLGRS 594

Query: 505 GKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564
           G+  + +  +      P+ + W   L AC  HG +EL E  AE++ EL+P   + Y+  S
Sbjct: 595 GRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMS 654

Query: 565 DISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           +I A  G W   + VR  +  +G+KK P  S+IEVDG
Sbjct: 655 NIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDG 691



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 159/565 (28%), Positives = 262/565 (46%), Gaps = 56/565 (9%)

Query: 45  MEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCAL---DKFLSCSLVDMYSKCGL 101
           M+++    +  TVL   ++ G +  G+ +H    R+ C+    D  +  +L+ MY KC  
Sbjct: 1   MDRQPDNVTFLTVLCSCSSCGDVAEGRALHE---RIRCSRFERDTMVGNALISMYGKCDS 57

Query: 102 ADNALKVFYRI--KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLV 159
             +A  VF  +  +  +VV+W A+I    Q G   EA  ++  M    +  +     S++
Sbjct: 58  LVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVL 117

Query: 160 RATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSV 219
            A +       G  IH  +   G +S   + NALV+MY   G V    R+F+++  +D  
Sbjct: 118 GACSSLAQ---GREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDET 174

Query: 220 SWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHT 279
           SWNA+             LRIF +M     KPN  T+I ++   S+   +  G+++HA  
Sbjct: 175 SWNAVILAHSQSGDWSGALRIFKEMKCD-MKPNSTTYINVISGFSTPEVLPEGRKIHAEI 233

Query: 280 IKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMAL 339
           + +  D + VV T+L++MY K G   +A   FD +  +D+ ++  +I  Y Q G+   AL
Sbjct: 234 VANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEAL 293

Query: 340 KCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMY 399
           + ++K+ +EG K  + T  S L  CS V  LA GRL+HS  ++ G   ++ V+TALV MY
Sbjct: 294 ELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMY 353

Query: 400 AKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEA----------------- 442
           AKCGS+++A  VF     RD  +W+ +IG Y  +G G+ A +A                 
Sbjct: 354 AKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNA 413

Query: 443 -----------------FRMMLD-EGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
                            FR M    G  PD +TF+ VL AC+ +G + E K   + I + 
Sbjct: 414 MITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISE- 472

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEK 544
             +   +     +I++  R G   E E      K     + W  ++ A S +G       
Sbjct: 473 SELESNVVVTNTLINMYARCGSLEEAERLFAAAK-EKTVVSWTAMVAAFSQYGRY----- 526

Query: 545 DAEKLLELEPKMESNYVFPSDISAT 569
              + L+L  +M+   V P D++ T
Sbjct: 527 --AEALDLFQEMDLEGVKPDDVTYT 549



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 109/258 (42%), Gaps = 37/258 (14%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESG---DGQKVMHLF------------------ 39
           +E A++VF +M   + V+W+ L+  YA +G   D +K   +F                  
Sbjct: 359 LEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTY 418

Query: 40  ----CSMKDME----------KKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALD 85
               C++  M+           K    +   VL+  A+ G +   + +HA         +
Sbjct: 419 VQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESN 478

Query: 86  KFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRE 145
             ++ +L++MY++CG  + A ++F   K+  VV+W A++    Q G   EA  +F  M  
Sbjct: 479 VVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDL 538

Query: 146 SSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK-YGFESDTLVGNALVSMYMENGRVS 204
             VKP+    TS++   T  G    G      + + +G         A+V +   +GR+ 
Sbjct: 539 EGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFAAMVDLLGRSGRLF 598

Query: 205 YGSRVFEAIAHQ-DSVSW 221
               + E++  + D V+W
Sbjct: 599 DAKELLESMPFEPDPVAW 616


>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 833

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 187/597 (31%), Positives = 313/597 (52%), Gaps = 1/597 (0%)

Query: 4   AKRVFKSMPEL-NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           A+ +FK + +  N+V+WN ++ G+ E+G  +  +  +   K    K    S +  L    
Sbjct: 193 ARYLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACG 252

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
              ++  G+ VH  AI++G   D ++  SL+ MY KC + ++A KVF  + D ++  W A
Sbjct: 253 QGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNA 312

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I+     G   +A +I+  M+  +V  + F + +++ +++  G    G  IH  I K  
Sbjct: 313 LISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRP 372

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            +S   + +AL++MY + G  +Y + +F  +  +D V+W ++ S F       + L  F 
Sbjct: 373 LQSSITIQSALLTMYSKFGDSNYANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFR 432

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            M     KP+      I+ AC+ L  V  G  +H   IK  L  +  V +SL+DMY K G
Sbjct: 433 AMEADLVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFG 492

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
             E AG  F  +  K+L A+ +II+ Y +    ++++  F ++    +  +  +  S L 
Sbjct: 493 FPERAGNIFSDMPLKNLVAWNSIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLA 552

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
             S VA L  G+ +H   V+     D+ V   L+ MY KCG +  A+ +F+  + ++  +
Sbjct: 553 AISSVAALLKGKSVHGYLVRLWIPFDLQVENTLIDMYIKCGLLKYAQHIFERISEKNLVA 612

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN MIGGY  HG   KA+E F  M   G  PD++TF+ +LS+C+H GLIEEG   F  +K
Sbjct: 613 WNSMIGGYGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLSSCNHSGLIEEGLHLFEMMK 672

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
             +GI P ++H+  ++D+ GRAG   +  +F+    + P+  +W +LL +C  H N+EL 
Sbjct: 673 MKFGIEPRMEHYVNIVDLYGRAGCLGDAYSFVKNMPVEPDRSIWLSLLCSCKIHLNLELG 732

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           E  A KLL +EP   SNYV   ++      W+  + +RA +  +G+KK P CSWIEV
Sbjct: 733 EMVANKLLNMEPSKGSNYVQLLNLYGEAELWDRTANLRASMKEKGLKKTPGCSWIEV 789



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 144/570 (25%), Positives = 270/570 (47%), Gaps = 35/570 (6%)

Query: 4   AKRVFKSMPEL-----NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVL 58
           A +VF  +P+      +V  WN++++GY   G  ++ M  F  M+               
Sbjct: 107 AVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQ--------------- 151

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD-PDV 117
               +SGY K G+ +H+  +R     D FL  +L+D Y KCG    A  +F ++KD  ++
Sbjct: 152 ----SSGY-KEGKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNI 206

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           VAW  +I    + G  + + + + L +  +VK      T  + A  +      G+ +H  
Sbjct: 207 VAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCD 266

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
             K GFE D  V  +L++MY +   +    +VF  +  ++   WNAL S +         
Sbjct: 267 AIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDA 326

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           LRI+ QM L     +  T + +L + S       G+ +H   +K  L  +  + ++L+ M
Sbjct: 327 LRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTM 386

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K G    A   F ++  +D+ A+ ++I+ + Q  + + AL  FR M  + +K +   +
Sbjct: 387 YSKFGDSNYANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIM 446

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           AS ++ C+ +  +  G  +H   +K+G  LD+FV+++L+ MY+K G  + A  +F    L
Sbjct: 447 ASIISACTGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFSDMPL 506

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           ++  +WN +I  Y ++ L + ++  F  +L     PD ++F  VL+A S +  + +GK  
Sbjct: 507 KNLVAWNSIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVAALLKGKSV 566

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
              + +++ I   ++    +ID+  + G   +    I E     N + W +++G    HG
Sbjct: 567 HGYLVRLW-IPFDLQVENTLIDMYIKCG-LLKYAQHIFERISEKNLVAWNSMIGGYGSHG 624

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDIS 567
                  +  K +EL  +M S+ + P D++
Sbjct: 625 -------ECSKAIELFDEMRSSGIKPDDVT 647



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/425 (27%), Positives = 212/425 (49%), Gaps = 2/425 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A++VF  +P+  +  WNAL++ Y  +G     + ++  MK        F++  VL  
Sbjct: 292 IESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTS 351

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            + +G    G+++H   ++        +  +L+ MYSK G ++ A  +F  +K+ DVVAW
Sbjct: 352 SSMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKERDVVAW 411

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
           G++I+   Q    +EA   F  M    VKP+  ++ S++ A T       G +IH  + K
Sbjct: 412 GSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISACTGLEKVDLGCTIHGFVIK 471

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G + D  V ++L+ MY + G       +F  +  ++ V+WN++ S +     PD  + +
Sbjct: 472 SGLQLDVFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAWNSIISCYCRNNLPDLSINL 531

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F Q+L     P+  +F  +L A SS++ +  GK +H + ++  +  +  V  +L+DMY K
Sbjct: 532 FSQVLRNDLYPDSVSFTSVLAAISSVAALLKGKSVHGYLVRLWIPFDLQVENTLIDMYIK 591

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L+ A   F+ ++ K+L A+ ++I  Y   GE   A++ F +MR  GIK ++ T  S 
Sbjct: 592 CGLLKYAQHIFERISEKNLVAWNSMIGGYGSHGECSKAIELFDEMRSSGIKPDDVTFLSL 651

Query: 361 LNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR- 418
           L+ C+    +  G  L   + +K G    M     +V +Y + G + DA +  K   +  
Sbjct: 652 LSSCNHSGLIEEGLHLFEMMKMKFGIEPRMEHYVNIVDLYGRAGCLGDAYSFVKNMPVEP 711

Query: 419 DTASW 423
           D + W
Sbjct: 712 DRSIW 716



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 139/558 (24%), Positives = 256/558 (45%), Gaps = 38/558 (6%)

Query: 50  SKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF 109
           ++F+  ++LK  A+   ++ G+ +H+  I  G   D++++ SL+++Y KCG   +A+KVF
Sbjct: 52  TRFTYPSLLKACASLSNLQYGKTIHSSIITTGLHSDQYITSSLINIYVKCGTFTDAVKVF 111

Query: 110 YRIKDP-----DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTE 164
            ++        DV  W +II    + G  +E    F  M+ S  K               
Sbjct: 112 DQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQSSGYKE-------------- 157

Query: 165 TGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDS-VSWNA 223
                 G+ IH+ I +     D  +  AL+  Y + GR +    +F+ +  + + V+WN 
Sbjct: 158 ------GKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNV 211

Query: 224 LFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS 283
           +   F +    +  L  +     +  K    +F   L AC     V FGKQ+H   IK  
Sbjct: 212 MIGGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIKVG 271

Query: 284 LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFR 343
            + +  V TSL+ MY K   +E A   F+ + +K++  + A+I++Y   G A  AL+ ++
Sbjct: 272 FEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYK 331

Query: 344 KMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403
           +M+L  + S+ FT+ + L   S       GRL+H+  VK      + + +AL+ MY+K G
Sbjct: 332 QMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFG 391

Query: 404 SIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
             + A ++F     RD  +W  +I G+ ++   ++AL+ FR M  +   PD      ++S
Sbjct: 392 DSNYANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIIS 451

Query: 464 ACSHMGLIEEG-KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPN 522
           AC+ +  ++ G   H   IK   G+   +   + ++D+  + G      N  ++  L  N
Sbjct: 452 ACTGLEKVDLGCTIHGFVIKS--GLQLDVFVASSLLDMYSKFGFPERAGNIFSDMPLK-N 508

Query: 523 ALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRAL 582
            + W +++ +C    N+       +  + L  ++  N ++P  +S T       S V AL
Sbjct: 509 LVAWNSII-SCYCRNNL------PDLSINLFSQVLRNDLYPDSVSFTS-VLAAISSVAAL 560

Query: 583 LSSQGIKKEPSCSWIEVD 600
           L  + +       WI  D
Sbjct: 561 LKGKSVHGYLVRLWIPFD 578



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 111/455 (24%), Positives = 214/455 (47%), Gaps = 43/455 (9%)

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I  L QQ    EA K++    +S V   +F   SL++A     + + G++IH+ I   G 
Sbjct: 28  IKSLVQQRQYIEALKLYT---KSPVYTTRFTYPSLLKACASLSNLQYGKTIHSSIITTGL 84

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFE-----AIAHQDSVSWNALFSRFQDYESPDQGL 238
            SD  + ++L+++Y++ G  +   +VF+      ++  D   WN++   +  +   ++G+
Sbjct: 85  HSDQYITSSLINIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGM 144

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
             F +M   G+K                     GKQ+H++ +++ L+ +  + T+L+D Y
Sbjct: 145 VQFGRMQSSGYKE--------------------GKQIHSYIVRNMLNFDPFLETALIDTY 184

Query: 299 DKSGCLEDAGVAFDSLANK-DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
            K G   +A   F  L ++ ++ A+  +I  + + G  E +L+ +   + E +K    + 
Sbjct: 185 FKCGRPTEARYLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSSSF 244

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
              L+ C     ++ G+ +H  A+K G   D +V T+L+ MY KC  I+ AE VF     
Sbjct: 245 TCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPD 304

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK- 476
           ++   WN +I  YV +G    AL  ++ M     + D  T + VL++ S  GL + G+  
Sbjct: 305 KEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLI 364

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL-GACSW 535
           H   +K+    + TI+  + ++ +  + G  +   N I  T    + + W +++ G C  
Sbjct: 365 HTEIVKRPLQSSITIQ--SALLTMYSKFGD-SNYANSIFSTMKERDVVAWGSVISGFC-- 419

Query: 536 HGNIELDEKDAEKLLELEPKMESNYVFP-SDISAT 569
                   +  ++ L+    ME++ V P SDI A+
Sbjct: 420 ------QNRKYKEALDFFRAMEADLVKPDSDIMAS 448


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 195/608 (32%), Positives = 322/608 (52%), Gaps = 15/608 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AK  F ++ + N+ SW  L+  +A SG  ++ +     M+    +    +  T L    +
Sbjct: 11  AKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGD 70

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI-KDPDVVAWGA 122
              ++ G  +H M +     +D  +S +L++MY KCG   +A +VF ++ +  +V++W  
Sbjct: 71  PESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSI 130

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +       G   EA + F  M    +K  +  + +++ A +     + G  IH+ I   G
Sbjct: 131 MAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIALSG 190

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAI--AHQDSVSWNALFSRFQDYESPDQGLRI 240
           FES+ LV NA+++MY   G V    +VF+A+  A +D VSWN + S +   +     +++
Sbjct: 191 FESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQL 250

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           + +M L+   P+  T++ +L ACSS  DVG G+ LH   +   L+ N +VG +LV MY K
Sbjct: 251 YQRMQLR---PDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAK 307

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEG------IKSN 353
            G   +A   FD +  + + ++T II++Y +      A   F++M  LE       +K +
Sbjct: 308 CGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPD 367

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
                + LN C+ V+ L  G+++   A   G   D  V TA+V +Y KCG I++A  +F 
Sbjct: 368 ALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFD 427

Query: 414 GSALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE 472
               R D   WN MI  Y + G   +AL+ F  M  EG  PD  +FV +L ACSH GL +
Sbjct: 428 AVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLED 487

Query: 473 EGKKHFSSIKKIY-GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLG 531
           +GK +F+S+   Y  +T TI+HF C+ D+LGR G+  E E F+ +  + P+A+ W +LL 
Sbjct: 488 QGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLA 547

Query: 532 ACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
           AC  H +++  ++ A KLL LEP+  + YV  S+I A   +W+  + VR  ++ QG+KKE
Sbjct: 548 ACRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKE 607

Query: 592 PSCSWIEV 599
              S IE+
Sbjct: 608 RGVSTIEI 615



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/483 (25%), Positives = 227/483 (46%), Gaps = 21/483 (4%)

Query: 95  MYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFV 154
           MY+ C    +A   F  ++  ++ +W  ++      G  +E  +    MR+  V+P+   
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 155 LTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA 214
             + + +  +    R G  IH ++     E D  V NAL++MY + G +S+  RVF  + 
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKME 120

Query: 215 H-QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGK 273
             ++ +SW+ +      + +  + LR F  MLL G K      + IL ACSS + V  G+
Sbjct: 121 RTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGR 180

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL--ANKDLFAYTAIITSYAQ 331
            +H+       +   +V  +++ MY + G +E+A   FD++  A +D+ ++  ++++Y  
Sbjct: 181 MIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVH 240

Query: 332 AGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFV 391
               + A++ +++M+L   + ++ T  S L+ CS    +  GR+LH   V      ++ V
Sbjct: 241 NDRGKDAIQLYQRMQL---RPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIV 297

Query: 392 STALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD--- 448
             ALV+MYAKCGS  +A AVF     R   SW  +I  YV+  L  +A   F+ ML+   
Sbjct: 298 GNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEK 357

Query: 449 ----EGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA 504
               +   PD + FV +L+AC+ +  +E+GK   S      G++        ++++ G+ 
Sbjct: 358 NGSSQRVKPDALAFVTILNACADVSALEQGKM-VSEQAASCGLSSDKAVGTAVVNLYGKC 416

Query: 505 GKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564
           G+  E           P+  +W  ++   +  G        + + L+L  +ME   V P 
Sbjct: 417 GEIEEARRIFDAVCSRPDVQLWNAMIAVYAQFGQ-------SHEALKLFWRMEMEGVRPD 469

Query: 565 DIS 567
             S
Sbjct: 470 SFS 472


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 170/450 (37%), Positives = 264/450 (58%), Gaps = 3/450 (0%)

Query: 154 VLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAI 213
           +  +L++  T       G+ IHA++    F  D ++ N L+++Y + G + Y  ++F+ +
Sbjct: 17  ICHTLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEM 76

Query: 214 AHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL--SDVGF 271
           + +D V+W AL + +  ++ P   L +  +ML  G KPN  T   +LKA S +  +DV  
Sbjct: 77  SSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQ 136

Query: 272 GKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQ 331
           G+QLH   +++  D N  V  +++DMY +   LE+A + FD + +K+  ++ A+I  YA+
Sbjct: 137 GRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYAR 196

Query: 332 AGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFV 391
            G+ + A   F  M  E +K   FT +S L  C+ + +L  G+ +H++ +K G  L  FV
Sbjct: 197 KGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFV 256

Query: 392 STALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGY 451
              L+ MYAK GSI+DA+ VF   A RD  SWN M+ GY +HGLG+ AL+ F  ML    
Sbjct: 257 GNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRI 316

Query: 452 VPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIE 511
            P++ITF+ VL+ACSH GL++EG+ +F  +KK Y + P I H+  M+D+LGRAG      
Sbjct: 317 APNDITFLCVLTACSHAGLLDEGRHYFDMMKK-YNVEPQISHYVTMVDLLGRAGHLDRAI 375

Query: 512 NFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQG 571
            FI+E  + P A VW  LLGAC  H N+EL    AE + EL+      +V   +I A  G
Sbjct: 376 QFISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYALAG 435

Query: 572 RWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           RWND + VR ++   G+KKEP+CSW+E++ 
Sbjct: 436 RWNDAAKVRKMMKESGVKKEPACSWVEMEN 465



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/381 (29%), Positives = 189/381 (49%), Gaps = 3/381 (0%)

Query: 56  TVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP 115
           T+LK   +   +  G+++HA+ +      D  +  +L+++Y+KCG    A K+F  +   
Sbjct: 20  TLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSR 79

Query: 116 DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG--DQRCGES 173
           DVV W A+IT   Q    Q+A  +   M    +KPNQF L SL++A +  G  D   G  
Sbjct: 80  DVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQ 139

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           +H +  +YG++S+  V  A++ MY     +     +F+ +  ++ VSWNAL + +     
Sbjct: 140 LHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQ 199

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
            D+   +F  ML +  KP   T+  +L AC+S+  +  GK +HA  IK        VG +
Sbjct: 200 GDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNT 259

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           L+DMY KSG +EDA   FD LA +D+ ++ +++T Y+Q G  ++AL+ F +M    I  N
Sbjct: 260 LLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPN 319

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
           + T    L  CS    L  GR    +  K      +     +V +  + G +D A     
Sbjct: 320 DITFLCVLTACSHAGLLDEGRHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFIS 379

Query: 414 GSALRDTAS-WNMMIGGYVKH 433
              ++ TA+ W  ++G    H
Sbjct: 380 EMPIKPTAAVWGALLGACRMH 400



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 165/306 (53%), Gaps = 2/306 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F  M   +VV+W AL+ GY++    Q  + L   M  +  K ++F+L+++LK  + 
Sbjct: 69  ARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASG 128

Query: 64  SGY--IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
            G   +  G+ +H + +R G   + ++SC+++DMY++C   + A  +F  +   + V+W 
Sbjct: 129 VGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWN 188

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           A+I    ++G   +A  +F+ M   +VKP  F  +S++ A    G    G+ +HA++ K+
Sbjct: 189 ALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKW 248

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G +    VGN L+ MY ++G +    +VF+ +A +D VSWN++ + +  +      L+ F
Sbjct: 249 GEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRF 308

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +ML     PN  TF+ +L ACS    +  G+       K++++       ++VD+  ++
Sbjct: 309 EEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKKYNVEPQISHYVTMVDLLGRA 368

Query: 302 GCLEDA 307
           G L+ A
Sbjct: 369 GHLDRA 374



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 113/229 (49%), Gaps = 7/229 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ +F  M   N VSWNAL+ GYA  G G K   LF +M     K + F+ S+VL  
Sbjct: 169 LEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCA 228

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+ G ++ G+ VHA+ I+ G  L  F+  +L+DMY+K G  ++A KVF R+   DVV+W
Sbjct: 229 CASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSW 288

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +++T   Q G  + A + F  M  + + PN      ++ A +  G    G     ++ K
Sbjct: 289 NSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKK 348

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQD----SVSWNALF 225
           Y  E      +  V+M    GR  +  R  + I+       +  W AL 
Sbjct: 349 YNVEPQI---SHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALL 394


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 203/599 (33%), Positives = 318/599 (53%), Gaps = 19/599 (3%)

Query: 15  NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKF-----SLSTVLKGFANSGYIKA 69
           N VSWN+++  ++++G  ++   L   M + E     F     +L TVL   A    I  
Sbjct: 2   NFVSWNSMIRVFSDNGFSEESFLLLGEMME-ENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
           G+ VH  A++L    +  L+ +L+DMYSKCG   NA  +F    + +VV+W  ++     
Sbjct: 61  GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 120

Query: 130 QGCCQEAAKIFNLMRE-----SSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
           +G   +    F+++R+       VK ++  + + V            + +H    K  F 
Sbjct: 121 EG---DTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFV 177

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
            + LV NA V+ Y + G +SY  RVF  I  +   SWNAL         P   L    QM
Sbjct: 178 YNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQM 237

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
            + G  P+  T   +L ACS L  +  GK++H   I++ L+ +  V  S++ +Y   G L
Sbjct: 238 KISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGEL 297

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
                 FD++ +K L ++  +IT Y Q G  + AL  FR+M L GI+    ++      C
Sbjct: 298 CTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGAC 357

Query: 365 SPVATLANGRLLHSIAVKTGHLL--DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
           S + +L  GR  H+ A+K  HLL  D F++ +L+ MYAK GSI  +  VF G   + TAS
Sbjct: 358 SLLPSLRLGREAHAYALK--HLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTAS 415

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN MI GY  HGL ++A++ F  M   G+ PD++TF+ VL+AC+H GLI EG ++   +K
Sbjct: 416 WNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMK 475

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFIT-ETKLTPNALVWENLLGACSWHGNIEL 541
             +G+ P +KH+AC+ID+LGRAG+  +    +  E     +  +W++LL +C  H N+E+
Sbjct: 476 SSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEM 535

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
            EK A KL ELEP+   NYV  S++ A  G+W D   VR  ++   ++K+  CSWIE++
Sbjct: 536 GEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELN 594



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 102/411 (24%), Positives = 197/411 (47%), Gaps = 3/411 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM--KDMEKKFSKFSLSTVLKGF 61
           A+ +FK     NVVSWN ++ G++  GD      +   M     + K  + ++   +   
Sbjct: 96  AQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVC 155

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
            +  ++ + + +H  +++     ++ ++ + V  Y+KCG    A +VF+ I+   V +W 
Sbjct: 156 FHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWN 215

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           A+I    Q    + +      M+ S + P+ F + SL+ A ++    R G+ +H  I + 
Sbjct: 216 ALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRN 275

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
             E D  V  +++S+Y+  G +     +F+A+  +  VSWN + + +     PD+ L +F
Sbjct: 276 WLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVF 335

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            QM+L G +    + + +  ACS L  +  G++ HA+ +KH L+ +  +  SL+DMY K+
Sbjct: 336 RQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKN 395

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G +  +   F+ L  K   ++ A+I  Y   G A+ A+K F +M+  G   ++ T    L
Sbjct: 396 GSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVL 455

Query: 362 NGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
             C+    +  G R L  +    G   ++     ++ M  + G +D A  V
Sbjct: 456 TACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRV 506



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 163/365 (44%), Gaps = 4/365 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A+RVF  +    V SWNAL+ G+A+S D +  +     MK        F++ ++L  
Sbjct: 196 LSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSA 255

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    ++ G+ VH   IR     D F+  S++ +Y  CG       +F  ++D  +V+W
Sbjct: 256 CSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSW 315

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +IT   Q G    A  +F  M    ++     +  +  A +     R G   HA   K
Sbjct: 316 NTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALK 375

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +  E D  +  +L+ MY +NG ++  S+VF  +  + + SWNA+   +  +    + +++
Sbjct: 376 HLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKL 435

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFG-KQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           F +M   G  P+  TF+ +L AC+    +  G + L        L  N      ++DM  
Sbjct: 436 FEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLG 495

Query: 300 KSGCLEDA--GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFT 356
           ++G L+ A   VA +     D+  + ++++S       EM  K   K+  LE  K   + 
Sbjct: 496 RAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYV 555

Query: 357 LASCL 361
           L S L
Sbjct: 556 LLSNL 560


>gi|413918945|gb|AFW58877.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 768

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 193/602 (32%), Positives = 321/602 (53%), Gaps = 5/602 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF  M + N VSW A++  +A++      M LF SM  +     +F+L + ++  A 
Sbjct: 99  ARMVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSMLRLGTAPDEFALGSAVRACAE 158

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G +  G+ VHA AI+        +  +LV MYSK G   +   +F RI+D D+ +WG+I
Sbjct: 159 LGDLGLGRQVHAQAIKSDNGGHLIVQNALVTMYSKSGSVGDGFALFERIRDKDLFSWGSI 218

Query: 124 ITCLDQQGCCQEAAKIFN-LMRESSVKPNQFVLTSLVRA-TTETGDQRCGESIHAVICKY 181
           I  L QQG   +A  IF  ++ E    PN+F   S+ RA +        GE IH +  KY
Sbjct: 219 IAGLAQQGREMDALHIFREMIAEGMHHPNEFHFGSVFRACSVVINSLEYGEQIHGLCVKY 278

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
             + ++  G +L  MY    ++    +VF  I   D VSWN+L + F       + + +F
Sbjct: 279 KLDRNSYAGCSLGDMYARCNKLDSAMKVFYRIESPDLVSWNSLINAFSADGLLSEAMVLF 338

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M     KP+  T + +L AC     +  G+ +H++ +K  L G+ +V  SL+ MY + 
Sbjct: 339 SEMRYSSLKPDGITVMALLCACVGCDALRQGRSIHSYLVKLGLGGDVMVCNSLISMYTRC 398

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
                A   F    ++D+  + +I+T+  Q    E   K FR +       +  +L + L
Sbjct: 399 LDFPSAMDVFHETNDRDVVTWNSILTACVQHRHMEDVFKLFRLLHSSMPSLDRISLNNVL 458

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK--GSALRD 419
           +  + +      + +H+ A K G + D  +S AL+  YAKCGS+DDA  +F+  G+  RD
Sbjct: 459 SASAELGYFEMAKQVHAYAFKVGLVSDAILSNALIDTYAKCGSLDDANKLFEIMGTG-RD 517

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SW+ +I GY + G  ++AL+ F  M + G  P+ +TFV VL ACS +GL++EG  ++S
Sbjct: 518 VFSWSSLIVGYAQFGYAKEALDLFARMRNLGVKPNHVTFVGVLIACSRVGLVDEGCYYYS 577

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
            ++  YGI PT +H +C+ID+L RAG+ +E   F+ +    P+ ++W  LL A   H ++
Sbjct: 578 IMEPEYGIVPTKEHCSCVIDLLARAGRLSEAAKFVDQMPFEPDIIMWNTLLAASRTHNDV 637

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           E+ ++ AE +L ++P   + YV   +I A+ G WN+F+ ++  + S G++K P  SWI++
Sbjct: 638 EMGKRAAEGVLNIDPSHSAAYVLLCNIYASSGNWNEFARLKKDMRSSGVQKSPGKSWIKL 697

Query: 600 DG 601
            G
Sbjct: 698 KG 699



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 140/487 (28%), Positives = 230/487 (47%), Gaps = 10/487 (2%)

Query: 83  ALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNL 142
           A +  LS  L+ MY +C   D+A  VF  + D + V+W A+I    Q   C +A  +F+ 
Sbjct: 77  ARNTILSNHLITMYGRCAAPDSARMVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSS 136

Query: 143 MRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGR 202
           M      P++F L S VRA  E GD   G  +HA   K       +V NALV+MY ++G 
Sbjct: 137 MLRLGTAPDEFALGSAVRACAELGDLGLGRQVHAQAIKSDNGGHLIVQNALVTMYSKSGS 196

Query: 203 VSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF-KPNMCTFIVILK 261
           V  G  +FE I  +D  SW ++ +           L IF +M+ +G   PN   F  + +
Sbjct: 197 VGDGFALFERIRDKDLFSWGSIIAGLAQQGREMDALHIFREMIAEGMHHPNEFHFGSVFR 256

Query: 262 ACS-SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLF 320
           ACS  ++ + +G+Q+H   +K+ LD N   G SL DMY +   L+ A   F  + + DL 
Sbjct: 257 ACSVVINSLEYGEQIHGLCVKYKLDRNSYAGCSLGDMYARCNKLDSAMKVFYRIESPDLV 316

Query: 321 AYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIA 380
           ++ ++I +++  G    A+  F +MR   +K +  T+ + L  C     L  GR +HS  
Sbjct: 317 SWNSLINAFSADGLLSEAMVLFSEMRYSSLKPDGITVMALLCACVGCDALRQGRSIHSYL 376

Query: 381 VKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKAL 440
           VK G   D+ V  +L++MY +C     A  VF  +  RD  +WN ++   V+H   E   
Sbjct: 377 VKLGLGGDVMVCNSLISMYTRCLDFPSAMDVFHETNDRDVVTWNSILTACVQHRHMEDVF 436

Query: 441 EAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDI 500
           + FR++       D I+   VLSA + +G  E  K+  +   K+  ++  I   A +ID 
Sbjct: 437 KLFRLLHSSMPSLDRISLNNVLSASAELGYFEMAKQVHAYAFKVGLVSDAILSNA-LIDT 495

Query: 501 LGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNY 560
             + G   +            +   W +L+   +  G        A++ L+L  +M +  
Sbjct: 496 YAKCGSLDDANKLFEIMGTGRDVFSWSSLIVGYAQFGY-------AKEALDLFARMRNLG 548

Query: 561 VFPSDIS 567
           V P+ ++
Sbjct: 549 VKPNHVT 555



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 169/344 (49%), Gaps = 11/344 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A +VF  +   ++VSWN+L+N ++  G   + M LF  M+    K    ++  +L  
Sbjct: 300 LDSAMKVFYRIESPDLVSWNSLINAFSADGLLSEAMVLFSEMRYSSLKPDGITVMALLCA 359

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 ++ G+ +H+  ++LG   D  +  SL+ MY++C    +A+ VF+   D DVV W
Sbjct: 360 CVGCDALRQGRSIHSYLVKLGLGGDVMVCNSLISMYTRCLDFPSAMDVFHETNDRDVVTW 419

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +I+T   Q    ++  K+F L+  S    ++  L +++ A+ E G     + +HA   K
Sbjct: 420 NSILTACVQHRHMEDVFKLFRLLHSSMPSLDRISLNNVLSASAELGYFEMAKQVHAYAFK 479

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH-QDSVSWNALFSRFQDYESPDQGLR 239
            G  SD ++ NAL+  Y + G +   +++FE +   +D  SW++L   +  +    + L 
Sbjct: 480 VGLVSDAILSNALIDTYAKCGSLDDANKLFEIMGTGRDVFSWSSLIVGYAQFGYAKEALD 539

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS-----L 294
           +F +M   G KPN  TF+ +L ACS +  V  G   + ++I     G  +V T      +
Sbjct: 540 LFARMRNLGVKPNHVTFVGVLIACSRVGLVDEG--CYYYSIMEPEYG--IVPTKEHCSCV 595

Query: 295 VDMYDKSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEM 337
           +D+  ++G L +A    D +    D+  +  ++ +     + EM
Sbjct: 596 IDLLARAGRLSEAAKFVDQMPFEPDIIMWNTLLAASRTHNDVEM 639



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 136/289 (47%), Gaps = 21/289 (7%)

Query: 262 ACSSLSDVGFGKQLHAHTIKHS-----LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
           ACS L     G+ +H H +  S     L  N ++   L+ MY +    + A + FD + +
Sbjct: 49  ACSRLRSFPQGRLVHRHLLASSAGAAYLARNTILSNHLITMYGRCAAPDSARMVFDGMLD 108

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL 376
           ++  ++ A+I ++AQ      A+  F  M   G   +EF L S +  C+ +  L  GR +
Sbjct: 109 RNPVSWAAVIAAHAQNSRCADAMGLFSSMLRLGTAPDEFALGSAVRACAELGDLGLGRQV 168

Query: 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
           H+ A+K+ +   + V  ALV MY+K GS+ D  A+F+    +D  SW  +I G  + G  
Sbjct: 169 HAQAIKSDNGGHLIVQNALVTMYSKSGSVGDGFALFERIRDKDLFSWGSIIAGLAQQGRE 228

Query: 437 EKALEAFRMMLDEG-YVPDEITFVVVLSACS-HMGLIEEGKKHFSSIKKIYGITPTIK-- 492
             AL  FR M+ EG + P+E  F  V  ACS  +  +E G       ++I+G+    K  
Sbjct: 229 MDALHIFREMIAEGMHHPNEFHFGSVFRACSVVINSLEYG-------EQIHGLCVKYKLD 281

Query: 493 ---HFACMI-DILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
              +  C + D+  R  K           + +P+ + W +L+ A S  G
Sbjct: 282 RNSYAGCSLGDMYARCNKLDSAMKVFYRIE-SPDLVSWNSLINAFSADG 329



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 10/174 (5%)

Query: 323 TAIITSYAQAGEAEMALKCFRKMRLEGIKSNE----FTLASCLNGCSPVATLANGRLLHS 378
           +  I  +  +G    AL+ F  +      + +       A+ +  CS + +   GRL+H 
Sbjct: 5   SGTILQFYHSGRLSAALRAFESLPFSPASAPDPLSAAAYAALVAACSRLRSFPQGRLVHR 64

Query: 379 --IAVKTGHLL---DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKH 433
             +A   G      +  +S  L+ MY +C + D A  VF G   R+  SW  +I  + ++
Sbjct: 65  HLLASSAGAAYLARNTILSNHLITMYGRCAAPDSARMVFDGMLDRNPVSWAAVIAAHAQN 124

Query: 434 GLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYG 486
                A+  F  ML  G  PDE      + AC+ +G +  G++ H  +IK   G
Sbjct: 125 SRCADAMGLFSSMLRLGTAPDEFALGSAVRACAELGDLGLGRQVHAQAIKSDNG 178


>gi|357457477|ref|XP_003599019.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488067|gb|AES69270.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 944

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 192/595 (32%), Positives = 313/595 (52%), Gaps = 1/595 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+RVF  M   + VSW  ++ GY ++G   + + L   M+    K +K ++   L   A 
Sbjct: 252 AQRVFDRMGVRDDVSWATMMAGYVKNGCYFEGLQLLHKMRRGNVKMNKVAVVNALLVVAE 311

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ G+ ++  A+++G   D  ++  +V MY+KCG    A ++F  ++  D+VAW A 
Sbjct: 312 MRDLEKGKEIYNYALQMGLMSDIVVATPIVCMYAKCGELKKARELFLSLEGRDLVAWSAF 371

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           ++ L + G  +E   IF +M+   +KP++ +L+ LV   TE  +   G+ +H    K   
Sbjct: 372 LSALVETGYPREVLSIFQVMQYEGLKPDKAILSILVSGCTEISNIGLGKIMHCYAIKADM 431

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           ESD  +   LVSMY+     +Y   +F  +  +D V WN L + F  Y  P   L +F +
Sbjct: 432 ESDISMVTTLVSMYIRFELFTYAMTLFNRMQIKDIVVWNTLINGFTKYGDPHLALEMFNR 491

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           + L G  P+  T + +  AC+ + D+  G  LH    K   + +  V  +L+DMY K G 
Sbjct: 492 LQLSGILPDSGTMVGLFSACAIMDDLDLGTCLHGGIEKSGFESDIHVKVALMDMYAKCGS 551

Query: 304 LEDAGVAFDSLAN-KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
           L      F    + KD  ++  +I  Y   G +  A+  FR+M+LE ++ N  T  + L 
Sbjct: 552 LCSVERLFLLTKHVKDEVSWNVMIAGYLHNGYSNEAISTFRRMKLENVRPNLVTFVTILP 611

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
             S ++ L      H+  ++ G L    +  +L+ MYAKCG +  +E  F     +DT S
Sbjct: 612 AVSYLSILREAMAFHTCIIRMGFLSCTLIGNSLIDMYAKCGQLRYSEKCFHEMENKDTIS 671

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN M+  Y  HG GE A+  F +M +     D ++++ VLSAC H GLI+EG   F+S+ 
Sbjct: 672 WNAMLSAYAMHGQGELAVALFSVMQESNVRVDSVSYISVLSACRHSGLIQEGWDIFASMC 731

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           + + + P+++H+ACM+D+LG AG F E+ + + +    P+A VW  LL AC  H N+ L 
Sbjct: 732 EKHHVEPSMEHYACMVDLLGCAGLFDEVLSLLNKMTTEPDARVWGALLAACKIHSNVTLG 791

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           E     LL+LEP+   ++V  SDI A  GRWND    R+ +++ G+KK P  SW+
Sbjct: 792 EVAVHHLLKLEPRNPVHHVVLSDIYAQCGRWNDARRTRSHINNHGLKKIPGYSWV 846



 Score =  248 bits (632), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 150/539 (27%), Positives = 275/539 (51%), Gaps = 5/539 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF  MP  + V WNA+++G ++S +  + + +F  M+    +  K S+  +    + 
Sbjct: 153 ARNVFDKMPVKDGVCWNAMISGLSQSLNPCEALEMFWRMQMEGFEVDKVSILNLAPAVSR 212

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G +   + +H   +R   ++   +S SL+DMY KCG   +A +VF R+   D V+W  +
Sbjct: 213 LGDVGCCKSIHGYVVRR--SICGVVSNSLIDMYCKCGDVHSAQRVFDRMGVRDDVSWATM 270

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    + GC  E  ++ + MR  +VK N+  + + +    E  D   G+ I+    + G 
Sbjct: 271 MAGYVKNGCYFEGLQLLHKMRRGNVKMNKVAVVNALLVVAEMRDLEKGKEIYNYALQMGL 330

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            SD +V   +V MY + G +     +F ++  +D V+W+A  S   +   P + L IF  
Sbjct: 331 MSDIVVATPIVCMYAKCGELKKARELFLSLEGRDLVAWSAFLSALVETGYPREVLSIFQV 390

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +G KP+     +++  C+ +S++G GK +H + IK  ++ +  + T+LV MY +   
Sbjct: 391 MQYEGLKPDKAILSILVSGCTEISNIGLGKIMHCYAIKADMESDISMVTTLVSMYIRFEL 450

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
              A   F+ +  KD+  +  +I  + + G+  +AL+ F +++L GI  +  T+    + 
Sbjct: 451 FTYAMTLFNRMQIKDIVVWNTLINGFTKYGDPHLALEMFNRLQLSGILPDSGTMVGLFSA 510

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA-LRDTAS 422
           C+ +  L  G  LH    K+G   D+ V  AL+ MYAKCGS+   E +F  +  ++D  S
Sbjct: 511 CAIMDDLDLGTCLHGGIEKSGFESDIHVKVALMDMYAKCGSLCSVERLFLLTKHVKDEVS 570

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN+MI GY+ +G   +A+  FR M  E   P+ +TFV +L A S++ ++ E     + I 
Sbjct: 571 WNVMIAGYLHNGYSNEAISTFRRMKLENVRPNLVTFVTILPAVSYLSILREAMAFHTCII 630

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
           ++  ++ T+   + +ID+  + G+    E    E +   + + W  +L A + HG  EL
Sbjct: 631 RMGFLSCTLIGNS-LIDMYAKCGQLRYSEKCFHEME-NKDTISWNAMLSAYAMHGQGEL 687



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 138/525 (26%), Positives = 257/525 (48%), Gaps = 3/525 (0%)

Query: 8   FKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYI 67
           F  +   +++ +N+ +  Y++     K ++L+ ++  +  K  KF+ + VLK   ++   
Sbjct: 56  FLQIKNPSLILYNSFIKAYSKFHHFHKAINLYHTILKIGLKPDKFTFNFVLKACTSALDF 115

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127
             G  ++   +  G   D ++  SL+DM+ K G  DNA  VF ++   D V W A+I+ L
Sbjct: 116 HEGVNIYKDIVFNGLECDVYIGTSLIDMFCKMGCLDNARNVFDKMPVKDGVCWNAMISGL 175

Query: 128 DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDT 187
            Q     EA ++F  M+    + ++  + +L  A +  GD  C +SIH  + +       
Sbjct: 176 SQSLNPCEALEMFWRMQMEGFEVDKVSILNLAPAVSRLGDVGCCKSIHGYVVRRSICG-- 233

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK 247
           +V N+L+ MY + G V    RVF+ +  +D VSW  + + +       +GL++ ++M   
Sbjct: 234 VVSNSLIDMYCKCGDVHSAQRVFDRMGVRDDVSWATMMAGYVKNGCYFEGLQLLHKMRRG 293

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
             K N    +  L   + + D+  GK+++ + ++  L  + VV T +V MY K G L+ A
Sbjct: 294 NVKMNKVAVVNALLVVAEMRDLEKGKEIYNYALQMGLMSDIVVATPIVCMYAKCGELKKA 353

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367
              F SL  +DL A++A +++  + G     L  F+ M+ EG+K ++  L+  ++GC+ +
Sbjct: 354 RELFLSLEGRDLVAWSAFLSALVETGYPREVLSIFQVMQYEGLKPDKAILSILVSGCTEI 413

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
           + +  G+++H  A+K     D+ + T LV+MY +      A  +F    ++D   WN +I
Sbjct: 414 SNIGLGKIMHCYAIKADMESDISMVTTLVSMYIRFELFTYAMTLFNRMQIKDIVVWNTLI 473

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGI 487
            G+ K+G    ALE F  +   G +PD  T V + SAC+ M  ++ G      I+K  G 
Sbjct: 474 NGFTKYGDPHLALEMFNRLQLSGILPDSGTMVGLFSACAIMDDLDLGTCLHGGIEK-SGF 532

Query: 488 TPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
              I     ++D+  + G    +E     TK   + + W  ++  
Sbjct: 533 ESDIHVKVALMDMYAKCGSLCSVERLFLLTKHVKDEVSWNVMIAG 577



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/456 (25%), Positives = 223/456 (48%), Gaps = 13/456 (2%)

Query: 109 FYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ 168
           F +IK+P ++ + + I    +     +A  +++ + +  +KP++F    +++A T   D 
Sbjct: 56  FLQIKNPSLILYNSFIKAYSKFHHFHKAINLYHTILKIGLKPDKFTFNFVLKACTSALDF 115

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228
             G +I+  I   G E D  +G +L+ M+ + G +     VF+ +  +D V WNA+ S  
Sbjct: 116 HEGVNIYKDIVFNGLECDVYIGTSLIDMFCKMGCLDNARNVFDKMPVKDGVCWNAMISGL 175

Query: 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH 288
               +P + L +F++M ++GF+ +  + + +  A S L DVG  K +H + ++ S+ G  
Sbjct: 176 SQSLNPCEALEMFWRMQMEGFEVDKVSILNLAPAVSRLGDVGCCKSIHGYVVRRSICG-- 233

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
           VV  SL+DMY K G +  A   FD +  +D  ++  ++  Y + G     L+   KMR  
Sbjct: 234 VVSNSLIDMYCKCGDVHSAQRVFDRMGVRDDVSWATMMAGYVKNGCYFEGLQLLHKMRRG 293

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
            +K N+  + + L   + +  L  G+ +++ A++ G + D+ V+T +V MYAKCG +  A
Sbjct: 294 NVKMNKVAVVNALLVVAEMRDLEKGKEIYNYALQMGLMSDIVVATPIVCMYAKCGELKKA 353

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
             +F     RD  +W+  +   V+ G   + L  F++M  EG  PD+    +++S C+ +
Sbjct: 354 RELFLSLEGRDLVAWSAFLSALVETGYPREVLSIFQVMQYEGLKPDKAILSILVSGCTEI 413

Query: 469 GLIEEGK-KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWE 527
             I  GK  H  +IK    +   I     ++ +  R   FT         ++  + +VW 
Sbjct: 414 SNIGLGKIMHCYAIKA--DMESDISMVTTLVSMYIRFELFTYAMTLFNRMQI-KDIVVWN 470

Query: 528 NLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFP 563
            L+   + +G       D    LE+  +++ + + P
Sbjct: 471 TLINGFTKYG-------DPHLALEMFNRLQLSGILP 499



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 72/164 (43%), Gaps = 3/164 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  +++ F  M   + +SWNA+L+ YA  G G+  + LF  M++   +    S  +VL  
Sbjct: 654 LRYSEKCFHEMENKDTISWNAMLSAYAMHGQGELAVALFSVMQESNVRVDSVSYISVLSA 713

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI-KDPDVV 118
             +SG I+ G  +  +M  +            +VD+    GL D  L +  ++  +PD  
Sbjct: 714 CRHSGLIQEGWDIFASMCEKHHVEPSMEHYACMVDLLGCAGLFDEVLSLLNKMTTEPDAR 773

Query: 119 AWGAII-TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRA 161
            WGA++  C            + +L++     P   V+ S + A
Sbjct: 774 VWGALLAACKIHSNVTLGEVAVHHLLKLEPRNPVHHVVLSDIYA 817


>gi|242091211|ref|XP_002441438.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
 gi|241946723|gb|EES19868.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
          Length = 771

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 189/592 (31%), Positives = 312/592 (52%), Gaps = 2/592 (0%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           VF  MP  ++VSWN+L++    +G  +        M       +  SL +V+        
Sbjct: 169 VFDEMPARDIVSWNSLVSALLTNGMLEDAKRAVVGMMRSGIPVNVASLVSVVPACGTERD 228

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
              G  VH + ++ G      L  +LVDMY K G  +++++VF  +++ + V+W + + C
Sbjct: 229 EGFGLSVHGLVLKSGLDSVVNLGNALVDMYGKFGDLESSMRVFNGMQEKNEVSWNSALGC 288

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
               G  ++  ++F +M E  V P    L+SL+ A  + G    G+ +H    +   ESD
Sbjct: 289 FAHAGFHEDVLEMFRVMSEHEVTPGSVTLSSLLPALVDLGYFHLGKEVHGYSIRRAMESD 348

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             + N+L+ MY + G +   S +FE I  ++ VSWNA+ +      +  +   +  +M  
Sbjct: 349 IFIANSLMDMYAKFGCLEKASAIFENIEGRNVVSWNAMIANLAQNGAETEAFSLVIEMQK 408

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
            G  PN  T + +L ACS ++ V  GKQ+HA +I  SL  +  V  +L+D+Y K G L  
Sbjct: 409 NGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIHRSLMSDLFVSNALIDVYAKCGQLSV 468

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A   FD  + KD  +Y  +I  Y+Q+     +L  F++MR  GI+ +  +   CL+ C+ 
Sbjct: 469 AQDIFDR-SEKDDVSYNTLIVGYSQSQCCFESLHLFQQMRSAGIEYDAVSFMGCLSACAN 527

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           ++    G+ +H + V+       F++ +L+ +Y K G +  A  +F     +D ASWN M
Sbjct: 528 LSAFKQGKEIHGVLVRRLLNTHPFLANSLLDLYTKGGMLATASKIFNRITRKDVASWNTM 587

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           I GY  HG  + A E F +M D+G   D ++++ VLSACSH GL++ GKK+FS +     
Sbjct: 588 ILGYGMHGQIDVAFELFDLMKDDGVDYDHVSYIAVLSACSHGGLVDRGKKYFSQMIA-QN 646

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDA 546
           I P   H+ACM+D+LGRAG+ +E    IT      N+ VW  LLG+C  HG+IEL    A
Sbjct: 647 IKPQQMHYACMVDLLGRAGQLSESVEIITNMPFPANSDVWGALLGSCRIHGDIELARLAA 706

Query: 547 EKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           E L EL+P+    Y    ++ +  G WN+ + ++ L+ S+ ++K P+ SW++
Sbjct: 707 EHLFELKPEHSGYYTLLRNMYSESGMWNEANEIKTLMKSRKVQKNPAYSWVQ 758



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 140/477 (29%), Positives = 244/477 (51%), Gaps = 12/477 (2%)

Query: 70  GQVVHAMAIRLGCAL-DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLD 128
           G  +HA A+R G  L D F   +LV  Y+  G A +A +VF  +   D+V+W ++++ L 
Sbjct: 130 GAELHAAALRRGLLLADVFAGNTLVTFYAARGRAADARRVFDEMPARDIVSWNSLVSALL 189

Query: 129 QQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTL 188
             G  ++A +    M  S +  N   L S+V A     D+  G S+H ++ K G +S   
Sbjct: 190 TNGMLEDAKRAVVGMMRSGIPVNVASLVSVVPACGTERDEGFGLSVHGLVLKSGLDSVVN 249

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG 248
           +GNALV MY + G +    RVF  +  ++ VSWN+    F      +  L +F  M    
Sbjct: 250 LGNALVDMYGKFGDLESSMRVFNGMQEKNEVSWNSALGCFAHAGFHEDVLEMFRVMSEHE 309

Query: 249 FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
             P   T   +L A   L     GK++H ++I+ +++ +  +  SL+DMY K GCLE A 
Sbjct: 310 VTPGSVTLSSLLPALVDLGYFHLGKEVHGYSIRRAMESDIFIANSLMDMYAKFGCLEKAS 369

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
             F+++  +++ ++ A+I + AQ G    A     +M+  G   N FTL + L  CS VA
Sbjct: 370 AIFENIEGRNVVSWNAMIANLAQNGAETEAFSLVIEMQKNGECPNSFTLVNLLPACSRVA 429

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
           ++  G+ +H+ ++    + D+FVS AL+ +YAKCG +  A+ +F  S  +D  S+N +I 
Sbjct: 430 SVKMGKQIHAWSIHRSLMSDLFVSNALIDVYAKCGQLSVAQDIFDRSE-KDDVSYNTLIV 488

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGI 487
           GY +     ++L  F+ M   G   D ++F+  LSAC+++   ++GK+ H   ++++   
Sbjct: 489 GYSQSQCCFESLHLFQQMRSAGIEYDAVSFMGCLSACANLSAFKQGKEIHGVLVRRLLNT 548

Query: 488 TPTIKHFACMIDILGRAGKF---TEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
            P + +   ++D+  + G     ++I N IT   +      W  ++     HG I++
Sbjct: 549 HPFLAN--SLLDLYTKGGMLATASKIFNRITRKDVAS----WNTMILGYGMHGQIDV 599



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 120/435 (27%), Positives = 214/435 (49%), Gaps = 2/435 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E + RVF  M E N VSWN+ L  +A +G  + V+ +F  M + E      +LS++L  
Sbjct: 264 LESSMRVFNGMQEKNEVSWNSALGCFAHAGFHEDVLEMFRVMSEHEVTPGSVTLSSLLPA 323

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             + GY   G+ VH  +IR     D F++ SL+DMY+K G  + A  +F  I+  +VV+W
Sbjct: 324 LVDLGYFHLGKEVHGYSIRRAMESDIFIANSLMDMYAKFGCLEKASAIFENIEGRNVVSW 383

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I  L Q G   EA  +   M+++   PN F L +L+ A +     + G+ IHA    
Sbjct: 384 NAMIANLAQNGAETEAFSLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIH 443

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
               SD  V NAL+ +Y + G++S    +F+  + +D VS+N L   +   +   + L +
Sbjct: 444 RSLMSDLFVSNALIDVYAKCGQLSVAQDIFDR-SEKDDVSYNTLIVGYSQSQCCFESLHL 502

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QM   G + +  +F+  L AC++LS    GK++H   ++  L+ +  +  SL+D+Y K
Sbjct: 503 FQQMRSAGIEYDAVSFMGCLSACANLSAFKQGKEIHGVLVRRLLNTHPFLANSLLDLYTK 562

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L  A   F+ +  KD+ ++  +I  Y   G+ ++A + F  M+ +G+  +  +  + 
Sbjct: 563 GGMLATASKIFNRITRKDVASWNTMILGYGMHGQIDVAFELFDLMKDDGVDYDHVSYIAV 622

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-D 419
           L+ CS    +  G+   S  +             +V +  + G + ++  +        +
Sbjct: 623 LSACSHGGLVDRGKKYFSQMIAQNIKPQQMHYACMVDLLGRAGQLSESVEIITNMPFPAN 682

Query: 420 TASWNMMIGGYVKHG 434
           +  W  ++G    HG
Sbjct: 683 SDVWGALLGSCRIHG 697


>gi|242076522|ref|XP_002448197.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
 gi|241939380|gb|EES12525.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
          Length = 766

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 192/602 (31%), Positives = 321/602 (53%), Gaps = 5/602 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF  M + N VSW A++  +A++      M LF SM        +F+L + +   + 
Sbjct: 101 ARVVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSMLRSGTMPDQFALGSAICACSE 160

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G +  G+ VHA AI+     D  +  +LV MYSK G   +   +F RI+D D+++WG+I
Sbjct: 161 LGDLGLGRQVHAQAIKWESGSDLIVQNALVTMYSKSGSVGDGFALFERIRDKDLISWGSI 220

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVK-PNQFVLTSLVRA-TTETGDQRCGESIHAVICKY 181
           I  L QQG   +A +IF  M    V  PN+F   S+ RA +        GE IH V  KY
Sbjct: 221 IAGLAQQGREMDALQIFREMIAEGVHHPNEFHFGSVFRACSVVVNSLEYGEQIHGVSVKY 280

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
             + ++  G +L  MY     +    +VF  I   D VSWN+L + F       + + +F
Sbjct: 281 QLDRNSYAGCSLSDMYARCNELDSARKVFYRIESPDLVSWNSLINAFSAKGLLSEAMVLF 340

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M   G +P+  T + +L AC     +  G+ +H++ +K  L G+ +V  SL+ MY + 
Sbjct: 341 SEMRDSGLRPDGITVMALLCACVGYDALHQGRSIHSYLVKLGLGGDVIVSNSLLSMYARC 400

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
                A   F    ++D+  + +I+T+  Q    E   K F  +       +  +L + L
Sbjct: 401 LDFSSAMDVFHETHDRDVVTWNSILTACVQHQHLEDVFKLFSLLHRSMPSLDRISLNNVL 460

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK--GSALRD 419
           +  + +      + +H+ A K G + D  +S  L+  YAKCGS+DDA  +F+  G+  RD
Sbjct: 461 SASAELGYFEMVKQVHAYAFKVGLVGDAMLSNGLIDTYAKCGSLDDANKLFEIMGTG-RD 519

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SW+ +I GY + G  ++AL+ F  M + G  P+ +TFV VL+ACS +GL++EG  ++S
Sbjct: 520 VFSWSSLIVGYAQFGYAKEALDLFARMRNLGVKPNHVTFVGVLTACSRVGLVDEGCYYYS 579

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
            +K  YGI PT +H +C++D+L RAG+ +E   F+ +    P+ ++W+ LL A   H ++
Sbjct: 580 IMKPEYGIVPTREHCSCVLDLLARAGRLSEAAKFVDQMPFEPDIIMWKTLLAASRTHNDV 639

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           ++ ++ AE +L ++P   + YV   +I A+ G WN+F+ ++  + S G++K P  SWI++
Sbjct: 640 DMGKRAAEGVLNIDPSHSAAYVLLCNIYASSGNWNEFARLKKDMRSSGVQKSPGKSWIKL 699

Query: 600 DG 601
            G
Sbjct: 700 KG 701



 Score =  214 bits (546), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 154/533 (28%), Positives = 254/533 (47%), Gaps = 25/533 (4%)

Query: 67  IKAGQVVHAMAIRLGCALDKFL------SCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           +  G++VH   +    A D+FL      S  L+ MY +CG  D+A  VF  + D + V+W
Sbjct: 58  LPQGRLVHRHLLA-SSARDRFLAHNTILSNHLITMYGRCGAPDSARVVFDGMLDRNPVSW 116

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    Q   C +A  +F+ M  S   P+QF L S + A +E GD   G  +HA   K
Sbjct: 117 AAVIAAHAQNSRCADAMGLFSSMLRSGTMPDQFALGSAICACSELGDLGLGRQVHAQAIK 176

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +   SD +V NALV+MY ++G V  G  +FE I  +D +SW ++ +           L+I
Sbjct: 177 WESGSDLIVQNALVTMYSKSGSVGDGFALFERIRDKDLISWGSIIAGLAQQGREMDALQI 236

Query: 241 FYQMLLKGF-KPNMCTFIVILKACS-SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           F +M+ +G   PN   F  + +ACS  ++ + +G+Q+H  ++K+ LD N   G SL DMY
Sbjct: 237 FREMIAEGVHHPNEFHFGSVFRACSVVVNSLEYGEQIHGVSVKYQLDRNSYAGCSLSDMY 296

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            +   L+ A   F  + + DL ++ ++I +++  G    A+  F +MR  G++ +  T+ 
Sbjct: 297 ARCNELDSARKVFYRIESPDLVSWNSLINAFSAKGLLSEAMVLFSEMRDSGLRPDGITVM 356

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           + L  C     L  GR +HS  VK G   D+ VS +L++MYA+C     A  VF  +  R
Sbjct: 357 ALLCACVGYDALHQGRSIHSYLVKLGLGGDVIVSNSLLSMYARCLDFSSAMDVFHETHDR 416

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D  +WN ++   V+H   E   + F ++       D I+   VLSA + +G  E  K+  
Sbjct: 417 DVVTWNSILTACVQHQHLEDVFKLFSLLHRSMPSLDRISLNNVLSASAELGYFEMVKQVH 476

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           +   K+ G+         +ID   + G   +            +   W +L+   +  G 
Sbjct: 477 AYAFKV-GLVGDAMLSNGLIDTYAKCGSLDDANKLFEIMGTGRDVFSWSSLIVGYAQFGY 535

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
                  A++ L+L  +M +  V P+ ++        F GV    S  G+  E
Sbjct: 536 -------AKEALDLFARMRNLGVKPNHVT--------FVGVLTACSRVGLVDE 573



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 141/273 (51%), Gaps = 1/273 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A++VF  +   ++VSWN+L+N ++  G   + M LF  M+D   +    ++  +L  
Sbjct: 302 LDSARKVFYRIESPDLVSWNSLINAFSAKGLLSEAMVLFSEMRDSGLRPDGITVMALLCA 361

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 +  G+ +H+  ++LG   D  +S SL+ MY++C    +A+ VF+   D DVV W
Sbjct: 362 CVGYDALHQGRSIHSYLVKLGLGGDVIVSNSLLSMYARCLDFSSAMDVFHETHDRDVVTW 421

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +I+T   Q    ++  K+F+L+  S    ++  L +++ A+ E G     + +HA   K
Sbjct: 422 NSILTACVQHQHLEDVFKLFSLLHRSMPSLDRISLNNVLSASAELGYFEMVKQVHAYAFK 481

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH-QDSVSWNALFSRFQDYESPDQGLR 239
            G   D ++ N L+  Y + G +   +++FE +   +D  SW++L   +  +    + L 
Sbjct: 482 VGLVGDAMLSNGLIDTYAKCGSLDDANKLFEIMGTGRDVFSWSSLIVGYAQFGYAKEALD 541

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFG 272
           +F +M   G KPN  TF+ +L ACS +  V  G
Sbjct: 542 LFARMRNLGVKPNHVTFVGVLTACSRVGLVDEG 574



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 137/284 (48%), Gaps = 11/284 (3%)

Query: 262 ACSSLSDVGFGKQLHAHTIKHS-----LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
           ACS L  +  G+ +H H +  S     L  N ++   L+ MY + G  + A V FD + +
Sbjct: 51  ACSRLRSLPQGRLVHRHLLASSARDRFLAHNTILSNHLITMYGRCGAPDSARVVFDGMLD 110

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL 376
           ++  ++ A+I ++AQ      A+  F  M   G   ++F L S +  CS +  L  GR +
Sbjct: 111 RNPVSWAAVIAAHAQNSRCADAMGLFSSMLRSGTMPDQFALGSAICACSELGDLGLGRQV 170

Query: 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
           H+ A+K     D+ V  ALV MY+K GS+ D  A+F+    +D  SW  +I G  + G  
Sbjct: 171 HAQAIKWESGSDLIVQNALVTMYSKSGSVGDGFALFERIRDKDLISWGSIIAGLAQQGRE 230

Query: 437 EKALEAFRMMLDEG-YVPDEITFVVVLSACS-HMGLIEEGKK-HFSSIKKIYGITPTIKH 493
             AL+ FR M+ EG + P+E  F  V  ACS  +  +E G++ H  S+K  Y +      
Sbjct: 231 MDALQIFREMIAEGVHHPNEFHFGSVFRACSVVVNSLEYGEQIHGVSVK--YQLDRNSYA 288

Query: 494 FACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
              + D+  R  +           + +P+ + W +L+ A S  G
Sbjct: 289 GCSLSDMYARCNELDSARKVFYRIE-SPDLVSWNSLINAFSAKG 331


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 204/615 (33%), Positives = 320/615 (52%), Gaps = 72/615 (11%)

Query: 52  FSLSTVLKGFANSGYI-KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFY 110
           F ++ ++  +A +G+I  A +V   M ++   + +  LS      Y+K G  + A +VF 
Sbjct: 49  FLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSG-----YAKGGRLEEAHRVFE 103

Query: 111 RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC 170
            + +PD V+W A+I   +Q G  + A  +F  M    V P QF LT+++ +         
Sbjct: 104 EMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGI 163

Query: 171 GESIHAVICKYGFESDTLVGNALVSMY-------------------------------ME 199
           G  +H+ + K+G  S   V N+L++MY                               M+
Sbjct: 164 GRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQ 223

Query: 200 NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL-KGFKPNMCTFIV 258
           +G V      FE +  +D VSWNA+ S +  +    + L IF +ML+    KP+  T   
Sbjct: 224 SGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLAS 283

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE------------- 305
            L AC++L ++  GKQ+HAH I+   D    VG +L+ MY KSG +E             
Sbjct: 284 ALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISN 343

Query: 306 --------------------DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM 345
                                A   FDSL  +D+ A+TA+I  Y Q G  + A++ FR M
Sbjct: 344 LDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSM 403

Query: 346 RLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSI 405
             EG K N +TLA+ L+  S +A+L +GR +H+ A ++G+   + VS AL+ MYAK GSI
Sbjct: 404 IKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSI 463

Query: 406 DDAEAVFKGSAL-RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
           +DA  VF      RDT +W  MI    +HGLGE+AL  F  ML+ G  PD IT+V VLSA
Sbjct: 464 NDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSA 523

Query: 465 CSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNAL 524
           C+H+GL+E+G+ +++ ++  + I PT  H+ACMID+ GRAG   E   FI    + P+ +
Sbjct: 524 CTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVI 583

Query: 525 VWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLS 584
            W +LL +C  H N+EL E  AE+LL +EP+    Y   +++ +  G+W + + +R  + 
Sbjct: 584 AWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSALANVYSACGQWENAANIRKSMK 643

Query: 585 SQGIKKEPSCSWIEV 599
            +G+KK+   SW+++
Sbjct: 644 DKGVKKDQGFSWVQI 658



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 137/518 (26%), Positives = 239/518 (46%), Gaps = 69/518 (13%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A RVF+ MPE + VSW A++ GY + G  +  + +F  M   +   ++F+L+ VL  
Sbjct: 95  LEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLAS 154

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK------- 113
            A    +  G+ VH+  ++ G +    ++ SL++MY+K G    A  VF R+K       
Sbjct: 155 CAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSW 214

Query: 114 ------------------------DPDVVAWGAIITCLDQQGCCQEAAKIFN-LMRESSV 148
                                   + DVV+W A+I+  +Q G  +EA  IF+ ++ +SS 
Sbjct: 215 NTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSS 274

Query: 149 KPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGS- 207
           KP++F L S + A     + + G+ IHA I +  F++   VGNAL+SMY ++G V     
Sbjct: 275 KPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQK 334

Query: 208 --------------------------------RVFEAIAHQDSVSWNALFSRFQDYESPD 235
                                           R+F+++  +D V+W A+   +       
Sbjct: 335 IIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQ 394

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
             + +F  M+ +G KPN  T   +L   SSL+ +  G+Q+HA   +     +  V  +L+
Sbjct: 395 DAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALI 454

Query: 296 DMYDKSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
            MY KSG + DA   F+ +   +D   +T++I + AQ G  E AL  F +M   GIK + 
Sbjct: 455 TMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDH 514

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA-LVAMYAKCGSIDDAEAVFK 413
            T    L+ C+ V  +  GR  +++      ++      A ++ ++ + G + +A A  +
Sbjct: 515 ITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIE 574

Query: 414 GSALR-DTASWNMMIGGYVKHGLGEKA-LEAFRMMLDE 449
              +  D  +W  ++     H   E A + A R++L E
Sbjct: 575 NMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIE 612



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 122/284 (42%), Gaps = 63/284 (22%)

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
           +   L+      D   GK +HA  IK  L     +  +L++ Y K+G + DA   FD + 
Sbjct: 16  YTSFLQRSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMP 75

Query: 316 NKDLF-------------------------------AYTAIITSYAQAGEAEMALKCFRK 344
            K +F                               ++TA+I  Y Q G+ E A+  FR+
Sbjct: 76  VKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFRE 135

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404
           M  + +   +FTL + L  C+ V  L  GR +HS  VK G    + V+ +L+ MYAK G 
Sbjct: 136 MVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGD 195

Query: 405 -------------------------------IDDAEAVFKGSALRDTASWNMMIGGYVKH 433
                                          +D A+  F+    RD  SWN MI GY +H
Sbjct: 196 PVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQH 255

Query: 434 GLGEKALEAF-RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
           G   +AL+ F +M++D    PD+ T    LSAC+++  ++ GK+
Sbjct: 256 GFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQ 299



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 92/210 (43%), Gaps = 33/210 (15%)

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
           G+ +H+  +K G  L +F+   L+  YAK G I DA  VF    ++   SWN+++ GY K
Sbjct: 32  GKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAK 91

Query: 433 HG-----------------------------LG--EKALEAFRMMLDEGYVPDEITFVVV 461
            G                             +G  E A+  FR M+ +   P + T   V
Sbjct: 92  GGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNV 151

Query: 462 LSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTP 521
           L++C+ +  +  G+K  S + K +G++  I     ++++  ++G     +      KL  
Sbjct: 152 LASCAAVECLGIGRKVHSFVVK-HGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKS 210

Query: 522 NALVWENLLGACSWHGNIELDEKDAEKLLE 551
            +  W  ++ +    G ++L +   E+++E
Sbjct: 211 TS-SWNTMISSHMQSGLVDLAQVQFEQMIE 239


>gi|357468777|ref|XP_003604673.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
 gi|355505728|gb|AES86870.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
          Length = 838

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 185/603 (30%), Positives = 313/603 (51%), Gaps = 7/603 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKD-----MEKKFSKFSLSTVL 58
           A ++F+  P   V  WNALL  Y   G+  + + LF  M +     +E++   +S+S  L
Sbjct: 190 AHKLFQETPHRTVYLWNALLRSYCFEGEWVETLSLFRQMNNVSSVSIEERPDNYSVSIAL 249

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
           K  A    +  G+V+H    ++    D F+  +L+D+Y+KCG  ++A+KVF     PDVV
Sbjct: 250 KSCAGLRKLLLGKVIHGFLKKVRIDGDMFVGSALIDLYTKCGQMNDAVKVFMEYPKPDVV 309

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESS-VKPNQFVLTSLVRATTETGDQRCGESIHAV 177
            W +II+  +Q G  + A   F+ M  S  V P+   L S+  A  +  + + G S+H  
Sbjct: 310 LWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSVASACAQLSNFKLGRSVHGF 369

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
           + + G ++   + N+L+ +Y + G +   S +F  ++ +D +SW+ + + + D  +    
Sbjct: 370 VKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFREMSDKDIISWSTMVACYADNGAETDV 429

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           L +F +ML K  KPN  T + +L+AC+ +S++  G ++H   + +  +    V T+L+DM
Sbjct: 430 LDLFNEMLDKRIKPNWVTVVSVLRACACISNLEEGMKIHELAVNYGFEMETTVSTALMDM 489

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K    E A   F+ +  KD+ A+  + + YA  G    ++  FR M   G + +   L
Sbjct: 490 YMKCFSPEKAVDLFNRMPKKDVIAWAVLFSGYADNGMVHESMWVFRNMLSSGTRPDAIAL 549

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
              L   S +  L     LH+  +K G   + F+  +L+ +YAKC SI+DA  VFKG   
Sbjct: 550 VKILTTISELGILQQAVCLHAFVIKNGFENNQFIGASLIEVYAKCSSIEDANKVFKGMTY 609

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV-PDEITFVVVLSACSHMGLIEEGKK 476
           +D  +W+ +I  Y  HG GE+AL+ F  M +     P+ +TF+ +LSACSH GLI+EG  
Sbjct: 610 KDVVTWSSIIAAYGFHGQGEEALKLFYQMANHSDTKPNNVTFISILSACSHSGLIKEGIN 669

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
            F  +   Y + P  +H+A M+D+LGR G+     + I    +     +W  LLGAC  H
Sbjct: 670 MFDIMVNKYKLKPNSEHYAIMVDLLGRMGELDMALDVINNMPMQAGPDIWGALLGACRIH 729

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSW 596
            NI++ E  A+ L  L+P     Y+  S+I +    W+  + +R L+  + + K    S 
Sbjct: 730 QNIKMGEVAAKNLFSLDPNHAGYYILLSNIYSVDENWHSATKLRRLVKEKRLNKIVGQSV 789

Query: 597 IEV 599
           +E+
Sbjct: 790 VEL 792



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/503 (25%), Positives = 240/503 (47%), Gaps = 10/503 (1%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           +H+  ++ G   D F+   L  +Y++     +A K+F       V  W A++     +G 
Sbjct: 158 LHSQCLKAGLVHDSFIVTKLNVLYARYASIHHAHKLFQETPHRTVYLWNALLRSYCFEGE 217

Query: 133 CQEAAKIFNLMRE-SSV----KPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDT 187
             E   +F  M   SSV    +P+ + ++  +++         G+ IH  + K   + D 
Sbjct: 218 WVETLSLFRQMNNVSSVSIEERPDNYSVSIALKSCAGLRKLLLGKVIHGFLKKVRIDGDM 277

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL- 246
            VG+AL+ +Y + G+++   +VF      D V W ++ S ++   SP+  L  F +M++ 
Sbjct: 278 FVGSALIDLYTKCGQMNDAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFSRMVVS 337

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           +   P+  T + +  AC+ LS+   G+ +H    +  LD    +  SL+ +Y K+G +++
Sbjct: 338 EKVSPDPVTLVSVASACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKN 397

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A   F  +++KD+ +++ ++  YA  G     L  F +M  + IK N  T+ S L  C+ 
Sbjct: 398 ASNLFREMSDKDIISWSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRACAC 457

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           ++ L  G  +H +AV  G  ++  VSTAL+ MY KC S + A  +F     +D  +W ++
Sbjct: 458 ISNLEEGMKIHELAVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKKDVIAWAVL 517

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK-KHFSSIKKIY 485
             GY  +G+  +++  FR ML  G  PD I  V +L+  S +G++++    H   IK  +
Sbjct: 518 FSGYADNGMVHESMWVFRNMLSSGTRPDAIALVKILTTISELGILQQAVCLHAFVIKNGF 577

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKD 545
                I   A +I++  +     E  N + +     + + W +++ A  +HG  E   K 
Sbjct: 578 ENNQFIG--ASLIEVYAKCSSI-EDANKVFKGMTYKDVVTWSSIIAAYGFHGQGEEALKL 634

Query: 546 AEKLLELEPKMESNYVFPSDISA 568
             ++        +N  F S +SA
Sbjct: 635 FYQMANHSDTKPNNVTFISILSA 657



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 125/436 (28%), Positives = 205/436 (47%), Gaps = 10/436 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLK 59
           M  A +VF   P+ +VV W ++++GY +SG  +  +  F  M   EK      +L +V  
Sbjct: 293 MNDAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSVAS 352

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             A     K G+ VH    R G      L+ SL+ +Y K G   NA  +F  + D D+++
Sbjct: 353 ACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFREMSDKDIIS 412

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  ++ C    G   +   +FN M +  +KPN   + S++RA     +   G  IH +  
Sbjct: 413 WSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRACACISNLEEGMKIHELAV 472

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
            YGFE +T V  AL+ MYM+         +F  +  +D ++W  LFS + D     + + 
Sbjct: 473 NYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKKDVIAWAVLFSGYADNGMVHESMW 532

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ---LHAHTIKHSLDGNHVVGTSLVD 296
           +F  ML  G +P+    I ++K  +++S++G  +Q   LHA  IK+  + N  +G SL++
Sbjct: 533 VFRNMLSSGTRPDA---IALVKILTTISELGILQQAVCLHAFVIKNGFENNQFIGASLIE 589

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEF 355
           +Y K   +EDA   F  +  KD+  +++II +Y   G+ E ALK F +M      K N  
Sbjct: 590 VYAKCSSIEDANKVFKGMTYKDVVTWSSIIAAYGFHGQGEEALKLFYQMANHSDTKPNNV 649

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA-LVAMYAKCGSIDDAEAVFKG 414
           T  S L+ CS    +  G  +  I V    L       A +V +  + G +D A  V   
Sbjct: 650 TFISILSACSHSGLIKEGINMFDIMVNKYKLKPNSEHYAIMVDLLGRMGELDMALDVINN 709

Query: 415 SALRDTAS-WNMMIGG 429
             ++     W  ++G 
Sbjct: 710 MPMQAGPDIWGALLGA 725



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 142/318 (44%), Gaps = 45/318 (14%)

Query: 263 CSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAY 322
           CS LS      QLH+  +K  L  +  + T L  +Y +   +  A   F    ++ ++ +
Sbjct: 150 CSKLSI----SQLHSQCLKAGLVHDSFIVTKLNVLYARYASIHHAHKLFQETPHRTVYLW 205

Query: 323 TAIITSYAQAGEAEMALKCFRKMR------LEGIKSNEFTLASCLNGCSPVATLANGRLL 376
            A++ SY   GE    L  FR+M       +E  + + ++++  L  C+ +  L  G+++
Sbjct: 206 NALLRSYCFEGEWVETLSLFRQMNNVSSVSIEE-RPDNYSVSIALKSCAGLRKLLLGKVI 264

Query: 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
           H    K     DMFV +AL+ +Y KCG ++DA  VF      D   W  +I GY + G  
Sbjct: 265 HGFLKKVRIDGDMFVGSALIDLYTKCGQMNDAVKVFMEYPKPDVVLWTSIISGYEQSGSP 324

Query: 437 EKALEAF-RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK------------ 483
           E AL  F RM++ E   PD +T V V SAC+ +   + G+     +K+            
Sbjct: 325 ELALAFFSRMVVSEKVSPDPVTLVSVASACAQLSNFKLGRSVHGFVKRKGLDNKLCLANS 384

Query: 484 ---IYGITPTIKH---------------FACMIDILGRAGKFTEIENFITE---TKLTPN 522
              +YG T +IK+               ++ M+      G  T++ +   E    ++ PN
Sbjct: 385 LLHLYGKTGSIKNASNLFREMSDKDIISWSTMVACYADNGAETDVLDLFNEMLDKRIKPN 444

Query: 523 ALVWENLLGACSWHGNIE 540
            +   ++L AC+   N+E
Sbjct: 445 WVTVVSVLRACACISNLE 462



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 137/302 (45%), Gaps = 6/302 (1%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E A  +F  MP+ +V++W  L +GYA++G   + M +F +M     +    +L  +L   
Sbjct: 497 EKAVDLFNRMPKKDVIAWAVLFSGYADNGMVHESMWVFRNMLSSGTRPDAIALVKILTTI 556

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           +  G ++    +HA  I+ G   ++F+  SL+++Y+KC   ++A KVF  +   DVV W 
Sbjct: 557 SELGILQQAVCLHAFVIKNGFENNQFIGASLIEVYAKCSSIEDANKVFKGMTYKDVVTWS 616

Query: 122 AIITCLDQQGCCQEAAKIFNLM-RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC- 179
           +II      G  +EA K+F  M   S  KPN     S++ A + +G  + G ++  ++  
Sbjct: 617 SIIAAYGFHGQGEEALKLFYQMANHSDTKPNNVTFISILSACSHSGLIKEGINMFDIMVN 676

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS-WNALFSRFQDYESPDQGL 238
           KY  + ++     +V +    G +     V   +  Q     W AL    + +++   G 
Sbjct: 677 KYKLKPNSEHYAIMVDLLGRMGELDMALDVINNMPMQAGPDIWGALLGACRIHQNIKMGE 736

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
                +      PN   + ++L    S+ D  +        +      N +VG S+V++ 
Sbjct: 737 VAAKNLF--SLDPNHAGYYILLSNIYSV-DENWHSATKLRRLVKEKRLNKIVGQSVVELK 793

Query: 299 DK 300
           ++
Sbjct: 794 NE 795


>gi|326487167|dbj|BAJ89568.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 691

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 197/598 (32%), Positives = 310/598 (51%), Gaps = 11/598 (1%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           +F  MP  NVV+W + ++G   +G  +    +F  M +     + F+ +  L   A +G 
Sbjct: 51  LFDRMPRKNVVAWTSAVSGLTRNGRPEAAGEMFADMVESGVALNDFACNAALAACAAAGP 110

Query: 67  I--KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
              + G+ VH++A+R G   D ++   LV++Y++CG    A  V  R++ PDVVA+ +++
Sbjct: 111 GALRTGEQVHSLAVRAGFVGDAWVGSCLVELYARCGSTRAAEAVLARMESPDVVAYTSLV 170

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK-YGF 183
           + L + G    AA+    M    V PN+  +TS++ A         G  IH  + K  GF
Sbjct: 171 SALCRSGEFGMAAEALGQMMGHGVMPNEHTVTSILAACCPL---VLGVQIHGYMIKAMGF 227

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
                  + LV  Y  NG       VF+ +  ++ V+W  +         P+  L++F +
Sbjct: 228 SQSVYTSSTLVDFYSRNGEFDMAKTVFDNLQCKNVVTWCTMMQLHIRDGRPEDALQLFDE 287

Query: 244 MLLKGF-KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           M+ +G   PN   F + L AC S   +  G QLH+  IKH L  +  V  +L+ MY + G
Sbjct: 288 MISEGVVSPNEFAFSIALGACES---IALGSQLHSLAIKHGLASHLRVSNALLSMYGRIG 344

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            ++     F  + + D+ ++TA I++Y Q G  E A+    +M  +G+  N++  +S L+
Sbjct: 345 LVQQLEAMFRGIEDPDIVSWTAAISAYFQNGHGEKAIALLSRMHSQGLTPNDYAFSSVLS 404

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+ +A L  GR  H +A+K G  +      AL+ MY+KCG I  A   F     RD  S
Sbjct: 405 SCADLALLDQGRQFHCLALKLGCDVKTCTGNALINMYSKCGQIVPARLAFDIMDHRDVTS 464

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF-SSI 481
           WN +I G+ +HG  +  L+AF  M   G  P+E T + VL+AC+H GL++EG   F S++
Sbjct: 465 WNSLIHGHAQHGEVDMVLKAFSEMCSNGGEPNESTLLGVLAACNHAGLVDEGVAFFRSAM 524

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
             +YG   T  H+ACM+D+LGR+G+F +    I E    P  LVW+ LL +C  HGN+E 
Sbjct: 525 AGLYGTFLTPPHYACMVDMLGRSGRFDDALCLIEEMPFEPGVLVWKTLLASCRLHGNLET 584

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
               AEKL+EL  +  ++YV  S I A  G W D   VR  +   G++KE   SW+EV
Sbjct: 585 GRLAAEKLVELSDQDSASYVLMSGIHAMHGEWRDADMVRRRMDEAGVRKEAGRSWVEV 642



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 133/460 (28%), Positives = 215/460 (46%), Gaps = 20/460 (4%)

Query: 90  CSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK 149
           C  +D   K G   +AL +F R+   +VVAW + ++ L + G  + A ++F  M ES V 
Sbjct: 33  CKRLDGLMKAGRVADALDLFDRMPRKNVVAWTSAVSGLTRNGRPEAAGEMFADMVESGVA 92

Query: 150 PNQF--VLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGS 207
            N F         A    G  R GE +H++  + GF  D  VG+ LV +Y   G      
Sbjct: 93  LNDFACNAALAACAAAGPGALRTGEQVHSLAVRAGFVGDAWVGSCLVELYARCGSTRAAE 152

Query: 208 RVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLS 267
            V   +   D V++ +L S                QM+  G  PN  T   IL AC  L 
Sbjct: 153 AVLARMESPDVVAYTSLVSALCRSGEFGMAAEALGQMMGHGVMPNEHTVTSILAACCPLV 212

Query: 268 DVGFGKQLHAHTIKHSLDGNHVVGTS--LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
               G Q+H + IK ++  +  V TS  LVD Y ++G  + A   FD+L  K++  +  +
Sbjct: 213 ---LGVQIHGYMIK-AMGFSQSVYTSSTLVDFYSRNGEFDMAKTVFDNLQCKNVVTWCTM 268

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKS-NEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           +  + + G  E AL+ F +M  EG+ S NEF  +  L  C  +A    G  LHS+A+K G
Sbjct: 269 MQLHIRDGRPEDALQLFDEMISEGVVSPNEFAFSIALGACESIAL---GSQLHSLAIKHG 325

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
               + VS AL++MY + G +   EA+F+G    D  SW   I  Y ++G GEKA+    
Sbjct: 326 LASHLRVSNALLSMYGRIGLVQQLEAMFRGIEDPDIVSWTAAISAYFQNGHGEKAIALLS 385

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA 504
            M  +G  P++  F  VLS+C+ + L+++G++ F  +    G          +I++  + 
Sbjct: 386 RMHSQGLTPNDYAFSSVLSSCADLALLDQGRQ-FHCLALKLGCDVKTCTGNALINMYSKC 444

Query: 505 GKFTEIE---NFITETKLTPNALVWENLLGACSWHGNIEL 541
           G+        + +    +T     W +L+   + HG +++
Sbjct: 445 GQIVPARLAFDIMDHRDVTS----WNSLIHGHAQHGEVDM 480



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 149/311 (47%), Gaps = 10/311 (3%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLKG 60
           ++AK VF ++   NVV+W  ++  +   G  +  + LF  M  +     ++F+ S  L  
Sbjct: 248 DMAKTVFDNLQCKNVVTWCTMMQLHIRDGRPEDALQLFDEMISEGVVSPNEFAFSIALGA 307

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +   I  G  +H++AI+ G A    +S +L+ MY + GL      +F  I+DPD+V+W
Sbjct: 308 CES---IALGSQLHSLAIKHGLASHLRVSNALLSMYGRIGLVQQLEAMFRGIEDPDIVSW 364

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A I+   Q G  ++A  + + M    + PN +  +S++ +  +      G   H +  K
Sbjct: 365 TAAISAYFQNGHGEKAIALLSRMHSQGLTPNDYAFSSVLSSCADLALLDQGRQFHCLALK 424

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G +  T  GNAL++MY + G++      F+ + H+D  SWN+L      +   D  L+ 
Sbjct: 425 LGCDVKTCTGNALINMYSKCGQIVPARLAFDIMDHRDVTSWNSLIHGHAQHGEVDMVLKA 484

Query: 241 FYQMLLKGFKPNMCTFIVILKAC--SSLSD--VGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
           F +M   G +PN  T + +L AC  + L D  V F +   A      L   H     +VD
Sbjct: 485 FSEMCSNGGEPNESTLLGVLAACNHAGLVDEGVAFFRSAMAGLYGTFLTPPHY--ACMVD 542

Query: 297 MYDKSGCLEDA 307
           M  +SG  +DA
Sbjct: 543 MLGRSGRFDDA 553



 Score = 46.6 bits (109), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 3/124 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+  F  M   +V SWN+L++G+A+ G+   V+  F  M     + ++ +L  VL    +
Sbjct: 450 ARLAFDIMDHRDVTSWNSLIHGHAQHGEVDMVLKAFSEMCSNGGEPNESTLLGVLAACNH 509

Query: 64  SGYIKAGQVV--HAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVVAW 120
           +G +  G      AMA   G  L       +VDM  + G  D+AL +   +  +P V+ W
Sbjct: 510 AGLVDEGVAFFRSAMAGLYGTFLTPPHYACMVDMLGRSGRFDDALCLIEEMPFEPGVLVW 569

Query: 121 GAII 124
             ++
Sbjct: 570 KTLL 573


>gi|50428671|gb|AAT77022.1| putative PPR repeat protein [Oryza sativa Japonica Group]
 gi|108712010|gb|ABF99805.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 725

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 195/610 (31%), Positives = 325/610 (53%), Gaps = 11/610 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A+ +F  MP  + VSWN L+ GY+  G  +  +  F   +       +F+ +  L  
Sbjct: 26  MRHARLLFDGMPRRDAVSWNTLIAGYSGLGSCRLALDAFRDARASGDGVDRFTFAAALAS 85

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A  G  + G+VVH +A+  G A   FL+ S++DMY+KCG+ D    +F R ++    +W
Sbjct: 86  CARVGDWRDGRVVHGLAVVSGLARTAFLTNSVIDMYAKCGMIDEVRLLFDRAEERGEASW 145

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD-QRCGESIHAVIC 179
             +++   + G  + A  +   M  S VK + F L  +++A +E GD +     +H+ + 
Sbjct: 146 NLLLSAYVRMGWPEVAVNVLVWMHRSGVKLDSFALGGILKACSELGDSEDVRRMLHSCVV 205

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNAL---FSRFQDYESPD- 235
           K G + D  VG+A+V MY +NG +    +VF+ I +Q+ V +NA+   F+R  +   P+ 
Sbjct: 206 KVGLDLDVFVGSAMVDMYAKNGGLEEAIKVFDCIPNQNVVVYNAMIAGFARLGNDPCPEI 265

Query: 236 --QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
             + + +F  ML K  KP+  TF  +L+ C+  + V  G+Q+HAH I   L G+  + + 
Sbjct: 266 RIEAVTLFSNMLKKRIKPSKFTFKSVLEVCNLTNAVRCGRQIHAHVILSGLQGDEFIASV 325

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           L+++Y K+ C+ D+   FD    +D+F +T++IT++ Q    E AL  FR++      ++
Sbjct: 326 LINLYSKARCVNDSLRCFDMTVKEDVFIWTSMITAFVQNEHFEKALYLFRELLYTRKGTD 385

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFV--STALVAMYAKCGSIDDAEAV 411
           +FT++S ++ C+ ++     + +H  AVKTG  LD F     + +AMY   G +  ++  
Sbjct: 386 QFTISSVMSACAALSVPTTCKQIHCHAVKTG--LDQFTVSGNSQIAMYRNIGDLKASKQT 443

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F+  +  DT SW+ MI  Y  HG   KALE F  M + G + +E   +  L ACSH GL 
Sbjct: 444 FEQISCLDTFSWSAMILSYAVHGYESKALELFEKMKNLGVMMNESASLAALIACSHQGLG 503

Query: 472 EEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLG 531
           +EG +++ +     G +  +K  ACM+D+LGR GK  + E+FI  +    + ++W  LL 
Sbjct: 504 DEGLRYYENTIPDDGFSLDVKLKACMVDLLGRVGKIADAEDFIMSSGSENDPILWHALLR 563

Query: 532 ACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
           AC  HG+ E   K  EKL+ELEP   S+YV   ++    G+ +     R L+  +GI  E
Sbjct: 564 ACRVHGDKERCTKIGEKLMELEPFSASSYVMLYNLYMDAGKISLAMRTRGLMRERGISNE 623

Query: 592 PSCSWIEVDG 601
              SW +  G
Sbjct: 624 AGISWTDFGG 633



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 113/404 (27%), Positives = 192/404 (47%), Gaps = 8/404 (1%)

Query: 87  FLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRES 146
           FL  +L+ +Y +CG   +A  +F  +   D V+W  +I      G C+ A   F   R S
Sbjct: 11  FLRNNLLALYCRCGDMRHARLLFDGMPRRDAVSWNTLIAGYSGLGSCRLALDAFRDARAS 70

Query: 147 SVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYG 206
               ++F   + + +    GD R G  +H +    G      + N+++ MY + G +   
Sbjct: 71  GDGVDRFTFAAALASCARVGDWRDGRVVHGLAVVSGLARTAFLTNSVIDMYAKCGMIDEV 130

Query: 207 SRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266
             +F+    +   SWN L S +     P+  + +   M   G K +      ILKACS L
Sbjct: 131 RLLFDRAEERGEASWNLLLSAYVRMGWPEVAVNVLVWMHRSGVKLDSFALGGILKACSEL 190

Query: 267 SDV-GFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
            D     + LH+  +K  LD +  VG+++VDMY K+G LE+A   FD + N+++  Y A+
Sbjct: 191 GDSEDVRRMLHSCVVKVGLDLDVFVGSAMVDMYAKNGGLEEAIKVFDCIPNQNVVVYNAM 250

Query: 326 ITSYAQAGEAEM------ALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSI 379
           I  +A+ G          A+  F  M  + IK ++FT  S L  C+    +  GR +H+ 
Sbjct: 251 IAGFARLGNDPCPEIRIEAVTLFSNMLKKRIKPSKFTFKSVLEVCNLTNAVRCGRQIHAH 310

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
            + +G   D F+++ L+ +Y+K   ++D+   F  +   D   W  MI  +V++   EKA
Sbjct: 311 VILSGLQGDEFIASVLINLYSKARCVNDSLRCFDMTVKEDVFIWTSMITAFVQNEHFEKA 370

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK 482
           L  FR +L      D+ T   V+SAC+ + +    K+ H  ++K
Sbjct: 371 LYLFRELLYTRKGTDQFTISSVMSACAALSVPTTCKQIHCHAVK 414



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 108/218 (49%)

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
            +L+ +Y + G +  A + FD +  +D  ++  +I  Y+  G   +AL  FR  R  G  
Sbjct: 14  NNLLALYCRCGDMRHARLLFDGMPRRDAVSWNTLIAGYSGLGSCRLALDAFRDARASGDG 73

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            + FT A+ L  C+ V    +GR++H +AV +G     F++ +++ MYAKCG ID+   +
Sbjct: 74  VDRFTFAAALASCARVGDWRDGRVVHGLAVVSGLARTAFLTNSVIDMYAKCGMIDEVRLL 133

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F  +  R  ASWN+++  YV+ G  E A+     M   G   D      +L ACS +G  
Sbjct: 134 FDRAEERGEASWNLLLSAYVRMGWPEVAVNVLVWMHRSGVKLDSFALGGILKACSELGDS 193

Query: 472 EEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTE 509
           E+ ++   S     G+   +   + M+D+  + G   E
Sbjct: 194 EDVRRMLHSCVVKVGLDLDVFVGSAMVDMYAKNGGLEE 231



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 2/144 (1%)

Query: 389 MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
           +F+   L+A+Y +CG +  A  +F G   RD  SWN +I GY   G    AL+AFR    
Sbjct: 10  LFLRNNLLALYCRCGDMRHARLLFDGMPRRDAVSWNTLIAGYSGLGSCRLALDAFRDARA 69

Query: 449 EGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFT 508
            G   D  TF   L++C+ +G   +G+     +  + G+  T      +ID+  + G   
Sbjct: 70  SGDGVDRFTFAAALASCARVGDWRDGRV-VHGLAVVSGLARTAFLTNSVIDMYAKCGMID 128

Query: 509 EIENFITETKLTPNALVWENLLGA 532
           E+       +    A  W  LL A
Sbjct: 129 EVRLLFDRAEERGEA-SWNLLLSA 151


>gi|302769798|ref|XP_002968318.1| hypothetical protein SELMODRAFT_599 [Selaginella moellendorffii]
 gi|300163962|gb|EFJ30572.1| hypothetical protein SELMODRAFT_599 [Selaginella moellendorffii]
          Length = 666

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 205/608 (33%), Positives = 315/608 (51%), Gaps = 40/608 (6%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMK-DMEKKFSKFSLSTVLK 59
           + LA+ VF  M   +V+SWNA++  YA++G  ++ M LF +M+ D   +    +   V+ 
Sbjct: 57  LALAREVFDGMDHRDVISWNAVITAYAQAGHCKEAMELFQAMQEDGRIEPDSVTFVAVVS 116

Query: 60  GFANSGYIKAGQVVHAMAIRLGCA-LDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
              +   ++AG  + A+    G    D  L  +LV+MYSKCG   +A  VF R+K  DVV
Sbjct: 117 ACCDPSALEAGDKIFALVEERGLLDSDVVLGNALVNMYSKCGSLKSATMVFERMKIRDVV 176

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLM-------RESSVKPNQFVLTSLVRATTETGDQRCG 171
           +W AII+ L +      A + F  M       +E ++ P+ F L S + A T       G
Sbjct: 177 SWNAIISALARHDRKDIAMQRFREMQLEGLSPKEEALLPDGFTLASALAACTGPEMLEEG 236

Query: 172 ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY 231
             IHA++ + G ES+ +VGNALVSMY   G +      F+ +A ++ VSWNA+ + +  +
Sbjct: 237 REIHALVIERGCESELVVGNALVSMYANCGTLQDALECFQKMAQRNVVSWNAMIAAYVHH 296

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
               +  RIF+QM L+G +PN  TF+  L ACS+ +    G QLH+   +  L+ +  VG
Sbjct: 297 NCDKEAFRIFHQMQLEGVQPNSVTFVTFLSACSTPAAFEDGLQLHSIVRESGLEADASVG 356

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG------------------ 333
            ++V M+ K   L+DA  AF  +  K+L ++  ++ +Y   G                  
Sbjct: 357 NAVVHMFAKCWSLDDALAAFQRIPQKNLGSWNGLLGAYIHVGRLAEARKLFEVMEERDVI 416

Query: 334 ----------EAEM---ALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIA 380
                     E EM   A++ FR+M  EG KSN  T  + L  C+  A LA GR +H + 
Sbjct: 417 TWNMILGAYVEREMAKEAVRLFRRMIAEGTKSNSITWTTMLGACAGEALLAEGRRIHELI 476

Query: 381 VKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKAL 440
            + G   ++FV  ALV M+ KC S+  A   F+    +D +SWN+++    ++G  E+AL
Sbjct: 477 GERGADSELFVGNALVDMFGKCASLGGARQAFERIRGKDASSWNVLVAALAQNGDAEEAL 536

Query: 441 EAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDI 500
           + F  M  EG  P ++TF+VV  ACSH G +E+ K  F+S++  YGI P   H++ M D+
Sbjct: 537 KQFLQMQREGIKPTDVTFIVVFWACSHAGRLEQAKTIFASLRHDYGIAPLPSHYSGMTDL 596

Query: 501 LGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNY 560
           LGRAG   E E  I     + + L W  LL AC  HG++E   K A ++L   P   +  
Sbjct: 597 LGRAGFLDEAEEVIKRIPFSQDELPWMTLLSACKVHGDVERGRKVAGQVLRWNPGDSAAR 656

Query: 561 VFPSDISA 568
           V  S+I A
Sbjct: 657 VALSNIFA 664



 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 161/555 (29%), Positives = 273/555 (49%), Gaps = 49/555 (8%)

Query: 53  SLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI 112
           S  T LK       + AG+ +H + I  G      +  +LV+MY KCG    A +VF  +
Sbjct: 8   SFITALKSCVRIQSLAAGKFIHLLVIESGLLTQISVGNALVNMYGKCGSLALAREVFDGM 67

Query: 113 KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESS-VKPNQFVLTSLVRATTETGDQRCG 171
              DV++W A+IT   Q G C+EA ++F  M+E   ++P+     ++V A  +      G
Sbjct: 68  DHRDVISWNAVITAYAQAGHCKEAMELFQAMQEDGRIEPDSVTFVAVVSACCDPSALEAG 127

Query: 172 ESIHAVICKYG-FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
           + I A++ + G  +SD ++GNALV+MY + G +   + VFE +  +D VSWNA+ S    
Sbjct: 128 DKIFALVEERGLLDSDVVLGNALVNMYSKCGSLKSATMVFERMKIRDVVSWNAIISALAR 187

Query: 231 YESPDQGLRIFYQMLLKGFK-------PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS 283
           ++  D  ++ F +M L+G         P+  T    L AC+    +  G+++HA  I+  
Sbjct: 188 HDRKDIAMQRFREMQLEGLSPKEEALLPDGFTLASALAACTGPEMLEEGREIHALVIERG 247

Query: 284 LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFR 343
            +   VVG +LV MY   G L+DA   F  +A +++ ++ A+I +Y      + A + F 
Sbjct: 248 CESELVVGNALVSMYANCGTLQDALECFQKMAQRNVVSWNAMIAAYVHHNCDKEAFRIFH 307

Query: 344 KMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403
           +M+LEG++ N  T  + L+ CS  A   +G  LHSI  ++G   D  V  A+V M+AKC 
Sbjct: 308 QMQLEGVQPNSVTFVTFLSACSTPAAFEDGLQLHSIVRESGLEADASVGNAVVHMFAKCW 367

Query: 404 SIDDAEAVFK--------------GSAL-----------------RDTASWNMMIGGYVK 432
           S+DDA A F+              G+ +                 RD  +WNM++G YV+
Sbjct: 368 SLDDALAAFQRIPQKNLGSWNGLLGAYIHVGRLAEARKLFEVMEERDVITWNMILGAYVE 427

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK 492
             + ++A+  FR M+ EG   + IT+  +L AC+   L+ EG++    I +  G    + 
Sbjct: 428 REMAKEAVRLFRRMIAEGTKSNSITWTTMLGACAGEALLAEGRRIHELIGE-RGADSELF 486

Query: 493 HFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLEL 552
               ++D+ G+              +   +A  W  L+ A + +G       DAE+ L+ 
Sbjct: 487 VGNALVDMFGKCASLGGARQAFERIR-GKDASSWNVLVAALAQNG-------DAEEALKQ 538

Query: 553 EPKMESNYVFPSDIS 567
             +M+   + P+D++
Sbjct: 539 FLQMQREGIKPTDVT 553



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 110/343 (32%), Positives = 187/343 (54%), Gaps = 9/343 (2%)

Query: 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRV 209
           P+     + +++         G+ IH ++ + G  +   VGNALV+MY + G ++    V
Sbjct: 4   PDNVSFITALKSCVRIQSLAAGKFIHLLVIESGLLTQISVGNALVNMYGKCGSLALAREV 63

Query: 210 FEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG-FKPNMCTFIVILKACSSLSD 268
           F+ + H+D +SWNA+ + +       + + +F  M   G  +P+  TF+ ++ AC   S 
Sbjct: 64  FDGMDHRDVISWNAVITAYAQAGHCKEAMELFQAMQEDGRIEPDSVTFVAVVSACCDPSA 123

Query: 269 VGFGKQLHAHTIKHS-LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIIT 327
           +  G ++ A   +   LD + V+G +LV+MY K G L+ A + F+ +  +D+ ++ AII+
Sbjct: 124 LEAGDKIFALVEERGLLDSDVVLGNALVNMYSKCGSLKSATMVFERMKIRDVVSWNAIIS 183

Query: 328 SYAQAGEAEMALKCFRKMRLEGIKSNE-------FTLASCLNGCSPVATLANGRLLHSIA 380
           + A+    ++A++ FR+M+LEG+   E       FTLAS L  C+    L  GR +H++ 
Sbjct: 184 ALARHDRKDIAMQRFREMQLEGLSPKEEALLPDGFTLASALAACTGPEMLEEGREIHALV 243

Query: 381 VKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKAL 440
           ++ G   ++ V  ALV+MYA CG++ DA   F+  A R+  SWN MI  YV H   ++A 
Sbjct: 244 IERGCESELVVGNALVSMYANCGTLQDALECFQKMAQRNVVSWNAMIAAYVHHNCDKEAF 303

Query: 441 EAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
             F  M  EG  P+ +TFV  LSACS     E+G +  S +++
Sbjct: 304 RIFHQMQLEGVQPNSVTFVTFLSACSTPAAFEDGLQLHSIVRE 346



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 130/238 (54%), Gaps = 9/238 (3%)

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           G  P+  +FI  LK+C  +  +  GK +H   I+  L     VG +LV+MY K G L  A
Sbjct: 1   GLLPDNVSFITALKSCVRIQSLAAGKFIHLLVIESGLLTQISVGNALVNMYGKCGSLALA 60

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG-IKSNEFTLASCLNGCSP 366
              FD + ++D+ ++ A+IT+YAQAG  + A++ F+ M+ +G I+ +  T  + ++ C  
Sbjct: 61  REVFDGMDHRDVISWNAVITAYAQAGHCKEAMELFQAMQEDGRIEPDSVTFVAVVSACCD 120

Query: 367 VATLANGRLLHSIAVKTGHL-LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
            + L  G  + ++  + G L  D+ +  ALV MY+KCGS+  A  VF+   +RD  SWN 
Sbjct: 121 PSALEAGDKIFALVEERGLLDSDVVLGNALVNMYSKCGSLKSATMVFERMKIRDVVSWNA 180

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEG-------YVPDEITFVVVLSACSHMGLIEEGKK 476
           +I    +H   + A++ FR M  EG        +PD  T    L+AC+   ++EEG++
Sbjct: 181 IISALARHDRKDIAMQRFREMQLEGLSPKEEALLPDGFTLASALAACTGPEMLEEGRE 238



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 113/230 (49%), Gaps = 8/230 (3%)

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
           G+  +  +  + L  C  + +LA G+ +H + +++G L  + V  ALV MY KCGS+  A
Sbjct: 1   GLLPDNVSFITALKSCVRIQSLAAGKFIHLLVIESGLLTQISVGNALVNMYGKCGSLALA 60

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV-PDEITFVVVLSACSH 467
             VF G   RD  SWN +I  Y + G  ++A+E F+ M ++G + PD +TFV V+SAC  
Sbjct: 61  REVFDGMDHRDVISWNAVITAYAQAGHCKEAMELFQAMQEDGRIEPDSVTFVAVVSACCD 120

Query: 468 MGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWE 527
              +E G K F+ +++   +   +     ++++  + G            K+  + + W 
Sbjct: 121 PSALEAGDKIFALVEERGLLDSDVVLGNALVNMYSKCGSLKSATMVFERMKIR-DVVSWN 179

Query: 528 NLLGACSWHG--NIELDEKDAEKLLELEPKMES----NYVFPSDISATQG 571
            ++ A + H   +I +      +L  L PK E+     +   S ++A  G
Sbjct: 180 AIISALARHDRKDIAMQRFREMQLEGLSPKEEALLPDGFTLASALAACTG 229


>gi|297834550|ref|XP_002885157.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330997|gb|EFH61416.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 655

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 192/607 (31%), Positives = 321/607 (52%), Gaps = 9/607 (1%)

Query: 1   MELAKRVFKSMP--ELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVL 58
           +ELA+ VF  +P   +N ++W+ ++  Y  +G  +K + L+  M +   + +KF+   VL
Sbjct: 51  VELARHVFDEIPHPRINPIAWDLMIRAYVSNGFAEKALDLYYKMLNSGVRPTKFTYPFVL 110

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
           K  A    I+ G+++H+       A D ++  +LVD Y+KCG  D A+KVF  +   D+V
Sbjct: 111 KACAGLRAIEDGKLIHSHVKCSNFAADMYVCTALVDFYAKCGELDMAIKVFDEMPKRDIV 170

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESS-VKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           AW A+I+      C  +   +F  MR S  + PN   +  +  A    G  R G+++H  
Sbjct: 171 AWNAMISGFSLHCCLTDVIGLFLDMRRSDCLSPNLSTIVGMFPALGRAGALREGKAVHGY 230

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
             + GF +D +V   ++ +Y ++  + Y  RVF++   ++ V+W+A+   + + E   + 
Sbjct: 231 CTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDSDFKKNEVTWSAMIGGYVENEMIKEA 290

Query: 238 LRIFYQMLLKGFKPNMCTFI---VILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
             +F QML+      M T +   +IL  C+   D+  G+ +H + IK     +  VG ++
Sbjct: 291 GEVFLQMLVNA-DMAMVTPVAIGLILMGCARFGDLSGGRCVHCYAIKAGFILDLTVGNTV 349

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           +  Y K G L DA   F  +  KD+ +Y ++I+   +   AE + + F +M+  GI+ + 
Sbjct: 350 ISFYAKYGSLCDAFRQFTEIGLKDIVSYNSLISGCVENCRAEESFRLFHQMKSSGIRPDI 409

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            TL   L  CS +A L +G   H   V  G+ ++  +  AL+ MY KCG +  A+ VF  
Sbjct: 410 TTLLGILTACSNLAALGHGSSCHGYCVVNGYAVNTSICNALMDMYTKCGKLYVAKRVFDT 469

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
              RD  SWN M+ G+  HGLG++AL  F  M D G  PDE+T + +LSACSH GL++EG
Sbjct: 470 MHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQDTGVHPDEVTLLAILSACSHSGLVDEG 529

Query: 475 KKHFSSIKK-IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           K+ F+S+ +  + + P + H+ CM D+L RAG   E  +F+ +    P+  V   LL AC
Sbjct: 530 KQLFNSMSRGDFNVIPRLDHYNCMTDLLARAGYLDEAYDFVNKMPFEPDIRVLGTLLSAC 589

Query: 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPS 593
             + N+EL  + ++K+  L    ES  +  +  SA + RW D + +R      G+ K P 
Sbjct: 590 WTYKNVELGNEVSKKMQSLGETTESLVLLSNTYSAAE-RWEDAAKIRMTQKKSGLLKTPG 648

Query: 594 CSWIEVD 600
            SW++VD
Sbjct: 649 YSWVDVD 655



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 149/334 (44%), Gaps = 12/334 (3%)

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLD-GNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
           F+ +L++C    ++  G+ +H H +K SL   +  V  +L  +Y     +E A   FD +
Sbjct: 2   FLRLLESCIRSRNLILGQIIHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELARHVFDEI 61

Query: 315 ANKDL--FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
            +  +   A+  +I +Y   G AE AL  + KM   G++  +FT    L  C+ +  + +
Sbjct: 62  PHPRINPIAWDLMIRAYVSNGFAEKALDLYYKMLNSGVRPTKFTYPFVLKACAGLRAIED 121

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
           G+L+HS    +    DM+V TALV  YAKCG +D A  VF     RD  +WN MI G+  
Sbjct: 122 GKLIHSHVKCSNFAADMYVCTALVDFYAKCGELDMAIKVFDEMPKRDIVAWNAMISGFSL 181

Query: 433 HGLGEKALEAF-RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI 491
           H      +  F  M   +   P+  T V +  A    G + EGK       ++ G +  +
Sbjct: 182 HCCLTDVIGLFLDMRRSDCLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRM-GFSNDL 240

Query: 492 KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551
                ++D+  ++ K       + ++    N + W  ++G    +   E+ ++  E  L+
Sbjct: 241 VVKTGILDVYAKS-KCIIYARRVFDSDFKKNEVTWSAMIGG---YVENEMIKEAGEVFLQ 296

Query: 552 LEPKMESNYVFPSDISATQ---GRWNDFSGVRAL 582
           +    +   V P  I        R+ D SG R +
Sbjct: 297 MLVNADMAMVTPVAIGLILMGCARFGDLSGGRCV 330


>gi|326522859|dbj|BAJ88475.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 691

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 197/598 (32%), Positives = 310/598 (51%), Gaps = 11/598 (1%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           +F  MP  NVV+W + ++G   +G  +    +F  M +     + F+ +  L   A +G 
Sbjct: 51  LFDRMPRKNVVAWTSAVSGLTRNGRPEAAGEMFADMVESGVALNDFACNAALAACAAAGP 110

Query: 67  I--KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
              + G+ VH++A+R G   D ++   LV++Y++CG    A  V  R++ PDVVA+ +++
Sbjct: 111 GALRTGEQVHSLAVRAGFVGDAWVGSCLVELYARCGSTRAAEAVLARMESPDVVAYTSLV 170

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK-YGF 183
           + L + G    AA+    M    V PN+  +TS++ A         G  IH  + K  GF
Sbjct: 171 SALCRSGEFGMAAEALGQMMGHGVMPNEHTVTSILAACCPL---VLGVQIHGYMIKAMGF 227

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
                  + LV  Y  NG       VF+ +  ++ V+W  +         P+  L++F +
Sbjct: 228 SQSVYTSSTLVDFYSRNGEFDMAKTVFDNLQCKNVVTWCTMMQLHIRDGRPEDALQLFDE 287

Query: 244 MLLKGF-KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           M+ +G   PN   F + L AC S   +  G QLH+  IKH L  +  V  +L+ MY + G
Sbjct: 288 MISEGVVSPNEFAFSIALGACES---IALGSQLHSLAIKHGLASHLRVSNALLSMYGRIG 344

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            ++     F  + + D+ ++TA I++Y Q G  E A+    +M  +G+  N++  +S L+
Sbjct: 345 LVQQLEAMFRGIEDPDIVSWTAAISAYFQNGHGEKAIALLSRMHSQGLTPNDYAFSSVLS 404

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+ +A L  GR  H +A+K G  +      AL+ MY+KCG I  A   F     RD  S
Sbjct: 405 SCADLALLDQGRQFHCLALKLGCDVKTCTGNALINMYSKCGQIVPARLAFDIMDHRDVTS 464

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF-SSI 481
           WN +I G+ +HG  +  L+AF  M   G  P+E T + VL+AC+H GL++EG   F S++
Sbjct: 465 WNSLIHGHAQHGEVDMVLKAFSEMCSNGGEPNESTLLGVLAACNHAGLVDEGVAFFRSAM 524

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
             +YG   T  H+ACM+D+LGR+G+F +    I E    P  LVW+ LL +C  HGN+E 
Sbjct: 525 AGLYGTFLTPPHYACMVDMLGRSGRFDDALCLIEEMPFEPGVLVWKTLLASCRLHGNLET 584

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
               AEKL+EL  +  ++YV  S I A  G W D   VR  +   G++KE   SW+EV
Sbjct: 585 GRLAAEKLVELSDQDSASYVLMSGIHAMHGEWRDADMVRRRMDEAGVRKEAGRSWVEV 642



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 133/460 (28%), Positives = 215/460 (46%), Gaps = 20/460 (4%)

Query: 90  CSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK 149
           C  +D   K G   +AL +F R+   +VVAW + ++ L + G  + A ++F  M ES V 
Sbjct: 33  CKRLDGLMKAGRVADALDLFDRMPRKNVVAWTSAVSGLTRNGRPEAAGEMFADMVESGVA 92

Query: 150 PNQF--VLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGS 207
            N F         A    G  R GE +H++  + GF  D  VG+ LV +Y   G      
Sbjct: 93  LNDFACNAALAACAAAGPGALRTGEQVHSLAVRAGFVGDAWVGSCLVELYARCGSTRAAE 152

Query: 208 RVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLS 267
            V   +   D V++ +L S                QM+  G  PN  T   IL AC  L 
Sbjct: 153 AVLARMESPDVVAYTSLVSALCRSGEFGMAAEALGQMMGHGVMPNEHTVTSILAACCPLV 212

Query: 268 DVGFGKQLHAHTIKHSLDGNHVVGTS--LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
               G Q+H + IK ++  +  V TS  LVD Y ++G  + A   FD+L  K++  +  +
Sbjct: 213 ---LGVQIHGYMIK-AMGFSQSVYTSSTLVDFYSRNGEFDMAKTVFDNLQCKNVVTWCTM 268

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKS-NEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           +  + + G  E AL+ F +M  EG+ S NEF  +  L  C  +A    G  LHS+A+K G
Sbjct: 269 MQLHIRDGRPEDALQLFDEMISEGVVSPNEFAFSIALGACESIAL---GSQLHSLAIKHG 325

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
               + VS AL++MY + G +   EA+F+G    D  SW   I  Y ++G GEKA+    
Sbjct: 326 LASHLRVSNALLSMYGRIGLVQQLEAMFRGIEDPDIVSWTAAISAYFQNGHGEKAIALLS 385

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA 504
            M  +G  P++  F  VLS+C+ + L+++G++ F  +    G          +I++  + 
Sbjct: 386 RMHSQGLTPNDYAFSSVLSSCADLALLDQGRQ-FHCLALKLGCDVKTCTGNALINMYSKC 444

Query: 505 GKFTEIE---NFITETKLTPNALVWENLLGACSWHGNIEL 541
           G+        + +    +T     W +L+   + HG +++
Sbjct: 445 GQIVPARLAFDIMDHRDVTS----WNSLIHGHAQHGEVDM 480



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 149/311 (47%), Gaps = 10/311 (3%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLKG 60
           ++AK VF ++   NVV+W  ++  +   G  +  + LF  M  +     ++F+ S  L  
Sbjct: 248 DMAKTVFDNLQCKNVVTWCTMMQLHIRDGRPEDALQLFDEMISEGVVSPNEFAFSIALGA 307

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +   I  G  +H++AI+ G A    +S +L+ MY + GL      +F  I+DPD+V+W
Sbjct: 308 CES---IALGSQLHSLAIKHGLASHLRVSNALLSMYGRIGLVQQLEAMFRGIEDPDIVSW 364

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A I+   Q G  ++A  + + M    + PN +  +S++ +  +      G   H +  K
Sbjct: 365 TAAISAYFQNGHGEKAIALLSRMHSQGLTPNDYAFSSVLSSCADLALLDQGRQFHCLALK 424

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G +  T  GNAL++MY + G++      F+ + H+D  SWN+L      +   D  L+ 
Sbjct: 425 LGCDVKTCTGNALINMYSKCGQIVPARLAFDIMDHRDVTSWNSLIHGHAQHGEVDMVLKA 484

Query: 241 FYQMLLKGFKPNMCTFIVILKAC--SSLSD--VGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
           F +M   G +PN  T + +L AC  + L D  V F +   A      L   H     +VD
Sbjct: 485 FSEMCSNGGEPNESTLLGVLAACNHAGLVDEGVAFFRSAMAGLYGTFLTPPHY--ACMVD 542

Query: 297 MYDKSGCLEDA 307
           M  +SG  +DA
Sbjct: 543 MLGRSGRFDDA 553



 Score = 46.6 bits (109), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 3/124 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+  F  M   +V SWN+L++G+A+ G+   V+  F  M     + ++ +L  VL    +
Sbjct: 450 ARLAFDIMDHRDVTSWNSLIHGHAQHGEVDMVLKAFSEMCSNGGEPNESTLLGVLAACNH 509

Query: 64  SGYIKAGQVV--HAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVVAW 120
           +G +  G      AMA   G  L       +VDM  + G  D+AL +   +  +P V+ W
Sbjct: 510 AGLVDEGVAFFRSAMAGLYGTFLTPPHYACMVDMLGRSGRFDDALCLIEEMPFEPGVLVW 569

Query: 121 GAII 124
             ++
Sbjct: 570 KTLL 573


>gi|297816638|ref|XP_002876202.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322040|gb|EFH52461.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 769

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 192/599 (32%), Positives = 317/599 (52%), Gaps = 2/599 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF  MPE N+VS+ +++ GY+++G   + + L+  M   +    +F+  +++K  A 
Sbjct: 118 AREVFDFMPERNLVSYTSVITGYSQNGQEAEAITLYLKMLQADLVPDQFAFGSIIKACAC 177

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +G +  G+ +HA  I+L  +       +L+ MY +     +A KVFY I   D+++W +I
Sbjct: 178 AGDVVLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASKVFYGIPAKDLISWSSI 237

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSV-KPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I    Q G   EA      M    V  PN+++  S ++A +       G  IH +  K  
Sbjct: 238 IAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKLE 297

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
              + + G +L  MY   G +    RVF  I   D+ SWN + +   +    D+ + +F 
Sbjct: 298 LTGNAIAGCSLCDMYARCGFLDSARRVFNQIERPDTASWNVIIAGLANNGYADEAVSVFS 357

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M   GF P+  +   +L A +    +  G Q+H+  IK     +  V  SL+ MY    
Sbjct: 358 EMRNSGFIPDAISLRSLLCAQTKPMALCQGMQIHSFIIKCGFLADLSVCNSLLTMYTFCS 417

Query: 303 CLEDAGVAFDSLANK-DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
            L      F+   NK D  ++ AI+T+  Q  +    L+ F+ M +   + +  T+ + L
Sbjct: 418 DLYCCFNLFEDFRNKADSVSWNAILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLL 477

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
            GC  +++L  G  +H  + KTG +L+ F+   L+ MYAKCGS+  A  +F      D  
Sbjct: 478 RGCVEISSLKLGSQVHCYSWKTGLVLEQFIKNGLIDMYAKCGSLRQARRIFDSMDNGDVV 537

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SW+ +I GY + G GE+AL  FR M   G  P+ +TFV VL+ACSH+GL+EEG K ++ +
Sbjct: 538 SWSTLIVGYAQSGFGEEALILFREMKSSGIEPNHVTFVGVLTACSHVGLVEEGLKLYAIM 597

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
           +  +GI+PT +H +C++D+L RAG   E E FI E KL P+ +VW+ LL AC   GN++L
Sbjct: 598 QTEHGISPTKEHCSCVVDLLARAGHLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVDL 657

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
            +K AE +L+++P   + +V    + A+ G W D + +R+ +    +KK P  SWI+V+
Sbjct: 658 AQKAAENILKIDPFNSTAHVLLCSMHASSGNWEDAALLRSSMKKHDVKKIPGQSWIDVE 716



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 138/449 (30%), Positives = 228/449 (50%), Gaps = 9/449 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESG-DGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           M  A +VF  +P  +++SW++++ G+++ G + + + HL   +       +++   + LK
Sbjct: 216 MSDASKVFYGIPAKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLK 275

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             ++      G  +H + I+L    +    CSL DMY++CG  D+A +VF +I+ PD  +
Sbjct: 276 ACSSLLRPDYGSQIHGLCIKLELTGNAIAGCSLCDMYARCGFLDSARRVFNQIERPDTAS 335

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  II  L   G   EA  +F+ MR S   P+   L SL+ A T+      G  IH+ I 
Sbjct: 336 WNVIIAGLANNGYADEAVSVFSEMRNSGFIPDAISLRSLLCAQTKPMALCQGMQIHSFII 395

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-DSVSWNALFSRFQDYESPDQGL 238
           K GF +D  V N+L++MY     +     +FE   ++ DSVSWNA+ +    +E P + L
Sbjct: 396 KCGFLADLSVCNSLLTMYTFCSDLYCCFNLFEDFRNKADSVSWNAILTACLQHEQPVEML 455

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           R+F  ML+   +P+  T   +L+ C  +S +  G Q+H ++ K  L     +   L+DMY
Sbjct: 456 RLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSWKTGLVLEQFIKNGLIDMY 515

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G L  A   FDS+ N D+ +++ +I  YAQ+G  E AL  FR+M+  GI+ N  T  
Sbjct: 516 AKCGSLRQARRIFDSMDNGDVVSWSTLIVGYAQSGFGEEALILFREMKSSGIEPNHVTFV 575

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS--TALVAMYAKCGSIDDAEAVFKGSA 416
             L  CS V  +  G  L++I ++T H +       + +V + A+ G +++AE       
Sbjct: 576 GVLTACSHVGLVEEGLKLYAI-MQTEHGISPTKEHCSCVVDLLARAGHLNEAERFIDEMK 634

Query: 417 LR-DTASWNMMIGGYVKHG---LGEKALE 441
           L  D   W  ++      G   L +KA E
Sbjct: 635 LEPDVVVWKTLLSACKTQGNVDLAQKAAE 663



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 153/556 (27%), Positives = 263/556 (47%), Gaps = 26/556 (4%)

Query: 44  DMEKKFSKFSLS-----TVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSK 98
           D  +K S F +      +++   ++S  +  G+ +H   +   C  D  L+  ++ MY K
Sbjct: 52  DFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGK 111

Query: 99  CGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSL 158
           CG   +A +VF  + + ++V++ ++IT   Q G   EA  ++  M ++ + P+QF   S+
Sbjct: 112 CGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQEAEAITLYLKMLQADLVPDQFAFGSI 171

Query: 159 VRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDS 218
           ++A    GD   G+ +HA + K    S  +  NAL++MY+   ++S  S+VF  I  +D 
Sbjct: 172 IKACACAGDVVLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASKVFYGIPAKDL 231

Query: 219 VSWNALFSRFQDYESPDQGLRIFYQMLLKG-FKPNMCTFIVILKACSSLSDVGFGKQLHA 277
           +SW+++ + F       + L    +ML  G F PN   F   LKACSSL    +G Q+H 
Sbjct: 232 ISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHG 291

Query: 278 HTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEM 337
             IK  L GN + G SL DMY + G L+ A   F+ +   D  ++  II   A  G A+ 
Sbjct: 292 LCIKLELTGNAIAGCSLCDMYARCGFLDSARRVFNQIERPDTASWNVIIAGLANNGYADE 351

Query: 338 ALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVA 397
           A+  F +MR  G   +  +L S L   +    L  G  +HS  +K G L D+ V  +L+ 
Sbjct: 352 AVSVFSEMRNSGFIPDAISLRSLLCAQTKPMALCQGMQIHSFIIKCGFLADLSVCNSLLT 411

Query: 398 MYAKCGSIDDAEAVFKGSALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI 456
           MY  C  +     +F+    + D+ SWN ++   ++H    + L  F++ML     PD I
Sbjct: 412 MYTFCSDLYCCFNLFEDFRNKADSVSWNAILTACLQHEQPVEMLRLFKLMLVSECEPDHI 471

Query: 457 TFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFIT 515
           T   +L  C  +  ++ G + H  S K    +   IK+   +ID+  + G   +    I 
Sbjct: 472 TMGNLLRGCVEISSLKLGSQVHCYSWKTGLVLEQFIKN--GLIDMYAKCGSLRQARR-IF 528

Query: 516 ETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWND 575
           ++    + + W  L+   +  G         E+ L L  +M+S+ + P+ ++        
Sbjct: 529 DSMDNGDVVSWSTLIVGYAQSGF-------GEEALILFREMKSSGIEPNHVT-------- 573

Query: 576 FSGVRALLSSQGIKKE 591
           F GV    S  G+ +E
Sbjct: 574 FVGVLTACSHVGLVEE 589


>gi|222626139|gb|EEE60271.1| hypothetical protein OsJ_13308 [Oryza sativa Japonica Group]
          Length = 758

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 195/610 (31%), Positives = 325/610 (53%), Gaps = 11/610 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A+ +F  MP  + VSWN L+ GY+  G  +  +  F   +       +F+ +  L  
Sbjct: 26  MRHARLLFDGMPRRDAVSWNTLIAGYSGLGSCRLALDAFRDARASGDGVDRFTFAAALAS 85

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A  G  + G+VVH +A+  G A   FL+ S++DMY+KCG+ D    +F R ++    +W
Sbjct: 86  CARVGDWRDGRVVHGLAVVSGLARTAFLTNSVIDMYAKCGMIDEVRLLFDRAEERGEASW 145

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD-QRCGESIHAVIC 179
             +++   + G  + A  +   M  S VK + F L  +++A +E GD +     +H+ + 
Sbjct: 146 NLLLSAYVRMGWPEVAVNVLVWMHRSGVKLDSFALGGILKACSELGDSEDVRRMLHSCVV 205

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNAL---FSRFQDYESPD- 235
           K G + D  VG+A+V MY +NG +    +VF+ I +Q+ V +NA+   F+R  +   P+ 
Sbjct: 206 KVGLDLDVFVGSAMVDMYAKNGGLEEAIKVFDCIPNQNVVVYNAMIAGFARLGNDPCPEI 265

Query: 236 --QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
             + + +F  ML K  KP+  TF  +L+ C+  + V  G+Q+HAH I   L G+  + + 
Sbjct: 266 RIEAVTLFSNMLKKRIKPSKFTFKSVLEVCNLTNAVRCGRQIHAHVILSGLQGDEFIASV 325

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           L+++Y K+ C+ D+   FD    +D+F +T++IT++ Q    E AL  FR++      ++
Sbjct: 326 LINLYSKARCVNDSLRCFDMTVKEDVFIWTSMITAFVQNEHFEKALYLFRELLYTRKGTD 385

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFV--STALVAMYAKCGSIDDAEAV 411
           +FT++S ++ C+ ++     + +H  AVKTG  LD F     + +AMY   G +  ++  
Sbjct: 386 QFTISSVMSACAALSVPTTCKQIHCHAVKTG--LDQFTVSGNSQIAMYRNIGDLKASKQT 443

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F+  +  DT SW+ MI  Y  HG   KALE F  M + G + +E   +  L ACSH GL 
Sbjct: 444 FEQISCLDTFSWSAMILSYAVHGYESKALELFEKMKNLGVMMNESASLAALIACSHQGLG 503

Query: 472 EEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLG 531
           +EG +++ +     G +  +K  ACM+D+LGR GK  + E+FI  +    + ++W  LL 
Sbjct: 504 DEGLRYYENTIPDDGFSLDVKLKACMVDLLGRVGKIADAEDFIMSSGSENDPILWHALLR 563

Query: 532 ACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
           AC  HG+ E   K  EKL+ELEP   S+YV   ++    G+ +     R L+  +GI  E
Sbjct: 564 ACRVHGDKERCTKIGEKLMELEPFSASSYVMLYNLYMDAGKISLAMRTRGLMRERGISNE 623

Query: 592 PSCSWIEVDG 601
              SW +  G
Sbjct: 624 AGISWTDFGG 633



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 113/404 (27%), Positives = 192/404 (47%), Gaps = 8/404 (1%)

Query: 87  FLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRES 146
           FL  +L+ +Y +CG   +A  +F  +   D V+W  +I      G C+ A   F   R S
Sbjct: 11  FLRNNLLALYCRCGDMRHARLLFDGMPRRDAVSWNTLIAGYSGLGSCRLALDAFRDARAS 70

Query: 147 SVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYG 206
               ++F   + + +    GD R G  +H +    G      + N+++ MY + G +   
Sbjct: 71  GDGVDRFTFAAALASCARVGDWRDGRVVHGLAVVSGLARTAFLTNSVIDMYAKCGMIDEV 130

Query: 207 SRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266
             +F+    +   SWN L S +     P+  + +   M   G K +      ILKACS L
Sbjct: 131 RLLFDRAEERGEASWNLLLSAYVRMGWPEVAVNVLVWMHRSGVKLDSFALGGILKACSEL 190

Query: 267 SDV-GFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
            D     + LH+  +K  LD +  VG+++VDMY K+G LE+A   FD + N+++  Y A+
Sbjct: 191 GDSEDVRRMLHSCVVKVGLDLDVFVGSAMVDMYAKNGGLEEAIKVFDCIPNQNVVVYNAM 250

Query: 326 ITSYAQAGEAEM------ALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSI 379
           I  +A+ G          A+  F  M  + IK ++FT  S L  C+    +  GR +H+ 
Sbjct: 251 IAGFARLGNDPCPEIRIEAVTLFSNMLKKRIKPSKFTFKSVLEVCNLTNAVRCGRQIHAH 310

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
            + +G   D F+++ L+ +Y+K   ++D+   F  +   D   W  MI  +V++   EKA
Sbjct: 311 VILSGLQGDEFIASVLINLYSKARCVNDSLRCFDMTVKEDVFIWTSMITAFVQNEHFEKA 370

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK 482
           L  FR +L      D+ T   V+SAC+ + +    K+ H  ++K
Sbjct: 371 LYLFRELLYTRKGTDQFTISSVMSACAALSVPTTCKQIHCHAVK 414



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 108/218 (49%)

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
            +L+ +Y + G +  A + FD +  +D  ++  +I  Y+  G   +AL  FR  R  G  
Sbjct: 14  NNLLALYCRCGDMRHARLLFDGMPRRDAVSWNTLIAGYSGLGSCRLALDAFRDARASGDG 73

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            + FT A+ L  C+ V    +GR++H +AV +G     F++ +++ MYAKCG ID+   +
Sbjct: 74  VDRFTFAAALASCARVGDWRDGRVVHGLAVVSGLARTAFLTNSVIDMYAKCGMIDEVRLL 133

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F  +  R  ASWN+++  YV+ G  E A+     M   G   D      +L ACS +G  
Sbjct: 134 FDRAEERGEASWNLLLSAYVRMGWPEVAVNVLVWMHRSGVKLDSFALGGILKACSELGDS 193

Query: 472 EEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTE 509
           E+ ++   S     G+   +   + M+D+  + G   E
Sbjct: 194 EDVRRMLHSCVVKVGLDLDVFVGSAMVDMYAKNGGLEE 231



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 2/144 (1%)

Query: 389 MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
           +F+   L+A+Y +CG +  A  +F G   RD  SWN +I GY   G    AL+AFR    
Sbjct: 10  LFLRNNLLALYCRCGDMRHARLLFDGMPRRDAVSWNTLIAGYSGLGSCRLALDAFRDARA 69

Query: 449 EGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFT 508
            G   D  TF   L++C+ +G   +G+     +  + G+  T      +ID+  + G   
Sbjct: 70  SGDGVDRFTFAAALASCARVGDWRDGRV-VHGLAVVSGLARTAFLTNSVIDMYAKCGMID 128

Query: 509 EIENFITETKLTPNALVWENLLGA 532
           E+       +    A  W  LL A
Sbjct: 129 EVRLLFDRAEERGEA-SWNLLLSA 151


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 188/600 (31%), Positives = 316/600 (52%), Gaps = 3/600 (0%)

Query: 4   AKRVFKSMPELNVVS-WNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLKGF 61
           AK VF +M     +S WN L+ GY ++    + + LF  +      K   ++  +VLK  
Sbjct: 57  AKCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKAC 116

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
                   G+++H   ++ G  +D  +  SLV MY+KC   + A+ +F  + + DV  W 
Sbjct: 117 GGLYKYVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWN 176

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            +I+C  Q G  +EA + F LMR    +PN   +T+ + +     D   G  IH  +   
Sbjct: 177 TVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINS 236

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           GF  D+ + +ALV MY + G +     VFE +  +  V+WN++ S +         +++F
Sbjct: 237 GFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLF 296

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M  +G KP + T   ++  CS  + +  GK +H +TI++ +  +  + +SL+D+Y K 
Sbjct: 297 KRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKC 356

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G +E A   F  +    + ++  +I+ Y   G+   AL  F +MR   ++ +  T  S L
Sbjct: 357 GKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVL 416

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
             CS +A L  G  +H++ ++     +  V  AL+ MYAKCG++D+A +VFK    RD  
Sbjct: 417 TACSQLAALEKGEEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLV 476

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SW  MI  Y  HG    ALE F  ML     PD +TF+ +LSAC H GL++EG  +F+ +
Sbjct: 477 SWTSMITAYGSHGQAYVALELFAEMLQSNMKPDRVTFLAILSACGHAGLVDEGCYYFNQM 536

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITET-KLTPNALVWENLLGACSWHGNIE 540
             +YGI P ++H++C+ID+LGRAG+  E    + +  ++  +  +   L  AC  H NI+
Sbjct: 537 VNVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNID 596

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           L  + A  L++ +P   S Y+  S++ A+  +W++   VR+ +   G+KK P CSWIE++
Sbjct: 597 LGAEIARTLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIEIN 656



 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 141/489 (28%), Positives = 241/489 (49%), Gaps = 8/489 (1%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
           L  +L+   NS  +K G+++H   + LG   D FL  +L+++Y  C L D+A  VF  ++
Sbjct: 6   LLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNME 65

Query: 114 DP-DVVAWGAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCG 171
           +P ++  W  ++    +     EA ++F  L+    +KP+ +   S+++A         G
Sbjct: 66  NPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLG 125

Query: 172 ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY 231
           + IH  + K G   D +VG++LV MY +         +F  +  +D   WN + S +   
Sbjct: 126 KMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQS 185

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
            +  + L  F  M   GF+PN  T    + +C+ L D+  G ++H   I      +  + 
Sbjct: 186 GNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFIS 245

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
           ++LVDMY K G LE A   F+ +  K + A+ ++I+ Y   G++   ++ F++M  EG+K
Sbjct: 246 SALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVK 305

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
               TL+S +  CS  A L  G+ +H   ++     D+F++++L+ +Y KCG ++ AE +
Sbjct: 306 PTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENI 365

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           FK        SWN+MI GYV  G   +AL  F  M      PD ITF  VL+ACS +  +
Sbjct: 366 FKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAAL 425

Query: 472 EEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV-WENL 529
           E+G++ H   I+K       +     ++D+  + G   E   F     L    LV W ++
Sbjct: 426 EKGEEIHNLIIEKKLDNNEVV--MGALLDMYAKCGAVDEA--FSVFKCLPKRDLVSWTSM 481

Query: 530 LGACSWHGN 538
           + A   HG 
Sbjct: 482 ITAYGSHGQ 490



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 125/465 (26%), Positives = 230/465 (49%), Gaps = 5/465 (1%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E A  +F  MPE +V  WN +++ Y +SG+ ++ +  F  M+    + +  +++T +   
Sbjct: 158 EKAIWLFNEMPEKDVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSC 217

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           A    +  G  +H   I  G  LD F+S +LVDMY KCG  + A++VF ++    VVAW 
Sbjct: 218 ARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWN 277

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           ++I+    +G      ++F  M    VKP    L+SL+   + +     G+ +H    + 
Sbjct: 278 SMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRN 337

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
             +SD  + ++L+ +Y + G+V     +F+ I     VSWN + S +       + L +F
Sbjct: 338 RIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLF 397

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M     +P+  TF  +L ACS L+ +  G+++H   I+  LD N VV  +L+DMY K 
Sbjct: 398 SEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLIIEKKLDNNEVVMGALLDMYAKC 457

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G +++A   F  L  +DL ++T++IT+Y   G+A +AL+ F +M    +K +  T  + L
Sbjct: 458 GAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGQAYVALELFAEMLQSNMKPDRVTFLAIL 517

Query: 362 NGCSPVATLANGRLLHSIAVKT-GHLLDMFVSTALVAMYAKCGSIDDA-EAVFKGSALRD 419
           + C     +  G    +  V   G +  +   + L+ +  + G + +A E + +   +RD
Sbjct: 518 SACGHAGLVDEGCYYFNQMVNVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRD 577

Query: 420 TAS-WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
                + +      H   +   E  R ++D+   PD+ +  ++LS
Sbjct: 578 DVELLSTLFSACRLHRNIDLGAEIARTLIDKD--PDDSSTYILLS 620



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 165/312 (52%), Gaps = 9/312 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E+A  VF+ MP+  VV+WN++++GY   GD    + LF  M +   K +  +LS+++  
Sbjct: 258 LEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMV 317

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            + S  +  G+ VH   IR     D F++ SL+D+Y KCG  + A  +F  I    VV+W
Sbjct: 318 CSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSW 377

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+    +G   EA  +F+ MR+S V+P+    TS++ A ++      GE IH +I +
Sbjct: 378 NVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLIIE 437

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              +++ +V  AL+ MY + G V     VF+ +  +D VSW ++ + +  +      L +
Sbjct: 438 KKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGQAYVALEL 497

Query: 241 FYQMLLKGFKPNMCTFIVILKAC--SSLSDVG---FGKQLHAHTIKHSLDGNHVVGTSLV 295
           F +ML    KP+  TF+ IL AC  + L D G   F + ++ + I   ++      + L+
Sbjct: 498 FAEMLQSNMKPDRVTFLAILSACGHAGLVDEGCYYFNQMVNVYGIIPRVEHY----SCLI 553

Query: 296 DMYDKSGCLEDA 307
           D+  ++G L +A
Sbjct: 554 DLLGRAGRLHEA 565


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 168/498 (33%), Positives = 283/498 (56%), Gaps = 2/498 (0%)

Query: 105 ALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK-PNQFVLTSLVRATT 163
           A  VF   ++ DV+ W +++         + A + +  M E S   P++F   SL++   
Sbjct: 31  AYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 164 ETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNA 223
              + + G+ +H  + KY   SD  +   L++MY   G +     +FE + H++ V W +
Sbjct: 91  LLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTS 150

Query: 224 LFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS 283
           + S +     P++ L ++ +M   GF P+  T   ++ AC+ L D+G G +LH+H  +  
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMD 210

Query: 284 LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFR 343
           +    V+G++LV+MY K G L+ A   FD L++KD++A++A+I  Y +   +  AL+ FR
Sbjct: 211 MKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFR 270

Query: 344 KMRL-EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC 402
           ++     ++ NE T+ + ++ C+ +  L  GR +H    +T     + ++ +L+ M++KC
Sbjct: 271 EVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKC 330

Query: 403 GSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVL 462
           G ID A+ +F   + +D  SWN M+ G+  HGLG +AL  FR+M      PDEITF+ VL
Sbjct: 331 GDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVL 390

Query: 463 SACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPN 522
           +ACSH GL++EGKK F  I+ +YG+    +H+ CM+D+L RAG   E   FI    L P+
Sbjct: 391 TACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPD 450

Query: 523 ALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRAL 582
             +W ++LGAC  + N+EL E+ A  LL+LEP  +  Y+  S+I A +  WN+   VR L
Sbjct: 451 GAIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRKMWNEVKKVREL 510

Query: 583 LSSQGIKKEPSCSWIEVD 600
           ++ +GI+K P CS + +D
Sbjct: 511 MNEKGIQKTPGCSSVVID 528



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 114/443 (25%), Positives = 217/443 (48%), Gaps = 7/443 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKF-SKFSLSTVLKGFA 62
           A  VF    EL+V++WN++L  +  S   ++ +  +  M +  +    +F+  ++LKG A
Sbjct: 31  AYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
                K G+V+H   ++     D ++  +L++MY+ CG   +A  +F R+   + V W +
Sbjct: 91  LLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTS 150

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I+   +  C  EA  ++  M E    P++  + +LV A  E  D   G  +H+ I +  
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMD 210

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            +   ++G+ALV+MY + G +    +VF+ ++ +D  +W+AL   +       + L++F 
Sbjct: 211 MKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFR 270

Query: 243 QML-LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
           ++      +PN  T + ++ AC+ L D+  G+ +H +  +     +  +  SL+DM+ K 
Sbjct: 271 EVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKC 330

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G ++ A   FDS++ KDL ++ +++  +A  G    AL  FR M+   ++ +E T    L
Sbjct: 331 GDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVL 390

Query: 362 NGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-D 419
             CS    +  G +L + I    G  L       +V +  + G + +A    +   L+ D
Sbjct: 391 TACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPD 450

Query: 420 TASWNMMIGG---YVKHGLGEKA 439
            A W  M+G    Y    LGE+A
Sbjct: 451 GAIWGSMLGACRVYNNLELGEEA 473



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 179/354 (50%), Gaps = 12/354 (3%)

Query: 191 NALVSMYMENGR--VSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG 248
           N L++  +  G   V Y   VF      D ++WN++   F +   P + L+ + +ML + 
Sbjct: 14  NKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERS 73

Query: 249 FK-PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
              P+  TF  +LK C+ L +   GK LH   +K+ L  +  + T+L++MY   G L+ A
Sbjct: 74  RNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSA 133

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367
              F+ + +++   +T++I+ Y +      AL  ++KM  +G   +E T+A+ ++ C+ +
Sbjct: 134 RFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAEL 193

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
             L  G  LHS   +    +   + +ALV MYAKCG +  A  VF   + +D  +W+ +I
Sbjct: 194 KDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALI 253

Query: 428 GGYVKHGLGEKALEAFRMML-DEGYVPDEITFVVVLSACSHMGLIEEGK---KHFSSIKK 483
            GYVK+    +AL+ FR +       P+E+T + V+SAC+ +G +E G+    + +  +K
Sbjct: 254 FGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQK 313

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
            + ++        +ID+  + G     +  I ++    + + W +++   + HG
Sbjct: 314 GHSVSLN----NSLIDMFSKCGDIDAAKR-IFDSMSYKDLISWNSMVNGFALHG 362


>gi|115444451|ref|NP_001046005.1| Os02g0167200 [Oryza sativa Japonica Group]
 gi|113535536|dbj|BAF07919.1| Os02g0167200, partial [Oryza sativa Japonica Group]
          Length = 526

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 176/520 (33%), Positives = 285/520 (54%), Gaps = 35/520 (6%)

Query: 79  RLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAK 138
           R G   D+ +  SL+DMY+KC   D A+KVF  +    +V+W  +IT   Q+G C +A +
Sbjct: 1   RKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVE 60

Query: 139 IFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYM 198
           + +LM+E+  +PN+   ++L+ +  +  D                               
Sbjct: 61  VLSLMQEAGFEPNEVTYSNLLASCIKARD------------------------------- 89

Query: 199 ENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIV 258
               V     +F+ I+     +WN L S +   E     + +F +M  +  +P+  T  V
Sbjct: 90  ----VHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAV 145

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKD 318
           IL +CS L  + FG+Q+H+ +++  L  +  V + LVDMY K G +  A   F+ +  +D
Sbjct: 146 ILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERD 205

Query: 319 LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHS 378
           +  + +II+        + A   F++MR  GI   E + AS +N CS ++++ +GR +H+
Sbjct: 206 VVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHA 265

Query: 379 IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEK 438
             +K G+  +++V +AL+ MYAKCG++DDA   F    +++  +WN MI GY ++GLG+K
Sbjct: 266 QVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDK 325

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMI 498
           A+E F  ML     PD +TF+ VL+ CSH GL+++    F+S++  YGI P  +H+ C+I
Sbjct: 326 AVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLI 385

Query: 499 DILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMES 558
           D LGRAG+F E+E  I +     + ++WE LL AC  H N EL +  AE L  ++PK  S
Sbjct: 386 DALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAACVVHHNAELGKCAAEHLFRIDPKNPS 445

Query: 559 NYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
            YV  S+I A+ GR  D S VRAL+S++G+ K    SWI+
Sbjct: 446 PYVLLSNIYASLGRHGDASAVRALMSNRGVVKGRGYSWID 485



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 108/439 (24%), Positives = 199/439 (45%), Gaps = 37/439 (8%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A +VF+S+P + +VSWN L+ G+ + G   K + +   M++   + ++ + S +L  
Sbjct: 24  MDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLL-- 81

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              +  IKA  V  A A+                              F +I  P V  W
Sbjct: 82  ---ASCIKARDVHSARAM------------------------------FDKISRPSVTTW 108

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +++   Q+   Q+  ++F  M+  +V+P++  L  ++ + ++ G    G  +H+   +
Sbjct: 109 NTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVR 168

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +   +D  V + LV MY + G++     +F  +  +D V WN++ S    +    +    
Sbjct: 169 FLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDF 228

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QM   G  P   ++  ++ +CS LS +  G+Q+HA  +K   D N  VG++L+DMY K
Sbjct: 229 FKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAK 288

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G ++DA + FD++  K++ A+  +I  YAQ G  + A++ F  M     K +  T  + 
Sbjct: 289 CGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAV 348

Query: 361 LNGCSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA-VFKGSALR 418
           L GCS    +       +S+    G +      T L+    + G   + EA + K     
Sbjct: 349 LTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKD 408

Query: 419 DTASWNMMIGGYVKHGLGE 437
           D   W +++   V H   E
Sbjct: 409 DPIIWEVLLAACVVHHNAE 427



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 7/167 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A+  F +M   N+V+WN +++GYA++G G K + LF  M   E+K    +   VL G
Sbjct: 292 MDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTG 351

Query: 61  FANSGYI-KAGQVVHAMAIRLG-CALDKFLSCSLVDMYSKCGLADNALKVFYRI--KDPD 116
            ++SG + KA    ++M    G   L +  +C L+D   + G       + +++  KD D
Sbjct: 352 CSHSGLVDKAMAFFNSMENSYGIIPLAEHYTC-LIDALGRAGRFVEVEALIHKMPCKD-D 409

Query: 117 VVAWGAII-TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRAT 162
            + W  ++  C+             +L R     P+ +VL S + A+
Sbjct: 410 PIIWEVLLAACVVHHNAELGKCAAEHLFRIDPKNPSPYVLLSNIYAS 456


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 187/598 (31%), Positives = 318/598 (53%), Gaps = 1/598 (0%)

Query: 4    AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
             +++F  +    V  WN L++ YA+ G+ ++ + LF  M+ +    + ++ + VLK FA 
Sbjct: 423  GRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAA 482

Query: 64   SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
             G +K  + VH   ++LG   +  +  SL+  Y K G  ++A  +F  + +PDVV+W ++
Sbjct: 483  LGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSM 542

Query: 124  ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
            I      G      +IF  M    V+ +   L S++ A    G+   G ++H    K  F
Sbjct: 543  INGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACF 602

Query: 184  ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
              + +  N L+ MY + G ++  + VF  +     VSW +  + +         + +F +
Sbjct: 603  SEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDE 662

Query: 244  MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
            M  KG +P++ T   I+ AC+  S +  G+ +H++ IK+ +  N  V  +L++MY K G 
Sbjct: 663  MQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGS 722

Query: 304  LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
            +E+A + F  +  KD+ ++  +I  Y+Q      AL+ F  M+ +  K ++ T+A  L  
Sbjct: 723  VEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQ-FKPDDITMACVLPA 781

Query: 364  CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
            C+ +A L  GR +H   ++ G+  D+ V+ ALV MYAKCG +  A+ +F     +D  SW
Sbjct: 782  CAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISW 841

Query: 424  NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
             +MI GY  HG G +A+  F  M   G  PDE +F V+L+ACSH GL+ EG K F+S++ 
Sbjct: 842  TVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRN 901

Query: 484  IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
              G+ P ++H+AC++D+L R G  ++   FI    + P+  +W  LL  C  H +++L E
Sbjct: 902  ECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAE 961

Query: 544  KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
            K AE + ELEP     YV  +++ A   +W +   +R  +  +G K+ P CSWIEV G
Sbjct: 962  KVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGG 1019



 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 146/520 (28%), Positives = 271/520 (52%), Gaps = 9/520 (1%)

Query: 20  NALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIR 79
           NA +N + E GD +  + L    K  E   +  S  +VL+  A    ++ G+ VH++ I 
Sbjct: 340 NAKINKFCEMGDLRNAIELLTKSKSYELGLN--SYCSVLQLCAEKKSLEDGKRVHSVIIS 397

Query: 80  LGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKI 139
            G ++D+ L   LV MY  CG      K+F +I +  V  W  +++   + G  +E+  +
Sbjct: 398 NGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 457

Query: 140 FNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYME 199
           F  M++  V  N +  T +++     G  +  + +H  + K GF S+T V N+L++ Y +
Sbjct: 458 FKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFK 517

Query: 200 NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVI 259
            G V     +F+ ++  D VSWN++ +          GL IF QML+ G + ++ T + +
Sbjct: 518 FGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSV 577

Query: 260 LKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL 319
           L A +++ ++  G+ LH   +K       V   +L+DMY K G L  A   F  + +  +
Sbjct: 578 LVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTI 637

Query: 320 FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSI 379
            ++T+ I +Y + G    A+  F +M+ +G++ + +T+ S ++ C+  ++L  GR +HS 
Sbjct: 638 VSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSY 697

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
            +K G   ++ V+ AL+ MYAKCGS+++A  VF    ++D  SWN MIGGY ++ L  +A
Sbjct: 698 VIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEA 757

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFAC-M 497
           LE F + + + + PD+IT   VL AC+ +  +++G++ H   +++ Y    +  H AC +
Sbjct: 758 LELF-LDMQKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYF---SDLHVACAL 813

Query: 498 IDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           +D+  + G    +   + +     + + W  ++     HG
Sbjct: 814 VDMYAKCGLLV-LAQLLFDMIPKKDLISWTVMIAGYGMHG 852



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 137/468 (29%), Positives = 236/468 (50%), Gaps = 11/468 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  +F  + E +VVSWN+++NG   +G     + +F  M  +  +    +L +VL  
Sbjct: 521 VESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVA 580

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           +AN G +  G+ +H   ++   + +   S +L+DMYSKCG  + A +VF ++ D  +V+W
Sbjct: 581 WANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSW 640

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            + I    ++G   +A  +F+ M+   V+P+ + +TS+V A   +     G  +H+ + K
Sbjct: 641 TSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIK 700

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G  S+  V NAL++MY + G V     VF  I  +D VSWN +   +     P++ L +
Sbjct: 701 NGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALEL 760

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  M  K FKP+  T   +L AC+ L+ +  G+++H H ++     +  V  +LVDMY K
Sbjct: 761 FLDM-QKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAK 819

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L  A + FD +  KDL ++T +I  Y   G    A+  F +MR+ GI+ +E + +  
Sbjct: 820 CGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVI 879

Query: 361 LNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR- 418
           LN CS    L  G +  +S+  + G    +     +V + A+ G++  A    +   ++ 
Sbjct: 880 LNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKP 939

Query: 419 DTASWNMMIGGYVKH---GLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           DT  W +++ G   H    L EK  E    +      PD   + VVL+
Sbjct: 940 DTTIWGVLLSGCRIHHDVKLAEKVAEHIFEL-----EPDNTRYYVVLA 982



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 189/411 (45%), Gaps = 10/411 (2%)

Query: 157 SLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ 216
           S+++   E      G+ +H+VI   G   D  +G  LV MY+  G +  G ++F+ I + 
Sbjct: 374 SVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMND 433

Query: 217 DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLH 276
               WN L S +    +  + + +F +M   G   N  TF  +LK  ++L  V   K++H
Sbjct: 434 KVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVH 493

Query: 277 AHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAE 336
            + +K     N  V  SL+  Y K G +E A   FD L+  D+ ++ ++I      G + 
Sbjct: 494 GYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSG 553

Query: 337 MALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALV 396
             L+ F +M + G++ +  TL S L   + +  L+ GR LH   VK     ++  S  L+
Sbjct: 554 NGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLL 613

Query: 397 AMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI 456
            MY+KCG+++ A  VF         SW   I  YV+ GL   A+  F  M  +G  PD  
Sbjct: 614 DMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIY 673

Query: 457 TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE 516
           T   ++ AC+    +++G+   S + K  G+   +     +I++  + G   E     ++
Sbjct: 674 TVTSIVHACACSSSLDKGRDVHSYVIK-NGMGSNLPVTNALINMYAKCGSVEEARLVFSK 732

Query: 517 TKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
             +  + + W  ++G  S +    L  +  E  L+++ + +     P DI+
Sbjct: 733 IPVK-DIVSWNTMIGGYSQNS---LPNEALELFLDMQKQFK-----PDDIT 774



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 124/269 (46%), Gaps = 2/269 (0%)

Query: 207 SRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266
           S  F    H  + + NA  ++F +       + +  +   K ++  + ++  +L+ C+  
Sbjct: 325 SPSFTNTTHSVTQNQNAKINKFCEMGDLRNAIELLTKS--KSYELGLNSYCSVLQLCAEK 382

Query: 267 SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
             +  GK++H+  I + +  +  +G  LV MY   G L      FD + N  +F +  ++
Sbjct: 383 KSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLM 442

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL 386
           + YA+ G    ++  F+KM+  G+  N +T    L   + +  +   + +H   +K G  
Sbjct: 443 SEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFG 502

Query: 387 LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM 446
            +  V  +L+A Y K G ++ A  +F   +  D  SWN MI G V +G     LE F  M
Sbjct: 503 SNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQM 562

Query: 447 LDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           L  G   D  T V VL A +++G +  G+
Sbjct: 563 LILGVEVDLTTLVSVLVAWANIGNLSLGR 591


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 176/537 (32%), Positives = 297/537 (55%), Gaps = 1/537 (0%)

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
           G ++ G+  H   +++G   D+F+  SL+DMY+KCG  D+A++V+ ++   D      +I
Sbjct: 127 GCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLI 186

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
           +   + G   +A ++F  +     +PN +  ++++         + G+ +HA + K  + 
Sbjct: 187 SAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYL 246

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
           S+T VGNAL+++Y + G +     VFE++  ++ +SW A  + F  +    + L+ F  M
Sbjct: 247 SETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMM 306

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
              G +PN  TF ++L +C  + D   G+  H   IK  +     VGT+++DMY   G +
Sbjct: 307 RESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEM 366

Query: 305 EDAGVAFDSLANK-DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++A   F  +       ++ A+I  Y    + E A++ F +M  E +  NEFT ++    
Sbjct: 367 DEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKA 426

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           CS   +LA    +HS  +K+    ++ V+++L+  Y +CGS+++A  VF   +  D  SW
Sbjct: 427 CSSFPSLATTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQISDADVVSW 486

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I  Y ++G   KA+   R M++EG  P   TF+ VLSACSH GL++EG++ F S+ +
Sbjct: 487 NSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQ 546

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            Y I P   H +CM+DILGRAG+     +FI +  + P A +W  LL AC ++ N+++ E
Sbjct: 547 DYSIQPEETHCSCMVDILGRAGQLENALDFIKKLTMKPTASIWRPLLAACRYNSNLQMAE 606

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
             AEK+L+LEP   + YV  S++ A  GRW D    R L+  + I KEP CSWIEV+
Sbjct: 607 YVAEKILDLEPNDATVYVTLSNMYAEVGRWADAENQRRLMEQKEISKEPGCSWIEVN 663



 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 177/538 (32%), Positives = 287/538 (53%), Gaps = 31/538 (5%)

Query: 61   FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +A    +  G+ +HA  + +G A   + +  L+  Y++CG   NA K+F +I + ++  W
Sbjct: 813  YARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRW 872

Query: 121  GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
              +     ++G  +EA   F+ M++  ++PNQFVL S+++A     D+R GE++H VI K
Sbjct: 873  IVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILK 932

Query: 181  YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              FESD  + +AL+ MY + G V    RVF+ I  +D V  NA+ S +  +    + L +
Sbjct: 933  NSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBL 992

Query: 241  FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
              +M   G KPN+ ++  ++   +  S VG                            DK
Sbjct: 993  VQKMQQAGVKPNVVSWNTLI---AGFSQVG----------------------------DK 1021

Query: 301  SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            S   E   +   +    D+ ++T++I+ + Q          F++M  +G   +  T++S 
Sbjct: 1022 SMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSL 1081

Query: 361  LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
            L  C+ VA L +G+ +H  A+  G   D++V +ALV MYAKCG I +A+ +F     R+T
Sbjct: 1082 LPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNT 1141

Query: 421  ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
             +WN +I GY  HG   +A+E F  M +     D +TF  VL+ACSH G++E G+  F  
Sbjct: 1142 VTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFXK 1201

Query: 481  IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
            +++ Y I P ++H+ACM+D+LGRAGK +E  + I    + P+  VW  LLGAC  HGNIE
Sbjct: 1202 MQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIE 1261

Query: 541  LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
            L E  AE L ELEP+   + +  S++ A  GRW + + ++ ++  +   K P CSWIE
Sbjct: 1262 LAEVAAEHLFELEPESPGSSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWIE 1319



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 111/317 (35%), Positives = 169/317 (53%), Gaps = 4/317 (1%)

Query: 152 QFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFE 211
           Q+V ++L     E G    G   H  + K G  SD  V  +L+ MY + G V    RV++
Sbjct: 114 QYVFSALSFCGRE-GCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYD 172

Query: 212 AIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGF 271
            +   D+ + N L S +       Q  ++F Q+   G +PN  T+  +L  C ++S +  
Sbjct: 173 KMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQE 232

Query: 272 GKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQ 331
           GKQLHAH +K        VG +L+ +Y K G +E+A + F+SL  +++ ++TA I  + Q
Sbjct: 233 GKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQ 292

Query: 332 AGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFV 391
            G+ + ALK F  MR  GI+ NEFT +  L  C  V    +GR+ H+  +K G    +FV
Sbjct: 293 HGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFV 352

Query: 392 STALVAMYAKCGSIDDAEAVFK--GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDE 449
            TA++ MY+  G +D+AE  FK  G A  +  SWN +I GYV +   EKA+EAF  M+ E
Sbjct: 353 GTAIIDMYSGLGEMDEAEKQFKQMGRAASNV-SWNALIAGYVLNEKIEKAMEAFCRMVKE 411

Query: 450 GYVPDEITFVVVLSACS 466
               +E T+  +  ACS
Sbjct: 412 DVACNEFTYSNIFKACS 428



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 125/469 (26%), Positives = 230/469 (49%), Gaps = 17/469 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A RV+  M  L+  + N L++ YA +G   +   +F  + +M  + + ++ ST+L     
Sbjct: 167 AVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGT 226

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              I+ G+ +HA  +++    +  +  +L+ +YSKCG+ + A  VF  ++  ++++W A 
Sbjct: 227 ISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTAS 286

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q G  ++A K F++MRES ++PN+F  + ++ +     D   G   H  + K G 
Sbjct: 287 INGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGM 346

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDS-VSWNALFSRFQDYESPDQGLRIFY 242
            S   VG A++ MY   G +    + F+ +    S VSWNAL + +   E  ++ +  F 
Sbjct: 347 ASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFC 406

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M+ +    N  T+  I KACSS   +    Q+H+  IK +++ N  V +SL++ Y + G
Sbjct: 407 RMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKSNVESNLHVASSLIEAYTQCG 466

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            LE+A   F  +++ D+ ++ +II +Y+Q G+   A+   RKM  EG K    T  + L+
Sbjct: 467 SLENAVQVFTQISDADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLS 526

Query: 363 GCSPVATLANGRLL-------HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
            CS    +  G+         +SI  +  H       + +V +  + G +++A    K  
Sbjct: 527 ACSHSGLVQEGQEFFKSMVQDYSIQPEETH------CSCMVDILGRAGQLENALDFIKKL 580

Query: 416 ALRDTAS-WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
            ++ TAS W  ++     +   + A      +LD    P++ T  V LS
Sbjct: 581 TMKPTASIWRPLLAACRYNSNLQMAEYVAEKILD--LEPNDATVYVTLS 627



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 104/443 (23%), Positives = 201/443 (45%), Gaps = 36/443 (8%)

Query: 4    AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
            A+++F  +P  N+  W  L    A  G  ++ +  F  M+    + ++F L ++LK   +
Sbjct: 857  ARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGH 916

Query: 64   SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                + G+ +H + ++     D ++  +L+ MYSKCG  + A +VF  I D D+V   A+
Sbjct: 917  LSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAM 976

Query: 124  ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
            ++   Q G   EA  +   M+++ VKPN     +L+   ++ GD+     +  ++   G 
Sbjct: 977  VSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGV 1036

Query: 184  ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            E D +   +++S +++N                           F ++E    G   F +
Sbjct: 1037 EPDVVSWTSVISGFVQN---------------------------FHNHE----GFDAFKE 1065

Query: 244  MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
            ML +GF P+  T   +L AC++++++  GK++H + +   ++ +  V ++LVDMY K G 
Sbjct: 1066 MLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGY 1125

Query: 304  LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
            + +A + F  +  ++   + ++I  YA  G    A++ F +M     K +  T  + LN 
Sbjct: 1126 ISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNA 1185

Query: 364  CSPVATLANGRLLHSIAVKTGHLLDMFVSTA-LVAMYAKCGSIDDAEAVFKGSALR-DTA 421
            CS    +  G  L     +   +       A +V +  + G + +A  + K   +  D  
Sbjct: 1186 CSHAGMVELGESLFXKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKF 1245

Query: 422  SWNMMIGGYVKHG---LGEKALE 441
             W  ++G    HG   L E A E
Sbjct: 1246 VWGALLGACRNHGNIELAEVAAE 1268



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 141/282 (50%), Gaps = 3/282 (1%)

Query: 260 LKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL 319
           L  C     V  G++ H   +K  L  +  V TSL+DMY K G ++ A   +D + + D 
Sbjct: 120 LSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDA 179

Query: 320 FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSI 379
                +I++YA+ G    A + F ++   G + N +T ++ L  C  ++ +  G+ LH+ 
Sbjct: 180 ATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAH 239

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
            VK  +L +  V  AL+ +Y+KCG +++AE VF+    R+  SW   I G+ +HG  +KA
Sbjct: 240 VVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKA 299

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMI 498
           L+ F MM + G  P+E TF +VL++C  +    +G+  H   IKK  G+   +     +I
Sbjct: 300 LKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKK--GMASGVFVGTAII 357

Query: 499 DILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           D+    G+  E E    +     + + W  L+     +  IE
Sbjct: 358 DMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIE 399



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 152/340 (44%), Gaps = 33/340 (9%)

Query: 1    MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
            +E A RVF  + + ++V  NA+++GYA+ G   + + L   M+    K +  S +T++ G
Sbjct: 955  VEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAG 1014

Query: 61   FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            F+  G                   DK +   +  + +  G+            +PDVV+W
Sbjct: 1015 FSQVG-------------------DKSMVSEVFRLMTANGV------------EPDVVSW 1043

Query: 121  GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             ++I+   Q     E    F  M +    P+   ++SL+ A T   + R G+ IH     
Sbjct: 1044 TSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMV 1103

Query: 181  YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             G E D  V +ALV MY + G +S    +F  +  +++V+WN+L   + ++   ++ + +
Sbjct: 1104 IGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIEL 1163

Query: 241  FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTI-KHSLDGNHVVGTSLVDMYD 299
            F QM     K +  TF  +L ACS    V  G+ L      K+ ++        +VD+  
Sbjct: 1164 FNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFXKMQEKYRIEPRLEHYACMVDLLG 1223

Query: 300  KSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMA 338
            ++G L +A     ++    D F + A++ +    G  E+A
Sbjct: 1224 RAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELA 1263



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 108/234 (46%), Gaps = 9/234 (3%)

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L+ C     +  GR  H   VK G   D FV T+L+ MYAKCG +D A  V+      
Sbjct: 118 SALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSL 177

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D A+ N +I  Y ++G   +A + F  + + G  P+  T+  +L+ C  +  I+EGK+  
Sbjct: 178 DAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLH 237

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           + + K+  ++ T    A ++ +  + G   E E  + E+    N + W   +     HG 
Sbjct: 238 AHVVKMQYLSETAVGNA-LLTLYSKCGMMEEAE-IVFESLRQRNIISWTASINGFYQHG- 294

Query: 539 IELDEKDAEKLLEL--EPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKK 590
              D K A K   +  E  +E N    S + A+ G   DF   R +  +Q IKK
Sbjct: 295 ---DFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGR-MFHTQVIKK 344



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 106/512 (20%), Positives = 193/512 (37%), Gaps = 76/512 (14%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A +VF  + + +VVSWN+++  Y+++GD  K + L   M +   K +  +  TVL  
Sbjct: 468 LENAVQVFTQISDADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSA 527

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCS-LVDMYSKCGLADNALKVFYRIKDPDVVA 119
            ++SG ++ GQ      ++      +   CS +VD+  + G  +NAL             
Sbjct: 528 CSHSGLVQEGQEFFKSMVQDYSIQPEETHCSCMVDILGRAGQLENAL------------- 574

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
                                + +++ ++KP   +   L+ A     + +  E +   I 
Sbjct: 575 ---------------------DFIKKLTMKPTASIWRPLLAACRYNSNLQMAEYVAEKIL 613

Query: 180 KYGFESDTLVGNALVSMYMENGR---VSYGSRVFEA--IAHQDSVSWNALFSRFQDYESP 234
                +D  V   L +MY E GR        R+ E   I+ +   SW  + ++   + S 
Sbjct: 614 DLE-PNDATVYVTLSNMYAEVGRWADAENQRRLMEQKEISKEPGCSWIEVNNKMYKFFSH 672

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKA-CSSLSDVGFGKQ----LHAHT--------IK 281
           D+              P M      LK     + D+G+       LH  +        + 
Sbjct: 673 DKA------------HPEMPKVYEKLKQLVRQIQDIGYSPPTTTVLHPESRQPKEQLILY 720

Query: 282 HSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA---IITSYAQAGEAEMA 338
           HS       G   +        L++  V  D  +     +      I T  A A   +  
Sbjct: 721 HSEKLAVCFGLLSLPPGKPIRVLKNLRVCLDCYSTMKYISRITDRYIPTPLAAAAAMQSL 780

Query: 339 L------KCFRKMRL-EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFV 391
           +      + +R +      +S+  T A  ++  +    L  GR LH+  V  G     + 
Sbjct: 781 INRANVYRVYRNISTHRTFQSSSDTYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYF 840

Query: 392 STALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGY 451
           +  L++ Y +CG + +A  +F      +   W ++ G   + G  E+AL AF  M  EG 
Sbjct: 841 AAKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGL 900

Query: 452 VPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
            P++     +L AC H+     G+   + I K
Sbjct: 901 RPNQFVLPSILKACGHLSDRRTGENMHTVILK 932


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 185/598 (30%), Positives = 313/598 (52%), Gaps = 3/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A + F +MP  +VV+W++++  + ++G   + + +F  M     +    ++ +V +  + 
Sbjct: 154 ACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSE 213

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G ++ G+ VH   +R     +  L+ SL+ MY K G   +A ++F  +       W  +
Sbjct: 214 LGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPM 273

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+C +Q GC QEA  +F  M+E  ++PNQ  +  ++ A    G  + G S+H  + +   
Sbjct: 274 ISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAM 333

Query: 184 ESD-TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           + +   +G AL+ +Y + G +    +VFE I  +  +SWN L S F     P++ L +F 
Sbjct: 334 DPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFV 393

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           QM  +G  P+  +    L AC ++S    G Q+H + IK   + N  V  +L+DMY K G
Sbjct: 394 QMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTG-NFNDFVQNALIDMYAKCG 452

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            +  A   F+ +  K L  + ++I  ++Q G +  A+  F +M +  +K ++ T  S + 
Sbjct: 453 FVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQ 512

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            CS +  L  G+ +H   +  G   D ++ TAL  MY+KCG +  A  VF   + R   S
Sbjct: 513 ACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVS 572

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           W++MI GY  HG     +  F  ML  G  P++ITF+ +LSACSH G +EEGK +F+S+ 
Sbjct: 573 WSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMS 632

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           + +G+ P   HFACM+D+L RAG        IT      N+ +W  LL  C  H  I++ 
Sbjct: 633 E-FGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDII 691

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           +   + LL+++      Y   S+I A +G W+ F  VR+++ S+G++K P  S IE+D
Sbjct: 692 KSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEID 749



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 155/569 (27%), Positives = 282/569 (49%), Gaps = 14/569 (2%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLKG 60
           E +KRVF + P+ +   W  L+  Y   G  ++ + L+  M   ++ + S F   +VLK 
Sbjct: 50  ESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKA 109

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +  G +  G  VH   I+ G   D  +  SL+ MY +    D+A K F  +   DVVAW
Sbjct: 110 CSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAW 169

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +I+    Q G   E   +F+ M   +V+P+   + S+  A +E G  R G S+H  + +
Sbjct: 170 SSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVR 229

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              ES+  + N+L+ MY + G +    R+FE +  + +  W  + S +       + L +
Sbjct: 230 REIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNV 289

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGN-HVVGTSLVDMYD 299
           F +M     +PN  T + +L AC+ L  V  G+ +H   I+ ++D     +G +L+++Y 
Sbjct: 290 FAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYA 349

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
            +G L D    F+++  K + ++  +I+ + + G+ E AL  F +M+ +G+  + ++LAS
Sbjct: 350 DTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLAS 409

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L+ C  ++    G  +H   +KTG+  D FV  AL+ MYAKCG +  A  +F+    + 
Sbjct: 410 SLSACGTISFSQLGAQIHGYIIKTGNFND-FVQNALIDMYAKCGFVHSANKMFEKIKEKS 468

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK-KHF 478
             +WN MI G+ ++G   +A+  F  M       D++TF+ V+ ACSH+G +E+GK  H 
Sbjct: 469 LVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHH 528

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
             I  +YG+         + D+  + G+  ++ + + +     + + W  ++     HG 
Sbjct: 529 KLI--MYGLRKDSYLDTALTDMYSKCGEL-QMAHGVFDRMSERSIVSWSVMIAGYGMHGQ 585

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDIS 567
           I          + L  +M  + + P+DI+
Sbjct: 586 I-------NATISLFNQMLGSGIKPNDIT 607



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 120/467 (25%), Positives = 230/467 (49%), Gaps = 5/467 (1%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           +HA     G       S  L++ Y++ G+ +++ +VF     PD   WG +I C    G 
Sbjct: 20  LHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGF 79

Query: 133 CQEAAKIFN-LMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGN 191
            +EA  +++ ++ +   + + FV  S+++A +  GD   G  +H  + K GFESD +V  
Sbjct: 80  FEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVET 139

Query: 192 ALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKP 251
           +L+ MY E   +    + F+ +  +D V+W+++   F       +GL +F QM+ +  +P
Sbjct: 140 SLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEP 199

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF 311
           +  T + + +ACS L  +  G+ +H + ++  ++ N  +  SL+ MY K G L  A   F
Sbjct: 200 DSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLF 259

Query: 312 DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLA 371
           +++  +    +T +I+ Y Q+G  + AL  F KM+   ++ N+ T+   L  C+ +  + 
Sbjct: 260 ENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVK 319

Query: 372 NGRLLHSIAVKTGHLLDM-FVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGY 430
            GR +H   ++     ++ F+  AL+ +YA  G++ D   VF+    +   SWN +I  +
Sbjct: 320 EGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIF 379

Query: 431 VKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT 490
            ++G  E+AL  F  M  +G +PD  +    LSAC  +   + G +    I K       
Sbjct: 380 TRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDF 439

Query: 491 IKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           +++   +ID+  + G F    N + E     + + W +++   S +G
Sbjct: 440 VQN--ALIDMYAKCG-FVHSANKMFEKIKEKSLVTWNSMICGFSQNG 483



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 183/382 (47%), Gaps = 13/382 (3%)

Query: 168 QRCGES-----IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWN 222
           +RC  S     +HA +   G          L+  Y + G      RVF+     DS  W 
Sbjct: 9   RRCATSTTLTQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWG 68

Query: 223 ALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIV--ILKACSSLSDVGFGKQLHAHTI 280
            L   +      ++ + ++++M+ +  +  +  F+   +LKACS   D+  G ++H   I
Sbjct: 69  VLIKCYVWGGFFEEAVSLYHEMVYQD-QTQISNFVFPSVLKACSGFGDLSVGGKVHGRVI 127

Query: 281 KHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALK 340
           K   + + VV TSL+ MY +  CL+DA  AFD++  +D+ A+++I+ ++ Q G+A   L 
Sbjct: 128 KCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLD 187

Query: 341 CFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYA 400
            F +M  E ++ +  T+ S    CS + +L  GR +H   V+     +  ++ +L+ MY 
Sbjct: 188 MFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYG 247

Query: 401 KCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVV 460
           K G +  AE +F+    R TA W  MI  Y + G  ++AL  F  M +    P+++T V 
Sbjct: 248 KLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVG 307

Query: 461 VLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFA-CMIDILGRAGKFTEIENFITETK 518
           VL AC+ +G ++EG+  H   I++   + P +      ++++    G   +    + ET 
Sbjct: 308 VLCACARLGRVKEGRSVHGFVIRR--AMDPELDFLGPALMELYADTGNLRDCHK-VFETI 364

Query: 519 LTPNALVWENLLGACSWHGNIE 540
                L W  L+   + +G  E
Sbjct: 365 KEKTILSWNTLISIFTRNGQPE 386



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 57/126 (45%), Gaps = 1/126 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +++A  VF  M E ++VSW+ ++ GY   G     + LF  M     K +  +   +L  
Sbjct: 555 LQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSA 614

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP-DVVA 119
            +++G ++ G++        G          +VD+ S+ G  + A ++   +  P +   
Sbjct: 615 CSHAGAVEEGKLYFNSMSEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSI 674

Query: 120 WGAIIT 125
           WGA++ 
Sbjct: 675 WGALLN 680


>gi|357154827|ref|XP_003576915.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like, partial [Brachypodium distachyon]
          Length = 735

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 196/597 (32%), Positives = 306/597 (51%), Gaps = 6/597 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK--GF 61
           A+RVF  MP  +VVSWN+L++ +  +           SM       +  SL +V+   G 
Sbjct: 130 ARRVFDEMPARDVVSWNSLVSSFLANKMFDDARQALLSMMRSGVPVNVASLVSVVPACGV 189

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
              G    G  VH + ++ G      L  +LVDMY K G  + ++KVF  + + + V+W 
Sbjct: 190 EQEGGFGLG--VHGLVLKTGLDSIVNLGNALVDMYGKFGHVEASMKVFEGMPERNEVSWN 247

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           + I C    G   +   +F  M E    P    L+SL+ A  E G    G  +H    K 
Sbjct: 248 SAIGCFLNAGLYGDVLALFRGMSERGFMPGSITLSSLLPALVELGYFDLGREVHGYSIKR 307

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
             E D  V N+LV MY + G +     VFE I  ++ VSWNA+ +      +  +   + 
Sbjct: 308 AMELDIFVANSLVDMYAKFGSLEKACAVFEKIEVRNVVSWNAMIANLVQNGAESEAFGLV 367

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M   G  PN  T + +L ACS ++ +  GKQ+HA +I+  L  +  +  +L+DMY K 
Sbjct: 368 IKMQKDGECPNSITLVNLLPACSRMASLKTGKQIHAWSIRTGLMFDLFISNALIDMYAKC 427

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G L  A   FD L+ KD  +Y  +I  Y+Q+  +  +L  F+++   GI+ +  +    L
Sbjct: 428 GQLRLAQSIFD-LSEKDDVSYNTLILGYSQSPWSFESLNLFKQLSSVGIEYDAISFMGAL 486

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
             C+ +++   G+ +H + V+       F++  L+ +Y K G +D A  +F     +D A
Sbjct: 487 TACTNLSSFKQGKEIHGVLVRRLLSNHPFLANTLLGLYTKGGMLDTASKIFNRIKEKDVA 546

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SWN MI GY  HG  + A   F +M D G   D ++++ VLS CSH GL+E GKK+FS +
Sbjct: 547 SWNNMIMGYGMHGQIDAAFHLFDLMKDHGVTYDHVSYIAVLSVCSHGGLVERGKKYFSHM 606

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
                + P   H+ACM+D+LGR+G+ TE    I +     N+ VW  LLGAC  HGNIEL
Sbjct: 607 LA-QNLEPQQMHYACMVDLLGRSGQLTESVEIILDMPFHANSDVWGALLGACRIHGNIEL 665

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
            +  A+ L EL+P+    Y    ++ A  GRWN+   +R L+ S+ ++K P+ SW++
Sbjct: 666 AQYAADHLFELKPEHSGYYSVLRNMYAEAGRWNEAHKIRTLMKSRKVQKNPAYSWVQ 722



 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 142/475 (29%), Positives = 243/475 (51%), Gaps = 11/475 (2%)

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
           G  +HA A+R G   D F   +LV  Y+ CG A +A +VF  +   DVV+W ++++    
Sbjct: 95  GLELHAAALRSGHLADVFAGNTLVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFLA 154

Query: 130 QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
                +A +    M  S V  N   L S+V A     +   G  +H ++ K G +S   +
Sbjct: 155 NKMFDDARQALLSMMRSGVPVNVASLVSVVPACGVEQEGGFGLGVHGLVLKTGLDSIVNL 214

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
           GNALV MY + G V    +VFE +  ++ VSWN+    F +       L +F  M  +GF
Sbjct: 215 GNALVDMYGKFGHVEASMKVFEGMPERNEVSWNSAIGCFLNAGLYGDVLALFRGMSERGF 274

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
            P   T   +L A   L     G+++H ++IK +++ +  V  SLVDMY K G LE A  
Sbjct: 275 MPGSITLSSLLPALVELGYFDLGREVHGYSIKRAMELDIFVANSLVDMYAKFGSLEKACA 334

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369
            F+ +  +++ ++ A+I +  Q G    A     KM+ +G   N  TL + L  CS +A+
Sbjct: 335 VFEKIEVRNVVSWNAMIANLVQNGAESEAFGLVIKMQKDGECPNSITLVNLLPACSRMAS 394

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           L  G+ +H+ +++TG + D+F+S AL+ MYAKCG +  A+++F  S  +D  S+N +I G
Sbjct: 395 LKTGKQIHAWSIRTGLMFDLFISNALIDMYAKCGQLRLAQSIFDLSE-KDDVSYNTLILG 453

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGIT 488
           Y +     ++L  F+ +   G   D I+F+  L+AC+++   ++GK+ H   ++++    
Sbjct: 454 YSQSPWSFESLNLFKQLSSVGIEYDAISFMGALTACTNLSSFKQGKEIHGVLVRRLLSNH 513

Query: 489 PTIKHFACMIDILGRAGKF---TEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           P + +   ++ +  + G     ++I N I E  +      W N++     HG I+
Sbjct: 514 PFLAN--TLLGLYTKGGMLDTASKIFNRIKEKDVAS----WNNMIMGYGMHGQID 562



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 108/374 (28%), Positives = 189/374 (50%), Gaps = 1/374 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E + +VF+ MPE N VSWN+ +  +  +G    V+ LF  M +        +LS++L  
Sbjct: 228 VEASMKVFEGMPERNEVSWNSAIGCFLNAGLYGDVLALFRGMSERGFMPGSITLSSLLPA 287

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
               GY   G+ VH  +I+    LD F++ SLVDMY+K G  + A  VF +I+  +VV+W
Sbjct: 288 LVELGYFDLGREVHGYSIKRAMELDIFVANSLVDMYAKFGSLEKACAVFEKIEVRNVVSW 347

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I  L Q G   EA  +   M++    PN   L +L+ A +     + G+ IHA   +
Sbjct: 348 NAMIANLVQNGAESEAFGLVIKMQKDGECPNSITLVNLLPACSRMASLKTGKQIHAWSIR 407

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G   D  + NAL+ MY + G++     +F+ ++ +D VS+N L   +       + L +
Sbjct: 408 TGLMFDLFISNALIDMYAKCGQLRLAQSIFD-LSEKDDVSYNTLILGYSQSPWSFESLNL 466

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F Q+   G + +  +F+  L AC++LS    GK++H   ++  L  +  +  +L+ +Y K
Sbjct: 467 FKQLSSVGIEYDAISFMGALTACTNLSSFKQGKEIHGVLVRRLLSNHPFLANTLLGLYTK 526

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L+ A   F+ +  KD+ ++  +I  Y   G+ + A   F  M+  G+  +  +  + 
Sbjct: 527 GGMLDTASKIFNRIKEKDVASWNNMIMGYGMHGQIDAAFHLFDLMKDHGVTYDHVSYIAV 586

Query: 361 LNGCSPVATLANGR 374
           L+ CS    +  G+
Sbjct: 587 LSVCSHGGLVERGK 600



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 114/376 (30%), Positives = 178/376 (47%), Gaps = 5/376 (1%)

Query: 135 EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC--GESIHAVICKYGFESDTLVGNA 192
           EA  ++N M  S V P+       + A           G  +HA   + G  +D   GN 
Sbjct: 57  EALLVYNHMLRSGVSPDDRTFPFALHAAAAAAQAHPAKGLELHAAALRSGHLADVFAGNT 116

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           LV+ Y   G      RVF+ +  +D VSWN+L S F   +  D   +    M+  G   N
Sbjct: 117 LVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFLANKMFDDARQALLSMMRSGVPVN 176

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
           + + + ++ AC    + GFG  +H   +K  LD    +G +LVDMY K G +E +   F+
Sbjct: 177 VASLVSVVPACGVEQEGGFGLGVHGLVLKTGLDSIVNLGNALVDMYGKFGHVEASMKVFE 236

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
            +  ++  ++ + I  +  AG     L  FR M   G      TL+S L     +     
Sbjct: 237 GMPERNEVSWNSAIGCFLNAGLYGDVLALFRGMSERGFMPGSITLSSLLPALVELGYFDL 296

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
           GR +H  ++K    LD+FV+ +LV MYAK GS++ A AVF+   +R+  SWN MI   V+
Sbjct: 297 GREVHGYSIKRAMELDIFVANSLVDMYAKFGSLEKACAVFEKIEVRNVVSWNAMIANLVQ 356

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTI 491
           +G   +A      M  +G  P+ IT V +L ACS M  ++ GK+ H  SI+   G+   +
Sbjct: 357 NGAESEAFGLVIKMQKDGECPNSITLVNLLPACSRMASLKTGKQIHAWSIRT--GLMFDL 414

Query: 492 KHFACMIDILGRAGKF 507
                +ID+  + G+ 
Sbjct: 415 FISNALIDMYAKCGQL 430


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 200/623 (32%), Positives = 338/623 (54%), Gaps = 25/623 (4%)

Query: 1   MELAKRVF--KSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTV 57
           +E A+RVF   S+  L+++ WN+++  Y   G   +V+ LFC M  +     ++ + ++V
Sbjct: 172 LEDAQRVFDETSLLALDILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASV 231

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
           +    +SG  K G +VH   I+ G       + SLV  Y KCG   +A ++F RI   DV
Sbjct: 232 VNACGSSGEEKYGAMVHGRIIKAGLEATNLWN-SLVTFYGKCGNLQHASQLFERISRKDV 290

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMR--ESSVKPNQFVLTSLVRATTETGDQRCGESIH 175
           V+W A+I   +Q+G  + A  +F  M   E  V+PN+    SL+ A +     RCG  IH
Sbjct: 291 VSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIH 350

Query: 176 AVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD 235
           A I +   E DT + N+L++ Y +   V     +FE +  +D +SWN++ + ++  E   
Sbjct: 351 AHIFRLSLEVDTSITNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQNEQQG 410

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSD--VGF--GKQLHAHTIKHSLDG--NHV 289
           +   IF +M+L G +P+  +  +I  A S  S   + F  GK++H + ++    G  +  
Sbjct: 411 RCFDIFKRMMLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGGVSLS 470

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           V  +++ MY K   + DA   F  + N+D +++ A++  Y++  + E  L  F  +  +G
Sbjct: 471 VSNAILKMYAKFNRIADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQG 530

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLD-------MFVSTALVAMYAKC 402
              +  +L+  L  C  + +L  G+  H++  K  +  D       + ++ AL++MY+KC
Sbjct: 531 FPLDHVSLSILLTSCGRLVSLQLGKQFHAVVAKLFNGQDCPHQDSLLSINNALISMYSKC 590

Query: 403 GSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVL 462
           GSI DA  VF     +D  SW  MI G   HGL  +AL+ F  M  +G  P+++TF+ +L
Sbjct: 591 GSIKDAAQVFLKMERKDVFSWTAMITGCAHHGLAVEALQLFERMKTDGIKPNQVTFLALL 650

Query: 463 SACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTE----IENFITETK 518
            AC+H GL++EG  +F S+   YG++P+I+H+ACMID+ GR+G+F      +E  IT  K
Sbjct: 651 MACAHGGLVQEGSYYFDSMYNDYGLSPSIEHYACMIDLFGRSGQFDRAKSLVEFGITLFK 710

Query: 519 LTPNAL--VWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDF 576
              + +  +W+ LLGAC     ++L  + A K+LELEP+ E+ Y+  +++ A+ G W D 
Sbjct: 711 PYHDDILNLWKVLLGACHASKQLDLGVEAATKILELEPEDEATYILLANLYASSGLWEDA 770

Query: 577 SGVRALLSSQGIKKEPSCSWIEV 599
             VR  +  +G++KE  CSWI+ 
Sbjct: 771 IKVRKAMRDKGLRKEVGCSWIDT 793



 Score =  242 bits (617), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 154/584 (26%), Positives = 296/584 (50%), Gaps = 26/584 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+++F + P  +V+SW+AL+  Y+  G+  +   LF  M     + + FSL+++LK 
Sbjct: 71  LKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLKV 130

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF--YRIKDPDVV 118
             ++G I   + +H  +IR G  LD  +  + + MYS+CG+ ++A +VF    +   D++
Sbjct: 131 SCSTGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDIL 190

Query: 119 AWGAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
            W +II      GC  E  ++F  ++    V P +    S+V A   +G+++ G  +H  
Sbjct: 191 LWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHGR 250

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
           I K G E+  L  N+LV+ Y + G + + S++FE I+ +D VSWNA+ +  +     +  
Sbjct: 251 IIKAGLEATNL-WNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEGENA 309

Query: 238 LRIFYQMLL--KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
           L +F +ML      +PN  TF+ +L A S LS +  G+++HAH  + SL+ +  +  SL+
Sbjct: 310 LGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSITNSLI 369

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
             Y K   +  A   F+ L  +D+ ++ +++  Y Q  +       F++M L GI+ +  
Sbjct: 370 TFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEPDSH 429

Query: 356 TLASCLNGCSPVAT----LANGRLLHSIAVK--TGHLLDMFVSTALVAMYAKCGSIDDAE 409
           +L    N  S  ++       G+ +H   ++  T   + + VS A++ MYAK   I DAE
Sbjct: 430 SLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGGVSLSVSNAILKMYAKFNRIADAE 489

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
            +FKG   RD+ SWN M+ GY ++   E  L  F  +L +G+  D ++  ++L++C  + 
Sbjct: 490 KIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQGFPLDHVSLSILLTSCGRLV 549

Query: 470 LIEEGKKHFSSIKKIYGITPTIKHFA------CMIDILGRAGKFTEIENFITETKLTPNA 523
            ++ GK+  + + K++         +       +I +  + G   +      + +   + 
Sbjct: 550 SLQLGKQFHAVVAKLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQVFLKME-RKDV 608

Query: 524 LVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
             W  ++  C+ HG        A + L+L  +M+++ + P+ ++
Sbjct: 609 FSWTAMITGCAHHGL-------AVEALQLFERMKTDGIKPNQVT 645



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 174/366 (47%), Gaps = 22/366 (6%)

Query: 181 YGFESDTLVGNALVSMYM----ENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
           +GF S  +   +  S ++    E+ R+    ++F+   ++D +SW+AL + +    +  Q
Sbjct: 45  HGFSSQFIFRCSACSKFLVSQSEHERLKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQ 104

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
              +F +M+ +G +PN  +   +LK   S  ++G  +QLH  +I+     +  +  + + 
Sbjct: 105 AFGLFQKMMGEGLQPNGFSLASLLKVSCSTGEIGLCRQLHGWSIRTGFGLDSGIRAAWIT 164

Query: 297 MYDKSGCLEDAGVAFD--SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG-IKSN 353
           MY + G LEDA   FD  SL   D+  + +II +Y   G     L+ F KM   G +   
Sbjct: 165 MYSRCGVLEDAQRVFDETSLLALDILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPT 224

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
           E T AS +N C        G ++H   +K G L    +  +LV  Y KCG++  A  +F+
Sbjct: 225 ELTYASVVNACGSSGEEKYGAMVHGRIIKAG-LEATNLWNSLVTFYGKCGNLQHASQLFE 283

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMML--DEGYVPDEITFVVVLSACSHMGLI 471
             + +D  SWN MI    + G GE AL  FR ML  +    P+ +TF+ +LSA S +  +
Sbjct: 284 RISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSAL 343

Query: 472 EEGKKHFSSIKKI-----YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVW 526
             G++  + I ++       IT ++  F      +G+A +       I E  L  + + W
Sbjct: 344 RCGREIHAHIFRLSLEVDTSITNSLITFYSKCREVGKARE-------IFERLLLRDIISW 396

Query: 527 ENLLGA 532
            ++L  
Sbjct: 397 NSMLAG 402



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 130/265 (49%), Gaps = 7/265 (2%)

Query: 311 FDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATL 370
           FD+  N+D+ +++A+I +Y++ G    A   F+KM  EG++ N F+LAS L        +
Sbjct: 78  FDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLKVSCSTGEI 137

Query: 371 ANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL--RDTASWNMMIG 428
              R LH  +++TG  LD  +  A + MY++CG ++DA+ VF  ++L   D   WN +I 
Sbjct: 138 GLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDILLWNSIIA 197

Query: 429 GYVKHGLGEKALEAFRMMLDEGYV-PDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGI 487
            Y+ HG   + L  F  M+  G V P E+T+  V++AC   G  + G      I K  G+
Sbjct: 198 AYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHGRIIKA-GL 256

Query: 488 TPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAE 547
             T   +  ++   G+ G          E     + + W  ++ A    G  E       
Sbjct: 257 EAT-NLWNSLVTFYGKCGNLQHASQLF-ERISRKDVVSWNAMIAANEQRGEGENALGLFR 314

Query: 548 KLLELEPKMESNYV-FPSDISATQG 571
           ++L++EP ++ N V F S +SA  G
Sbjct: 315 RMLKVEPPVQPNRVTFLSLLSAVSG 339


>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
 gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
          Length = 869

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 198/598 (33%), Positives = 310/598 (51%), Gaps = 1/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A RVF  MPE +V SWN ++ GY ++G  ++ + L+  M     +   ++   VL+    
Sbjct: 148 AWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVRPDVYTFPCVLRSCGG 207

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
               + G+ VHA  +R G A +  +  +L+ MY+KCG    A KVF  +   D ++W A+
Sbjct: 208 VPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKVFDSMAVMDCISWNAM 267

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    + G C    ++F  M +  V+PN   +TS+  A+    D    + +H +  K GF
Sbjct: 268 IAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSDITFAKEMHGLAVKRGF 327

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            +D    N+L+ MY   G +     VF  +  +D++SW A+ S ++    PD+ L ++  
Sbjct: 328 ATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEVYAL 387

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M +    P+  T    L AC+ L  +  G +LH            VV  +L++MY KS  
Sbjct: 388 MEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFMSYVVVTNALLEMYAKSKR 447

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++ A   F  +  KD+ +++++I  +        AL  FR M L  +K N  T  + L  
Sbjct: 448 IDKAIEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHM-LADVKPNSVTFIAALAA 506

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+    L +G+ +H+  ++ G   + ++  AL+ +Y KCG    A A F     +D  SW
Sbjct: 507 CAATGALRSGKEIHAHVLRCGIAYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSW 566

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N+MI G+V HG GE AL  F  M+  G  PDE+TFV +L ACS  G++ EG + F S+  
Sbjct: 567 NIMIAGFVAHGNGETALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTD 626

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            Y I P +KH+ACM+D+L R G+ TE  NFI E  +TP+A VW  LL  C  H ++EL E
Sbjct: 627 KYSIVPNLKHYACMVDLLSRVGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGE 686

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
             A+ +LELEP     +V   D+ A  G W+  + VR  +  +G+  +  CSW+EV G
Sbjct: 687 LAAKYVLELEPNDAGYHVLLCDLYADAGIWDKLARVRKTMREKGLDHDSGCSWVEVKG 744



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 116/389 (29%), Positives = 204/389 (52%), Gaps = 1/389 (0%)

Query: 88  LSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESS 147
           L  +++ M  + G   +A +VF ++ + DV +W  ++    + G  +EA  +++ M  + 
Sbjct: 131 LGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAG 190

Query: 148 VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGS 207
           V+P+ +    ++R+     D R G  +HA + ++GF  +  V NAL++MY + G V    
Sbjct: 191 VRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAAR 250

Query: 208 RVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLS 267
           +VF+++A  D +SWNA+ +   +    + GL +F  ML    +PN+ T   +  A   LS
Sbjct: 251 KVFDSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLS 310

Query: 268 DVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIIT 327
           D+ F K++H   +K     +     SL+ MY   G +  A   F  +  +D  ++TA+I+
Sbjct: 311 DITFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMIS 370

Query: 328 SYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL 387
            Y + G  + AL+ +  M +  +  ++ T+AS L  C+ + +L  G  LH +A   G + 
Sbjct: 371 GYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFMS 430

Query: 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML 447
            + V+ AL+ MYAK   ID A  VFK    +D  SW+ MI G+  +    +AL  FR ML
Sbjct: 431 YVVVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHML 490

Query: 448 DEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            +   P+ +TF+  L+AC+  G +  GK+
Sbjct: 491 AD-VKPNSVTFIAALAACAATGALRSGKE 518



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 155/310 (50%), Gaps = 6/310 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A+ VF  M   + +SW A+++GY ++G   K + ++  M+         ++++ L  
Sbjct: 347 MGQARTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAA 406

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A  G +  G  +H +A   G      ++ +L++MY+K    D A++VF  + + DVV+W
Sbjct: 407 CACLGSLDVGVKLHELAESKGFMSYVVVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSW 466

Query: 121 GAIIT--CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            ++I   C + +    EA   F  M  + VKPN     + + A   TG  R G+ IHA +
Sbjct: 467 SSMIAGFCFNHRNF--EALYYFRHML-ADVKPNSVTFIAALAACAATGALRSGKEIHAHV 523

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            + G   +  + NAL+ +Y++ G+  Y    F A   +D VSWN + + F  + + +  L
Sbjct: 524 LRCGIAYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGNGETAL 583

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL-HAHTIKHSLDGNHVVGTSLVDM 297
             F QM+  G  P+  TF+ +L ACS    V  G +L H+ T K+S+  N      +VD+
Sbjct: 584 SFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTDKYSIVPNLKHYACMVDL 643

Query: 298 YDKSGCLEDA 307
             + G L +A
Sbjct: 644 LSRVGQLTEA 653


>gi|242057857|ref|XP_002458074.1| hypothetical protein SORBIDRAFT_03g026520 [Sorghum bicolor]
 gi|241930049|gb|EES03194.1| hypothetical protein SORBIDRAFT_03g026520 [Sorghum bicolor]
          Length = 963

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 203/602 (33%), Positives = 309/602 (51%), Gaps = 43/602 (7%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKD---MEKKFSKFSLSTVLKG 60
           AK +F S+ E N V+ N L+ G  +    ++ + +F   ++   +        LS + + 
Sbjct: 328 AKDIFLSLKEKNAVTLNGLIVGLVKQHCSEEAVKIFVGTRNTIVVNADTYVVLLSAIAEY 387

Query: 61  FANSGYIKAGQVVHAMAIRLGCA-LDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
                 ++ G+  H   +R G   L   +S  LV+MY+KCG  D+A K+F  ++  D ++
Sbjct: 388 SIPEEGLRKGKEAHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIDSASKIFQLMEATDRIS 447

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  II+ LDQ G    +A                                 G+ +H    
Sbjct: 448 WNTIISALDQNGLKLLSA---------------------------------GQQVHCDAV 474

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP-DQGL 238
           K+G + DT V N LV MY E G +S   +VF ++A  D VSWN++       ++P  + +
Sbjct: 475 KWGLDLDTSVSNVLVKMYGECGAMSDCWKVFNSMADHDEVSWNSMMGVMASSQAPISETV 534

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            +F  M+  G  PN  TF+ +L A S LS +  GKQ HA  +KH +  ++VV  +L+  Y
Sbjct: 535 EVFNNMMRGGLIPNKVTFVNLLAALSPLSVLELGKQFHAAVLKHGVMDDNVVDNALISCY 594

Query: 299 DKSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
            KSG +      F +++  +D  ++ ++I+ Y   G  + A+ C   M   G   +  T 
Sbjct: 595 AKSGDMNSCEHLFSNMSGRRDAVSWNSMISGYIYNGYLQEAMDCVWLMLHSGQIMDCCTF 654

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           +  LN C+ VA L  G  +H+  +++    D+ V +ALV MY+KCG +D A  +F     
Sbjct: 655 SIILNACASVAALERGMEMHAFGIRSHLESDVVVESALVDMYSKCGRVDYASKLFNSMTQ 714

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           R+  SWN MI GY +HGLG KALE F  ML     PD +TFV VLSACSH GL+E G ++
Sbjct: 715 RNEFSWNSMISGYARHGLGRKALETFEEMLRSRESPDHVTFVSVLSACSHAGLVERGLEY 774

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F  +   +GI P I+H++C+ID+LGRAGK  +I+ +I    + PNAL+W  +L AC    
Sbjct: 775 FEMMPD-HGILPQIEHYSCVIDLLGRAGKIDKIKEYIQRMPMKPNALIWRTVLVACRQSK 833

Query: 538 N---IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSC 594
           +   IEL  +    LLE+EP+   NYV  S+  A  G W D +  RA +    +KKE   
Sbjct: 834 DGSKIELGREALRVLLEIEPQNPVNYVLASNFHAATGMWEDTAKARAGMRQATVKKEAGR 893

Query: 595 SW 596
           SW
Sbjct: 894 SW 895



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 155/587 (26%), Positives = 277/587 (47%), Gaps = 67/587 (11%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           LA+RVF   P  ++++WNAL++ YA+ GD   V+  F    DM+++ S+  L      F 
Sbjct: 221 LAQRVFDGTPIRDLITWNALMSVYAKKGD---VVSTFTLFMDMQREDSRIQLRPTEHTFG 277

Query: 63  N--------SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
           +        SG       V    ++ GC+ D ++  +LV  +++ GL D A  +F  +K+
Sbjct: 278 SLITATSLSSGSSAVLDQVFVSVLKSGCSSDLYVGSALVSAFARHGLIDEAKDIFLSLKE 337

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRES-SVKPNQFV--LTSLVRATTETGDQRCG 171
            + V    +I  L +Q C +EA KIF   R +  V  + +V  L+++   +      R G
Sbjct: 338 KNAVTLNGLIVGLVKQHCSEEAVKIFVGTRNTIVVNADTYVVLLSAIAEYSIPEEGLRKG 397

Query: 172 ESIHAVICKYGFESDTL-VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
           +  H  + + G     + V N LV+MY + G +   S++F+ +   D +SWN + S    
Sbjct: 398 KEAHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIDSASKIFQLMEATDRISWNTIISALD- 456

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
                 GL++                            +  G+Q+H   +K  LD +  V
Sbjct: 457 ----QNGLKL----------------------------LSAGQQVHCDAVKWGLDLDTSV 484

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI--ITSYAQAGEAEMALKCFRKMRLE 348
              LV MY + G + D    F+S+A+ D  ++ ++  + + +QA  +E  ++ F  M   
Sbjct: 485 SNVLVKMYGECGAMSDCWKVFNSMADHDEVSWNSMMGVMASSQAPISE-TVEVFNNMMRG 543

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
           G+  N+ T  + L   SP++ L  G+  H+  +K G + D  V  AL++ YAK G ++  
Sbjct: 544 GLIPNKVTFVNLLAALSPLSVLELGKQFHAAVLKHGVMDDNVVDNALISCYAKSGDMNSC 603

Query: 409 EAVFKG-SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
           E +F   S  RD  SWN MI GY+ +G  ++A++   +ML  G + D  TF ++L+AC+ 
Sbjct: 604 EHLFSNMSGRRDAVSWNSMISGYIYNGYLQEAMDCVWLMLHSGQIMDCCTFSIILNACAS 663

Query: 468 MGLIEEG-KKHFSSIKKIYGITPTIKHFACMIDILGRAGKF---TEIENFITETKLTPNA 523
           +  +E G + H   I+        ++  + ++D+  + G+    +++ N +T+     N 
Sbjct: 664 VAALERGMEMHAFGIRSHLESDVVVE--SALVDMYSKCGRVDYASKLFNSMTQR----NE 717

Query: 524 LVWENLLGACSWHGNIELDEKDAEKLLELEPKMES--NYVFPSDISA 568
             W +++   + HG   L  K  E   E+    ES  +  F S +SA
Sbjct: 718 FSWNSMISGYARHG---LGRKALETFEEMLRSRESPDHVTFVSVLSA 761



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 140/555 (25%), Positives = 255/555 (45%), Gaps = 53/555 (9%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEK--KFSKFSLSTVLKG 60
           A RVF  MP+ N VSW  LL+GY   G  ++   +F +M +++E   + + F+  T+L+ 
Sbjct: 114 ASRVFDEMPQRNAVSWTCLLSGYVLQGITEEAFRVFRAMLREVEPGCRPTSFTFGTLLRA 173

Query: 61  FANSGYIKAG--QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNAL--KVFYRIKDPD 116
             + G  + G    VH +  +   A +  +  +L+ MY  C +    L  +VF      D
Sbjct: 174 CQDGGPDRLGFATQVHGLLSKTEYASNTTVCNALISMYGSCTVGPPILAQRVFDGTPIRD 233

Query: 117 VVAWGAIITCLDQQGCCQEAAKIF-NLMRESS---VKPNQFVLTSLVRATT-ETGDQRCG 171
           ++ W A+++   ++G       +F ++ RE S   ++P +    SL+ AT+  +G     
Sbjct: 234 LITWNALMSVYAKKGDVVSTFTLFMDMQREDSRIQLRPTEHTFGSLITATSLSSGSSAVL 293

Query: 172 ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY 231
           + +   + K G  SD  VG+ALVS +  +G +     +F ++  +++V+ N L       
Sbjct: 294 DQVFVSVLKSGCSSDLYVGSALVSAFARHGLIDEAKDIFLSLKEKNAVTLNGLIVGLVKQ 353

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACS--SLSDVGF--GKQLHAHTIKHSL-DG 286
              ++ ++IF          N  T++V+L A +  S+ + G   GK+ H H ++  L D 
Sbjct: 354 HCSEEAVKIFVGT-RNTIVVNADTYVVLLSAIAEYSIPEEGLRKGKEAHGHMLRTGLTDL 412

Query: 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR 346
              V   LV+MY K G ++ A   F  +   D  ++  II++  Q G             
Sbjct: 413 KIAVSNGLVNMYAKCGAIDSASKIFQLMEATDRISWNTIISALDQNG------------- 459

Query: 347 LEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSID 406
                               +  L+ G+ +H  AVK G  LD  VS  LV MY +CG++ 
Sbjct: 460 --------------------LKLLSAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMS 499

Query: 407 DAEAVFKGSALRDTASWNMMIGGYV-KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC 465
           D   VF   A  D  SWN M+G          + +E F  M+  G +P+++TFV +L+A 
Sbjct: 500 DCWKVFNSMADHDEVSWNSMMGVMASSQAPISETVEVFNNMMRGGLIPNKVTFVNLLAAL 559

Query: 466 SHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV 525
           S + ++E GK+  +++ K +G+         +I    ++G     E+  +      +A+ 
Sbjct: 560 SPLSVLELGKQFHAAVLK-HGVMDDNVVDNALISCYAKSGDMNSCEHLFSNMSGRRDAVS 618

Query: 526 WENLLGACSWHGNIE 540
           W +++    ++G ++
Sbjct: 619 WNSMISGYIYNGYLQ 633



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 141/545 (25%), Positives = 239/545 (43%), Gaps = 41/545 (7%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           +H   I+ G   D FLS  LV+ Y+K      A +VF  +   + V+W  +++    QG 
Sbjct: 82  LHVELIKRGLNHDLFLSNHLVNSYAKGARLAAASRVFDEMPQRNAVSWTCLLSGYVLQGI 141

Query: 133 CQEAAKIFNLMR---ESSVKPNQFVLTSLVRATTETGDQRCG--ESIHAVICKYGFESDT 187
            +EA ++F  M    E   +P  F   +L+RA  + G  R G    +H ++ K  + S+T
Sbjct: 142 TEEAFRVFRAMLREVEPGCRPTSFTFGTLLRACQDGGPDRLGFATQVHGLLSKTEYASNT 201

Query: 188 LVGNALVSMY--MENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
            V NAL+SMY     G      RVF+    +D ++WNAL S +           +F  M 
Sbjct: 202 TVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVVSTFTLFMDMQ 261

Query: 246 LKG----FKPNMCTFIVILKACS-SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
            +      +P   TF  ++ A S S        Q+    +K     +  VG++LV  + +
Sbjct: 262 REDSRIQLRPTEHTFGSLITATSLSSGSSAVLDQVFVSVLKSGCSSDLYVGSALVSAFAR 321

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +++A   F SL  K+      +I    +   +E A+K F   R   I  N  T    
Sbjct: 322 HGLIDEAKDIFLSLKEKNAVTLNGLIVGLVKQHCSEEAVKIFVGTR-NTIVVNADTYVVL 380

Query: 361 LNGCS----PVATLANGRLLHSIAVKTGHL-LDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
           L+  +    P   L  G+  H   ++TG   L + VS  LV MYAKCG+ID A  +F+  
Sbjct: 381 LSAIAEYSIPEEGLRKGKEAHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIDSASKIFQLM 440

Query: 416 ALRDTASWNMMIGGYVKHGLGEKALEAFRMM----LDEGYVPDEITFVVVLSACSHMGLI 471
              D  SWN +I    ++GL  K L A + +    +  G   D     V++      G +
Sbjct: 441 EATDRISWNTIISALDQNGL--KLLSAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAM 498

Query: 472 EEGKKHFSSIKKIYGITPTIKHFACMIDILGRA----GKFTEIENFITETKLTPNALVWE 527
            +  K F+S+     ++     +  M+ ++  +     +  E+ N +    L PN + + 
Sbjct: 499 SDCWKVFNSMADHDEVS-----WNSMMGVMASSQAPISETVEVFNNMMRGGLIPNKVTFV 553

Query: 528 NLLGACSWHGNIELDEKDAEKLLE--------LEPKMESNYVFPSDISATQGRWNDFSGV 579
           NLL A S    +EL ++    +L+        ++  + S Y    D+++ +  +++ SG 
Sbjct: 554 NLLAALSPLSVLELGKQFHAAVLKHGVMDDNVVDNALISCYAKSGDMNSCEHLFSNMSGR 613

Query: 580 RALLS 584
           R  +S
Sbjct: 614 RDAVS 618



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 156/321 (48%), Gaps = 21/321 (6%)

Query: 172 ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY 231
           E++H  + K G   D  + N LV+ Y +  R++  SRVF+ +  +++VSW  L S +   
Sbjct: 80  ENLHVELIKRGLNHDLFLSNHLVNSYAKGARLAAASRVFDEMPQRNAVSWTCLLSGYVLQ 139

Query: 232 ESPDQGLRIFYQMLLK---GFKPNMCTFIVILKACSS--LSDVGFGKQLHAHTIKHSLDG 286
              ++  R+F  ML +   G +P   TF  +L+AC       +GF  Q+H    K     
Sbjct: 140 GITEEAFRVFRAMLREVEPGCRPTSFTFGTLLRACQDGGPDRLGFATQVHGLLSKTEYAS 199

Query: 287 NHVVGTSLVDMYDKS--GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRK 344
           N  V  +L+ MY     G    A   FD    +DL  + A+++ YA+ G+       F  
Sbjct: 200 NTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVVSTFTLFMD 259

Query: 345 MRLEG----IKSNEFTLASCLNGCSPVATLANGR--LLHSIAV---KTGHLLDMFVSTAL 395
           M+ E     ++  E T  S +   S    L++G   +L  + V   K+G   D++V +AL
Sbjct: 260 MQREDSRIQLRPTEHTFGSLITATS----LSSGSSAVLDQVFVSVLKSGCSSDLYVGSAL 315

Query: 396 VAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE 455
           V+ +A+ G ID+A+ +F     ++  + N +I G VK    E+A++ F +      V + 
Sbjct: 316 VSAFARHGLIDEAKDIFLSLKEKNAVTLNGLIVGLVKQHCSEEAVKIF-VGTRNTIVVNA 374

Query: 456 ITFVVVLSACSHMGLIEEGKK 476
            T+VV+LSA +   + EEG +
Sbjct: 375 DTYVVLLSAIAEYSIPEEGLR 395



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 1/167 (0%)

Query: 1   MELAKRVFKSMP-ELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           M   + +F +M    + VSWN++++GY  +G  Q+ M     M    +     + S +L 
Sbjct: 600 MNSCEHLFSNMSGRRDAVSWNSMISGYIYNGYLQEAMDCVWLMLHSGQIMDCCTFSIILN 659

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             A+   ++ G  +HA  IR     D  +  +LVDMYSKCG  D A K+F  +   +  +
Sbjct: 660 ACASVAALERGMEMHAFGIRSHLESDVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFS 719

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
           W ++I+   + G  ++A + F  M  S   P+     S++ A +  G
Sbjct: 720 WNSMISGYARHGLGRKALETFEEMLRSRESPDHVTFVSVLSACSHAG 766



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 15/183 (8%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A ++F SM + N  SWN++++GYA  G G+K +  F  M    +     +  +VL  
Sbjct: 702 VDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKALETFEEMLRSRESPDHVTFVSVLSA 761

Query: 61  FANSGYIKAGQVVHAMAIRLGCALD-KFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            +++G ++ G     M    G     +  SC ++D+  + G  D   +   R+   P+ +
Sbjct: 762 CSHAGLVERGLEYFEMMPDHGILPQIEHYSC-VIDLLGRAGKIDKIKEYIQRMPMKPNAL 820

Query: 119 AWGAIITCLDQQG------CCQEAAKIFNLMRESSVKPNQFVLTSLVRATT----ETGDQ 168
            W  ++    Q          +EA ++  L+      P  +VL S   A T    +T   
Sbjct: 821 IWRTVLVACRQSKDGSKIELGREALRV--LLEIEPQNPVNYVLASNFHAATGMWEDTAKA 878

Query: 169 RCG 171
           R G
Sbjct: 879 RAG 881


>gi|125561353|gb|EAZ06801.1| hypothetical protein OsI_29045 [Oryza sativa Indica Group]
          Length = 696

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 196/602 (32%), Positives = 324/602 (53%), Gaps = 7/602 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+RVF  +P  + VSWNALL  +A SG   +   L  +M       + F+L + L+  A 
Sbjct: 46  ARRVFDEVPRRDEVSWNALLAAHAASGAHPEAWRLLRAMHAQGLASNTFALGSALRSAAV 105

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +     G  + ++A++ G A + F + +L+D+Y+KCG   +A +VF  + + + V+W A+
Sbjct: 106 ARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNAL 165

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    + G    A ++F  M    + P++    SL+ A  E         +H  I KYG 
Sbjct: 166 IAGYTESGDMASALELFLEMEREGLVPDEATFASLLTAV-EGPSCFLMHQLHGKIVKYGS 224

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAH-QDSVSWNALFSRFQDYESPDQGLRIFY 242
                V NA ++ Y + G +    R+F+ I   +D +SWNA+   +      D+ ++ F 
Sbjct: 225 ALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFV 284

Query: 243 QMLLK-GFKPNMCTFIVILKACSSLS-DVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           +M+ + G  P+M +F  I+ +CS    D   G+ +H   IK +L+G   V  +L+ MY +
Sbjct: 285 RMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTR 344

Query: 301 --SGCL-EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
               C+ EDA   F+SL  KD  ++ +++T Y+Q G +  ALK FR M  E ++++E+  
Sbjct: 345 YNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAF 404

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           ++ L   S +A L  G+ +H + + +G   + FVS++L+ MY+K G IDDA   F+ +  
Sbjct: 405 SAALRSSSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADK 464

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
             +  WN MI GY +HG  E     F  ML      D ITFV ++++CSH GL++EG + 
Sbjct: 465 SSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEI 524

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
            ++++  YG+   ++H+AC +D+ GRAG+  + +  I      P+A+VW  LLGAC  HG
Sbjct: 525 LNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLLGACRIHG 584

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           N+EL    A  L   EP+  S YV  S + +  G W+D + V+ ++  +G+ K P  S I
Sbjct: 585 NVELASDVASHLFVAEPRQHSTYVLLSSMYSGLGMWSDRATVQRVMKKRGLSKVPGWSLI 644

Query: 598 EV 599
           EV
Sbjct: 645 EV 646



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 103/227 (45%), Gaps = 2/227 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A + F S+   + VSWN++L GY++ G     +  F  M     +  +++ S  L+ 
Sbjct: 351 MEDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRS 410

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    ++ G+ +H + I  G A + F+S SL+ MYSK G+ D+A K F        V W
Sbjct: 411 SSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPW 470

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG-ESIHAVIC 179
            A+I    Q G  +    +FN M +     +      L+ + +  G    G E ++ +  
Sbjct: 471 NAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMET 530

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-DSVSWNALF 225
           KYG           V +Y   G++    ++ +++  + D++ W  L 
Sbjct: 531 KYGVPLRMEHYACGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLL 577


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 186/598 (31%), Positives = 318/598 (53%), Gaps = 1/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
            +++F  +    V  WN L++ YA+ G+ ++ + LF  M+ +    + ++ + VLK FA 
Sbjct: 148 GRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAA 207

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G +K  + VH   ++LG   +  +  SL+  Y K G  ++A  +F  + +PDVV+W ++
Sbjct: 208 LGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSM 267

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I      G      +IF  M    V+ +   L S++ A    G+   G ++H    K  F
Sbjct: 268 INGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACF 327

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             + +  N L+ MY + G ++  + VF  +     VSW ++ + +         + +F +
Sbjct: 328 SEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDE 387

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  KG +P++ T   I+ AC+  S +  G+ +H++ IK+ +  N  V  +L++MY K G 
Sbjct: 388 MQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGS 447

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +E+A + F  +  KD+ ++  +I  Y+Q      AL+ F  M+ +  K ++ T+A  L  
Sbjct: 448 VEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQ-FKPDDITMACVLPA 506

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +A L  GR +H   ++ G+  D+ V+ ALV MYAKCG +  A+ +F     +D  SW
Sbjct: 507 CAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISW 566

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
            +MI GY  HG G +A+  F  M   G  PDE +F  +L+ACSH GL+ EG K F+S++ 
Sbjct: 567 TVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRN 626

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
             G+ P ++H+AC++D+L R G  ++   FI    + P+  +W  LL  C  H +++L E
Sbjct: 627 ECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAE 686

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           K AE + ELEP     YV  +++ A   +W +   +R  +  +G K+ P CSWIEV G
Sbjct: 687 KVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGG 744



 Score =  244 bits (623), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 152/543 (27%), Positives = 282/543 (51%), Gaps = 11/543 (2%)

Query: 20  NALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIR 79
           NA +N + E GD +  + L    K  E   +  S  +VL+  A    ++ G+ VH++ I 
Sbjct: 65  NAKINKFCEMGDLRNAIELLTKSKSYELGLN--SYCSVLQLCAEKKSLEDGKRVHSVIIS 122

Query: 80  LGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKI 139
            G ++D+ L   LV MY  CG      K+F +I +  V  W  +++   + G  +E+  +
Sbjct: 123 NGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 182

Query: 140 FNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYME 199
           F  M++  V  N +  T +++     G  +  + +H  + K GF S+T V N+L++ Y +
Sbjct: 183 FKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFK 242

Query: 200 NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVI 259
            G V     +F+ ++  D VSWN++ +          GL IF QML+ G + ++ T + +
Sbjct: 243 FGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSV 302

Query: 260 LKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL 319
           L AC+++ ++  G+ LH   +K       V   +L+DMY K G L  A   F  + +  +
Sbjct: 303 LVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTI 362

Query: 320 FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSI 379
            ++T+II +Y + G    A+  F +M+ +G++ + +T+ S ++ C+  ++L  GR +HS 
Sbjct: 363 VSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSY 422

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
            +K G   ++ V+ AL+ MYAKCGS+++A  VF    ++D  SWN MIGGY ++ L  +A
Sbjct: 423 VIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEA 482

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFAC-M 497
           LE F + + + + PD+IT   VL AC+ +  +++G++ H   +++ Y    +  H AC +
Sbjct: 483 LELF-LDMQKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYF---SDLHVACAL 538

Query: 498 IDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH--GNIELDEKDAEKLLELEPK 555
           +D+  + G    +   + +     + + W  ++     H  GN  +   +  ++  +EP 
Sbjct: 539 VDMYAKCGLLV-LAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPD 597

Query: 556 MES 558
             S
Sbjct: 598 ESS 600



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 138/468 (29%), Positives = 237/468 (50%), Gaps = 11/468 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  +F  + E +VVSWN+++NG   +G     + +F  M  +  +    +L +VL  
Sbjct: 246 VESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVA 305

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            AN G +  G+ +H   ++   + +   S +L+DMYSKCG  + A +VF ++ D  +V+W
Sbjct: 306 CANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSW 365

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +II    ++G   +A  +F+ M+   V+P+ + +TS+V A   +     G  +H+ + K
Sbjct: 366 TSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIK 425

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G  S+  V NAL++MY + G V     VF  I  +D VSWN +   +     P++ L +
Sbjct: 426 NGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALEL 485

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  M  K FKP+  T   +L AC+ L+ +  G+++H H ++     +  V  +LVDMY K
Sbjct: 486 FLDM-QKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAK 544

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L  A + FD +  KDL ++T +I  Y   G    A+  F +MR+ GI+ +E + ++ 
Sbjct: 545 CGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAI 604

Query: 361 LNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR- 418
           LN CS    L  G +  +S+  + G    +     +V + A+ G++  A    +   ++ 
Sbjct: 605 LNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKP 664

Query: 419 DTASWNMMIGGYVKH---GLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           DT  W +++ G   H    L EK  E    +      PD   + VVL+
Sbjct: 665 DTTIWGVLLSGCRIHHDVKLAEKVAEHIFEL-----EPDNTRYYVVLA 707



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 125/269 (46%), Gaps = 2/269 (0%)

Query: 207 SRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266
           S  F    H  + + NA  ++F +       + +  +   K ++  + ++  +L+ C+  
Sbjct: 50  SPSFTNTTHSVTQNQNAKINKFCEMGDLRNAIELLTKS--KSYELGLNSYCSVLQLCAEK 107

Query: 267 SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
             +  GK++H+  I + +  +  +G  LV MY   G L      FD + N  +F +  ++
Sbjct: 108 KSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLM 167

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL 386
           + YA+ G    ++  F+KM+  G+  N +T    L   + +  +   + +H   +K G  
Sbjct: 168 SEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFG 227

Query: 387 LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM 446
            +  V  +L+A Y K G ++ A  +F   +  D  SWN MI G V +G     LE F  M
Sbjct: 228 SNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQM 287

Query: 447 LDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           L  G   D  T V VL AC+++G +  G+
Sbjct: 288 LILGVEVDLTTLVSVLVACANIGNLSLGR 316


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 209/635 (32%), Positives = 316/635 (49%), Gaps = 51/635 (8%)

Query: 15  NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVH 74
            V  WN L+      G  + V+ L+  M+ +  +   ++   VLK        + G  VH
Sbjct: 109 TVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVH 168

Query: 75  AMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP---DVVAWGAIITCLDQQG 131
           A+    G   + F+   LV MY +CG  +NA +VF  +++    D+V+W +I+    Q G
Sbjct: 169 AVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGG 228

Query: 132 CCQEAAKIFNLMRES-SVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVG 190
               A K+F  M E   ++P+   L +++ A    G    G+ +H    + G   D  VG
Sbjct: 229 DSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVG 288

Query: 191 NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS------RFQD-------------- 230
           NA+V MY + G +   ++VFE +  +D VSWNA+ +      RF D              
Sbjct: 289 NAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIE 348

Query: 231 ------------YESPDQG---LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL 275
                       Y     G   L +F QMLL G +PN+ T + +L  C+S   +  GK+ 
Sbjct: 349 LNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKET 408

Query: 276 HAHTIKH--SLDGNH-----VVGTSLVDMYDKSGCLEDAGVAFDSLANKD--LFAYTAII 326
           H H IK   +LD N      +V  +L+DMY K    + A   FD +  KD  +  +T +I
Sbjct: 409 HCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLI 468

Query: 327 TSYAQAGEAEMALKCFRKMRLEG--IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
              AQ GEA  AL+ F +M      +  N FT++  L  C+ +  L  GR +H+  ++  
Sbjct: 469 GGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNR 528

Query: 385 HLLDM-FVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF 443
               M FV+  L+ MY+K G +D A  VF     R+  SW  ++ GY  HG GE+AL+ F
Sbjct: 529 FESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIF 588

Query: 444 RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGR 503
             M     VPD +TFVVVL ACSH G++++G  +F+ + K +G+ P  +H+ACM+D+L R
Sbjct: 589 YEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSR 648

Query: 504 AGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFP 563
           AG+  E    I    + P   VW  LL AC  + N+EL E  A +LLELE   + +Y   
Sbjct: 649 AGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLL 708

Query: 564 SDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           S+I A    W D + +R L+ + GIKK P CSW++
Sbjct: 709 SNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQ 743



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 136/494 (27%), Positives = 222/494 (44%), Gaps = 56/494 (11%)

Query: 2   ELAKRVFKSMPELNV---VSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTV 57
           E A++VF  M E  V   VSWN+++  Y + GD  + M +F  M +D+  +    SL  V
Sbjct: 197 ENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNV 256

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
           L   A+ G    G+ VH  A+R G   D F+  ++VDMY+KCG+ + A KVF R+K  DV
Sbjct: 257 LPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDV 316

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSV----------------------------- 148
           V+W A++T   Q G   +A  +F  +RE  +                             
Sbjct: 317 VSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQ 376

Query: 149 ------KPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE-------SDTLVGNALVS 195
                 +PN   L SL+      G    G+  H    K+           D +V NAL+ 
Sbjct: 377 MLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALID 436

Query: 196 MYMENGRVSYGSRVFEAIAHQDS--VSWNALFSRFQDYESPDQGLRIFYQMLLKG--FKP 251
           MY +         +F+ I  +D   V+W  L      +   ++ L +F QML       P
Sbjct: 437 MYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMP 496

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGTSLVDMYDKSGCLEDAGVA 310
           N  T    L AC+ L  + FG+Q+HA+ +++  +   + V   L+DMY KSG ++ A V 
Sbjct: 497 NAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVV 556

Query: 311 FDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATL 370
           FD++  ++  ++T+++T Y   G  E AL+ F +M+   +  +  T    L  CS    +
Sbjct: 557 FDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMV 616

Query: 371 ANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT-ASWNMMIG 428
             G    + +    G +        +V + ++ G +D+A  + +G  ++ T A W  ++ 
Sbjct: 617 DQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLS 676

Query: 429 G---YVKHGLGEKA 439
               Y    LGE A
Sbjct: 677 ACRVYANVELGEYA 690



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 2/127 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+ VF +M + N VSW +L+ GY   G G++ + +F  M+ +       +   VL  
Sbjct: 550 VDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYA 609

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            ++SG +  G    + M    G          +VD+ S+ G  D A+++   +   P   
Sbjct: 610 CSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPA 669

Query: 119 AWGAIIT 125
            W A+++
Sbjct: 670 VWVALLS 676


>gi|356502497|ref|XP_003520055.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 852

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 195/601 (32%), Positives = 313/601 (52%), Gaps = 43/601 (7%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F      + ++W++L++GY   G   +   LF  M+   +K S+++L ++L+G + 
Sbjct: 165 ARELFNGFSSRSSITWSSLISGYCRFGRQAEAFDLFKRMRLEGQKPSQYTLGSILRGCSA 224

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI--KDPDVVAWG 121
            G I+ G+++H   ++ G   + ++   LVDMY+KC     A  +F  +     + V W 
Sbjct: 225 LGLIQKGEMIHGYVVKNGFESNVYVVAGLVDMYAKCRHISEAEILFKGLAFNKGNHVLWT 284

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           A++T   Q G   +A + F  M    V+ NQF   S++ A +       GE +H  I + 
Sbjct: 285 AMVTGYAQNGDDHKAIEFFRYMHTEGVESNQFTFPSILTACSSVSAHCFGEQVHGCIVRN 344

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           GF  +  V +ALV MY + G +    RV E +   D VSWN++      +   ++ + +F
Sbjct: 345 GFGCNAYVQSALVDMYAKCGDLGSAKRVLENMEDDDVVSWNSMIVGCVRHGFEEEAILLF 404

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGF--GKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
            +M  +  K +  TF  +L  C     VG   GK +H   IK   +   +V  +LVDMY 
Sbjct: 405 KKMHARNMKIDHYTFPSVLNCCI----VGRIDGKSVHCLVIKTGFENYKLVSNALVDMYA 460

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K+  L  A   F+ +  KD+ ++T+++T Y Q G  E +LK F  MR+ G+  ++F +AS
Sbjct: 461 KTEDLNCAYAVFEKMFEKDVISWTSLVTGYTQNGSHEESLKTFCDMRISGVSPDQFIVAS 520

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L+ C+ +  L  G+ +HS  +K G    + V+ +LV MYAKCG +DDA+A+F    +RD
Sbjct: 521 ILSACAELTLLEFGKQVHSDFIKLGLRSSLSVNNSLVTMYAKCGCLDDADAIFVSMHVRD 580

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             +W  +I GY ++G G  +L                                   K+F 
Sbjct: 581 VITWTALIVGYARNGKGRDSL-----------------------------------KYFQ 605

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
            +KKIYGI P  +H+ACMID+ GR GK  E +  + +  + P+A VW+ LL AC  HGN+
Sbjct: 606 QMKKIYGIEPGPEHYACMIDLFGRLGKLDEAKEILNQMDVKPDATVWKALLAACRVHGNL 665

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           EL E+ A  L ELEP     YV  S++     +W+D + +R L+ S+GI KEP CSWIE+
Sbjct: 666 ELGERAATNLFELEPMNAMPYVMLSNMYLAARKWDDAAKIRRLMKSKGITKEPGCSWIEM 725

Query: 600 D 600
           +
Sbjct: 726 N 726



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 140/460 (30%), Positives = 231/460 (50%), Gaps = 15/460 (3%)

Query: 28  ESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIK-AGQVVHAMAIRLGCALDK 86
           ++G  Q VMH   ++ D  +  S F  + +L G + SG I  A ++   M  R     D+
Sbjct: 97  DTGVQQVVMH---NIADSYQ--SIFHSNQLLNGLSKSGQIDDARELFDKMLQR-----DE 146

Query: 87  FLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRES 146
           +   ++V  Y+  G    A ++F        + W ++I+   + G   EA  +F  MR  
Sbjct: 147 YTWNTMVSGYANVGRLVEARELFNGFSSRSSITWSSLISGYCRFGRQAEAFDLFKRMRLE 206

Query: 147 SVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYG 206
             KP+Q+ L S++R  +  G  + GE IH  + K GFES+  V   LV MY +   +S  
Sbjct: 207 GQKPSQYTLGSILRGCSALGLIQKGEMIHGYVVKNGFESNVYVVAGLVDMYAKCRHISEA 266

Query: 207 SRVFEAIAHQ--DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACS 264
             +F+ +A    + V W A+ + +       + +  F  M  +G + N  TF  IL ACS
Sbjct: 267 EILFKGLAFNKGNHVLWTAMVTGYAQNGDDHKAIEFFRYMHTEGVESNQFTFPSILTACS 326

Query: 265 SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA 324
           S+S   FG+Q+H   +++    N  V ++LVDMY K G L  A    +++ + D+ ++ +
Sbjct: 327 SVSAHCFGEQVHGCIVRNGFGCNAYVQSALVDMYAKCGDLGSAKRVLENMEDDDVVSWNS 386

Query: 325 IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           +I    + G  E A+  F+KM    +K + +T  S LN C  +    +G+ +H + +KTG
Sbjct: 387 MIVGCVRHGFEEEAILLFKKMHARNMKIDHYTFPSVLNCC--IVGRIDGKSVHCLVIKTG 444

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
                 VS ALV MYAK   ++ A AVF+    +D  SW  ++ GY ++G  E++L+ F 
Sbjct: 445 FENYKLVSNALVDMYAKTEDLNCAYAVFEKMFEKDVISWTSLVTGYTQNGSHEESLKTFC 504

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
            M   G  PD+     +LSAC+ + L+E GK+  S   K+
Sbjct: 505 DMRISGVSPDQFIVASILSACAELTLLEFGKQVHSDFIKL 544



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 161/346 (46%), Gaps = 46/346 (13%)

Query: 258 VILKACSSLS----DVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
           V+L A  SL+    D G  +Q+  H I  S   +      L++   KSG ++DA   FD 
Sbjct: 83  VLLSASPSLNEDSDDTGV-QQVVMHNIADSYQ-SIFHSNQLLNGLSKSGQIDDARELFDK 140

Query: 314 LANKDLFAYTAIITSYAQAG--------------------------------EAEMALKC 341
           +  +D + +  +++ YA  G                                +AE A   
Sbjct: 141 MLQRDEYTWNTMVSGYANVGRLVEARELFNGFSSRSSITWSSLISGYCRFGRQAE-AFDL 199

Query: 342 FRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAK 401
           F++MRLEG K +++TL S L GCS +  +  G ++H   VK G   +++V   LV MYAK
Sbjct: 200 FKRMRLEGQKPSQYTLGSILRGCSALGLIQKGEMIHGYVVKNGFESNVYVVAGLVDMYAK 259

Query: 402 CGSIDDAEAVFKGSALR--DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFV 459
           C  I +AE +FKG A    +   W  M+ GY ++G   KA+E FR M  EG   ++ TF 
Sbjct: 260 CRHISEAEILFKGLAFNKGNHVLWTAMVTGYAQNGDDHKAIEFFRYMHTEGVESNQFTFP 319

Query: 460 VVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK 518
            +L+ACS +     G++ H   ++  +G    ++  + ++D+  + G     +  + E  
Sbjct: 320 SILTACSSVSAHCFGEQVHGCIVRNGFGCNAYVQ--SALVDMYAKCGDLGSAKR-VLENM 376

Query: 519 LTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564
              + + W +++  C  HG  E      +K+     K++ +Y FPS
Sbjct: 377 EDDDVVSWNSMIVGCVRHGFEEEAILLFKKMHARNMKID-HYTFPS 421



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 80/145 (55%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A  VF+ M E +V+SW +L+ GY ++G  ++ +  FC M+       +F ++++L  
Sbjct: 465 LNCAYAVFEKMFEKDVISWTSLVTGYTQNGSHEESLKTFCDMRISGVSPDQFIVASILSA 524

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    ++ G+ VH+  I+LG      ++ SLV MY+KCG  D+A  +F  +   DV+ W
Sbjct: 525 CAELTLLEFGKQVHSDFIKLGLRSSLSVNNSLVTMYAKCGCLDDADAIFVSMHVRDVITW 584

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRE 145
            A+I    + G  +++ K F  M++
Sbjct: 585 TALIVGYARNGKGRDSLKYFQQMKK 609


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 183/599 (30%), Positives = 307/599 (51%), Gaps = 2/599 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AK +F  +       WN ++ G+   G     +  +  M        K++   V+K    
Sbjct: 100 AKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGG 159

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G+VVH     +G  LD F+  SL+  YS+ G   +A  +F R+   D V W  +
Sbjct: 160 LNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVM 219

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    + G    A  +F  MR +   PN      ++           G  +H ++   G 
Sbjct: 220 LNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGL 279

Query: 184 ESDTLVGN--ALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           E D+ V N  AL+ +Y +   V    ++F+     D V   A+ S +      +  L IF
Sbjct: 280 EMDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIF 339

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
             +L +  + N  T   +L AC+ L+ +  GK+LH H +K+   G+  VG++++DMY K 
Sbjct: 340 RWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKC 399

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G L+ A   F  +++KD   + ++ITS +Q G+ E A+  FR+M + G K +  ++++ L
Sbjct: 400 GRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAAL 459

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           + C+ +  L  G+ +H+  ++     D+F  +AL+ MY+KCG++D A  VF     ++  
Sbjct: 460 SACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEV 519

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SWN +I  Y  HG  + +L  F  ML +G  PD +TF+ ++SAC H G ++EG  +F  +
Sbjct: 520 SWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCM 579

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
            +  GI   ++H+ACM+D+ GRAG+  E    I     +P+A VW  LLGAC  HGN+EL
Sbjct: 580 TEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVEL 639

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
            E  +  L +L+P+    YV  S++ A  G+W     +R+L+  +G++K P CSWI+V+
Sbjct: 640 AEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGCSWIDVN 698



 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 132/489 (26%), Positives = 227/489 (46%), Gaps = 4/489 (0%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
           L ++L+   +   +  G+  HA  +  G   +  L   L+ MY  CG   +A  +FY+++
Sbjct: 49  LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR 108

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES 173
                 W  +I      G    A   +  M      P+++    +++A         G  
Sbjct: 109 LWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRV 168

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           +H  I   GFE D  VG++L+  Y ENG +     +F+ +  +D V WN + + +     
Sbjct: 169 VHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGD 228

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
            D    +F +M      PN  TF  +L  C+S   + FG QLH   +   L+ +  V  +
Sbjct: 229 WDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANT 288

Query: 294 --LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
             L+D+Y K   +E A   FD     D+   TA+I+ Y   G    AL+ FR +  E ++
Sbjct: 289 FALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMR 348

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
           +N  TLAS L  C+ +A L  G+ LH   +K GH    +V +A++ MYAKCG +D A   
Sbjct: 349 ANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQT 408

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F G + +D   WN MI    ++G  E+A++ FR M   G   D ++    LSAC+++  +
Sbjct: 409 FIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPAL 468

Query: 472 EEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLG 531
             GK+  + + +       +   + +ID+  + G   ++   + +T    N + W +++ 
Sbjct: 469 HYGKEIHAFMMR-GAFRSDLFAESALIDMYSKCGNL-DLACRVFDTMEEKNEVSWNSIIA 526

Query: 532 ACSWHGNIE 540
           A   HG ++
Sbjct: 527 AYGNHGRLK 535



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 189/405 (46%), Gaps = 11/405 (2%)

Query: 140 FNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYME 199
           F++  + S+ P    L S+++  T+      G   HA +   G   + ++G  L+ MY+ 
Sbjct: 37  FSIHNDDSLAPQ---LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVL 93

Query: 200 NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVI 259
            G       +F  +    S  WN +   F      D  L  +++ML  G  P+  TF  +
Sbjct: 94  CGAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYV 153

Query: 260 LKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL 319
           +KAC  L+ V  G+ +H        + +  VG+SL+  Y ++GC+ DA   FD + +KD 
Sbjct: 154 IKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDG 213

Query: 320 FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSI 379
             +  ++  Y + G+ + A   F +MR      N  T A  L+ C+    +  G  LH +
Sbjct: 214 VLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGL 273

Query: 380 AVKTGHLLDMFVST--ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGE 437
            V +G  +D  V+   AL+ +Y KC  ++ A  +F      D      MI GYV +G+  
Sbjct: 274 VVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNN 333

Query: 438 KALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFAC 496
            ALE FR +L E    + +T   VL AC+ +  +  GK+ H   +K  +G +  +   + 
Sbjct: 334 NALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVG--SA 391

Query: 497 MIDILGRAGKFT-EIENFITETKLTPNALVWENLLGACSWHGNIE 540
           ++D+  + G+     + FI  +    +A+ W +++ +CS +G  E
Sbjct: 392 IMDMYAKCGRLDLAHQTFIGISD--KDAVCWNSMITSCSQNGKPE 434



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 164/340 (48%), Gaps = 2/340 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E+A+++F     +++V   A+++GY  +G     + +F  +     + +  +L++VL  
Sbjct: 301 VEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPA 360

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    +  G+ +H   ++ G     ++  +++DMY+KCG  D A + F  I D D V W
Sbjct: 361 CAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCW 420

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++IT   Q G  +EA  +F  M  +  K +   +++ + A         G+ IHA + +
Sbjct: 421 NSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMR 480

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             F SD    +AL+ MY + G +    RVF+ +  ++ VSWN++ + + ++      L +
Sbjct: 481 GAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNL 540

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFG-KQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           F+ ML  G +P+  TF+ I+ AC     V  G       T +  +         +VD++ 
Sbjct: 541 FHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFG 600

Query: 300 KSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMA 338
           ++G L +A    +S+  + D   +  ++ +    G  E+A
Sbjct: 601 RAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELA 640


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 184/596 (30%), Positives = 319/596 (53%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A RVF+ +     V ++ +L GYA++   +  +  +  M+  E     +  + +L+    
Sbjct: 95  AARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGE 154

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +  ++ G+ +H M I  G   + F   ++V++Y+KC   ++A K+F R+   D+V+W  +
Sbjct: 155 NLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTV 214

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    Q G  + A ++   M+E+  KP+   L S++ A  +    R G SIH    + GF
Sbjct: 215 VAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGF 274

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E    V  A++  Y + G V     VF+ ++ ++ VSWN +   +      ++    F +
Sbjct: 275 EYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLK 334

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           ML +G +P   + +  L AC++L D+  G+ +H    +  +  +  V  SL+ MY K   
Sbjct: 335 MLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKR 394

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++ A   F +L +K +  + A+I  YAQ G    AL  F +M+   IK + FTL S +  
Sbjct: 395 VDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITA 454

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
            + ++     + +H +A++T    ++FV TAL+  +AKCG+I  A  +F     R   +W
Sbjct: 455 LADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITW 514

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N MI GY  +G G +AL+ F  M +    P+EITF+ V++ACSH GL+EEG  +F S+K+
Sbjct: 515 NAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKE 574

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            YG+ PT+ H+  M+D+LGRAG+  +   FI +  + P   V   +LGAC  H N+EL E
Sbjct: 575 NYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELGE 634

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           K A++L +L+P     +V  +++ A+   W+  + VR  +  +GI+K P CS +E+
Sbjct: 635 KTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGIQKTPGCSLVEL 690



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 131/541 (24%), Positives = 245/541 (45%), Gaps = 47/541 (8%)

Query: 76  MAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQE 135
           + I+ G   +      L+ ++ K      A +VF  ++    V +  ++    +    ++
Sbjct: 66  LIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRD 125

Query: 136 AAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVS 195
           A + +  MR   V P  +  T L++ + E  D R G  IH ++   GF+S+     A+V+
Sbjct: 126 AVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVN 185

Query: 196 MYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCT 255
           +Y +  ++    ++FE +  +D VSWN + + +       + +++  QM   G KP+  T
Sbjct: 186 LYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSIT 245

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
            + +L A + L  +  G+ +H +  +   +    V T+++D Y K G +  A + F  ++
Sbjct: 246 LVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMS 305

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRL 375
           ++++ ++  +I  YAQ GE+E A   F KM  EG++    ++   L+ C+ +  L  GR 
Sbjct: 306 SRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRY 365

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           +H +  +     D+ V  +L++MY+KC  +D A +VF     +   +WN MI GY ++G 
Sbjct: 366 VHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGC 425

Query: 436 GEKALEAFRMMLDEGYVPDEITFVVVLSACSHM--------------------------- 468
             +AL  F  M      PD  T V V++A + +                           
Sbjct: 426 VNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTA 485

Query: 469 --------GLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK-- 518
                   G I+  +K F  +++ + IT     +  MID  G  G   E  +   E +  
Sbjct: 486 LIDTHAKCGAIQTARKLFDLMQERHVIT-----WNAMIDGYGTNGHGREALDLFNEMQNG 540

Query: 519 -LTPNALVWENLLGACSWHGNIELDEKDAEKLLE---LEPKMESNYVFPSDISATQGRWN 574
            + PN + + +++ ACS  G +E      E + E   LEP M+ +Y    D+    GR +
Sbjct: 541 SVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMD-HYGAMVDLLGRAGRLD 599

Query: 575 D 575
           D
Sbjct: 600 D 600



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 125/456 (27%), Positives = 217/456 (47%), Gaps = 6/456 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A ++F+ MP+ ++VSWN ++ GYA++G  ++ + +   M++  +K    +L +VL  
Sbjct: 193 IEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPA 252

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+   ++ G+ +H  A R G      ++ +++D Y KCG   +A  VF  +   +VV+W
Sbjct: 253 VADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSW 312

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I    Q G  +EA   F  M +  V+P    +   + A    GD   G  +H ++ +
Sbjct: 313 NTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDE 372

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
                D  V N+L+SMY +  RV   + VF  + H+  V+WNA+   +      ++ L +
Sbjct: 373 KKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNL 432

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M     KP+  T + ++ A + LS     K +H   I+  +D N  V T+L+D + K
Sbjct: 433 FCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAK 492

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G ++ A   FD +  + +  + A+I  Y   G    AL  F +M+   +K NE T  S 
Sbjct: 493 CGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSV 552

Query: 361 LNGCSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
           +  CS    +  G     S+    G    M    A+V +  + G +DDA    +   ++ 
Sbjct: 553 IAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKP 612

Query: 420 TAS-WNMMIGGYVKHG---LGEK-ALEAFRMMLDEG 450
             +    M+G    H    LGEK A E F +  D+G
Sbjct: 613 GITVLGAMLGACRIHKNVELGEKTADELFDLDPDDG 648


>gi|297604972|ref|NP_001056430.2| Os05g0581300 [Oryza sativa Japonica Group]
 gi|255676606|dbj|BAF18344.2| Os05g0581300 [Oryza sativa Japonica Group]
          Length = 704

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 201/612 (32%), Positives = 316/612 (51%), Gaps = 14/612 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSK---FSLSTVLK- 59
           A R+F  MP  + V++  LL G+A +GD    M LF  ++      +    F LS V K 
Sbjct: 20  AHRLFDGMPRRDEVAYATLLAGHAAAGDFPGAMALFSRLRASSPPLAPADPFVLSLVFKS 79

Query: 60  --GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
               A++ ++     +HA A+R       F++ +L D+Y+K G    ALKVF  +   +V
Sbjct: 80  CAAAADARFLPHAASLHAFAVRSSAVSSVFVATALADVYAKAGCLGLALKVFDEMPHKNV 139

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           V+W  ++  L + G   EA + F+ MR S V  + +   + + A  + G    G  +HA 
Sbjct: 140 VSWTTLVASLTRAGRRHEALRRFSEMRASGVHCDSYAYAAALTACADAGLLSRGREVHAF 199

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
             K G +S   V N L ++Y     V         +  +D  +W  + S +       + 
Sbjct: 200 CAKLGLDSTPYVANTLATLYARCSDVDRALAAVSRMGTRDVAAWTTVISAYVQTGRAKEA 259

Query: 238 LRIFYQMLLK----GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
           +  F +ML +       PN  T+  ++ AC+ ++ V  G+QLHA   +        V  S
Sbjct: 260 IEAFVRMLREESSVAASPNEYTYAAVIAACADIAWVCLGEQLHAQAARKGFACARSVANS 319

Query: 294 LVDMYDKS-GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG--I 350
           LV +Y ++ GCL  A   F     KD+ +++AII+ YAQ G AE A   FR+MR      
Sbjct: 320 LVTLYTRAAGCLSAADAVFRESVVKDVVSWSAIISGYAQEGLAEDAFALFREMRHHSGCP 379

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
           + NEFTLAS L+ C+  A+L  GR LH++AV  G      + +AL+ MY K GS+ DA+ 
Sbjct: 380 RPNEFTLASLLSVCATAASLDAGRQLHTLAVAAGLEHHAMIRSALIDMYGKSGSMLDADI 439

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           VF      D  SW  MI GY +HG  +KALE F+ M   G  PD +TF+ VL+AC H G 
Sbjct: 440 VFSHRVKDDVVSWTAMIVGYAEHGHSKKALELFQEMCHVGLKPDHVTFIGVLNACCHAGE 499

Query: 471 IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTP-NALVWENL 529
           +E G ++ + + +IYG+ P  +H+ C++D+LGRAG+  E E  I +      + +VW +L
Sbjct: 500 VELGLRYLNEMNQIYGLYPAKEHYGCVVDLLGRAGRINEAEELIGKIAANERDGVVWTSL 559

Query: 530 LGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589
           L AC+  G  E  +K AE+ +E EP     +V  +++ A++G+W++ +  R ++  +G+ 
Sbjct: 560 LRACAARGEEETGKKAAERAMEAEPWGAGAHVAMANLYASKGQWHEAAQERHMMKQKGVV 619

Query: 590 KEPSCSWIEVDG 601
           K    S I V G
Sbjct: 620 KGAGWSSITVGG 631



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 125/452 (27%), Positives = 213/452 (47%), Gaps = 13/452 (2%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           LA +VF  MP  NVVSW  L+     +G   + +  F  M+        ++ +  L   A
Sbjct: 126 LALKVFDEMPHKNVVSWTTLVASLTRAGRRHEALRRFSEMRASGVHCDSYAYAAALTACA 185

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           ++G +  G+ VHA   +LG     +++ +L  +Y++C   D AL    R+   DV AW  
Sbjct: 186 DAGLLSRGREVHAFCAKLGLDSTPYVANTLATLYARCSDVDRALAAVSRMGTRDVAAWTT 245

Query: 123 IITCLDQQGCCQEAAKIF-NLMRESS---VKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +I+   Q G  +EA + F  ++RE S     PN++   +++ A  +      GE +HA  
Sbjct: 246 VISAYVQTGRAKEAIEAFVRMLREESSVAASPNEYTYAAVIAACADIAWVCLGEQLHAQA 305

Query: 179 CKYGFESDTLVGNALVSMYME-NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
            + GF     V N+LV++Y    G +S    VF     +D VSW+A+ S +      +  
Sbjct: 306 ARKGFACARSVANSLVTLYTRAAGCLSAADAVFRESVVKDVVSWSAIISGYAQEGLAEDA 365

Query: 238 LRIFYQMLLKG--FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
             +F +M       +PN  T   +L  C++ + +  G+QLH   +   L+ + ++ ++L+
Sbjct: 366 FALFREMRHHSGCPRPNEFTLASLLSVCATAASLDAGRQLHTLAVAAGLEHHAMIRSALI 425

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
           DMY KSG + DA + F      D+ ++TA+I  YA+ G ++ AL+ F++M   G+K +  
Sbjct: 426 DMYGKSGSMLDADIVFSHRVKDDVVSWTAMIVGYAEHGHSKKALELFQEMCHVGLKPDHV 485

Query: 356 TLASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
           T    LN C     +  G R L+ +    G          +V +  + G I++AE +   
Sbjct: 486 TFIGVLNACCHAGEVELGLRYLNEMNQIYGLYPAKEHYGCVVDLLGRAGRINEAEELIGK 545

Query: 415 SAL--RDTASWNMMIGGYVKHG---LGEKALE 441
            A   RD   W  ++      G    G+KA E
Sbjct: 546 IAANERDGVVWTSLLRACAARGEEETGKKAAE 577



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 113/231 (48%), Gaps = 7/231 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDME--KKFSKFSLSTVL 58
           +  A  VF+     +VVSW+A+++GYA+ G  +    LF  M+      + ++F+L+++L
Sbjct: 331 LSAADAVFRESVVKDVVSWSAIISGYAQEGLAEDAFALFREMRHHSGCPRPNEFTLASLL 390

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF-YRIKDPDV 117
              A +  + AG+ +H +A+  G      +  +L+DMY K G   +A  VF +R+KD DV
Sbjct: 391 SVCATAASLDAGRQLHTLAVAAGLEHHAMIRSALIDMYGKSGSMLDADIVFSHRVKD-DV 449

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG-ESIHA 176
           V+W A+I    + G  ++A ++F  M    +KP+      ++ A    G+   G   ++ 
Sbjct: 450 VSWTAMIVGYAEHGHSKKALELFQEMCHVGLKPDHVTFIGVLNACCHAGEVELGLRYLNE 509

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA--HQDSVSWNALF 225
           +   YG          +V +    GR++    +   IA   +D V W +L 
Sbjct: 510 MNQIYGLYPAKEHYGCVVDLLGRAGRINEAEELIGKIAANERDGVVWTSLL 560



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 6/183 (3%)

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG---IKSNEFT 356
           +S  L DA   FD +  +D  AY  ++  +A AG+   A+  F ++R        ++ F 
Sbjct: 13  RSSRLADAHRLFDGMPRRDEVAYATLLAGHAAAGDFPGAMALFSRLRASSPPLAPADPFV 72

Query: 357 LASCLNGCSPVAT---LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
           L+     C+  A    L +   LH+ AV++  +  +FV+TAL  +YAK G +  A  VF 
Sbjct: 73  LSLVFKSCAAAADARFLPHAASLHAFAVRSSAVSSVFVATALADVYAKAGCLGLALKVFD 132

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
               ++  SW  ++    + G   +AL  F  M   G   D   +   L+AC+  GL+  
Sbjct: 133 EMPHKNVVSWTTLVASLTRAGRRHEALRRFSEMRASGVHCDSYAYAAALTACADAGLLSR 192

Query: 474 GKK 476
           G++
Sbjct: 193 GRE 195


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 1058

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 189/630 (30%), Positives = 321/630 (50%), Gaps = 40/630 (6%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A+ +F  MPE N VSW  +++GY    D  +   +F  M     +  +     VL  
Sbjct: 311 MSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSA 370

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 ++    +  +AI+ G   D  +  ++++ Y++ G  D A+  F  + + +  +W
Sbjct: 371 ITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSW 430

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I    Q G   +A +++  + E +V       T+++ A  + G  +    I   I  
Sbjct: 431 TTMIAAFAQCGRLDDAIQLYERVPEQTVATK----TAMMTAYAQVGRIQKARLIFDEI-- 484

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
                + +  NA+++ Y +NG +     +F+ +  ++S SW A+ + F   E   + L +
Sbjct: 485 --LNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALEL 542

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
             ++   G  P+  +F   L AC+++ DV  G+ +H+  IK     N  V   L+ MY K
Sbjct: 543 LIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAK 602

Query: 301 SG-------------------------------CLEDAGVAFDSLANKDLFAYTAIITSY 329
            G                                L+DA V F+ +  +D+ ++TAII++Y
Sbjct: 603 CGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAY 662

Query: 330 AQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDM 389
            QAG  E+AL  F  M   GIK N+ T+ S L+ C  +  +  G   H++  K G    +
Sbjct: 663 VQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFL 722

Query: 390 FVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDE 449
           FV  +L+ MY KCG  +D   VF+     D  +WN ++ G  ++GLG++A++ F  M  E
Sbjct: 723 FVGNSLITMYFKCG-YEDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVE 781

Query: 450 GYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTE 509
           G +PD+++F+ VL ACSH GL++EG  HF+S+ + YGI P + H+ CM+D+LGRAG  +E
Sbjct: 782 GILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSE 841

Query: 510 IENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISAT 569
            E  I    + P++++WE LLGAC  H N+EL ++ AE+L ++     + YV  S++ A+
Sbjct: 842 AEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPKSATYVLLSNLFAS 901

Query: 570 QGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           QG W+  + +R L+  QG+ KEP  SWI+V
Sbjct: 902 QGMWDKVAEIRKLMKDQGLTKEPGISWIQV 931



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 154/642 (23%), Positives = 289/642 (45%), Gaps = 114/642 (17%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+RVF  M + +VVSWN+++NGY+++G   +   LF +   + K    +++  +L G
Sbjct: 187 VEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAF--VGKNIRTWTI--LLTG 242

Query: 61  FANSGYI-KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           +A  G I +A +V  +M  R   + +  +S      Y + G   NA K+F  + + +V +
Sbjct: 243 YAKEGRIEEAREVFESMTERNVVSWNAMISG-----YVQNGDLKNARKLFDEMPEKNVAS 297

Query: 120 WGAIITCLDQQGCCQ-----EAAKIFNLMRESS--------------------------- 147
           W +++T     G C      EA ++F+ M E +                           
Sbjct: 298 WNSVVT-----GYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKM 352

Query: 148 ----VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRV 203
                +P+Q +   ++ A T   D     S+  +  K G+E D +VG+A+++ Y  NG +
Sbjct: 353 CRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSL 412

Query: 204 SYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKAC 263
                 FE +  ++  SW  + + F      D  ++++ ++     +  + T   ++ A 
Sbjct: 413 DLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVP----EQTVATKTAMMTAY 468

Query: 264 SSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYT 323
           + +  +   + +        L+ N V   +++  Y ++G L++A   F  +  K+  ++ 
Sbjct: 469 AQVGRIQKARLI----FDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWA 524

Query: 324 AIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKT 383
           A+I  + Q  E+  AL+   ++   G   ++ +  S L+ C+ +  +  GR++HS+A+KT
Sbjct: 525 AMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKT 584

Query: 384 GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG-------------- 429
           G   + +V   L++MYAKCG+++D   VF+   ++DT SWN +I G              
Sbjct: 585 GCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVF 644

Query: 430 -----------------YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE 472
                            YV+ G GE AL+ F  ML  G  P+++T   +LSAC ++G I+
Sbjct: 645 EKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIK 704

Query: 473 EGKKHFSSIKKI-------YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV 525
            G++  + I K+        G +    +F C     G    F   E       +T     
Sbjct: 705 LGEQFHALIFKLGFDTFLFVGNSLITMYFKC-----GYEDGFCVFEEMPEHDLIT----- 754

Query: 526 WENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           W  +L  C+ +G      K+A K+ E   +ME   + P  +S
Sbjct: 755 WNAVLVGCAQNGL----GKEAIKIFE---QMEVEGILPDQMS 789



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 4/95 (4%)

Query: 389 MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
           +F     +    + G +++A  VF     RD  SWN MI GY ++G  ++A    R++ D
Sbjct: 171 LFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEA----RLLFD 226

Query: 449 EGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
                +  T+ ++L+  +  G IEE ++ F S+ +
Sbjct: 227 AFVGKNIRTWTILLTGYAKEGRIEEAREVFESMTE 261


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 195/608 (32%), Positives = 321/608 (52%), Gaps = 15/608 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AK  F ++ + N+ SW  L+  +A SG  ++ +     M+    +    +  T L    +
Sbjct: 98  AKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGD 157

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI-KDPDVVAWGA 122
              ++ G  +H M +     +D  +S +L++MY KCG   +A +VF ++ +  +V++W  
Sbjct: 158 PESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSI 217

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +       G   EA + F  M    +K  +  + +++ A +     + G  IH+ I   G
Sbjct: 218 MAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALSG 277

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAI--AHQDSVSWNALFSRFQDYESPDQGLRI 240
           FES+ LV NA+++MY   G V    +VF+A+  A +D VSWN + S +   +     +++
Sbjct: 278 FESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQL 337

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           + +M L+  K    T++ +L ACSS  DVG G+ LH   +   L+ N +VG +LV MY K
Sbjct: 338 YQRMQLRADK---VTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAK 394

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEG------IKSN 353
            G   +A   FD +  + + ++T II++Y +      A   F++M  LE       +K +
Sbjct: 395 CGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPD 454

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
                + LN C+ V+ L  G+++   A   G   D  V TA+V +Y KCG I++   +F 
Sbjct: 455 ALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFD 514

Query: 414 GSALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE 472
           G   R D   WN MI  Y + G   +AL+ F  M  EG  PD  +FV +L ACSH GL +
Sbjct: 515 GVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLED 574

Query: 473 EGKKHFSSIKKIY-GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLG 531
           +GK +F+S+   Y  +T TI+HF C+ D+LGR G+  E E F+ +  + P+A+ W +LL 
Sbjct: 575 QGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLA 634

Query: 532 ACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
           AC  H +++  ++ A KLL LEP+  + YV  S+I A   +W+  + VR  ++ QG+KKE
Sbjct: 635 ACRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKE 694

Query: 592 PSCSWIEV 599
              S IE+
Sbjct: 695 RGVSTIEI 702



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 134/538 (24%), Positives = 255/538 (47%), Gaps = 25/538 (4%)

Query: 44  DMEKKFSKFSLST---VLKGFANSGYIKAGQVVHAMAIRLGCAL-DKFLSCSLVDMYSKC 99
           D+EK+  +   +T   +L+  A +  +  G+ +H++A++      +  L   +V MY+ C
Sbjct: 33  DLEKQAVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHC 92

Query: 100 GLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLV 159
               +A   F  ++  ++ +W  ++      G  +E  +    MR+  V+P+     + +
Sbjct: 93  DSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITAL 152

Query: 160 RATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH-QDS 218
            +  +    R G  IH ++     E D  V NAL++MY + G +S+  RVF  +   ++ 
Sbjct: 153 GSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNV 212

Query: 219 VSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAH 278
           +SW+ +      + +  + LR F  MLL G K      + IL ACSS + V  G+ +H+ 
Sbjct: 213 ISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSC 272

Query: 279 TIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL--ANKDLFAYTAIITSYAQAGEAE 336
                 +   +V  +++ MY + G +E+A   FD++  A +D+ ++  ++++Y      +
Sbjct: 273 IALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGK 332

Query: 337 MALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALV 396
            A++ +++M+L   ++++ T  S L+ CS    +  GR+LH   V      ++ V  ALV
Sbjct: 333 DAIQLYQRMQL---RADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALV 389

Query: 397 AMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD-------E 449
           +MYAKCGS  +A AVF     R   SW  +I  YV+  L  +A   F+ ML+       +
Sbjct: 390 SMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQ 449

Query: 450 GYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTE 509
              PD + FV +L+AC+ +  +E+GK   S      G++        ++++ G+ G+  E
Sbjct: 450 RVKPDALAFVTILNACADVSALEQGKM-VSEQAASCGLSSDKAVGTAVVNLYGKCGEIEE 508

Query: 510 IENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
                      P+  +W  ++   +  G        + + L+L  +ME   V P   S
Sbjct: 509 GRRIFDGVCSRPDVQLWNAMIAVYAQFGQ-------SHEALKLFWRMEMEGVRPDSFS 559


>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
           [Vitis vinifera]
          Length = 807

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 189/606 (31%), Positives = 329/606 (54%), Gaps = 6/606 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMK-DMEKKFSKFSLSTVLK 59
           +E A ++F+ MPE+++VSWN +++G+ +S D  + +  F SM  +     ++ +  + + 
Sbjct: 160 VEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSLMFFRSMVWEFGIYPNRVACVSSIL 219

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD--- 116
             ++   +  G+ +H + ++ G  ++++L  SL++MY KCG   NA  +F  I D D   
Sbjct: 220 SCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNAENIFNSILDKDSVR 279

Query: 117 --VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
              V W  +I+     GC  +A  +F  M    +KP+   + SL    +E+ D   G+ I
Sbjct: 280 RNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSESLDIAFGKQI 339

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H +I K+G +++  V  AL+ MY++ G +  G ++F    + + + W+A+ S       P
Sbjct: 340 HGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLIMWSAVISNCAQSGCP 399

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
            + L +FY+  ++    +    + +L+ACSSL+    G Q+H    K     +  VG++L
Sbjct: 400 TKALELFYEFKMEDGLADSGILVAVLRACSSLTLKPEGMQIHGLATKMGFVSDVFVGSAL 459

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           VD+Y K   +  +   F  L+ KDL ++ A+I+ YAQ   A+ ALK FR M+LE I+ N 
Sbjct: 460 VDLYAKCRDMGYSKKVFLRLSQKDLVSWNALISGYAQDECADEALKAFRDMQLEEIRPNT 519

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            T+A  L+ C+ ++ +   + +H   ++ G    + VS +L+A YAKCG I+ +   F+ 
Sbjct: 520 VTIACILSVCAHLSVMTLCKEVHGYLIRQGLGSTVLVSNSLIATYAKCGDINSSLYTFEK 579

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
              R+  SWN +I G   H   ++ +  F  M+  G  PD +TF  +LSACSH G ++EG
Sbjct: 580 MPERNDVSWNSIILGMGMHSRTDEMIVLFDKMVASGIKPDHVTFTAILSACSHAGRVDEG 639

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
            K+F S+ + + + P ++ + CM+D+LGRAG   +  + I     TP+  +W +LLG+C 
Sbjct: 640 CKYFKSMVEDFNLKPQLEQYTCMVDLLGRAGHLNQAYDLIMAMPCTPDDRIWGSLLGSCK 699

Query: 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSC 594
            HG+  L E  A  + +L P      V  +++    G+  + S VR+ +   G+KK+P C
Sbjct: 700 NHGDEILAEIVANHIFKLVPSSVGYRVLLANLYENLGKGREGSKVRSEIKDMGLKKKPGC 759

Query: 595 SWIEVD 600
           SWIEVD
Sbjct: 760 SWIEVD 765



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 158/598 (26%), Positives = 283/598 (47%), Gaps = 44/598 (7%)

Query: 20  NALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFS-LSTVLKGFANSGYIKAGQVVHAMAI 78
           N ++  Y E G     + ++  M D   K  +F     ++K F     +  G+ +H   +
Sbjct: 77  NNVIREYTEDGFFDDAIGVYLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYKGRQIHGHVL 136

Query: 79  RLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAK 138
           +LG   D  +  SL+ MY KCG+ ++A+++F ++ + D+V+W  +I+   +      +  
Sbjct: 137 KLGVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSLM 196

Query: 139 IF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMY 197
            F +++ E  + PN+    S + + +       G  IH V+ K G + +  + ++L+ MY
Sbjct: 197 FFRSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMY 256

Query: 198 MENGRVSYGSRVFEAIAHQDSVS-----WNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           M+ G +     +F +I  +DSV      WN + S +       Q L +F +M++ G KP+
Sbjct: 257 MKCGSIKNAENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPD 316

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
             T + +   CS   D+ FGKQ+H    K  L  N  V T+L+DMY K G +      F 
Sbjct: 317 YSTMVSLFSLCSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFR 376

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
              N +L  ++A+I++ AQ+G    AL+ F + ++E   ++   L + L  CS +     
Sbjct: 377 RSQNHNLIMWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLRACSSLTLKPE 436

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
           G  +H +A K G + D+FV +ALV +YAKC  +  ++ VF   + +D  SWN +I GY +
Sbjct: 437 GMQIHGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNALISGYAQ 496

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG-----------LIEEG------- 474
               ++AL+AFR M  E   P+ +T   +LS C+H+            LI +G       
Sbjct: 497 DECADEALKAFRDMQLEEIRPNTVTIACILSVCAHLSVMTLCKEVHGYLIRQGLGSTVLV 556

Query: 475 -KKHFSSIKKIYGITPTIKHFACMID---------ILG-----RAGKFTEIENFITETKL 519
                ++  K   I  ++  F  M +         ILG     R  +   + + +  + +
Sbjct: 557 SNSLIATYAKCGDINSSLYTFEKMPERNDVSWNSIILGMGMHSRTDEMIVLFDKMVASGI 616

Query: 520 TPNALVWENLLGACSWHGNIELDEKDAEKLLE---LEPKMESNYVFPSDISATQGRWN 574
            P+ + +  +L ACS  G ++   K  + ++E   L+P++E  Y    D+    G  N
Sbjct: 617 KPDHVTFTAILSACSHAGRVDEGCKYFKSMVEDFNLKPQLE-QYTCMVDLLGRAGHLN 673


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 195/637 (30%), Positives = 332/637 (52%), Gaps = 45/637 (7%)

Query: 4   AKRVFKSMP--ELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           A+ VF+SM   + NVVSWNA++  YA++G   + + L+  M          +  +VL   
Sbjct: 61  ARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGAC 120

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKF--LSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           ++   +  G+ +H      G  LD F  L+ +LV MY++ G   +A ++F  ++  D  +
Sbjct: 121 SS---LAQGREIHNRVFYSG--LDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETS 175

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W A+I    Q G    A +IF  M+   VKPN     +++   +       G  IHA I 
Sbjct: 176 WNAVILAHSQSGDWSGALRIFKEMK-CDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIV 234

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
             GF++D +V  AL++MY + G       VF+ +  +D VSWN +   +       + L 
Sbjct: 235 ANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALE 294

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           ++ ++ ++GFK    TF+ IL ACSS+  +  G+ +H+H ++  LD    V T+LV+MY 
Sbjct: 295 LYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYA 354

Query: 300 KSGCLEDAGVAFDSLANKDLFAYT----------------------------------AI 325
           K G LE+A   F+++ N+D  A++                                  A+
Sbjct: 355 KCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAM 414

Query: 326 ITSYAQAGEAEMALKCFRKMR-LEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           IT+Y Q G A  A+K FR+M    G+K +  T  + L  C+ +  L+  + LH+   ++ 
Sbjct: 415 ITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESE 474

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
              ++ V+  L+ MYA+CGS+++AE +F  +  +   SW  M+  + ++G   +AL+ F+
Sbjct: 475 LESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQ 534

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA 504
            M  EG  PD++T+  +L  C+H G +E+G ++F+ + +++ + PT  HFA M+D+LGR+
Sbjct: 535 EMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFAAMVDLLGRS 594

Query: 505 GKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564
           G+  + +  +      P+ + W   L AC  HG +EL E  AE++ EL+P   + Y+  S
Sbjct: 595 GRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMS 654

Query: 565 DISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           +I A  G W   + VR  +  +G+KK P  S+IEVDG
Sbjct: 655 NIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDG 691



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 162/565 (28%), Positives = 263/565 (46%), Gaps = 56/565 (9%)

Query: 45  MEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCAL---DKFLSCSLVDMYSKCGL 101
           M+++    +  TVL   ++ G +  G+ +H    R+ C+    D  +  +L+ MY KC  
Sbjct: 1   MDRQPDNVTFLTVLCSCSSCGDVVEGRALHE---RIRCSRFERDTMVGNALISMYGKCDS 57

Query: 102 ADNALKVFYRI--KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLV 159
             +A  VF  +  +  +VV+W A+I    Q G   EA  ++  M    +  +     S++
Sbjct: 58  LVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVL 117

Query: 160 RATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSV 219
            A +       G  IH  +   G +S   + NALV+MY   G V    R+F+++  +D  
Sbjct: 118 GACSSLAQ---GREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDET 174

Query: 220 SWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHT 279
           SWNA+             LRIF +M     KPN  T+I ++   S+   +  G+++HA  
Sbjct: 175 SWNAVILAHSQSGDWSGALRIFKEMKCD-VKPNSTTYINVISGFSTPEVLPEGRKIHAEI 233

Query: 280 IKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMAL 339
           + +  D + VV T+L++MY K G   +A   FD +  +D+ ++  +I  Y   G+   AL
Sbjct: 234 VANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEAL 293

Query: 340 KCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMY 399
           + ++K+ +EG K  + T  S L  CS V  LA GRL+HS  ++ G   ++ V+TALV MY
Sbjct: 294 ELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMY 353

Query: 400 AKCGSIDDAEAVFKG---------SAL-------------------------RDTASWNM 425
           AKCGS+++A  VF           S L                         RDT SWN 
Sbjct: 354 AKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNA 413

Query: 426 MIGGYVKHGLGEKALEAFRMMLD-EGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
           MI  YV++G    A++ FR M    G  PD +TF+ VL AC+ +G + E K   + I + 
Sbjct: 414 MITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISE- 472

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEK 544
             +   +     +I++  R G   E E      K     + W  ++ A S +G       
Sbjct: 473 SELESNVVVTNTLINMYARCGSLEEAERLFAAAK-EKTVVSWTAMVAAFSQYGRY----- 526

Query: 545 DAEKLLELEPKMESNYVFPSDISAT 569
              + L+L  +M+   V P D++ T
Sbjct: 527 --AEALDLFQEMDLEGVKPDDVTYT 549



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 111/264 (42%), Gaps = 49/264 (18%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESG---DGQKVMHLF------------------ 39
           +E A++VF +M   + V+W+ L+  YA +G   D +K   +F                  
Sbjct: 359 LEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTY 418

Query: 40  ----CSMKDME----------KKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALD 85
               C++  M+           K    +   VL+  A+ G +   + +HA         +
Sbjct: 419 VQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESN 478

Query: 86  KFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRE 145
             ++ +L++MY++CG  + A ++F   K+  VV+W A++    Q G   EA  +F  M  
Sbjct: 479 VVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDL 538

Query: 146 SSVKPNQFVLTSLVRATTETGDQRCG-------ESIHAVICKYGFESDTLVGNALVSMYM 198
             VKP+    TS++   T  G    G         +HA+       +D     A+V +  
Sbjct: 539 EGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHAL----APTADHFA--AMVDLLG 592

Query: 199 ENGRVSYGSRVFEAIAHQ-DSVSW 221
            +GR+     + E++  + D V+W
Sbjct: 593 RSGRLFDAKELLESMPFEPDPVAW 616


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 188/552 (34%), Positives = 302/552 (54%), Gaps = 4/552 (0%)

Query: 53  SLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI 112
           +L ++L+     G    G  VH   ++ G  L+   S  L+DMY KC     A KVF  +
Sbjct: 8   NLVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSM 67

Query: 113 KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172
            + +VV+W A+++     G  + +  +F+ M    + PN+F  ++ ++A         G 
Sbjct: 68  PERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGL 127

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
            IH    K GFE    VGN+LV MY + GR++   +VF  I  +  +SWNA+ + F    
Sbjct: 128 QIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAG 187

Query: 233 SPDQGLRIFYQMLLKGFK--PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLD--GNH 288
              + L  F  M     K  P+  T   +LKACSS   +  GKQ+H   ++       + 
Sbjct: 188 YGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSA 247

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
            +  SLVD+Y K G L  A  AFD +  K + +++++I  YAQ GE   A+  F++++  
Sbjct: 248 TITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQEL 307

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
             + + F L+S +   +  A L  G+ + ++AVK    L+  V  ++V MY KCG +D+A
Sbjct: 308 NSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEA 367

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
           E  F    L+D  SW ++I GY KHGLG+K++  F  ML     PDE+ ++ VLSACSH 
Sbjct: 368 EKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHS 427

Query: 469 GLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWEN 528
           G+I+EG++ FS + + +GI P ++H+AC++D+LGRAG+  E ++ I    + PN  +W+ 
Sbjct: 428 GMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQT 487

Query: 529 LLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGI 588
           LL  C  HG+IEL ++  + LL ++ K  +NYV  S++    G WN+    R L + +G+
Sbjct: 488 LLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGL 547

Query: 589 KKEPSCSWIEVD 600
           KKE   SW+E++
Sbjct: 548 KKEAGMSWVEIE 559



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 123/451 (27%), Positives = 226/451 (50%), Gaps = 6/451 (1%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           +A +VF SMPE NVVSW+AL++G+  +GD +  + LF  M       ++F+ ST LK   
Sbjct: 59  MAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACG 118

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
               ++ G  +H   +++G  +   +  SLVDMYSKCG  + A KVF RI D  +++W A
Sbjct: 119 LLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNA 178

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVK--PNQFVLTSLVRATTETGDQRCGESIHAVICK 180
           +I      G   +A   F +M+E+++K  P++F LTSL++A + TG    G+ IH  + +
Sbjct: 179 MIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVR 238

Query: 181 YGFE--SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            GF   S   +  +LV +Y++ G +    + F+ I  +  +SW++L   +       + +
Sbjct: 239 SGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAM 298

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            +F ++     + +      I+   +  + +  GKQ+ A  +K        V  S+VDMY
Sbjct: 299 GLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMY 358

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G +++A   F  +  KD+ ++T +IT Y + G  + +++ F +M    I+ +E    
Sbjct: 359 LKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYL 418

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA-LVAMYAKCGSIDDAEAVFKGSAL 417
           + L+ CS    +  G  L S  ++T  +       A +V +  + G + +A+ +     +
Sbjct: 419 AVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPI 478

Query: 418 R-DTASWNMMIGGYVKHGLGEKALEAFRMML 447
           + +   W  ++     HG  E   E  +++L
Sbjct: 479 KPNVGIWQTLLSLCRVHGDIELGKEVGKILL 509



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 82/180 (45%), Gaps = 5/180 (2%)

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           I +    L S L  C+       G  +H   +K+G  L++  S  L+ MY KC     A 
Sbjct: 2   IPNQRQNLVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAY 61

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
            VF     R+  SW+ ++ G+V +G  + +L  F  M  +G  P+E TF   L AC  + 
Sbjct: 62  KVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLN 121

Query: 470 LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIE----NFITETKLTPNALV 525
            +E+G +      KI G    ++    ++D+  + G+  E E      +  + ++ NA++
Sbjct: 122 ALEKGLQIHGFCLKI-GFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMI 180


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 191/599 (31%), Positives = 314/599 (52%), Gaps = 2/599 (0%)

Query: 4    AKRVFKSMPELN-VVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
             +R+F  +   N V  WN +++ YA+ GD ++ ++LF  M+ +    + ++ S +LK FA
Sbjct: 505  GRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFA 564

Query: 63   NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
              G +   + +H    +LG      +  SL+  Y K G  D+A K+F  + D DVV+W +
Sbjct: 565  TLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNS 624

Query: 123  IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
            +I+     G    A + F  M    V  +   L + V A    G    G ++H    K  
Sbjct: 625  MISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKAC 684

Query: 183  FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            F  + +  N L+ MY + G ++   + FE +  +  VSW +L + +      D  +R+FY
Sbjct: 685  FSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFY 744

Query: 243  QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            +M  KG  P++ +   +L AC+  + +  G+ +H +  K+++     V  +L+DMY K G
Sbjct: 745  EMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCG 804

Query: 303  CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
             +E+A + F  +  KD+ ++  +I  Y++      ALK F +M+ E  + +  T+A  L 
Sbjct: 805  SMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLP 863

Query: 363  GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
             C  +A L  GR +H   ++ G+  ++ V+ AL+ MY KCGS+  A  +F     +D  +
Sbjct: 864  ACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLIT 923

Query: 423  WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
            W +MI G   HGLG +A+  F+ M   G  PDEITF  +L ACSH GL+ EG   F+S+ 
Sbjct: 924  WTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMI 983

Query: 483  KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
                + P ++H+ACM+D+L R G  ++  N I    + P+A +W  LL  C  H ++EL 
Sbjct: 984  SECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELA 1043

Query: 543  EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
            EK AE + ELEP     YV  ++I A   +W +   +R  +  +G+KK P CSWIEV G
Sbjct: 1044 EKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQG 1102



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 145/524 (27%), Positives = 255/524 (48%), Gaps = 16/524 (3%)

Query: 20  NALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIR 79
           N  +  + E GD +  + L    +  E   + +S  ++L+  A    ++ G++VH++   
Sbjct: 422 NTKICKFCEVGDLRNAVELLRMSQKSELDLNAYS--SILQLCAEHKCLQEGKMVHSVISS 479

Query: 80  LGCALDKFLSCSLVDMYSKCGLADNALKVFYRI-KDPDVVAWGAIITCLDQQGCCQEAAK 138
            G  ++  L   LV MY  CG      ++F  I  D  V  W  +++   + G  +E+  
Sbjct: 480 NGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIY 539

Query: 139 IFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE--SIHAVICKYGFESDTLVGNALVSM 196
           +F  M++  +  N +  + +++     G  R GE   IH  + K GF S   V N+L++ 
Sbjct: 540 LFKKMQKLGITGNSYTFSCILKCFATLG--RVGECKRIHGCVYKLGFGSYNTVVNSLIAT 597

Query: 197 YMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTF 256
           Y ++G V    ++F+ +  +D VSWN++ S           L  F QML+     ++ T 
Sbjct: 598 YFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATL 657

Query: 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
           +  + AC+++  +  G+ LH   +K       +   +L+DMY K G L DA  AF+ +  
Sbjct: 658 VNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQ 717

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL 376
           K + ++T++I +Y + G  + A++ F +M  +G+  + +++ S L+ C+   +L  GR +
Sbjct: 718 KTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDV 777

Query: 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
           H+   K    L + VS AL+ MYAKCGS+++A  VF    ++D  SWN MIGGY K+ L 
Sbjct: 778 HNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLP 837

Query: 437 EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFAC 496
            +AL+ F  M  E   PD IT   +L AC  +  +E G+     I +  G +  +     
Sbjct: 838 NEALKLFAEMQKESR-PDGITMACLLPACGSLAALEIGRGIHGCILR-NGYSSELHVANA 895

Query: 497 MIDILGRAGKFTEIE---NFITETKLTPNALVWENLLGACSWHG 537
           +ID+  + G         + I E  L    + W  ++  C  HG
Sbjct: 896 LIDMYVKCGSLVHARLLFDMIPEKDL----ITWTVMISGCGMHG 935


>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
          Length = 870

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 193/598 (32%), Positives = 314/598 (52%), Gaps = 1/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A RVF  MPE +V SWN ++ GY + G  ++ + L+  M     +   ++   VL+    
Sbjct: 150 AWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGG 209

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
               + G+ VHA  +R G   +  +  +LV MY+KCG    A KVF  +   D ++W A+
Sbjct: 210 IPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAM 269

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    +   C+   ++F  M E+ V+PN   +TS+  A+    +    + +H    K GF
Sbjct: 270 IAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGF 329

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D    N+L+ MY   GR+    ++F  +  +D++SW A+ S ++    PD+ L ++  
Sbjct: 330 AIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYAL 389

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M L    P+  T    L AC+ L  +  G +LH            VV  +L++MY KS  
Sbjct: 390 MELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKH 449

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++ A   F  +A KD+ +++++I  +     +  AL  FR M L  +K N  T  + L+ 
Sbjct: 450 IDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYM-LGHVKPNSVTFIAALSA 508

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+    L +G+ +H+  ++ G   + +V  AL+ +Y KCG    A A F   + +D  SW
Sbjct: 509 CAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSW 568

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N+M+ G+V HGLG+ AL  F  M++ G  PDE+TFV +L ACS  G++ +G + F  + +
Sbjct: 569 NIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTE 628

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            + I P +KH+ACM+D+L R GK TE  N I    + P+A VW  LL  C  H ++EL E
Sbjct: 629 KFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGE 688

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
             A+ +LELEP   + +V   D+    G+W   + VR  +  +G++++  CSW+EV G
Sbjct: 689 LAAKVILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGLEQDNGCSWVEVKG 746



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 126/391 (32%), Positives = 210/391 (53%), Gaps = 5/391 (1%)

Query: 88  LSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESS 147
           L  +++ M  + G   +A +VF ++ + DV +W  ++    + G  +EA  ++  M  + 
Sbjct: 133 LGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAG 192

Query: 148 VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGS 207
           ++P+ +    ++R      D R G  +HA + ++GF  +  V NALV+MY + G +    
Sbjct: 193 MRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAAR 252

Query: 208 RVFEAIAHQDSVSWNALFS-RFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266
           +VF+ +A  D +SWNA+ +  F+++E  + GL +F  ML    +PN+ T   +  A   L
Sbjct: 253 KVFDGMAVTDCISWNAMIAGHFENHEC-EAGLELFLTMLENEVQPNLMTITSVTVASGML 311

Query: 267 SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
           S+VGF K++H   +K     +     SL+ MY   G + DAG  F  +  KD  ++TA+I
Sbjct: 312 SEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMI 371

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL 386
           + Y + G  + AL+ +  M L  +  ++ T+AS L  C+ +  L  G  LH +A   G +
Sbjct: 372 SGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFI 431

Query: 387 LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM 446
             + V+ AL+ MYAK   ID A  VFK  A +D  SW+ MI G+  +    +AL  FR M
Sbjct: 432 RYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYM 491

Query: 447 LDEGYV-PDEITFVVVLSACSHMGLIEEGKK 476
           L  G+V P+ +TF+  LSAC+  G +  GK+
Sbjct: 492 L--GHVKPNSVTFIAALSACAATGALRSGKE 520


>gi|357129947|ref|XP_003566620.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Brachypodium distachyon]
          Length = 902

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 198/596 (33%), Positives = 310/596 (52%), Gaps = 3/596 (0%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           VF    E NVV WNA+LNG   +    + + +F  MK +  +  +F+  +VL   A+   
Sbjct: 257 VFDCSGEKNVVMWNAMLNGLVRNEYQVEAIQMFLYMKRLGLEADEFTYVSVLGACAHLDS 316

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
              G+ V  + I+       F++ + +DM+SK G  D+A  +F  I   D V+W A++  
Sbjct: 317 HCLGRQVQCVTIKNCMDASLFVANATLDMHSKFGAIDDAKTLFNLITYKDTVSWNALLVG 376

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
           L      +EA  +   M    V P++    +++ A +       G+ IH +  K+   S+
Sbjct: 377 LTHNEEDEEAIHMLKGMNLDGVTPDEVSFATVINACSNIRATETGKQIHCLAMKHSICSN 436

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             VG++L+  Y ++G V    +V   +     V  N L +        D+ + +F Q+L 
Sbjct: 437 HAVGSSLIDFYSKHGDVESCRKVLAQVDASSIVPRNVLIAGLVQNNREDEAIDLFQQVLR 496

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS-LDGNHVVGTSLVDMYDKSGCLE 305
            G KP+  TF  IL  C+ L     GKQ+H +T+K   L+ +  VG SLV  Y K+   E
Sbjct: 497 DGLKPSSFTFSSILSGCTGLLSSIIGKQVHCYTLKSGFLNDDTSVGVSLVGTYLKARMPE 556

Query: 306 DAGVAFDSLAN-KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
           DA      + + K+L  +TAI++ YAQ G +  +L  F +MR   +  +E T AS L  C
Sbjct: 557 DANKLLIEMPDHKNLVEWTAIVSGYAQNGYSYQSLLSFWRMRSYDVHPDEVTFASILKAC 616

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG-SALRDTASW 423
           S +  L++G+ +H + +K+G       ++A++ MY+KCG I  +   FK   + +D   W
Sbjct: 617 SEMTALSDGKEIHGLIIKSGFGSYKTATSAIIDMYSKCGDIISSFEAFKELKSKQDITLW 676

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N MI G+ K+G  ++AL  F+ M D     DE+TF+ VL AC+H GLI EG+ +F S+ K
Sbjct: 677 NSMILGFAKNGYADEALLLFQKMQDSQIKSDEVTFLGVLIACAHAGLISEGRHYFDSMSK 736

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
           +YGI P + H+AC ID+LGR G   E +  I E    P+ ++W   L AC  H + E  E
Sbjct: 737 VYGIMPRVDHYACFIDLLGRGGHLQEAQEVINELPFRPDGVIWATYLAACRMHKDEERGE 796

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
             A++L+ELEP+  S YV  S++ A  G W +    R  +  +G  K P CSWI V
Sbjct: 797 IAAKELVELEPQNSSTYVLLSNMYAAAGNWVEAKMAREAMREKGATKFPGCSWITV 852



 Score =  231 bits (589), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 147/535 (27%), Positives = 265/535 (49%), Gaps = 7/535 (1%)

Query: 1   MELAKRVFKSMP-ELNVVSWNALLNGYAE-SGDGQKVMHLFCSMKDMEKKFSKFSLSTVL 58
           +E A+ +   MP   + V+WNA+++GYA+ SG   +V  L+  M+      ++ + +++L
Sbjct: 148 LEDARTLLHRMPAPSSTVAWNAVISGYAQQSGIEHEVFGLYKDMRCWGLWPTRSTFASML 207

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
              AN+     G+ VHA A+R G   + F+  SL+++Y+KCG   +A+ VF    + +VV
Sbjct: 208 SAAANATAFIEGRQVHAAAVRHGLDANVFVGSSLINLYAKCGCIGDAILVFDCSGEKNVV 267

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            W A++  L +     EA ++F  M+   ++ ++F   S++ A         G  +  V 
Sbjct: 268 MWNAMLNGLVRNEYQVEAIQMFLYMKRLGLEADEFTYVSVLGACAHLDSHCLGRQVQCVT 327

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K   ++   V NA + M+ + G +     +F  I ++D+VSWNAL       E  ++ +
Sbjct: 328 IKNCMDASLFVANATLDMHSKFGAIDDAKTLFNLITYKDTVSWNALLVGLTHNEEDEEAI 387

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            +   M L G  P+  +F  ++ ACS++     GKQ+H   +KHS+  NH VG+SL+D Y
Sbjct: 388 HMLKGMNLDGVTPDEVSFATVINACSNIRATETGKQIHCLAMKHSICSNHAVGSSLIDFY 447

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G +E        +    +     +I    Q    + A+  F+++  +G+K + FT +
Sbjct: 448 SKHGDVESCRKVLAQVDASSIVPRNVLIAGLVQNNREDEAIDLFQQVLRDGLKPSSFTFS 507

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLL-DMFVSTALVAMYAKCGSIDDAEAVF-KGSA 416
           S L+GC+ + +   G+ +H   +K+G L  D  V  +LV  Y K    +DA  +  +   
Sbjct: 508 SILSGCTGLLSSIIGKQVHCYTLKSGFLNDDTSVGVSLVGTYLKARMPEDANKLLIEMPD 567

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            ++   W  ++ GY ++G   ++L +F  M      PDE+TF  +L ACS M  + +GK+
Sbjct: 568 HKNLVEWTAIVSGYAQNGYSYQSLLSFWRMRSYDVHPDEVTFASILKACSEMTALSDGKE 627

Query: 477 -HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
            H   IK  +G   T    + +ID+  + G          E K   +  +W +++
Sbjct: 628 IHGLIIKSGFGSYKTAT--SAIIDMYSKCGDIISSFEAFKELKSKQDITLWNSMI 680



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 138/522 (26%), Positives = 249/522 (47%), Gaps = 38/522 (7%)

Query: 51  KFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFY 110
           +F L+  L   +  G + +G+  H  A + G     F + +LV+MY++CG   +A +VF 
Sbjct: 31  QFDLAATLSACSRLGALVSGKQAHCDAEKRGLGSGAFCAAALVNMYARCGRVGDARRVFG 90

Query: 111 RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC 170
            I  PD V W ++I+   + G  QEA  +F  M +    P++    ++V A T  G    
Sbjct: 91  GISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAVVCALTALGRL-- 148

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
            E    ++ +    S T+  NA++S Y +             I H+       +F  ++D
Sbjct: 149 -EDARTLLHRMPAPSSTVAWNAVISGYAQQ----------SGIEHE-------VFGLYKD 190

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
                        M   G  P   TF  +L A ++ +    G+Q+HA  ++H LD N  V
Sbjct: 191 -------------MRCWGLWPTRSTFASMLSAAANATAFIEGRQVHAAAVRHGLDANVFV 237

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
           G+SL+++Y K GC+ DA + FD    K++  + A++    +      A++ F  M+  G+
Sbjct: 238 GSSLINLYAKCGCIGDAILVFDCSGEKNVVMWNAMLNGLVRNEYQVEAIQMFLYMKRLGL 297

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
           +++EFT  S L  C+ + +   GR +  + +K      +FV+ A + M++K G+IDDA+ 
Sbjct: 298 EADEFTYVSVLGACAHLDSHCLGRQVQCVTIKNCMDASLFVANATLDMHSKFGAIDDAKT 357

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           +F     +DT SWN ++ G   +   E+A+   + M  +G  PDE++F  V++ACS++  
Sbjct: 358 LFNLITYKDTVSWNALLVGLTHNEEDEEAIHMLKGMNLDGVTPDEVSFATVINACSNIRA 417

Query: 471 IEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENL 529
            E GK+ H  ++K  + I       + +ID   + G        + +  +  +++V  N+
Sbjct: 418 TETGKQIHCLAMK--HSICSNHAVGSSLIDFYSKHGDVESCRKVLAQ--VDASSIVPRNV 473

Query: 530 LGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQG 571
           L A     N E +  D  + +  +    S++ F S +S   G
Sbjct: 474 LIAGLVQNNREDEAIDLFQQVLRDGLKPSSFTFSSILSGCTG 515



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 146/322 (45%), Gaps = 35/322 (10%)

Query: 148 VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGS 207
           V+P+QF L + + A +  G    G+  H    K G  S      ALV+MY   GRV    
Sbjct: 27  VRPDQFDLAATLSACSRLGALVSGKQAHCDAEKRGLGSGAFCAAALVNMYARCGRVGDAR 86

Query: 208 RVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLS 267
           RVF  I+  D+V W ++ S +       + + +F +M   G  P+  T + ++ A ++L 
Sbjct: 87  RVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAVVCALTAL- 145

Query: 268 DVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIIT 327
               G+   A T+ H +                              A     A+ A+I+
Sbjct: 146 ----GRLEDARTLLHRMP-----------------------------APSSTVAWNAVIS 172

Query: 328 SYA-QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL 386
            YA Q+G        ++ MR  G+     T AS L+  +       GR +H+ AV+ G  
Sbjct: 173 GYAQQSGIEHEVFGLYKDMRCWGLWPTRSTFASMLSAAANATAFIEGRQVHAAAVRHGLD 232

Query: 387 LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM 446
            ++FV ++L+ +YAKCG I DA  VF  S  ++   WN M+ G V++    +A++ F  M
Sbjct: 233 ANVFVGSSLINLYAKCGCIGDAILVFDCSGEKNVVMWNAMLNGLVRNEYQVEAIQMFLYM 292

Query: 447 LDEGYVPDEITFVVVLSACSHM 468
              G   DE T+V VL AC+H+
Sbjct: 293 KRLGLEADEFTYVSVLGACAHL 314



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 72/127 (56%)

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
           G++ ++F LA+ L+ CS +  L +G+  H  A K G     F + ALV MYA+CG + DA
Sbjct: 26  GVRPDQFDLAATLSACSRLGALVSGKQAHCDAEKRGLGSGAFCAAALVNMYARCGRVGDA 85

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
             VF G +L DT  W  MI GY + G  ++A+  F  M   G  PD +T V V+ A + +
Sbjct: 86  RRVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAVVCALTAL 145

Query: 469 GLIEEGK 475
           G +E+ +
Sbjct: 146 GRLEDAR 152



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 105/261 (40%), Gaps = 40/261 (15%)

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           G +P+       L ACS L  +  GKQ H    K  L        +LV+MY + G + DA
Sbjct: 26  GVRPDQFDLAATLSACSRLGALVSGKQAHCDAEKRGLGSGAFCAAALVNMYARCGRVGDA 85

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367
              F  ++  D   + ++I+ Y +AG  + A+  F +M                      
Sbjct: 86  RRVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRME--------------------- 124

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF-KGSALRDTASWNMM 426
                         K G   D     A+V      G ++DA  +  +  A   T +WN +
Sbjct: 125 --------------KMGSSPDRVTCVAVVCALTALGRLEDARTLLHRMPAPSSTVAWNAV 170

Query: 427 IGGYVKH-GLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKI 484
           I GY +  G+  +    ++ M   G  P   TF  +LSA ++     EG++ H ++++  
Sbjct: 171 ISGYAQQSGIEHEVFGLYKDMRCWGLWPTRSTFASMLSAAANATAFIEGRQVHAAAVR-- 228

Query: 485 YGITPTIKHFACMIDILGRAG 505
           +G+   +   + +I++  + G
Sbjct: 229 HGLDANVFVGSSLINLYAKCG 249


>gi|297604953|ref|NP_001056393.2| Os05g0574800 [Oryza sativa Japonica Group]
 gi|255676596|dbj|BAF18307.2| Os05g0574800 [Oryza sativa Japonica Group]
          Length = 857

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 193/598 (32%), Positives = 314/598 (52%), Gaps = 1/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A RVF  MPE +V SWN ++ GY + G  ++ + L+  M     +   ++   VL+    
Sbjct: 150 AWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGG 209

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
               + G+ VHA  +R G   +  +  +LV MY+KCG    A KVF  +   D ++W A+
Sbjct: 210 IPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAM 269

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    +   C+   ++F  M E+ V+PN   +TS+  A+    +    + +H    K GF
Sbjct: 270 IAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGF 329

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D    N+L+ MY   GR+    ++F  +  +D++SW A+ S ++    PD+ L ++  
Sbjct: 330 AIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYAL 389

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M L    P+  T    L AC+ L  +  G +LH            VV  +L++MY KS  
Sbjct: 390 MELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKH 449

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++ A   F  +A KD+ +++++I  +     +  AL  FR M L  +K N  T  + L+ 
Sbjct: 450 IDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYM-LGHVKPNSVTFIAALSA 508

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+    L +G+ +H+  ++ G   + +V  AL+ +Y KCG    A A F   + +D  SW
Sbjct: 509 CAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSW 568

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N+M+ G+V HGLG+ AL  F  M++ G  PDE+TFV +L ACS  G++ +G + F  + +
Sbjct: 569 NIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTE 628

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            + I P +KH+ACM+D+L R GK TE  N I    + P+A VW  LL  C  H ++EL E
Sbjct: 629 KFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGE 688

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
             A+ +LELEP   + +V   D+    G+W   + VR  +  +G++++  CSW+EV G
Sbjct: 689 LAAKVILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGLEQDNGCSWVEVKG 746



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 126/391 (32%), Positives = 210/391 (53%), Gaps = 5/391 (1%)

Query: 88  LSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESS 147
           L  +++ M  + G   +A +VF ++ + DV +W  ++    + G  +EA  ++  M  + 
Sbjct: 133 LGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAG 192

Query: 148 VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGS 207
           ++P+ +    ++R      D R G  +HA + ++GF  +  V NALV+MY + G +    
Sbjct: 193 MRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAAR 252

Query: 208 RVFEAIAHQDSVSWNALFS-RFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266
           +VF+ +A  D +SWNA+ +  F+++E  + GL +F  ML    +PN+ T   +  A   L
Sbjct: 253 KVFDGMAVTDCISWNAMIAGHFENHEC-EAGLELFLTMLENEVQPNLMTITSVTVASGML 311

Query: 267 SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
           S+VGF K++H   +K     +     SL+ MY   G + DAG  F  +  KD  ++TA+I
Sbjct: 312 SEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMI 371

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL 386
           + Y + G  + AL+ +  M L  +  ++ T+AS L  C+ +  L  G  LH +A   G +
Sbjct: 372 SGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFI 431

Query: 387 LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM 446
             + V+ AL+ MYAK   ID A  VFK  A +D  SW+ MI G+  +    +AL  FR M
Sbjct: 432 RYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYM 491

Query: 447 LDEGYV-PDEITFVVVLSACSHMGLIEEGKK 476
           L  G+V P+ +TF+  LSAC+  G +  GK+
Sbjct: 492 L--GHVKPNSVTFIAALSACAATGALRSGKE 520


>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
 gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
          Length = 844

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 196/599 (32%), Positives = 318/599 (53%), Gaps = 29/599 (4%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMH---LFCSMKDMEKKFSKFSLSTVLKGFAN 63
            F  +   +V +WN +++GY  +G+  +V+    LF     +   +  F   +VLK    
Sbjct: 41  TFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFP--SVLKACRT 98

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G  +H +A++ G   D +++ SL+ +YS+     NA  +F  +   D+ +W A+
Sbjct: 99  ---VIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAM 155

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   Q G  +EA  + N +R      +   + SL+ A TE GD   G +IH+   K+G 
Sbjct: 156 ISGYCQSGNAKEALTLSNGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGL 211

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           ES+ L                   +VF+ +  +D +SWN++   ++  E P + + +F +
Sbjct: 212 ESELLRD---------------CQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQE 256

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS-LDGNHVVGTSLVDMYDKSG 302
           M L   +P+  T I +    S L D+   + +   T++      +  +G ++V MY K G
Sbjct: 257 MRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLG 316

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG-IKSNEFTLASCL 361
            ++ A   F+ L N D+ ++  II+ YAQ G A  A++ +  M  EG I +N+ T  S L
Sbjct: 317 LVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVL 376

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
             CS    L  G  LH   +K G  LD+FV T+L  MY KCG ++DA ++F      ++ 
Sbjct: 377 PACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSV 436

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
            WN +I  +  HG GEKA+  F+ MLDEG  PD ITFV +LSACSH GL++EG+  F  +
Sbjct: 437 PWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMM 496

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
           +  YGITP++KH+ CM+D+ GRAG+      FI    L P+A +W  LL AC  HGN++L
Sbjct: 497 QTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDL 556

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
            +  +E L E+EP+    +V  S++ A+ G+W     +R++   +G++K P  S +EVD
Sbjct: 557 GKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVD 615



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 125/462 (27%), Positives = 217/462 (46%), Gaps = 31/462 (6%)

Query: 85  DKFLSCSLVDMYSKCGLADNALKV--FYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNL 142
           D  L C+  ++ +   L+ N  K+  F  I++ DV AW  +I+   + G   E  + F+L
Sbjct: 16  DIALICNQPNVSTHVSLSPNKSKMHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSL 75

Query: 143 -MRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENG 201
            M  S + P+     S+++A     D   G  IH +  K+GF  D  V  +L+ +Y    
Sbjct: 76  FMLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKFGFMWDVYVAASLIHLYSRYK 132

Query: 202 RVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKP-NMCTFIVIL 260
            V     +F+ +  +D  SWNA+ S +    +  + L      L  G +  +  T + +L
Sbjct: 133 AVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEAL-----TLSNGLRAMDSVTVVSLL 187

Query: 261 KACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLF 320
            AC+   D   G  +H+++IKH L+               S  L D    FD +  +DL 
Sbjct: 188 SACTEAGDFNRGVTIHSYSIKHGLE---------------SELLRDCQKVFDRMYVRDLI 232

Query: 321 AYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIA 380
           ++ +II +Y    +   A+  F++MRL  I+ +  TL S  +  S +  +   R +    
Sbjct: 233 SWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFT 292

Query: 381 VKTGHLL-DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
           ++ G  L D+ +  A+V MYAK G +D A AVF      D  SWN +I GY ++G   +A
Sbjct: 293 LRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEA 352

Query: 440 LEAFRMMLDEGYV-PDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMI 498
           +E + +M +EG +  ++ T+V VL ACS  G + +G K    + K  G+   +     + 
Sbjct: 353 IEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLK-NGLYLDVFVVTSLA 411

Query: 499 DILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           D+ G+ G+  +  +   +     N++ W  L+    +HG+ E
Sbjct: 412 DMYGKCGRLEDALSLFYQIPRV-NSVPWNTLIACHGFHGHGE 452



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 128/494 (25%), Positives = 219/494 (44%), Gaps = 31/494 (6%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F  MP  ++ SWNA+++GY +SG+ ++ + L   ++ M+      ++ ++L     
Sbjct: 137 ARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMD----SVTVVSLLSACTE 192

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +G    G  +H+ +I+ G   +    C                KVF R+   D+++W +I
Sbjct: 193 AGDFNRGVTIHSYSIKHGLESELLRDCQ---------------KVFDRMYVRDLISWNSI 237

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG- 182
           I   +       A  +F  MR S ++P+   L SL    ++ GD R   S+     + G 
Sbjct: 238 IKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGW 297

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F  D  +GNA+V MY + G V     VF  + + D +SWN + S +       + + ++ 
Sbjct: 298 FLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYN 357

Query: 243 QMLLKG-FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            M  +G    N  T++ +L ACS    +  G +LH   +K+ L  +  V TSL DMY K 
Sbjct: 358 IMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKC 417

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G LEDA   F  +   +   +  +I  +   G  E A+  F++M  EG+K +  T  + L
Sbjct: 418 GRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLL 477

Query: 362 NGCSPVATLANGRL-LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           + CS    +  G+     +    G    +     +V MY + G ++ A    K  +L+  
Sbjct: 478 SACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPD 537

Query: 421 AS-WNMMIGGYVKHG---LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
           AS W  ++     HG   LG+ A E    +      P+ + + V+LS         EG  
Sbjct: 538 ASIWGALLSACRVHGNVDLGKIASEHLFEV-----EPEHVGYHVLLSNMYASAGKWEGVD 592

Query: 477 HFSSIKKIYGITPT 490
              SI    G+  T
Sbjct: 593 EIRSIAHGKGLRKT 606



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 4/134 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  +F  +P +N V WN L+  +   G G+K + LF  M D   K    +  T+L  
Sbjct: 420 LEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSA 479

Query: 61  FANSGYIKAGQ-VVHAMAIRLGCALD-KFLSCSLVDMYSKCGLADNALKVFYRIK-DPDV 117
            ++SG +  GQ     M    G     K   C +VDMY + G  + ALK    +   PD 
Sbjct: 480 CSHSGLVDEGQWCFEMMQTDYGITPSLKHYGC-MVDMYGRAGQLETALKFIKSMSLQPDA 538

Query: 118 VAWGAIITCLDQQG 131
             WGA+++     G
Sbjct: 539 SIWGALLSACRVHG 552


>gi|302765581|ref|XP_002966211.1| hypothetical protein SELMODRAFT_85415 [Selaginella moellendorffii]
 gi|300165631|gb|EFJ32238.1| hypothetical protein SELMODRAFT_85415 [Selaginella moellendorffii]
          Length = 969

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 189/572 (33%), Positives = 314/572 (54%), Gaps = 10/572 (1%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYA-ESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           E ++ +F  M   + VSW+ ++   + E    +  + L+ SM          +LS VL+ 
Sbjct: 368 EDSRSLFDRMSVRDSVSWSTIIMACSREDSHCRDALPLYRSMLHEGVMPKTLALSMVLEA 427

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +   +K G++VHA  I  G   D  +  SLV+MY+KCG    A KVF RI +   + W
Sbjct: 428 CGSLAELKGGKLVHAHVIESGLEGD-LVGISLVNMYAKCGTVGEARKVFDRINNRSRILW 486

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++IT   Q+    EA  +F  M+   V P++    +++ A     D   G +IH  I  
Sbjct: 487 NSMITAY-QEKDPHEALHLFREMQPEGVSPDRITFMTVLNACVNAADLENGRTIHTRIVD 545

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GF +D  V  AL +MY + G +     VF+++  +D VSWN + + +      +  + +
Sbjct: 546 SGFAADVRVATALFNMYAKCGSLGEARGVFDSMVFRDVVSWNNMIAAYVQGRDGEGAISL 605

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
            + M L+G +P+  TF  +L ACS  + +  G+Q+H+   +  L+ + V+ T L+ MY  
Sbjct: 606 CWAMQLEGMRPDKATFTSLLNACSDPNRLVDGRQIHSWIAESRLENDIVMVTGLITMYAN 665

Query: 301 SGCLEDAGVAFDSL------ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
            G L +A   FD++       ++DLF +T++IT+Y Q GE   AL+ + +M    ++++ 
Sbjct: 666 CGSLNNAREIFDNIFSNSRQHHRDLFLWTSMITAYEQHGEYRKALELYEQMHSRQVEADR 725

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            T  S LN C+ ++ L  G+ +H+  ++ G   D+ V+ ++V MY KCGS D+A  VF+ 
Sbjct: 726 VTFISVLNACAHLSDLRQGQAIHARVMRRGLATDVAVANSIVFMYGKCGSFDEASIVFEK 785

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
           +  +D + W  +I  Y +HG GE+AL  FR +  +G     +TFV +LSACSH+GLIEEG
Sbjct: 786 TKHKDISLWTALIASYARHGHGEQALWIFRRLRQDGIELSNLTFVAMLSACSHVGLIEEG 845

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
            + F+S+ ++ GI P ++H +C++D+L RAG     E F++   +  N +V   LL AC 
Sbjct: 846 CEFFASMAEL-GIEPNMEHHSCLVDLLARAGHLHTAEEFLSRMPVAANTIVLTALLAACR 904

Query: 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSDI 566
            HG++E   + AEKL  L+P+ E+ YV  S+I
Sbjct: 905 VHGDVERARRVAEKLEALDPESEAPYVTLSNI 936



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 148/533 (27%), Positives = 255/533 (47%), Gaps = 8/533 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A + F  M   +VVSW  ++  Y++ G     + LF  M       +  +  ++L G   
Sbjct: 64  AVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPNSVTFVSILSGCEA 123

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKC-GLADNALKVFYRIKDPDVVAWGA 122
              ++ G+ +HA+ +         ++ SL+ MYS+C    D+ ++ F R+K  DVV+W  
Sbjct: 124 PSLLEQGRQIHALVVESSLESHVVVANSLLGMYSRCRSWEDSRMQTFARMKRRDVVSWTV 183

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I    Q G    + ++F  M      PN     S++           G  IHA++ +  
Sbjct: 184 MIGAYSQDGKFSLSIQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVVESS 243

Query: 183 FESDTLVG--NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            ES   +G  N  ++MY++ G +    + F  +  +D VSW  +   +         L++
Sbjct: 244 LESHLDIGVLNLTINMYVKCGCLDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQL 303

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +MLL+G  PN  TF+ IL  C + S +  G+Q+HA  ++ SL+ + VV  SL+ MY +
Sbjct: 304 FREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVVESSLESHVVVANSLLGMYSR 363

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQA-GEAEMALKCFRKMRLEGIKSNEFTLAS 359
               ED+   FD ++ +D  +++ II + ++       AL  +R M  EG+      L+ 
Sbjct: 364 CRSWEDSRSLFDRMSVRDSVSWSTIIMACSREDSHCRDALPLYRSMLHEGVMPKTLALSM 423

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L  C  +A L  G+L+H+  +++G   D+ V  +LV MYAKCG++ +A  VF     R 
Sbjct: 424 VLEACGSLAELKGGKLVHAHVIESGLEGDL-VGISLVNMYAKCGTVGEARKVFDRINNRS 482

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
              WN MI  Y +    E AL  FR M  EG  PD ITF+ VL+AC +   +E G+   +
Sbjct: 483 RILWNSMITAYQEKDPHE-ALHLFREMQPEGVSPDRITFMTVLNACVNAADLENGRTIHT 541

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
            I    G    ++    + ++  + G   E    + ++ +  + + W N++ A
Sbjct: 542 RIVD-SGFAADVRVATALFNMYAKCGSLGEARG-VFDSMVFRDVVSWNNMIAA 592



 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 147/532 (27%), Positives = 257/532 (48%), Gaps = 37/532 (6%)

Query: 51  KFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFY 110
           +  + T+L      G ++ G+++          LD  +    ++MY KCG  D A++ F 
Sbjct: 10  RVMIKTLLTACTKLGALEEGKLIQDRLAGTQLELDIGVRNLTINMYVKCGCLDGAVQTFA 69

Query: 111 RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC 170
           R+K  DVV+W  +I    Q G    + ++F  M      PN     S++           
Sbjct: 70  RMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQ 129

Query: 171 GESIHAVICKYGFESDTLVGNALVSMY-----MENGRVSYGSRVFEAIAHQDSVSWNALF 225
           G  IHA++ +   ES  +V N+L+ MY      E+ R+    + F  +  +D VSW  + 
Sbjct: 130 GRQIHALVVESSLESHVVVANSLLGMYSRCRSWEDSRM----QTFARMKRRDVVSWTVMI 185

Query: 226 SRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLD 285
             +         +++F +MLL+G  PN  TF+ IL  C + S +  G+Q+HA  ++ SL+
Sbjct: 186 GAYSQDGKFSLSIQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVVESSLE 245

Query: 286 GNHVVGTS--LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFR 343
            +  +G     ++MY K GCL+ A   F  +  +D+ ++T +I +Y+Q G+  ++L+ FR
Sbjct: 246 SHLDIGVLNLTINMYVKCGCLDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFR 305

Query: 344 KMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403
           +M LEG   N  T  S L+GC   + L  GR +H++ V++     + V+ +L+ MY++C 
Sbjct: 306 EMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVVESSLESHVVVANSLLGMYSRCR 365

Query: 404 SIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG-EKALEAFRMMLDEGYVPDEITFVVVL 462
           S +D+ ++F   ++RD+ SW+ +I    +       AL  +R ML EG +P  +   +VL
Sbjct: 366 SWEDSRSLFDRMSVRDSVSWSTIIMACSREDSHCRDALPLYRSMLHEGVMPKTLALSMVL 425

Query: 463 SACSHMGLIEEGK-KHFSSIKK-----IYGITPTIKHFACMIDILGRAGK-FTEIENFIT 515
            AC  +  ++ GK  H   I+      + GI+    +  C    +G A K F  I N   
Sbjct: 426 EACGSLAELKGGKLVHAHVIESGLEGDLVGISLVNMYAKC--GTVGEARKVFDRINN--- 480

Query: 516 ETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
                 + ++W +++ A          EKD  + L L  +M+   V P  I+
Sbjct: 481 -----RSRILWNSMITA--------YQEKDPHEALHLFREMQPEGVSPDRIT 519



 Score =  197 bits (502), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 109/337 (32%), Positives = 181/337 (53%), Gaps = 3/337 (0%)

Query: 143 MRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGR 202
           M    + P++ ++ +L+ A T+ G    G+ I   +     E D  V N  ++MY++ G 
Sbjct: 1   MDRRGIPPDRVMIKTLLTACTKLGALEEGKLIQDRLAGTQLELDIGVRNLTINMYVKCGC 60

Query: 203 VSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKA 262
           +    + F  +  +D VSW  +   +         L++F +MLL+G  PN  TF+ IL  
Sbjct: 61  LDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPNSVTFVSILSG 120

Query: 263 CSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV-AFDSLANKDLFA 321
           C + S +  G+Q+HA  ++ SL+ + VV  SL+ MY +    ED+ +  F  +  +D+ +
Sbjct: 121 CEAPSLLEQGRQIHALVVESSLESHVVVANSLLGMYSRCRSWEDSRMQTFARMKRRDVVS 180

Query: 322 YTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAV 381
           +T +I +Y+Q G+  ++++ FR+M LEG   N  T  S L+GC   + L  GR +H++ V
Sbjct: 181 WTVMIGAYSQDGKFSLSIQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVV 240

Query: 382 KTG--HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
           ++     LD+ V    + MY KCG +D A   F     RD  SW +MIG Y + G    +
Sbjct: 241 ESSLESHLDIGVLNLTINMYVKCGCLDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSLS 300

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
           L+ FR ML EG  P+ +TFV +LS C    L+E+G++
Sbjct: 301 LQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQ 337



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 105/232 (45%), Gaps = 12/232 (5%)

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404
           M   GI  +   + + L  C+ +  L  G+L+      T   LD+ V    + MY KCG 
Sbjct: 1   MDRRGIPPDRVMIKTLLTACTKLGALEEGKLIQDRLAGTQLELDIGVRNLTINMYVKCGC 60

Query: 405 IDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
           +D A   F     RD  SW +MIG Y + G    +L+ FR ML EG  P+ +TFV +LS 
Sbjct: 61  LDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPNSVTFVSILSG 120

Query: 465 CSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILG-----RAGKFTEIENFITETKL 519
           C    L+E+G++    I  +   +    H      +LG     R+ + + ++ F    + 
Sbjct: 121 CEAPSLLEQGRQ----IHALVVESSLESHVVVANSLLGMYSRCRSWEDSRMQTFARMKR- 175

Query: 520 TPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQG 571
             + + W  ++GA S  G   L  +   ++L LE    ++  F S +S  + 
Sbjct: 176 -RDVVSWTVMIGAYSQDGKFSLSIQLFREML-LEGTAPNSVTFVSILSGCEA 225


>gi|356551789|ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 758

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 179/540 (33%), Positives = 291/540 (53%), Gaps = 11/540 (2%)

Query: 71  QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
           Q+VH   ++ GC  + F+   LV++Y+KCG  ++A +VF  +   +VVAW  ++    Q 
Sbjct: 87  QIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDNMLRRNVVAWTTLMVGFVQN 146

Query: 131 GCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVG 190
              + A  +F  M  +   P+ + L++++ A +     + G+  HA I KY  + D  VG
Sbjct: 147 SQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLGDQFHAYIIKYHVDFDASVG 206

Query: 191 NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFK 250
           +AL S+Y + GR+    + F  I  ++ +SW +  S   D  +P +GLR+F +M+    K
Sbjct: 207 SALCSLYSKCGRLEDALKTFSRIREKNVISWTSAVSACADNGAPVKGLRLFVEMIAVDIK 266

Query: 251 PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVA 310
           PN  T    L  C  +  +  G Q+++  IK   + N  V  SL+ +Y KSGC+ +A   
Sbjct: 267 PNEFTLTSALSQCCEILSLELGTQVYSLCIKFGYESNLRVRNSLLYLYLKSGCIVEAHRL 326

Query: 311 FDSLANKDLFAYTAIITSYAQAGE-----------AEMALKCFRKMRLEGIKSNEFTLAS 359
           F+ + +  +  + A+I  +AQ  E              ALK F K+ L G+K + FTL+S
Sbjct: 327 FNRMDDASMVTWNAMIAGHAQMMELTKDNLSACHRGSEALKLFSKLNLSGMKPDLFTLSS 386

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L+ CS +  +  G  +H+  +KTG L D+ VST+L++MY+KCGSI+ A   F   + R 
Sbjct: 387 VLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYSKCGSIERASKAFLEMSTRT 446

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             +W  MI G+ +HG+ ++AL  F  M   G  P+ +TFV VLSACSH G++ +   +F 
Sbjct: 447 MIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNAVTFVGVLSACSHAGMVSQALNYFE 506

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
            ++K Y I P + H+ CM+D+  R G+  +  NFI +    P+  +W N +  C  HGN+
Sbjct: 507 IMQKKYKIKPAMDHYECMVDMFVRLGRLEQALNFIKKMNYEPSEFIWSNFIAGCKSHGNL 566

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           EL    AE+LL L+PK    YV   ++  +  R+ D S VR ++  + + K    SWI +
Sbjct: 567 ELGFYAAEQLLSLKPKDPETYVLLLNMYLSAERFEDVSRVRKMMEEEKVGKLKDWSWISI 626



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 139/499 (27%), Positives = 244/499 (48%), Gaps = 22/499 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A+RVF +M   NVV+W  L+ G+ ++   +  +H+F  M       S ++LS VL  
Sbjct: 118 MEDARRVFDNMLRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHA 177

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ++   +K G   HA  I+     D  +  +L  +YSKCG  ++ALK F RI++ +V++W
Sbjct: 178 CSSLQSLKLGDQFHAYIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRIREKNVISW 237

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            + ++     G   +  ++F  M    +KPN+F LTS +    E      G  ++++  K
Sbjct: 238 TSAVSACADNGAPVKGLRLFVEMIAVDIKPNEFTLTSALSQCCEILSLELGTQVYSLCIK 297

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS-----------RFQ 229
           +G+ES+  V N+L+ +Y+++G +    R+F  +     V+WNA+ +              
Sbjct: 298 FGYESNLRVRNSLLYLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQMMELTKDNLS 357

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
                 + L++F ++ L G KP++ T   +L  CS +  +  G+Q+HA TIK     + +
Sbjct: 358 ACHRGSEALKLFSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVI 417

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           V TSL+ MY K G +E A  AF  ++ + + A+T++IT ++Q G ++ AL  F  M L G
Sbjct: 418 VSTSLISMYSKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAG 477

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL---LDMFVSTALVAMYAKCGSID 406
           ++ N  T    L+ CS    ++       I  K   +   +D +    +V M+ + G ++
Sbjct: 478 VRPNAVTFVGVLSACSHAGMVSQALNYFEIMQKKYKIKPAMDHY--ECMVDMFVRLGRLE 535

Query: 407 DAEAVFKGSALRDTA-SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC 465
            A    K      +   W+  I G   HG  E    A   +L      D  T+V++L+  
Sbjct: 536 QALNFIKKMNYEPSEFIWSNFIAGCKSHGNLELGFYAAEQLLSLK-PKDPETYVLLLN-- 592

Query: 466 SHMGLIEEGKKHFSSIKKI 484
             M L  E  +  S ++K+
Sbjct: 593 --MYLSAERFEDVSRVRKM 609


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  338 bits (867), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 183/551 (33%), Positives = 303/551 (54%), Gaps = 6/551 (1%)

Query: 52  FSLSTVLKGFANSGYIKAGQVVHAMAIRLGCAL-DKFLSCSLVDMYSKCGLADNALKVFY 110
           F+   +L+     G   A Q+ HA A+RLG    D F S +LV  Y + G   +A + F 
Sbjct: 72  FTFPPLLRAAQGPG--TAAQL-HACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFD 128

Query: 111 RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC 170
            ++  DV AW A+++ L +     EA  +F  M    V  +   ++S++      GD+  
Sbjct: 129 EMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRAL 188

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
             ++H    K+G + +  V NA++ +Y + G +    +VF+ ++ +D V+WN++ S  + 
Sbjct: 189 ALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQ 248

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLD-GNHV 289
                  + +F  M   G  P++ T + +  A +   D+  G+ +H + ++   D G+ +
Sbjct: 249 GGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDII 308

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLE 348
            G ++VDMY K   +E A   FDS+  +D  ++  +IT Y Q G A  A+  +  M + E
Sbjct: 309 AGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHE 368

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
           G+K  + T  S L   S +  L  G  +H++++KTG  LD++V T ++ +YAKCG +D+A
Sbjct: 369 GLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEA 428

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
             +F+ +  R T  WN +I G   HG G KAL  F  M  EG  PD +TFV +L+ACSH 
Sbjct: 429 MLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHA 488

Query: 469 GLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWEN 528
           GL+++G+  F+ ++  YGI P  KH+ACM+D+ GRAG+  +  +FI    + P++ +W  
Sbjct: 489 GLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGA 548

Query: 529 LLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGI 588
           LLGAC  HGN+E+ +  ++ L EL+PK    YV  S++ A  G+W+    VR+L+  Q +
Sbjct: 549 LLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNL 608

Query: 589 KKEPSCSWIEV 599
           +K P  S IEV
Sbjct: 609 QKTPGWSSIEV 619



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/465 (27%), Positives = 228/465 (49%), Gaps = 8/465 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A R F  M   +V +WNA+L+G   +    + + LF  M          ++S+VL     
Sbjct: 123 AYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVL 182

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G       +H  A++ G   + F+  +++D+Y K G+ +   KVF  +   D+V W +I
Sbjct: 183 LGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSI 242

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+  +Q G    A ++F  MR+S V P+   L SL  A  + GD   G S+H  + + G+
Sbjct: 243 ISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGW 302

Query: 184 E-SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           +  D + GNA+V MY +  ++    R+F+++  +D+VSWN L + +       + + ++ 
Sbjct: 303 DVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYD 362

Query: 243 QML-LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            M   +G KP   TF+ +L A S L  +  G ++HA +IK  L+ +  VGT ++D+Y K 
Sbjct: 363 HMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKC 422

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G L++A + F+    +    + A+I+     G    AL  F +M+ EGI  +  T  S L
Sbjct: 423 GKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLL 482

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVS--TALVAMYAKCGSIDDAEAVFKGSALR- 418
             CS    +  GR   ++ ++T + +         +V M+ + G +DDA    +   ++ 
Sbjct: 483 AACSHAGLVDQGRNFFNM-MQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKP 541

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           D+A W  ++G    HG  E    A + + +    P  + + V++S
Sbjct: 542 DSAIWGALLGACRIHGNVEMGKVASQNLFE--LDPKNVGYYVLMS 584



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 161/332 (48%), Gaps = 14/332 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E  ++VF  M   ++V+WN++++G+ + G     + +FC M+D        +L ++   
Sbjct: 221 LEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASA 280

Query: 61  FANSGYIKAGQVVHAMAIRLGCAL-DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
            A  G I  G+ VH   +R G  + D     ++VDMY+K    + A ++F  +   D V+
Sbjct: 281 IAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVS 340

Query: 120 WGAIITCLDQQGCCQEAAKIFNLM-RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           W  +IT   Q G   EA  +++ M +   +KP Q    S++ A +  G  + G  +HA+ 
Sbjct: 341 WNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALS 400

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K G   D  VG  ++ +Y + G++     +FE    + +  WNA+ S    +    + L
Sbjct: 401 IKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKAL 460

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACS--SLSDVG---FGKQLHAHTIKHSLDGNHVVGTS 293
            +F QM  +G  P+  TF+ +L ACS   L D G   F     A+ IK      H     
Sbjct: 461 SLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPI--AKHY--AC 516

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
           +VDM+ ++G L+D   AFD + N  +   +AI
Sbjct: 517 MVDMFGRAGQLDD---AFDFIRNMPIKPDSAI 545


>gi|297817672|ref|XP_002876719.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322557|gb|EFH52978.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1005

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 191/599 (31%), Positives = 322/599 (53%), Gaps = 2/599 (0%)

Query: 4   AKRVFKSMPEL-NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           AKR+F +  E  + V WN++L+ Y+ SG   + + LF  M+      + +++ + L    
Sbjct: 216 AKRLFDASQEKGDAVLWNSILSSYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTACE 275

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
              Y K G+ +HA  ++   + + ++  +L+ MY++CG    A ++   + + DVV W +
Sbjct: 276 GFSYAKLGKEIHAAVLKSTHSFEVYVCNALIAMYARCGKMLEAGRILRLMNNADVVTWNS 335

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I    Q    +EA + F  M  +  KP++  LTS++ A+    +   G  +HA + K+G
Sbjct: 336 LIKGYVQNLMYKEALQFFCDMIAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKHG 395

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           ++S+ LVGN L+ MY +     Y  R F  +  +D +SW  + + +   +   + L++F 
Sbjct: 396 WDSNLLVGNTLIDMYSKCNLTCYMGRAFLMMHEKDLISWTTIIAGYALNDCHVEALQLFR 455

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            +  K  + +      IL+ACS L  +   K++H H ++  L  + V+   LVD+Y K  
Sbjct: 456 DVAKKRMEIDEMMLGSILRACSVLKSMLIVKEIHCHILRKGLI-DTVIQNELVDVYGKCR 514

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            +  A   F+S+  KD+ ++T++I+S A  G    A++ FR+M   G+ ++   L   L+
Sbjct: 515 NMGYASRVFESIKGKDVVSWTSMISSSALNGNENEAVELFRRMAETGLLADSVALLCILS 574

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
             + ++ L  GR +H   ++ G  L+  ++ A+V MYA CG +  A+AVF     +    
Sbjct: 575 AAASLSALKKGREIHGYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQ 634

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           +  MI  Y  HG G+ ++E F  M  E   PD I+F+ +L ACSH GL++EG++    ++
Sbjct: 635 YTSMINAYGMHGCGKASVELFNKMRHENVSPDHISFLALLYACSHAGLLDEGRRFLKIME 694

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
             Y + P  +H+ C++D+LGRA    E   F+   K  P   VW  LL AC  H   E+ 
Sbjct: 695 LEYKLEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTTEVWCALLAACRSHSEKEIG 754

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           E  A++LLELEPK   N V  S++ A QGRWND   VRA + + G++K P CSWIE+DG
Sbjct: 755 EIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDG 813



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 154/587 (26%), Positives = 275/587 (46%), Gaps = 36/587 (6%)

Query: 5   KRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANS 64
           ++VF  M +    +WNAL+  Y  +G+    + ++ +M+        +S   +LK     
Sbjct: 116 EKVFDEMRDRTAFAWNALIGAYVSNGEPASALFIYRNMRVEGVPLDLYSFPVLLKACGKL 175

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP-DVVAWGAI 123
             I++G  +H M ++LG     F+  +LV MY+K      A ++F   ++  D V W +I
Sbjct: 176 RDIRSGTELHCMLVKLGFNSTGFIVNALVSMYAKTDHLSAAKRLFDASQEKGDAVLWNSI 235

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           ++     G   E  ++F  M+ +    N + + S + A       + G+ IHA + K   
Sbjct: 236 LSSYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTACEGFSYAKLGKEIHAAVLKSTH 295

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             +  V NAL++MY   G++    R+   + + D V+WN+L   +       + L+ F  
Sbjct: 296 SFEVYVCNALIAMYARCGKMLEAGRILRLMNNADVVTWNSLIKGYVQNLMYKEALQFFCD 355

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M+  G KP+  +   ++ A   LS++  G +LHA+ IKH  D N +VG +L+DMY K   
Sbjct: 356 MIAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKHGWDSNLLVGNTLIDMYSKCNL 415

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
               G AF  +  KDL ++T II  YA       AL+ FR +  + ++ +E  L S L  
Sbjct: 416 TCYMGRAFLMMHEKDLISWTTIIAGYALNDCHVEALQLFRDVAKKRMEIDEMMLGSILRA 475

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           CS + ++   + +H   ++ G L+D  +   LV +Y KC ++  A  VF+    +D  SW
Sbjct: 476 CSVLKSMLIVKEIHCHILRKG-LIDTVIQNELVDVYGKCRNMGYASRVFESIKGKDVVSW 534

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK 482
             MI     +G   +A+E FR M + G + D +  + +LSA + +  +++G++ H   ++
Sbjct: 535 TSMISSSALNGNENEAVELFRRMAETGLLADSVALLCILSAAASLSALKKGREIHGYLLR 594

Query: 483 KIYGITPTI-----KHFACMIDILGRAGKFTEIE-------------------------- 511
           K + +  +I       +AC  D+      F  IE                          
Sbjct: 595 KGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKASVEL 654

Query: 512 -NFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKME 557
            N +    ++P+ + +  LL ACS H  +  + +   K++ELE K+E
Sbjct: 655 FNKMRHENVSPDHISFLALLYACS-HAGLLDEGRRFLKIMELEYKLE 700



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 116/242 (47%), Gaps = 12/242 (4%)

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           L+++  KS  L    V FD + ++  FA+ A+I +Y   GE   AL  +R MR+EG+  +
Sbjct: 103 LLELCGKSRALSQEKV-FDEMRDRTAFAWNALIGAYVSNGEPASALFIYRNMRVEGVPLD 161

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
            ++    L  C  +  + +G  LH + VK G     F+  ALV+MYAK   +  A+ +F 
Sbjct: 162 LYSFPVLLKACGKLRDIRSGTELHCMLVKLGFNSTGFIVNALVSMYAKTDHLSAAKRLFD 221

Query: 414 GSALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE 472
            S  + D   WN ++  Y   G   + L+ FR M   G   +  T V  L+AC      +
Sbjct: 222 ASQEKGDAVLWNSILSSYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTACEGFSYAK 281

Query: 473 EGKKHFSSIKKIYGITPTIKHFAC--MIDILGRAGKFTEIENFITETKLTPNA--LVWEN 528
            GK+  +++ K    T + + + C  +I +  R GK  E    +   +L  NA  + W +
Sbjct: 282 LGKEIHAAVLK---STHSFEVYVCNALIAMYARCGKMLEAGRIL---RLMNNADVVTWNS 335

Query: 529 LL 530
           L+
Sbjct: 336 LI 337


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 186/565 (32%), Positives = 292/565 (51%), Gaps = 36/565 (6%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLA--DNALKVFYRIKDPDVVAWGAIITCL--D 128
            HA  IR G   D + +  L  + +    A  + A KVF  I  P+   W  +I      
Sbjct: 50  THAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQPNSFTWNTLIRAYASG 109

Query: 129 QQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTL 188
               C   A +  +  ES   PN++    L++A  E      G+S+H +  K    SD  
Sbjct: 110 PDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVF 169

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG 248
           V N+L+  Y   G +    +VF  I  +D VSWN++ + F    SPD+ L +F +M  + 
Sbjct: 170 VANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESED 229

Query: 249 FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
            K +  T + +L AC+ + D+ FG+++ ++  ++ ++ N  +  +++DMY K G +EDA 
Sbjct: 230 VKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAK 289

Query: 309 VAFD-------------------------------SLANKDLFAYTAIITSYAQAGEAEM 337
             FD                               ++  KD+ A+ A+I++Y Q G+   
Sbjct: 290 RLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNE 349

Query: 338 ALKCFRKMRLE-GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALV 396
           AL  F +++L+  IK N+ TL S L+ C+ V  L  GR +HS   K G  ++ +V++AL+
Sbjct: 350 ALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALI 409

Query: 397 AMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI 456
            MY+KCG ++ A  VF     RD   W+ MIGG   HG G +A++ F  M +    P+ +
Sbjct: 410 HMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGV 469

Query: 457 TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE 516
           TF  V  ACSH GL++E +  F  ++  YGI P  KH+AC++D+LGR+G   +   FI  
Sbjct: 470 TFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEA 529

Query: 517 TKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDF 576
             + P+  VW  LLGAC  H N+ L E    +LLELEP+ +  +V  S+I A  G+W++ 
Sbjct: 530 MPIPPSTSVWGALLGACKIHANLSLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNV 589

Query: 577 SGVRALLSSQGIKKEPSCSWIEVDG 601
           S +R  +   G+KKEP CS IE+DG
Sbjct: 590 SELRKHMRVTGLKKEPGCSSIEIDG 614


>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 861

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 191/615 (31%), Positives = 330/615 (53%), Gaps = 22/615 (3%)

Query: 6   RVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSG 65
           RVF+ +PE N VSW+A++ G  ++      +  F  M+ +    S+   ++VL+  A   
Sbjct: 194 RVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALS 253

Query: 66  YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT 125
            ++ G  +HA A++   A D  +  + +DMY+KC    +A  +F + ++ +  ++ A+IT
Sbjct: 254 ELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSENLNRQSYNAMIT 313

Query: 126 CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
              Q+    +A  +F+ +  S +  ++  L+ + RA         G  I+ +  K     
Sbjct: 314 GYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYDLAIKSSLSL 373

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           D  V NA + MY +   ++   RVF+ +  +D+VSWNA+ +  +      + L +F  ML
Sbjct: 374 DVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSML 433

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
               +P+  TF  +LKAC+  S +G+G ++H+  +K  +  N  VG SL+DMY K G +E
Sbjct: 434 RSRIEPDEFTFGSVLKACTGGS-LGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIE 492

Query: 306 DAGV----------------AFDSLANKDL----FAYTAIITSYAQAGEAEMALKCFRKM 345
           +A                    + + NK L     ++ +II+ Y    ++E A   F +M
Sbjct: 493 EAEKIHSRFFQRTNVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRM 552

Query: 346 RLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSI 405
              GI  ++FT A+ L+ C+ +A+   G+ +H+  +K     D+++S+ LV MY+KCG +
Sbjct: 553 MEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYISSTLVDMYSKCGDL 612

Query: 406 DDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC 465
            D+  +F+ S  RD  +WN MI GY  HG GE+A++ F  M+ E   P+ +TF+ +L AC
Sbjct: 613 HDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRAC 672

Query: 466 SHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV 525
           +HMGLI++G ++F  +K+ YG+ P + H++ M+DILG++GK       I E     + ++
Sbjct: 673 AHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVI 732

Query: 526 WENLLGACSWH-GNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLS 584
           W  LLG C+ H  N+E+ E+    LL L+P+  S Y   S++ A  G W   S +R  + 
Sbjct: 733 WRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMR 792

Query: 585 SQGIKKEPSCSWIEV 599
              +KKEP CSW+E+
Sbjct: 793 GFKLKKEPGCSWVEL 807



 Score =  218 bits (554), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 152/581 (26%), Positives = 275/581 (47%), Gaps = 32/581 (5%)

Query: 8   FKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYI 67
           F  MP  +VVSWN++L+GY ++G+  K + +F  M     +F   + + +LK  +     
Sbjct: 95  FNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTEFDGRTFAIILKVCSCLEDT 154

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127
             G  +H + +R+GC  D   + +L+DMY+K      +L+VF  I + + V+W AII   
Sbjct: 155 SLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGC 214

Query: 128 DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDT 187
            Q      A K F  M++ +   +Q +  S++R+     + R G  +HA   K  F +D 
Sbjct: 215 VQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADG 274

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK 247
           +V  A + MY +   +     +F+   + +  S+NA+ + +   E   + L +F++++  
Sbjct: 275 IVRTATLDMYAKCDNMQDAQILFDKSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSS 334

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           G   +  +   + +AC+ +  +  G Q++   IK SL  +  V  + +DMY K   L +A
Sbjct: 335 GLGFDEISLSGVFRACALVKGLSEGLQIYDLAIKSSLSLDVCVANAAIDMYGKCQALAEA 394

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367
              FD +  +D  ++ AII ++ Q G+    L  F  M    I+ +EFT  S L  C+  
Sbjct: 395 FRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSVLKACTG- 453

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV----FKGSALRDT--- 420
            +L  G  +HS  VK+G   +  V  +L+ MY+KCG I++AE +    F+ + +  T   
Sbjct: 454 GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRTNVSGTMEE 513

Query: 421 -------------ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
                         SWN +I GYV     E A   F  M++ G  PD+ T+  VL  C++
Sbjct: 514 LEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCAN 573

Query: 468 MGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVW 526
           +     GK+ H   IKK   +   +   + ++D+  + G   +    + E  L  + + W
Sbjct: 574 LASAGLGKQIHAQVIKK--ELQSDVYISSTLVDMYSKCGDLHD-SRLMFEKSLRRDFVTW 630

Query: 527 ENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
             ++   + HG         E+ ++L  +M    + P+ ++
Sbjct: 631 NAMICGYAHHGK-------GEEAIQLFERMILENIKPNHVT 664



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 128/451 (28%), Positives = 217/451 (48%), Gaps = 25/451 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A+ +F     LN  S+NA++ GY++   G K + LF  +      F + SLS V + 
Sbjct: 290 MQDAQILFDKSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRA 349

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    +  G  ++ +AI+   +LD  ++ + +DMY KC     A +VF  ++  D V+W
Sbjct: 350 CALVKGLSEGLQIYDLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSW 409

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            AII   +Q G   E   +F  M  S ++P++F   S+++A T  G    G  IH+ I K
Sbjct: 410 NAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSVLKACT-GGSLGYGMEIHSSIVK 468

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDS--------------------VS 220
            G  S++ VG +L+ MY + G +    ++      + +                    VS
Sbjct: 469 SGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRTNVSGTMEELEKMHNKRLQEMCVS 528

Query: 221 WNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTI 280
           WN++ S +   E  +    +F +M+  G  P+  T+  +L  C++L+  G GKQ+HA  I
Sbjct: 529 WNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVI 588

Query: 281 KHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALK 340
           K  L  +  + ++LVDMY K G L D+ + F+    +D   + A+I  YA  G+ E A++
Sbjct: 589 KKELQSDVYISSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQ 648

Query: 341 CFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS--TALVAM 398
            F +M LE IK N  T  S L  C+ +  +  G L +   +K  + LD  +   + +V +
Sbjct: 649 LFERMILENIKPNHVTFISILRACAHMGLIDKG-LEYFYMMKRDYGLDPQLPHYSNMVDI 707

Query: 399 YAKCGSIDDAEAVFKGSALR-DTASWNMMIG 428
             K G +  A  + +      D   W  ++G
Sbjct: 708 LGKSGKVKRALELIREMPFEADDVIWRTLLG 738



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 130/463 (28%), Positives = 229/463 (49%), Gaps = 8/463 (1%)

Query: 50  SKFSLSTVLKGFANS-GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKV 108
           + F L+ +L+ + NS  ++ A  V   M +R   + +K     +++ Y+K      A   
Sbjct: 40  TTFVLNCLLQVYTNSRDFVSASMVFDRMPLRDVVSWNK-----MINGYAKSNNMVKASFF 94

Query: 109 FYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ 168
           F  +   DVV+W ++++   Q G   ++ ++F  M  +  + +      +++  +   D 
Sbjct: 95  FNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTEFDGRTFAIILKVCSCLEDT 154

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228
             G  IH V+ + G ++D +  +AL+ MY +  R     RVF+ I  ++SVSW+A+ +  
Sbjct: 155 SLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGC 214

Query: 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH 288
                    L+ F +M       +   +  +L++C++LS++  G QLHAH +K     + 
Sbjct: 215 VQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADG 274

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
           +V T+ +DMY K   ++DA + FD   N +  +Y A+IT Y+Q      AL  F ++   
Sbjct: 275 IVRTATLDMYAKCDNMQDAQILFDKSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSS 334

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
           G+  +E +L+     C+ V  L+ G  ++ +A+K+   LD+ V+ A + MY KC ++ +A
Sbjct: 335 GLGFDEISLSGVFRACALVKGLSEGLQIYDLAIKSSLSLDVCVANAAIDMYGKCQALAEA 394

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
             VF     RD  SWN +I  + ++G G + L  F  ML     PDE TF  VL AC+  
Sbjct: 395 FRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSVLKACTG- 453

Query: 469 GLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIE 511
           G +  G +  SSI K  G+         +ID+  + G   E E
Sbjct: 454 GSLGYGMEIHSSIVK-SGMASNSSVGCSLIDMYSKCGMIEEAE 495



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 109/407 (26%), Positives = 183/407 (44%), Gaps = 37/407 (9%)

Query: 164 ETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNA 223
           + G    G+  HA +   GF   T V N L+ +Y  +      S VF+ +  +D VSWN 
Sbjct: 18  KQGALELGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLRDVVSWNK 77

Query: 224 LFSRF--------------------------------QDYESPDQGLRIFYQMLLKGFKP 251
           + + +                                Q+ E+  + + +F  M   G + 
Sbjct: 78  MINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETL-KSIEVFVDMGRAGTEF 136

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF 311
           +  TF +ILK CS L D   G Q+H   ++   D + V  ++L+DMY K     ++   F
Sbjct: 137 DGRTFAIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRVF 196

Query: 312 DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLA 371
             +  K+  +++AII    Q     +ALK F++M+      ++   AS L  C+ ++ L 
Sbjct: 197 QGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELR 256

Query: 372 NGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV 431
            G  LH+ A+K+    D  V TA + MYAKC ++ DA+ +F  S   +  S+N MI GY 
Sbjct: 257 LGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSENLNRQSYNAMITGYS 316

Query: 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS-SIKKIYGITPT 490
           +   G KAL  F  ++  G   DEI+   V  AC+ +  + EG + +  +IK    +   
Sbjct: 317 QEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYDLAIKSSLSLDVC 376

Query: 491 IKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           + + A  ID+ G+     E      E +   +A+ W  ++ A   +G
Sbjct: 377 VANAA--IDMYGKCQALAEAFRVFDEMR-RRDAVSWNAIIAAHEQNG 420



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 109/262 (41%), Gaps = 32/262 (12%)

Query: 263 CSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAY 322
           C+    +  GKQ HAH I         V   L+ +Y  S     A + FD +  +D+ ++
Sbjct: 16  CAKQGALELGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLRDVVSW 75

Query: 323 TAIITSYA-------------------------------QAGEAEMALKCFRKMRLEGIK 351
             +I  YA                               Q GE   +++ F  M   G +
Sbjct: 76  NKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTE 135

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            +  T A  L  CS +   + G  +H + V+ G   D+  ++AL+ MYAK     ++  V
Sbjct: 136 FDGRTFAIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRV 195

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F+G   +++ SW+ +I G V++ L   AL+ F+ M        +  +  VL +C+ +  +
Sbjct: 196 FQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSEL 255

Query: 472 EEGKK-HFSSIKKIYGITPTIK 492
             G + H  ++K  +     ++
Sbjct: 256 RLGGQLHAHALKSDFAADGIVR 277



 Score = 46.2 bits (108), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 43/201 (21%), Positives = 73/201 (36%), Gaps = 33/201 (16%)

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+    L  G+  H+  + +G     FV   L+ +Y        A  VF    LRD  SW
Sbjct: 16  CAKQGALELGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLRDVVSW 75

Query: 424 NMMIGGYVK-------------------------------HGLGEKALEAFRMMLDEGYV 452
           N MI GY K                               +G   K++E F  M   G  
Sbjct: 76  NKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTE 135

Query: 453 PDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIEN 512
            D  TF ++L  CS +     G +    + ++ G    +   + ++D+  +  +F E   
Sbjct: 136 FDGRTFAIILKVCSCLEDTSLGMQIHGVVVRV-GCDTDVVAASALLDMYAKGKRFVESLR 194

Query: 513 FITETKLTPNALVWENLLGAC 533
            + +     N++ W  ++  C
Sbjct: 195 -VFQGIPEKNSVSWSAIIAGC 214


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 181/535 (33%), Positives = 296/535 (55%), Gaps = 1/535 (0%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +K  Q +HA  I  G   + FLS SL++ Y  CGL  +A ++F+     +VV+W  +I+ 
Sbjct: 37  LKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISG 96

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
           L +  C  EA  +F  M   + KPN   ++S++ A    G  R  +S+H    + GFE +
Sbjct: 97  LAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGN 156

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             V  ALV MY + G +    ++FE+++ ++ V+WNA+ S + D+   ++ + +F  M  
Sbjct: 157 VFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRR 216

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           KG   +  T + ++ A  S+  +  G  +H   I+   + +  + T+L+D+Y    C++D
Sbjct: 217 KGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDD 276

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR-LEGIKSNEFTLASCLNGCS 365
           A   F  ++ KD+ A+T ++T ++     + A+K F KM  ++ +K +   L   L+ CS
Sbjct: 277 AHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCS 336

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
               L  GR +H++A+KT    ++FV +A++ MYA CG+++DA+  F G   +D   WN 
Sbjct: 337 HSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNA 396

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIY 485
           MI G   +G G  A++ F  M   G  PDE TFV VL ACSH G++ EG + F  + K  
Sbjct: 397 MIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTS 456

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKD 545
            + P ++H+AC+IDILGRAG+     +FI      P+  V+  LLGAC  HGNI+L  + 
Sbjct: 457 HVIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEI 516

Query: 546 AEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           ++K+ E+EP     YV  S++ A  G W      RA L S+ +KK+P  S IE++
Sbjct: 517 SQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRMKKDPGFSSIEIN 571



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 135/467 (28%), Positives = 231/467 (49%), Gaps = 13/467 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AK++F   P  NVVSW  L++G A++    + + +F  M     K +  ++S+VL  FAN
Sbjct: 75  AKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFAN 134

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G I+  + VH   +R G   + F+  +LVDMYSK G    A ++F  + + +VV W AI
Sbjct: 135 LGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAI 194

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           ++     G  +EA  +FNLMR   +  + + + SL+ A+   G  + G  IH  I + G+
Sbjct: 195 VSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGY 254

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E+D  +  AL+ +Y+ +  V    RVF  ++ +D  +W  + + F      D+ ++ F +
Sbjct: 255 ENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNK 314

Query: 244 ML-LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           ML ++  K +    + IL +CS    +  G+++HA  IK     N  VG++++DMY   G
Sbjct: 315 MLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCG 374

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            LEDA   F  +  KD+  + A+I      G    A+  F +M+  G+  +E T  S L 
Sbjct: 375 NLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLY 434

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTA-LVAMYAKCGSIDDAEAVFKGSALR-DT 420
            CS    +  G  +    VKT H++      A ++ +  + G +D A +       + D 
Sbjct: 435 ACSHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDF 494

Query: 421 ASWNMMIGGYVKHG---LG-EKALEAFRMMLDEGYVPDEITFVVVLS 463
             ++ ++G    HG   LG E + + F M       P++  + V+LS
Sbjct: 495 DVYSTLLGACRIHGNIKLGHEISQKIFEME------PNDAGYYVLLS 535



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 159/317 (50%), Gaps = 11/317 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M +A+++F+SM E NVV+WNA+++GY++ G  ++ + LF  M+        +++ +++  
Sbjct: 173 MGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPA 232

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             + G ++ G  +H   IR G   DK +  +L+D+Y      D+A +VF  +   DV AW
Sbjct: 233 SLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAW 292

Query: 121 GAIITCLDQQGCCQEAAKIFN-LMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
             ++T          A K FN ++   ++K +   L  ++ + + +G  + G  +HA+  
Sbjct: 293 TLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAI 352

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K  F ++  VG+A++ MY   G +    R F  +  +D V WNA+ +           + 
Sbjct: 353 KTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAID 412

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT-----SL 294
           +F QM   G  P+  TF+ +L ACS    V  G Q+  H +K S    HV+        +
Sbjct: 413 LFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTS----HVIPNLQHYACV 468

Query: 295 VDMYDKSGCLEDAGVAF 311
           +D+  ++G L DA  +F
Sbjct: 469 IDILGRAGQL-DAAYSF 484



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 108/209 (51%)

Query: 266 LSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
           L D+   +Q+HA  I   L  N  +  SL++ Y   G L DA   F     K++ ++T +
Sbjct: 34  LKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTIL 93

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH 385
           I+  A+      A+  FR+M +   K N  T++S L   + +  +   + +H   V+ G 
Sbjct: 94  ISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGF 153

Query: 386 LLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRM 445
             ++FV TALV MY+K G +  A  +F+  + R+  +WN ++ GY  HG  E+A++ F +
Sbjct: 154 EGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNL 213

Query: 446 MLDEGYVPDEITFVVVLSACSHMGLIEEG 474
           M  +G + D  T + ++ A   +G ++ G
Sbjct: 214 MRRKGLLVDFYTIMSLIPASLSVGCLQVG 242


>gi|222625199|gb|EEE59331.1| hypothetical protein OsJ_11408 [Oryza sativa Japonica Group]
          Length = 691

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 188/566 (33%), Positives = 303/566 (53%), Gaps = 2/566 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK-GFA 62
           A+R+F  MPE N+VS+  L+  +A+ GD +    LF  ++    + ++F L+T+LK   A
Sbjct: 115 ARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIA 174

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
                 AG V H+ A +LG   + F+   L+D YS C L  +A  VF  I   D V W A
Sbjct: 175 MDAAGLAGGV-HSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTA 233

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +++C  +  C + A ++F+ MR S  KPN F LTS+++A         G+ IH    K  
Sbjct: 234 MVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTL 293

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            +++  VG AL+ MY + G +      FE I + D +  + + SR+      +Q   +F 
Sbjct: 294 NDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFL 353

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +++     PN  +   +L+AC+++  + FGKQ+H H IK   + +  VG +L+D Y K  
Sbjct: 354 RLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCN 413

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            ++ +   F SL + +  ++  I+  ++Q+G  E AL  F +M+   +   + T +S L 
Sbjct: 414 DMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLR 473

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+  A++ +   +H    K+    D  +  +L+  YAKCG I DA  VF+    RD  S
Sbjct: 474 ACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIIS 533

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN +I GY  HG    ALE F  M       ++ITFV +LS CS  GL+  G   F S++
Sbjct: 534 WNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMR 593

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
             +GI P+++H+ C++ +LGRAG+  +   FI +    P+A+VW  LL +C  H N+ L 
Sbjct: 594 IDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALG 653

Query: 543 EKDAEKLLELEPKMESNYVFPSDISA 568
              AEK+LE+EP+ E+ YV  S++ A
Sbjct: 654 RFSAEKILEIEPQDETTYVLLSNMYA 679



 Score =  234 bits (598), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 154/521 (29%), Positives = 260/521 (49%), Gaps = 17/521 (3%)

Query: 52  FSLSTVLKGFANSGYIKAGQVVHAMAIRLGCA--LDKFLSCSLVDMYSKCGLADNALKVF 109
           F+ +  L+G    G  + G+ VH   +R G    LD F +  L++MY K G   +A ++F
Sbjct: 60  FACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLF 119

Query: 110 YRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
            R+ + ++V++  ++    Q+G  + AA +F  +R    + NQFVLT++++         
Sbjct: 120 DRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAG 179

Query: 170 CGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
               +H+   K G + +  VG+ L+  Y     VS    VF  I  +D+V W A+ S + 
Sbjct: 180 LAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYS 239

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
           + + P+   R+F +M + G KPN      +LKA   L  V  GK +H   IK   D    
Sbjct: 240 ENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPH 299

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           VG +L+DMY K G ++DA +AF+ +   D+   + +I+ YAQ+ + E A + F ++    
Sbjct: 300 VGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSS 359

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           +  NE++L+S L  C+ +  L  G+ +H+ A+K GH  D+FV  AL+  YAKC  +D + 
Sbjct: 360 VLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSL 419

Query: 410 AVFKGSALRDT--ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
            +F  S+LRD    SWN ++ G+ + GLGE+AL  F  M        ++T+  VL AC+ 
Sbjct: 420 KIF--SSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACAS 477

Query: 468 MGLIEE-GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVW 526
              I   G+ H S  K  +     I +   +ID   + G   +    + +  +  + + W
Sbjct: 478 TASIRHAGQIHCSIEKSTFNNDTVIGN--SLIDTYAKCGYIRDALK-VFQHLMERDIISW 534

Query: 527 ENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
             ++   + HG        A   LEL  +M  + V  +DI+
Sbjct: 535 NAIISGYALHGQ-------AADALELFDRMNKSNVESNDIT 568



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 119/228 (52%), Gaps = 2/228 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ + ++F S+ + N VSWN ++ G+++SG G++ + +FC M+  +   ++ + S+VL+ 
Sbjct: 415 MDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRA 474

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A++  I+    +H    +     D  +  SL+D Y+KCG   +ALKVF  + + D+++W
Sbjct: 475 CASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISW 534

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI-HAVIC 179
            AII+     G   +A ++F+ M +S+V+ N     +L+   + TG    G S+  ++  
Sbjct: 535 NAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRI 594

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDS-VSWNALFS 226
            +G +        +V +    GR++   +    I    S + W AL S
Sbjct: 595 DHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLS 642



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 2/112 (1%)

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL--LDMFVSTALVAMYAKCGSIDDAEA 410
           + F  A  L GC        GR +H   V+ G +  LD+F +  L+ MY K G +  A  
Sbjct: 58  DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARR 117

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVL 462
           +F     R+  S+  ++  + + G  E A   FR +  EG+  ++     +L
Sbjct: 118 LFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTML 169


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 198/605 (32%), Positives = 318/605 (52%), Gaps = 24/605 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A ++F  MPE N+VSWN+++  ++++GD    M       D+       ++ TVL   A 
Sbjct: 241 ALKLFDIMPERNLVSWNSMIRVFSDNGDDGAFM------PDVA------TVVTVLPVCAR 288

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              I  G+ VH  A++L    +  ++ +L+DMYSK G   ++  +F    + +VV+W  +
Sbjct: 289 EREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTM 348

Query: 124 ITCLDQQGCCQEAAKIFNLMRE-----SSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +     +G   +    F+L+R+       VK ++  + + V    +       + +H   
Sbjct: 349 VGGFSAEG---DIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESVLPSLKELHCYS 405

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K  F  D L+ NA V+ Y + G +SY  RVF  I  +   SWNAL   +     P   L
Sbjct: 406 LKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSL 465

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
               QM   G  P+  T   +L ACS L  +  GK++H   I++ L+ +  V  S++ +Y
Sbjct: 466 DAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLY 525

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
              G L    V FD++ +  L ++  +IT + Q G  E AL  FR+M L GI+    ++ 
Sbjct: 526 IHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMM 585

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLD--MFVSTALVAMYAKCGSIDDAEAVFKGSA 416
           +    CS + +L  GR  H+ A+K  HLL+   F++ +++ MYAK G+I  +  VF G  
Sbjct: 586 TVFGACSLLPSLRLGREAHAYALK--HLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLK 643

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            +  ASWN MI GY  HG  ++A++ F  M   G  PD++TF+ VL+AC+H GL+ EG +
Sbjct: 644 EKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLR 703

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
           +   +K  +G+ P +KH+AC+ID+LGRAG+         E    P+  +W +LL  C  H
Sbjct: 704 YLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNSLLSWCRIH 763

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSW 596
            N+E+ EK A KL  LEP+   NYV  S++ A  G+W+D   VR  +    ++K+  CSW
Sbjct: 764 QNLEMGEKVAAKLFVLEPEKPENYVLLSNLYAGLGKWDDVRQVRQRMKEMSLRKDAGCSW 823

Query: 597 IEVDG 601
           IE++G
Sbjct: 824 IELNG 828



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/463 (27%), Positives = 226/463 (48%), Gaps = 39/463 (8%)

Query: 39  FCSMKDMEKKFS-------------------KFSLSTVLKGFANSGYIKAGQVVHAM--- 76
           FC   D++K F                    + +L  +L+       I+ G+ +H +   
Sbjct: 53  FCETGDLDKSFRVVQEFAGDDESSSDVFLLVREALGLLLQASGKRKDIEMGRKIHHLVSG 112

Query: 77  AIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEA 136
           + RL    D  L   ++ MY+ CG  D++   F  ++  ++  W A+I+   +     E 
Sbjct: 113 STRLRS--DDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHEV 170

Query: 137 AKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVS 195
            ++F  ++ ++ + P+ F    +++A     D   G ++H ++ K G   D  VGNALVS
Sbjct: 171 LEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVS 230

Query: 196 MYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCT 255
            Y  +G VS   ++F+ +  ++ VSWN++   F D  + D G           F P++ T
Sbjct: 231 FYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSD--NGDDG----------AFMPDVAT 278

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
            + +L  C+   ++G GK +H   +K SLD   VV  +L+DMY K GC+ D+ + F    
Sbjct: 279 VVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNN 338

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRL--EGIKSNEFTLASCLNGCSPVATLANG 373
           NK++ ++  ++  ++  G+        R+M    E +K++E T+ + +  C   + L + 
Sbjct: 339 NKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESVLPSL 398

Query: 374 RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKH 433
           + LH  ++K   + D  ++ A VA YAKCGS+  A+ VF G   +   SWN +IGGY + 
Sbjct: 399 KELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQS 458

Query: 434 GLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
                +L+A   M + G +PD  T   +LSACS +  +  GK+
Sbjct: 459 SDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKE 501



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 121/510 (23%), Positives = 207/510 (40%), Gaps = 61/510 (11%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A+RVF  +    + SWNAL+ GYA+S D +  +     MK+       F++ ++L  
Sbjct: 430 LSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSA 489

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    ++ G+ VH   IR     D F+  S++ +Y  CG       +F  ++D  +V+W
Sbjct: 490 CSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSW 549

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +IT   Q G  + A  +F  M    ++P    + ++  A +     R G   HA   K
Sbjct: 550 NTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAYALK 609

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +  E +  +  +++ MY +NG ++  S+VF  +  + + SWNA+   +  +    + +++
Sbjct: 610 HLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGMHGRAKEAIKL 669

Query: 241 FYQMLLKGFKPNMCTFIVILKAC--SSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           F +M   G  P+  TF+ +L AC  S L   G  + L        L  N      ++DM 
Sbjct: 670 FEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGL-RYLDQMKSSFGLKPNLKHYACVIDML 728

Query: 299 DKSGCLEDA-GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFT 356
            ++G L++A  VA +     D+  + ++++        EM  K   K+  LE  K   + 
Sbjct: 729 GRAGQLDNALRVAAEMSEEPDVGIWNSLLSWCRIHQNLEMGEKVAAKLFVLEPEKPENYV 788

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV---FK 413
           L S L                                     YA  G  DD   V    K
Sbjct: 789 LLSNL-------------------------------------YAGLGKWDDVRQVRQRMK 811

Query: 414 GSALRDTA--SWNMMIGGYVKHGLGEKALEAFR-----------MMLDEGYVPDEITFVV 460
             +LR  A  SW  + G      +GE+ L+ F             +   GY PD  +   
Sbjct: 812 EMSLRKDAGCSWIELNGKVFSFVVGERFLDGFEEIKSLWSILEMKIWKMGYRPDTSS--- 868

Query: 461 VLSACSHMGLIEEGKKHFSSIKKIYGITPT 490
           V    S    IE+ + H   +   YG+  T
Sbjct: 869 VQHDLSEEEKIEQLRGHSEKLAITYGLIKT 898


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  337 bits (865), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 208/635 (32%), Positives = 315/635 (49%), Gaps = 51/635 (8%)

Query: 15  NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVH 74
            V  WN L+      G  + V+ L+  M+ +  +   ++   VLK        + G  VH
Sbjct: 90  TVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVH 149

Query: 75  AMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP---DVVAWGAIITCLDQQG 131
           A+    G   + F+   LV MY +CG  +NA +VF  +++    D+V+W +I+    Q G
Sbjct: 150 AVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGG 209

Query: 132 CCQEAAKIFNLMRES-SVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVG 190
               A K+F  M E   ++P+   L +++ A    G    G+ +H    + G   D  VG
Sbjct: 210 DSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVG 269

Query: 191 NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS------RFQD-------------- 230
           NA+V MY + G +   ++VFE +  +D VSWNA+ +      RF D              
Sbjct: 270 NAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIE 329

Query: 231 ------------YESPDQG---LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL 275
                       Y     G   L +F QM L G +PN+ T + +L  C+    +  GK+ 
Sbjct: 330 LNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKET 389

Query: 276 HAHTIKH--SLDGNH-----VVGTSLVDMYDKSGCLEDAGVAFDSLANKD--LFAYTAII 326
           H H IK   +LD N      +V  +L+DMY K    + A   FD +  KD  +  +T +I
Sbjct: 390 HCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLI 449

Query: 327 TSYAQAGEAEMALKCFRKMRLEG--IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
              AQ GEA  AL+ F +M      +  N FT++  L  C+ +  L  GR +H+  ++  
Sbjct: 450 GGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNR 509

Query: 385 HLLDM-FVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF 443
               M FV+  L+ MY+K G +D A  VF     R+  SW  ++ GY  HG GE+AL+ F
Sbjct: 510 FESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIF 569

Query: 444 RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGR 503
             M   G VPD +TFVVVL ACSH G++++G  +F+ + K +G+ P  +H+ACM+D+L R
Sbjct: 570 YEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSR 629

Query: 504 AGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFP 563
           AG+  E    I    + P   VW  LL AC  + N+EL E  A +LLELE   + +Y   
Sbjct: 630 AGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLL 689

Query: 564 SDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           S+I A    W D + +R L+ + GIKK P CSW++
Sbjct: 690 SNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQ 724



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 137/494 (27%), Positives = 223/494 (45%), Gaps = 56/494 (11%)

Query: 2   ELAKRVFKSMPELNV---VSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTV 57
           E A++VF  M E  V   VSWN+++  Y + GD  + M +F  M +D+  +    SL  V
Sbjct: 178 ENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNV 237

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
           L   A+ G    G+ VH  A+R G   D F+  ++VDMY+KCG+ + A KVF R+K  DV
Sbjct: 238 LPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDV 297

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSV----------------------------- 148
           V+W A++T   Q G   +A  +F  +RE  +                             
Sbjct: 298 VSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQ 357

Query: 149 ------KPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE-------SDTLVGNALVS 195
                 +PN   L SL+      G    G+  H    K+           D +V NAL+ 
Sbjct: 358 MRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALID 417

Query: 196 MYMENGRVSYGSRVFEAIAHQDS--VSWNALFSRFQDYESPDQGLRIFYQMLLKG--FKP 251
           MY +         +F+ I  +D   V+W  L      +   ++ L +F QML       P
Sbjct: 418 MYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMP 477

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGTSLVDMYDKSGCLEDAGVA 310
           N  T    L AC+ L  + FG+Q+HA+ +++  +   + V   L+DMY KSG ++ A V 
Sbjct: 478 NAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVV 537

Query: 311 FDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATL 370
           FD++  ++  ++T+++T Y   G  E AL+ F +M+  G+  +  T    L  CS    +
Sbjct: 538 FDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMV 597

Query: 371 ANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT-ASWNMMIG 428
             G    + +    G +        +V + ++ G +D+A  + +G  ++ T A W  ++ 
Sbjct: 598 DQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLS 657

Query: 429 G---YVKHGLGEKA 439
               Y    LGE A
Sbjct: 658 ACRVYANVELGEYA 671



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 2/127 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+ VF +M + N VSW +L+ GY   G G++ + +F  M+ +       +   VL  
Sbjct: 531 VDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYA 590

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            ++SG +  G    + M    G          +VD+ S+ G  D A+++   +   P   
Sbjct: 591 CSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPA 650

Query: 119 AWGAIIT 125
            W A+++
Sbjct: 651 VWVALLS 657


>gi|297828580|ref|XP_002882172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297328012|gb|EFH58431.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 638

 Score =  337 bits (865), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 186/595 (31%), Positives = 314/595 (52%), Gaps = 8/595 (1%)

Query: 11  MPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAG 70
           M +  +  WN LL   +     ++VM  F  M   E+K   F+L   LK       +K G
Sbjct: 1   MTKRTLYQWNTLLKSLSRDKHWEQVMCHFSQMFRDEEKPDNFTLPVALKACGELREVKYG 60

Query: 71  QVVHAMA---IRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127
           +++H      + LG   D ++  SL+ MY KCG    AL++F  ++ PD+V W ++++  
Sbjct: 61  EMIHGFLKKNVTLGS--DLYVGSSLIYMYVKCGRMTEALRMFNELEKPDIVTWSSMVSGF 118

Query: 128 DQQGCCQEAAKIFNLMRESS-VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
           ++ G   +A + F  M  +S V P++  L +LV A T+  + R G  +H  + + GF +D
Sbjct: 119 EKNGSPYQAVEFFRRMATASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVMRRGFSND 178

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             + N+L++ Y ++        +F+ +A +D +SW+ + + +    +  + LR+F +M+ 
Sbjct: 179 LSLVNSLLNCYAKSRAFKEAVNLFKMMAEKDVISWSTVIACYVQNGAAAEALRVFNEMID 238

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
            G +PN+ T + +L+AC++ +D+  G++ H   I+  L+    V T+LVDMY K    E+
Sbjct: 239 DGTEPNVATVLCVLQACAAANDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEE 298

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG-IKSNEFTLASCLNGCS 365
           A   F  +  KD+ ++ A+I+ +   G A  +++ F  M LE   + +   +   L  CS
Sbjct: 299 AYAVFSRIPKKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMLKVLGSCS 358

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
            +  L      HS  +K G   + F+  +LV +Y++CGS+ +A  VF   AL+DT  W  
Sbjct: 359 ELGFLKQAECFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNEIALKDTVVWTS 418

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYV-PDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
           +I GY  HG G KALE F  M+    V P+E+TF+ +LSACSH GLI EG + F  +   
Sbjct: 419 LITGYGIHGKGTKALETFNHMVRSSEVKPNEVTFLSILSACSHAGLIHEGLRIFELMVND 478

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEK 544
           Y + P ++H+A ++D+LGR G+             +P   +   LLGAC  H N E+ E 
Sbjct: 479 YRLAPNLEHYAVLVDLLGRVGELDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAET 538

Query: 545 DAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            A++L ELE      Y+  S++   +G W +   +R  +  +GIKK  + S IE+
Sbjct: 539 VAKQLFELESNHAGYYMLMSNMYGVKGEWENVEKLRNSVKQRGIKKGLAESLIEI 593



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 128/447 (28%), Positives = 212/447 (47%), Gaps = 11/447 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDM-EKKFSKFSLSTVLK 59
           M  A R+F  + + ++V+W+++++G+ ++G   + +  F  M    +    + +L T++ 
Sbjct: 93  MTEALRMFNELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMATASDVTPDRVTLITLVS 152

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
                   + G+ VH   +R G + D  L  SL++ Y+K      A+ +F  + + DV++
Sbjct: 153 ACTKLSNSRLGRCVHGFVMRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMMAEKDVIS 212

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  +I C  Q G   EA ++FN M +   +PN   +  +++A     D   G   H +  
Sbjct: 213 WSTVIACYVQNGAAAEALRVFNEMIDDGTEPNVATVLCVLQACAAANDLEQGRKTHELAI 272

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           + G E++  V  ALV MYM+         VF  I  +D VSW AL S F       + + 
Sbjct: 273 RKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPKKDVVSWVALISGFTLNGMAHRSIE 332

Query: 240 IFYQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQ---LHAHTIKHSLDGNHVVGTSLV 295
            F  MLL+   +P+    I++LK   S S++GF KQ    H++ IK+  D N  +G SLV
Sbjct: 333 EFSIMLLENNTRPDA---ILMLKVLGSCSELGFLKQAECFHSYVIKYGFDSNPFIGASLV 389

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNE 354
           ++Y + G L +A   F+ +A KD   +T++IT Y   G+   AL+ F  M R   +K NE
Sbjct: 390 ELYSRCGSLGNASKVFNEIALKDTVVWTSLITGYGIHGKGTKALETFNHMVRSSEVKPNE 449

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA-LVAMYAKCGSIDDAEAVFK 413
            T  S L+ CS    +  G  +  + V    L       A LV +  + G +D A  + K
Sbjct: 450 VTFLSILSACSHAGLIHEGLRIFELMVNDYRLAPNLEHYAVLVDLLGRVGELDTAIEITK 509

Query: 414 GSALRDTAS-WNMMIGGYVKHGLGEKA 439
                 T      ++G    H  GE A
Sbjct: 510 RMPFSPTPQILGTLLGACRIHQNGEMA 536


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 189/552 (34%), Positives = 286/552 (51%), Gaps = 34/552 (6%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDM--YSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
           +H+  I+ G    +F    L++    S  G    AL +F  I+ P+   W  +I      
Sbjct: 51  IHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLS 110

Query: 131 GCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVG 190
                A   +  M    V+PN +    L+++  + G  + G+ IH  + K G ESD  V 
Sbjct: 111 SSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVH 170

Query: 191 NALVSMYMENGRVSYGS-------------------------------RVFEAIAHQDSV 219
            +L++MY +NG + Y                                 R+FE I  +D+V
Sbjct: 171 TSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAV 230

Query: 220 SWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHT 279
           SWNA+ + +      ++ L  F +M      PN  T + +L AC+    +  G  + +  
Sbjct: 231 SWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWI 290

Query: 280 IKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMAL 339
             H L  N  +  +L+DMY K G L+ A   F+ +  KD+ ++  +I  Y+     + AL
Sbjct: 291 EDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEAL 350

Query: 340 KCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHS-IAVKTGHLLDMFVSTALVAM 398
             FRKM+   ++ N+ T  S L  C+ +  L  G+ +H+ I  K   L +  + T+L+ M
Sbjct: 351 ALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDM 410

Query: 399 YAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITF 458
           YAKCG+I+ A+ VF G   +   SWN MI G   HG    ALE FR M DEG+ PD+ITF
Sbjct: 411 YAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITF 470

Query: 459 VVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK 518
           V VLSACSH GL+E G++ FSS+ + Y I+P ++H+ CMID+LGRAG F E E  +   +
Sbjct: 471 VGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNME 530

Query: 519 LTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSG 578
           + P+  +W +LLGAC  HGN+EL E  A+ L ELEP+    YV  S+I AT GRW+D + 
Sbjct: 531 MKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVAR 590

Query: 579 VRALLSSQGIKK 590
           +R  L+ +G+KK
Sbjct: 591 IRTKLNDKGMKK 602



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 134/475 (28%), Positives = 222/475 (46%), Gaps = 47/475 (9%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           +F+S+ + N   WN ++ G + S      +  +  M     + + ++   +LK  A  G 
Sbjct: 88  LFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGA 147

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCG-------------------------- 100
            + G+ +H   ++LG   D F+  SL++MY++ G                          
Sbjct: 148 TQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITG 207

Query: 101 -----LADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVL 155
                  D+A ++F  I   D V+W A+I    Q G  +EA   F  M+ ++V PN+  +
Sbjct: 208 YTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTM 267

Query: 156 TSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH 215
            +++ A  ++G    G  + + I  +G  S+  + NAL+ MY + G +     +FE I  
Sbjct: 268 VTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICE 327

Query: 216 QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL 275
           +D +SWN +   +    S  + L +F +M     +PN  TF+ IL AC+ L  +  GK +
Sbjct: 328 KDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWI 387

Query: 276 HAHTIKHSLD-GNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGE 334
           HA+  K  L   N  + TSL+DMY K G +E A   F  +  K L ++ A+I+  A  G 
Sbjct: 388 HAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGH 447

Query: 335 AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA 394
           A MAL+ FR+MR EG + ++ T    L+ CS    +  GR   S  V+     D  +S  
Sbjct: 448 ANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVE-----DYDISPK 502

Query: 395 L------VAMYAKCGSIDDAEAVFKGSALR-DTASWNMMIGGYVKHG---LGEKA 439
           L      + +  + G  D+AEA+ K   ++ D A W  ++G    HG   LGE A
Sbjct: 503 LQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFA 557



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 125/431 (29%), Positives = 204/431 (47%), Gaps = 45/431 (10%)

Query: 172 ESIHAVICKYGFESDTLVGNALVSM--YMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
           + IH+ I K G  +     + L+        G +SY   +FE+I   +   WN +     
Sbjct: 49  KQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNS 108

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
              SP   +  + +MLL G +PN  TF  +LK+C+ +     GKQ+H H +K  L+ +  
Sbjct: 109 LSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPF 168

Query: 290 VGTSLVDMYDKS-------------------------------GCLEDAGVAFDSLANKD 318
           V TSL++MY ++                               GCL+DA   F+ +  +D
Sbjct: 169 VHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRD 228

Query: 319 LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHS 378
             ++ A+I  YAQ+G  E AL  F++M+   +  NE T+ + L+ C+   +L  G  + S
Sbjct: 229 AVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRS 288

Query: 379 IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEK 438
                G   ++ +  AL+ MY+KCG +D A  +F+G   +D  SWN+MIGGY      ++
Sbjct: 289 WIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKE 348

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI-KKIYGITPTIKHFACM 497
           AL  FR M      P+++TFV +L AC+++G ++ GK   + I KK  G+T T   +  +
Sbjct: 349 ALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNT-SLWTSL 407

Query: 498 IDILGRAGKFTEIENFITETKLTPNAL-VWENLLGACSWHGNIELDEKDAEKLLELEPKM 556
           ID+  + G     +      K  P +L  W  ++   + HG+       A   LEL  +M
Sbjct: 408 IDMYAKCGNIEAAKQVFAGMK--PKSLGSWNAMISGLAMHGH-------ANMALELFRQM 458

Query: 557 ESNYVFPSDIS 567
                 P DI+
Sbjct: 459 RDEGFEPDDIT 469



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/318 (30%), Positives = 159/318 (50%), Gaps = 16/318 (5%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R+F+ +P  + VSWNA++ GYA+SG  ++ +  F  MK      ++ ++ TVL   A 
Sbjct: 217 ARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQ 276

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           SG ++ G  V +     G   +  L  +L+DMYSKCG  D A  +F  I + D+++W  +
Sbjct: 277 SGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVM 336

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI-CKYG 182
           I         +EA  +F  M++S+V+PN     S++ A    G    G+ IHA I  K+ 
Sbjct: 337 IGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFL 396

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
             ++T +  +L+ MY + G +    +VF  +  +   SWNA+ S    +   +  L +F 
Sbjct: 397 GLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFR 456

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           QM  +GF+P+  TF+ +L ACS    V  G+Q                 +S+V+ YD S 
Sbjct: 457 QMRDEGFEPDDITFVGVLSACSHAGLVELGRQCF---------------SSMVEDYDISP 501

Query: 303 CLEDAGVAFDSLANKDLF 320
            L+  G   D L    LF
Sbjct: 502 KLQHYGCMIDLLGRAGLF 519



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 151/344 (43%), Gaps = 45/344 (13%)

Query: 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS--GCLEDAGVAFDSL 314
           + +L  C S  ++   KQ+H+  IK  L       + L++    S  G L  A + F+S+
Sbjct: 36  LTLLSTCKSFQNL---KQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESI 92

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
              + F +  +I   + +     A+  + +M L G++ N +T    L  C+ V     G+
Sbjct: 93  EQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGK 152

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL----------------- 417
            +H   +K G   D FV T+L+ MYA+ G +  AE VF  S+L                 
Sbjct: 153 QIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRG 212

Query: 418 --------------RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
                         RD  SWN MI GY + G  E+AL  F+ M      P+E T V VLS
Sbjct: 213 CLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLS 272

Query: 464 ACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNA 523
           AC+  G +E G    S I+  +G+   ++    +ID+  + G   +  +   E     + 
Sbjct: 273 ACAQSGSLELGNWVRSWIED-HGLGSNLRLVNALIDMYSKCGDLDKARDLF-EGICEKDI 330

Query: 524 LVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           + W  ++G  S H N        ++ L L  KM+ + V P+D++
Sbjct: 331 ISWNVMIGGYS-HMN------SYKEALALFRKMQQSNVEPNDVT 367



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 86/167 (51%), Gaps = 1/167 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+ +F+ + E +++SWN ++ GY+     ++ + LF  M+    + +  +  ++L  
Sbjct: 315 LDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPA 374

Query: 61  FANSGYIKAGQVVHAMAIRLGCAL-DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
            A  G +  G+ +HA   +    L +  L  SL+DMY+KCG  + A +VF  +K   + +
Sbjct: 375 CAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGS 434

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
           W A+I+ L   G    A ++F  MR+   +P+      ++ A +  G
Sbjct: 435 WNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAG 481



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 13/175 (7%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E AK+VF  M   ++ SWNA+++G A  G     + LF  M+D   +    +   VL  
Sbjct: 417 IEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSA 476

Query: 61  FANSGYIKAGQVVHAMAIR---LGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPD 116
            +++G ++ G+   +  +    +   L  +  C ++D+  + GL D A  +   ++  PD
Sbjct: 477 CSHAGLVELGRQCFSSMVEDYDISPKLQHY-GC-MIDLLGRAGLFDEAEALMKNMEMKPD 534

Query: 117 VVAWGAIITCLDQQGCCQ----EAAKIFNLMRESSVKPNQFVLTSLVRATTETGD 167
              WG+++      G  +     A  +F L  E+   P  +VL S + AT    D
Sbjct: 535 GAIWGSLLGACRVHGNVELGEFAAKHLFELEPEN---PGAYVLLSNIYATAGRWD 586


>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 187/600 (31%), Positives = 315/600 (52%), Gaps = 3/600 (0%)

Query: 4   AKRVFKSMPELNVVS-WNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLKGF 61
           AK VF +M     +S WN L+ GY ++    + + LF  +      K   ++  +V K  
Sbjct: 57  AKCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKAC 116

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
                   G+++H   I+ G  +D  +  SLV MY KC   + A+ +F  + + DV  W 
Sbjct: 117 GGLHRYVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWN 176

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            +I+C  Q G  ++A + F LMR    +PN   +T+ + +     D   G  IH  +   
Sbjct: 177 TVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINS 236

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           GF  D+ + +ALV MY + G +     +FE +  +  V+WN++ S +         +++F
Sbjct: 237 GFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLF 296

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M  +G KP + T   ++  CS  + +  GK +H +TI++ +  +  V +SL+D+Y K 
Sbjct: 297 KRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKC 356

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G +E A   F  +    + ++  +I+ Y   G+   AL  F +MR   ++S+  T  S L
Sbjct: 357 GKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVL 416

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
             CS +A L  G+ +H++ ++     +  V  AL+ MYAKCG++D+A +VFK    RD  
Sbjct: 417 TACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLV 476

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SW  MI  Y  HG    ALE F  ML     PD + F+ +LSAC H GL++EG  +F+ +
Sbjct: 477 SWTSMITAYGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCYYFNQM 536

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITET-KLTPNALVWENLLGACSWHGNIE 540
             +YGI P ++H++C+ID+LGRAG+  E    + +  ++  +  +   L  AC  H NI+
Sbjct: 537 INVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNID 596

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           L  + A  L++ +P   S Y+  S++ A+  +W++   VR+ +   G+KK P CSWIE++
Sbjct: 597 LGAEIARTLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIEIN 656



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 149/518 (28%), Positives = 248/518 (47%), Gaps = 15/518 (2%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
           L  +L+   NS  +K G+++H   + LG   D FL  +L++ Y  C L D+A  VF  ++
Sbjct: 6   LLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVFDNME 65

Query: 114 DP-DVVAWGAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCG 171
           +P ++  W  ++    +     EA ++F  L+    +KP+ +   S+ +A         G
Sbjct: 66  NPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYVLG 125

Query: 172 ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY 231
           + IH  + K G   D +VG++LV MY +         +F  +  +D   WN + S +   
Sbjct: 126 KMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQS 185

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
            +    L  F  M   GF+PN  T    + +C+ L D+  G ++H   I      +  + 
Sbjct: 186 GNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFIS 245

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
           ++LVDMY K G LE A   F+ +  K + A+ ++I+ Y   G+    ++ F++M  EG+K
Sbjct: 246 SALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVK 305

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
               TL+S +  CS  A L  G+ +H   ++     D+FV+++L+ +Y KCG ++ AE +
Sbjct: 306 PTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKI 365

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           FK        SWN+MI GYV  G   +AL  F  M       D ITF  VL+ACS +  +
Sbjct: 366 FKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAAL 425

Query: 472 EEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV-WENL 529
           E+GK+ H   I+K       +     ++D+  + G   E   F     L    LV W ++
Sbjct: 426 EKGKEIHNLIIEKKLDNNEVV--MGALLDMYAKCGAVDEA--FSVFKCLPKRDLVSWTSM 481

Query: 530 LGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           + A   HG+       A   LEL  +M  + V P  ++
Sbjct: 482 ITAYGSHGH-------AYGALELFAEMLQSNVKPDRVA 512



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 107/372 (28%), Positives = 187/372 (50%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E A  +F  MPE +V  WN +++ Y +SG+ +  +  F  M+    + +  +++T +   
Sbjct: 158 EKAIWLFNEMPEKDVACWNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSC 217

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           A    +  G  +H   I  G  LD F+S +LVDMY KCG  + A+++F ++    VVAW 
Sbjct: 218 ARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWN 277

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           ++I+    +G      ++F  M    VKP    L+SL+   + +     G+ +H    + 
Sbjct: 278 SMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRN 337

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
             + D  V ++L+ +Y + G+V    ++F+ I     VSWN + S +       + L +F
Sbjct: 338 RIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLF 397

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M     + +  TF  +L ACS L+ +  GK++H   I+  LD N VV  +L+DMY K 
Sbjct: 398 SEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKC 457

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G +++A   F  L  +DL ++T++IT+Y   G A  AL+ F +M    +K +     + L
Sbjct: 458 GAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGHAYGALELFAEMLQSNVKPDRVAFLAIL 517

Query: 362 NGCSPVATLANG 373
           + C     +  G
Sbjct: 518 SACGHAGLVDEG 529



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 164/312 (52%), Gaps = 9/312 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E+A  +F+ MP+  VV+WN++++GY   GD    + LF  M +   K +  +LS+++  
Sbjct: 258 LEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMV 317

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            + S  +  G+ VH   IR     D F++ SL+D+Y KCG  + A K+F  I    VV+W
Sbjct: 318 CSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSW 377

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+    +G   EA  +F+ MR+S V+ +    TS++ A ++      G+ IH +I +
Sbjct: 378 NVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNLIIE 437

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              +++ +V  AL+ MY + G V     VF+ +  +D VSW ++ + +  +      L +
Sbjct: 438 KKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGHAYGALEL 497

Query: 241 FYQMLLKGFKPNMCTFIVILKAC--SSLSDVG---FGKQLHAHTIKHSLDGNHVVGTSLV 295
           F +ML    KP+   F+ IL AC  + L D G   F + ++ + I   ++      + L+
Sbjct: 498 FAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCYYFNQMINVYGIIPRVEHY----SCLI 553

Query: 296 DMYDKSGCLEDA 307
           D+  ++G L +A
Sbjct: 554 DLLGRAGRLHEA 565


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 199/613 (32%), Positives = 323/613 (52%), Gaps = 24/613 (3%)

Query: 6   RVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVL---KGFA 62
           +VF  + E N VSWN+L++        +  +  F  M D + + S F+L +V      F 
Sbjct: 150 KVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFP 209

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
               +  G+ VHA  +R G  L+ F+  +LV MY K G   ++  +    +  D+V W  
Sbjct: 210 MPEGLLMGKQVHAYGLRKG-ELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNT 268

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +++ L Q     EA +    M    V+P+ F ++S++ A +     R G+ +HA   K G
Sbjct: 269 VLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNG 328

Query: 183 -FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
             + ++ VG+ALV MY    +V  G RVF+ +  +    WNA+ + +   E  ++ L +F
Sbjct: 329 SLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLF 388

Query: 242 YQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
            +M    G   N  T   ++ AC         + +H   +K  LD +  V  +L+DMY +
Sbjct: 389 IEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSR 448

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL-----------EG 349
            G ++ A   F  + ++DL  +  IIT Y  +   E AL    KM++             
Sbjct: 449 LGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVS 508

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           +K N  TL + L  C+ ++ LA G+ +H+ A+K     D+ V +ALV MYAKCG +  + 
Sbjct: 509 LKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSR 568

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
            VF    +R+  +WN+++  Y  HG  + A++  RMM+ +G  P+E+TF+ V +ACSH G
Sbjct: 569 KVFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSG 628

Query: 470 LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPN----ALV 525
           ++ EG K F ++KK YG+ P+  H+AC++D+LGRAG+  E    I    L P     A  
Sbjct: 629 MVNEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLIN---LIPRNFDKAGA 685

Query: 526 WENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSS 585
           W +LLGAC  H N+E+ E  A+ L++LEP + S+YV  ++I ++ G W   + VR  + +
Sbjct: 686 WSSLLGACRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKA 745

Query: 586 QGIKKEPSCSWIE 598
           QG++KEP CSWIE
Sbjct: 746 QGVRKEPGCSWIE 758



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 155/567 (27%), Positives = 268/567 (47%), Gaps = 29/567 (5%)

Query: 19  WNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAI 78
           W  LL     S   ++ +  +  M  +  K   F+   +LK  A+   +  G+ +HA   
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 79  RLGCALDKF-LSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAA 137
           + G  +D   ++ +LV++Y KCG      KVF RI + + V+W ++I+ L      + A 
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 180

Query: 138 KIFNLMRESSVKPNQFVLTSLVRATTETGDQR---CGESIHAVICKYGFESDTLVGNALV 194
           + F  M +  V+P+ F L S+  A +          G+ +HA   + G E ++ + N LV
Sbjct: 181 EAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKG-ELNSFIINTLV 239

Query: 195 SMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMC 254
           +MY + G+++    +  +   +D V+WN + S     E   + L    +M+L+G +P+  
Sbjct: 240 AMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGF 299

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKH-SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
           T   +L ACS L  +  GK+LHA+ +K+ SLD N  VG++LVDMY     +      FD 
Sbjct: 300 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDG 359

Query: 314 LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE-GIKSNEFTLASCLNGCSPVATLAN 372
           + ++ +  + A+IT YAQ    E AL  F +M    G+ +N  T+A  +  C      + 
Sbjct: 360 MFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSK 419

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
              +H   VK G   D FV  AL+ MY++ G ID A+ +F     RD  +WN +I GYV 
Sbjct: 420 KEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVF 479

Query: 433 HGLGEKALEAF-RMMLDE----------GYVPDEITFVVVLSACSHMGLIEEGKK-HFSS 480
               E AL    +M + E             P+ IT + +L +C+ +  + +GK+ H  +
Sbjct: 480 SERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYA 539

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           IK    +   +   + ++D+  + G          +  +  N + W  ++ A   HGN  
Sbjct: 540 IKN--NLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIR-NVITWNVIVMAYGMHGN-- 594

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDIS 567
              +DA  +L +   M    V P++++
Sbjct: 595 --SQDAIDMLRM---MMVQGVKPNEVT 616



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 131/274 (47%), Gaps = 16/274 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSK--------- 51
           +++AKR+F  M + ++V+WN ++ GY  S   +  + +   M+ +E+K S+         
Sbjct: 452 IDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKP 511

Query: 52  --FSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF 109
              +L T+L   A    +  G+ +HA AI+   A D  +  +LVDMY+KCG    + KVF
Sbjct: 512 NSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVF 571

Query: 110 YRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
            +I   +V+ W  I+      G  Q+A  +  +M    VKPN+    S+  A + +G   
Sbjct: 572 DQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVN 631

Query: 170 CGESIHAVICK-YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ--DSVSWNALFS 226
            G  I   + K YG E  +     +V +    GRV    ++   I      + +W++L  
Sbjct: 632 EGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLG 691

Query: 227 RFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVIL 260
             + + + + G  I  Q L++  +PN+ +  V+L
Sbjct: 692 ACRIHNNLEIG-EIAAQNLIQ-LEPNVASHYVLL 723


>gi|6016735|gb|AAF01561.1|AC009325_31 hypothetical protein [Arabidopsis thaliana]
          Length = 641

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 186/595 (31%), Positives = 312/595 (52%), Gaps = 8/595 (1%)

Query: 11  MPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAG 70
           M + ++  WN LL   +     ++V++ F  M   E+K   F+L   LK       +  G
Sbjct: 1   MTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYG 60

Query: 71  QVVHAMA---IRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127
           +++H      + LG   D ++  SL+ MY KCG    AL++F  ++ PD+V W ++++  
Sbjct: 61  EMIHGFVKKDVTLGS--DLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGF 118

Query: 128 DQQGCCQEAAKIFNLM-RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
           ++ G   +A + F  M   S V P++  L +LV A T+  + R G  +H  + + GF +D
Sbjct: 119 EKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSND 178

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             + N+L++ Y ++        +F+ IA +D +SW+ + + +    +  + L +F  M+ 
Sbjct: 179 LSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMD 238

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
            G +PN+ T + +L+AC++  D+  G++ H   I+  L+    V T+LVDMY K    E+
Sbjct: 239 DGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEE 298

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG-IKSNEFTLASCLNGCS 365
           A   F  +  KD+ ++ A+I+ +   G A  +++ F  M LE   + +   +   L  CS
Sbjct: 299 AYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCS 358

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
            +  L   +  HS  +K G   + F+  +LV +Y++CGS+ +A  VF G AL+DT  W  
Sbjct: 359 ELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTS 418

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYV-PDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
           +I GY  HG G KALE F  M+    V P+E+TF+ +LSACSH GLI EG + F  +   
Sbjct: 419 LITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVND 478

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEK 544
           Y + P ++H+A ++D+LGR G              +P   +   LLGAC  H N E+ E 
Sbjct: 479 YRLAPNLEHYAVLVDLLGRVGDLDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAET 538

Query: 545 DAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            A+KL ELE      Y+  S++   +G W +   +R  +  +GIKK  + S IE+
Sbjct: 539 VAKKLFELESNHAGYYMLMSNVYGVKGEWENVEKLRNSVKQRGIKKGLAESLIEI 593



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 125/443 (28%), Positives = 207/443 (46%), Gaps = 9/443 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM---KDMEKKFSKFSLSTVLKG 60
           A R+F  + + ++V+W+++++G+ ++G   + +  F  M    D+     + +L T++  
Sbjct: 96  ALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTP--DRVTLITLVSA 153

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                  + G+ VH   IR G + D  L  SL++ Y+K      A+ +F  I + DV++W
Sbjct: 154 CTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISW 213

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I C  Q G   EA  +FN M +   +PN   +  +++A     D   G   H +  +
Sbjct: 214 STVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIR 273

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G E++  V  ALV MYM+         VF  I  +D VSW AL S F       + +  
Sbjct: 274 KGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEE 333

Query: 241 FYQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           F  MLL+   +P+    + +L +CS L  +   K  H++ IK+  D N  +G SLV++Y 
Sbjct: 334 FSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYS 393

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFTLA 358
           + G L +A   F+ +A KD   +T++IT Y   G+   AL+ F  M +   +K NE T  
Sbjct: 394 RCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFL 453

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA-LVAMYAKCGSIDDAEAVFKGSAL 417
           S L+ CS    +  G  +  + V    L       A LV +  + G +D A  + K    
Sbjct: 454 SILSACSHAGLIHEGLRIFKLMVNDYRLAPNLEHYAVLVDLLGRVGDLDTAIEITKRMPF 513

Query: 418 RDTAS-WNMMIGGYVKHGLGEKA 439
             T      ++G    H  GE A
Sbjct: 514 SPTPQILGTLLGACRIHQNGEMA 536



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 2/167 (1%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLKG 60
           E A  VF  +P  +VVSW AL++G+  +G   + +  F  M  +   +     +  VL  
Sbjct: 297 EEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGS 356

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +  G+++  +  H+  I+ G   + F+  SLV++YS+CG   NA KVF  I   D V W
Sbjct: 357 CSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVW 416

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESS-VKPNQFVLTSLVRATTETG 166
            ++IT     G   +A + FN M +SS VKPN+    S++ A +  G
Sbjct: 417 TSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAG 463


>gi|357443809|ref|XP_003592182.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481230|gb|AES62433.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 912

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 194/586 (33%), Positives = 308/586 (52%), Gaps = 2/586 (0%)

Query: 15  NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVH 74
           +VVSW  +L+   E+G   +   ++  M +     ++F+   +L   ++   +  G+++H
Sbjct: 182 DVVSWTTMLSSLVENGKWGEAFEIYVKMIESGVYPNEFTFVKLLGAVSSFLGLSYGKLLH 241

Query: 75  AMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQ 134
           A  I  G  L+  L  ++VDMYSKC    +A+KV     + DV  W  +I+   Q    +
Sbjct: 242 AHLIMFGAELNLVLKTAVVDMYSKCRRMVDAIKVSNLTPEYDVYLWTTLISGFTQNLQVR 301

Query: 135 EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALV 194
           EA  +F  M  S + PN F  +SL+ A++       GE  H+ +   G E D  +GNALV
Sbjct: 302 EAISVFRDMELSGLLPNNFTYSSLLNASSSILSLDLGEQFHSRVIIVGLEDDLYIGNALV 361

Query: 195 SMYMENGRVSYGS-RVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
            MYM+   ++  + +VF  I   + + W +L + F +    D   ++F +M   G +PN 
Sbjct: 362 DMYMKCSHITTNAVKVFREITSPNVMCWTSLIAGFAEKRLEDS-FQLFAEMQAAGVRPNS 420

Query: 254 CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
            T   IL ACS    +     LH H IK  +D +  V  +LVD Y   G +++A     +
Sbjct: 421 FTMSAILGACSKTRSLVPTMMLHGHIIKTKVDIDIAVANALVDTYAGVGMIDEAWSVIGT 480

Query: 314 LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG 373
           +  +D   YT +     Q G   MALK    M  +GIK +EF+LAS L+  + + T+  G
Sbjct: 481 MNLRDSITYTCLAARLNQKGHHGMALKVLIHMCNDGIKMDEFSLASFLSAAAGLGTMETG 540

Query: 374 RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKH 433
           + LH  +VK+G      VS +LV +Y+KCGSI DA   FK  +  D  SWN +I G+  +
Sbjct: 541 KQLHCYSVKSGFQRCHSVSNSLVHLYSKCGSIHDANRAFKDISEPDAFSWNGLISGFSWN 600

Query: 434 GLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKH 493
           GL   AL  F  M   G  PD IT + ++SACSH GL+E G ++F S++K Y ITP + H
Sbjct: 601 GLISHALSTFDDMRLAGVKPDSITLLSLISACSHGGLLELGLEYFHSMQKEYHITPKLDH 660

Query: 494 FACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELE 553
           + C++D+LGR G+  E    I +    P++L+ + LL AC+ HGN+ L E  A + LEL+
Sbjct: 661 YMCLVDLLGRGGRLEEAMGVIEKMSFKPDSLICKTLLNACNLHGNVALGEDMARRCLELD 720

Query: 554 PKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           P   + Y+  +++    G  +     R L+  +G+++ P   W+E+
Sbjct: 721 PSDPAIYLLLANLYDNAGLSDFGEKTRRLMRERGLRRSPGQCWMEI 766



 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 157/557 (28%), Positives = 275/557 (49%), Gaps = 10/557 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F  MP  +VVSW  +L+ + ++      + LF  M    +  ++F+LS+ L+    
Sbjct: 68  ARHLFDEMPNRDVVSWTTILSSHTKTKHHSDALQLFDMMIGSGEYPNEFTLSSALRSCFA 127

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLAD-NALKVFYRIKD-PDVVAWG 121
            G  + G  +H  A++LG  +++F+  SLV+ Y+KCG     A K+   +KD  DVV+W 
Sbjct: 128 LGEFERGMQIHCSAVKLGLEMNRFVGTSLVEFYTKCGCCSVEAWKLLSLVKDGGDVVSWT 187

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            +++ L + G   EA +I+  M ES V PN+F    L+ A +       G+ +HA +  +
Sbjct: 188 TMLSSLVENGKWGEAFEIYVKMIESGVYPNEFTFVKLLGAVSSFLGLSYGKLLHAHLIMF 247

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G E + ++  A+V MY +  R+    +V       D   W  L S F       + + +F
Sbjct: 248 GAELNLVLKTAVVDMYSKCRRMVDAIKVSNLTPEYDVYLWTTLISGFTQNLQVREAISVF 307

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK- 300
             M L G  PN  T+  +L A SS+  +  G+Q H+  I   L+ +  +G +LVDMY K 
Sbjct: 308 RDMELSGLLPNNFTYSSLLNASSSILSLDLGEQFHSRVIIVGLEDDLYIGNALVDMYMKC 367

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
           S    +A   F  + + ++  +T++I  +A+    E + + F +M+  G++ N FT+++ 
Sbjct: 368 SHITTNAVKVFREITSPNVMCWTSLIAGFAEK-RLEDSFQLFAEMQAAGVRPNSFTMSAI 426

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L  CS   +L    +LH   +KT   +D+ V+ ALV  YA  G ID+A +V     LRD+
Sbjct: 427 LGACSKTRSLVPTMMLHGHIIKTKVDIDIAVANALVDTYAGVGMIDEAWSVIGTMNLRDS 486

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFS 479
            ++  +     + G    AL+    M ++G   DE +    LSA + +G +E GK+ H  
Sbjct: 487 ITYTCLAARLNQKGHHGMALKVLIHMCNDGIKMDEFSLASFLSAAAGLGTMETGKQLHCY 546

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           S+K  +    ++ +   ++ +  + G   +      +    P+A  W  L+   SW+G I
Sbjct: 547 SVKSGFQRCHSVSN--SLVHLYSKCGSIHDANRAFKDIS-EPDAFSWNGLISGFSWNGLI 603

Query: 540 E--LDEKDAEKLLELEP 554
              L   D  +L  ++P
Sbjct: 604 SHALSTFDDMRLAGVKP 620



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 130/434 (29%), Positives = 210/434 (48%), Gaps = 6/434 (1%)

Query: 36  MHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDM 95
           M + C+      +F +  L  +   F NS  +K G  +H+  I+LG   D +L+ +L+ +
Sbjct: 1   MQMLCTKTFSLSRFQETCLRVL--SFCNSNSLKEGICIHSPIIKLGLQHDLYLTNNLLSL 58

Query: 96  YSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVL 155
           Y+K      A  +F  + + DVV+W  I++   +     +A ++F++M  S   PN+F L
Sbjct: 59  YAKTFGVHRARHLFDEMPNRDVVSWTTILSSHTKTKHHSDALQLFDMMIGSGEYPNEFTL 118

Query: 156 TSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH 215
           +S +R+    G+   G  IH    K G E +  VG +LV  Y + G  S  +    ++  
Sbjct: 119 SSALRSCFALGEFERGMQIHCSAVKLGLEMNRFVGTSLVEFYTKCGCCSVEAWKLLSLVK 178

Query: 216 Q--DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGK 273
              D VSW  + S   +     +   I+ +M+  G  PN  TF+ +L A SS   + +GK
Sbjct: 179 DGGDVVSWTTMLSSLVENGKWGEAFEIYVKMIESGVYPNEFTFVKLLGAVSSFLGLSYGK 238

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
            LHAH I    + N V+ T++VDMY K   + DA    +     D++ +T +I+ + Q  
Sbjct: 239 LLHAHLIMFGAELNLVLKTAVVDMYSKCRRMVDAIKVSNLTPEYDVYLWTTLISGFTQNL 298

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST 393
           +   A+  FR M L G+  N FT +S LN  S + +L  G   HS  +  G   D+++  
Sbjct: 299 QVREAISVFRDMELSGLLPNNFTYSSLLNASSSILSLDLGEQFHSRVIIVGLEDDLYIGN 358

Query: 394 ALVAMYAKCGSI-DDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV 452
           ALV MY KC  I  +A  VF+     +   W  +I G+ +  L E + + F  M   G  
Sbjct: 359 ALVDMYMKCSHITTNAVKVFREITSPNVMCWTSLIAGFAEKRL-EDSFQLFAEMQAAGVR 417

Query: 453 PDEITFVVVLSACS 466
           P+  T   +L ACS
Sbjct: 418 PNSFTMSAILGACS 431



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 109/401 (27%), Positives = 189/401 (47%), Gaps = 11/401 (2%)

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
           G  IH+ I K G + D  + N L+S+Y +   V     +F+ + ++D VSW  + S    
Sbjct: 33  GICIHSPIIKLGLQHDLYLTNNLLSLYAKTFGVHRARHLFDEMPNRDVVSWTTILSSHTK 92

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
            +     L++F  M+  G  PN  T    L++C +L +   G Q+H   +K  L+ N  V
Sbjct: 93  TKHHSDALQLFDMMIGSGEYPNEFTLSSALRSCFALGEFERGMQIHCSAVKLGLEMNRFV 152

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANK--DLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
           GTSLV+ Y K GC         SL     D+ ++T +++S  + G+   A + + KM   
Sbjct: 153 GTSLVEFYTKCGCCSVEAWKLLSLVKDGGDVVSWTTMLSSLVENGKWGEAFEIYVKMIES 212

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
           G+  NEFT    L   S    L+ G+LLH+  +  G  L++ + TA+V MY+KC  + DA
Sbjct: 213 GVYPNEFTFVKLLGAVSSFLGLSYGKLLHAHLIMFGAELNLVLKTAVVDMYSKCRRMVDA 272

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
             V   +   D   W  +I G+ ++    +A+  FR M   G +P+  T+  +L+A S +
Sbjct: 273 IKVSNLTPEYDVYLWTTLISGFTQNLQVREAISVFRDMELSGLLPNNFTYSSLLNASSSI 332

Query: 469 GLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWEN 528
             ++ G++ F S   I G+   +     ++D+  +    T     +     +PN + W +
Sbjct: 333 LSLDLGEQ-FHSRVIIVGLEDDLYIGNALVDMYMKCSHITTNAVKVFREITSPNVMCWTS 391

Query: 529 LLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISAT 569
           L+            EK  E   +L  +M++  V P+  + +
Sbjct: 392 LIAG--------FAEKRLEDSFQLFAEMQAAGVRPNSFTMS 424



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 1/115 (0%)

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
           +L  G  +HS  +K G   D++++  L+++YAK   +  A  +F     RD  SW  ++ 
Sbjct: 29  SLKEGICIHSPIIKLGLQHDLYLTNNLLSLYAKTFGVHRARHLFDEMPNRDVVSWTTILS 88

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK 482
            + K      AL+ F MM+  G  P+E T    L +C  +G  E G + H S++K
Sbjct: 89  SHTKTKHHSDALQLFDMMIGSGEYPNEFTLSSALRSCFALGEFERGMQIHCSAVK 143



 Score = 39.3 bits (90), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 62/132 (46%), Gaps = 6/132 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A R FK + E +  SWN L++G++ +G     +  F  M+    K    +L +++   ++
Sbjct: 575 ANRAFKDISEPDAFSWNGLISGFSWNGLISHALSTFDDMRLAGVKPDSITLLSLISACSH 634

Query: 64  SGYIKAG-QVVHAMA--IRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVVA 119
            G ++ G +  H+M     +   LD ++   LVD+  + G  + A+ V  ++   PD + 
Sbjct: 635 GGLLELGLEYFHSMQKEYHITPKLDHYM--CLVDLLGRGGRLEEAMGVIEKMSFKPDSLI 692

Query: 120 WGAIITCLDQQG 131
              ++   +  G
Sbjct: 693 CKTLLNACNLHG 704


>gi|326495056|dbj|BAJ85624.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 673

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 183/599 (30%), Positives = 306/599 (51%), Gaps = 3/599 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDM--EKKFSKFSLSTVLKGF 61
           A+RV    P  +  ++   L  +A +G     + L   M+    E       LS  LK  
Sbjct: 74  ARRVLDETPRPDPYTYRVALGWHAAAGRHADALALHRGMRRRCPEAHDDVVLLSLALKAS 133

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
             S   + G+ +H  A++ G A D F+   LVDMY+K G  +NA KVF RI   +VV+W 
Sbjct: 134 VRSADFRYGRRLHCNAVKAGGA-DGFVMNCLVDMYAKAGDLENARKVFDRILGRNVVSWT 192

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           ++++   Q G  +E   +FN MRE  V P+++ + S++ A T  G    G  +H  + K+
Sbjct: 193 SMLSGCLQNGFAEEGLALFNEMREERVLPSEYTMASVLMACTMLGSLHQGRWVHGSVIKH 252

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G   +  +  A++ MY++ G V    R+F+ +   D V W  +   +    SP   L +F
Sbjct: 253 GMVFNPFITAAVLDMYVKCGEVEDARRLFDELGFVDLVLWTTMIVGYTQNGSPLDALLLF 312

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
                    PN  T   +L A + L ++  G+ +HA ++K  +  N VV  +LVDMY K 
Sbjct: 313 SDKKFVHIVPNSVTIATVLSASAQLRNLSLGRLIHAMSVKLLVIENDVVMNALVDMYAKC 372

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
             L +A   F  ++NKD+  + ++I  Y +      AL  F +MR++G   +  ++ + L
Sbjct: 373 KALSEANGIFGRISNKDVVTWNSLIAGYVENDMGNEALMLFSQMRVQGSSPDAISIVNAL 432

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           + C  +  L  G+  H+ AVK   L +++V+TAL+ +Y KC  +  A+ VF   + R++ 
Sbjct: 433 SACVCLGDLLIGKCFHTYAVKRAFLSNVYVNTALLNLYNKCADLPSAQRVFSEMSERNSV 492

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           +W  MIGGY   G    +++    ML +   P+E+ F  +LS CSH G++  GK  F S+
Sbjct: 493 TWGAMIGGYGMQGDSAGSIDLLNKMLKDNIQPNEVVFTSILSTCSHTGMVSVGKMCFDSM 552

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
            + + ITP++KH+ACM+D+L RAG   E   FI +  +  +  +W   L  C  H  +E 
Sbjct: 553 AQYFNITPSMKHYACMVDVLARAGNLEEALEFIQKMPMPADISIWGAFLHGCKLHSRLEF 612

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
            E+   +++ L P     YV  S++  + GRW+    +R L+  +G+ K P CS + ++
Sbjct: 613 GEEAINRMMVLHPDKPDFYVLMSNLYTSYGRWDKSLAIRRLMQERGLVKLPGCSSVGLE 671



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 126/468 (26%), Positives = 241/468 (51%), Gaps = 10/468 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A++VF  +   NVVSW ++L+G  ++G  ++ + LF  M++     S++++++VL  
Sbjct: 173 LENARKVFDRILGRNVVSWTSMLSGCLQNGFAEEGLALFNEMREERVLPSEYTMASVLMA 232

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
               G +  G+ VH   I+ G   + F++ +++DMY KCG  ++A ++F  +   D+V W
Sbjct: 233 CTMLGSLHQGRWVHGSVIKHGMVFNPFITAAVLDMYVKCGEVEDARRLFDELGFVDLVLW 292

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I    Q G   +A  +F+  +   + PN   + +++ A+ +  +   G  IHA+  K
Sbjct: 293 TTMIVGYTQNGSPLDALLLFSDKKFVHIVPNSVTIATVLSASAQLRNLSLGRLIHAMSVK 352

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
                + +V NALV MY +   +S  + +F  I+++D V+WN+L + + + +  ++ L +
Sbjct: 353 LLVIENDVVMNALVDMYAKCKALSEANGIFGRISNKDVVTWNSLIAGYVENDMGNEALML 412

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QM ++G  P+  + +  L AC  L D+  GK  H + +K +   N  V T+L+++Y+K
Sbjct: 413 FSQMRVQGSSPDAISIVNALSACVCLGDLLIGKCFHTYAVKRAFLSNVYVNTALLNLYNK 472

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
              L  A   F  ++ ++   + A+I  Y   G++  ++    KM  + I+ NE    S 
Sbjct: 473 CADLPSAQRVFSEMSERNSVTWGAMIGGYGMQGDSAGSIDLLNKMLKDNIQPNEVVFTSI 532

Query: 361 LNGCSPVATLANGRL-LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA-EAVFKGSALR 418
           L+ CS    ++ G++   S+A        M     +V + A+ G++++A E + K     
Sbjct: 533 LSTCSHTGMVSVGKMCFDSMAQYFNITPSMKHYACMVDVLARAGNLEEALEFIQKMPMPA 592

Query: 419 DTASWNMMIGGYVKHG---LGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           D + W   + G   H     GE+A+   RMM+     PD+  F V++S
Sbjct: 593 DISIWGAFLHGCKLHSRLEFGEEAIN--RMMVLH---PDKPDFYVLMS 635



 Score = 45.4 bits (106), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 90/216 (41%), Gaps = 15/216 (6%)

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
           ATL + R LH+  +  G L  +   T L++ YA  G +  A  V   +   D  ++ + +
Sbjct: 34  ATLPSLRALHARLLAHGLLRALRARTKLLSCYAALGDLASARRVLDETPRPDPYTYRVAL 93

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS----ACSHMGLIEEGKKHFSSIKK 483
           G +   G    AL   R M      P+    VV+LS    A         G++   +  K
Sbjct: 94  GWHAAAGRHADALALHRGM--RRRCPEAHDDVVLLSLALKASVRSADFRYGRRLHCNAVK 151

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE--- 540
             G    + +  C++D+  +AG   E    + +  L  N + W ++L  C  +G  E   
Sbjct: 152 AGGADGFVMN--CLVDMYAKAGDL-ENARKVFDRILGRNVVSWTSMLSGCLQNGFAEEGL 208

Query: 541 --LDEKDAEKLLELEPKMESNYVFPSDI-SATQGRW 573
              +E   E++L  E  M S  +  + + S  QGRW
Sbjct: 209 ALFNEMREERVLPSEYTMASVLMACTMLGSLHQGRW 244


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 190/624 (30%), Positives = 326/624 (52%), Gaps = 51/624 (8%)

Query: 20  NALLNGYAE-----SGDGQKV-------MHLFCSMKDMEKKFSKFSLSTVLKGFANSGYI 67
           +AL N YA      +GDG +        +H    +K   +    F L+ +L  +A SG +
Sbjct: 6   HALCNRYAAILSSAAGDGGRTGVRVAGAVHCLI-LKTFLQAPPTFLLNHLLTAYAKSGRL 64

Query: 68  -KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
            +A +V   M        + F   +L+   +   L  +  ++F  + + D V++ A+IT 
Sbjct: 65  ARARRVFDEMP-----DPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITG 119

Query: 127 LDQQGCCQEAAKIFN-LMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
               G    + +++  L+RE SV+P +  L++++   +   D+  G S+H  + + GF +
Sbjct: 120 FSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGA 179

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAI-------------------------------A 214
              VG+ LV MY + G +    RVF+ +                                
Sbjct: 180 YAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMV 239

Query: 215 HQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ 274
            +DS++W  + +         + L +F +M  +G   +  TF  IL AC +L+ +  GKQ
Sbjct: 240 DRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQ 299

Query: 275 LHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGE 334
           +HA+  +   + N  VG++LVDMY K   +  A   F  +  +++ ++TA+I  Y Q   
Sbjct: 300 IHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNAC 359

Query: 335 AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA 394
           +E A++ F +M+++GIK ++FTL S ++ C+ +A+L  G   H +A+ +G +  + VS A
Sbjct: 360 SEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNA 419

Query: 395 LVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD 454
           LV +Y KCGSI+DA  +F   +  D  SW  ++ GY + G  ++ ++ F  ML  G  PD
Sbjct: 420 LVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPD 479

Query: 455 EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFI 514
            +TF+ VLSACS  GL+E+G  +F S++K +GI P   H+ CMID+  R+G+F E E FI
Sbjct: 480 GVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFI 539

Query: 515 TETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWN 574
            +   +P+A  W  LL +C   GN+E+ +  AE LLE +P+  ++YV    + A +G+W 
Sbjct: 540 KQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWT 599

Query: 575 DFSGVRALLSSQGIKKEPSCSWIE 598
           + + +R  +  + +KKEP CSWI+
Sbjct: 600 EVAHLRRGMRDRQVKKEPGCSWIK 623



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 120/448 (26%), Positives = 207/448 (46%), Gaps = 45/448 (10%)

Query: 5   KRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCS-MKDMEKKFSKFSLSTVLKGFAN 63
           +R+F SMPE + VS+NAL+ G++ +G   + + L+ + +++   + ++ +LS ++   + 
Sbjct: 99  ERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASA 158

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK---------- 113
                 G  VH   +RLG     F+   LVDMY+K GL  +A +VF  ++          
Sbjct: 159 LSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTL 218

Query: 114 ---------------------DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQ 152
                                D D + W  ++T L Q G   EA  +F  MR   V  +Q
Sbjct: 219 ITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQ 278

Query: 153 FVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEA 212
           +   S++ A         G+ IHA I +  +E +  VG+ALV MY +   +     VF  
Sbjct: 279 YTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRR 338

Query: 213 IAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFG 272
           +  ++ +SW A+   +      ++ +R F +M + G KP+  T   ++ +C++L+ +  G
Sbjct: 339 MTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEG 398

Query: 273 KQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQA 332
            Q H   +   L     V  +LV +Y K G +EDA   FD ++  D  ++TA++T YAQ 
Sbjct: 399 AQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQF 458

Query: 333 GEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG-------RLLHSIAVKTGH 385
           G+A+  +  F KM   G+K +  T    L+ CS    +  G       +  H I     H
Sbjct: 459 GKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDH 518

Query: 386 LLDMFVSTALVAMYAKCGSIDDAEAVFK 413
                  T ++ +Y++ G   +AE   K
Sbjct: 519 Y------TCMIDLYSRSGRFKEAEEFIK 540



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 167/343 (48%), Gaps = 10/343 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E AK +F+ M + + ++W  ++ G  ++G   + + +F  M+       +++  ++L  
Sbjct: 228 IEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTA 287

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 ++ G+ +HA   R     + F+  +LVDMYSKC     A  VF R+   ++++W
Sbjct: 288 CGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISW 347

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    Q  C +EA + F+ M+   +KP+ F L S++ +         G   H +   
Sbjct: 348 TAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALV 407

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G      V NALV++Y + G +    R+F+ ++  D VSW AL + +  +    + + +
Sbjct: 408 SGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDL 467

Query: 241 FYQMLLKGFKPNMCTFIVILKACSS--LSDVG---FGKQLHAHTIKHSLDGNHVVGTSLV 295
           F +ML  G KP+  TFI +L ACS   L + G   F      H I   +D ++   T ++
Sbjct: 468 FEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIV-PIDDHY---TCMI 523

Query: 296 DMYDKSGCLEDAGVAFDSLAN-KDLFAYTAIITSYAQAGEAEM 337
           D+Y +SG  ++A      + +  D F +  +++S    G  E+
Sbjct: 524 DLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEI 566


>gi|225464746|ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic [Vitis vinifera]
          Length = 825

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 200/612 (32%), Positives = 319/612 (52%), Gaps = 17/612 (2%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           +L +RVF +M + NVV+WN +++ Y ++    +   +F +M  M  + +  S   V    
Sbjct: 169 DLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAV 228

Query: 62  ANSGYIKAGQVVHAMAIRLGCAL--DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
                     V++ + ++LG     D F+  S + MY++ G  D A ++F    + +   
Sbjct: 229 WRMSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEV 288

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVL-----TSLVRATTETGDQRCGESI 174
           W  +I    Q  C  EA  +F  + ES     QFVL      S + A ++      G  +
Sbjct: 289 WNTMIGGYVQNNCPIEAIDLFVQVMESE----QFVLDDVTFLSALTAISQLQWLELGRQL 344

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           HA I K       ++ NA++ MY   G +    +VF  +  +D V+WN + S F      
Sbjct: 345 HAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLD 404

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
           D+GL + + M  +GF  +  T   +L   S+L     GKQ HA+ I+H +    +  + L
Sbjct: 405 DEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGM-DSYL 463

Query: 295 VDMYDKSGCLEDAGVAFD--SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           +DMY KSG +  A   F+  S  ++D   + A+I  Y Q G +E     FRKM  + ++ 
Sbjct: 464 IDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRP 523

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
           N  TLAS L  C+P+ T+  G+ +H  A++     ++FV TAL+ MY+K G+I  AE VF
Sbjct: 524 NAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNRNVFVGTALLDMYSKSGAITYAENVF 583

Query: 413 KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE 472
             +  +++ ++  MI  Y +HG+GE+AL  F  ML  G  PD +TFV +LSACS+ GL++
Sbjct: 584 AETLEKNSVTYTTMISSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVD 643

Query: 473 EGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNAL-VWENLLG 531
           EG + F S+++ Y I P+ +H+ C+ D+LGR G+  E   F+       N   +W +LLG
Sbjct: 644 EGLRIFQSMEREYKIQPSAEHYCCVADMLGRVGRVVEAYEFVKGLGEEGNTFGIWGSLLG 703

Query: 532 ACSWHGNIELDEKDAEKLLELE--PKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589
           AC  HG  EL +  A KLLE+E    +   +V  S+I A +G W++   VR  +  +G+ 
Sbjct: 704 ACRIHGEFELGKVVANKLLEMEKGSSLTGYHVLLSNIYAAEGNWDNVDRVRKEMRQKGLM 763

Query: 590 KEPSCSWIEVDG 601
           KE  CSW+EV G
Sbjct: 764 KEAGCSWVEVAG 775



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 138/554 (24%), Positives = 263/554 (47%), Gaps = 24/554 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMK-DMEKKFSKFSLSTVLKGFA 62
           A  +F S+P    V WN ++ G+  +      +  +  M+     KF  ++ S+ LK  A
Sbjct: 56  ALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKACA 115

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKC-------GLA------DNALKVF 109
            +  +K G+ +H   +R      + +  SL++MYS C       G A      D   +VF
Sbjct: 116 QARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVF 175

Query: 110 YRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
             ++  +VVAW  +I+   +     EA K+F  M    ++P      ++  A     D  
Sbjct: 176 DTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMSDYD 235

Query: 170 CGESIHAVICKYG--FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR 227
               ++ ++ K G  F  D  V ++ + MY E G V +   +F+    +++  WN +   
Sbjct: 236 NANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGG 295

Query: 228 FQDYESPDQGLRIFYQML-LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDG 286
           +     P + + +F Q++  + F  +  TF+  L A S L  +  G+QLHA+ +K S   
Sbjct: 296 YVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYILKSSTIL 355

Query: 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR 346
             V+  +++ MY + G +  +   F ++  +D+  +  +++++ Q G  +  L     M+
Sbjct: 356 QVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQ 415

Query: 347 LEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSID 406
            +G   +  TL + L+  S + +   G+  H+  ++ G   +  + + L+ MYAK G I 
Sbjct: 416 KQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEG-MDSYLIDMYAKSGLIT 474

Query: 407 DAEAVFKGSA--LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
            A+ +F+ ++   RD A+WN MI GY ++GL E+    FR M+++   P+ +T   +L A
Sbjct: 475 TAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPA 534

Query: 465 CSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNA 523
           C+ MG I  GK+ H  +I+    +   +     ++D+  ++G  T  EN   ET L  N+
Sbjct: 535 CNPMGTIGLGKQIHGFAIRCF--LNRNVFVGTALLDMYSKSGAITYAENVFAET-LEKNS 591

Query: 524 LVWENLLGACSWHG 537
           + +  ++ +   HG
Sbjct: 592 VTYTTMISSYGQHG 605



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 190/383 (49%), Gaps = 5/383 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLK 59
           ++ A+ +F    E N   WN ++ GY ++    + + LF  + + E+      +  + L 
Sbjct: 271 VDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALT 330

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             +   +++ G+ +HA  ++    L   +  +++ MYS+CG    + KVF  + + DVV 
Sbjct: 331 AISQLQWLELGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVT 390

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  +++   Q G   E   +   M++     +   LT+L+   +    Q  G+  HA + 
Sbjct: 391 WNTMVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLI 450

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA--HQDSVSWNALFSRFQDYESPDQG 237
           ++G + + +  + L+ MY ++G ++   ++FE  +   +D  +WNA+ + +      ++G
Sbjct: 451 RHGIQFEGM-DSYLIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEG 509

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
             +F +M+ +  +PN  T   IL AC+ +  +G GKQ+H   I+  L+ N  VGT+L+DM
Sbjct: 510 FAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNRNVFVGTALLDM 569

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y KSG +  A   F     K+   YT +I+SY Q G  E AL  F  M   GIK +  T 
Sbjct: 570 YSKSGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGERALSLFHAMLGSGIKPDSVTF 629

Query: 358 ASCLNGCSPVATLANG-RLLHSI 379
            + L+ CS    +  G R+  S+
Sbjct: 630 VAILSACSYAGLVDEGLRIFQSM 652


>gi|413946615|gb|AFW79264.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 682

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 185/535 (34%), Positives = 289/535 (54%), Gaps = 4/535 (0%)

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
           G +  G+ +HA  I      D  L  +L+  Y+KCG    A  VF  +   + V+   ++
Sbjct: 25  GDLSKGKALHARLIT-AAHFDVVLHNNLISFYAKCGRVGLARTVFDAMPFRNAVSANLLM 83

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
           +     G  +E+     L+R      N++VL++ V AT        G   H    K GF 
Sbjct: 84  SGYASSGRHKES---LQLLRVVDFGMNEYVLSAAVSATANVRSYDMGRQCHGYAVKAGFA 140

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
               V NA++ MY +   +   S+VFE+++  D+ ++N++ + + D    D  L I   M
Sbjct: 141 EQRYVFNAVLYMYCQCAHMEDASKVFESVSGFDAFAFNSMINGYLDRGQLDGSLGIVRNM 200

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
             +  K +  +++ +L  C+S+ D   G Q+HA  +K  L+ N  VG++LVDMY K   +
Sbjct: 201 TGEAEKWDYVSYVAVLGHCASMKDSVLGAQVHAQALKKRLELNVYVGSALVDMYGKCDHV 260

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
            DA  AF+ L  K++ ++TA++T+Y Q    E AL+ F  M +EG++ NEFT A  LN C
Sbjct: 261 HDANRAFEVLPEKNVVSWTAVMTAYTQNELYEDALQLFLDMEMEGVQPNEFTYAVALNSC 320

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
           + +A L  G  L +  +KTGH   + VS AL+ MY+K GSI+DA  VF    LRD  SWN
Sbjct: 321 AGLAALRTGNALGACVMKTGHWDHLLVSNALMNMYSKSGSIEDAHRVFISMPLRDVVSWN 380

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
           ++I GY  HGL  + +EAF  ML    +P  +TFV VLSAC+ +GL++E   + +++ K 
Sbjct: 381 LIITGYAHHGLAREGMEAFHSMLSAAVIPSYVTFVGVLSACAQLGLVDEAFYYLNTMMKE 440

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEK 544
            GITP  +H+ CM+ +L R G+  E E FI    +  + + W +LL +C  + N  L  +
Sbjct: 441 VGITPGKEHYTCMVGLLCRVGRLDEAERFIVNNCIGTDVVAWRSLLNSCQVYKNYGLGHR 500

Query: 545 DAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            AE++L+LEP     YV  S++ A   RW+    VR  +  + ++K P  SWI V
Sbjct: 501 VAEQILQLEPSDVGTYVLLSNMYAKANRWDGVVKVRKHMRERAVRKSPGVSWIHV 555



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 122/466 (26%), Positives = 223/466 (47%), Gaps = 13/466 (2%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           LA+ VF +MP  N VS N L++GYA SG  ++ + L   ++ ++   +++ LS  +   A
Sbjct: 63  LARTVFDAMPFRNAVSANLLMSGYASSGRHKESLQL---LRVVDFGMNEYVLSAAVSATA 119

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           N      G+  H  A++ G A  +++  +++ MY +C   ++A KVF  +   D  A+ +
Sbjct: 120 NVRSYDMGRQCHGYAVKAGFAEQRYVFNAVLYMYCQCAHMEDASKVFESVSGFDAFAFNS 179

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I     +G    +  I   M   + K +     +++       D   G  +HA   K  
Sbjct: 180 MINGYLDRGQLDGSLGIVRNMTGEAEKWDYVSYVAVLGHCASMKDSVLGAQVHAQALKKR 239

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            E +  VG+ALV MY +   V   +R FE +  ++ VSW A+ + +   E  +  L++F 
Sbjct: 240 LELNVYVGSALVDMYGKCDHVHDANRAFEVLPEKNVVSWTAVMTAYTQNELYEDALQLFL 299

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            M ++G +PN  T+ V L +C+ L+ +  G  L A  +K     + +V  +L++MY KSG
Sbjct: 300 DMEMEGVQPNEFTYAVALNSCAGLAALRTGNALGACVMKTGHWDHLLVSNALMNMYSKSG 359

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            +EDA   F S+  +D+ ++  IIT YA  G A   ++ F  M    +  +  T    L+
Sbjct: 360 SIEDAHRVFISMPLRDVVSWNLIITGYAHHGLAREGMEAFHSMLSAAVIPSYVTFVGVLS 419

Query: 363 GCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL-RDT 420
            C+ +  +      L+++  + G        T +V +  + G +D+AE     + +  D 
Sbjct: 420 ACAQLGLVDEAFYYLNTMMKEVGITPGKEHYTCMVGLLCRVGRLDEAERFIVNNCIGTDV 479

Query: 421 ASWNMMIGG---YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
            +W  ++     Y  +GLG +  E   + L+    P ++   V+LS
Sbjct: 480 VAWRSLLNSCQVYKNYGLGHRVAEQI-LQLE----PSDVGTYVLLS 520



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 137/266 (51%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A +VF+S+   +  ++N+++NGY + G     + +  +M    +K+   S   VL  
Sbjct: 159 MEDASKVFESVSGFDAFAFNSMINGYLDRGQLDGSLGIVRNMTGEAEKWDYVSYVAVLGH 218

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+      G  VHA A++    L+ ++  +LVDMY KC    +A + F  + + +VV+W
Sbjct: 219 CASMKDSVLGAQVHAQALKKRLELNVYVGSALVDMYGKCDHVHDANRAFEVLPEKNVVSW 278

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A++T   Q    ++A ++F  M    V+PN+F     + +       R G ++ A + K
Sbjct: 279 TAVMTAYTQNELYEDALQLFLDMEMEGVQPNEFTYAVALNSCAGLAALRTGNALGACVMK 338

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G     LV NAL++MY ++G +    RVF ++  +D VSWN + + +  +    +G+  
Sbjct: 339 TGHWDHLLVSNALMNMYSKSGSIEDAHRVFISMPLRDVVSWNLIITGYAHHGLAREGMEA 398

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSL 266
           F+ ML     P+  TF+ +L AC+ L
Sbjct: 399 FHSMLSAAVIPSYVTFVGVLSACAQL 424



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 59/127 (46%), Gaps = 2/127 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A RVF SMP  +VVSWN ++ GYA  G  ++ M  F SM       S  +   VL  
Sbjct: 361 IEDAHRVFISMPLRDVVSWNLIITGYAHHGLAREGMEAFHSMLSAAVIPSYVTFVGVLSA 420

Query: 61  FANSGYI-KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALK-VFYRIKDPDVV 118
            A  G + +A   ++ M   +G    K     +V +  + G  D A + +       DVV
Sbjct: 421 CAQLGLVDEAFYYLNTMMKEVGITPGKEHYTCMVGLLCRVGRLDEAERFIVNNCIGTDVV 480

Query: 119 AWGAIIT 125
           AW +++ 
Sbjct: 481 AWRSLLN 487


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 193/599 (32%), Positives = 308/599 (51%), Gaps = 4/599 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+  F  +   +V +WN++++ YA  G     +   C  + +   F +    T       
Sbjct: 94  ARLTFDQIQTKDVYTWNSMISAYARIGHFHAAVD--CFNEFLSTSFLQSDHYTFPPVIRA 151

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G +  G+ VH + ++LG   D +++ S +  YS+ G    A  +F  +   D+  W A+
Sbjct: 152 CGNLDDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAM 211

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+     G   EA ++F+ MR  SV  +   ++SL+    +  D   G  IH    K G 
Sbjct: 212 ISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGL 271

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E D  V NAL++MY + G +     +F  +  +D VSWN+L + F+  + P   L ++ +
Sbjct: 272 EFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNK 331

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGTSLVDMYDKSG 302
           M   G  P++ T + +    + L +    + +H    +     + + +G +++DMY K G
Sbjct: 332 MHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLG 391

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL-EGIKSNEFTLASCL 361
            ++ A   F+ L  KD+ ++ ++IT Y+Q G A  A+  +  MR   G   N+ T  S L
Sbjct: 392 FIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSIL 451

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
              S +  L  G   H   +K     D+FVST LV MY KCG + DA ++F     + + 
Sbjct: 452 TAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSV 511

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SWN +I  +  HG G KA++ F+ M  EG  PD ITFV +LSACSH GL++EG+  F  +
Sbjct: 512 SWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLM 571

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
           ++ YGI P++KH+ CM+D+ GRAG   +  NF+    + P+  VW  LLGAC  H N+EL
Sbjct: 572 QETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVEL 631

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
               ++ LL++E +    YV  S+I A  G W     VR+L   +G+KK P  S IEVD
Sbjct: 632 VRTVSDHLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVD 690



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 132/505 (26%), Positives = 241/505 (47%), Gaps = 17/505 (3%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +   + +HA+ +  G     FLS  L++ Y+  G   +A   F +I+  DV  W ++I+ 
Sbjct: 56  VHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISA 115

Query: 127 LDQQGCCQEAAKIFN-LMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
             + G    A   FN  +  S ++ + +    ++RA     D   G  +H ++ K GFE 
Sbjct: 116 YARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDD---GRKVHCLVLKLGFEC 172

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           D  +  + +  Y   G VS    +F+ +  +D  +WNA+ S F       + L +F +M 
Sbjct: 173 DVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMR 232

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
            K    +  T   +L  C  L D+  G  +H + IK  L+ +  V  +L++MY K G L 
Sbjct: 233 FKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELR 292

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
            A   F+ +  +D+ ++ +++ ++ Q  +  +AL  + KM   G+  +  TL S  +  +
Sbjct: 293 SAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAA 352

Query: 366 PVATLANGRLLHSIAVKTGHLL-DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
            +    + R +H    +    L D+ +  A++ MYAK G ID A  VF+G  ++D  SWN
Sbjct: 353 ELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWN 412

Query: 425 MMIGGYVKHGLGEKALEAF-RMMLDEGYVPDEITFVVVLSACSHMGLIEEG-KKHFSSIK 482
            +I GY ++GL  +A++ +  M    G VP++ T+V +L+A S +G +++G K H   IK
Sbjct: 413 SLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIK 472

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
                   +    C++D+ G+ GK  +  +   E     +++ W  ++     HG     
Sbjct: 473 NFLYFDIFVS--TCLVDMYGKCGKLADALSLFYEVP-HQSSVSWNAIISCHGLHGY---- 525

Query: 543 EKDAEKLLELEPKMESNYVFPSDIS 567
                K ++L  +M+S  V P  I+
Sbjct: 526 ---GLKAVKLFKEMQSEGVKPDHIT 547



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 118/433 (27%), Positives = 214/433 (49%), Gaps = 4/433 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + LA  +F +M   ++ +WNA+++G+  +G   + + +F  M+         ++S++L  
Sbjct: 190 VSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPI 249

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 I +G ++H  AI+LG   D F+  +L++MY+K G   +A  +F ++K  D+V+W
Sbjct: 250 CVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSW 309

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +++   +Q      A  ++N M    V P+   L SL     E G+     SIH  + +
Sbjct: 310 NSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTR 369

Query: 181 Y-GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
              F  D  +GNA++ MY + G +    +VFE +  +D +SWN+L + +      ++ + 
Sbjct: 370 RCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAID 429

Query: 240 IFYQM-LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           ++  M    G  PN  T++ IL A S L  +  G + H   IK+ L  +  V T LVDMY
Sbjct: 430 VYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMY 489

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G L DA   F  + ++   ++ AII+ +   G    A+K F++M+ EG+K +  T  
Sbjct: 490 GKCGKLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFV 549

Query: 359 SCLNGCSPVATLANGRLLHSIAVKT-GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           S L+ CS    +  G+    +  +T G    +     +V ++ + G ++ A    K   +
Sbjct: 550 SLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPV 609

Query: 418 R-DTASWNMMIGG 429
           R D + W  ++G 
Sbjct: 610 RPDVSVWGALLGA 622


>gi|186512044|ref|NP_001119013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635616|sp|P0C8Q2.1|PP323_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19191, mitochondrial; Flags: Precursor
 gi|332658758|gb|AEE84158.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 188/602 (31%), Positives = 318/602 (52%), Gaps = 3/602 (0%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           + +R+++     +V +WN  +       D  + + LF  MK    + + F+   V K  A
Sbjct: 4   IHRRLYRISGLSSVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACA 63

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
               +   ++VHA  I+     D F+  + VDM+ KC   D A KVF R+ + D   W A
Sbjct: 64  RLADVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNA 123

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +++   Q G   +A  +F  MR + + P+   + +L+++ +     +  E++HAV  + G
Sbjct: 124 MLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLG 183

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDS--VSWNALFSRFQDYESPDQGLRI 240
            +    V N  +S Y + G +     VFEAI   D   VSWN++F  +  +        +
Sbjct: 184 VDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGL 243

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           +  ML + FKP++ TFI +  +C +   +  G+ +H+H I    D +     + + MY K
Sbjct: 244 YCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSK 303

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
           S     A + FD + ++   ++T +I+ YA+ G+ + AL  F  M   G K +  TL S 
Sbjct: 304 SEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSL 363

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLD-MFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
           ++GC    +L  G+ + + A   G   D + +  AL+ MY+KCGSI +A  +F  +  + 
Sbjct: 364 ISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKT 423

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             +W  MI GY  +G+  +AL+ F  M+D  Y P+ ITF+ VL AC+H G +E+G ++F 
Sbjct: 424 VVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFH 483

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
            +K++Y I+P + H++CM+D+LGR GK  E    I      P+A +W  LL AC  H N+
Sbjct: 484 IMKQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNV 543

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           ++ E+ AE L  LEP+M + YV  ++I A  G W+ F+ +R+++  + IKK P  S I+V
Sbjct: 544 KIAEQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPGESVIQV 603

Query: 600 DG 601
           +G
Sbjct: 604 NG 605



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 117/453 (25%), Positives = 206/453 (45%), Gaps = 12/453 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A +VF+ MPE +  +WNA+L+G+ +SG   K   LF  M+  E      ++ T+++ 
Sbjct: 103 VDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQS 162

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK--DPDVV 118
            +    +K  + +HA+ IRLG  +   ++ + +  Y KCG  D+A  VF  I   D  VV
Sbjct: 163 ASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVV 222

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +W ++       G   +A  ++ LM     KP+     +L  +         G  IH+  
Sbjct: 223 SWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHA 282

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
              G + D    N  +SMY ++        +F+ +  +  VSW  + S + +    D+ L
Sbjct: 283 IHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEAL 342

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHT-IKHSLDGNHVVGTSLVDM 297
            +F+ M+  G KP++ T + ++  C     +  GK + A   I      N ++  +L+DM
Sbjct: 343 ALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDM 402

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K G + +A   FD+   K +  +T +I  YA  G    ALK F KM     K N  T 
Sbjct: 403 YSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITF 462

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHL---LDMFVSTALVAMYAKCGSIDDA-EAVFK 413
            + L  C+   +L  G     I  +  ++   LD +  + +V +  + G +++A E +  
Sbjct: 463 LAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHY--SCMVDLLGRKGKLEEALELIRN 520

Query: 414 GSALRDTASWNMMIGGYVKH---GLGEKALEAF 443
            SA  D   W  ++     H    + E+A E+ 
Sbjct: 521 MSAKPDAGIWGALLNACKIHRNVKIAEQAAESL 553


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 188/586 (32%), Positives = 309/586 (52%), Gaps = 37/586 (6%)

Query: 50  SKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF 109
           SK  + T++K           + +HA  IR   +L    +  ++ +Y+   L   AL +F
Sbjct: 4   SKALIKTLIKNPTRIKSKSQAKQLHAQFIRTQ-SLSHTSASIVISIYTNLKLLHEALLLF 62

Query: 110 YRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
             +K P V+AW ++I C   Q    +A   F  MR S   P+  V  S++++ T   D R
Sbjct: 63  KTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLR 122

Query: 170 CGESIHAVICKYGFESDTLVGNALVSMYME----NGRVSYGS------------------ 207
            GES+H  I + G + D   GNAL++MY +      ++S G+                  
Sbjct: 123 FGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVK 182

Query: 208 --------------RVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
                         RVFE +  +D VS+N + + +      +  LR+  +M     KP+ 
Sbjct: 183 AETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDS 242

Query: 254 CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
            T   +L   S   DV  GK++H + I+  +D +  +G+SLVDMY KS  +ED+   F  
Sbjct: 243 FTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSR 302

Query: 314 LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG 373
           L  +D  ++ +++  Y Q G    AL+ FR+M    +K      +S +  C+ +ATL  G
Sbjct: 303 LYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLG 362

Query: 374 RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKH 433
           + LH   ++ G   ++F+++ALV MY+KCG+I  A  +F    + D  SW  +I G+  H
Sbjct: 363 KQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALH 422

Query: 434 GLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKH 493
           G G +A+  F  M  +G  P+++ FV VL+ACSH+GL++E   +F+S+ K+YG+   ++H
Sbjct: 423 GHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEH 482

Query: 494 FACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELE 553
           +A + D+LGRAGK  E  NFI++  + P   VW  LL +CS H N+EL EK AEK+  ++
Sbjct: 483 YAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVD 542

Query: 554 PKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            +    YV   ++ A+ GRW + + +R  +  +G++K+P+CSWIE+
Sbjct: 543 SENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEM 588



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 158/305 (51%), Gaps = 3/305 (0%)

Query: 5   KRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANS 64
           +RVF+ MP  +VVS+N ++ GYA+SG  +  + +   M   + K   F+LS+VL  F+  
Sbjct: 196 RRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEY 255

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
             +  G+ +H   IR G   D ++  SLVDMY+K    +++ +VF R+   D ++W +++
Sbjct: 256 VDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLV 315

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
               Q G   EA ++F  M  + VKP     +S++ A         G+ +H  + + GF 
Sbjct: 316 AGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFG 375

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
           S+  + +ALV MY + G +    ++F+ +   D VSW A+      +    + + +F +M
Sbjct: 376 SNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEM 435

Query: 245 LLKGFKPNMCTFIVILKACS--SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
             +G KPN   F+ +L ACS   L D  +G   ++ T  + L+       ++ D+  ++G
Sbjct: 436 KRQGVKPNQVAFVAVLTACSHVGLVDEAWG-YFNSMTKVYGLNQELEHYAAVADLLGRAG 494

Query: 303 CLEDA 307
            LE+A
Sbjct: 495 KLEEA 499


>gi|224098357|ref|XP_002311156.1| predicted protein [Populus trichocarpa]
 gi|222850976|gb|EEE88523.1| predicted protein [Populus trichocarpa]
          Length = 535

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 186/529 (35%), Positives = 280/529 (52%), Gaps = 1/529 (0%)

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
           G  +H  A + G   D  ++  ++ MY++CG  D A ++F  IK  D+VAW AII    Q
Sbjct: 7   GTEIHDFARQQGIDSDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAIIAAFVQ 66

Query: 130 QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
            G  QEA  +F  M+   ++ N+ +L S + A  E    + G+S+H    K   + D  V
Sbjct: 67  SGYPQEALSLFRSMQNEGLQANKVILLSSLPACAEVSSLKLGKSMHCCAVKANVDLDISV 126

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
           G ALVSMY + G  +    +F  +  +D V+WNA+ + +     P   L +F+++ L   
Sbjct: 127 GTALVSMYAKCGFFALALTLFNRMPCKDVVTWNAMINGYAQIGEPFPALEMFHKLQLSEL 186

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
            PN  T + +L A + L+D+  G  +H   IK   +    V T+L+DMY K G L  A  
Sbjct: 187 NPNSGTMVGLLPAFALLNDLDQGSCIHGKIIKCGFESECHVKTALIDMYAKCGSLSGAEF 246

Query: 310 AFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
            F      KD  ++  +I  Y  +G A  A   F +M+LE I+ N  T+ + L   + ++
Sbjct: 247 LFHRTGCRKDEVSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQPNIVTIVTVLPAVAHLS 306

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
            L  G  LH+  ++ G      V   L+ MYAKCG +D +E +F     +DT SWN+M+ 
Sbjct: 307 ALRAGMTLHAYVIRMGFQSKTPVGNCLIDMYAKCGWLDHSEKIFHEMKNKDTVSWNVMLA 366

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGIT 488
           GY  HG G  A+E F  M D     D  +F+ VLSAC H GLI EG+K F S+ K + + 
Sbjct: 367 GYAVHGRGSCAIELFSRMQDSEIRLDSFSFINVLSACRHAGLIGEGRKIFDSMSKQHQLE 426

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEK 548
           P ++H+ACM D+LGRAG F E+ + I    + P+A VW  LLGA + H N++L E     
Sbjct: 427 PDLEHYACMADLLGRAGLFNEVLDLIKSMPMEPDAGVWGALLGASTMHSNVQLAEFALHH 486

Query: 549 LLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           L +LE K  ++Y   S+  A  GRW D    R+ ++  G++K P  SW+
Sbjct: 487 LDKLEHKNLTHYAALSNTYARSGRWADVGNTRSKITKTGLRKSPGYSWV 535



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 135/527 (25%), Positives = 237/527 (44%), Gaps = 42/527 (7%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ AK++F+ +   ++V+W+A++  + +SG  Q+ + LF SM++   + +K  L + L  
Sbjct: 39  VDTAKQLFQEIKGRDLVAWSAIIAAFVQSGYPQEALSLFRSMQNEGLQANKVILLSSLPA 98

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    +K G+ +H  A++    LD  +  +LV MY+KCG    AL +F R+   DVV W
Sbjct: 99  CAEVSSLKLGKSMHCCAVKANVDLDISVGTALVSMYAKCGFFALALTLFNRMPCKDVVTW 158

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    Q G    A ++F+ ++ S + PN   +  L+ A     D   G  IH  I K
Sbjct: 159 NAMINGYAQIGEPFPALEMFHKLQLSELNPNSGTMVGLLPAFALLNDLDQGSCIHGKIIK 218

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALFSRFQDYESPDQGLR 239
            GFES+  V  AL+ MY + G +S    +F      +D VSWN + + +           
Sbjct: 219 CGFESECHVKTALIDMYAKCGSLSGAEFLFHRTGCRKDEVSWNVMIAGYMHSGHAIDAFS 278

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
            F QM L+  +PN+ T + +L A + LS +  G  LHA+ I+        VG  L+DMY 
Sbjct: 279 AFCQMKLENIQPNIVTIVTVLPAVAHLSALRAGMTLHAYVIRMGFQSKTPVGNCLIDMYA 338

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G L+ +   F  + NKD  ++  ++  YA  G    A++ F +M+   I+ + F+  +
Sbjct: 339 KCGWLDHSEKIFHEMKNKDTVSWNVMLAGYAVHGRGSCAIELFSRMQDSEIRLDSFSFIN 398

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHL-LDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
            L+ C     +  GR +     K   L  D+     +  +  + G  ++   + K   + 
Sbjct: 399 VLSACRHAGLIGEGRKIFDSMSKQHQLEPDLEHYACMADLLGRAGLFNEVLDLIKSMPME 458

Query: 419 -DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
            D   W  ++G    H                                S++ L E    H
Sbjct: 459 PDAGVWGALLGASTMH--------------------------------SNVQLAEFALHH 486

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNAL 524
              ++        + H+A + +   R+G++ ++ N  T +K+T   L
Sbjct: 487 LDKLEH-----KNLTHYAALSNTYARSGRWADVGN--TRSKITKTGL 526



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 145/293 (49%), Gaps = 3/293 (1%)

Query: 269 VGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITS 328
           +G G ++H    +  +D +  V T ++ MY + G ++ A   F  +  +DL A++AII +
Sbjct: 4   LGRGTEIHDFARQQGIDSDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAIIAA 63

Query: 329 YAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLD 388
           + Q+G  + AL  FR M+ EG+++N+  L S L  C+ V++L  G+ +H  AVK    LD
Sbjct: 64  FVQSGYPQEALSLFRSMQNEGLQANKVILLSSLPACAEVSSLKLGKSMHCCAVKANVDLD 123

Query: 389 MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
           + V TALV+MYAKCG    A  +F     +D  +WN MI GY + G    ALE F  +  
Sbjct: 124 ISVGTALVSMYAKCGFFALALTLFNRMPCKDVVTWNAMINGYAQIGEPFPALEMFHKLQL 183

Query: 449 EGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFT 508
               P+  T V +L A + +  +++G      I K  G          +ID+  + G  +
Sbjct: 184 SELNPNSGTMVGLLPAFALLNDLDQGSCIHGKIIKC-GFESECHVKTALIDMYAKCGSLS 242

Query: 509 EIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYV 561
             E     T    + + W N++ A   H    +D   A   ++LE  ++ N V
Sbjct: 243 GAEFLFHRTGCRKDEVSW-NVMIAGYMHSGHAIDAFSAFCQMKLE-NIQPNIV 293


>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
          Length = 861

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 191/615 (31%), Positives = 328/615 (53%), Gaps = 22/615 (3%)

Query: 6   RVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSG 65
           RVF+ +PE N VSW+A++ G  ++      +  F  M+ +    S+   ++VL+  A   
Sbjct: 194 RVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALS 253

Query: 66  YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT 125
            ++ G  +HA A++   A D  +  + +DMY+KC    +A  +F   ++ +  ++ A+IT
Sbjct: 254 ELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMIT 313

Query: 126 CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
              Q+    +A  +F+ +  S +  ++  L+ + RA         G  I+ +  K     
Sbjct: 314 GYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSL 373

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           D  V NA + MY +   ++   RVF+ +  +D+VSWNA+ +  +      + L +F  ML
Sbjct: 374 DVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSML 433

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
               +P+  TF  ILKAC+  S +G+G ++H+  +K  +  N  VG SL+DMY K G +E
Sbjct: 434 RSRIEPDEFTFGSILKACTGGS-LGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIE 492

Query: 306 DAGV----------------AFDSLANKDL----FAYTAIITSYAQAGEAEMALKCFRKM 345
           +A                    + + NK L     ++ +II+ Y    ++E A   F +M
Sbjct: 493 EAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRM 552

Query: 346 RLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSI 405
              GI  ++FT A+ L+ C+ +A+   G+ +H+  +K     D+++ + LV MY+KCG +
Sbjct: 553 MEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDL 612

Query: 406 DDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC 465
            D+  +F+ S  RD  +WN MI GY  HG GE+A++ F  M+ E   P+ +TF+ +L AC
Sbjct: 613 HDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRAC 672

Query: 466 SHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV 525
           +HMGLI++G ++F  +K+ YG+ P + H++ M+DILG++GK       I E     + ++
Sbjct: 673 AHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVI 732

Query: 526 WENLLGACSWH-GNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLS 584
           W  LLG C+ H  N+E+ E+    LL L+P+  S Y   S++ A  G W   S +R  + 
Sbjct: 733 WRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMR 792

Query: 585 SQGIKKEPSCSWIEV 599
              +KKEP CSW+E+
Sbjct: 793 GFKLKKEPGCSWVEL 807



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 153/585 (26%), Positives = 276/585 (47%), Gaps = 32/585 (5%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A   F  MP  +VVSWN++L+GY ++G+  K + +F  M     +F   + + +LK  + 
Sbjct: 91  ANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSF 150

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G  +H + +R+GC  D   + +L+DMY+K      +L+VF  I + + V+W AI
Sbjct: 151 LEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAI 210

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q      A K F  M++ +   +Q +  S++R+     + R G  +HA   K  F
Sbjct: 211 IAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDF 270

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            +D +V  A + MY +   +     +F+   + +  S+NA+ + +   E   + L +F++
Sbjct: 271 AADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHR 330

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           ++  G   +  +   + +AC+ +  +  G Q++   IK SL  +  V  + +DMY K   
Sbjct: 331 LMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQA 390

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L +A   FD +  +D  ++ AII ++ Q G+    L  F  M    I+ +EFT  S L  
Sbjct: 391 LAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKA 450

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV----FKGSALRD 419
           C+   +L  G  +HS  VK+G   +  V  +L+ MY+KCG I++AE +    F+ + +  
Sbjct: 451 CTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSG 509

Query: 420 T----------------ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           T                 SWN +I GYV     E A   F  M++ G  PD+ T+  VL 
Sbjct: 510 TMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLD 569

Query: 464 ACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPN 522
            C+++     GK+ H   IKK   +   +   + ++D+  + G   +    + E  L  +
Sbjct: 570 TCANLASAGLGKQIHAQVIKK--ELQSDVYICSTLVDMYSKCGDLHD-SRLMFEKSLRRD 626

Query: 523 ALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            + W  ++   + HG         E+ ++L  +M    + P+ ++
Sbjct: 627 FVTWNAMICGYAHHGK-------GEEAIQLFERMILENIKPNHVT 664



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 131/451 (29%), Positives = 219/451 (48%), Gaps = 25/451 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A+ +F +   LN  S+NA++ GY++   G K + LF  +      F + SLS V + 
Sbjct: 290 MQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRA 349

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    +  G  ++ +AI+   +LD  ++ + +DMY KC     A +VF  ++  D V+W
Sbjct: 350 CALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSW 409

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            AII   +Q G   E   +F  M  S ++P++F   S+++A T  G    G  IH+ I K
Sbjct: 410 NAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACT-GGSLGYGMEIHSSIVK 468

Query: 181 YGFESDTLVGNALVSMYMENGRVSYG----SRVFEAI----------------AHQDSVS 220
            G  S++ VG +L+ MY + G +       SR F+                    +  VS
Sbjct: 469 SGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVS 528

Query: 221 WNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTI 280
           WN++ S +   E  +    +F +M+  G  P+  T+  +L  C++L+  G GKQ+HA  I
Sbjct: 529 WNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVI 588

Query: 281 KHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALK 340
           K  L  +  + ++LVDMY K G L D+ + F+    +D   + A+I  YA  G+ E A++
Sbjct: 589 KKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQ 648

Query: 341 CFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS--TALVAM 398
            F +M LE IK N  T  S L  C+ +  +  G L +   +K  + LD  +   + +V +
Sbjct: 649 LFERMILENIKPNHVTFISILRACAHMGLIDKG-LEYFYMMKRDYGLDPQLPHYSNMVDI 707

Query: 399 YAKCGSIDDAEAVFKGSALR-DTASWNMMIG 428
             K G +  A  + +      D   W  ++G
Sbjct: 708 LGKSGKVKRALELIREMPFEADDVIWRTLLG 738



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 129/463 (27%), Positives = 230/463 (49%), Gaps = 8/463 (1%)

Query: 50  SKFSLSTVLKGFANS-GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKV 108
           + F L+ +L+ + NS  ++ A  V   M +R   + +K     +++ YSK      A   
Sbjct: 40  TTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNK-----MINGYSKSNDMFKANSF 94

Query: 109 FYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ 168
           F  +   DVV+W ++++   Q G   ++ ++F  M    ++ +      +++  +   D 
Sbjct: 95  FNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDT 154

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228
             G  IH ++ + G ++D +  +AL+ MY +  R     RVF+ I  ++SVSW+A+ +  
Sbjct: 155 SLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGC 214

Query: 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH 288
                    L+ F +M       +   +  +L++C++LS++  G QLHAH +K     + 
Sbjct: 215 VQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADG 274

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
           +V T+ +DMY K   ++DA + FD+  N +  +Y A+IT Y+Q      AL  F ++   
Sbjct: 275 IVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSS 334

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
           G+  +E +L+     C+ V  L+ G  ++ +A+K+   LD+ V+ A + MY KC ++ +A
Sbjct: 335 GLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEA 394

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
             VF     RD  SWN +I  + ++G G + L  F  ML     PDE TF  +L AC+  
Sbjct: 395 FRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG- 453

Query: 469 GLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIE 511
           G +  G +  SSI K  G+         +ID+  + G   E E
Sbjct: 454 GSLGYGMEIHSSIVK-SGMASNSSVGCSLIDMYSKCGMIEEAE 495



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 115/262 (43%), Gaps = 32/262 (12%)

Query: 263 CSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL-------- 314
           C+    +  GKQ HAH I         V   L+ +Y  S     A + FD +        
Sbjct: 16  CAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSW 75

Query: 315 ---------------AN--------KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
                          AN        +D+ ++ ++++ Y Q GE+  +++ F  M  EGI+
Sbjct: 76  NKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIE 135

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            +  T A  L  CS +   + G  +H I V+ G   D+  ++AL+ MYAK     ++  V
Sbjct: 136 FDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRV 195

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F+G   +++ SW+ +I G V++ L   AL+ F+ M        +  +  VL +C+ +  +
Sbjct: 196 FQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSEL 255

Query: 472 EEGKK-HFSSIKKIYGITPTIK 492
             G + H  ++K  +     ++
Sbjct: 256 RLGGQLHAHALKSDFAADGIVR 277



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 74/201 (36%), Gaps = 33/201 (16%)

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+    L  G+  H+  + +G     FV   L+ +Y        A  VF    LRD  SW
Sbjct: 16  CAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSW 75

Query: 424 NMMIGGYVK-------------------------------HGLGEKALEAFRMMLDEGYV 452
           N MI GY K                               +G   K++E F  M  EG  
Sbjct: 76  NKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIE 135

Query: 453 PDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIEN 512
            D  TF ++L  CS +     G +    + ++ G    +   + ++D+  +  +F E   
Sbjct: 136 FDGRTFAIILKVCSFLEDTSLGMQIHGIVVRV-GCDTDVVAASALLDMYAKGKRFVESLR 194

Query: 513 FITETKLTPNALVWENLLGAC 533
            + +     N++ W  ++  C
Sbjct: 195 -VFQGIPEKNSVSWSAIIAGC 214


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 188/588 (31%), Positives = 314/588 (53%), Gaps = 5/588 (0%)

Query: 15   NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVH 74
            +V+ WN  L+ + + G+  + +  F  M +        +   +L   A    ++ G+ +H
Sbjct: 899  DVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIH 958

Query: 75   AMAIRLGCALDKFLSCS--LVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
             + +R G  LD+ +S    L++MY K G    A  VF ++ + D+++W  +I+     G 
Sbjct: 959  GIVMRSG--LDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGL 1016

Query: 133  CQEAAKIFNLMRESSVKPNQFVLTSLVRA-TTETGDQRCGESIHAVICKYGFESDTLVGN 191
             + +  +F  +   S+ P+QF + S++RA ++  G       IHA   K G   D+ V  
Sbjct: 1017 EECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVST 1076

Query: 192  ALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKP 251
            AL+ +Y + G++     +F      D  SWNA+   +       + LR++  M   G + 
Sbjct: 1077 ALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERS 1136

Query: 252  NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF 311
            +  T +   KA   L  +  GKQ+HA  +K   + +  V + ++DMY K G +E A   F
Sbjct: 1137 DQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVF 1196

Query: 312  DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLA 371
              + + D  A+T +I+   + G+ E AL  + +MRL  ++ +E+T A+ +  CS +  L 
Sbjct: 1197 SEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALE 1256

Query: 372  NGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV 431
             GR +H+  VK     D FV T+LV MYAKCG+I+DA  +FK +  R  ASWN MI G  
Sbjct: 1257 QGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLA 1316

Query: 432  KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI 491
            +HG  ++AL+ F+ M   G +PD +TF+ VLSACSH GL+ E  ++F S++K YGI P I
Sbjct: 1317 QHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEI 1376

Query: 492  KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551
            +H++C++D L RAG+  E E  I+      +A ++  LL AC    + E  ++ AEKLL 
Sbjct: 1377 EHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLA 1436

Query: 552  LEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            LEP   + YV  S++ A   +W + +  R ++    +KK+P  SW+++
Sbjct: 1437 LEPSDSAAYVLLSNVYAAANQWENVASARNMMRKVNVKKDPGFSWVDL 1484



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 143/550 (26%), Positives = 260/550 (47%), Gaps = 51/550 (9%)

Query: 4    AKRVFKSMPELN--VVSWNALLNGYAESGD-GQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
            A+++F + P+ N  +V+WNA+L+  A   D      HLF  ++      ++ +L+ V K 
Sbjct: 710  ARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKM 769

Query: 61   FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
               S    A + +H  A+++G   D F++ +LV++Y+K GL   A  +F  +   DVV W
Sbjct: 770  CLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLW 829

Query: 121  GAII-----TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH 175
              ++     TCL+      EA  +F+    +  +P+   L +L R        +C ++I 
Sbjct: 830  NVMMKAYVDTCLE-----YEAMLLFSEFHRTGFRPDDVTLRTLSRVV------KCKKNIL 878

Query: 176  AVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD 235
             +     + +          MY ++G               D + WN   SRF       
Sbjct: 879  ELKQFKAYATKLF-------MYDDDG--------------SDVIVWNKALSRFLQRGEAW 917

Query: 236  QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
            + +  F  M+      +  TF+V+L   + L+ +  GKQ+H   ++  LD    VG  L+
Sbjct: 918  EAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLI 977

Query: 296  DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
            +MY K+G +  A   F  +   DL ++  +I+    +G  E ++  F  +  + +  ++F
Sbjct: 978  NMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQF 1037

Query: 356  TLASCLNGCSPVATLANGRLL----HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            T+AS L  CS   +L  G  L    H+ A+K G +LD FVSTAL+ +Y+K G +++AE +
Sbjct: 1038 TVASVLRACS---SLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFL 1094

Query: 412  FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
            F      D ASWN ++ GY+  G   KAL  + +M + G   D+IT V    A   +  +
Sbjct: 1095 FVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGL 1154

Query: 472  EEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
            ++GK+ H   +K+ + +   +   + ++D+  + G+        +E   +P+ + W  ++
Sbjct: 1155 KQGKQIHAVVVKRGFNLDLFVT--SGVLDMYLKCGEMESARRVFSEIP-SPDDVAWTTMI 1211

Query: 531  GACSWHGNIE 540
              C  +G  E
Sbjct: 1212 SGCVENGQEE 1221



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 120/463 (25%), Positives = 201/463 (43%), Gaps = 38/463 (8%)

Query: 56   TVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP 115
            ++L+    +  +  G+  HA  +  G   D+F++ +L+ MY+KCG   +A K+F    D 
Sbjct: 661  SILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDT 720

Query: 116  --DVVAWGAIITCLDQQG-CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172
              D+V W AI++ L        +   +F L+R S V   +  L  + +    +      E
Sbjct: 721  NRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASE 780

Query: 173  SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
            S+H    K G + D  V  ALV++Y + G +     +F+ +A +D V WN +   + D  
Sbjct: 781  SLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTC 840

Query: 233  SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
               + + +F +    GF+P+  T   + +      ++   KQ  A+  K           
Sbjct: 841  LEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATK----------- 889

Query: 293  SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
              + MYD  G               D+  +   ++ + Q GEA  A+ CF  M    +  
Sbjct: 890  --LFMYDDDG--------------SDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVAC 933

Query: 353  NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA--LVAMYAKCGSIDDAEA 410
            +  T    L   + +  L  G+ +H I +++G  LD  VS    L+ MY K GS+  A +
Sbjct: 934  DGLTFVVMLTVVAGLNCLELGKQIHGIVMRSG--LDQVVSVGNCLINMYVKAGSVSRARS 991

Query: 411  VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM-- 468
            VF      D  SWN MI G    GL E ++  F  +L +  +PD+ T   VL ACS +  
Sbjct: 992  VFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEG 1051

Query: 469  GLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIE 511
            G     + H  ++K   G+         +ID+  + GK  E E
Sbjct: 1052 GYYLATQIHACAMKA--GVVLDSFVSTALIDVYSKRGKMEEAE 1092



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 160/320 (50%), Gaps = 11/320 (3%)

Query: 1    MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
            ME A+ +F +    ++ SWNA+++GY  SGD  K + L+  M++  ++  + +L    K 
Sbjct: 1088 MEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKA 1147

Query: 61   FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                  +K G+ +HA+ ++ G  LD F++  ++DMY KCG  ++A +VF  I  PD VAW
Sbjct: 1148 AGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAW 1207

Query: 121  GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
              +I+   + G  + A   ++ MR S V+P+++   +LV+A +       G  IHA I K
Sbjct: 1208 TTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVK 1267

Query: 181  YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
                 D  V  +LV MY + G +     +F+    +   SWNA+      + +  + L+ 
Sbjct: 1268 LNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQF 1327

Query: 241  FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG------TSL 294
            F  M  +G  P+  TFI +L ACS    V       A+   +S+  N+ +       + L
Sbjct: 1328 FKYMKSRGVMPDRVTFIGVLSACSHSGLVS-----EAYENFYSMQKNYGIEPEIEHYSCL 1382

Query: 295  VDMYDKSGCLEDAGVAFDSL 314
            VD   ++G +E+A     S+
Sbjct: 1383 VDALSRAGRIEEAEKVISSM 1402


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 186/532 (34%), Positives = 288/532 (54%), Gaps = 6/532 (1%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYS--KCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
           +HA  +R G   D F +  +V   S  + G    A  VF +I +P      +II     +
Sbjct: 7   IHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRGCTDK 66

Query: 131 GCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVG 190
              QEA   +  M    + P+++   SL ++   + +   G+ IH    K GF SDT   
Sbjct: 67  NLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSSE---GKQIHCHSTKLGFASDTYAQ 123

Query: 191 NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL-KGF 249
           N L++MY   G +    +VF+ +  +  VSW  +      ++ P++ +R+F +M+  +  
Sbjct: 124 NTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENV 183

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
           KPN  T + +L AC+   D+   K++H +  +H    + V+ T L+D+Y K GC++ A  
Sbjct: 184 KPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARD 243

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369
            FD    K+LF++  +I  + +    E AL  FR+M+ +GIK ++ T+AS L  C+ +  
Sbjct: 244 LFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGA 303

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           L  G+ LH+   K    +D+ + TALV MYAKCGSI+ A  VF     +D  +W  +I G
Sbjct: 304 LELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILG 363

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITP 489
               G  E AL+ F  M  +G  PD ITFV VL+ACSH G ++EG  HF+S+   YGI P
Sbjct: 364 LAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQP 423

Query: 490 TIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKL 549
           TI+H+  ++DILGRAG+  E E  I    + P+  V   LLGAC  HGN+E  E+ A++L
Sbjct: 424 TIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAAKQL 483

Query: 550 LELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           LE++P     YV  S+I  +  +W +    R L++ +G++K P CS IEV G
Sbjct: 484 LEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVHG 535



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/451 (27%), Positives = 221/451 (49%), Gaps = 6/451 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+ VF  +P     + N+++ G  +    Q+ +  +  M        +++  ++ K 
Sbjct: 38  LQYARLVFSQIPNPTSYTCNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKS 97

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             NS     G+ +H  + +LG A D +   +L++MYS CG   +A KVF +++D  VV+W
Sbjct: 98  CRNSS---EGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSW 154

Query: 121 GAIITCLDQQGCCQEAAKIFN-LMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
             +I    Q     EA ++F+ +M+  +VKPN+  L +++ A     D    + IH  I 
Sbjct: 155 ATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYID 214

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           ++GF    ++   L+ +Y + G V     +F+    ++  SWN + +   +  + ++ L 
Sbjct: 215 EHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALL 274

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F +M  KG K +  T   +L AC+ L  +  GK LHA+  K  +D +  +GT+LVDMY 
Sbjct: 275 LFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYA 334

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G +E A   F  +  KD+  +TA+I   A  G+AE AL+ F +M ++G+K +  T   
Sbjct: 335 KCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVG 394

Query: 360 CLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL- 417
            L  CS    +  G    +S++   G    +     LV +  + G I +AE + K   + 
Sbjct: 395 VLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMA 454

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
            D      ++G    HG  E A  A + +L+
Sbjct: 455 PDQFVLGGLLGACRIHGNLEAAERAAKQLLE 485


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 190/624 (30%), Positives = 326/624 (52%), Gaps = 51/624 (8%)

Query: 20  NALLNGYAE-----SGDGQKV-------MHLFCSMKDMEKKFSKFSLSTVLKGFANSGYI 67
           +AL N YA      +GDG +        +H    +K   +    F L+ +L  +A SG +
Sbjct: 6   HALCNRYAAILSSAAGDGGRTGVRVAGAVHCLI-LKTFLQAPPTFLLNHLLTAYAKSGRL 64

Query: 68  -KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
            +A +V   M        + F   +L+   +   L  +  ++F  + + D V++ A+IT 
Sbjct: 65  ARARRVFDEMP-----DPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITG 119

Query: 127 LDQQGCCQEAAKIFN-LMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
               G    + +++  L+RE SV+P +  L++++   +   D+  G S+H  + + GF +
Sbjct: 120 FSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGA 179

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAI-------------------------------A 214
              VG+ LV MY + G +    RVF+ +                                
Sbjct: 180 YAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMV 239

Query: 215 HQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ 274
            +DS++W  + +         + L +F +M  +G   +  TF  IL AC +L+ +  GKQ
Sbjct: 240 DRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQ 299

Query: 275 LHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGE 334
           +HA+  +   + N  VG++LVDMY K   +  A   F  +  +++ ++TA+I  Y Q   
Sbjct: 300 IHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNAC 359

Query: 335 AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA 394
           +E A++ F +M+++GIK ++FTL S ++ C+ +A+L  G   H +A+ +G +  + VS A
Sbjct: 360 SEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNA 419

Query: 395 LVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD 454
           LV +Y KCGSI+DA  +F   +  D  SW  ++ GY + G  ++ ++ F  ML  G  PD
Sbjct: 420 LVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPD 479

Query: 455 EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFI 514
            +TF+ VLSACS  GL+E+G  +F S++K +GI P   H+ CMID+  R+G+F E E FI
Sbjct: 480 GVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFI 539

Query: 515 TETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWN 574
            +   +P+A  W  LL +C   GN+E+ +  AE LLE +P+  ++YV    + A +G+W 
Sbjct: 540 KQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWT 599

Query: 575 DFSGVRALLSSQGIKKEPSCSWIE 598
           + + +R  +  + +KKEP CSWI+
Sbjct: 600 EVAHLRRGMRDRQVKKEPGCSWIK 623



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 120/448 (26%), Positives = 207/448 (46%), Gaps = 45/448 (10%)

Query: 5   KRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCS-MKDMEKKFSKFSLSTVLKGFAN 63
           +R+F SMPE + VS+NAL+ G++ +G   + + L+ + +++   + ++ +LS ++   + 
Sbjct: 99  ERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASA 158

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK---------- 113
                 G  VH   +RLG     F+   LVDMY+K GL  +A +VF  ++          
Sbjct: 159 LSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTL 218

Query: 114 ---------------------DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQ 152
                                D D + W  ++T L Q G   EA  +F  MR   V  +Q
Sbjct: 219 ITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQ 278

Query: 153 FVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEA 212
           +   S++ A         G+ IHA I +  +E +  VG+ALV MY +   +     VF  
Sbjct: 279 YTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRR 338

Query: 213 IAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFG 272
           +  ++ +SW A+   +      ++ +R F +M + G KP+  T   ++ +C++L+ +  G
Sbjct: 339 MTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEG 398

Query: 273 KQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQA 332
            Q H   +   L     V  +LV +Y K G +EDA   FD ++  D  ++TA++T YAQ 
Sbjct: 399 AQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQF 458

Query: 333 GEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG-------RLLHSIAVKTGH 385
           G+A+  +  F KM   G+K +  T    L+ CS    +  G       +  H I     H
Sbjct: 459 GKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDH 518

Query: 386 LLDMFVSTALVAMYAKCGSIDDAEAVFK 413
                  T ++ +Y++ G   +AE   K
Sbjct: 519 Y------TCMIDLYSRSGRFKEAEEFIK 540



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 167/343 (48%), Gaps = 10/343 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E AK +F+ M + + ++W  ++ G  ++G   + + +F  M+       +++  ++L  
Sbjct: 228 IEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTA 287

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 ++ G+ +HA   R     + F+  +LVDMYSKC     A  VF R+   ++++W
Sbjct: 288 CGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISW 347

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    Q  C +EA + F+ M+   +KP+ F L S++ +         G   H +   
Sbjct: 348 TAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALV 407

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G      V NALV++Y + G +    R+F+ ++  D VSW AL + +  +    + + +
Sbjct: 408 SGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDL 467

Query: 241 FYQMLLKGFKPNMCTFIVILKACSS--LSDVG---FGKQLHAHTIKHSLDGNHVVGTSLV 295
           F +ML  G KP+  TFI +L ACS   L + G   F      H I   +D ++   T ++
Sbjct: 468 FEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIV-PIDDHY---TCMI 523

Query: 296 DMYDKSGCLEDAGVAFDSLAN-KDLFAYTAIITSYAQAGEAEM 337
           D+Y +SG  ++A      + +  D F +  +++S    G  E+
Sbjct: 524 DLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEI 566


>gi|302763819|ref|XP_002965331.1| hypothetical protein SELMODRAFT_82859 [Selaginella moellendorffii]
 gi|300167564|gb|EFJ34169.1| hypothetical protein SELMODRAFT_82859 [Selaginella moellendorffii]
          Length = 806

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 194/590 (32%), Positives = 308/590 (52%), Gaps = 8/590 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++LA   F    EL    WNA+++  A +G  ++ + LF  M+  + + S  S +  L  
Sbjct: 201 IDLAMAAFDDNRELGTAPWNAIMSALAGAGHHRRAIELFFQME--QHQCSDRSCAIALGA 258

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A +G+++ G  +H             +  +L+ MY +CG  D AL+VF  +   +VV+W
Sbjct: 259 CAAAGHLRGGIQIHDKIQSEIHGTRVLVLNALISMYVRCGKLDEALRVFADMPHRNVVSW 318

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC---GESIHAV 177
            ++I  + Q G    + K+F+ M    + PN+    S+V A    G       G  IH+ 
Sbjct: 319 TSMIAAVAQTGHYSFSVKLFDGMIAEGINPNEKTYASVVSAIAHLGRDAILDRGRKIHSQ 378

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDS--VSWNALFSRFQDYESPD 235
           I   G ++D +V N+L++MY  +G ++    VF++I       VS+  + S +     P 
Sbjct: 379 ITASGIDADPIVQNSLINMYARSGLLAEAREVFDSILENSKTVVSFTTMISAYAHNGHPR 438

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG-TSL 294
           Q L IF +M  +G  PN  TF  +L AC ++ D+  G  +H   I+  LD +      SL
Sbjct: 439 QALEIFREMTARGVAPNEITFATVLAACVAIGDLASGAWIHERMIESGLDSSDPFAYNSL 498

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           VDMY K G L  A   F+++  KDL A+T II +  Q+G    AL  + +M   GI  + 
Sbjct: 499 VDMYAKCGDLGFAARVFETMKTKDLVAWTTIIAANVQSGNNRAALDLYDRMLQSGIHPDI 558

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            TL++ L  C+ +  LA G  +H  A+++    D     AL AMYAKCGS++ A  +++ 
Sbjct: 559 ATLSTLLVACANLGDLAMGEKIHRQALRSKLEQDAHFQNALAAMYAKCGSLEKATRLYRR 618

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
               D A+W  M+  + + GL   ALE +  M  EG  P+E+TF+ VL +CS  GL+ EG
Sbjct: 619 CRGSDVATWTSMLAAHSQQGLASVALELYAEMESEGVRPNEVTFIPVLISCSQAGLVAEG 678

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
           ++ F SI   YG  P+ +HF CM+D+LGRAGK  + E  +      P+ + W++LL +C 
Sbjct: 679 REFFHSITSDYGSQPSAEHFGCMVDVLGRAGKLRDAEELLDSMPFYPDEIAWQSLLSSCK 738

Query: 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLS 584
            H + E+  + AE LLEL+P+  S +V  S I A  GR +D   ++  L+
Sbjct: 739 LHTDAEIGTRAAECLLELDPESTSQFVALSQIYAAAGRNSDIDEIKRELA 788



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 154/572 (26%), Positives = 266/572 (46%), Gaps = 28/572 (4%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           +F +MP+     WN L+  +  +   +  + L+   + M  + ++ S    +      G 
Sbjct: 107 LFDAMPDRRPFCWNVLMKEFLAADRPRDTLELY---RRMSVENTQPSACGFMWAIVACGR 163

Query: 67  IK---AGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           IK    G+ +H   +  G  ++  +  +LV MY++CG  D A+  F   ++     W AI
Sbjct: 164 IKDLAQGRSIH-YRVATGRGINSSIQSALVTMYAQCGRIDLAMAAFDDNRELGTAPWNAI 222

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           ++ L   G  + A ++F  M +         +     A    G  R G  IH  I     
Sbjct: 223 MSALAGAGHHRRAIELFFQMEQHQCSDRSCAIALG--ACAAAGHLRGGIQIHDKIQSEIH 280

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            +  LV NAL+SMY+  G++    RVF  + H++ VSW ++ +           +++F  
Sbjct: 281 GTRVLVLNALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQTGHYSFSVKLFDG 340

Query: 244 MLLKGFKPNMCTFIVILKACSSLSD---VGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           M+ +G  PN  T+  ++ A + L     +  G+++H+      +D + +V  SL++MY +
Sbjct: 341 MIAEGINPNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQNSLINMYAR 400

Query: 301 SGCLEDAGVAFDSL--ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
           SG L +A   FDS+   +K + ++T +I++YA  G    AL+ FR+M   G+  NE T A
Sbjct: 401 SGLLAEAREVFDSILENSKTVVSFTTMISAYAHNGHPRQALEIFREMTARGVAPNEITFA 460

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTG-HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           + L  C  +  LA+G  +H   +++G    D F   +LV MYAKCG +  A  VF+    
Sbjct: 461 TVLAACVAIGDLASGAWIHERMIESGLDSSDPFAYNSLVDMYAKCGDLGFAARVFETMKT 520

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK- 476
           +D  +W  +I   V+ G    AL+ +  ML  G  PD  T   +L AC+++G +  G+K 
Sbjct: 521 KDLVAWTTIIAANVQSGNNRAALDLYDRMLQSGIHPDIATLSTLLVACANLGDLAMGEKI 580

Query: 477 HFSSIK-KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
           H  +++ K+          A M    G   K T +      + +      W ++L A S 
Sbjct: 581 HRQALRSKLEQDAHFQNALAAMYAKCGSLEKATRLYRRCRGSDVA----TWTSMLAAHSQ 636

Query: 536 HGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            G        A   LEL  +MES  V P++++
Sbjct: 637 QGL-------ASVALELYAEMESEGVRPNEVT 661



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 127/495 (25%), Positives = 225/495 (45%), Gaps = 21/495 (4%)

Query: 55  STVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
           + +L+   N   +  G+ VHA  +    A +  L   +  MY++C   D A+ +F  + D
Sbjct: 54  ANLLRQCGNQRALDHGRRVHAHIVSRRLARNALLGELVFQMYARCRCFDTAIALFDAMPD 113

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
                W  ++         ++  +++  M   + +P+       + A     D   G SI
Sbjct: 114 RRPFCWNVLMKEFLAADRPRDTLELYRRMSVENTQPSACGFMWAIVACGRIKDLAQGRSI 173

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H  +   G   ++ + +ALV+MY + GR+      F+      +  WNA+ S        
Sbjct: 174 HYRVAT-GRGINSSIQSALVTMYAQCGRIDLAMAAFDDNRELGTAPWNAIMSALAGAGHH 232

Query: 235 DQGLRIFYQMLLKGFKPNMC---TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-V 290
            + + +F+QM     + + C   +  + L AC++   +  G Q+H   I+  + G  V V
Sbjct: 233 RRAIELFFQM-----EQHQCSDRSCAIALGACAAAGHLRGGIQIH-DKIQSEIHGTRVLV 286

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
             +L+ MY + G L++A   F  + ++++ ++T++I + AQ G    ++K F  M  EGI
Sbjct: 287 LNALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQTGHYSFSVKLFDGMIAEGI 346

Query: 351 KSNEFTLASCLNGCSPV---ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
             NE T AS ++  + +   A L  GR +HS    +G   D  V  +L+ MYA+ G + +
Sbjct: 347 NPNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQNSLINMYARSGLLAE 406

Query: 408 AEAVFKGSALRDT---ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
           A  VF  S L ++    S+  MI  Y  +G   +ALE FR M   G  P+EITF  VL+A
Sbjct: 407 AREVFD-SILENSKTVVSFTTMISAYAHNGHPRQALEIFREMTARGVAPNEITFATVLAA 465

Query: 465 CSHMGLIEEGK-KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNA 523
           C  +G +  G   H   I+     +     +  ++D+  + G        + ET  T + 
Sbjct: 466 CVAIGDLASGAWIHERMIESGLDSSDPFA-YNSLVDMYAKCGDLG-FAARVFETMKTKDL 523

Query: 524 LVWENLLGACSWHGN 538
           + W  ++ A    GN
Sbjct: 524 VAWTTIIAANVQSGN 538



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 104/413 (25%), Positives = 194/413 (46%), Gaps = 22/413 (5%)

Query: 164 ETGDQRC---GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS 220
           + G+QR    G  +HA I       + L+G  +  MY           +F+A+  +    
Sbjct: 59  QCGNQRALDHGRRVHAHIVSRRLARNALLGELVFQMYARCRCFDTAIALFDAMPDRRPFC 118

Query: 221 WNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTI 280
           WN L   F   + P   L ++ +M ++  +P+ C F+  + AC  + D+  G+ +H + +
Sbjct: 119 WNVLMKEFLAADRPRDTLELYRRMSVENTQPSACGFMWAIVACGRIKDLAQGRSIH-YRV 177

Query: 281 KHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALK 340
                 N  + ++LV MY + G ++ A  AFD         + AI+++ A AG    A++
Sbjct: 178 ATGRGINSSIQSALVTMYAQCGRIDLAMAAFDDNRELGTAPWNAIMSALAGAGHHRRAIE 237

Query: 341 CFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYA 400
            F +M  E  + ++ + A  L  C+    L  G  +H       H   + V  AL++MY 
Sbjct: 238 LFFQM--EQHQCSDRSCAIALGACAAAGHLRGGIQIHDKIQSEIHGTRVLVLNALISMYV 295

Query: 401 KCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVV 460
           +CG +D+A  VF     R+  SW  MI    + G    +++ F  M+ EG  P+E T+  
Sbjct: 296 RCGKLDEALRVFADMPHRNVVSWTSMIAAVAQTGHYSFSVKLFDGMIAEGINPNEKTYAS 355

Query: 461 VLSACSHMG---LIEEGKKHFSSIKKIYGI--TPTIKHFACMIDILGRAGKFTEI-ENFI 514
           V+SA +H+G   +++ G+K  S I    GI   P +++   +I++  R+G   E  E F 
Sbjct: 356 VVSAIAHLGRDAILDRGRKIHSQITA-SGIDADPIVQN--SLINMYARSGLLAEAREVFD 412

Query: 515 TETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           +  + +   + +  ++ A + +G+         + LE+  +M +  V P++I+
Sbjct: 413 SILENSKTVVSFTTMISAYAHNGH-------PRQALEIFREMTARGVAPNEIT 458


>gi|302790816|ref|XP_002977175.1| hypothetical protein SELMODRAFT_106630 [Selaginella moellendorffii]
 gi|300155151|gb|EFJ21784.1| hypothetical protein SELMODRAFT_106630 [Selaginella moellendorffii]
          Length = 806

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 194/590 (32%), Positives = 308/590 (52%), Gaps = 8/590 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++LA   F    EL    WNA+++  A +G  ++ + LF  M+  + + S  S +  L  
Sbjct: 201 IDLAMAAFDDNRELGTAPWNAIMSALAGAGHHRRAIELFFQME--QHQCSDRSCAIALGA 258

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A +G+++ G  +H             +  +L+ MY +CG  D AL+VF  +   +VV+W
Sbjct: 259 CAAAGHLRGGIQIHDKIQSEIHGTRVLVLNALISMYVRCGKLDEALRVFADMPHRNVVSW 318

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC---GESIHAV 177
            ++I  + Q G    A K+F+ M    + PN+    S+V A    G       G  IH+ 
Sbjct: 319 TSMIAAVAQSGHYSFAVKLFDGMIAEGINPNEKTYASVVSAIAHLGRDAILDRGRKIHSQ 378

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDS--VSWNALFSRFQDYESPD 235
           I   G ++D +V N+L++MY  +G ++    VF++I       VS+  + + +     P 
Sbjct: 379 ITASGIDADPIVQNSLINMYARSGLLAEAREVFDSILENSKTVVSFTTMIAAYAHNGHPR 438

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG-TSL 294
           Q L IF +M  +G  PN  TF  +L AC ++ D+  G  +H   I+  LD +      SL
Sbjct: 439 QALEIFREMTARGVAPNEITFATVLAACVAIGDLASGAWIHERMIESGLDSSDPFAYNSL 498

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           VDMY K G L  A   F+++  KDL A+T II +  Q+G    AL  + +M   GI  + 
Sbjct: 499 VDMYAKCGDLGFAARVFETMKTKDLVAWTTIIAANVQSGNNRAALDLYDRMLQSGIHPDI 558

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            TL++ L  C+ +  LA G  +H  A+++    D     AL AMYAKCGS++ A  +++ 
Sbjct: 559 ATLSTLLVACANLGDLAMGEKIHRQALRSKLEQDAHFQNALAAMYAKCGSLEKATRLYRR 618

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
               D A+W  M+  + + GL   ALE +  M  EG  P+E+TF+ VL +CS  GL+ EG
Sbjct: 619 CRGSDVATWTSMLAAHSQQGLASVALELYAEMESEGVRPNEVTFIPVLISCSQAGLVAEG 678

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
           ++ F SI   YG  P+ +HF CM+D+LGRAGK  + E  +      P+ + W++LL +C 
Sbjct: 679 REFFHSITSDYGSQPSAEHFGCMVDVLGRAGKLRDAEELLDSMPFYPDEIAWQSLLSSCK 738

Query: 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLS 584
            H + E+  + AE LLEL+P+  S +V  S I A  GR +D   ++  L+
Sbjct: 739 LHTDAEIGTRAAECLLELDPESTSQFVALSQIYAAAGRNSDIDEIKRELA 788



 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 154/572 (26%), Positives = 265/572 (46%), Gaps = 28/572 (4%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           +F +MP+     WN L+  +  +   +  + L+   + M  + ++ S    +      G 
Sbjct: 107 LFDAMPDRRPFCWNVLMKEFLAADRPRDTLELY---RRMSVENTQPSACGFMWAIVACGR 163

Query: 67  IK---AGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           IK    G+ +H   +  G  ++  +  +LV MY++CG  D A+  F   ++     W AI
Sbjct: 164 IKDLAQGRSIH-YRVATGRGINSSIQSALVTMYAQCGRIDLAMAAFDDNRELGTAPWNAI 222

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           ++ L   G  + A ++F  M +         +     A    G  R G  IH  I     
Sbjct: 223 MSALAGAGHHRRAIELFFQMEQHQCSDRSCAIALG--ACAAAGHLRGGIQIHDKIQSEIH 280

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            +  LV NAL+SMY+  G++    RVF  + H++ VSW ++ +           +++F  
Sbjct: 281 GTRVLVLNALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQSGHYSFAVKLFDG 340

Query: 244 MLLKGFKPNMCTFIVILKACSSLSD---VGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           M+ +G  PN  T+  ++ A + L     +  G+++H+      +D + +V  SL++MY +
Sbjct: 341 MIAEGINPNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQNSLINMYAR 400

Query: 301 SGCLEDAGVAFDSL--ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
           SG L +A   FDS+   +K + ++T +I +YA  G    AL+ FR+M   G+  NE T A
Sbjct: 401 SGLLAEAREVFDSILENSKTVVSFTTMIAAYAHNGHPRQALEIFREMTARGVAPNEITFA 460

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTG-HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           + L  C  +  LA+G  +H   +++G    D F   +LV MYAKCG +  A  VF+    
Sbjct: 461 TVLAACVAIGDLASGAWIHERMIESGLDSSDPFAYNSLVDMYAKCGDLGFAARVFETMKT 520

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK- 476
           +D  +W  +I   V+ G    AL+ +  ML  G  PD  T   +L AC+++G +  G+K 
Sbjct: 521 KDLVAWTTIIAANVQSGNNRAALDLYDRMLQSGIHPDIATLSTLLVACANLGDLAMGEKI 580

Query: 477 HFSSIK-KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
           H  +++ K+          A M    G   K T +      + +      W ++L A S 
Sbjct: 581 HRQALRSKLEQDAHFQNALAAMYAKCGSLEKATRLYRRCRGSDVA----TWTSMLAAHSQ 636

Query: 536 HGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            G        A   LEL  +MES  V P++++
Sbjct: 637 QGL-------ASVALELYAEMESEGVRPNEVT 661



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 128/495 (25%), Positives = 226/495 (45%), Gaps = 21/495 (4%)

Query: 55  STVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
           + +L+   N   +  G+ VHA  +    A +  L   +  MY++C   D A+ +F  + D
Sbjct: 54  ANLLRQCGNQRALDHGRRVHAHIVSRRLARNALLGELVFQMYARCRCFDTAIALFDAMPD 113

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
                W  ++         ++  +++  M   + +P+       + A     D   G SI
Sbjct: 114 RRPFCWNVLMKEFLAADRPRDTLELYRRMSVENTQPSACGFMWAIVACGRIKDLAQGRSI 173

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H  +   G   ++ + +ALV+MY + GR+      F+      +  WNA+ S        
Sbjct: 174 HYRVAT-GRGINSSIQSALVTMYAQCGRIDLAMAAFDDNRELGTAPWNAIMSALAGAGHH 232

Query: 235 DQGLRIFYQMLLKGFKPNMC---TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-V 290
            + + +F+QM     + + C   +  + L AC++   +  G Q+H   I+  + G  V V
Sbjct: 233 RRAIELFFQM-----EQHQCSDRSCAIALGACAAAGHLRGGIQIH-DKIQSEIHGTRVLV 286

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
             +L+ MY + G L++A   F  + ++++ ++T++I + AQ+G    A+K F  M  EGI
Sbjct: 287 LNALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQSGHYSFAVKLFDGMIAEGI 346

Query: 351 KSNEFTLASCLNGCSPV---ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
             NE T AS ++  + +   A L  GR +HS    +G   D  V  +L+ MYA+ G + +
Sbjct: 347 NPNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQNSLINMYARSGLLAE 406

Query: 408 AEAVFKGSALRDT---ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
           A  VF  S L ++    S+  MI  Y  +G   +ALE FR M   G  P+EITF  VL+A
Sbjct: 407 AREVFD-SILENSKTVVSFTTMIAAYAHNGHPRQALEIFREMTARGVAPNEITFATVLAA 465

Query: 465 CSHMGLIEEGK-KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNA 523
           C  +G +  G   H   I+     +     +  ++D+  + G        + ET  T + 
Sbjct: 466 CVAIGDLASGAWIHERMIESGLDSSDPFA-YNSLVDMYAKCGDLG-FAARVFETMKTKDL 523

Query: 524 LVWENLLGACSWHGN 538
           + W  ++ A    GN
Sbjct: 524 VAWTTIIAANVQSGN 538



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 105/413 (25%), Positives = 194/413 (46%), Gaps = 22/413 (5%)

Query: 164 ETGDQRC---GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS 220
           + G+QR    G  +HA I       + L+G  +  MY           +F+A+  +    
Sbjct: 59  QCGNQRALDHGRRVHAHIVSRRLARNALLGELVFQMYARCRCFDTAIALFDAMPDRRPFC 118

Query: 221 WNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTI 280
           WN L   F   + P   L ++ +M ++  +P+ C F+  + AC  + D+  G+ +H + +
Sbjct: 119 WNVLMKEFLAADRPRDTLELYRRMSVENTQPSACGFMWAIVACGRIKDLAQGRSIH-YRV 177

Query: 281 KHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALK 340
                 N  + ++LV MY + G ++ A  AFD         + AI+++ A AG    A++
Sbjct: 178 ATGRGINSSIQSALVTMYAQCGRIDLAMAAFDDNRELGTAPWNAIMSALAGAGHHRRAIE 237

Query: 341 CFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYA 400
            F +M  E  + ++ + A  L  C+    L  G  +H       H   + V  AL++MY 
Sbjct: 238 LFFQM--EQHQCSDRSCAIALGACAAAGHLRGGIQIHDKIQSEIHGTRVLVLNALISMYV 295

Query: 401 KCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVV 460
           +CG +D+A  VF     R+  SW  MI    + G    A++ F  M+ EG  P+E T+  
Sbjct: 296 RCGKLDEALRVFADMPHRNVVSWTSMIAAVAQSGHYSFAVKLFDGMIAEGINPNEKTYAS 355

Query: 461 VLSACSHMG---LIEEGKKHFSSIKKIYGI--TPTIKHFACMIDILGRAGKFTEI-ENFI 514
           V+SA +H+G   +++ G+K  S I    GI   P +++   +I++  R+G   E  E F 
Sbjct: 356 VVSAIAHLGRDAILDRGRKIHSQITA-SGIDADPIVQN--SLINMYARSGLLAEAREVFD 412

Query: 515 TETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           +  + +   + +  ++ A + +G+         + LE+  +M +  V P++I+
Sbjct: 413 SILENSKTVVSFTTMIAAYAHNGH-------PRQALEIFREMTARGVAPNEIT 458


>gi|359486457|ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
           [Vitis vinifera]
          Length = 836

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 182/585 (31%), Positives = 309/585 (52%)

Query: 15  NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVH 74
           N+V+WN ++ G+ E+G  +K + L+   K+   K    S +      ++   +  G+ VH
Sbjct: 208 NIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVH 267

Query: 75  AMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQ 134
              I++    D ++  SL+ MY+K G  ++A KVF ++ D +V    A+I+     G   
Sbjct: 268 CDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAY 327

Query: 135 EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALV 194
           +A  ++N M+      + F ++SL+   +  G    G ++HA + K   +S+  + +AL+
Sbjct: 328 DALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALL 387

Query: 195 SMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMC 254
           +MY + G       VF  +  +D V+W ++ + F         L +F  M  +G K +  
Sbjct: 388 TMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSD 447

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
               ++ A   L +V  G  +H   IK  L+ +  V  SLVDMY K G  E A + F S+
Sbjct: 448 VMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSM 507

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
            NK+L A+ ++I+ Y+  G  EM++    ++   G   +  ++ + L   S VA L  G+
Sbjct: 508 PNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGK 567

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
            LH+  ++     D+ V  AL+ MY KCG +  A+ +F+    R+  +WN MI GY  HG
Sbjct: 568 TLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHG 627

Query: 435 LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHF 494
             E+A+  F+ M      PDE+TF+ ++++CSH G++EEG   F  ++  YG+ P ++H+
Sbjct: 628 NCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHY 687

Query: 495 ACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEP 554
           A ++D+LGRAG+  +  +FI    +  +  VW  LL AC  H N+EL E  A+ LL++EP
Sbjct: 688 ASVVDLLGRAGRLDDAYSFIRGMPIDADRSVWLCLLFACRAHRNMELGELVADNLLKMEP 747

Query: 555 KMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
              SNYV   ++      W+  + +RA +  +G+KK P CSWIEV
Sbjct: 748 ARGSNYVPLLNLYGEVEMWDRAANLRASMKGRGLKKSPGCSWIEV 792



 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 150/558 (26%), Positives = 261/558 (46%), Gaps = 30/558 (5%)

Query: 2   ELAKRVFKSMPELNV-VSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +   R F S+ +  V  S N+ +    + G   + + L           +KF+  ++LK 
Sbjct: 5   QFISRKFYSLRQTEVSPSINSKIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKT 64

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD-----P 115
            A+   +  G+ +HA  + +G   D +++ SL++MY KCGL  +AL+VF ++ +     P
Sbjct: 65  CASLSNLYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAP 124

Query: 116 DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH 175
           D+  W  +I    + G  +E    F  M+E S                       G  IH
Sbjct: 125 DITVWNPVIDGYFKYGHFEEGLAQFCRMQELSW-------------------YMAGRQIH 165

Query: 176 AVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDS-VSWNALFSRFQDYESP 234
             I +  FE D  +  AL+ MY    R      +F  + ++ + V+WN +   F +    
Sbjct: 166 GYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMW 225

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
           ++ L ++     +  K    +F     ACS    + FG+Q+H   IK +   +  V TSL
Sbjct: 226 EKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSL 285

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           + MY KSG +EDA   FD + +K++    A+I+++   G A  AL  + KM+      + 
Sbjct: 286 LTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDS 345

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
           FT++S L+GCS V +   GR +H+  +K     ++ + +AL+ MY KCGS +DA++VF  
Sbjct: 346 FTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYT 405

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
              RD  +W  MI G+ ++   + AL+ FR M  EG   D      V+SA   +  +E G
Sbjct: 406 MKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELG 465

Query: 475 KK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
              H  +IK+  G+   +     ++D+  + G F E    +  +    N + W +++   
Sbjct: 466 HLIHGFAIKR--GLESDVFVACSLVDMYSKFG-FAESAEMVFSSMPNKNLVAWNSMISCY 522

Query: 534 SWHGNIELDEKDAEKLLE 551
           SW+G  E+      ++L+
Sbjct: 523 SWNGLPEMSINLLPQILQ 540



 Score =  197 bits (502), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 121/425 (28%), Positives = 216/425 (50%), Gaps = 2/425 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E AK+VF  + +  V   NA+++ +  +G     + L+  MK  E     F++S++L G
Sbjct: 295 VEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSG 354

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +  G    G+ VHA  I+     +  +  +L+ MY KCG  ++A  VFY +K+ DVVAW
Sbjct: 355 CSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAW 414

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
           G++I    Q    ++A  +F  M +  VK +  V+TS++ A     +   G  IH    K
Sbjct: 415 GSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIK 474

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G ESD  V  +LV MY + G       VF ++ +++ V+WN++ S +     P+  + +
Sbjct: 475 RGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCYSWNGLPEMSINL 534

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
             Q+L  GF  +  +   +L A SS++ +  GK LHA+ I+  +  +  V  +L+DMY K
Sbjct: 535 LPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVK 594

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            GCL+ A + F+++  ++L  + ++I  Y   G  E A++ F++M+      +E T  + 
Sbjct: 595 CGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLAL 654

Query: 361 LNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL-R 418
           +  CS    +  G  L   + ++ G    M    ++V +  + G +DDA +  +G  +  
Sbjct: 655 ITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDA 714

Query: 419 DTASW 423
           D + W
Sbjct: 715 DRSVW 719


>gi|147790104|emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
          Length = 825

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 196/608 (32%), Positives = 316/608 (51%), Gaps = 9/608 (1%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           +L +RVF +M + NVV+WN +++ Y ++    +   +F +M  M  + +  S   V    
Sbjct: 169 DLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAV 228

Query: 62  ANSGYIKAGQVVHAMAIRLGCAL--DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
                     V++ + ++LG     D F+  S + MY++ G  D A ++F    + +   
Sbjct: 229 WRMNDYDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEV 288

Query: 120 WGAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           W  +I    Q  C  EA  +F  +M       +     S + A ++      G  +HA I
Sbjct: 289 WNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYI 348

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K       ++ NA++ MY   G +    +VF  +  +D V+WN + S F      D+GL
Sbjct: 349 LKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGL 408

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            + ++M  +GF  +  T   +L   S+L     GKQ HA+ I+H +    + G  L+DMY
Sbjct: 409 MLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGMDGY-LIDMY 467

Query: 299 DKSGCLEDAGVAFD--SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
            KSG +  A   F+  S  ++D   + A+I  Y Q G +E     FRKM  + ++ N  T
Sbjct: 468 AKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVT 527

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
           LAS L  C+P+ T+  G+ +H  A++     ++FV TAL+ MY+K G+I  AE VF  + 
Sbjct: 528 LASILPACNPMGTIGLGKQIHGFAIRCFLNQNVFVGTALLDMYSKSGAITYAENVFAETL 587

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            +++ ++  MI  Y +HG+GE+AL  F  ML  G  PD +TFV +LSACS+ GL++EG +
Sbjct: 588 EKNSVTYTTMILSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLR 647

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNAL-VWENLLGACSW 535
            F S+++ Y I P+ +H+ C+ D+LGR G+  E   F+       N   +W +LLGAC  
Sbjct: 648 IFQSMEREYKIQPSSEHYCCVADMLGRVGRVXEAYEFVKGLGEEGNTFRIWGSLLGACRI 707

Query: 536 HGNIELDEKDAEKLLELE--PKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPS 593
           HG  EL +  A KLLE+E    +   +V  S+I A +G W++   VR  +  +G+ KE  
Sbjct: 708 HGEFELGKVVANKLLEMEKGSXLTGYHVLLSNIYAAEGNWDNVDRVRKEMRQKGLMKEAG 767

Query: 594 CSWIEVDG 601
           CSW+EV G
Sbjct: 768 CSWVEVAG 775



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 137/554 (24%), Positives = 263/554 (47%), Gaps = 24/554 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMK-DMEKKFSKFSLSTVLKGFA 62
           A  +F S+P    V WN ++ G+  +      +  +  M+     KF  ++ S+ LK  A
Sbjct: 56  ALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKACA 115

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKC-------GLA------DNALKVF 109
            +  +K G+ +H   +R      + +  SL++MYS C       G A      D   +VF
Sbjct: 116 QARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVF 175

Query: 110 YRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
             ++  +VVAW  +I+   +     EA K+F  M    ++P      ++  A     D  
Sbjct: 176 DTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMNDYD 235

Query: 170 CGESIHAVICKYG--FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR 227
               ++ ++ K G  +  D  V ++ + MY E G V +   +F+    +++  WN +   
Sbjct: 236 NANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGG 295

Query: 228 FQDYESPDQGLRIFYQML-LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDG 286
           +     P + + +F Q++  + F  +  TF+  L A S L  +  G+QLHA+ +K S   
Sbjct: 296 YVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYILKSSTIL 355

Query: 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR 346
             V+  +++ MY + G +  +   F ++  +D+  +  +++++ Q G  +  L    +M+
Sbjct: 356 QVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQ 415

Query: 347 LEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSID 406
            +G   +  TL + L+  S + +   G+  H+  ++ G   +  +   L+ MYAK G I 
Sbjct: 416 KQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEG-MDGYLIDMYAKSGLIT 474

Query: 407 DAEAVFKGSAL--RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
            A+ +F+ ++   RD A+WN MI GY ++GL E+    FR M+++   P+ +T   +L A
Sbjct: 475 TAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPA 534

Query: 465 CSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNA 523
           C+ MG I  GK+ H  +I+    +   +     ++D+  ++G  T  EN   ET L  N+
Sbjct: 535 CNPMGTIGLGKQIHGFAIRCF--LNQNVFVGTALLDMYSKSGAITYAENVFAET-LEKNS 591

Query: 524 LVWENLLGACSWHG 537
           + +  ++ +   HG
Sbjct: 592 VTYTTMILSYGQHG 605



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 188/383 (49%), Gaps = 5/383 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLK 59
           ++ A+ +F    E N   WN ++ GY ++    + + LF  + + E+      +  + L 
Sbjct: 271 VDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALT 330

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             +   ++  G+ +HA  ++    L   +  +++ MYS+CG    + KVF  + + DVV 
Sbjct: 331 AISQLQWLDLGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVT 390

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  +++   Q G   E   +   M++     +   LT+L+   +    Q  G+  HA + 
Sbjct: 391 WNTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLI 450

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFE--AIAHQDSVSWNALFSRFQDYESPDQG 237
           ++G + + + G  L+ MY ++G ++   ++FE  +   +D  +WNA+ + +      ++G
Sbjct: 451 RHGIQFEGMDG-YLIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEG 509

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
             +F +M+ +  +PN  T   IL AC+ +  +G GKQ+H   I+  L+ N  VGT+L+DM
Sbjct: 510 FAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNQNVFVGTALLDM 569

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y KSG +  A   F     K+   YT +I SY Q G  E AL  F  M   GIK +  T 
Sbjct: 570 YSKSGAITYAENVFAETLEKNSVTYTTMILSYGQHGMGERALSLFHAMLGSGIKPDSVTF 629

Query: 358 ASCLNGCSPVATLANG-RLLHSI 379
            + L+ CS    +  G R+  S+
Sbjct: 630 VAILSACSYAGLVDEGLRIFQSM 652



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 169/368 (45%), Gaps = 30/368 (8%)

Query: 209 VFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM--CTFIVILKACSSL 266
           +F++I    +V WN +   F     P   L +FY  +     P     TF   LKAC+  
Sbjct: 59  LFDSIPRPTTVLWNTIIIGFICNNMPIDAL-LFYARMRASPSPKFDSYTFSSTLKACAQA 117

Query: 267 SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA---GVA------------F 311
             +  GK LH H ++     + +V  SL++MY  S CL +    G A            F
Sbjct: 118 RSLKLGKALHCHVLRSHFGSSRIVYNSLLNMY--STCLTEVPYLGTAYDFNNCDLVRRVF 175

Query: 312 DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLA 371
           D++  +++ A+  +I+ Y +      A K FR M   GI+    +  +       +    
Sbjct: 176 DTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMNDYD 235

Query: 372 NGRLLHSIAVKTG--HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           N  +L+ + VK G  ++ D FV ++ + MYA+ G +D A  +F     R+T  WN MIGG
Sbjct: 236 NANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGG 295

Query: 430 YVKHGLGEKALEAF-RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGIT 488
           YV++    +A++ F ++M  E +  D++TF+  L+A S +  ++ G++  + I K   I 
Sbjct: 296 YVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYILKSSTIL 355

Query: 489 PTIKHFACMIDILGRAGKF-TEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAE 547
             +     +I +  R G   T  + F     L  + + W  ++ A   +G   LD++   
Sbjct: 356 QVVI-LNAIIVMYSRCGSIGTSFKVF--SNMLERDVVTWNTMVSAFVQNG---LDDEGLM 409

Query: 548 KLLELEPK 555
            + E++ +
Sbjct: 410 LVFEMQKQ 417


>gi|357168001|ref|XP_003581434.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Brachypodium distachyon]
          Length = 757

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 186/602 (30%), Positives = 316/602 (52%), Gaps = 2/602 (0%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E A+ VF  MP  N VSW +++  +A++      + LF SM        +F+L + ++  
Sbjct: 93  ESARLVFDEMPAKNPVSWASVIAAHAQNRRSTDALGLFSSMLRSGTAPDQFALGSTVRAC 152

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           A  G I  G+ VHA A++     D  +  +LV MYSK GL  +   +F R+++ D ++WG
Sbjct: 153 AELGDIGVGRQVHAQAMKSENGSDLIVQNALVTMYSKSGLVADGFLLFGRMREKDPISWG 212

Query: 122 AIITCLDQQGCCQEAAKIFN-LMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
           +II    QQGC  EA +IF  ++ E    PN+F   S+  A    G    GE IH++  K
Sbjct: 213 SIIAGFAQQGCEMEALQIFREMVAEGMHHPNEFHFGSVFSACGVLGSLEYGEQIHSLSVK 272

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           Y  + ++  G +L  MY    ++    RVF  I   D VSWN++ +         + + +
Sbjct: 273 YRLDHNSYAGCSLSDMYARCKKLESAKRVFYGIDAPDLVSWNSIINACSVEGLLSEAMVL 332

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
             +M   G +P+  T   +L AC     +  G+ +H++ +K  LDG+  V  SL+ MY +
Sbjct: 333 LSEMRGSGLRPDGITVRGLLCACVGCDAIQHGRLMHSYLVKLGLDGDVSVCNSLLSMYAR 392

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
                 A   F    ++D+  + +I+T+  Q    E+  K F  ++      +  +L + 
Sbjct: 393 CMDFSSAMDVFHETRDRDVVTWNSILTACVQHQHLEVVFKLFNLLQRSLPSLDRISLNNV 452

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-D 419
           L+  + +      + +H+   K G + D  +S  L+  YAKCGS+DDA  +F+      D
Sbjct: 453 LSASAELGYFEMVKQVHTCTFKVGLVNDTMLSNGLIDTYAKCGSLDDAVKLFEMMGTNSD 512

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SW+ +I GY + G   KAL+ F  M + G  P+ +TFV VL+ACS +GL++EG  ++S
Sbjct: 513 VFSWSSLIVGYAQSGYPRKALDLFARMRNLGVRPNHVTFVGVLTACSRVGLVDEGCYYYS 572

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
            ++  +G+ PT +H +C+ID+L RAG+ TE   F+ +    P+ ++W+ LL     H ++
Sbjct: 573 IMEPEHGVLPTREHCSCVIDLLARAGRLTEAAKFVDQMPFEPDIVMWKTLLAGSKTHNDV 632

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           E+  + AE +L ++P   + YV   +I +  G WN+F+ ++  + S G+KK P  SW+++
Sbjct: 633 EMGRRAAEGILNIDPSHSAAYVLLCNIYSASGDWNEFARLKKAMRSSGVKKSPGKSWVKL 692

Query: 600 DG 601
            G
Sbjct: 693 KG 694



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 143/508 (28%), Positives = 236/508 (46%), Gaps = 17/508 (3%)

Query: 85  DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMR 144
           +  L+  L+ MY +C   ++A  VF  +   + V+W ++I    Q     +A  +F+ M 
Sbjct: 75  NTVLNNHLITMYGRCAAPESARLVFDEMPAKNPVSWASVIAAHAQNRRSTDALGLFSSML 134

Query: 145 ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVS 204
            S   P+QF L S VRA  E GD   G  +HA   K    SD +V NALV+MY ++G V+
Sbjct: 135 RSGTAPDQFALGSTVRACAELGDIGVGRQVHAQAMKSENGSDLIVQNALVTMYSKSGLVA 194

Query: 205 YGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF-KPNMCTFIVILKAC 263
            G  +F  +  +D +SW ++ + F       + L+IF +M+ +G   PN   F  +  AC
Sbjct: 195 DGFLLFGRMREKDPISWGSIIAGFAQQGCEMEALQIFREMVAEGMHHPNEFHFGSVFSAC 254

Query: 264 SSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYT 323
             L  + +G+Q+H+ ++K+ LD N   G SL DMY +   LE A   F  +   DL ++ 
Sbjct: 255 GVLGSLEYGEQIHSLSVKYRLDHNSYAGCSLSDMYARCKKLESAKRVFYGIDAPDLVSWN 314

Query: 324 AIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKT 383
           +II + +  G    A+    +MR  G++ +  T+   L  C     + +GRL+HS  VK 
Sbjct: 315 SIINACSVEGLLSEAMVLLSEMRGSGLRPDGITVRGLLCACVGCDAIQHGRLMHSYLVKL 374

Query: 384 GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF 443
           G   D+ V  +L++MYA+C     A  VF  +  RD  +WN ++   V+H   E   + F
Sbjct: 375 GLDGDVSVCNSLLSMYARCMDFSSAMDVFHETRDRDVVTWNSILTACVQHQHLEVVFKLF 434

Query: 444 RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGR 503
            ++       D I+   VLSA + +G  E  K+  +   K+  +  T+     +ID   +
Sbjct: 435 NLLQRSLPSLDRISLNNVLSASAELGYFEMVKQVHTCTFKVGLVNDTMLSNG-LIDTYAK 493

Query: 504 AGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFP 563
            G   +            +   W +L+   +  G          K L+L  +M +  V P
Sbjct: 494 CGSLDDAVKLFEMMGTNSDVFSWSSLIVGYAQSGY-------PRKALDLFARMRNLGVRP 546

Query: 564 SDISATQGRWNDFSGVRALLSSQGIKKE 591
           + ++        F GV    S  G+  E
Sbjct: 547 NHVT--------FVGVLTACSRVGLVDE 566



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 167/343 (48%), Gaps = 3/343 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E AKRVF  +   ++VSWN+++N  +  G   + M L   M+    +    ++  +L  
Sbjct: 295 LESAKRVFYGIDAPDLVSWNSIINACSVEGLLSEAMVLLSEMRGSGLRPDGITVRGLLCA 354

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 I+ G+++H+  ++LG   D  +  SL+ MY++C    +A+ VF+  +D DVV W
Sbjct: 355 CVGCDAIQHGRLMHSYLVKLGLDGDVSVCNSLLSMYARCMDFSSAMDVFHETRDRDVVTW 414

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +I+T   Q    +   K+FNL++ S    ++  L +++ A+ E G     + +H    K
Sbjct: 415 NSILTACVQHQHLEVVFKLFNLLQRSLPSLDRISLNNVLSASAELGYFEMVKQVHTCTFK 474

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALFSRFQDYESPDQGLR 239
            G  +DT++ N L+  Y + G +    ++FE +  + D  SW++L   +     P + L 
Sbjct: 475 VGLVNDTMLSNGLIDTYAKCGSLDDAVKLFEMMGTNSDVFSWSSLIVGYAQSGYPRKALD 534

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHA-HTIKHSLDGNHVVGTSLVDMY 298
           +F +M   G +PN  TF+ +L ACS +  V  G   ++    +H +       + ++D+ 
Sbjct: 535 LFARMRNLGVRPNHVTFVGVLTACSRVGLVDEGCYYYSIMEPEHGVLPTREHCSCVIDLL 594

Query: 299 DKSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALK 340
            ++G L +A    D +    D+  +  ++       + EM  +
Sbjct: 595 ARAGRLTEAAKFVDQMPFEPDIVMWKTLLAGSKTHNDVEMGRR 637



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 136/280 (48%), Gaps = 8/280 (2%)

Query: 263 CSSLSDVGFGKQLHAHTIKH---SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL 319
           CS L  +  G  +H H +     +L  N V+   L+ MY +    E A + FD +  K+ 
Sbjct: 48  CSRLRALCLGCLVHRHLLASPDPNLVRNTVLNNHLITMYGRCAAPESARLVFDEMPAKNP 107

Query: 320 FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSI 379
            ++ ++I ++AQ   +  AL  F  M   G   ++F L S +  C+ +  +  GR +H+ 
Sbjct: 108 VSWASVIAAHAQNRRSTDALGLFSSMLRSGTAPDQFALGSTVRACAELGDIGVGRQVHAQ 167

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
           A+K+ +  D+ V  ALV MY+K G + D   +F     +D  SW  +I G+ + G   +A
Sbjct: 168 AMKSENGSDLIVQNALVTMYSKSGLVADGFLLFGRMREKDPISWGSIIAGFAQQGCEMEA 227

Query: 440 LEAFRMMLDEG-YVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACM 497
           L+ FR M+ EG + P+E  F  V SAC  +G +E G++ H  S+K  Y +         +
Sbjct: 228 LQIFREMVAEGMHHPNEFHFGSVFSACGVLGSLEYGEQIHSLSVK--YRLDHNSYAGCSL 285

Query: 498 IDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
            D+  R  K    +         P+ + W +++ ACS  G
Sbjct: 286 SDMYARCKKLESAKRVFYGID-APDLVSWNSIINACSVEG 324


>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
 gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 903

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 191/615 (31%), Positives = 328/615 (53%), Gaps = 22/615 (3%)

Query: 6   RVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSG 65
           RVF+ +PE N VSW+A++ G  ++      +  F  M+ +    S+   ++VL+  A   
Sbjct: 236 RVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALS 295

Query: 66  YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT 125
            ++ G  +HA A++   A D  +  + +DMY+KC    +A  +F   ++ +  ++ A+IT
Sbjct: 296 ELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMIT 355

Query: 126 CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
              Q+    +A  +F+ +  S +  ++  L+ + RA         G  I+ +  K     
Sbjct: 356 GYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSL 415

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           D  V NA + MY +   ++   RVF+ +  +D+VSWNA+ +  +      + L +F  ML
Sbjct: 416 DVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSML 475

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
               +P+  TF  ILKAC+  S +G+G ++H+  +K  +  N  VG SL+DMY K G +E
Sbjct: 476 RSRIEPDEFTFGSILKACTGGS-LGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIE 534

Query: 306 DAGV----------------AFDSLANKDL----FAYTAIITSYAQAGEAEMALKCFRKM 345
           +A                    + + NK L     ++ +II+ Y    ++E A   F +M
Sbjct: 535 EAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRM 594

Query: 346 RLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSI 405
              GI  ++FT A+ L+ C+ +A+   G+ +H+  +K     D+++ + LV MY+KCG +
Sbjct: 595 MEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDL 654

Query: 406 DDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC 465
            D+  +F+ S  RD  +WN MI GY  HG GE+A++ F  M+ E   P+ +TF+ +L AC
Sbjct: 655 HDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRAC 714

Query: 466 SHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV 525
           +HMGLI++G ++F  +K+ YG+ P + H++ M+DILG++GK       I E     + ++
Sbjct: 715 AHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVI 774

Query: 526 WENLLGACSWH-GNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLS 584
           W  LLG C+ H  N+E+ E+    LL L+P+  S Y   S++ A  G W   S +R  + 
Sbjct: 775 WRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMR 834

Query: 585 SQGIKKEPSCSWIEV 599
              +KKEP CSW+E+
Sbjct: 835 GFKLKKEPGCSWVEL 849



 Score =  218 bits (555), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 153/585 (26%), Positives = 276/585 (47%), Gaps = 32/585 (5%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A   F  MP  +VVSWN++L+GY ++G+  K + +F  M     +F   + + +LK  + 
Sbjct: 133 ANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSF 192

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G  +H + +R+GC  D   + +L+DMY+K      +L+VF  I + + V+W AI
Sbjct: 193 LEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAI 252

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q      A K F  M++ +   +Q +  S++R+     + R G  +HA   K  F
Sbjct: 253 IAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDF 312

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            +D +V  A + MY +   +     +F+   + +  S+NA+ + +   E   + L +F++
Sbjct: 313 AADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHR 372

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           ++  G   +  +   + +AC+ +  +  G Q++   IK SL  +  V  + +DMY K   
Sbjct: 373 LMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQA 432

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L +A   FD +  +D  ++ AII ++ Q G+    L  F  M    I+ +EFT  S L  
Sbjct: 433 LAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKA 492

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV----FKGSALRD 419
           C+   +L  G  +HS  VK+G   +  V  +L+ MY+KCG I++AE +    F+ + +  
Sbjct: 493 CTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSG 551

Query: 420 T----------------ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           T                 SWN +I GYV     E A   F  M++ G  PD+ T+  VL 
Sbjct: 552 TMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLD 611

Query: 464 ACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPN 522
            C+++     GK+ H   IKK   +   +   + ++D+  + G   +    + E  L  +
Sbjct: 612 TCANLASAGLGKQIHAQVIKK--ELQSDVYICSTLVDMYSKCGDLHD-SRLMFEKSLRRD 668

Query: 523 ALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            + W  ++   + HG         E+ ++L  +M    + P+ ++
Sbjct: 669 FVTWNAMICGYAHHGK-------GEEAIQLFERMILENIKPNHVT 706



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 131/451 (29%), Positives = 219/451 (48%), Gaps = 25/451 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A+ +F +   LN  S+NA++ GY++   G K + LF  +      F + SLS V + 
Sbjct: 332 MQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRA 391

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    +  G  ++ +AI+   +LD  ++ + +DMY KC     A +VF  ++  D V+W
Sbjct: 392 CALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSW 451

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            AII   +Q G   E   +F  M  S ++P++F   S+++A T  G    G  IH+ I K
Sbjct: 452 NAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACT-GGSLGYGMEIHSSIVK 510

Query: 181 YGFESDTLVGNALVSMYMENGRVSYG----SRVFEAI----------------AHQDSVS 220
            G  S++ VG +L+ MY + G +       SR F+                    +  VS
Sbjct: 511 SGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVS 570

Query: 221 WNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTI 280
           WN++ S +   E  +    +F +M+  G  P+  T+  +L  C++L+  G GKQ+HA  I
Sbjct: 571 WNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVI 630

Query: 281 KHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALK 340
           K  L  +  + ++LVDMY K G L D+ + F+    +D   + A+I  YA  G+ E A++
Sbjct: 631 KKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQ 690

Query: 341 CFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS--TALVAM 398
            F +M LE IK N  T  S L  C+ +  +  G L +   +K  + LD  +   + +V +
Sbjct: 691 LFERMILENIKPNHVTFISILRACAHMGLIDKG-LEYFYMMKRDYGLDPQLPHYSNMVDI 749

Query: 399 YAKCGSIDDAEAVFKGSALR-DTASWNMMIG 428
             K G +  A  + +      D   W  ++G
Sbjct: 750 LGKSGKVKRALELIREMPFEADDVIWRTLLG 780



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 129/463 (27%), Positives = 230/463 (49%), Gaps = 8/463 (1%)

Query: 50  SKFSLSTVLKGFANS-GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKV 108
           + F L+ +L+ + NS  ++ A  V   M +R   + +K     +++ YSK      A   
Sbjct: 82  TTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNK-----MINGYSKSNDMFKANSF 136

Query: 109 FYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ 168
           F  +   DVV+W ++++   Q G   ++ ++F  M    ++ +      +++  +   D 
Sbjct: 137 FNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDT 196

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228
             G  IH ++ + G ++D +  +AL+ MY +  R     RVF+ I  ++SVSW+A+ +  
Sbjct: 197 SLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGC 256

Query: 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH 288
                    L+ F +M       +   +  +L++C++LS++  G QLHAH +K     + 
Sbjct: 257 VQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADG 316

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
           +V T+ +DMY K   ++DA + FD+  N +  +Y A+IT Y+Q      AL  F ++   
Sbjct: 317 IVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSS 376

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
           G+  +E +L+     C+ V  L+ G  ++ +A+K+   LD+ V+ A + MY KC ++ +A
Sbjct: 377 GLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEA 436

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
             VF     RD  SWN +I  + ++G G + L  F  ML     PDE TF  +L AC+  
Sbjct: 437 FRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG- 495

Query: 469 GLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIE 511
           G +  G +  SSI K  G+         +ID+  + G   E E
Sbjct: 496 GSLGYGMEIHSSIVK-SGMASNSSVGCSLIDMYSKCGMIEEAE 537



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 118/270 (43%), Gaps = 32/270 (11%)

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
            F  + K C+    +  GKQ HAH I         V   L+ +Y  S     A + FD +
Sbjct: 50  NFSFVFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKM 109

Query: 315 -----------------------AN--------KDLFAYTAIITSYAQAGEAEMALKCFR 343
                                  AN        +D+ ++ ++++ Y Q GE+  +++ F 
Sbjct: 110 PLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFV 169

Query: 344 KMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403
            M  EGI+ +  T A  L  CS +   + G  +H I V+ G   D+  ++AL+ MYAK  
Sbjct: 170 DMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGK 229

Query: 404 SIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
              ++  VF+G   +++ SW+ +I G V++ L   AL+ F+ M        +  +  VL 
Sbjct: 230 RFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLR 289

Query: 464 ACSHMGLIEEGKK-HFSSIKKIYGITPTIK 492
           +C+ +  +  G + H  ++K  +     ++
Sbjct: 290 SCAALSELRLGGQLHAHALKSDFAADGIVR 319


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 181/533 (33%), Positives = 294/533 (55%), Gaps = 2/533 (0%)

Query: 71  QVVHAMAIRLGCALDKFLSCSLVDMYSKC--GLADNALKVFYRIKDPDVVAWGAIITCLD 128
           Q VHA  ++    LD  ++ ++++  +       D AL +F  I  P+  A+  +I  L 
Sbjct: 38  QQVHAHLLKTRRLLDPIITEAVLESAALLLPDTIDYALSIFNHIDKPESSAYNVMIRGLA 97

Query: 129 QQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTL 188
            +     A  +F  M E SV+ ++F  +S+++A +     R GE +HA+I K GF+S+  
Sbjct: 98  FKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEF 157

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG 248
           V N L+ MY   G++     VF+ +  +  V+WN++ S +      D+ +++F ++L   
Sbjct: 158 VENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELR 217

Query: 249 FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
            + +  T I +L AC  L+++  G+ +  + +   L  N+ + TSL+DMY K G ++ A 
Sbjct: 218 IEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTAR 277

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
             FD +  +D+ A++A+I+ YAQA   + AL  F +M+   +  NE T+ S L  C+ + 
Sbjct: 278 KLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLG 337

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
               G+ +H    K    L + + T L+  YAKCG ID +  VFK  + ++  +W  +I 
Sbjct: 338 AYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQ 397

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGIT 488
           G   +G G+ ALE F  ML+    P+++TF+ VLSACSH  L+++G+  F+S+++ + I 
Sbjct: 398 GLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIE 457

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEK 548
           P I+H+ CM+DILGRAG   E   FI      PNA+VW  LL +C  H NIE+ EK  E 
Sbjct: 458 PRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEH 517

Query: 549 LLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           +  LEP    +Y+  S+  A  GR  D   VR+L+  + IKK P CS IE+DG
Sbjct: 518 ITRLEPAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELDG 570



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 185/376 (49%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  +F  + +    ++N ++ G A        + LF  M +   +  KF+ S+VLK 
Sbjct: 71  IDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKA 130

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    ++ G+ VHA+ ++ G   ++F+  +L+ MY+ CG    A  VF  + +  +VAW
Sbjct: 131 CSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAW 190

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++++   + G   E  K+F  + E  ++ +   + S++ A     +   GE I   I  
Sbjct: 191 NSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVS 250

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G   +  +  +L+ MY + G+V    ++F+ +  +D V+W+A+ S +   +   + L +
Sbjct: 251 KGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNL 310

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F++M      PN  T + +L +C+ L     GK +H +  K  +     +GT L+D Y K
Sbjct: 311 FHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAK 370

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G ++ +   F  ++ K++F +TA+I   A  GE +MAL+ F  M    +K N+ T    
Sbjct: 371 CGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGV 430

Query: 361 LNGCSPVATLANGRLL 376
           L+ CS    +  GR L
Sbjct: 431 LSACSHACLVDQGRHL 446


>gi|78499697|gb|ABB45851.1| hypothetical protein [Eutrema halophilum]
          Length = 697

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 189/600 (31%), Positives = 314/600 (52%), Gaps = 3/600 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMK--DMEKKFSKFSLSTVL 58
           + +A++VF  MP  ++ SW A++ GY  +   ++ + LF +M+   +      + LS  L
Sbjct: 44  LRVARQVFDKMPRRDIKSWTAIMKGYVAATKPEEALILFSAMRVDPLGVSGDTYVLSVAL 103

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
           K    S  I  G+ +HA A +       F+  +L+DMY + G  D + +VF  +   + V
Sbjct: 104 KACGQSSNIAYGESLHAYAEKTFLLSSVFVGSALLDMYMRIGKIDKSCRVFAEMPFRNSV 163

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLM-RESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
            W A IT L   G   E  + F+ M R   +  + F     ++A  +    + G  IH  
Sbjct: 164 TWTAFITGLVHAGLHYEGLRYFSQMSRFKQLSSDTFAFAIALKACADLRQVKYGREIHTH 223

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
           +   GF +   V N+L +MY E G +  G R+FE+++ +D V W +L + +      ++ 
Sbjct: 224 VIVKGFAAILWVANSLATMYTECGEMQDGLRLFESMSERDVVLWTSLITAYIRIGQEEKA 283

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           +  F  M      PN  TF     AC+SLS + +G+QLH +     L  +  V  S++ M
Sbjct: 284 VNTFLLMRNSQVSPNEQTFASTFAACASLSRLVWGEQLHGNVFSLGLGDSLSVSNSMMKM 343

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y     L+ A V F  +  +D+ +++ II  Y+QA   E   K F  MR  G +  +F L
Sbjct: 344 YSTCAKLDSASVLFQGMRCRDIISWSTIIGGYSQAAFGEECFKYFSWMRQAGPQPTDFAL 403

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           AS L+    +A L  GR +H++A+  G   +  + +AL+ MY+KCGSI +A  VF+    
Sbjct: 404 ASLLSVSGIMAVLEQGRQVHALALYLGLEQNPTIRSALINMYSKCGSIIEASKVFEEKDR 463

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
            D  S   MI GY +HG  E+A++ F   L   + PD++TF+ VL+ACSH G ++ G ++
Sbjct: 464 TDIVSLTAMINGYAEHGKCEEAIDLFEKSLKLSFRPDDVTFISVLTACSHSGQLDLGFQY 523

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F+ +++ Y + P  +H+ CM+D+L RAG+  + E  I E     + +VW  LL AC   G
Sbjct: 524 FNLMQENYNMRPAKEHYGCMVDLLCRAGRLNDAEKMINEMPWKKDDVVWTTLLRACKEKG 583

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           ++E   + A+++LEL+P   +  V  ++I ++ G W + + VR  + S+G+ KEP  S I
Sbjct: 584 DVERGRRAAQRILELDPTSFTTLVTLANIHSSTGNWKEAANVRKDMKSKGVIKEPGWSSI 643



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 145/282 (51%), Gaps = 3/282 (1%)

Query: 198 MENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFI 257
           +++G++    +VF+ +  +D  SW A+   +     P++ L +F  M +     +  T++
Sbjct: 39  IDSGKLRVARQVFDKMPRRDIKSWTAIMKGYVAATKPEEALILFSAMRVDPLGVSGDTYV 98

Query: 258 --VILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
             V LKAC   S++ +G+ LHA+  K  L  +  VG++L+DMY + G ++ +   F  + 
Sbjct: 99  LSVALKACGQSSNIAYGESLHAYAEKTFLLSSVFVGSALLDMYMRIGKIDKSCRVFAEMP 158

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFTLASCLNGCSPVATLANGR 374
            ++   +TA IT    AG     L+ F +M R + + S+ F  A  L  C+ +  +  GR
Sbjct: 159 FRNSVTWTAFITGLVHAGLHYEGLRYFSQMSRFKQLSSDTFAFAIALKACADLRQVKYGR 218

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
            +H+  +  G    ++V+ +L  MY +CG + D   +F+  + RD   W  +I  Y++ G
Sbjct: 219 EIHTHVIVKGFAAILWVANSLATMYTECGEMQDGLRLFESMSERDVVLWTSLITAYIRIG 278

Query: 435 LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
             EKA+  F +M +    P+E TF    +AC+ +  +  G++
Sbjct: 279 QEEKAVNTFLLMRNSQVSPNEQTFASTFAACASLSRLVWGEQ 320



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 103/202 (50%), Gaps = 5/202 (2%)

Query: 279 TIKHSLDGNHV-VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEM 337
           +I+ S+  NHV   + L D+ D SG L  A   FD +  +D+ ++TAI+  Y  A + E 
Sbjct: 19  SIEKSMHSNHVDTHSQLQDLID-SGKLRVARQVFDKMPRRDIKSWTAIMKGYVAATKPEE 77

Query: 338 ALKCFRKMRLE--GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTAL 395
           AL  F  MR++  G+  + + L+  L  C   + +A G  LH+ A KT  L  +FV +AL
Sbjct: 78  ALILFSAMRVDPLGVSGDTYVLSVALKACGQSSNIAYGESLHAYAEKTFLLSSVFVGSAL 137

Query: 396 VAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD-EGYVPD 454
           + MY + G ID +  VF     R++ +W   I G V  GL  + L  F  M   +    D
Sbjct: 138 LDMYMRIGKIDKSCRVFAEMPFRNSVTWTAFITGLVHAGLHYEGLRYFSQMSRFKQLSSD 197

Query: 455 EITFVVVLSACSHMGLIEEGKK 476
              F + L AC+ +  ++ G++
Sbjct: 198 TFAFAIALKACADLRQVKYGRE 219


>gi|357114751|ref|XP_003559158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 695

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 191/603 (31%), Positives = 319/603 (52%), Gaps = 16/603 (2%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           +F  MP  N+V+W + ++G   +G  +  M  F  M       + F+ +  L   A++  
Sbjct: 49  LFDRMPRKNIVAWTSAVSGLTRNGRPEAAMAAFADMVASGVAPNDFAFNAALAACADASA 108

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           ++AG+ VH++A+R G A D ++  SLV++YS+CG    A  VF R++ PDVV + ++++ 
Sbjct: 109 LRAGEQVHSLAVRAGFAGDSWVGSSLVELYSRCGDLGAAKGVFDRMESPDVVGYTSLVSA 168

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK-YGFES 185
             + G  + A    + M    V+PN+  + S++ +         GE +HA + K  G  S
Sbjct: 169 FCRSGEFELAVDTLHQMLRQGVEPNEHTMASILGSCCPF---VLGEQVHAYMIKAMGLHS 225

Query: 186 DTL-VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
            ++   +AL+  Y  N        VF  +  ++ V+W ++         P+  L++F  M
Sbjct: 226 QSMYASSALIDFYSRNSEFDMAKAVFNNLHCKNVVTWCSMMQLHIRDGRPEDALQVFDDM 285

Query: 245 LLKGF-KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           + +G  +PN   F + L AC S   +  G+QLH+  IK +L  +  V  +L+ MY +   
Sbjct: 286 ISEGVVEPNEFAFSIALGACGS---IALGRQLHSSAIKRNLTSDLRVSNALLSMYGRICH 342

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +++       + N D+ ++T  I++  Q G +E A+     +   G+  N++  +S L+ 
Sbjct: 343 VQELEAVLKDIENPDIVSWTTAISANFQNGFSEKAIALLSMLHSRGLMPNDYAFSSALSS 402

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +A L  GR  H +A+K G  L +    AL+ +Y+KCG I  A+  F     RD  SW
Sbjct: 403 CADLALLDQGRQFHCLALKLGCDLKICTGNALINLYSKCGQIAPAKLAFDVMDHRDVTSW 462

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLD-EGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI- 481
           N +I GY +HG    AL+ F  M    G  PDE +F+ VL+AC+H G++ EG   F +I 
Sbjct: 463 NSLIHGYAQHGDASMALQVFGEMRSIRGTEPDESSFLGVLAACNHAGMVNEGVALFRAIA 522

Query: 482 -KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
               +G TP+  H+AC++D++GR+G+F +    + E    P AL+W+ LL +C  HGN+E
Sbjct: 523 SHSQHGATPSPSHYACVVDMMGRSGRFDDALRLVEEMPFRPGALIWKTLLASCRLHGNLE 582

Query: 541 LDEKDAEKLLEL----EPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSW 596
             E  AE+L+EL    E +  ++YV  S I A +G W D   VR  +   G++KE  CSW
Sbjct: 583 TGELAAERLMELSEGGEDRDSASYVLMSGIHAMRGEWRDAYRVRRRMDEAGVRKEAGCSW 642

Query: 597 IEV 599
           +EV
Sbjct: 643 VEV 645



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 138/507 (27%), Positives = 237/507 (46%), Gaps = 29/507 (5%)

Query: 90  CSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK 149
           C  +D   K G   +AL +F R+   ++VAW + ++ L + G  + A   F  M  S V 
Sbjct: 31  CKRLDRLMKSGSLGDALDLFDRMPRKNIVAWTSAVSGLTRNGRPEAAMAAFADMVASGVA 90

Query: 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRV 209
           PN F   + + A  +    R GE +H++  + GF  D+ VG++LV +Y   G +     V
Sbjct: 91  PNDFAFNAALAACADASALRAGEQVHSLAVRAGFAGDSWVGSSLVELYSRCGDLGAAKGV 150

Query: 210 FEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDV 269
           F+ +   D V + +L S F      +  +   +QML +G +PN  T   IL +C      
Sbjct: 151 FDRMESPDVVGYTSLVSAFCRSGEFELAVDTLHQMLRQGVEPNEHTMASILGSCCPFV-- 208

Query: 270 GFGKQLHAHTIK----HSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
             G+Q+HA+ IK    HS   +    ++L+D Y ++   + A   F++L  K++  + ++
Sbjct: 209 -LGEQVHAYMIKAMGLHS--QSMYASSALIDFYSRNSEFDMAKAVFNNLHCKNVVTWCSM 265

Query: 326 ITSYAQAGEAEMALKCFRKMRLEG-IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           +  + + G  E AL+ F  M  EG ++ NEF  +  L  C  +A    GR LHS A+K  
Sbjct: 266 MQLHIRDGRPEDALQVFDDMISEGVVEPNEFAFSIALGACGSIAL---GRQLHSSAIKRN 322

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
              D+ VS AL++MY +   + + EAV K     D  SW   I    ++G  EKA+    
Sbjct: 323 LTSDLRVSNALLSMYGRICHVQELEAVLKDIENPDIVSWTTAISANFQNGFSEKAIALLS 382

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA 504
           M+   G +P++  F   LS+C+ + L+++G++ F  +    G    I     +I++  + 
Sbjct: 383 MLHSRGLMPNDYAFSSALSSCADLALLDQGRQ-FHCLALKLGCDLKICTGNALINLYSKC 441

Query: 505 GKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564
           G+    +    +     +   W +L+   + HG       DA   L++  +M S      
Sbjct: 442 GQIAPAK-LAFDVMDHRDVTSWNSLIHGYAQHG-------DASMALQVFGEMRS------ 487

Query: 565 DISATQGRWNDFSGVRALLSSQGIKKE 591
            I  T+   + F GV A  +  G+  E
Sbjct: 488 -IRGTEPDESSFLGVLAACNHAGMVNE 513



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 149/311 (47%), Gaps = 8/311 (2%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLKG 60
           ++AK VF ++   NVV+W +++  +   G  +  + +F  M  +   + ++F+ S  L  
Sbjct: 245 DMAKAVFNNLHCKNVVTWCSMMQLHIRDGRPEDALQVFDDMISEGVVEPNEFAFSIALGA 304

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
               G I  G+ +H+ AI+     D  +S +L+ MY +         V   I++PD+V+W
Sbjct: 305 ---CGSIALGRQLHSSAIKRNLTSDLRVSNALLSMYGRICHVQELEAVLKDIENPDIVSW 361

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
              I+   Q G  ++A  + +++    + PN +  +S + +  +      G   H +  K
Sbjct: 362 TTAISANFQNGFSEKAIALLSMLHSRGLMPNDYAFSSALSSCADLALLDQGRQFHCLALK 421

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G +     GNAL+++Y + G+++     F+ + H+D  SWN+L   +  +      L++
Sbjct: 422 LGCDLKICTGNALINLYSKCGQIAPAKLAFDVMDHRDVTSWNSLIHGYAQHGDASMALQV 481

Query: 241 FYQML-LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS---LVD 296
           F +M  ++G +P+  +F+ +L AC+    V  G  L      HS  G     +    +VD
Sbjct: 482 FGEMRSIRGTEPDESSFLGVLAACNHAGMVNEGVALFRAIASHSQHGATPSPSHYACVVD 541

Query: 297 MYDKSGCLEDA 307
           M  +SG  +DA
Sbjct: 542 MMGRSGRFDDA 552



 Score = 45.4 bits (106), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 5/127 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDME-KKFSKFSLSTVLKGFA 62
           AK  F  M   +V SWN+L++GYA+ GD    + +F  M+ +   +  + S   VL    
Sbjct: 447 AKLAFDVMDHRDVTSWNSLIHGYAQHGDASMALQVFGEMRSIRGTEPDESSFLGVLAACN 506

Query: 63  NSGYIKAGQVVH---AMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
           ++G +  G  +    A   + G          +VDM  + G  D+AL++   +   P  +
Sbjct: 507 HAGMVNEGVALFRAIASHSQHGATPSPSHYACVVDMMGRSGRFDDALRLVEEMPFRPGAL 566

Query: 119 AWGAIIT 125
            W  ++ 
Sbjct: 567 IWKTLLA 573


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 188/598 (31%), Positives = 310/598 (51%), Gaps = 4/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A  +F  MPE N VS+  L  GYA     Q  + L+  +     + +    ++ LK F +
Sbjct: 103 ALNLFDEMPERNNVSYVTLTQGYA----CQDPVGLYSRLHREGHELNPHVFTSFLKLFVS 158

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
               +    +H+  ++LG   + F+  +L++ YS CG  D+A  VF  I   D+V W  I
Sbjct: 159 LDKAEICWWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGI 218

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           ++C  + GC +++ ++ + M      PN +   + ++A+   G     +S+H  I K  +
Sbjct: 219 VSCYVENGCFEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCY 278

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E D  VG  L+ +Y + G +S   +VF  +   D V W+ + +RF      ++ + IF +
Sbjct: 279 ELDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIR 338

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M      PN  T   IL  C+     G G+QLH   +K   D +  V  +L+D+Y K   
Sbjct: 339 MREGFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEK 398

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++ A   F  L++K++ ++  +I  Y   GE   AL  FR+     +   E T +S L  
Sbjct: 399 MDTAVKLFAELSSKNVVSWNTVIVGYENLGEGGKALNMFREALRNQVSVTEVTFSSALGA 458

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +A++  G  +H +A+KT +   + VS +L+ MYAKCG I  A+ VF      D ASW
Sbjct: 459 CASLASMELGVQVHGLAIKTNNAKRVAVSNSLIDMYAKCGDIKVAQTVFNEMETIDVASW 518

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I GY  HGLG +AL  F +M      P+ +TF+ VLS CS+ GLI++G+  F S+  
Sbjct: 519 NALISGYSTHGLGRQALRIFDIMKGSDCKPNGLTFLGVLSGCSNAGLIDQGQDCFESMIC 578

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            +GI P ++H+ CM+ + GR+G+  +  N I      P+ ++W  +L A     N E   
Sbjct: 579 DHGIEPCLEHYTCMVRLFGRSGQLDKAMNLIEGIPYEPSVMIWRAMLSASMNQYNEEFAR 638

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           + AE++L++ PK E+ YV  S++ A   +W + + +R  +  +G+KKEP  SWIE  G
Sbjct: 639 RSAEEILKINPKDEATYVLLSNMYAGAKQWANVASIRKSMKEKGVKKEPGLSWIEHQG 696



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 140/473 (29%), Positives = 223/473 (47%), Gaps = 14/473 (2%)

Query: 69  AGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLD 128
           + + +H   ++ G  LD F +  L++ Y K G   +AL +F  + + + V++      L 
Sbjct: 67  SAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSY----VTLT 122

Query: 129 QQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTL 188
           Q   CQ+   +++ +     + N  V TS ++             +H+ I K G++S+  
Sbjct: 123 QGYACQDPVGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICWWLHSPIVKLGYDSNAF 182

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG 248
           VG AL++ Y   G V     VFE I  +D V W  + S + +    +  L++  +M + G
Sbjct: 183 VGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDG 242

Query: 249 FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
           F PN  TF   LKA   L    F K +H   +K   + +  VG  L+ +Y + G + DA 
Sbjct: 243 FMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAF 302

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
             F+ +   D+  ++ +I  + Q G    A+  F +MR   +  NEFTL+S LNGC+   
Sbjct: 303 KVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGK 362

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
               G  LH + VK G  LD++VS AL+ +YAKC  +D A  +F   + ++  SWN +I 
Sbjct: 363 CSGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIV 422

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG-KKHFSSIKKIYGI 487
           GY   G G KAL  FR  L       E+TF   L AC+ +  +E G + H  +IK     
Sbjct: 423 GYENLGEGGKALNMFREALRNQVSVTEVTFSSALGACASLASMELGVQVHGLAIK----- 477

Query: 488 TPTIKHFAC---MIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           T   K  A    +ID+  + G     +    E + T +   W  L+   S HG
Sbjct: 478 TNNAKRVAVSNSLIDMYAKCGDIKVAQTVFNEME-TIDVASWNALISGYSTHG 529



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 151/311 (48%), Gaps = 7/311 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A +VF  MP+ +VV W+ ++  + ++G   K + +F  M++     ++F+LS++L G
Sbjct: 298 MSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNG 357

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A       G+ +H + +++G  LD ++S +L+D+Y+KC   D A+K+F  +   +VV+W
Sbjct: 358 CAIGKCSGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSW 417

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRES---SVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
             +I   +  G   E  K  N+ RE+    V   +   +S + A         G  +H +
Sbjct: 418 NTVIVGYENLG---EGGKALNMFREALRNQVSVTEVTFSSALGACASLASMELGVQVHGL 474

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
             K        V N+L+ MY + G +     VF  +   D  SWNAL S +  +    Q 
Sbjct: 475 AIKTNNAKRVAVSNSLIDMYAKCGDIKVAQTVFNEMETIDVASWNALISGYSTHGLGRQA 534

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTI-KHSLDGNHVVGTSLVD 296
           LRIF  M     KPN  TF+ +L  CS+   +  G+      I  H ++      T +V 
Sbjct: 535 LRIFDIMKGSDCKPNGLTFLGVLSGCSNAGLIDQGQDCFESMICDHGIEPCLEHYTCMVR 594

Query: 297 MYDKSGCLEDA 307
           ++ +SG L+ A
Sbjct: 595 LFGRSGQLDKA 605


>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
          Length = 1241

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 182/585 (31%), Positives = 309/585 (52%)

Query: 15   NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVH 74
            N+V+WN ++ G+ E+G  +K + L+   K+   K    S +      ++   +  G+ VH
Sbjct: 613  NIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVH 672

Query: 75   AMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQ 134
               I++    D ++  SL+ MY+K G  ++A KVF ++ D +V    A+I+     G   
Sbjct: 673  CDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAY 732

Query: 135  EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALV 194
            +A  ++N M+      + F ++SL+   +  G    G ++HA + K   +S+  + +AL+
Sbjct: 733  DALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALL 792

Query: 195  SMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMC 254
            +MY + G       VF  +  +D V+W ++ + F         L +F  M  +G K +  
Sbjct: 793  TMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSD 852

Query: 255  TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
                ++ A   L +V  G  +H   IK  L+ +  V  SLVDMY K G  E A + F S+
Sbjct: 853  VMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSM 912

Query: 315  ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
             NK+L A+ ++I+ Y+  G  EM++    ++   G   +  ++ + L   S VA L  G+
Sbjct: 913  PNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGK 972

Query: 375  LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
             LH+  ++     D+ V  AL+ MY KCG +  A+ +F+    R+  +WN MI GY  HG
Sbjct: 973  TLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHG 1032

Query: 435  LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHF 494
              E+A+  F+ M      PDE+TF+ ++++CSH G++EEG   F  ++  YG+ P ++H+
Sbjct: 1033 NCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHY 1092

Query: 495  ACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEP 554
            A ++D+LGRAG+  +  +FI    +  +  VW  LL AC  H N+EL E  A+ LL++EP
Sbjct: 1093 ASVVDLLGRAGRLDDAYSFIRGMPIDADRSVWLCLLFACRAHRNMELGELVADNLLKMEP 1152

Query: 555  KMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
               SNYV   ++      W+  + +RA +  +G+KK P CSWIEV
Sbjct: 1153 ARGSNYVPLLNLYGEVEMWDRAANLRASMKGRGLKKSPGCSWIEV 1197



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 143/509 (28%), Positives = 253/509 (49%), Gaps = 10/509 (1%)

Query: 50  SKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF 109
           +KF+  ++LK  A+   +  G+ +HA  + +G   D +++ SL++MY KCGL  +AL+VF
Sbjct: 440 AKFTFPSLLKTCASLSNLYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVF 499

Query: 110 YRIKD-----PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTE 164
            ++ +     PD+  W  +I    + G  +E    F  M+E  ++P+ + L+ ++     
Sbjct: 500 DKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQELGIRPDGYSLSIVLGICNR 559

Query: 165 TGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDS-VSWNA 223
                 G  IH  I +  FE D  +  AL+ MY    R      +F  + ++ + V+WN 
Sbjct: 560 LSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNV 619

Query: 224 LFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS 283
           +   F +    ++ L ++     +  K    +F     ACS    + FG+Q+H   IK +
Sbjct: 620 MIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMN 679

Query: 284 LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFR 343
              +  V TSL+ MY KSG +EDA   FD + +K++    A+I+++   G A  AL  + 
Sbjct: 680 FQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYN 739

Query: 344 KMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403
           KM+      + FT++S L+GCS V +   GR +H+  +K     ++ + +AL+ MY KCG
Sbjct: 740 KMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCG 799

Query: 404 SIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           S +DA++VF     RD  +W  MI G+ ++   + AL+ FR M  EG   D      V+S
Sbjct: 800 STEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVIS 859

Query: 464 ACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPN 522
           A   +  +E G   H  +IK+  G+   +     ++D+  + G F E    +  +    N
Sbjct: 860 AGLGLENVELGHLIHGFAIKR--GLESDVFVACSLVDMYSKFG-FAESAEMVFSSMPNKN 916

Query: 523 ALVWENLLGACSWHGNIELDEKDAEKLLE 551
            + W +++   SW+G  E+      ++L+
Sbjct: 917 LVAWNSMISCYSWNGLPEMSINLLPQILQ 945



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 143/535 (26%), Positives = 259/535 (48%), Gaps = 11/535 (2%)

Query: 10   SMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKA 69
            S P++ V  WN +++GY + G  ++ +  FC M+++  +   +SLS VL       +  A
Sbjct: 508  SAPDITV--WNPVIDGYFKYGHFEEGLAQFCRMQELGIRPDGYSLSIVLGICNRLSWYMA 565

Query: 70   GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD-PDVVAWGAIITCLD 128
            G+ +H   IR     D +L  +L+ MYS C     A  +F ++++  ++VAW  +I    
Sbjct: 566  GRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFV 625

Query: 129  QQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTL 188
            + G  +++ ++++L +  + K      T    A +       G  +H  + K  F+ D  
Sbjct: 626  ENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPY 685

Query: 189  VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG 248
            V  +L++MY ++G V    +VF+ +  ++    NA+ S F         L ++ +M    
Sbjct: 686  VCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGE 745

Query: 249  FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
               +  T   +L  CS +    FG+ +HA  IK S+  N  + ++L+ MY K G  EDA 
Sbjct: 746  TPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDAD 805

Query: 309  VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
              F ++  +D+ A+ ++I  + Q    + AL  FR M  EG+K++   + S ++    + 
Sbjct: 806  SVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLE 865

Query: 369  TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
             +  G L+H  A+K G   D+FV+ +LV MY+K G  + AE VF     ++  +WN MI 
Sbjct: 866  NVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMIS 925

Query: 429  GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGI 487
             Y  +GL E ++     +L  G+  D ++   VL A S +  + +GK  H   I+    I
Sbjct: 926  CYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIR--LQI 983

Query: 488  TPTIKHFACMIDILGRAG--KFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
               ++    +ID+  + G  K+ ++   I E     N + W +++     HGN E
Sbjct: 984  PSDLQVENALIDMYVKCGCLKYAQL---IFENMPRRNLVTWNSMIAGYGSHGNCE 1035



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 121/425 (28%), Positives = 216/425 (50%), Gaps = 2/425 (0%)

Query: 1    MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
            +E AK+VF  + +  V   NA+++ +  +G     + L+  MK  E     F++S++L G
Sbjct: 700  VEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSG 759

Query: 61   FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +  G    G+ VHA  I+     +  +  +L+ MY KCG  ++A  VFY +K+ DVVAW
Sbjct: 760  CSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAW 819

Query: 121  GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            G++I    Q    ++A  +F  M +  VK +  V+TS++ A     +   G  IH    K
Sbjct: 820  GSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIK 879

Query: 181  YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             G ESD  V  +LV MY + G       VF ++ +++ V+WN++ S +     P+  + +
Sbjct: 880  RGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCYSWNGLPEMSINL 939

Query: 241  FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
              Q+L  GF  +  +   +L A SS++ +  GK LHA+ I+  +  +  V  +L+DMY K
Sbjct: 940  LPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVK 999

Query: 301  SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
             GCL+ A + F+++  ++L  + ++I  Y   G  E A++ F++M+      +E T  + 
Sbjct: 1000 CGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLAL 1059

Query: 361  LNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL-R 418
            +  CS    +  G  L   + ++ G    M    ++V +  + G +DDA +  +G  +  
Sbjct: 1060 ITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDA 1119

Query: 419  DTASW 423
            D + W
Sbjct: 1120 DRSVW 1124



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 175/368 (47%), Gaps = 9/368 (2%)

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I  L QQG   +A ++ +    S++   +F   SL++      +   G +IHA I   G 
Sbjct: 413 IKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGL 472

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-----DSVSWNALFSRFQDYESPDQGL 238
           +SD  +  +L++MY++ G +    +VF+ ++       D   WN +   +  Y   ++GL
Sbjct: 473 QSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGL 532

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
             F +M   G +P+  +  ++L  C+ LS    G+Q+H + I++  +G+  + T+L+ MY
Sbjct: 533 AQFCRMQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLETALIGMY 592

Query: 299 DKSGCLEDAGVAFDSLANK-DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
                  +A   F  L N+ ++ A+  +I  + + G  E +L+ +   + E  K    + 
Sbjct: 593 SSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASF 652

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
                 CS    L  GR +H   +K     D +V T+L+ MYAK GS++DA+ VF     
Sbjct: 653 TGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLD 712

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP-DEITFVVVLSACSHMGLIEEGKK 476
           ++    N MI  ++ +G    AL  +  M   G  P D  T   +LS CS +G  + G+ 
Sbjct: 713 KEVELRNAMISAFIGNGRAYDALGLYNKM-KAGETPVDSFTISSLLSGCSVVGSYDFGRT 771

Query: 477 -HFSSIKK 483
            H   IK+
Sbjct: 772 VHAEVIKR 779



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 107/226 (47%), Gaps = 12/226 (5%)

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH 385
           I +  Q G+   AL+   K     + + +FT  S L  C+ ++ L +GR +H+  V  G 
Sbjct: 413 IKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGL 472

Query: 386 LLDMFVSTALVAMYAKCGSIDDAEAVF-KGSALRDTAS----WNMMIGGYVKHGLGEKAL 440
             D +++T+L+ MY KCG +  A  VF K S  RD+A     WN +I GY K+G  E+ L
Sbjct: 473 QSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGL 532

Query: 441 EAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMID 499
             F  M + G  PD  +  +VL  C+ +     G++ H   I+ ++   P ++    +I 
Sbjct: 533 AQFCRMQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLE--TALIG 590

Query: 500 ILGRAGKFTEIENFITETKLTPNALVWENLLGACS----WHGNIEL 541
           +     +  E  +   + +   N + W  ++G       W  ++EL
Sbjct: 591 MYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLEL 636


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 203/661 (30%), Positives = 326/661 (49%), Gaps = 64/661 (9%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLKGFA 62
           A  +F  MP  +V SWN L++GY +S      +  F SM +  +   + F+L+  +K   
Sbjct: 110 AVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCG 169

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP------- 115
             G+      + AM  +     D  ++ +LVDM+ +CG  D A ++F RIK+P       
Sbjct: 170 ALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNS 229

Query: 116 ------------------------DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPN 151
                                   DVV+W  +++ L Q G  +EA  +   M+   V+ +
Sbjct: 230 MLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLD 289

Query: 152 QFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFE 211
               TS + A       R G+ +HA + +     D  V +ALV +Y ++G       VF 
Sbjct: 290 STTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFN 349

Query: 212 AIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGF 271
           ++  +++V+W  L S F  Y    + + +F QM  +    +      ++  C S  D+  
Sbjct: 350 SLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCL 409

Query: 272 GKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQ 331
           G+QLH+  +K       VV  SL+ MY K   L+ A   F  +  KD+ ++T++IT+Y+Q
Sbjct: 410 GRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQ 469

Query: 332 AGEAEMALKCFRKM-------------------------RL-------EGIKSNEFTLAS 359
            G    A + F  M                         R+       E ++ +  T  +
Sbjct: 470 VGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVT 529

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
              GC+ +     G  +    VK G ++D  V+ A++ MY+KCG I +A  VF    ++D
Sbjct: 530 LFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKD 589

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SWN MI GY +HG+G++A+E F  +L  G  PD I++V VLS CSH GL++EGK +F 
Sbjct: 590 IVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFD 649

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
            +K+ + I+P ++HF+CM+D+LGRAG  TE ++ I +  + P A VW  LL AC  HGN 
Sbjct: 650 MMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNN 709

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           EL E  A+ + EL+     +Y+  + I A  G+ +D + +R L+  +GIKK P  SW+EV
Sbjct: 710 ELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEV 769

Query: 600 D 600
           D
Sbjct: 770 D 770



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/390 (23%), Positives = 169/390 (43%), Gaps = 42/390 (10%)

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           + +  N +++ Y + GR+S    +F  +  +D  SWN L S +         L  F  M 
Sbjct: 90  NVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMH 149

Query: 246 LKGFK-PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
             G   PN  T    +K+C +L       QL A   K     +  V  +LVDM+ + G +
Sbjct: 150 RSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAV 209

Query: 305 EDA--------------------------GV-----AFDSLANKDLFAYTAIITSYAQAG 333
           + A                          GV      FDS+  +D+ ++  ++++ +Q+G
Sbjct: 210 DLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSG 269

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST 393
               AL     M+ +G++ +  T  S L  C+ +++L  G+ LH+  ++    +D +V++
Sbjct: 270 RVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVAS 329

Query: 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP 453
           ALV +YAK G   +A+ VF     R+  +W ++I G++++G   +++E F  M  E    
Sbjct: 330 ALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTL 389

Query: 454 DEITFVVVLSA-CSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIE- 511
           D+     ++S  CS M L    + H   +K   G    +     +I +  +       E 
Sbjct: 390 DQFALATLISGCCSRMDLCLGRQLHSLCLKS--GQIQAVVVSNSLISMYAKCDNLQSAEA 447

Query: 512 --NFITETKLTPNALVWENLLGACSWHGNI 539
              F+ E  +      W +++ A S  GN+
Sbjct: 448 IFRFMNEKDIVS----WTSMITAYSQVGNV 473



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 77/367 (20%), Positives = 142/367 (38%), Gaps = 72/367 (19%)

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA-------- 307
           F   L++C +   +   + LH   +   L     +  +L+  Y   G L DA        
Sbjct: 27  FADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDI 86

Query: 308 -------------GVA-----------FDSLANKDLFAYTAIITSYAQAGEAEMALKCFR 343
                        G A           F  +  +D+ ++  +++ Y Q+ +  ++L+ F 
Sbjct: 87  AHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFL 146

Query: 344 KMRLEGIK-SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC 402
            M   G    N FTLA  +  C  +   +    L ++  K     D  V+ ALV M+ +C
Sbjct: 147 SMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRC 206

Query: 403 GSIDDAEAVF----------KGSAL---------------------RDTASWNMMIGGYV 431
           G++D A  +F          + S L                     RD  SWNMM+    
Sbjct: 207 GAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALS 266

Query: 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPT 490
           + G   +AL+    M  +G   D  T+   L+AC+ +  +  GK+ H   I+ +  I P 
Sbjct: 267 QSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPY 326

Query: 491 IKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG----NIELDEKDA 546
           +   + ++++  ++G F E +          N + W  L+     +G    ++EL  +  
Sbjct: 327 VA--SALVELYAKSGCFKEAKGVFNSLH-DRNNVAWTVLISGFLQYGCFTESVELFNQMR 383

Query: 547 EKLLELE 553
            +L+ L+
Sbjct: 384 AELMTLD 390


>gi|125555425|gb|EAZ01031.1| hypothetical protein OsI_23065 [Oryza sativa Indica Group]
          Length = 671

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 194/603 (32%), Positives = 326/603 (54%), Gaps = 6/603 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEK-KFSKFSLSTVLKGF 61
           A+ VF  MP  NVVSW+ L+   +  G     + LF  M +  E+ + + F+++ ++ G 
Sbjct: 56  ARGVFDEMPRRNVVSWSVLIVASSRLGVLGDALSLFAGMLRGGERDRPNSFTVAALVAGC 115

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           A +    AG+ VHA A++LG   D+ ++ +LVDMY+KCG   ++ + F       V++W 
Sbjct: 116 ARAKDAVAGEQVHASAVKLGVDEDESVAGTLVDMYAKCGRVGSSWRAFVLTPQRSVLSWT 175

Query: 122 AIITCLDQQGCC---QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           ++I CL   G       A  +F  M    V P     + +++          G+ +H  +
Sbjct: 176 SMIACLVNHGDSGYRDTAIVLFKKMLVLKVWPTNATFSCILKVFDVPELLPSGKQVHGCL 235

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K G E D  +G AL++MY   G +   +R+   I H D+ S  +L + +       + +
Sbjct: 236 VKMGTEVDPALGTALLAMYGRCGGMDEITRLACRIRH-DAFSRTSLLTAYARNGCNMEAV 294

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           R+F  ML+     +      +L+ CSSL  +   K++H + +K+    + ++  ++V +Y
Sbjct: 295 RVFRDMLMGHMPIDQSAITSLLQVCSSLGQLRVVKEIHCYALKNFFRLDTLLLNAIVTVY 354

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G +  + + F++L NKD  ++TA++T Y Q   ++ AL  FR+M  +G++S+ F + 
Sbjct: 355 GKCGDIASSEIVFNTLENKDTISWTALLTCYVQNDLSQEALFFFREMVRKGLESSIFCIT 414

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L  CS  ++L+ G  +HS  VK G   D  V  ALV MYAKCG +  A  +F  +  R
Sbjct: 415 SVLRACSATSSLSCGWQIHSRVVKLGVDDDTSVENALVTMYAKCGVVQVALKIFNSTRNR 474

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
              SWN +I  + +HG    A++ F MM +E   PD+ TFV +LS+CS MGL+ EG ++F
Sbjct: 475 GIISWNALITSFSQHGNEVAAIQLFDMMQEEMVCPDDYTFVGLLSSCSRMGLVAEGCEYF 534

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
             +K  Y + P ++H+ CM+D+  RAG+F++   FI      P+ LVWE LL +C  HGN
Sbjct: 535 KQMKTKYNLEPKMEHYTCMVDLFARAGRFSDAMKFIDAMPCQPDQLVWEALLASCRVHGN 594

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           ++L    A+K+LE++P+  S Y+  S I A+   W++ +  R LL  Q ++K+   S ++
Sbjct: 595 LDLGRMAAKKILEIKPEDPSPYIILSSIHASIDMWDEKARNRTLLDFQQLRKDVGSSQLD 654

Query: 599 VDG 601
             G
Sbjct: 655 SQG 657



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 136/500 (27%), Positives = 226/500 (45%), Gaps = 15/500 (3%)

Query: 71  QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
           + VH  A++LGC    +L  +L+  Y   G   +A  VF  +   +VV+W  +I    + 
Sbjct: 22  RAVHGAAVKLGCLASTYLCNNLLLSYQARGHLADARGVFDEMPRRNVVSWSVLIVASSRL 81

Query: 131 GCCQEAAKIFNLMRESSV--KPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTL 188
           G   +A  +F  M       +PN F + +LV       D   GE +HA   K G + D  
Sbjct: 82  GVLGDALSLFAGMLRGGERDRPNSFTVAALVAGCARAKDAVAGEQVHASAVKLGVDEDES 141

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS---RFQDYESPDQGLRIFYQML 245
           V   LV MY + GRV    R F     +  +SW ++ +      D    D  + +F +ML
Sbjct: 142 VAGTLVDMYAKCGRVGSSWRAFVLTPQRSVLSWTSMIACLVNHGDSGYRDTAIVLFKKML 201

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
           +    P   TF  ILK       +  GKQ+H   +K   + +  +GT+L+ MY + G ++
Sbjct: 202 VLKVWPTNATFSCILKVFDVPELLPSGKQVHGCLVKMGTEVDPALGTALLAMYGRCGGMD 261

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
           +           D F+ T+++T+YA+ G    A++ FR M +  +  ++  + S L  CS
Sbjct: 262 EI-TRLACRIRHDAFSRTSLLTAYARNGCNMEAVRVFRDMLMGHMPIDQSAITSLLQVCS 320

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
            +  L   + +H  A+K    LD  +  A+V +Y KCG I  +E VF     +DT SW  
Sbjct: 321 SLGQLRVVKEIHCYALKNFFRLDTLLLNAIVTVYGKCGDIASSEIVFNTLENKDTISWTA 380

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIY 485
           ++  YV++ L ++AL  FR M+ +G          VL ACS    +  G +  S + K+ 
Sbjct: 381 LLTCYVQNDLSQEALFFFREMVRKGLESSIFCITSVLRACSATSSLSCGWQIHSRVVKL- 439

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKD 545
           G+         ++ +  + G   ++   I  +      + W  L+ + S HGN    E  
Sbjct: 440 GVDDDTSVENALVTMYAKCG-VVQVALKIFNSTRNRGIISWNALITSFSQHGN----EVA 494

Query: 546 AEKLLELEPKMESNYVFPSD 565
           A +L ++   M+   V P D
Sbjct: 495 AIQLFDM---MQEEMVCPDD 511



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/175 (19%), Positives = 77/175 (44%), Gaps = 9/175 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +++A ++F S     ++SWNAL+  +++ G+    + LF  M++       ++   +L  
Sbjct: 461 VQVALKIFNSTRNRGIISWNALITSFSQHGNEVAAIQLFDMMQEEMVCPDDYTFVGLLSS 520

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            +  G +  G +    M  +            +VD++++ G   +A+K    +   PD +
Sbjct: 521 CSRMGLVAEGCEYFKQMKTKYNLEPKMEHYTCMVDLFARAGRFSDAMKFIDAMPCQPDQL 580

Query: 119 AWGAIITCLDQQGCCQ----EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
            W A++      G        A KI  +  E    P+ +++ S + A+ +  D++
Sbjct: 581 VWEALLASCRVHGNLDLGRMAAKKILEIKPED---PSPYIILSSIHASIDMWDEK 632


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 187/601 (31%), Positives = 324/601 (53%), Gaps = 5/601 (0%)

Query: 1   MELAKRVFKSMPE-LNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           ++ A RVF+ M +  +V SWN+ ++G  ++G   + + LF  M+      + ++   VL+
Sbjct: 214 LDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQ 273

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSC-SLVDMYSKCGLADNALKVFYRIKDPDVV 118
             A    +  G+ +HA  ++ G   +  + C +L+ MY++CG  D+AL+VF  I D D +
Sbjct: 274 VCAELAQLNHGRELHAALLKCGTEFN--IQCNALLVMYARCGWVDSALRVFREIGDKDYI 331

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +W ++++C  Q     EA   F  M ++   P+   + SL+ A    G    G  +HA  
Sbjct: 332 SWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYA 391

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K   +SD  + N L+ MY++   V   +RVF+ +  +D VSW  + + +       + +
Sbjct: 392 VKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAI 451

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
             F     +G K +      IL+ACS L  +   KQ+H++ I++ L  + ++   ++D+Y
Sbjct: 452 GKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGLL-DLILKNRIIDIY 510

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            + G +  A   F+ L  KD+  +T+++  +A+ G    A+  F KM   GI+ +   L 
Sbjct: 511 GECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALV 570

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
             L   + +++L  G+ +H   ++    ++  V ++LV MY+ CGS++ A  VF  +  +
Sbjct: 571 GILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCK 630

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D   W  MI     HG G++A+  F+ ML+ G  PD ++F+ +L ACSH  L++EGK + 
Sbjct: 631 DVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYL 690

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
             +   Y + P  +H+AC++D+LGR+G+  E   FI    L P ++VW  LLGAC  H N
Sbjct: 691 DMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKN 750

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
            EL     +KLLELEP    NYV  S++ A  G+WN+   +R  ++ QG++K+P+CSWIE
Sbjct: 751 HELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQGLRKDPACSWIE 810

Query: 599 V 599
           +
Sbjct: 811 I 811



 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 153/541 (28%), Positives = 269/541 (49%), Gaps = 11/541 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKF----SLSTVLK 59
           A R+F  MP   V SWNAL+     SG   + + ++ +M+  E          +L++VLK
Sbjct: 112 AHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLK 171

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD-PDVV 118
                G  + G  VH +A++ G      ++ +LV MY+KCGL D+AL+VF  ++D  DV 
Sbjct: 172 ACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVA 231

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +W + I+   Q G   EA  +F  M+      N +    +++   E      G  +HA +
Sbjct: 232 SWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAAL 291

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K G E + +  NAL+ MY   G V    RVF  I  +D +SWN++ S +       + +
Sbjct: 292 LKCGTEFN-IQCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAI 350

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
             F +M+  GF P+    + +L A   L  +  G+++HA+ +K  LD +  +  +L+DMY
Sbjct: 351 DFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMY 410

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K   +E +   FD +  KD  ++T II  YAQ+     A+  FR  + EGIK +   + 
Sbjct: 411 IKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMG 470

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L  CS + +++  + +HS A++ G LLD+ +   ++ +Y +CG +  A  +F+    +
Sbjct: 471 SILEACSGLKSISLLKQVHSYAIRNG-LLDLILKNRIIDIYGECGEVCYALNIFEMLDKK 529

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-H 477
           D  +W  M+  + ++GL  +A+  F  ML+ G  PD +  V +L A + +  + +GK+ H
Sbjct: 530 DIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIH 589

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
              I+  + +   +   + ++D+    G          E K   + ++W  ++ A   HG
Sbjct: 590 GFLIRGKFPVEGAV--VSSLVDMYSGCGSMNYALKVFDEAK-CKDVVLWTAMINATGMHG 646

Query: 538 N 538
           +
Sbjct: 647 H 647



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 136/477 (28%), Positives = 223/477 (46%), Gaps = 22/477 (4%)

Query: 67  IKAGQVVHAMAIRLGCALDK---FLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +  G+ +HA A+  G   D    FL+  L+ MY KCG   +A ++F  +    V +W A+
Sbjct: 71  VSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNAL 130

Query: 124 ITCLDQQGCCQEAAKIFNLMRESS----VKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           I      G   EA  ++  MR S       P+   L S+++A    GD RCG  +H +  
Sbjct: 131 IGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAV 190

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH-QDSVSWNALFSRFQDYESPDQGL 238
           K G +  TLV NALV MY + G +    RVFE +   +D  SWN+  S         + L
Sbjct: 191 KSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEAL 250

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            +F +M   GF  N  T + +L+ C+ L+ +  G++LHA  +K   + N +   +L+ MY
Sbjct: 251 DLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFN-IQCNALLVMY 309

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            + G ++ A   F  + +KD  ++ ++++ Y Q      A+  F +M   G   +   + 
Sbjct: 310 ARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIV 369

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L+    +  L NGR +H+ AVK     D+ ++  L+ MY KC S++ +  VF    ++
Sbjct: 370 SLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIK 429

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D  SW  +I  Y +     +A+  FR    EG   D +    +L ACS       G K  
Sbjct: 430 DHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACS-------GLKSI 482

Query: 479 SSIKKI--YGITPTIKHFAC---MIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
           S +K++  Y I   +        +IDI G  G+     N I E     + + W +++
Sbjct: 483 SLLKQVHSYAIRNGLLDLILKNRIIDIYGECGEVCYALN-IFEMLDKKDIVTWTSMV 538


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 168/498 (33%), Positives = 280/498 (56%), Gaps = 2/498 (0%)

Query: 105 ALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK-PNQFVLTSLVRATT 163
           A  VF   +  DV+ W +++         + A + +  M E S   P++F   SL++   
Sbjct: 31  AYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 164 ETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNA 223
              + + G+ +H  + KY   SD  +   L++MY   G +     +FE + H++ V W +
Sbjct: 91  LLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTS 150

Query: 224 LFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS 283
           + S +     P++ L ++ +M   GF P+  T   ++ AC+ L D+G G +LH+H  +  
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMD 210

Query: 284 LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFR 343
           +    V+G++LV+MY K G L+ A   FD L++KD++A++A+I  Y +   +  AL+ FR
Sbjct: 211 MKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFR 270

Query: 344 KMRL-EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC 402
           ++     ++ NE T+ + ++ C+ +  L  GR +H    +T     + ++ +L+ M++KC
Sbjct: 271 EVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKC 330

Query: 403 GSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVL 462
           G ID A+ +F   + +D  SWN M+ G   HGLG +AL  F +M      PDEITF+ VL
Sbjct: 331 GDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVL 390

Query: 463 SACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPN 522
           +ACSH GL++EGKK F  I+ +YG+    +H+ CM+D+L RAG   E   FI    L P+
Sbjct: 391 TACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPD 450

Query: 523 ALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRAL 582
             +W ++LGAC  + N+EL E+ A  LLELEP  +  Y+  S+I A +  WN+   VR L
Sbjct: 451 GAIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGVYILLSNIYARRKMWNEVKKVREL 510

Query: 583 LSSQGIKKEPSCSWIEVD 600
           ++ +GI+K P CS + +D
Sbjct: 511 MNEKGIQKTPGCSSVVID 528



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 112/443 (25%), Positives = 214/443 (48%), Gaps = 7/443 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKF-SKFSLSTVLKGFA 62
           A  VF     L+V++WN++L  +  S   ++ +  +  M +  +    +F+  ++LKG A
Sbjct: 31  AYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
                K G+V+H   ++     D ++  +L++MY+ CG   +A  +F R+   + V W +
Sbjct: 91  LLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTS 150

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I+   +  C  EA  ++  M E    P++  + +LV A  E  D   G  +H+ I +  
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMD 210

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            +   ++G+ALV+MY + G +    +VF+ ++ +D  +W+AL   +       + L++F 
Sbjct: 211 MKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFR 270

Query: 243 QML-LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
           ++      +PN  T + ++ AC+ L D+  G+ +H +  +     +  +  SL+DM+ K 
Sbjct: 271 EVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKC 330

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G ++ A   FDS++ KDL ++ +++   A  G    AL  F  M+   ++ +E T    L
Sbjct: 331 GDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVL 390

Query: 362 NGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-D 419
             CS    +  G +L + I    G  L       +V +  + G + +A    +   L+ D
Sbjct: 391 TACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPD 450

Query: 420 TASWNMMIGG---YVKHGLGEKA 439
            A W  M+G    Y    LGE+A
Sbjct: 451 GAIWGSMLGACRVYNNLELGEEA 473



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 179/354 (50%), Gaps = 12/354 (3%)

Query: 191 NALVSMYMENGR--VSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG 248
           N L++  +  G   V Y   VF      D ++WN++   F +   P + L+ + +ML + 
Sbjct: 14  NKLIAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERS 73

Query: 249 FK-PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
              P+  TF  +LK C+ L +   GK LH   +K+ L  +  + T+L++MY   G L+ A
Sbjct: 74  RNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSA 133

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367
              F+ + +++   +T++I+ Y +      AL  ++KM  +G   +E T+A+ ++ C+ +
Sbjct: 134 RFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAEL 193

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
             L  G  LHS   +    +   + +ALV MYAKCG +  A  VF   + +D  +W+ +I
Sbjct: 194 KDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALI 253

Query: 428 GGYVKHGLGEKALEAFRMML-DEGYVPDEITFVVVLSACSHMGLIEEGK---KHFSSIKK 483
            GYVK+    +AL+ FR +       P+E+T + V+SAC+ +G +E G+    + +  +K
Sbjct: 254 FGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQK 313

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
            + ++        +ID+  + G     +  I ++    + + W +++   + HG
Sbjct: 314 GHSVSLN----NSLIDMFSKCGDIDAAKR-IFDSMSYKDLISWNSMVNGLALHG 362


>gi|297842209|ref|XP_002888986.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334827|gb|EFH65245.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 717

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 187/600 (31%), Positives = 316/600 (52%), Gaps = 8/600 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A+ VF  +   +VVSW  +L+GY +S D    + +F  M+    + +  ++++V+  
Sbjct: 123 MAEAREVFSRISNPSVVSWTVMLSGYTKSNDAFSALEIFREMRHSGVEINSCTVTSVISA 182

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD---PDV 117
                 +     VHA   + G  LD  ++ +L+ M SK G  + + +VF  + D    ++
Sbjct: 183 CGRPSMVCEASQVHAWVFKSGFYLDTSVAAALISMNSKSGDINLSERVFEDLDDIRRQNI 242

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           V    ++T   Q     +A ++F  M +  + P++F + SL+           G+ +H+ 
Sbjct: 243 V--NVMVTSFSQNKKPGKAIRLFTRMLQEGLNPDEFSVCSLLSVLDCL---NLGKQVHSY 297

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
             K G   D  VG++L +MY + G +     +F+ I  +D+  W ++ S F +Y    + 
Sbjct: 298 TLKSGLILDLTVGSSLFTMYSKCGSLEESYSLFQEIPFKDNACWASMISGFNEYGYLREA 357

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           + +F +ML +G  P+  T   +L  CSSL  +   K++H +T++  +D    +G++LV+ 
Sbjct: 358 IGLFSEMLDEGTSPDESTLAAVLTVCSSLPSLPRSKEIHGYTLRAGIDRGMPLGSALVNT 417

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K G L+ A   +D L   D  + +++I+ Y+Q G  +     FR M + G   + + +
Sbjct: 418 YSKCGSLKLARKVYDRLPEMDPVSCSSLISGYSQHGLVQDGFLLFRDMVMSGFSMDSYAI 477

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           +S L           G  +H+   K G   +  V ++L+ MY+K GSI+D    F     
Sbjct: 478 SSILKAAVLSEESELGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIEDCCKAFSQING 537

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
            D  +W  +I  Y +HG   +AL+ + +M ++G+ PD++TFV VLSACSH GL+EEG  H
Sbjct: 538 PDLIAWTALIASYAQHGKANEALQVYCLMKEKGFKPDKVTFVGVLSACSHGGLVEEGYFH 597

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
            +S+ K YGI P  +H+ CM+D LGR+G+  E ENFI    + P+ALVW  LL AC  +G
Sbjct: 598 LNSMVKDYGIEPENRHYVCMVDALGRSGRLREAENFINTRPIKPDALVWGTLLAACKIYG 657

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           ++EL +  A+K +ELEP     YV  S+I A  G W++    R L+   G++KEP  S +
Sbjct: 658 DVELGKLAAKKAIELEPSDAGAYVSLSNILAEVGEWDEVEETRKLMKGTGVQKEPGWSSV 717



 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 165/545 (30%), Positives = 267/545 (48%), Gaps = 23/545 (4%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E A +VF+     NV  WN ++ G   + +   V  LF  M +  +K   ++ S+VL   
Sbjct: 24  EDAYKVFRDTLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCNGFQKPDSYTYSSVLAAC 83

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           A+   ++ G+VV A  I+ G A D F+  S+VD+Y+KCG    A +VF RI +P VV+W 
Sbjct: 84  ASLEELRFGKVVQARVIKCG-AEDVFVCTSIVDLYAKCGHMAEAREVFSRISNPSVVSWT 142

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            +++   +      A +IF  MR S V+ N   +TS++ A            +HA + K 
Sbjct: 143 VMLSGYTKSNDAFSALEIFREMRHSGVEINSCTVTSVISACGRPSMVCEASQVHAWVFKS 202

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFE---AIAHQDSVSWNALFSRFQDYESPDQGL 238
           GF  DT V  AL+SM  ++G ++   RVFE    I  Q+ V  N + + F   + P + +
Sbjct: 203 GFYLDTSVAAALISMNSKSGDINLSERVFEDLDDIRRQNIV--NVMVTSFSQNKKPGKAI 260

Query: 239 RIFYQMLLKGFKPN---MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
           R+F +ML +G  P+   +C+ + +L        +  GKQ+H++T+K  L  +  VG+SL 
Sbjct: 261 RLFTRMLQEGLNPDEFSVCSLLSVLDC------LNLGKQVHSYTLKSGLILDLTVGSSLF 314

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
            MY K G LE++   F  +  KD   + ++I+ + + G    A+  F +M  EG   +E 
Sbjct: 315 TMYSKCGSLEESYSLFQEIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDEGTSPDES 374

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
           TLA+ L  CS + +L   + +H   ++ G    M + +ALV  Y+KCGS+  A  V+   
Sbjct: 375 TLAAVLTVCSSLPSLPRSKEIHGYTLRAGIDRGMPLGSALVNTYSKCGSLKLARKVYDRL 434

Query: 416 ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
              D  S + +I GY +HGL +     FR M+  G+  D      +L A       E G 
Sbjct: 435 PEMDPVSCSSLISGYSQHGLVQDGFLLFRDMVMSGFSMDSYAISSILKAAVLSEESELGA 494

Query: 476 KHFSSIKKIYGIT-PTIKHFACMIDILGRAGKFTEIENFITETKLT--PNALVWENLLGA 532
           +  + I KI   T P++        +L    KF  IE+          P+ + W  L+ +
Sbjct: 495 QVHAYITKIGLCTEPSVGS-----SLLTMYSKFGSIEDCCKAFSQINGPDLIAWTALIAS 549

Query: 533 CSWHG 537
            + HG
Sbjct: 550 YAQHG 554



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 116/390 (29%), Positives = 195/390 (50%), Gaps = 11/390 (2%)

Query: 91  SLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRE---SS 147
           SL+D +SK    ++A KVF      +V  W  II    +    Q    +F+L  E     
Sbjct: 12  SLIDAFSKNLRFEDAYKVFRDTLSANVYCWNTIIAGALRN---QNYGAVFDLFHEMCNGF 68

Query: 148 VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGS 207
            KP+ +  +S++ A     + R G+ + A + K G E D  V  ++V +Y + G ++   
Sbjct: 69  QKPDSYTYSSVLAACASLEELRFGKVVQARVIKCGAE-DVFVCTSIVDLYAKCGHMAEAR 127

Query: 208 RVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLS 267
            VF  I++   VSW  + S +         L IF +M   G + N CT   ++ AC   S
Sbjct: 128 EVFSRISNPSVVSWTVMLSGYTKSNDAFSALEIFREMRHSGVEINSCTVTSVISACGRPS 187

Query: 268 DVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN-KDLFAYTAII 326
            V    Q+HA   K     +  V  +L+ M  KSG +  +   F+ L + +       ++
Sbjct: 188 MVCEASQVHAWVFKSGFYLDTSVAAALISMNSKSGDINLSERVFEDLDDIRRQNIVNVMV 247

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL 386
           TS++Q  +   A++ F +M  EG+  +EF++ S L   S +  L  G+ +HS  +K+G +
Sbjct: 248 TSFSQNKKPGKAIRLFTRMLQEGLNPDEFSVCSLL---SVLDCLNLGKQVHSYTLKSGLI 304

Query: 387 LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM 446
           LD+ V ++L  MY+KCGS++++ ++F+    +D A W  MI G+ ++G   +A+  F  M
Sbjct: 305 LDLTVGSSLFTMYSKCGSLEESYSLFQEIPFKDNACWASMISGFNEYGYLREAIGLFSEM 364

Query: 447 LDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
           LDEG  PDE T   VL+ CS +  +   K+
Sbjct: 365 LDEGTSPDESTLAAVLTVCSSLPSLPRSKE 394



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 97/356 (27%), Positives = 180/356 (50%), Gaps = 17/356 (4%)

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS---RFQDYESPDQGLRIFYQM 244
           +V ++L+  + +N R     +VF      +   WN + +   R Q+Y +      +F++M
Sbjct: 8   VVQSSLIDAFSKNLRFEDAYKVFRDTLSANVYCWNTIIAGALRNQNYGAV---FDLFHEM 64

Query: 245 LLKGF-KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
              GF KP+  T+  +L AC+SL ++ FGK + A  IK   + +  V TS+VD+Y K G 
Sbjct: 65  C-NGFQKPDSYTYSSVLAACASLEELRFGKVVQARVIKCGAE-DVFVCTSIVDLYAKCGH 122

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           + +A   F  ++N  + ++T +++ Y ++ +A  AL+ FR+MR  G++ N  T+ S ++ 
Sbjct: 123 MAEAREVFSRISNPSVVSWTVMLSGYTKSNDAFSALEIFREMRHSGVEINSCTVTSVISA 182

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG-SALRDTAS 422
           C   + +     +H+   K+G  LD  V+ AL++M +K G I+ +E VF+    +R    
Sbjct: 183 CGRPSMVCEASQVHAWVFKSGFYLDTSVAAALISMNSKSGDINLSERVFEDLDDIRRQNI 242

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSI 481
            N+M+  + ++    KA+  F  ML EG  PDE +   +LS    + L   GK+ H  ++
Sbjct: 243 VNVMVTSFSQNKKPGKAIRLFTRMLQEGLNPDEFSVCSLLSVLDCLNL---GKQVHSYTL 299

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           K   G+   +   + +  +  + G   E  +   E     NA  W +++   + +G
Sbjct: 300 KS--GLILDLTVGSSLFTMYSKCGSLEESYSLFQEIPFKDNA-CWASMISGFNEYG 352


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 186/599 (31%), Positives = 316/599 (52%), Gaps = 2/599 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
            + VF  + E  +  WN +++ Y+ SG+  + ++LF  M ++  K + ++ S++LK FA 
Sbjct: 204 GRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAA 263

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ G+ VH +  +LG      +  SL+  Y        A K+F  + D DV++W ++
Sbjct: 264 VARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSM 323

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG- 182
           I+   + G      +IF  M    V  +   + ++  A    G    G+ +H+   K   
Sbjct: 324 ISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAAT 383

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            + +    N L+ MY + G ++   RVFE +  +  VSW ++ + +      D  +++F 
Sbjct: 384 LDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFD 443

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M  +G  P++     IL AC+   ++  GK +H +  +++L+ N  V  +L DMY K G
Sbjct: 444 EMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCG 503

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            ++DA   F  +  KD+ ++  +I  Y +      AL  F +M+ E  K +  T+A  L 
Sbjct: 504 SMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILP 562

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+ +A L  GR +H  A++ G+  D +V+ A+V MY KCG +  A ++F     +D  S
Sbjct: 563 ACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVS 622

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           W +MI GY  HG G +A+  F  M   G  PDE++F+ +L ACSH GL++EG K F+ +K
Sbjct: 623 WTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMK 682

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           K   I P ++H+ACM+D+L R G   +   FI    + P+A +W  LL  C  H +++L 
Sbjct: 683 KECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLA 742

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           EK AE++ ELEP+    YV  ++I A   +W +   +R  +  +G+KK P CSWIE+ G
Sbjct: 743 EKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKG 801



 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 167/585 (28%), Positives = 286/585 (48%), Gaps = 45/585 (7%)

Query: 26  YAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALD 85
           + E GD +  M L CS ++    F   +  ++L+  A    I+ G+ V ++    G  +D
Sbjct: 127 FCEVGDLKNAMELLCSSQN--SNFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMID 184

Query: 86  KFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRE 145
             L   LV MY KCG       VF ++ +  +  W  +I+     G   E+  +F  M E
Sbjct: 185 GILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLE 244

Query: 146 SSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSY 205
             +KPN +  +S+++          G  +H +ICK GF S   V N+L+S Y    +V  
Sbjct: 245 LGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRC 304

Query: 206 GSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSS 265
             ++F+ +  +D +SWN++ S +      D+G+ IF +ML+ G   ++ T + +  AC++
Sbjct: 305 AQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACAN 364

Query: 266 LSDVGFGKQLHAHTIK-HSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA 324
           +  +  GK LH+++IK  +LD       +L+DMY K G L  A   F+ +  K + ++T+
Sbjct: 365 IGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTS 424

Query: 325 IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           +IT Y + G ++ A+K F +M+  G+  + + + S LN C+    L +G+++H    +  
Sbjct: 425 MITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENN 484

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
              + FVS AL  MYAKCGS+ DA  VF     +D  SWN MIGGY K+ L  +AL  F 
Sbjct: 485 LETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFA 544

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYG----ITPTI--KHFACM 497
            M  E   PD  T   +L AC+ +  +++G++ H  +++  Y     +T  +   +  C 
Sbjct: 545 EMQRESK-PDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCG 603

Query: 498 IDILGRA-----------------------GKFTEIENFITETKLT---PNALVWENLLG 531
           + +L R+                       G  +E  N   + ++T   P+ + + ++L 
Sbjct: 604 LLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILY 663

Query: 532 ACSWHGNIELDE-----KDAEKLLELEPKMESNYVFPSDISATQG 571
           ACS  G   LDE        +K  ++EP +E +Y    D+ A  G
Sbjct: 664 ACSHSG--LLDEGWKIFNIMKKECQIEPNLE-HYACMVDLLARTG 705



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 112/227 (49%), Gaps = 3/227 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A  VF  M + +V+SWN ++ GY ++    + + LF  M+  E K    +++ +L  
Sbjct: 505 MKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQ-RESKPDGTTVACILPA 563

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+   +  G+ +H  A+R G + DK+++ ++VDMY KCGL   A  +F  I + D+V+W
Sbjct: 564 CASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSW 623

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I      G   EA   FN MR + ++P++    S++ A + +G    G  I  ++ K
Sbjct: 624 TVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKK 683

Query: 181 Y-GFESDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALF 225
               E +      +V +    G +    +  +A+    D+  W AL 
Sbjct: 684 ECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALL 730



 Score = 46.2 bits (108), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 84/176 (47%), Gaps = 17/176 (9%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           LA+ +F  +P  ++VSW  ++ GY   G G + ++ F  M+    +  + S  ++L   +
Sbjct: 607 LARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACS 666

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLS--CSLVDMYSKCGLADNALKVFYRIK----DPD 116
           +SG +  G  +  + ++  C ++  L     +VD+ ++ G   N +K    IK     PD
Sbjct: 667 HSGLLDEGWKIFNI-MKKECQIEPNLEHYACMVDLLARTG---NLVKAHKFIKAMPIKPD 722

Query: 117 VVAWGAIIT-CL---DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ 168
              WGA++  C    D +   + A +IF L  E++     +VL + + A  E  ++
Sbjct: 723 ATIWGALLCGCRIHHDVKLAEKVAERIFELEPENT---GYYVLLANIYAEAEKWEE 775


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 182/535 (34%), Positives = 294/535 (54%), Gaps = 1/535 (0%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +K  Q +HA  I  G   + FLS SL++ Y  CGL  +A ++F+     +VV+W  +I+ 
Sbjct: 37  LKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTILISG 96

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
           L +  C  EA  +F  M   + KPN   ++S++ A    G  R  +S+H    + GFE +
Sbjct: 97  LAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGN 156

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             V  ALV MY + G +    ++FE+++ ++ VSWNA+ S + D+   ++ + +F  M  
Sbjct: 157 VFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRR 216

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           KG   +  T + ++ A  S+  +  G  +H   I+   + +  + T+L+D+Y    C++D
Sbjct: 217 KGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDD 276

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR-LEGIKSNEFTLASCLNGCS 365
           A   F  +  KD+ A+T ++T ++     + A+K F KM  ++ +K +   L   L+ CS
Sbjct: 277 AHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCS 336

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
               L  GR +H++A+KT    ++FV +A++ MYA CG+++DA+  F G   +D   WN 
Sbjct: 337 HSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNA 396

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIY 485
           MI G   +G G  A++ F  M   G  PDE TFV VL ACSH G++ EG + F  + K  
Sbjct: 397 MIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTS 456

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKD 545
              P ++H+AC+IDILGRAG+     +FI      P+  V+  LLGAC  HGNI+L  + 
Sbjct: 457 HDIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEI 516

Query: 546 AEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           ++K+ E+EP     YV  S++ A  G W      RA L S+ +KK+P  S IE++
Sbjct: 517 SQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRLKKDPGFSSIEIN 571



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 135/467 (28%), Positives = 230/467 (49%), Gaps = 13/467 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AK++F   P  NVVSW  L++G A++    + + +F  M     K +  ++S+VL  FAN
Sbjct: 75  AKQIFHHTPCKNVVSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFAN 134

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G I+  + VH   +R G   + F+  +LVDMYSK G    A ++F  + + +VV+W AI
Sbjct: 135 LGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAI 194

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           ++     G  +EA  +FNLMR   +  + + + SL+ A+   G  + G  IH  I + G+
Sbjct: 195 VSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGY 254

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E+D  +  AL+ +Y+ +  V    RVF  +  +D  +W  + + F      D+ ++ F +
Sbjct: 255 ENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNK 314

Query: 244 ML-LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           ML ++  K +    + IL +CS    +  G+++HA  IK     N  VG++++DMY   G
Sbjct: 315 MLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCG 374

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            LEDA   F  +  KD+  + A+I      G    A+  F +M+  G+  +E T  S L 
Sbjct: 375 NLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLY 434

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTA-LVAMYAKCGSIDDAEAVFKGSALR-DT 420
            CS    +  G  +    VKT H +      A ++ +  + G +D A +       + D 
Sbjct: 435 ACSHAGMVYEGLQIFYHMVKTSHDIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDF 494

Query: 421 ASWNMMIGGYVKHG---LG-EKALEAFRMMLDEGYVPDEITFVVVLS 463
             ++ ++G    HG   LG E + + F M       P++  + V+LS
Sbjct: 495 DVYSTLLGACRIHGNIKLGHEISQKIFEME------PNDAGYYVLLS 535



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 161/313 (51%), Gaps = 3/313 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M +A+++F+SM E NVVSWNA+++GY++ G  ++ + LF  M+        +++ +++  
Sbjct: 173 MGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPA 232

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             + G ++ G  +H   IR G   DK +  +L+D+Y      D+A +VF  +   DV AW
Sbjct: 233 SLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAW 292

Query: 121 GAIITCLDQQGCCQEAAKIFN-LMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
             ++T          A K FN ++   ++K +  VL  ++ + + +G  + G  +HA+  
Sbjct: 293 TLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAI 352

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K  F ++  VG+A++ MY   G +    R F  +  +D V WNA+ +           + 
Sbjct: 353 KTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAID 412

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS-LVDMY 298
           +F QM   G  P+  TF+ +L ACS    V  G Q+  H +K S D  ++   + ++D+ 
Sbjct: 413 LFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQHYACVIDIL 472

Query: 299 DKSGCLEDAGVAF 311
            ++G L DA  +F
Sbjct: 473 GRAGQL-DAAYSF 484



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 108/209 (51%)

Query: 266 LSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
           L D+   +Q+HA  I   L  N  +  SL++ Y   G L DA   F     K++ ++T +
Sbjct: 34  LKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTIL 93

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH 385
           I+  A+      A+  FR+M +   K N  T++S L   + +  +   + +H   V+ G 
Sbjct: 94  ISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGF 153

Query: 386 LLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRM 445
             ++FV TALV MY+K G +  A  +F+  + R+  SWN ++ GY  HG  E+A++ F +
Sbjct: 154 EGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNL 213

Query: 446 MLDEGYVPDEITFVVVLSACSHMGLIEEG 474
           M  +G + D  T + ++ A   +G ++ G
Sbjct: 214 MRRKGLLVDFYTIMSLIPASLSVGCLQVG 242


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 203/661 (30%), Positives = 326/661 (49%), Gaps = 64/661 (9%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLKGFA 62
           A  +F  MP  +V SWN L++GY +S      +  F SM +  +   + F+L+  +K   
Sbjct: 90  AVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCG 149

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP------- 115
             G+      + AM  +     D  ++ +LVDM+ +CG  D A ++F RIK+P       
Sbjct: 150 ALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNS 209

Query: 116 ------------------------DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPN 151
                                   DVV+W  +++ L Q G  +EA  +   M+   V+ +
Sbjct: 210 MLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLD 269

Query: 152 QFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFE 211
               TS + A       R G+ +HA + +     D  V +ALV +Y ++G       VF 
Sbjct: 270 STTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFN 329

Query: 212 AIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGF 271
           ++  +++V+W  L S F  Y    + + +F QM  +    +      ++  C S  D+  
Sbjct: 330 SLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCL 389

Query: 272 GKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQ 331
           G+QLH+  +K       VV  SL+ MY K   L+ A   F  +  KD+ ++T++IT+Y+Q
Sbjct: 390 GRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQ 449

Query: 332 AGEAEMALKCFRKM-------------------------RL-------EGIKSNEFTLAS 359
            G    A + F  M                         R+       E ++ +  T  +
Sbjct: 450 VGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVT 509

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
              GC+ +     G  +    VK G ++D  V+ A++ MY+KCG I +A  VF    ++D
Sbjct: 510 LFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKD 569

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SWN MI GY +HG+G++A+E F  +L  G  PD I++V VLS CSH GL++EGK +F 
Sbjct: 570 IVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFD 629

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
            +K+ + I+P ++HF+CM+D+LGRAG  TE ++ I +  + P A VW  LL AC  HGN 
Sbjct: 630 MMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNN 689

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           EL E  A+ + EL+     +Y+  + I A  G+ +D + +R L+  +GIKK P  SW+EV
Sbjct: 690 ELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEV 749

Query: 600 D 600
           D
Sbjct: 750 D 750



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/390 (23%), Positives = 169/390 (43%), Gaps = 42/390 (10%)

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           + +  N +++ Y + GR+S    +F  +  +D  SWN L S +         L  F  M 
Sbjct: 70  NVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMH 129

Query: 246 LKGFK-PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
             G   PN  T    +K+C +L       QL A   K     +  V  +LVDM+ + G +
Sbjct: 130 RSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAV 189

Query: 305 EDA--------------------------GV-----AFDSLANKDLFAYTAIITSYAQAG 333
           + A                          GV      FDS+  +D+ ++  ++++ +Q+G
Sbjct: 190 DLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSG 249

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST 393
               AL     M+ +G++ +  T  S L  C+ +++L  G+ LH+  ++    +D +V++
Sbjct: 250 RVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVAS 309

Query: 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP 453
           ALV +YAK G   +A+ VF     R+  +W ++I G++++G   +++E F  M  E    
Sbjct: 310 ALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTL 369

Query: 454 DEITFVVVLSA-CSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIE- 511
           D+     ++S  CS M L    + H   +K   G    +     +I +  +       E 
Sbjct: 370 DQFALATLISGCCSRMDLCLGRQLHSLCLKS--GQIQAVVVSNSLISMYAKCDNLQSAEA 427

Query: 512 --NFITETKLTPNALVWENLLGACSWHGNI 539
              F+ E  +      W +++ A S  GN+
Sbjct: 428 IFRFMNEKDIVS----WTSMITAYSQVGNV 453



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 77/367 (20%), Positives = 142/367 (38%), Gaps = 72/367 (19%)

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA-------- 307
           F   L++C +   +   + LH   +   L     +  +L+  Y   G L DA        
Sbjct: 7   FADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDI 66

Query: 308 -------------GVA-----------FDSLANKDLFAYTAIITSYAQAGEAEMALKCFR 343
                        G A           F  +  +D+ ++  +++ Y Q+ +  ++L+ F 
Sbjct: 67  AHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFL 126

Query: 344 KMRLEGIK-SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC 402
            M   G    N FTLA  +  C  +   +    L ++  K     D  V+ ALV M+ +C
Sbjct: 127 SMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRC 186

Query: 403 GSIDDAEAVF----------KGSAL---------------------RDTASWNMMIGGYV 431
           G++D A  +F          + S L                     RD  SWNMM+    
Sbjct: 187 GAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALS 246

Query: 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPT 490
           + G   +AL+    M  +G   D  T+   L+AC+ +  +  GK+ H   I+ +  I P 
Sbjct: 247 QSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPY 306

Query: 491 IKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG----NIELDEKDA 546
           +   + ++++  ++G F E +          N + W  L+     +G    ++EL  +  
Sbjct: 307 VA--SALVELYAKSGCFKEAKGVFNSLH-DRNNVAWTVLISGFLQYGCFTESVELFNQMR 363

Query: 547 EKLLELE 553
            +L+ L+
Sbjct: 364 AELMTLD 370


>gi|302816284|ref|XP_002989821.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
 gi|300142387|gb|EFJ09088.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
          Length = 941

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 198/609 (32%), Positives = 320/609 (52%), Gaps = 18/609 (2%)

Query: 5   KRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANS 64
           K VF  M + +V+ W  ++ G +++G  ++ + +F  M     K ++ +  ++++   N 
Sbjct: 214 KSVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNL 273

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
             +K G+++ A  +         L+ SL+ +Y +CG+ D A  +   +   DVVAW A++
Sbjct: 274 DAVKEGEMIDARILESPFCSSTLLATSLISLYGQCGILDRAKGLLEHMYQRDVVAWNAMV 333

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF- 183
           T   Q G   EA  +   M       N+    S++ A         G  IHA +   G  
Sbjct: 334 TACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVLEACANLEALSQGREIHARVLLCGLL 393

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALF------SRFQDYESPDQG 237
           + +  VGN++++MY + G+      VFEA+  +D VSWNA+       S+FQD       
Sbjct: 394 QREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDDVSWNAVINASVGNSKFQD------A 447

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGTSLVD 296
           L +F+ M L+G + N  T + +L+AC  L D+   +Q+HA        GN   VG S+V+
Sbjct: 448 LELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGGFGGNSTAVGNSVVN 507

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQA--GEAEMALKCFRKMRLEGIKSNE 354
           MY + G L DA  AFDSL  K L A++ I+ +YAQ+  G    A K F++M  EGIK  E
Sbjct: 508 MYARCGSLLDAKKAFDSLEEKGLVAWSIILAAYAQSKDGPGRRAFKFFQEMEAEGIKPGE 567

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHL-LDMFVSTALVAMYAKCGSIDDAEAVFK 413
            T  S L+ C+ +ATL +GR +H  A  +G +   + +   ++ MY KCGS  DA+ VF 
Sbjct: 568 VTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVFD 627

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
               +   SWN +I  Y  +G   +AL + + ML +G+ PD  T V +L   SH GL+E 
Sbjct: 628 QMPEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSVSILYGLSHAGLLER 687

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK-LTPNALVWENLLGA 532
           G +HF S  + +G+ P+     C++D+L R G     E  I  +     + + W  LL A
Sbjct: 688 GVEHFRSSIQDHGLEPSSGQLKCLVDLLARKGFLDAAEELILASPACQADTIAWMTLLAA 747

Query: 533 CSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEP 592
           C  +G+ +   + AE++ ELEP+   ++V  +++ A+ GRW+D S +R ++    +KKEP
Sbjct: 748 CKSYGDPQRGIRCAERVFELEPQHSGSFVVLANLYASVGRWSDASRIRKMMERMSVKKEP 807

Query: 593 SCSWIEVDG 601
            CSWIE+ G
Sbjct: 808 GCSWIELSG 816



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 136/460 (29%), Positives = 228/460 (49%), Gaps = 1/460 (0%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           VF  +   NV SW  ++  Y+++G  ++ + LF  M+    +  K      L   A SG 
Sbjct: 14  VFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVVFVIALDACAASGE 73

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +  G+ +H+  +  G   +  +S SLV+MY KC     A KVF  +   DVV+W A++  
Sbjct: 74  LDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLRDVVSWTAMLAV 133

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             Q GC  +A +  + M    VKPNQ    ++V    +      G  IH  I   G E D
Sbjct: 134 YAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRKIHHRIINEGLEPD 193

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
            ++GNALV MY   G       VF  +     + W  + +        ++GL +F +M L
Sbjct: 194 GILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLLVFRKMDL 253

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           +G K N  T++ +++ C +L  V  G+ + A  ++     + ++ TSL+ +Y + G L+ 
Sbjct: 254 EGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLATSLISLYGQCGILDR 313

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A    + +  +D+ A+ A++T+ AQ G+   A+   R+M +EG  +N+ T  S L  C+ 
Sbjct: 314 AKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVLEACAN 373

Query: 367 VATLANGRLLHSIAVKTGHL-LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
           +  L+ GR +H+  +  G L  ++ V  +++ MY KCG  + A +VF+    +D  SWN 
Sbjct: 374 LEALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDDVSWNA 433

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC 465
           +I   V +   + ALE F  M  EG   +E T + +L AC
Sbjct: 434 VINASVGNSKFQDALELFHGMELEGLRSNEFTLLSLLEAC 473



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 126/480 (26%), Positives = 238/480 (49%), Gaps = 8/480 (1%)

Query: 95  MYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFV 154
           MY KC    +AL VF  I   +V +W  ++    Q G  +EA ++F  M+    +P++ V
Sbjct: 1   MYGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVV 60

Query: 155 LTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA 214
               + A   +G+   G  IH+ +   G  S+ ++ N+LV+MY +   V    +VF+ + 
Sbjct: 61  FVIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGML 120

Query: 215 HQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ 274
            +D VSW A+ + +       Q L    +M  +G KPN  TF+ I+  C+ L  +  G++
Sbjct: 121 LRDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRK 180

Query: 275 LHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGE 334
           +H   I   L+ + ++G +LV MY   G  +D    F  +    +  +T +I   +Q G+
Sbjct: 181 IHHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQ 240

Query: 335 AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA 394
            E  L  FRKM LEG+K+NE T  S +  C  +  +  G ++ +  +++       ++T+
Sbjct: 241 YEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLATS 300

Query: 395 LVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD 454
           L+++Y +CG +D A+ + +    RD  +WN M+    ++G   +A+   R M  EG+  +
Sbjct: 301 LISLYGQCGILDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGAN 360

Query: 455 EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFI 514
           ++T++ VL AC+++  + +G++  + +     +   +     +I + G+ G+ TE    +
Sbjct: 361 KVTYLSVLEACANLEALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQ-TEAAMSV 419

Query: 515 TETKLTPNALVWENLLGACSWHGNIELDEKDAEKL---LELEPKMESNYVFPSDISATQG 571
            E     + + W  ++ A    GN +   +DA +L   +ELE    + +   S + A  G
Sbjct: 420 FEAMPRKDDVSWNAVINASV--GNSKF--QDALELFHGMELEGLRSNEFTLLSLLEACGG 475



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 125/456 (27%), Positives = 224/456 (49%), Gaps = 22/456 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLK 59
           ++ AK + + M + +VV+WNA++   A++GD  + +HL   M DME    +K +  +VL+
Sbjct: 311 LDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRM-DMEGFGANKVTYLSVLE 369

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKF-LSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
             AN   +  G+ +HA  +  G    +  +  S++ MY KCG  + A+ VF  +   D V
Sbjct: 370 ACANLEALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDDV 429

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +W A+I         Q+A ++F+ M    ++ N+F L SL+ A     D +    IHA  
Sbjct: 430 SWNAVINASVGNSKFQDALELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARA 489

Query: 179 CKYGFESD-TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF-QDYESP-D 235
              GF  + T VGN++V+MY   G +    + F+++  +  V+W+ + + + Q  + P  
Sbjct: 490 AAGGFGGNSTAVGNSVVNMYARCGSLLDAKKAFDSLEEKGLVAWSIILAAYAQSKDGPGR 549

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS-LDGNHVVGTSL 294
           +  + F +M  +G KP   TF+  L AC++++ +  G+ +H        ++ + V+G ++
Sbjct: 550 RAFKFFQEMEAEGIKPGEVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTI 609

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           ++MY K G   DA + FD +  K L ++ ++I +YA  G A  AL   ++M L+G   + 
Sbjct: 610 INMYGKCGSPSDAKLVFDQMPEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDS 669

Query: 355 FTLASCLNGCSPVATLANGRLL-------HSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
            T  S L G S    L  G          H +   +G L        LV + A+ G +D 
Sbjct: 670 GTSVSILYGLSHAGLLERGVEHFRSSIQDHGLEPSSGQL------KCLVDLLARKGFLDA 723

Query: 408 AEAVFKGSAL--RDTASWNMMIGGYVKHGLGEKALE 441
           AE +   S     DT +W  ++     +G  ++ + 
Sbjct: 724 AEELILASPACQADTIAWMTLLAACKSYGDPQRGIR 759


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 167/462 (36%), Positives = 271/462 (58%), Gaps = 1/462 (0%)

Query: 139 IFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYM 198
           + +L+   S++P++ +  +L++  T+ G  + G+ +H  +    F+ D ++ N+L+ MY 
Sbjct: 61  VLDLIDCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYA 120

Query: 199 ENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIV 258
             G +    R+F+ + H+D VSW ++ + +   +     L +F +ML  G +PN  T   
Sbjct: 121 RCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSS 180

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKD 318
           ++K C  ++    G+Q+HA   K+    N  VG+SLVDMY + G L +A + FD L  K+
Sbjct: 181 LVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKN 240

Query: 319 LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHS 378
             ++ A+I  YA+ GE E AL  F +M+ EG +  EFT ++ L+ CS +  L  G+ LH+
Sbjct: 241 EVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHA 300

Query: 379 IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEK 438
             +K+   L  +V   L+ MYAK GSI DAE VF      D  S N M+ GY +HGLG++
Sbjct: 301 HLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKE 360

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMI 498
           A + F  M+  G  P++ITF+ VL+ACSH  L++EGK +F  ++K Y I P + H+A ++
Sbjct: 361 AAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRK-YNIEPKVSHYATIV 419

Query: 499 DILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMES 558
           D+LGRAG   + ++FI E  + P   +W  LLGA   H N E+    A+++ EL+P    
Sbjct: 420 DLLGRAGLLDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPG 479

Query: 559 NYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
            +   ++I A+ GRW D + VR ++   G+KKEP+CSW+EV+
Sbjct: 480 THTLLANIYASAGRWEDVAKVRKIMKDSGVKKEPACSWVEVE 521



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/382 (30%), Positives = 193/382 (50%), Gaps = 5/382 (1%)

Query: 55  STVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
           +T+LK     G +K G++VH   +      D  +  SL+ MY++CG  + A ++F  +  
Sbjct: 78  NTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPH 137

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
            D+V+W ++IT   Q     +A  +F  M     +PN+F L+SLV+         CG  I
Sbjct: 138 RDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQI 197

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           HA   KYG  S+  VG++LV MY   G +     VF+ +  ++ VSWNAL + +      
Sbjct: 198 HACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEG 257

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
           ++ L +F +M  +G++P   T+  +L +CSS+  +  GK LHAH +K S      VG +L
Sbjct: 258 EEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTL 317

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           + MY KSG + DA   FD L   D+ +  +++  YAQ G  + A + F +M   GI+ N+
Sbjct: 318 LHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPND 377

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS--TALVAMYAKCGSIDDAEAVF 412
            T  S L  CS    L  G+  H   +   + ++  VS    +V +  + G +D A++  
Sbjct: 378 ITFLSVLTACSHARLLDEGK--HYFGLMRKYNIEPKVSHYATIVDLLGRAGLLDQAKSFI 435

Query: 413 KGSALRDT-ASWNMMIGGYVKH 433
           +   +  T A W  ++G    H
Sbjct: 436 EEMPIEPTVAIWGALLGASKMH 457



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/239 (36%), Positives = 137/239 (57%)

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
           GL +   +     +P+   +  +LK C+ L  +  GK +H H +  +   + V+  SL+ 
Sbjct: 58  GLHVLDLIDCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLF 117

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           MY + G LE A   FD + ++D+ ++T++IT YAQ   A  AL  F +M  +G + NEFT
Sbjct: 118 MYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFT 177

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
           L+S +  C  +A+   GR +H+   K G   ++FV ++LV MYA+CG + +A  VF    
Sbjct: 178 LSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLG 237

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
            ++  SWN +I GY + G GE+AL  F  M  EGY P E T+  +LS+CS MG +E+GK
Sbjct: 238 CKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGK 296



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 161/307 (52%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+R+F  MP  ++VSW +++ GYA++      + LF  M     + ++F+LS+++K 
Sbjct: 125 LEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKC 184

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                    G+ +HA   + GC  + F+  SLVDMY++CG    A+ VF ++   + V+W
Sbjct: 185 CGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSW 244

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    ++G  +EA  +F  M+    +P +F  ++L+ + +  G    G+ +HA + K
Sbjct: 245 NALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMK 304

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              +    VGN L+ MY ++G +    +VF+ +   D VS N++   +  +    +  + 
Sbjct: 305 SSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQ 364

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M+  G +PN  TF+ +L ACS    +  GK       K++++       ++VD+  +
Sbjct: 365 FDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRKYNIEPKVSHYATIVDLLGR 424

Query: 301 SGCLEDA 307
           +G L+ A
Sbjct: 425 AGLLDQA 431


>gi|356532311|ref|XP_003534717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Glycine max]
          Length = 755

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 189/600 (31%), Positives = 307/600 (51%), Gaps = 3/600 (0%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           ++A++VF  MPE NVV W  ++  Y+ +G   +   LF  M+    + S  ++ ++L G 
Sbjct: 113 DVARKVFDYMPERNVVPWTTIIGCYSRTGRVPEAFSLFDEMRRQGIQPSSVTVLSLLFGV 172

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           +   ++   Q +H  AI  G   D  LS S++++Y KCG  + + K+F  +   D+V+W 
Sbjct: 173 SELAHV---QCLHGCAILYGFMSDINLSNSMLNVYGKCGNIEYSRKLFDYMDHRDLVSWN 229

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           ++I+   Q G   E   +   MR    +       S++      G+ + G  +H  I + 
Sbjct: 230 SLISAYAQIGNICEVLLLLKTMRLQGFEAGPQTFGSVLSVAASRGELKLGRCLHGQILRA 289

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           GF  D  V  +L+ +Y++ G++    R+FE  + +D V W A+ S      S D+ L +F
Sbjct: 290 GFYLDAHVETSLIVVYLKGGKIDIAFRMFERSSDKDVVLWTAMISGLVQNGSADKALAVF 349

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            QML  G KP+  T   ++ AC+ L     G  +  + ++  L  +     SLV MY K 
Sbjct: 350 RQMLKFGVKPSTATMASVITACAQLGSYNLGTSILGYILRQELPLDVATQNSLVTMYAKC 409

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G L+ + + FD +  +DL ++ A++T YAQ G    AL  F +MR +    +  T+ S L
Sbjct: 410 GHLDQSSIVFDMMNRRDLVSWNAMVTGYAQNGYVCEALFLFNEMRSDNQTPDSITIVSLL 469

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
            GC+    L  G+ +HS  ++ G    + V T+LV MY KCG +D A+  F      D  
Sbjct: 470 QGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCGDLDTAQRCFNQMPSHDLV 529

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SW+ +I GY  HG GE AL  +   L+ G  P+ + F+ VLS+CSH GL+E+G   + S+
Sbjct: 530 SWSAIIVGYGYHGKGEAALRFYSKFLESGMKPNHVIFLSVLSSCSHNGLVEQGLNIYESM 589

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
            K +GI P ++H AC++D+L RAG+  E  N   +    P   V   +L AC  +GN EL
Sbjct: 590 TKDFGIAPDLEHHACVVDLLSRAGRVEEAYNVYKKKFPDPVLDVLGIILDACRANGNNEL 649

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
            +  A  +L L P    N+V  +   A+  +W +       + S G+KK P  S+I++ G
Sbjct: 650 GDTIANDILMLRPMDAGNFVQLAHCYASINKWEEVGEAWTYMRSLGLKKIPGWSFIDIHG 709



 Score =  249 bits (635), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 159/558 (28%), Positives = 275/558 (49%), Gaps = 8/558 (1%)

Query: 5   KRVFKSMPELNVV-SWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           KR   S+P      S NA +N ++  G   +V+  + SM         ++  ++LK  + 
Sbjct: 14  KRCVVSLPHPATTNSVNATINHHSTQGAHHQVLATYASMLKTHVPSDAYTFPSLLKACSF 73

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G  +H   +  G +LD +++ SL++ Y+K G AD A KVF  + + +VV W  I
Sbjct: 74  LNLFSLGLTLHQRILVSGLSLDAYIASSLINFYAKFGFADVARKVFDYMPERNVVPWTTI 133

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I C  + G   EA  +F+ MR   ++P+   + SL+   +E    +C   +H     YGF
Sbjct: 134 IGCYSRTGRVPEAFSLFDEMRRQGIQPSSVTVLSLLFGVSELAHVQC---LHGCAILYGF 190

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            SD  + N+++++Y + G + Y  ++F+ + H+D VSWN+L S +    +  + L +   
Sbjct: 191 MSDINLSNSMLNVYGKCGNIEYSRKLFDYMDHRDLVSWNSLISAYAQIGNICEVLLLLKT 250

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M L+GF+    TF  +L   +S  ++  G+ LH   ++     +  V TSL+ +Y K G 
Sbjct: 251 MRLQGFEAGPQTFGSVLSVAASRGELKLGRCLHGQILRAGFYLDAHVETSLIVVYLKGGK 310

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++ A   F+  ++KD+  +TA+I+   Q G A+ AL  FR+M   G+K +  T+AS +  
Sbjct: 311 IDIAFRMFERSSDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKPSTATMASVITA 370

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ + +   G  +    ++    LD+    +LV MYAKCG +D +  VF     RD  SW
Sbjct: 371 CAQLGSYNLGTSILGYILRQELPLDVATQNSLVTMYAKCGHLDQSSIVFDMMNRRDLVSW 430

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N M+ GY ++G   +AL  F  M  +   PD IT V +L  C+  G +  GK   S + +
Sbjct: 431 NAMVTGYAQNGYVCEALFLFNEMRSDNQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIR 490

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
             G+ P I     ++D+  + G     +    +   + + + W  ++    +HG  E   
Sbjct: 491 -NGLRPCILVDTSLVDMYCKCGDLDTAQRCFNQMP-SHDLVSWSAIIVGYGYHGKGEAAL 548

Query: 544 KDAEKLLELEPKMESNYV 561
           +   K   LE  M+ N+V
Sbjct: 549 RFYSKF--LESGMKPNHV 564



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 126/414 (30%), Positives = 214/414 (51%), Gaps = 1/414 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E ++++F  M   ++VSWN+L++ YA+ G+  +V+ L  +M+    +    +  +VL  
Sbjct: 210 IEYSRKLFDYMDHRDLVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEAGPQTFGSVLSV 269

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+ G +K G+ +H   +R G  LD  +  SL+ +Y K G  D A ++F R  D DVV W
Sbjct: 270 AASRGELKLGRCLHGQILRAGFYLDAHVETSLIVVYLKGGKIDIAFRMFERSSDKDVVLW 329

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I+ L Q G   +A  +F  M +  VKP+   + S++ A  + G    G SI   I +
Sbjct: 330 TAMISGLVQNGSADKALAVFRQMLKFGVKPSTATMASVITACAQLGSYNLGTSILGYILR 389

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
                D    N+LV+MY + G +   S VF+ +  +D VSWNA+ + +       + L +
Sbjct: 390 QELPLDVATQNSLVTMYAKCGHLDQSSIVFDMMNRRDLVSWNAMVTGYAQNGYVCEALFL 449

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M      P+  T + +L+ C+S   +  GK +H+  I++ L    +V TSLVDMY K
Sbjct: 450 FNEMRSDNQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCK 509

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L+ A   F+ + + DL +++AII  Y   G+ E AL+ + K    G+K N     S 
Sbjct: 510 CGDLDTAQRCFNQMPSHDLVSWSAIIVGYGYHGKGEAALRFYSKFLESGMKPNHVIFLSV 569

Query: 361 LNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
           L+ CS    +  G  +  S+    G   D+     +V + ++ G +++A  V+K
Sbjct: 570 LSSCSHNGLVEQGLNIYESMTKDFGIAPDLEHHACVVDLLSRAGRVEEAYNVYK 623


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 183/600 (30%), Positives = 320/600 (53%), Gaps = 1/600 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A+ +F SM + +VV+W  L+ GYA+     +  +LF  M          +L+T+L G
Sbjct: 89  LSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSG 148

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           F     +     VH   +++G      +  SL+D Y K      A  +F  + + D V +
Sbjct: 149 FTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTF 208

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A++T   ++G   +A  +F  M++   +P++F   +++ A  +  D   G+ +H+ + K
Sbjct: 209 NALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVK 268

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             F  +  V NAL+  Y ++ R+    ++F  +   D +S+N L +        ++ L +
Sbjct: 269 CNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLEL 328

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F ++    F      F  +L   ++  ++  G+Q+H+  I        +VG SLVDMY K
Sbjct: 329 FRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAK 388

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
                +A   F  LA++    +TA+I+ Y Q G  E  LK F +M    I ++  T AS 
Sbjct: 389 CDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASI 448

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L  C+ +A+L  G+ LHS  +++G L ++F  +ALV MYAKCGSI +A  +F+   +R++
Sbjct: 449 LRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVRNS 508

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SWN +I  Y ++G G  AL +F  M+  G  P+ ++F+ +L ACSH GL+EEG ++F+S
Sbjct: 509 VSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQYFNS 568

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + ++Y + P  +H+A M+D+L R+G+F E E  +      P+ ++W ++L +C  H N E
Sbjct: 569 MTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRIHKNQE 628

Query: 541 LDEKDAEKLLELEP-KMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           L  K A++L  ++  +  + YV  S+I A  G W+    V+  L  +GI+K P+ SW+E+
Sbjct: 629 LAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIRKVPAYSWVEI 688



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 118/443 (26%), Positives = 208/443 (46%), Gaps = 2/443 (0%)

Query: 96  YSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVL 155
           Y K G    A  +F  +    VV W  +I    Q     EA  +F  M    + P+   L
Sbjct: 83  YLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITL 142

Query: 156 TSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH 215
            +L+   TE         +H  + K G++S  +V N+L+  Y +   +     +F+ +A 
Sbjct: 143 ATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAE 202

Query: 216 QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL 275
           +D+V++NAL + +         + +F++M   GF+P+  TF  +L A   + D+ FG+Q+
Sbjct: 203 KDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQV 262

Query: 276 HAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEA 335
           H+  +K +   N  V  +L+D Y K   + +A   F  +   D  +Y  +IT  A  G  
Sbjct: 263 HSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRV 322

Query: 336 EMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTAL 395
           E +L+ FR+++       +F  A+ L+  +    L  GR +HS A+ T  + ++ V  +L
Sbjct: 323 EESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSL 382

Query: 396 VAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE 455
           V MYAKC    +A  +F   A + +  W  +I GYV+ GL E  L+ F  M       D 
Sbjct: 383 VDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADS 442

Query: 456 ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFIT 515
            T+  +L AC+++  +  GK+  S I +  G    +   + ++D+  + G   E      
Sbjct: 443 ATYASILRACANLASLTLGKQLHSRIIR-SGCLSNVFSGSALVDMYAKCGSIKEALQMFQ 501

Query: 516 ETKLTPNALVWENLLGACSWHGN 538
           E  +  N++ W  L+ A + +G+
Sbjct: 502 EMPVR-NSVSWNALISAYAQNGD 523



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 152/324 (46%), Gaps = 1/324 (0%)

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           + +  N ++  Y+++G +S    +F+++  +  V+W  L   +  +    +   +F  M 
Sbjct: 72  NVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMC 131

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
             G  P+  T   +L   +    V    Q+H H +K   D   +V  SL+D Y K+  L 
Sbjct: 132 RHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLG 191

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
            A   F  +A KD   + A++T Y++ G    A+  F KM+  G + +EFT A+ L    
Sbjct: 192 LACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGI 251

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
            +  +  G+ +HS  VK   + ++FV+ AL+  Y+K   I +A  +F      D  S+N+
Sbjct: 252 QMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNV 311

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIY 485
           +I     +G  E++LE FR +    +   +  F  +LS  ++   +E G++  S      
Sbjct: 312 LITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTD 371

Query: 486 GITPTIKHFACMIDILGRAGKFTE 509
            I+  +   + ++D+  +  KF E
Sbjct: 372 AISEVLVGNS-LVDMYAKCDKFGE 394



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 135/298 (45%), Gaps = 8/298 (2%)

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM-YDKSG 302
           M+  GF PN C F   ++      D+G  ++L        +   +V+ T+ + M Y KSG
Sbjct: 33  MIKTGFDPNTCRFNFQVQTHLQRGDLGAARKLF-----DEMPHKNVISTNTMIMGYLKSG 87

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            L  A   FDS+  + +  +T +I  YAQ      A   F  M   G+  +  TLA+ L+
Sbjct: 88  NLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLS 147

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
           G +   ++     +H   VK G+   + V  +L+  Y K  S+  A  +FK  A +D  +
Sbjct: 148 GFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVT 207

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           +N ++ GY K G    A+  F  M D G+ P E TF  VL+A   M  IE G++  S + 
Sbjct: 208 FNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVV 267

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           K   +       A ++D   +  +  E      E     + + +  L+  C+W+G +E
Sbjct: 268 KCNFVWNVFVANA-LLDFYSKHDRIVEARKLFYEMPEV-DGISYNVLITCCAWNGRVE 323


>gi|297605857|ref|NP_001057684.2| Os06g0493800 [Oryza sativa Japonica Group]
 gi|255677066|dbj|BAF19598.2| Os06g0493800 [Oryza sativa Japonica Group]
          Length = 721

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 194/603 (32%), Positives = 325/603 (53%), Gaps = 6/603 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEK-KFSKFSLSTVLKGF 61
           A+ VF  MP  NVVSW+ L+   +  G     + LF  M +  E+ + + F+++ ++ G 
Sbjct: 56  ARGVFDEMPRRNVVSWSVLIAASSRLGVLGDALSLFAGMLRGGERDRPNSFTVAALVAGC 115

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           A +    AG+ VHA A++LG   D+ ++ +LVDMY+KCG   ++ + F       V++W 
Sbjct: 116 ARAKDAVAGEQVHASAVKLGVDEDESVAGTLVDMYAKCGRVGSSWRAFVLTPQRSVLSWT 175

Query: 122 AIITCLDQQGCC---QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           ++I CL   G       A  +F  M    V P     + +++          G+ +H  +
Sbjct: 176 SMIACLVNHGDSGYRDTAIVLFKKMLVLKVWPTNATFSCILKVFDVPELLPSGKQVHGCL 235

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K G E D  +G AL++MY   G +   +R+   I H D+ S  +L + +       + +
Sbjct: 236 VKMGTEVDPALGTALLAMYGRCGGMDEITRLACRIRH-DAFSRTSLLTAYARNGCNMEAV 294

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           R+F  ML+     +      +L+ CSSL  +   K++H + +K+    + ++  ++V +Y
Sbjct: 295 RVFRDMLMGHMPIDQSAITSLLQVCSSLGQLRVVKEIHCYALKNFFRLDTLLLNAIVTVY 354

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G +  + + F++L NKD  ++TA++T Y Q   ++ AL  FR+M  +G++S+ F + 
Sbjct: 355 GKCGDIASSEIVFNTLENKDTISWTALLTCYVQNDLSQEALFFFREMVRKGLESSIFCIT 414

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L  CS  ++L+ G  +HS  VK G   D  V  ALV MYAKCG +  A  +F     R
Sbjct: 415 SVLRACSATSSLSCGWQIHSRVVKLGVDDDTSVENALVTMYAKCGVVQVALKIFNSMRNR 474

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
              SWN +I  + +HG    A++ F MM +E   PD+ TFV +LS+CS MGL+ EG ++F
Sbjct: 475 GIISWNALITSFSQHGNEVAAIQLFDMMQEEMVCPDDYTFVGLLSSCSRMGLVAEGCEYF 534

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
             +K  Y + P ++H+ CM+D+  RAG+F++   FI      P+ LVWE LL +C  HGN
Sbjct: 535 KQMKTKYNLEPKMEHYTCMVDLFARAGRFSDAMKFIDAMPCQPDQLVWEALLASCRVHGN 594

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           ++L    A+K+LE++P+  S Y+  S I A+   W++ +  R LL  Q ++K+   S ++
Sbjct: 595 LDLGRMAAKKILEIKPEDPSPYIILSSIHASIDMWDEKARNRTLLDFQQLRKDVGSSQLD 654

Query: 599 VDG 601
             G
Sbjct: 655 SQG 657



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 136/502 (27%), Positives = 227/502 (45%), Gaps = 15/502 (2%)

Query: 71  QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
           + VH  A++LGC    +L  +L+  Y   G   +A  VF  +   +VV+W  +I    + 
Sbjct: 22  RAVHGAAVKLGCLASTYLCNNLLLSYQARGHLADARGVFDEMPRRNVVSWSVLIAASSRL 81

Query: 131 GCCQEAAKIFNLMRESSV--KPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTL 188
           G   +A  +F  M       +PN F + +LV       D   GE +HA   K G + D  
Sbjct: 82  GVLGDALSLFAGMLRGGERDRPNSFTVAALVAGCARAKDAVAGEQVHASAVKLGVDEDES 141

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS---RFQDYESPDQGLRIFYQML 245
           V   LV MY + GRV    R F     +  +SW ++ +      D    D  + +F +ML
Sbjct: 142 VAGTLVDMYAKCGRVGSSWRAFVLTPQRSVLSWTSMIACLVNHGDSGYRDTAIVLFKKML 201

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
           +    P   TF  ILK       +  GKQ+H   +K   + +  +GT+L+ MY + G ++
Sbjct: 202 VLKVWPTNATFSCILKVFDVPELLPSGKQVHGCLVKMGTEVDPALGTALLAMYGRCGGMD 261

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
           +           D F+ T+++T+YA+ G    A++ FR M +  +  ++  + S L  CS
Sbjct: 262 EI-TRLACRIRHDAFSRTSLLTAYARNGCNMEAVRVFRDMLMGHMPIDQSAITSLLQVCS 320

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
            +  L   + +H  A+K    LD  +  A+V +Y KCG I  +E VF     +DT SW  
Sbjct: 321 SLGQLRVVKEIHCYALKNFFRLDTLLLNAIVTVYGKCGDIASSEIVFNTLENKDTISWTA 380

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIY 485
           ++  YV++ L ++AL  FR M+ +G          VL ACS    +  G +  S + K+ 
Sbjct: 381 LLTCYVQNDLSQEALFFFREMVRKGLESSIFCITSVLRACSATSSLSCGWQIHSRVVKL- 439

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKD 545
           G+         ++ +  + G   ++   I  +      + W  L+ + S HGN    E  
Sbjct: 440 GVDDDTSVENALVTMYAKCG-VVQVALKIFNSMRNRGIISWNALITSFSQHGN----EVA 494

Query: 546 AEKLLELEPKMESNYVFPSDIS 567
           A +L ++   M+   V P D +
Sbjct: 495 AIQLFDM---MQEEMVCPDDYT 513



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 35/175 (20%), Positives = 78/175 (44%), Gaps = 9/175 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +++A ++F SM    ++SWNAL+  +++ G+    + LF  M++       ++   +L  
Sbjct: 461 VQVALKIFNSMRNRGIISWNALITSFSQHGNEVAAIQLFDMMQEEMVCPDDYTFVGLLSS 520

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            +  G +  G +    M  +            +VD++++ G   +A+K    +   PD +
Sbjct: 521 CSRMGLVAEGCEYFKQMKTKYNLEPKMEHYTCMVDLFARAGRFSDAMKFIDAMPCQPDQL 580

Query: 119 AWGAIITCLDQQGCCQ----EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
            W A++      G        A KI  +  E    P+ +++ S + A+ +  D++
Sbjct: 581 VWEALLASCRVHGNLDLGRMAAKKILEIKPED---PSPYIILSSIHASIDMWDEK 632


>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Vitis vinifera]
          Length = 732

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 182/598 (30%), Positives = 311/598 (52%), Gaps = 3/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF +M + NVV W  ++  Y  +G+      ++  M+    + S  ++  +L G   
Sbjct: 102 ARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLE 161

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
             ++   Q +HA  I+ G   D  L+ S++++Y KCG  ++A  +F  +   DV++W ++
Sbjct: 162 LVHL---QCLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSL 218

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           ++   Q G  +E  ++   M+   ++P+Q    SLV A         G+ +H  I + G 
Sbjct: 219 VSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGL 278

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E D+ +  +L+ MY++ G V+   R+FE + H+D +SW A+ S     +  D  + +F +
Sbjct: 279 EQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRR 338

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           ML     P+  T   +L AC+ L     G  +H + ++  +  +     SLV MY K G 
Sbjct: 339 MLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGH 398

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           LE +   FD ++ +D+ ++ AI++ +AQ G    AL  F +MR    + +  T+ S L  
Sbjct: 399 LEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQA 458

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +  L  G+ +H+   K+     + + TALV MY+KCG +  A+  F     +D  SW
Sbjct: 459 CASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSW 518

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           + +I GY  HG GE AL  +   L  G  P+ + ++ +LSACSH GL+++G   F S+ K
Sbjct: 519 SSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTK 578

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            +GI P ++H AC++D+L RAG+  E  +F       P+  V   LL AC   GN+EL +
Sbjct: 579 DFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDACRTTGNVELGD 638

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
             A +++ L+P    NYV  +   A+  RW+    V   + S  +KK P  S+IE+ G
Sbjct: 639 IVAREIVILKPANAGNYVQLAHSYASMKRWDGVGEVWTQMKSLHLKKLPGWSFIELHG 696



 Score =  238 bits (608), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 147/524 (28%), Positives = 265/524 (50%), Gaps = 7/524 (1%)

Query: 18  SWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMA 77
           S+NA++N  + +G    V+  + SM   +      +  +++K   +      G   H   
Sbjct: 15  SYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRV 74

Query: 78  IRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAA 137
           I  G + D +++ SL++ YSK G   +A KVF  + D +VV W  +I C  + G    A 
Sbjct: 75  IVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAF 134

Query: 138 KIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMY 197
            ++N+MR   ++P+   +  L+    E    +C   +HA + +YGF SD  + N+++++Y
Sbjct: 135 SMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQC---LHACVIQYGFGSDVALANSMLNVY 191

Query: 198 MENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFI 257
            + GRV     +FE +  +D +SWN+L S +    +  + L++  +M   G +P+  TF 
Sbjct: 192 CKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFG 251

Query: 258 VILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK 317
            ++ A +  S +G GK +H H ++  L+ +  + TSL+ MY K G +  A   F+ + +K
Sbjct: 252 SLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHK 311

Query: 318 DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLH 377
           D+ ++TA+I+   Q   A+MA+  FR+M    +  +  T+AS L  C+ + +   G  +H
Sbjct: 312 DVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVH 371

Query: 378 SIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGE 437
              ++    LD+    +LV MYAKCG ++ + +VF   + RD  SWN ++ G+ ++G   
Sbjct: 372 GYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLC 431

Query: 438 KALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACM 497
           KAL  F  M      PD IT V +L AC+ +G + +GK   + + K   + P I     +
Sbjct: 432 KALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTK-SCLGPCILIDTAL 490

Query: 498 IDILGRAGKFTEIENFITETKLTPNALV-WENLLGACSWHGNIE 540
           +D+  + G     +      ++    LV W +++     HG  E
Sbjct: 491 VDMYSKCGDLGSAQKCF--DRMPQQDLVSWSSIIAGYGSHGKGE 532



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 212/414 (51%), Gaps = 1/414 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ +F+ M   +V+SWN+L++GYA+ G+ ++V+ L   MK    +  + +  +++  
Sbjct: 197 VEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSA 256

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    +  G++VH   +R G   D  +  SL+ MY KCG  ++A ++F  +   DV++W
Sbjct: 257 AAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISW 316

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I+ L Q  C   A  +F  M +S V P+   + S++ A  E G    G S+H  I +
Sbjct: 317 TAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILR 376

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              + D    N+LV+MY + G +     VF+ ++ +D VSWNA+ S         + L +
Sbjct: 377 QRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLL 436

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M     +P+  T + +L+AC+S+  +  GK +H    K  L    ++ T+LVDMY K
Sbjct: 437 FNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSK 496

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L  A   FD +  +DL ++++II  Y   G+ E AL+ +      GI+ N     S 
Sbjct: 497 CGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSI 556

Query: 361 LNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
           L+ CS    +  G    HS+    G    +     +V + ++ G +++A + +K
Sbjct: 557 LSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYK 610



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 175/356 (49%), Gaps = 3/356 (0%)

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES 173
           +P   ++ AII  L   G   +    ++ M  +   P+     SLV+A T       G S
Sbjct: 10  NPATKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLS 69

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
            H  +   G+ SD+ +  +L++ Y + G      +VF+ +  ++ V W  +   +     
Sbjct: 70  FHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGE 129

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
            D    ++  M  +G +P+  T + +L     L  +   + LHA  I++    +  +  S
Sbjct: 130 HDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHL---QCLHACVIQYGFGSDVALANS 186

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           ++++Y K G +EDA   F+ +  +D+ ++ ++++ YAQ G     L+   +M+ +GI+ +
Sbjct: 187 MLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPD 246

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
           + T  S ++  +  + L  G+++H   ++ G   D  + T+L+ MY KCG+++ A  +F+
Sbjct: 247 QQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFE 306

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
           G   +D  SW  MI G V++   + A+  FR ML    +P   T   VL+AC+ +G
Sbjct: 307 GMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELG 362



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 138/269 (51%), Gaps = 3/269 (1%)

Query: 207 SRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266
           SR   +  +  + S+NA+ +R     +    L  +  ML     P+  TF  ++KAC+SL
Sbjct: 2   SRAKPSFLNPATKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSL 61

Query: 267 SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
                G   H   I      +  + TSL++ Y K G  + A   FD++ ++++  +T +I
Sbjct: 62  DLFSHGLSFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMI 121

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL 386
             Y +AGE ++A   +  MR +GI+ +  T+   L+G   V  L + + LH+  ++ G  
Sbjct: 122 GCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSG---VLELVHLQCLHACVIQYGFG 178

Query: 387 LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM 446
            D+ ++ +++ +Y KCG ++DA+A+F+    RD  SWN ++ GY + G   + L+    M
Sbjct: 179 SDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRM 238

Query: 447 LDEGYVPDEITFVVVLSACSHMGLIEEGK 475
             +G  PD+ TF  ++SA +    +  GK
Sbjct: 239 KTDGIEPDQQTFGSLVSAAAMQSKLGVGK 267


>gi|125597302|gb|EAZ37082.1| hypothetical protein OsJ_21424 [Oryza sativa Japonica Group]
          Length = 671

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 194/603 (32%), Positives = 325/603 (53%), Gaps = 6/603 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEK-KFSKFSLSTVLKGF 61
           A+ VF  MP  NVVSW+ L+   +  G     + LF  M +  E+ + + F+++ ++ G 
Sbjct: 56  ARGVFDEMPRRNVVSWSVLIAASSRLGVLGDALSLFAGMLRGGERDRPNSFTVAALVAGC 115

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           A +    AG+ VHA A++LG   D+ ++ +LVDMY+KCG   ++ + F       V++W 
Sbjct: 116 ARAKDAVAGEQVHASAVKLGVDEDESVAGTLVDMYAKCGRVGSSWRAFVLTPQRSVLSWT 175

Query: 122 AIITCLDQQGCC---QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           ++I CL   G       A  +F  M    V P     + +++          G+ +H  +
Sbjct: 176 SMIACLVNHGDSGYRDTAIVLFKKMLVLKVWPTNATFSCILKVFDVPELLPSGKQVHGCL 235

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K G E D  +G AL++MY   G +   +R+   I H D+ S  +L + +       + +
Sbjct: 236 VKMGTEVDPALGTALLAMYGRCGGMDEITRLACRIRH-DAFSRTSLLTAYARNGCNMEAV 294

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           R+F  ML+     +      +L+ CSSL  +   K++H + +K+    + ++  ++V +Y
Sbjct: 295 RVFRDMLMGHMPIDQSAITSLLQVCSSLGQLRVVKEIHCYALKNFFRLDTLLLNAIVTVY 354

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G +  + + F++L NKD  ++TA++T Y Q   ++ AL  FR+M  +G++S+ F + 
Sbjct: 355 GKCGDIASSEIVFNTLENKDTISWTALLTCYVQNDLSQEALFFFREMVRKGLESSIFCIT 414

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L  CS  ++L+ G  +HS  VK G   D  V  ALV MYAKCG +  A  +F     R
Sbjct: 415 SVLRACSATSSLSCGWQIHSRVVKLGVDDDTSVENALVTMYAKCGVVQVALKIFNSMRNR 474

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
              SWN +I  + +HG    A++ F MM +E   PD+ TFV +LS+CS MGL+ EG ++F
Sbjct: 475 GIISWNALITSFSQHGNEVAAIQLFDMMQEEMVCPDDYTFVGLLSSCSRMGLVAEGCEYF 534

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
             +K  Y + P ++H+ CM+D+  RAG+F++   FI      P+ LVWE LL +C  HGN
Sbjct: 535 KQMKTKYNLEPKMEHYTCMVDLFARAGRFSDAMKFIDAMPCQPDQLVWEALLASCRVHGN 594

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           ++L    A+K+LE++P+  S Y+  S I A+   W++ +  R LL  Q ++K+   S ++
Sbjct: 595 LDLGRMAAKKILEIKPEDPSPYIILSSIHASIDMWDEKARNRTLLDFQQLRKDVGSSQLD 654

Query: 599 VDG 601
             G
Sbjct: 655 SQG 657



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 136/500 (27%), Positives = 226/500 (45%), Gaps = 15/500 (3%)

Query: 71  QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
           + VH  A++LGC    +L  +L+  Y   G   +A  VF  +   +VV+W  +I    + 
Sbjct: 22  RAVHGAAVKLGCLASTYLCNNLLLSYQARGHLADARGVFDEMPRRNVVSWSVLIAASSRL 81

Query: 131 GCCQEAAKIFNLMRESSV--KPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTL 188
           G   +A  +F  M       +PN F + +LV       D   GE +HA   K G + D  
Sbjct: 82  GVLGDALSLFAGMLRGGERDRPNSFTVAALVAGCARAKDAVAGEQVHASAVKLGVDEDES 141

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS---RFQDYESPDQGLRIFYQML 245
           V   LV MY + GRV    R F     +  +SW ++ +      D    D  + +F +ML
Sbjct: 142 VAGTLVDMYAKCGRVGSSWRAFVLTPQRSVLSWTSMIACLVNHGDSGYRDTAIVLFKKML 201

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
           +    P   TF  ILK       +  GKQ+H   +K   + +  +GT+L+ MY + G ++
Sbjct: 202 VLKVWPTNATFSCILKVFDVPELLPSGKQVHGCLVKMGTEVDPALGTALLAMYGRCGGMD 261

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
           +           D F+ T+++T+YA+ G    A++ FR M +  +  ++  + S L  CS
Sbjct: 262 EI-TRLACRIRHDAFSRTSLLTAYARNGCNMEAVRVFRDMLMGHMPIDQSAITSLLQVCS 320

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
            +  L   + +H  A+K    LD  +  A+V +Y KCG I  +E VF     +DT SW  
Sbjct: 321 SLGQLRVVKEIHCYALKNFFRLDTLLLNAIVTVYGKCGDIASSEIVFNTLENKDTISWTA 380

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIY 485
           ++  YV++ L ++AL  FR M+ +G          VL ACS    +  G +  S + K+ 
Sbjct: 381 LLTCYVQNDLSQEALFFFREMVRKGLESSIFCITSVLRACSATSSLSCGWQIHSRVVKL- 439

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKD 545
           G+         ++ +  + G   ++   I  +      + W  L+ + S HGN    E  
Sbjct: 440 GVDDDTSVENALVTMYAKCG-VVQVALKIFNSMRNRGIISWNALITSFSQHGN----EVA 494

Query: 546 AEKLLELEPKMESNYVFPSD 565
           A +L ++   M+   V P D
Sbjct: 495 AIQLFDM---MQEEMVCPDD 511



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 35/175 (20%), Positives = 78/175 (44%), Gaps = 9/175 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +++A ++F SM    ++SWNAL+  +++ G+    + LF  M++       ++   +L  
Sbjct: 461 VQVALKIFNSMRNRGIISWNALITSFSQHGNEVAAIQLFDMMQEEMVCPDDYTFVGLLSS 520

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            +  G +  G +    M  +            +VD++++ G   +A+K    +   PD +
Sbjct: 521 CSRMGLVAEGCEYFKQMKTKYNLEPKMEHYTCMVDLFARAGRFSDAMKFIDAMPCQPDQL 580

Query: 119 AWGAIITCLDQQGCCQ----EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
            W A++      G        A KI  +  E    P+ +++ S + A+ +  D++
Sbjct: 581 VWEALLASCRVHGNLDLGRMAAKKILEIKPED---PSPYIILSSIHASIDMWDEK 632


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 173/463 (37%), Positives = 264/463 (57%), Gaps = 2/463 (0%)

Query: 140 FNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV-GNALVSMYM 198
            +L++  S+ P+  + + L++  T  G    G  +HA +    F  + LV  N +V+MY 
Sbjct: 75  LDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYA 134

Query: 199 ENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIV 258
           + G +    R+F+ +  +D V+W AL + F     P   L +F QML  GF+PN  T   
Sbjct: 135 KCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSS 194

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKD 318
           +LKA  S   +  G QLHA  +K+    +  VG++LVDMY + G ++ A +AFD +  K 
Sbjct: 195 LLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKS 254

Query: 319 LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHS 378
             ++ A+I+ +A+ GE E AL    KM+ +  +   FT +S L+ C+ +  L  G+ +H+
Sbjct: 255 EVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHA 314

Query: 379 IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEK 438
             +K+G  L  F+   L+ MYAK GSIDDA+ VF      D  SWN M+ G  +HGLG++
Sbjct: 315 HMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKE 374

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMI 498
            L+ F  ML  G  P+EI+F+ VL+ACSH GL++EG  +F  +KK Y + P + H+   +
Sbjct: 375 TLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKK-YKVEPDVPHYVTFV 433

Query: 499 DILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMES 558
           D+LGR G     E FI E  + P A VW  LLGAC  H N+EL    AE+  EL+P    
Sbjct: 434 DLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSG 493

Query: 559 NYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
             +  S+I A+ GRW D + VR ++   G+KK+P+CSW+E++ 
Sbjct: 494 PRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIEN 536



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 118/382 (30%), Positives = 185/382 (48%), Gaps = 4/382 (1%)

Query: 55  STVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCS--LVDMYSKCGLADNALKVFYRI 112
           S +LK     G ++ G++VHA  +     LD  L     +V+MY+KCG  D+A ++F  +
Sbjct: 91  SKLLKECTRLGKVEQGRIVHAHLVD-SHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEM 149

Query: 113 KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172
              D+V W A+I    Q    ++A  +F  M     +PN F L+SL++A+        G 
Sbjct: 150 PTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGT 209

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
            +HA   KYG++S   VG+ALV MY   G +      F+ +  +  VSWNAL S      
Sbjct: 210 QLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKG 269

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
             +  L + ++M  K F+P   T+  +L AC+S+  +  GK +HAH IK  L     +G 
Sbjct: 270 EGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGN 329

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           +L+DMY K+G ++DA   FD L   D+ ++  ++T  AQ G  +  L  F +M   GI+ 
Sbjct: 330 TLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEP 389

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
           NE +    L  CS    L  G     +  K     D+      V +  + G +D AE   
Sbjct: 390 NEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFI 449

Query: 413 KGSALRDTAS-WNMMIGGYVKH 433
           +   +  TA+ W  ++G    H
Sbjct: 450 REMPIEPTAAVWGALLGACRMH 471



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 154/309 (49%), Gaps = 4/309 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+R+F  MP  ++V+W AL+ G++++   +  + LF  M  +  + + F+LS++LK 
Sbjct: 139 LDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKA 198

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +   +  G  +HA  ++ G     ++  +LVDMY++CG  D A   F  +     V+W
Sbjct: 199 SGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSW 258

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I+   ++G  + A  +   M+  + +P  F  +S++ A    G    G+ +HA + K
Sbjct: 259 NALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIK 318

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G +    +GN L+ MY + G +    RVF+ +   D VSWN + +    +    + L  
Sbjct: 319 SGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDR 378

Query: 241 FYQMLLKGFKPNMCTFIVILKAC--SSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           F QML  G +PN  +F+ +L AC  S L D G          K   D  H V  + VD+ 
Sbjct: 379 FEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYV--TFVDLL 436

Query: 299 DKSGCLEDA 307
            + G L+ A
Sbjct: 437 GRVGLLDRA 445



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 114/226 (50%), Gaps = 1/226 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A+  F  MP  + VSWNAL++G+A  G+G+  +HL   M+    + + F+ S+VL  
Sbjct: 240 MDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSA 299

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+ G ++ G+ VHA  I+ G  L  F+  +L+DMY+K G  D+A +VF R+  PDVV+W
Sbjct: 300 CASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSW 359

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             ++T   Q G  +E    F  M    ++PN+     ++ A + +G    G     ++ K
Sbjct: 360 NTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKK 419

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS-WNALF 225
           Y  E D       V +    G +    R    +  + + + W AL 
Sbjct: 420 YKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALL 465


>gi|297797117|ref|XP_002866443.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312278|gb|EFH42702.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 749

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 196/600 (32%), Positives = 318/600 (53%), Gaps = 3/600 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF  +P+ +V SW  L+ G  E+G  +  +  F  +   +    +++LS  ++    
Sbjct: 117 ARQVFDEIPQKSVFSWTVLMVGATENGFYRDGIDYFVEILGCDIVPDEYALSAAIQACIG 176

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              I  G++VHA  I  G +   F++ SL+ MY+K G   ++ KVF  +++ + V+W A+
Sbjct: 177 VDSIVVGEMVHAQVITRGFSSRTFVNTSLLGMYAKLGRIGDSCKVFNSLENRNQVSWNAM 236

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+     G   EA   F  M    ++PN     S+ +A  + GD   G  I+ +  + G 
Sbjct: 237 ISGFVSNGLYAEAYNSFLRMLGEEIRPNVACFISVSKAIGQLGDVEKGRYINRIAFEIGM 296

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS--WNALFSRFQDYESPDQGLRIF 241
           +S+  VG AL+ M+ + G V+    VF +      V+  WNA+ S F      ++ + +F
Sbjct: 297 QSNIHVGTALIDMFAKCGCVTESWSVFVSNFSGCGVNLPWNAMISGFTISGHGEEAMLLF 356

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M     K ++ T+   L + + +  + + KQLH    K    G  +   +L+D Y K 
Sbjct: 357 LRMCQNNIKRDVYTYCSTLNSIADMRSLEYVKQLHGMIWKSGSIGVSLC-NALMDAYAKC 415

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G L+     FD+    +  ++T ++T+Y+Q+ E E AL  F +MR  G + N+ T +  L
Sbjct: 416 GELDAMRKLFDTWEESNQISWTTLVTAYSQSSEWEDALSVFSQMREMGFQPNQVTFSGVL 475

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
             C+ + +L  G+ +HS+  KTG   D  V + L+ MYAKCGS+ DA  VF+     D  
Sbjct: 476 ASCASLCSLEYGQQVHSLTCKTGFARDKCVESVLIDMYAKCGSVRDAIKVFESLKDPDVI 535

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SW  MI GY +HG+ + ALE FR M      P+  TF+ +L ACSH GL++EG ++F  +
Sbjct: 536 SWTAMISGYAQHGMAKDALELFRKMELVLPNPNSATFLCLLFACSHGGLVDEGLRYFHLM 595

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
           ++ YG+ P I+H+AC++DILGR G+ TE   FI +  + P+  VW  LLGAC  HGNI+L
Sbjct: 596 EERYGLVPEIEHYACVVDILGRVGRLTEAWKFIMKMPIEPDEKVWSTLLGACRVHGNIQL 655

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
            +  A+K+L   P   +  V  S+     G       VR ++ SQ ++KE   SWI + G
Sbjct: 656 AKIAAQKVLSYNPDDFAALVLLSNTYREAGNIEGGLNVRNMMKSQAMRKETGMSWICIGG 715



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 144/528 (27%), Positives = 259/528 (49%), Gaps = 22/528 (4%)

Query: 49  FSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSC---SLVDMYSKCGLADNA 105
           +S+ SL  +++  A+   +K  + +H   I+    ++K L+     LV  YSKC    +A
Sbjct: 59  YSETSLIELIRESADERCLKKAKSIHGFVIKFQ-LIEKSLTVMLNQLVIAYSKCSDFGSA 117

Query: 106 LKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTET 165
            +VF  I    V +W  ++    + G  ++    F  +    + P+++ L++ ++A    
Sbjct: 118 RQVFDEIPQKSVFSWTVLMVGATENGFYRDGIDYFVEILGCDIVPDEYALSAAIQACIGV 177

Query: 166 GDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALF 225
                GE +HA +   GF S T V  +L+ MY + GR+    +VF ++ +++ VSWNA+ 
Sbjct: 178 DSIVVGEMVHAQVITRGFSSRTFVNTSLLGMYAKLGRIGDSCKVFNSLENRNQVSWNAMI 237

Query: 226 SRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLD 285
           S F       +    F +ML +  +PN+  FI + KA   L DV  G+ ++    +  + 
Sbjct: 238 SGFVSNGLYAEAYNSFLRMLGEEIRPNVACFISVSKAIGQLGDVEKGRYINRIAFEIGMQ 297

Query: 286 GNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN--KDLFAYTAIITSYAQAGEAEMALKCFR 343
            N  VGT+L+DM+ K GC+ ++   F S  +       + A+I+ +  +G  E A+  F 
Sbjct: 298 SNIHVGTALIDMFAKCGCVTESWSVFVSNFSGCGVNLPWNAMISGFTISGHGEEAMLLFL 357

Query: 344 KMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403
           +M    IK + +T  S LN  + + +L   + LH +  K+G  + + +  AL+  YAKCG
Sbjct: 358 RMCQNNIKRDVYTYCSTLNSIADMRSLEYVKQLHGMIWKSGS-IGVSLCNALMDAYAKCG 416

Query: 404 SIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
            +D    +F      +  SW  ++  Y +    E AL  F  M + G+ P+++TF  VL+
Sbjct: 417 ELDAMRKLFDTWEESNQISWTTLVTAYSQSSEWEDALSVFSQMREMGFQPNQVTFSGVLA 476

Query: 464 ACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTE-IENFITETKLTP 521
           +C+ +  +E G++ H  + K  +     ++  + +ID+  + G   + I+ F  E+   P
Sbjct: 477 SCASLCSLEYGQQVHSLTCKTGFARDKCVE--SVLIDMYAKCGSVRDAIKVF--ESLKDP 532

Query: 522 NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISAT 569
           + + W  ++   + HG      KDA   LEL  KME   V P+  SAT
Sbjct: 533 DVISWTAMISGYAQHGM----AKDA---LELFRKME--LVLPNPNSAT 571



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 94/166 (56%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++  +++F +  E N +SW  L+  Y++S + +  + +F  M++M  + ++ + S VL  
Sbjct: 418 LDAMRKLFDTWEESNQISWTTLVTAYSQSSEWEDALSVFSQMREMGFQPNQVTFSGVLAS 477

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+   ++ GQ VH++  + G A DK +   L+DMY+KCG   +A+KVF  +KDPDV++W
Sbjct: 478 CASLCSLEYGQQVHSLTCKTGFARDKCVESVLIDMYAKCGSVRDAIKVFESLKDPDVISW 537

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
            A+I+   Q G  ++A ++F  M      PN      L+ A +  G
Sbjct: 538 TAMISGYAQHGMAKDALELFRKMELVLPNPNSATFLCLLFACSHGG 583


>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 187/575 (32%), Positives = 305/575 (53%), Gaps = 20/575 (3%)

Query: 39  FCSMKDMEKKFSK-FSLSTVLKGFANSGYIK---AGQVVHAMAIRLGCALDKFLSCSLVD 94
           F S+    + F + ++L+T +     S + K    G+ +H+  +  G         SL++
Sbjct: 21  FSSISTAIQSFQQPYNLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLIN 80

Query: 95  MYSKCGLADNALKVFYRIKDP----DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKP 150
           MYSKC   + AL +F    DP    +V A+ AII+     G  +E  + +  MR   V P
Sbjct: 81  MYSKCNQMNFALSIF---SDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIP 137

Query: 151 NQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF 210
           ++F     ++A  +  + +    IH ++ K+G E D  +G+ALV+ Y++ G + +    F
Sbjct: 138 DKFTFPCAIKACLDVLEIK---KIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAF 194

Query: 211 EAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVG 270
           E +  +D V WNA+ + +      +  L  F +M  +   P+  T   +L   + + D+ 
Sbjct: 195 EELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLN 254

Query: 271 FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
            G+ +H   +K   D    V  SL+DMY K  C+EDA   F+ +  KD+F++ +I++ + 
Sbjct: 255 NGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHE 314

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG------ 384
           Q G+ +  L+   +M   GI+ +  T+ + L  CS +A L +GR +H   + +G      
Sbjct: 315 QCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGK 374

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
            + D+ +  A++ MYAKCGS+ DA  VF+  + +D ASWN+MI GY  HG G +ALE F 
Sbjct: 375 DIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFS 434

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA 504
            M +    PDE+TFV VLSACSH G + +G+     +K  Y + PTI+H+ C+ID+LGRA
Sbjct: 435 RMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRA 494

Query: 505 GKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564
           G+  E         +  N +VW  LL AC  H +  L E  A+++ ELEP+   +YV  S
Sbjct: 495 GQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMS 554

Query: 565 DISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           ++    GR+ +   VR  +  Q ++K P CSWIE+
Sbjct: 555 NVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIEL 589



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 199/403 (49%), Gaps = 10/403 (2%)

Query: 13  ELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQV 72
           E+NV ++NA+++G+  +G  ++    +  M++      KF+    +K   +   IK    
Sbjct: 101 EINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEIKK--- 157

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           +H +  + G  LD F+  +LV+ Y K GL ++A   F  +   DVV W A++    Q G 
Sbjct: 158 IHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQ 217

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
            +   + F  M + SV P++F +T ++      GD   G  IH    K G++S   V N+
Sbjct: 218 FEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNS 277

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           L+ MY +   +     +FE +  +D  SWN++ S  +     D  LR+  +ML  G +P+
Sbjct: 278 LIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPD 337

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSL--DGNHV----VGTSLVDMYDKSGCLED 306
           + T   +L ACS L+ +  G+++H + I   L  DG  +    +  +++DMY K G + D
Sbjct: 338 LVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRD 397

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A + F+ ++NKD+ ++  +I  Y   G    AL+ F +M    +K +E T    L+ CS 
Sbjct: 398 AHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSH 457

Query: 367 VATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
              ++ GR  L  +  K      +   T ++ M  + G +D+A
Sbjct: 458 AGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEA 500



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 166/322 (51%), Gaps = 23/322 (7%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A+  F+ +P  +VV WNA++NGYA+ G  + V+  F  M D     S+F+++ VL  
Sbjct: 187 MEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSV 246

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           FA  G +  G+++H  A+++G      +S SL+DMY KC   ++AL++F  +++ D+ +W
Sbjct: 247 FAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSW 306

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +I++  +Q G      ++ + M  + ++P+   +T+++ A +       G  IH  +  
Sbjct: 307 NSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIV 366

Query: 181 YGFE------SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
            G         D L+ NA++ MY + G +     VFE ++++D  SWN +   +  +   
Sbjct: 367 SGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYG 426

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLH---------AHTIKHSLD 285
           ++ L +F +M     KP+  TF+ +L ACS    V  G+            A TI+H   
Sbjct: 427 NEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHY-- 484

Query: 286 GNHVVGTSLVDMYDKSGCLEDA 307
                 T ++DM  ++G L++A
Sbjct: 485 ------TCVIDMLGRAGQLDEA 500


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  334 bits (857), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 175/540 (32%), Positives = 295/540 (54%), Gaps = 32/540 (5%)

Query: 91  SLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLM-RESSVK 149
           +L+  YSK G   +  +VF  + + DVV+W ++++     G   E+ +++N+M ++ SV 
Sbjct: 76  TLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVN 135

Query: 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRV 209
            N+   ++++  ++  G    G  IH  I K+G++S   VG+ LV MY + G ++  +R+
Sbjct: 136 LNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRI 195

Query: 210 FEAIAHQ-------------------------------DSVSWNALFSRFQDYESPDQGL 238
           FE I  +                               DS+SW  + +         + +
Sbjct: 196 FEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAV 255

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
             F +M ++GF  +  TF  +L AC     +  GKQ+HA+ I+     N  VG++L+DMY
Sbjct: 256 DKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMY 315

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K   ++ A   F  + +K++ ++TA++  Y Q G +E A++ F  M+   I  ++FTL 
Sbjct: 316 CKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLG 375

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S ++ C+ +A+L  G   H  A+ +G +  + VS AL+ +Y KCGS++ A  +F    +R
Sbjct: 376 SVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIR 435

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D  SW  ++ GY + G   + +  F  ML  G VPD +TFV VLSACS  GL+E+G  +F
Sbjct: 436 DEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYF 495

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
             + K + ITP   H+ CMID+L RAG+  E +NFI +   +P+A+ W  LL +C  +GN
Sbjct: 496 ECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGN 555

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           +E+ +  AE L +LEP+  ++Y+  S I A +G+W+D + +R  +   G+KKEP  SWI+
Sbjct: 556 LEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKEPGHSWIK 615



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 135/539 (25%), Positives = 232/539 (43%), Gaps = 69/539 (12%)

Query: 5   KRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLKGFAN 63
           +RVF SMP  +VVSWN+LL+GYA +G   + + ++  M KD     ++ + ST+L   +N
Sbjct: 91  QRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSN 150

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV----- 118
            G++  G+ +H    + G     F+   LVDMY+K G  ++A ++F  I + ++V     
Sbjct: 151 RGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTM 210

Query: 119 --------------------------AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQ 152
                                     +W  IIT L Q G  +EA   F  M       +Q
Sbjct: 211 ITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQ 270

Query: 153 FVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEA 212
           F   S++ A         G+ IHA I +  ++ +  VG+AL+ MY +   V Y   VF  
Sbjct: 271 FTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRK 330

Query: 213 IAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFG 272
           + H++ +SW A+   +      ++ +RIF  M      P+  T   ++ +C++L+ +  G
Sbjct: 331 MRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEG 390

Query: 273 KQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQA 332
            Q H   +   L     V  +L+ +Y K G LE A   F  +  +D  ++TA+++ YAQ 
Sbjct: 391 AQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQF 450

Query: 333 GEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS 392
           G+A   +  F  M   GI  +  T    L+ CS    +  G       VK   +  +   
Sbjct: 451 GKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDH 510

Query: 393 -TALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGY 451
            T ++ + ++ G +++A+              N M                        +
Sbjct: 511 YTCMIDLLSRAGRLEEAKNFI-----------NQM-----------------------PF 536

Query: 452 VPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEI 510
            PD I +  +LS+C   G +E GK    S+ K+    P    +  +  I    GK+ ++
Sbjct: 537 SPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPA--SYILLSSIYAAKGKWDDV 593



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 115/443 (25%), Positives = 198/443 (44%), Gaps = 43/443 (9%)

Query: 132 CCQ-----EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
           CC+     +  K+   +  +   P  F+  +L+    + GD +   ++   I     + +
Sbjct: 15  CCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIP----QPN 70

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
               N L+S Y + G +    RVF+++ + D VSWN+L S +       + +R++  ML 
Sbjct: 71  LFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLK 130

Query: 247 KG-FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
            G    N  TF  +L   S+   V  G+Q+H    K        VG+ LVDMY K+G + 
Sbjct: 131 DGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFIN 190

Query: 306 DAGVA-------------------------------FDSLANKDLFAYTAIITSYAQAGE 334
           DA                                  FD++  KD  ++T IIT   Q G 
Sbjct: 191 DANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGL 250

Query: 335 AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA 394
            + A+  F++M +EG   ++FT  S L  C     L  G+ +H+  ++T +  ++FV +A
Sbjct: 251 FKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSA 310

Query: 395 LVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD 454
           L+ MY KC ++  AEAVF+    ++  SW  M+ GY ++G  E+A+  F  M      PD
Sbjct: 311 LLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPD 370

Query: 455 EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFI 514
           + T   V+S+C+++  +EEG + F       G+   +     +I + G+ G         
Sbjct: 371 DFTLGSVISSCANLASLEEGAQ-FHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLF 429

Query: 515 TETKLTPNALVWENLLGACSWHG 537
            E K+  + + W  L+   +  G
Sbjct: 430 HEMKIR-DEVSWTALVSGYAQFG 451



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 112/465 (24%), Positives = 204/465 (43%), Gaps = 35/465 (7%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F +MPE + +SW  ++ G  ++G  ++ +  F  M        +F+  +VL     
Sbjct: 223 AEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGG 282

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G+ +HA  IR     + F+  +L+DMY KC     A  VF +++  +V++W A+
Sbjct: 283 FLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAM 342

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    Q G  +EA +IF  M+ + + P+ F L S++ +         G   H      G 
Sbjct: 343 LVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGL 402

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
                V NAL+++Y + G + +  ++F  +  +D VSW AL S +  +   ++ + +F  
Sbjct: 403 ICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFET 462

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK-HSLDGNHVVGTSLVDMYDKSG 302
           ML  G  P+  TF+ +L ACS    V  G       +K H +       T ++D+  ++G
Sbjct: 463 MLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAG 522

Query: 303 CLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFTLASC 360
            LE+A    + +  + D   +  +++S    G  E+       + +LE      + L S 
Sbjct: 523 RLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLSS 582

Query: 361 LNGC----SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
           +         VA L  G     +  + GH    + +   +       S DD  + F    
Sbjct: 583 IYAAKGKWDDVAKLRKGMREMGVKKEPGHSWIKYKNKVHIF------SADDRSSPFSDQI 636

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRM-MLDEGYVPDEITFVV 460
                        Y K       LE+  + M++EGYVPD ++FV+
Sbjct: 637 -------------YAK-------LESLYLKMIEEGYVPD-MSFVL 660



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 86/166 (51%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+ VF+ M   NV+SW A+L GY ++G  ++ + +FC M+  E     F+L +V+  
Sbjct: 321 VKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISS 380

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            AN   ++ G   H  A+  G      +S +L+ +Y KCG  ++A ++F+ +K  D V+W
Sbjct: 381 CANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSW 440

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
            A+++   Q G   E   +F  M    + P+      ++ A +  G
Sbjct: 441 TALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAG 486



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 116/284 (40%), Gaps = 63/284 (22%)

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
           +   LK C    +    K+LH   I+   +    +  +L++ Y K G L++A   FD + 
Sbjct: 8   YTAALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIP 67

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS----------------------- 352
             +LF++  ++++Y++ G  +   + F  M    + S                       
Sbjct: 68  QPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNM 127

Query: 353 ---------NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403
                    N  T ++ L   S    +  GR +H    K G+   +FV + LV MYAK G
Sbjct: 128 MLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTG 187

Query: 404 SIDD-------------------------------AEAVFKGSALRDTASWNMMIGGYVK 432
            I+D                               AE +F     +D+ SW  +I G  +
Sbjct: 188 FINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQ 247

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
           +GL ++A++ F+ M  EG+  D+ TF  VL+AC     ++EGK+
Sbjct: 248 NGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQ 291



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 84/211 (39%), Gaps = 36/211 (17%)

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
           SN +T A  L  C      A  + LH   ++T    + F+   L+  Y K G + +A  V
Sbjct: 5   SNYYTAA--LKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNV 62

Query: 412 FKGSALRDTASWNMMI-------------------------------GGYVKHGLGEKAL 440
           F      +  SWN ++                                GY  +GL  +++
Sbjct: 63  FDHIPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESV 122

Query: 441 EAFRMMLDEGYVP-DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMID 499
             + MML +G V  + ITF  +L   S+ G ++ G++    I K +G    +   + ++D
Sbjct: 123 RVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFK-FGYQSYLFVGSPLVD 181

Query: 500 ILGRAGKFTEIENFITETKLTPNALVWENLL 530
           +  + G F    N I E     N +V+  ++
Sbjct: 182 MYAKTG-FINDANRIFEEIPEKNIVVYNTMI 211


>gi|225217042|gb|ACN85326.1| EMB2261 putative [Oryza brachyantha]
          Length = 626

 Score =  334 bits (857), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 180/537 (33%), Positives = 305/537 (56%), Gaps = 6/537 (1%)

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLA-DNALKVFYRIKDPDVVAWGAIITC 126
           + G  +HA A R G   D++L+ +L+  Y +      +AL+ F  +   DVVA  +I+  
Sbjct: 54  RLGYCIHARAARGGLLADRYLANALLSFYVRLPRHLPHALRAFDDLPRRDVVAHSSILAA 113

Query: 127 LDQQGCCQEA-AKIFNLMRESS-VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
             + G  + A A + +++ E+  V PN    ++ V+A +   D+  G  +H  I   GF 
Sbjct: 114 FLRAGMPRRALASLRSMLAEADDVSPNAHAFSAAVKACSVLRDRNAGACLHGSILVRGFG 173

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
            D +V +ALV MY      S   + FE +   D + + +L S F   +  ++ +R F  M
Sbjct: 174 DDDIVLSALVDMYGHASAPSDAQKAFEEMRAPDGICYTSLISAFVRNDWFEEAVRWFRSM 233

Query: 245 LL-KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           L+  G +P+ CTF  ++ A  +L     G+Q HA  +   L GN +V +S +DMY K G 
Sbjct: 234 LMMNGVRPDGCTFGSMMTALGNLKRENQGRQAHAQVVTRGLCGNVIVESSTLDMYAKCGS 293

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           + +A   FD +  ++  ++ A++  Y Q GE E  +  FR+M  +    + ++L + L  
Sbjct: 294 MVEARKVFDRMLVRNEVSWCALLGGYCQNGEYEKVVALFREM--DKKDGDWYSLGTVLRA 351

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ ++++  G+ +H   ++ G   D+ V +ALV +YAKCG++D A  VF+ S +R+T +W
Sbjct: 352 CAGLSSVKPGKEIHCRFLRMGGWRDVVVESALVDLYAKCGAVDYAYTVFEASTVRNTITW 411

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N MIGG+ ++G GE+A+  F  M+ EG  PD I+FV VL ACSH G++E+G+K+F+S+  
Sbjct: 412 NAMIGGFAQNGHGERAINLFDRMVREGPRPDYISFVSVLFACSHTGMVEQGRKYFNSMSN 471

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            Y I P I+H+ CM+D+L R     E E+ I ++    ++ +W  +LGA + H N ++ E
Sbjct: 472 NYTIAPGIEHYNCMVDLLSRVELLEEAEDLINKSPFRGDSSLWAAILGASATHSNPDVAE 531

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           + A+K++EL+P+   +YV   ++  T GRW D   +R L+ S+ +KKEP  SWI+ +
Sbjct: 532 RVAKKMMELQPQYHLSYVLLENVYRTVGRWEDALEIRRLMESRKVKKEPGMSWIDAN 588



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 89/164 (54%), Gaps = 4/164 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSK-FSLSTVLKGFA 62
           A++VF  M   N VSW ALL GY ++G+ +KV+ LF   ++M+KK    +SL TVL+  A
Sbjct: 297 ARKVFDRMLVRNEVSWCALLGGYCQNGEYEKVVALF---REMDKKDGDWYSLGTVLRACA 353

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
               +K G+ +H   +R+G   D  +  +LVD+Y+KCG  D A  VF      + + W A
Sbjct: 354 GLSSVKPGKEIHCRFLRMGGWRDVVVESALVDLYAKCGAVDYAYTVFEASTVRNTITWNA 413

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
           +I    Q G  + A  +F+ M     +P+     S++ A + TG
Sbjct: 414 MIGGFAQNGHGERAINLFDRMVREGPRPDYISFVSVLFACSHTG 457



 Score = 43.5 bits (101), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 42/71 (59%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  VF++    N ++WNA++ G+A++G G++ ++LF  M     +    S  +VL  
Sbjct: 393 VDYAYTVFEASTVRNTITWNAMIGGFAQNGHGERAINLFDRMVREGPRPDYISFVSVLFA 452

Query: 61  FANSGYIKAGQ 71
            +++G ++ G+
Sbjct: 453 CSHTGMVEQGR 463


>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 172/462 (37%), Positives = 259/462 (56%), Gaps = 35/462 (7%)

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGR---VSYGSRVFEAIAHQDSVSWNALFSRFQDY 231
           HA I K G    T   + L++    N     + Y   +F  I + +S  WN +   + + 
Sbjct: 27  HAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYANS 86

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
            +P+  L IF+QML     P+  TF   LK+C S S V  G+Q+H H +K  L  +  + 
Sbjct: 87  PTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQ 146

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMA------------- 338
            +L+ +Y   GC+EDA    D +  +D+ ++ A++++YA+ G  E+A             
Sbjct: 147 NTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELASRRVFGETPVKNV 206

Query: 339 -------------------LKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSI 379
                              L  F  M+  G+K +  TL S L+ C+ V  L+ G  +H+ 
Sbjct: 207 VSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAY 266

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
             K G  +D FV+TALV MY+KCGSI+ A  VF     +D ++WN +I G   HG G+ A
Sbjct: 267 IDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHA 326

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMID 499
           L+ F  ML EG+ P+E+TFV VLSACS  GL++EG++ F+ +  ++GI PTI+H+ CM+D
Sbjct: 327 LQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVD 386

Query: 500 ILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESN 559
           +LGR G   E E  + +      ++VWE+LLGAC  HGN+EL E+ A+KLLEL P+  S+
Sbjct: 387 LLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLELSPQESSS 446

Query: 560 YVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           +V  S++ A+ GRW D   VR  + +QG++K+P CS IEVDG
Sbjct: 447 FVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMIEVDG 488



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 174/380 (45%), Gaps = 42/380 (11%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A  +F  +P  N   WN ++  YA S   +  + +F  M        K++ +  LK   +
Sbjct: 61  AHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGS 120

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ G+ +H   ++ G   D F+  +L+ +Y+ CG  ++A  +  R+ + DVV+W A+
Sbjct: 121 FSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNAL 180

Query: 124 ITCLDQQGCCQEAAK--------------------------------IFNLMRESSVKPN 151
           ++   ++G  + A++                                +F  M+ + VKP+
Sbjct: 181 LSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPD 240

Query: 152 QFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFE 211
              L S++ A    G    GE +HA I K G   D  V  ALV MY + G +     VF 
Sbjct: 241 NCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFN 300

Query: 212 AIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACS--SLSDV 269
           +   +D  +WN++ S    + S    L+IF +ML++GFKPN  TF+ +L ACS   L D 
Sbjct: 301 SCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDE 360

Query: 270 G---FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL-FAYTAI 325
           G   F   +H H I+ +++        +VD+  + G LE+A      +  K+    + ++
Sbjct: 361 GREMFNLMVHVHGIQPTIEHY----GCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESL 416

Query: 326 ITSYAQAGEAEMALKCFRKM 345
           + +    G  E+A +  +K+
Sbjct: 417 LGACRNHGNVELAERVAQKL 436



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 127/248 (51%), Gaps = 3/248 (1%)

Query: 1   MELA-KRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           MELA +RVF   P  NVVSWNA++ GY+ +G   +V+ LF  M+    K    +L +VL 
Sbjct: 190 MELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLS 249

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             A+ G +  G+ VHA   + G ++D F++ +LVDMYSKCG  + AL+VF      D+  
Sbjct: 250 ACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDIST 309

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG-ESIHAVI 178
           W +II+ L   G  Q A +IF+ M     KPN+     ++ A +  G    G E  + ++
Sbjct: 310 WNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMV 369

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQD-SVSWNALFSRFQDYESPDQG 237
             +G +        +V +    G +     + + +  ++ SV W +L    +++ + +  
Sbjct: 370 HVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELA 429

Query: 238 LRIFYQML 245
            R+  ++L
Sbjct: 430 ERVAQKLL 437


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 184/564 (32%), Positives = 289/564 (51%), Gaps = 35/564 (6%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLA--DNALKVFYRIKDPDVVAWGAIITCLDQ- 129
            H   IR G   D + +  L  M +    A  + A KVF  I  P+  AW  +I      
Sbjct: 49  THGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASG 108

Query: 130 QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
                      +++ ES   PN++    L++A  E      G+S+H +  K    SD  V
Sbjct: 109 PDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFV 168

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
            N+L+  Y   G +    +VF  I  +D VSWN++ + F    SPD+ L +F +M  +  
Sbjct: 169 ANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDV 228

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
           K +  T + +L AC+ + ++ FG+Q+ ++  ++ ++ N  +  +++DMY K G +EDA  
Sbjct: 229 KASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKR 288

Query: 310 AFD-------------------------------SLANKDLFAYTAIITSYAQAGEAEMA 338
            FD                               S+  KD+ A+ A+I++Y Q G+   A
Sbjct: 289 LFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEA 348

Query: 339 LKCFRKMRLE-GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVA 397
           L  F +++L+  +K N+ TL S L+ C+ V  L  GR +HS   K G  ++  V++AL+ 
Sbjct: 349 LIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIH 408

Query: 398 MYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEIT 457
           MY+KCG ++ +  VF     RD   W+ MIGG   HG G +A++ F  M +    P+ +T
Sbjct: 409 MYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVT 468

Query: 458 FVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET 517
           F  V  ACSH GL++E +  F  ++  YGI P  KH+AC++D+LGR+G   +   FI   
Sbjct: 469 FTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAM 528

Query: 518 KLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFS 577
            + P+  VW  LLGAC  H N+ L E    +LLELEP+ +  +V  S+I A  G+W + S
Sbjct: 529 PIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVS 588

Query: 578 GVRALLSSQGIKKEPSCSWIEVDG 601
            +R  +   G+KKEP CS IE+DG
Sbjct: 589 ELRKHMRVTGLKKEPGCSSIEIDG 612



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 117/469 (24%), Positives = 215/469 (45%), Gaps = 35/469 (7%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKF-SKFSLSTVLK 59
           +E A++VF  +P+ N  +WN L+  YA   D    +  F  M    + + +K++   ++K
Sbjct: 80  LEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIK 139

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             A    +  GQ +H MA++     D F++ SL+  Y  CG  D+A KVF  IK+ DVV+
Sbjct: 140 AAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVS 199

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W ++I    Q+G   +A ++F  M    VK +   +  ++ A  +  +   G  + + I 
Sbjct: 200 WNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIE 259

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS------------------- 220
           +     +  + NA++ MY + G +    R+F+A+  +D+V+                   
Sbjct: 260 ENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAARE 319

Query: 221 ------------WNALFSRFQDYESPDQGLRIFYQM-LLKGFKPNMCTFIVILKACSSLS 267
                       WNAL S ++    P++ L +F+++ L K  K N  T +  L AC+ + 
Sbjct: 320 VLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVG 379

Query: 268 DVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIIT 327
            +  G+ +H++  KH +  N  V ++L+ MY K G LE +   F+S+  +D+F ++A+I 
Sbjct: 380 ALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIG 439

Query: 328 SYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR-LLHSIAVKTGHL 386
             A  G    A+  F KM+   +K N  T  +    CS    +     L H +    G +
Sbjct: 440 GLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIV 499

Query: 387 LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS-WNMMIGGYVKHG 434
            +      +V +  + G ++ A    +   +  + S W  ++G    H 
Sbjct: 500 PEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHA 548


>gi|359478617|ref|XP_003632146.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 628

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 173/547 (31%), Positives = 301/547 (55%), Gaps = 3/547 (0%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
           L+ ++   A SG +  G  +H+  I++G   + ++  +LVDMY KCG   +A ++F  + 
Sbjct: 82  LNRMVSSCAKSGSVFVGIQLHSTIIKVGFDSNVYICSALVDMYGKCGAVSSAQRLFDEMP 141

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES 173
             +VV W ++I+     GC + A ++F  M +  + P  F +++++       D + G  
Sbjct: 142 HRNVVTWNSLISGYLHVGCPEIAIELFLEMVKVGIDPTPFSVSAVLVGCWRMEDTKLGIQ 201

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           +H +  K GF  + +VG  L+ +Y +   +     +F+ +  ++ ++W ++ + +   + 
Sbjct: 202 VHGLSMKCGFCYNIVVGTCLIDLYSKGWNIDASRLMFDLMPERNIITWTSMVAGYAHCQQ 261

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
           P   + +   M   G + N  T+  +L + SS +D+   KQ+H   I+  L+ N  +  +
Sbjct: 262 PVAAMVLVRDMQRLGIRLNYVTYNCLLSSFSSSNDLDHCKQVHCRIIREGLESNSYLEVT 321

Query: 294 LVDMYDK--SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
           LV +Y +  S  LED       +   D  ++ A+I   +  G  E ALKCF KMR  GI 
Sbjct: 322 LVTVYSECSSSSLEDFNKVCSGVTRWDQISWNAVIGGLSNLGNGEAALKCFSKMRQAGID 381

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            + FT  S L     ++TL  G+ +H++ +K G+  ++ V   LV+MYA+CGSI+DA+ V
Sbjct: 382 MDLFTFTSVLRAIGMISTLDEGKQIHALVLKAGYGSNLNVQNGLVSMYARCGSINDAKRV 441

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F      D  SWN ++ G   HG G +A+E F  M   G  PD  TF+VVLSAC H+GL+
Sbjct: 442 FSLMDRHDVISWNSLLSGCAYHGYGREAVELFEQMRRSGVKPDNTTFLVVLSACRHVGLL 501

Query: 472 EEGKKHFSSIKKIYGI-TPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
           ++G ++F  ++  Y + +PT +H++ M+D+  RAG  +E E+FI    + P   V++ LL
Sbjct: 502 DKGLEYFDLMRNDYSLESPTTEHYSSMVDLFSRAGYLSEAEDFINTMPIEPGPSVYKALL 561

Query: 531 GACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKK 590
            AC  HGN+E+  + A+KLL++ P     YV  S++ AT G W++ + +R ++  +G++K
Sbjct: 562 SACQVHGNVEIAVRCAKKLLQMCPNDPVIYVLLSNVQATVGYWDNVASIRKVMCDRGVRK 621

Query: 591 EPSCSWI 597
           EP  SWI
Sbjct: 622 EPGYSWI 628



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 115/433 (26%), Positives = 209/433 (48%), Gaps = 13/433 (3%)

Query: 138 KIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMY 197
           K+   +++    P   +L  +V +  ++G    G  +H+ I K GF+S+  + +ALV MY
Sbjct: 65  KLLAQLQQHGSAPTAHILNRMVSSCAKSGSVFVGIQLHSTIIKVGFDSNVYICSALVDMY 124

Query: 198 MENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFI 257
            + G VS   R+F+ + H++ V+WN+L S +     P+  + +F +M+  G  P   +  
Sbjct: 125 GKCGAVSSAQRLFDEMPHRNVVTWNSLISGYLHVGCPEIAIELFLEMVKVGIDPTPFSVS 184

Query: 258 VILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK 317
            +L  C  + D   G Q+H  ++K     N VVGT L+D+Y K   ++ + + FD +  +
Sbjct: 185 AVLVGCWRMEDTKLGIQVHGLSMKCGFCYNIVVGTCLIDLYSKGWNIDASRLMFDLMPER 244

Query: 318 DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLH 377
           ++  +T+++  YA   +   A+   R M+  GI+ N  T    L+  S    L + + +H
Sbjct: 245 NIITWTSMVAGYAHCQQPVAAMVLVRDMQRLGIRLNYVTYNCLLSSFSSSNDLDHCKQVH 304

Query: 378 SIAVKTGHLLDMFVSTALVAMYAKC--GSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
              ++ G   + ++   LV +Y++C   S++D   V  G    D  SWN +IGG    G 
Sbjct: 305 CRIIREGLESNSYLEVTLVTVYSECSSSSLEDFNKVCSGVTRWDQISWNAVIGGLSNLGN 364

Query: 436 GEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHF 494
           GE AL+ F  M   G   D  TF  VL A   +  ++EGK+ H   +K  YG    +++ 
Sbjct: 365 GEAALKCFSKMRQAGIDMDLFTFTSVLRAIGMISTLDEGKQIHALVLKAGYGSNLNVQNG 424

Query: 495 ACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEP 554
             ++ +  R G   + +   +      + + W +LL  C++HG          + +EL  
Sbjct: 425 --LVSMYARCGSINDAKRVFSLMD-RHDVISWNSLLSGCAYHGY-------GREAVELFE 474

Query: 555 KMESNYVFPSDIS 567
           +M  + V P + +
Sbjct: 475 QMRRSGVKPDNTT 487



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 115/469 (24%), Positives = 220/469 (46%), Gaps = 15/469 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R+F  MP  NVV+WN+L++GY   G  +  + LF  M  +    + FS+S VL G   
Sbjct: 133 AQRLFDEMPHRNVVTWNSLISGYLHVGCPEIAIELFLEMVKVGIDPTPFSVSAVLVGCWR 192

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
               K G  VH ++++ G   +  +   L+D+YSK    D +  +F  + + +++ W ++
Sbjct: 193 MEDTKLGIQVHGLSMKCGFCYNIVVGTCLIDLYSKGWNIDASRLMFDLMPERNIITWTSM 252

Query: 124 ITCLDQQGCCQEAAKIFNLMRESS---VKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
           +        CQ+      L+R+     ++ N      L+ + + + D    + +H  I +
Sbjct: 253 VAGYAH---CQQPVAAMVLVRDMQRLGIRLNYVTYNCLLSSFSSSNDLDHCKQVHCRIIR 309

Query: 181 YGFESDTLVGNALVSMYMENGRVSYG--SRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            G ES++ +   LV++Y E    S    ++V   +   D +SWNA+     +  + +  L
Sbjct: 310 EGLESNSYLEVTLVTVYSECSSSSLEDFNKVCSGVTRWDQISWNAVIGGLSNLGNGEAAL 369

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           + F +M   G   ++ TF  +L+A   +S +  GKQ+HA  +K     N  V   LV MY
Sbjct: 370 KCFSKMRQAGIDMDLFTFTSVLRAIGMISTLDEGKQIHALVLKAGYGSNLNVQNGLVSMY 429

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            + G + DA   F  +   D+ ++ ++++  A  G    A++ F +MR  G+K +  T  
Sbjct: 430 ARCGSINDAKRVFSLMDRHDVISWNSLLSGCAYHGYGREAVELFEQMRRSGVKPDNTTFL 489

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS---TALVAMYAKCGSIDDAEAVFKGS 415
             L+ C  V  L  G L +   ++  + L+   +   +++V ++++ G + +AE      
Sbjct: 490 VVLSACRHVGLLDKG-LEYFDLMRNDYSLESPTTEHYSSMVDLFSRAGYLSEAEDFINTM 548

Query: 416 ALRDTAS-WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
            +    S +  ++     HG  E A+   + +L     P++    V+LS
Sbjct: 549 PIEPGPSVYKALLSACQVHGNVEIAVRCAKKLLQ--MCPNDPVIYVLLS 595



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 180/358 (50%), Gaps = 21/358 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ ++ +F  MPE N+++W +++ GYA        M L   M+ +  + +  + + +L  
Sbjct: 231 IDASRLMFDLMPERNIITWTSMVAGYAHCQQPVAAMVLVRDMQRLGIRLNYVTYNCLLSS 290

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLA--DNALKVFYRIKDPDVV 118
           F++S  +   + VH   IR G   + +L  +LV +YS+C  +  ++  KV   +   D +
Sbjct: 291 FSSSNDLDHCKQVHCRIIREGLESNSYLEVTLVTVYSECSSSSLEDFNKVCSGVTRWDQI 350

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +W A+I  L   G  + A K F+ MR++ +  + F  TS++RA         G+ IHA++
Sbjct: 351 SWNAVIGGLSNLGNGEAALKCFSKMRQAGIDMDLFTFTSVLRAIGMISTLDEGKQIHALV 410

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K G+ S+  V N LVSMY   G ++   RVF  +   D +SWN+L S    +    + +
Sbjct: 411 LKAGYGSNLNVQNGLVSMYARCGSINDAKRVFSLMDRHDVISWNSLLSGCAYHGYGREAV 470

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ----------LHAHTIKHSLDGNH 288
            +F QM   G KP+  TF+V+L AC  +  +  G +          L + T +H      
Sbjct: 471 ELFEQMRRSGVKPDNTTFLVVLSACRHVGLLDKGLEYFDLMRNDYSLESPTTEHY----- 525

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKM 345
              +S+VD++ ++G L +A    +++        Y A++++    G  E+A++C +K+
Sbjct: 526 ---SSMVDLFSRAGYLSEAEDFINTMPIEPGPSVYKALLSACQVHGNVEIAVRCAKKL 580



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 124/261 (47%)

Query: 216 QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL 275
            D  S N+  +   D +     L++  Q+   G  P       ++ +C+    V  G QL
Sbjct: 42  NDFFSCNSHIACDTDEKQSSVDLKLLAQLQQHGSAPTAHILNRMVSSCAKSGSVFVGIQL 101

Query: 276 HAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEA 335
           H+  IK   D N  + ++LVDMY K G +  A   FD + ++++  + ++I+ Y   G  
Sbjct: 102 HSTIIKVGFDSNVYICSALVDMYGKCGAVSSAQRLFDEMPHRNVVTWNSLISGYLHVGCP 161

Query: 336 EMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTAL 395
           E+A++ F +M   GI    F++++ L GC  +     G  +H +++K G   ++ V T L
Sbjct: 162 EIAIELFLEMVKVGIDPTPFSVSAVLVGCWRMEDTKLGIQVHGLSMKCGFCYNIVVGTCL 221

Query: 396 VAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE 455
           + +Y+K  +ID +  +F     R+  +W  M+ GY        A+   R M   G   + 
Sbjct: 222 IDLYSKGWNIDASRLMFDLMPERNIITWTSMVAGYAHCQQPVAAMVLVRDMQRLGIRLNY 281

Query: 456 ITFVVVLSACSHMGLIEEGKK 476
           +T+  +LS+ S    ++  K+
Sbjct: 282 VTYNCLLSSFSSSNDLDHCKQ 302


>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 697

 Score =  334 bits (857), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 191/602 (31%), Positives = 319/602 (52%), Gaps = 3/602 (0%)

Query: 2   ELAKRVFKSMPELNVVSW-NALLNGYAESGDGQKVMHLFCSMKDME-KKFSKFSLSTVLK 59
           + AK VF  +     +S  N L+ GY  +    + + LF  +      K   ++  +VLK
Sbjct: 55  DYAKNVFDVIENPFEISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLK 114

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
                  +  GQ++H   ++ G  +D  +  SLV MY+KC   + A+K+F  + D DV  
Sbjct: 115 ACGGLRRVVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVAC 174

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  +I+C  Q G  +EA + F +MR    +P+   +T+ + +     D   G  IH  + 
Sbjct: 175 WNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELV 234

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
             GF  D+ V  ALV MY + G++     VFE + ++  V+WN++ + +         ++
Sbjct: 235 NSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQ 294

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F +M  +G KP + T    L ACS  + +  GK +H + I++ +  +  + +SL+D+Y 
Sbjct: 295 LFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYF 354

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G +E A   F  +      ++  +I+ Y   G+   AL+ F +M    ++ +  T  S
Sbjct: 355 KCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTS 414

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L  CS +A L  GR +H++ V+     +  V  AL+ MYAKCG++++A  VFK    RD
Sbjct: 415 VLAACSQLAALEKGREIHNLIVERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPERD 474

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SW  MI  Y  HG   +ALE F  ML     PD +TF+ +LSACSH GL+++G  HF+
Sbjct: 475 LVSWTSMITAYGSHGRVYEALELFAEMLQSNVKPDRVTFLAILSACSHAGLVDDGLYHFN 534

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTE-IENFITETKLTPNALVWENLLGACSWHGN 538
            +  +YGI P I+H++C+I +LGRAG+  E  E   +  +++ +  +   L  AC  H N
Sbjct: 535 QMINVYGIIPRIEHYSCLITLLGRAGRLHEAYEILQSNPEISDDFQLLSTLFSACRLHKN 594

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           ++L  + AE L++ +P   S Y+  S++ A+ G+W++   VR+ +   G+KK P CSWIE
Sbjct: 595 LDLGVEIAENLIDKDPDDSSTYIILSNMYASFGKWDEVRMVRSKMKDLGLKKNPGCSWIE 654

Query: 599 VD 600
           ++
Sbjct: 655 IN 656



 Score =  218 bits (554), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 147/519 (28%), Positives = 253/519 (48%), Gaps = 17/519 (3%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
           L  +L+   NS  +K G+V+H   + LG   D ++  +L+ +Y  C L D A  VF  I+
Sbjct: 6   LIPLLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVFDVIE 65

Query: 114 DP-DVVAWGAIITCLDQQGCCQEAAKIFN-LMRESSVKPNQFVLTSLVRATTETGDQRCG 171
           +P ++     ++    +     EA  +F+ LM    +KP+ +   S+++A         G
Sbjct: 66  NPFEISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRVVLG 125

Query: 172 ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY 231
           + IH  + K G   D +VG++LV MY +        ++F+ +  +D   WN + S +   
Sbjct: 126 QMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQS 185

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
              ++ LR F  M   GF+P+  T    + +C+ L D+  G+++H   +      +  V 
Sbjct: 186 GKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVS 245

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
            +LVDMY K G LE A   F+ + NK + A+ ++I  Y   G+    ++ F++M  EG+K
Sbjct: 246 AALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVK 305

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
               TL S L  CS  A L  G+ +H   ++     D+F++++L+ +Y KCG ++ AE +
Sbjct: 306 PTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETI 365

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           FK      T SWN+MI GYV  G    AL  F  M      PD ITF  VL+ACS +  +
Sbjct: 366 FKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAAL 425

Query: 472 EEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTP--NALVWEN 528
           E+G++ H   +++  G    +     ++D+  + G    +E      K  P  + + W +
Sbjct: 426 EKGREIHNLIVERNLGNNEVV--MGALLDMYAKCGA---VEEAFGVFKCLPERDLVSWTS 480

Query: 529 LLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           ++ A   HG +        + LEL  +M  + V P  ++
Sbjct: 481 MITAYGSHGRV-------YEALELFAEMLQSNVKPDRVT 512



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 139/264 (52%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E+A  VF+ MP   VV+WN+++NGY   GDG   + LF  M     K +  +L++ L  
Sbjct: 258 LEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMA 317

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            + S  +  G+ VH   IR     D FL+ SL+D+Y KCG  ++A  +F  +     V+W
Sbjct: 318 CSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSW 377

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+    +G   +A ++F  M +S V+P+    TS++ A ++      G  IH +I +
Sbjct: 378 NVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLIVE 437

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
               ++ +V  AL+ MY + G V     VF+ +  +D VSW ++ + +  +    + L +
Sbjct: 438 RNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPERDLVSWTSMITAYGSHGRVYEALEL 497

Query: 241 FYQMLLKGFKPNMCTFIVILKACS 264
           F +ML    KP+  TF+ IL ACS
Sbjct: 498 FAEMLQSNVKPDRVTFLAILSACS 521



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 118/243 (48%), Gaps = 3/243 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ +FK MP+   VSWN +++GY   G     + LF  M     +    + ++VL  
Sbjct: 359 VESAETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAA 418

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    ++ G+ +H + +      ++ +  +L+DMY+KCG  + A  VF  + + D+V+W
Sbjct: 419 CSQLAALEKGREIHNLIVERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPERDLVSW 478

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG-ESIHAVIC 179
            ++IT     G   EA ++F  M +S+VKP++    +++ A +  G    G    + +I 
Sbjct: 479 TSMITAYGSHGRVYEALELFAEMLQSNVKPDRVTFLAILSACSHAGLVDDGLYHFNQMIN 538

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH--QDSVSWNALFSRFQDYESPDQG 237
            YG        + L+++    GR+     + ++      D    + LFS  + +++ D G
Sbjct: 539 VYGIIPRIEHYSCLITLLGRAGRLHEAYEILQSNPEISDDFQLLSTLFSACRLHKNLDLG 598

Query: 238 LRI 240
           + I
Sbjct: 599 VEI 601


>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score =  334 bits (857), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 187/575 (32%), Positives = 305/575 (53%), Gaps = 20/575 (3%)

Query: 39  FCSMKDMEKKFSK-FSLSTVLKGFANSGYIK---AGQVVHAMAIRLGCALDKFLSCSLVD 94
           F S+    + F + ++L+T +     S + K    G+ +H+  +  G         SL++
Sbjct: 21  FSSISTAIQSFQQPYNLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLIN 80

Query: 95  MYSKCGLADNALKVFYRIKDP----DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKP 150
           MYSKC   + AL +F    DP    +V A+ AII+     G  +E  + +  MR   V P
Sbjct: 81  MYSKCNQMNFALSIF---SDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIP 137

Query: 151 NQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF 210
           ++F     ++A  +  + +    IH ++ K+G E D  +G+ALV+ Y++ G + +    F
Sbjct: 138 DKFTFPCAIKACLDVLEIK---KIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAF 194

Query: 211 EAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVG 270
           E +  +D V WNA+ + +      +  L  F +M  +   P+  T   +L   + + D+ 
Sbjct: 195 EELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLN 254

Query: 271 FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
            G+ +H   +K   D    V  SL+DMY K  C+EDA   F+ +  KD+F++ +I++ + 
Sbjct: 255 NGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHE 314

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG------ 384
           Q G+ +  L+   +M   GI+ +  T+ + L  CS +A L +GR +H   + +G      
Sbjct: 315 QCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGK 374

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
            + D+ +  A++ MYAKCGS+ DA  VF+  + +D ASWN+MI GY  HG G +ALE F 
Sbjct: 375 DIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFS 434

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA 504
            M +    PDE+TFV VLSACSH G + +G+     +K  Y + PTI+H+ C+ID+LGRA
Sbjct: 435 RMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRA 494

Query: 505 GKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564
           G+  E         +  N +VW  LL AC  H +  L E  A+++ ELEP+   +YV  S
Sbjct: 495 GQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMS 554

Query: 565 DISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           ++    GR+ +   VR  +  Q ++K P CSWIE+
Sbjct: 555 NVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIEL 589



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 199/403 (49%), Gaps = 10/403 (2%)

Query: 13  ELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQV 72
           E+NV ++NA+++G+  +G  ++    +  M++      KF+    +K   +   IK    
Sbjct: 101 EINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEIKK--- 157

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           +H +  + G  LD F+  +LV+ Y K GL ++A   F  +   DVV W A++    Q G 
Sbjct: 158 IHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQ 217

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
            +   + F  M + SV P++F +T ++      GD   G  IH    K G++S   V N+
Sbjct: 218 FEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNS 277

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           L+ MY +   +     +FE +  +D  SWN++ S  +     D  LR+  +ML  G +P+
Sbjct: 278 LIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPD 337

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSL--DGNHV----VGTSLVDMYDKSGCLED 306
           + T   +L ACS L+ +  G+++H + I   L  DG  +    +  +++DMY K G + D
Sbjct: 338 LVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRD 397

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A + F+ ++NKD+ ++  +I  Y   G    AL+ F +M    +K +E T    L+ CS 
Sbjct: 398 AHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSH 457

Query: 367 VATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
              ++ GR  L  +  K      +   T ++ M  + G +D+A
Sbjct: 458 AGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEA 500



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 166/322 (51%), Gaps = 23/322 (7%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A+  F+ +P  +VV WNA++NGYA+ G  + V+  F  M D     S+F+++ VL  
Sbjct: 187 MEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSV 246

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           FA  G +  G+++H  A+++G      +S SL+DMY KC   ++AL++F  +++ D+ +W
Sbjct: 247 FAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSW 306

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +I++  +Q G      ++ + M  + ++P+   +T+++ A +       G  IH  +  
Sbjct: 307 NSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIV 366

Query: 181 YGFES------DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
            G         D L+ NA++ MY + G +     VFE ++++D  SWN +   +  +   
Sbjct: 367 SGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYG 426

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLH---------AHTIKHSLD 285
           ++ L +F +M     KP+  TF+ +L ACS    V  G+            A TI+H   
Sbjct: 427 NEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHY-- 484

Query: 286 GNHVVGTSLVDMYDKSGCLEDA 307
                 T ++DM  ++G L++A
Sbjct: 485 ------TCVIDMLGRAGQLDEA 500


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  334 bits (856), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 183/565 (32%), Positives = 308/565 (54%), Gaps = 14/565 (2%)

Query: 40  CSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHA-MAIRLGCALDKFLS--CSLVDMY 96
           CS+K+         +  +LK  A +  ++ G+ +HA + +R   + D  ++   SL+++Y
Sbjct: 21  CSLKE---------VVNLLKFSATAKSLRFGKTIHAQLVVRNQTSKDSDITQINSLINLY 71

Query: 97  SKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVL 155
           SKCG +  A K+F R+   +VV+W A++     +G   E   +F NL+   S  PN+++ 
Sbjct: 72  SKCGQSKCARKLFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIF 131

Query: 156 TSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH 215
           T ++    ++G  + G+  H  + K G      V NAL+ MY     V    ++ + +  
Sbjct: 132 TIVLSCCADSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPG 191

Query: 216 QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL 275
            D  S+N++ S   +     +  ++  +M+ +    +  T++ +L  C+ + D+  G Q+
Sbjct: 192 DDVFSYNSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQI 251

Query: 276 HAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEA 335
           HA  +K  L  +  V ++L+D Y K G + +A   FD L ++++ A+TA++T+Y Q G  
Sbjct: 252 HAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHF 311

Query: 336 EMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTAL 395
           E  L  F KM LE  + NEFT A  LN C+ +  LA G LLH   V +G    + V  AL
Sbjct: 312 EETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNAL 371

Query: 396 VAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE 455
           + MY+K G+ID +  VF     RD  +WN MI GY  HGLG++AL  F+ M+  G  P+ 
Sbjct: 372 INMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGECPNY 431

Query: 456 ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFI- 514
           +TF+ VLSAC H+ L++EG  +F  I K + + P ++H+ CM+ +LGRAG   E ENF+ 
Sbjct: 432 VTFIGVLSACVHLALVQEGFYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDEAENFMK 491

Query: 515 TETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWN 574
           T T++  + + W  LL AC  H N  L ++  E +++++P     Y   S++ A   +W+
Sbjct: 492 TTTQVKWDVVAWRTLLNACHIHRNYNLGKQITETVIQMDPHDVGTYTLLSNMHAKARKWD 551

Query: 575 DFSGVRALLSSQGIKKEPSCSWIEV 599
               +R L+  + IKKEP  SW+++
Sbjct: 552 GVVKIRKLMKERNIKKEPGASWLDI 576



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 122/454 (26%), Positives = 233/454 (51%), Gaps = 15/454 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKF-SKFSLSTVLKGFA 62
           A+++F  M + NVVSW+AL+ GY   G+  +V+ LF ++  ++  + +++  + VL   A
Sbjct: 80  ARKLFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCA 139

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           +SG +K G+  H   ++ G  L +++  +L+ MYS+C   D+A+++   +   DV ++ +
Sbjct: 140 DSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNS 199

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I++ L + GC  EAA++   M +  V  +     S++    +  D + G  IHA + K G
Sbjct: 200 ILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTG 259

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
              D  V + L+  Y + G V    + F+ +  ++ V+W A+ + +      ++ L +F 
Sbjct: 260 LVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFT 319

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M L+  +PN  TF V+L AC+SL  + +G  LH   +      + +VG +L++MY KSG
Sbjct: 320 KMELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNALINMYSKSG 379

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            ++ +   F ++ N+D+  + A+I  Y+  G  + AL  F+ M   G   N  T    L+
Sbjct: 380 NIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGECPNYVTFIGVLS 439

Query: 363 GCSPVATLANG-----RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
            C  +A +  G     +++    V+ G  L+ +  T +VA+  + G +D+AE   K +  
Sbjct: 440 ACVHLALVQEGFYYFDQIMKKFDVEPG--LEHY--TCMVALLGRAGLLDEAENFMKTTTQ 495

Query: 418 R--DTASWNMMIGG---YVKHGLGEKALEAFRMM 446
              D  +W  ++     +  + LG++  E    M
Sbjct: 496 VKWDVVAWRTLLNACHIHRNYNLGKQITETVIQM 529


>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
          Length = 907

 Score =  334 bits (856), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 182/598 (30%), Positives = 311/598 (52%), Gaps = 3/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF +M + NVV W  ++  Y  +G+      ++  M+    + S  ++  +L G   
Sbjct: 102 ARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLE 161

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
             ++   Q +HA  I+ G   D  L+ S++++Y KCG  ++A  +F  +   DV++W ++
Sbjct: 162 LVHL---QCLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSL 218

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           ++   Q G  +E  ++   M+   ++P+Q    SLV A         G+ +H  I + G 
Sbjct: 219 VSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGL 278

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E D+ +  +L+ MY++ G V+   R+FE + H+D +SW A+ S     +  D  + +F +
Sbjct: 279 EQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRR 338

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           ML     P+  T   +L AC+ L     G  +H + ++  +  +     SLV MY K G 
Sbjct: 339 MLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGH 398

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           LE +   FD ++ +D+ ++ AI++ +AQ G    AL  F +MR    + +  T+ S L  
Sbjct: 399 LEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQA 458

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +  L  G+ +H+   K+     + + TALV MY+KCG +  A+  F     +D  SW
Sbjct: 459 CASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSW 518

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           + +I GY  HG GE AL  +   L  G  P+ + ++ +LSACSH GL+++G   F S+ K
Sbjct: 519 SSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTK 578

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            +GI P ++H AC++D+L RAG+  E  +F       P+  V   LL AC   GN+EL +
Sbjct: 579 DFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDACRTTGNVELGD 638

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
             A +++ L+P    NYV  +   A+  RW+    V   + S  +KK P  S+IE+ G
Sbjct: 639 IVAREIVILKPANAGNYVQLAHSYASMKRWDGVGEVWTQMKSLHLKKLPGWSFIELHG 696



 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 147/524 (28%), Positives = 265/524 (50%), Gaps = 7/524 (1%)

Query: 18  SWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMA 77
           S+NA++N  + +G    V+  + SM   +      +  +++K   +      G   H   
Sbjct: 15  SYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRV 74

Query: 78  IRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAA 137
           I  G + D +++ SL++ YSK G   +A KVF  + D +VV W  +I C  + G    A 
Sbjct: 75  IVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAF 134

Query: 138 KIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMY 197
            ++N+MR   ++P+   +  L+    E    +C   +HA + +YGF SD  + N+++++Y
Sbjct: 135 SMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQC---LHACVIQYGFGSDVALANSMLNVY 191

Query: 198 MENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFI 257
            + GRV     +FE +  +D +SWN+L S +    +  + L++  +M   G +P+  TF 
Sbjct: 192 CKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFG 251

Query: 258 VILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK 317
            ++ A +  S +G GK +H H ++  L+ +  + TSL+ MY K G +  A   F+ + +K
Sbjct: 252 SLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHK 311

Query: 318 DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLH 377
           D+ ++TA+I+   Q   A+MA+  FR+M    +  +  T+AS L  C+ + +   G  +H
Sbjct: 312 DVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVH 371

Query: 378 SIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGE 437
              ++    LD+    +LV MYAKCG ++ + +VF   + RD  SWN ++ G+ ++G   
Sbjct: 372 GYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLC 431

Query: 438 KALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACM 497
           KAL  F  M      PD IT V +L AC+ +G + +GK   + + K   + P I     +
Sbjct: 432 KALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTK-SCLGPCILIDTAL 490

Query: 498 IDILGRAGKFTEIENFITETKLTPNALV-WENLLGACSWHGNIE 540
           +D+  + G     +      ++    LV W +++     HG  E
Sbjct: 491 VDMYSKCGDLGSAQKCF--DRMPQQDLVSWSSIIAGYGSHGKGE 532



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 212/414 (51%), Gaps = 1/414 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ +F+ M   +V+SWN+L++GYA+ G+ ++V+ L   MK    +  + +  +++  
Sbjct: 197 VEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSA 256

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    +  G++VH   +R G   D  +  SL+ MY KCG  ++A ++F  +   DV++W
Sbjct: 257 AAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISW 316

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I+ L Q  C   A  +F  M +S V P+   + S++ A  E G    G S+H  I +
Sbjct: 317 TAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILR 376

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              + D    N+LV+MY + G +     VF+ ++ +D VSWNA+ S         + L +
Sbjct: 377 QRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLL 436

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M     +P+  T + +L+AC+S+  +  GK +H    K  L    ++ T+LVDMY K
Sbjct: 437 FNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSK 496

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L  A   FD +  +DL ++++II  Y   G+ E AL+ +      GI+ N     S 
Sbjct: 497 CGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSI 556

Query: 361 LNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
           L+ CS    +  G    HS+    G    +     +V + ++ G +++A + +K
Sbjct: 557 LSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYK 610



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 175/356 (49%), Gaps = 3/356 (0%)

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES 173
           +P   ++ AII  L   G   +    ++ M  +   P+     SLV+A T       G S
Sbjct: 10  NPATKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLS 69

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
            H  +   G+ SD+ +  +L++ Y + G      +VF+ +  ++ V W  +   +     
Sbjct: 70  FHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGE 129

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
            D    ++  M  +G +P+  T + +L     L  +   + LHA  I++    +  +  S
Sbjct: 130 HDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHL---QCLHACVIQYGFGSDVALANS 186

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           ++++Y K G +EDA   F+ +  +D+ ++ ++++ YAQ G     L+   +M+ +GI+ +
Sbjct: 187 MLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPD 246

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
           + T  S ++  +  + L  G+++H   ++ G   D  + T+L+ MY KCG+++ A  +F+
Sbjct: 247 QQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFE 306

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
           G   +D  SW  MI G V++   + A+  FR ML    +P   T   VL+AC+ +G
Sbjct: 307 GMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELG 362



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 138/269 (51%), Gaps = 3/269 (1%)

Query: 207 SRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266
           SR   +  +  + S+NA+ +R     +    L  +  ML     P+  TF  ++KAC+SL
Sbjct: 2   SRAKPSFLNPATKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSL 61

Query: 267 SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
                G   H   I      +  + TSL++ Y K G  + A   FD++ ++++  +T +I
Sbjct: 62  DLFSHGLSFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMI 121

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL 386
             Y +AGE ++A   +  MR +GI+ +  T+   L+G   V  L + + LH+  ++ G  
Sbjct: 122 GCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSG---VLELVHLQCLHACVIQYGFG 178

Query: 387 LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM 446
            D+ ++ +++ +Y KCG ++DA+A+F+    RD  SWN ++ GY + G   + L+    M
Sbjct: 179 SDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRM 238

Query: 447 LDEGYVPDEITFVVVLSACSHMGLIEEGK 475
             +G  PD+ TF  ++SA +    +  GK
Sbjct: 239 KTDGIEPDQQTFGSLVSAAAMQSKLGVGK 267


>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
 gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
          Length = 801

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 189/622 (30%), Positives = 331/622 (53%), Gaps = 32/622 (5%)

Query: 4   AKRVFKSMP---ELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLK 59
           AK+ F  +P   + +VV+WNA+++ +  +G  ++ + LF  M  D     +  +  +VL 
Sbjct: 61  AKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLD 120

Query: 60  GFANSGYIKAGQV--VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD- 116
               +G +    V  +H   +  G   + F+  +LVD Y K G  D+A +VF R  D + 
Sbjct: 121 SCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEP 180

Query: 117 ---VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATT--ETGDQRCG 171
              +V   A+I+   Q G  QE+ ++F  M     KP+   L S++ A +    G     
Sbjct: 181 STSLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNACSMLPVG----- 235

Query: 172 ESIHAVICKYGFE-----SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS 226
            S  A + +   E      D ++G  L++ Y  +  +S     F+AI   D VSWNA+ +
Sbjct: 236 -SATAFVLEQAMEVVSATRDNVLGTTLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAA 294

Query: 227 RFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL---SDVGFGKQLHAHTIKHS 283
            +  +  P + L +F +MLL+G +P++ TFI  L AC++    +    GK++ +   +  
Sbjct: 295 AYLQHHRPREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAG 354

Query: 284 LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA--NKDLFAYTAIITSYAQAGEAEMALKC 341
           L+G+  V  + ++MY K G L DA   F+ ++   +D   + +++ +Y   G  + A + 
Sbjct: 355 LEGDTAVANATLNMYAKCGSLADARAVFERISPTRRDCITWNSMLAAYGHHGLGKEAFEL 414

Query: 342 FRKMRLEG-IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYA 400
           F+ M  E  +K N+ T  + L+  +   ++A GR +H+  V  G   D  +  AL+ MYA
Sbjct: 415 FQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYA 474

Query: 401 KCGSIDDAEAVFKGSA--LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITF 458
           KCGS+DDA+A+F  S+    D  +W  ++ GY ++G  E+AL+ F  M  +G  P+ ITF
Sbjct: 475 KCGSLDDAQAIFDKSSSNQEDVIAWTSLVAGYAQYGQAERALKLFWTMQQQGVRPNHITF 534

Query: 459 VVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK 518
           +  L+AC+H G +E+G +  S +   +GI P  KHF+C++D+LGR G+  E E  +  T 
Sbjct: 535 ISALTACNHGGKLEQGCELLSGMTPDHGIVPASKHFSCIVDLLGRCGRLDEAEKLLERTS 594

Query: 519 LTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSG 578
              + + W  LL AC     +E  E+ AE++++L+P++ S+Y+  + + A  GRWN+ + 
Sbjct: 595 -QADVITWMALLDACKNSKELERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAAT 653

Query: 579 VRALLSSQGIKKEPSCSWIEVD 600
           +R  +  +GI+ +P CS +EV+
Sbjct: 654 IRKTMLDKGIRADPGCSAVEVN 675



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 155/547 (28%), Positives = 263/547 (48%), Gaps = 38/547 (6%)

Query: 45  MEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADN 104
           ME + +  +L  ++   +  G + AG+ +H+         +  L  +L+ MYSKCG   +
Sbjct: 1   MEVRPNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLID 60

Query: 105 ALKVFYRIKDP---DVVAWGAIITCLDQQGCCQEAAKIFNLM-RESSVKPNQFVLTSLVR 160
           A + F R+      DVV W A+I+   + G  +EA ++F  M  + +  PN     S++ 
Sbjct: 61  AKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLD 120

Query: 161 ATTETG-----DQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH 215
           +  E G     D R   +IH  I   G E +  V  ALV  Y + G +     VF   + 
Sbjct: 121 SCVEAGLLSLEDVR---AIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSD 177

Query: 216 QDS----VSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL---SD 268
           ++     V+ +A+ S       P + LR+FY M L+G KP+  T + +L ACS L   S 
Sbjct: 178 EEPSTSLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNACSMLPVGSA 237

Query: 269 VGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITS 328
             F  +     +  + D  +V+GT+L+  Y +S  L  A   FD++ + D+ ++ A+  +
Sbjct: 238 TAFVLEQAMEVVSATRD--NVLGTTLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAA 295

Query: 329 YAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS---PVATLANGRLLHSIAVKTGH 385
           Y Q      AL  F +M LEG++ +  T  + L  C+   P    A G+ + S+  + G 
Sbjct: 296 YLQHHRPREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGL 355

Query: 386 LLDMFVSTALVAMYAKCGSIDDAEAVFK--GSALRDTASWNMMIGGYVKHGLGEKALEAF 443
             D  V+ A + MYAKCGS+ DA AVF+      RD  +WN M+  Y  HGLG++A E F
Sbjct: 356 EGDTAVANATLNMYAKCGSLADARAVFERISPTRRDCITWNSMLAAYGHHGLGKEAFELF 415

Query: 444 RMMLDEGYV-PDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDIL 501
           + M  E  V P+++TFV VL A +    I +G++ H   +   +     I++   ++++ 
Sbjct: 416 QAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQN--ALLNMY 473

Query: 502 GRAGKFTEIEN-FITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNY 560
            + G   + +  F   +    + + W +L+   + +G        AE+ L+L   M+   
Sbjct: 474 AKCGSLDDAQAIFDKSSSNQEDVIAWTSLVAGYAQYGQ-------AERALKLFWTMQQQG 526

Query: 561 VFPSDIS 567
           V P+ I+
Sbjct: 527 VRPNHIT 533


>gi|297722687|ref|NP_001173707.1| Os03g0840400 [Oryza sativa Japonica Group]
 gi|255675038|dbj|BAH92435.1| Os03g0840400 [Oryza sativa Japonica Group]
          Length = 1632

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 195/610 (31%), Positives = 325/610 (53%), Gaps = 11/610 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A+ +F  MP  + VSWN L+ GY+  G  +  +  F   +       +F+ +  L  
Sbjct: 26  MRHARLLFDGMPRRDAVSWNTLIAGYSGLGSCRLALDAFRDARASGDGVDRFTFAAALAS 85

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A  G  + G+VVH +A+  G A   FL+ S++DMY+KCG+ D    +F R ++    +W
Sbjct: 86  CARVGDWRDGRVVHGLAVVSGLARTAFLTNSVIDMYAKCGMIDEVRLLFDRAEERGEASW 145

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD-QRCGESIHAVIC 179
             +++   + G  + A  +   M  S VK + F L  +++A +E GD +     +H+ + 
Sbjct: 146 NLLLSAYVRMGWPEVAVNVLVWMHRSGVKLDSFALGGILKACSELGDSEDVRRMLHSCVV 205

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNAL---FSRFQDYESPD- 235
           K G + D  VG+A+V MY +NG +    +VF+ I +Q+ V +NA+   F+R  +   P+ 
Sbjct: 206 KVGLDLDVFVGSAMVDMYAKNGGLEEAIKVFDCIPNQNVVVYNAMIAGFARLGNDPCPEI 265

Query: 236 --QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
             + + +F  ML K  KP+  TF  +L+ C+  + V  G+Q+HAH I   L G+  + + 
Sbjct: 266 RIEAVTLFSNMLKKRIKPSKFTFKSVLEVCNLTNAVRCGRQIHAHVILSGLQGDEFIASV 325

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           L+++Y K+ C+ D+   FD    +D+F +T++IT++ Q    E AL  FR++      ++
Sbjct: 326 LINLYSKARCVNDSLRCFDMTVKEDVFIWTSMITAFVQNEHFEKALYLFRELLYTRKGTD 385

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFV--STALVAMYAKCGSIDDAEAV 411
           +FT++S ++ C+ ++     + +H  AVKTG  LD F     + +AMY   G +  ++  
Sbjct: 386 QFTISSVMSACAALSVPTTCKQIHCHAVKTG--LDQFTVSGNSQIAMYRNIGDLKASKQT 443

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F+  +  DT SW+ MI  Y  HG   KALE F  M + G + +E   +  L ACSH GL 
Sbjct: 444 FEQISCLDTFSWSAMILSYAVHGYESKALELFEKMKNLGVMMNESASLAALIACSHQGLG 503

Query: 472 EEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLG 531
           +EG +++ +     G +  +K  ACM+D+LGR GK  + E+FI  +    + ++W  LL 
Sbjct: 504 DEGLRYYENTIPDDGFSLDVKLKACMVDLLGRVGKIADAEDFIMSSGSENDPILWHALLR 563

Query: 532 ACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
           AC  HG+ E   K  EKL+ELEP   S+YV   ++    G+ +     R L+  +GI  E
Sbjct: 564 ACRVHGDKERCTKIGEKLMELEPFSASSYVMLYNLYMDAGKISLAMRTRGLMRERGISNE 623

Query: 592 PSCSWIEVDG 601
              SW +  G
Sbjct: 624 AGISWTDFGG 633



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/391 (28%), Positives = 186/391 (47%), Gaps = 7/391 (1%)

Query: 87  FLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRES 146
           FL  +L+ +Y +CG   +A  +F  +   D V+W  +I      G C+ A   F   R S
Sbjct: 11  FLRNNLLALYCRCGDMRHARLLFDGMPRRDAVSWNTLIAGYSGLGSCRLALDAFRDARAS 70

Query: 147 SVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYG 206
               ++F   + + +    GD R G  +H +    G      + N+++ MY + G +   
Sbjct: 71  GDGVDRFTFAAALASCARVGDWRDGRVVHGLAVVSGLARTAFLTNSVIDMYAKCGMIDEV 130

Query: 207 SRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266
             +F+    +   SWN L S +     P+  + +   M   G K +      ILKACS L
Sbjct: 131 RLLFDRAEERGEASWNLLLSAYVRMGWPEVAVNVLVWMHRSGVKLDSFALGGILKACSEL 190

Query: 267 SDV-GFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
            D     + LH+  +K  LD +  VG+++VDMY K+G LE+A   FD + N+++  Y A+
Sbjct: 191 GDSEDVRRMLHSCVVKVGLDLDVFVGSAMVDMYAKNGGLEEAIKVFDCIPNQNVVVYNAM 250

Query: 326 ITSYAQAGEAE------MALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSI 379
           I  +A+ G          A+  F  M  + IK ++FT  S L  C+    +  GR +H+ 
Sbjct: 251 IAGFARLGNDPCPEIRIEAVTLFSNMLKKRIKPSKFTFKSVLEVCNLTNAVRCGRQIHAH 310

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
            + +G   D F+++ L+ +Y+K   ++D+   F  +   D   W  MI  +V++   EKA
Sbjct: 311 VILSGLQGDEFIASVLINLYSKARCVNDSLRCFDMTVKEDVFIWTSMITAFVQNEHFEKA 370

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           L  FR +L      D+ T   V+SAC+ + +
Sbjct: 371 LYLFRELLYTRKGTDQFTISSVMSACAALSV 401



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 141/293 (48%), Gaps = 7/293 (2%)

Query: 191 NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFK 250
           N L+++Y   G + +   +F+ +  +D+VSWN L + +    S    L  F      G  
Sbjct: 14  NNLLALYCRCGDMRHARLLFDGMPRRDAVSWNTLIAGYSGLGSCRLALDAFRDARASGDG 73

Query: 251 PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVA 310
            +  TF   L +C+ + D   G+ +H   +   L     +  S++DMY K G +++  + 
Sbjct: 74  VDRFTFAAALASCARVGDWRDGRVVHGLAVVSGLARTAFLTNSVIDMYAKCGMIDEVRLL 133

Query: 311 FDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATL 370
           FD    +   ++  ++++Y + G  E+A+     M   G+K + F L   L  CS +   
Sbjct: 134 FDRAEERGEASWNLLLSAYVRMGWPEVAVNVLVWMHRSGVKLDSFALGGILKACSELGDS 193

Query: 371 AN-GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
            +  R+LHS  VK G  LD+FV +A+V MYAK G +++A  VF     ++   +N MI G
Sbjct: 194 EDVRRMLHSCVVKVGLDLDVFVGSAMVDMYAKNGGLEEAIKVFDCIPNQNVVVYNAMIAG 253

Query: 430 YVKHG------LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
           + + G      +  +A+  F  ML +   P + TF  VL  C+    +  G++
Sbjct: 254 FARLGNDPCPEIRIEAVTLFSNMLKKRIKPSKFTFKSVLEVCNLTNAVRCGRQ 306



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 108/218 (49%)

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
            +L+ +Y + G +  A + FD +  +D  ++  +I  Y+  G   +AL  FR  R  G  
Sbjct: 14  NNLLALYCRCGDMRHARLLFDGMPRRDAVSWNTLIAGYSGLGSCRLALDAFRDARASGDG 73

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            + FT A+ L  C+ V    +GR++H +AV +G     F++ +++ MYAKCG ID+   +
Sbjct: 74  VDRFTFAAALASCARVGDWRDGRVVHGLAVVSGLARTAFLTNSVIDMYAKCGMIDEVRLL 133

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F  +  R  ASWN+++  YV+ G  E A+     M   G   D      +L ACS +G  
Sbjct: 134 FDRAEERGEASWNLLLSAYVRMGWPEVAVNVLVWMHRSGVKLDSFALGGILKACSELGDS 193

Query: 472 EEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTE 509
           E+ ++   S     G+   +   + M+D+  + G   E
Sbjct: 194 EDVRRMLHSCVVKVGLDLDVFVGSAMVDMYAKNGGLEE 231



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 1/122 (0%)

Query: 389 MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
           +F+   L+A+Y +CG +  A  +F G   RD  SWN +I GY   G    AL+AFR    
Sbjct: 10  LFLRNNLLALYCRCGDMRHARLLFDGMPRRDAVSWNTLIAGYSGLGSCRLALDAFRDARA 69

Query: 449 EGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFT 508
            G   D  TF   L++C+ +G   +G+     +  + G+  T      +ID+  + G   
Sbjct: 70  SGDGVDRFTFAAALASCARVGDWRDGRV-VHGLAVVSGLARTAFLTNSVIDMYAKCGMID 128

Query: 509 EI 510
           E+
Sbjct: 129 EV 130


>gi|413952893|gb|AFW85542.1| hypothetical protein ZEAMMB73_270374 [Zea mays]
          Length = 716

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 182/595 (30%), Positives = 309/595 (51%), Gaps = 4/595 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAES---GDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           A+ VF   P  +  S+ A+L    ++    D   + H     +   +    F LS  LK 
Sbjct: 116 ARMVFDGTPRPDAYSYGAMLWCLVQTERHADAVALHHDMRRRRPCPEAQDDFVLSLALKA 175

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              S     G+ +H  AI++G A D F+  SLVDMY+K    + A KVF RI D +VV+W
Sbjct: 176 CIRSAEYSYGRSLHCDAIKVGGA-DGFVMNSLVDMYAKAEDLECARKVFERIPDRNVVSW 234

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I+   Q G   +   +FN MR+ +V P+++ + +++ A +       G  +H  + K
Sbjct: 235 TSMISGCVQNGFASDGLLLFNKMRQDNVPPSEYTIATVITACSALFGLHQGRWMHGSVIK 294

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G  S++ +  AL+ MY++ G + +   VF+ +++ D V W  +   +    +P   LR+
Sbjct: 295 QGLMSNSFISAALLDMYVKCGELDHARCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRL 354

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F         PN  T   +L A + L D+  GK +H   +K  L   +VVG +LVDMY K
Sbjct: 355 FLDKRFANIAPNSVTTATVLSASAQLRDLSLGKSIHGLAVKLGLVEYNVVGNALVDMYAK 414

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
              + +A   F  ++NKD+ A+ ++I+ YA+    + AL  F++M L+G   +  ++ + 
Sbjct: 415 CQAVSEADRIFGRISNKDVVAWNSMISGYAENNMGDDALMLFKQMSLQGSSPDAISVVNA 474

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L+    +  L  G+ +H  AVK   + +++V TAL+ +Y KCG +  A  VF     R++
Sbjct: 475 LSASVCLGDLLIGKSIHGYAVKHAFVSNIYVDTALLNLYNKCGDLLSARRVFDEMNDRNS 534

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            +W  MIGGY   G    ++  F  ML +G  P++I F  +LS CSH G++  GK++F S
Sbjct: 535 VTWCAMIGGYGMQGDSAGSIHLFGEMLKDGVYPNDIAFTSILSTCSHSGMVTAGKRYFDS 594

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + + + ITP++KH+ACM+D+L RAG   +   FI    +  +  VW   L  C  H  ++
Sbjct: 595 MAQHFNITPSMKHYACMVDVLARAGNLEDALEFIDNMPMQADTSVWGAFLHGCELHSRLQ 654

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCS 595
             E+  ++++ L P+    YV  S++  + G W+    +R  +  +G+ K P CS
Sbjct: 655 FAEEAIKRMMVLHPERPDLYVLISNLYTSNGMWDKSLAIRRWMQEKGLVKLPGCS 709



 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/462 (29%), Positives = 237/462 (51%), Gaps = 3/462 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A++VF+ +P+ NVVSW ++++G  ++G     + LF  M+      S+++++TV+  
Sbjct: 216 LECARKVFERIPDRNVVSWTSMISGCVQNGFASDGLLLFNKMRQDNVPPSEYTIATVITA 275

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    +  G+ +H   I+ G   + F+S +L+DMY KCG  D+A  VF  +   D+V W
Sbjct: 276 CSALFGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELDHARCVFDELSYIDLVLW 335

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I    Q G   +A ++F   R +++ PN     +++ A+ +  D   G+SIH +  K
Sbjct: 336 TTMIVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSASAQLRDLSLGKSIHGLAVK 395

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G     +VGNALV MY +   VS   R+F  I+++D V+WN++ S + +    D  L +
Sbjct: 396 LGLVEYNVVGNALVDMYAKCQAVSEADRIFGRISNKDVVAWNSMISGYAENNMGDDALML 455

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QM L+G  P+  + +  L A   L D+  GK +H + +KH+   N  V T+L+++Y+K
Sbjct: 456 FKQMSLQGSSPDAISVVNALSASVCLGDLLIGKSIHGYAVKHAFVSNIYVDTALLNLYNK 515

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L  A   FD + +++   + A+I  Y   G++  ++  F +M  +G+  N+    S 
Sbjct: 516 CGDLLSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIHLFGEMLKDGVYPNDIAFTSI 575

Query: 361 LNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR- 418
           L+ CS    +  G R   S+A        M     +V + A+ G+++DA        ++ 
Sbjct: 576 LSTCSHSGMVTAGKRYFDSMAQHFNITPSMKHYACMVDVLARAGNLEDALEFIDNMPMQA 635

Query: 419 DTASWNMMIGGYVKHGLGEKALEAF-RMMLDEGYVPDEITFV 459
           DT+ W   + G   H   + A EA  RMM+     PD    +
Sbjct: 636 DTSVWGAFLHGCELHSRLQFAEEAIKRMMVLHPERPDLYVLI 677



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 150/509 (29%), Positives = 240/509 (47%), Gaps = 22/509 (4%)

Query: 67  IKAGQVVHAMAIRLGC--ALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
           + A  + H   + LG   A  K LSC     Y+  G   +A  VF     PD  ++GA++
Sbjct: 81  LHARLLTHPQGLLLGSLRARTKLLSC-----YAALGDLASARMVFDGTPRPDAYSYGAML 135

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKP---NQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            CL Q     +A  + + MR     P   + FVL+  ++A   + +   G S+H    K 
Sbjct: 136 WCLVQTERHADAVALHHDMRRRRPCPEAQDDFVLSLALKACIRSAEYSYGRSLHCDAIKV 195

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G  +D  V N+LV MY +   +    +VFE I  ++ VSW ++ S          GL +F
Sbjct: 196 G-GADGFVMNSLVDMYAKAEDLECARKVFERIPDRNVVSWTSMISGCVQNGFASDGLLLF 254

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M      P+  T   ++ ACS+L  +  G+ +H   IK  L  N  +  +L+DMY K 
Sbjct: 255 NKMRQDNVPPSEYTIATVITACSALFGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKC 314

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G L+ A   FD L+  DL  +T +I  Y Q G    AL+ F   R   I  N  T A+ L
Sbjct: 315 GELDHARCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVL 374

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           +  + +  L+ G+ +H +AVK G +    V  ALV MYAKC ++ +A+ +F   + +D  
Sbjct: 375 SASAQLRDLSLGKSIHGLAVKLGLVEYNVVGNALVDMYAKCQAVSEADRIFGRISNKDVV 434

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSS 480
           +WN MI GY ++ +G+ AL  F+ M  +G  PD I+ V  LSA   +G +  GK  H  +
Sbjct: 435 AWNSMISGYAENNMGDDALMLFKQMSLQGSSPDAISVVNALSASVCLGDLLIGKSIHGYA 494

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +K  +     I     ++++  + G          E     N++ W  ++G     G   
Sbjct: 495 VK--HAFVSNIYVDTALLNLYNKCGDLLSARRVFDEMN-DRNSVTWCAMIGGYGMQG--- 548

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISAT 569
               D+   + L  +M  + V+P+DI+ T
Sbjct: 549 ----DSAGSIHLFGEMLKDGVYPNDIAFT 573


>gi|302803813|ref|XP_002983659.1| hypothetical protein SELMODRAFT_328 [Selaginella moellendorffii]
 gi|300148496|gb|EFJ15155.1| hypothetical protein SELMODRAFT_328 [Selaginella moellendorffii]
          Length = 917

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 177/562 (31%), Positives = 316/562 (56%), Gaps = 11/562 (1%)

Query: 8   FKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYI 67
           F +M E + +SWN +++G+A++G   + +HLF  M        KF+  +++ G A    +
Sbjct: 364 FSTMVERDAISWNTIISGHAQAGFCDEAVHLFRRMLAEGITPDKFTFISIIDGTAR---M 420

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127
           +  +++  + +  G  LD FL  +L++M+S+ G    A  +F  +KD D+V W +II+  
Sbjct: 421 QEAKILSELMVESGVELDVFLVSALINMHSRYGNVREARSLFDDMKDRDIVMWTSIISSY 480

Query: 128 DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDT 187
            Q G   +A     LMR   +  N F L + + A         G+ IHA   + GF +  
Sbjct: 481 VQHGSSDDALGCTRLMRLEGLMGNDFTLVTALNACASLTALSEGKLIHAHAIERGFAASP 540

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK 247
            VGNAL++MY + G +    RVF     ++ VSWN + + +   +   + L++F +M L+
Sbjct: 541 AVGNALINMYAKCGCLEEADRVFHQCG-KNLVSWNTIAAAYVQRDKWREALQLFQEMQLE 599

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           G K +  +F+ +L  CSS S+   G+++H   ++  ++ +H+V T+L++MY  S  L++A
Sbjct: 600 GLKADKVSFVTVLNGCSSASE---GRKIHNILLETGMESDHIVSTALLNMYTASKSLDEA 656

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN---GC 364
              F  +  +D+ ++ A+I   A+ G +  A++ F++M+LEG+  ++ +  + LN   G 
Sbjct: 657 SRIFSRMEFRDIVSWNAMIAGKAEHGLSREAIQMFQRMQLEGVAPDKISFVTVLNAFSGS 716

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
           SP ++L   RL+  +    G+  D  V  A+V+M+ + G + +A   F+    RD ASWN
Sbjct: 717 SP-SSLKQARLVEKLISDQGYETDTIVGNAIVSMFGRSGRLAEARRAFERIRERDAASWN 775

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
           +++  + +HG  E+AL+ FR M  E   PD IT V VLSACSH GLIEEG  HF+S+ + 
Sbjct: 776 VIVTAHAQHGEVEQALKLFRRMQQESSRPDSITLVSVLSACSHGGLIEEGYHHFTSMGRE 835

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEK 544
           +GI  + +H+ C++D+L RAG+  + E  + +  +  + ++W  LL AC   G+ +  ++
Sbjct: 836 FGIAGSQEHYGCVVDLLARAGRLDQAEELLRKMPVPASYVLWMTLLSACKVQGDEKRAKR 895

Query: 545 DAEKLLELEPKMESNYVFPSDI 566
             E+++EL+P+  + YV  S +
Sbjct: 896 VGERVMELDPRRPAAYVVLSSV 917



 Score =  278 bits (710), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 164/534 (30%), Positives = 286/534 (53%), Gaps = 9/534 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  VF+S+   + VSWN+LL  +A  G  Q+   +F  MK       + +  TVL G
Sbjct: 53  VEDAVSVFQSLDHPSQVSWNSLLAAFARDGQFQQAFQIFQRMKLQGLAPDRITFVTVLDG 112

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +  G +  G+++H   +  G   +  +  SL+ MY KCG  ++A +VF ++   DVV+W
Sbjct: 113 CSAIGDLSRGKLLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRVFDKLALQDVVSW 172

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I    Q   C EA ++F+ MR S V PN+    + + A         G+ IH+ + +
Sbjct: 173 TSMIMTYVQHDRCVEALELFHRMRPSGVLPNRITYATAISACAHVESMADGKLIHSQVLE 232

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GFESD +V  A+V+MY + G +     VFE + H ++VSWNA+ +    +    + L  
Sbjct: 233 DGFESDVVVSCAIVNMYGKCGSLEDAREVFERMPHPNTVSWNAIVAACTQHGCCVEALWY 292

Query: 241 FYQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           F +M L+ G  P+  TFI IL ACSS + + FG+ LH   ++   D + +VG  ++ MY 
Sbjct: 293 FQRMQLQGGITPDKVTFITILNACSSPATLTFGELLHECILQCGYDTHLIVGNCIMTMYS 352

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
             G +++A   F ++  +D  ++  II+ +AQAG  + A+  FR+M  EGI  ++FT  S
Sbjct: 353 SCGRIDNAAAFFSTMVERDAISWNTIISGHAQAGFCDEAVHLFRRMLAEGITPDKFTFIS 412

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            ++G    A +   ++L  + V++G  LD+F+ +AL+ M+++ G++ +A ++F     RD
Sbjct: 413 IIDG---TARMQEAKILSELMVESGVELDVFLVSALINMHSRYGNVREARSLFDDMKDRD 469

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HF 478
              W  +I  YV+HG  + AL   R+M  EG + ++ T V  L+AC+ +  + EGK  H 
Sbjct: 470 IVMWTSIISSYVQHGSSDDALGCTRLMRLEGLMGNDFTLVTALNACASLTALSEGKLIHA 529

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
            +I++ +  +P + +   +I++  + G   E +    +     N + W  +  A
Sbjct: 530 HAIERGFAASPAVGN--ALINMYAKCGCLEEADRVFHQCG--KNLVSWNTIAAA 579



 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 141/508 (27%), Positives = 260/508 (51%), Gaps = 7/508 (1%)

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           A    I  G+ VH+         D  +  + + MY KCG  ++A+ VF  +  P  V+W 
Sbjct: 13  AKKSAIAEGRFVHSRVEASEFRRDDLVQNATIHMYGKCGCVEDAVSVFQSLDHPSQVSWN 72

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           +++    + G  Q+A +IF  M+   + P++    +++   +  GD   G+ +H  + + 
Sbjct: 73  SLLAAFARDGQFQQAFQIFQRMKLQGLAPDRITFVTVLDGCSAIGDLSRGKLLHGFVLEA 132

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G E + +VG +L+ MY + G V    RVF+ +A QD VSW ++   +  ++   + L +F
Sbjct: 133 GLERNVMVGTSLIKMYGKCGCVEDARRVFDKLALQDVVSWTSMIMTYVQHDRCVEALELF 192

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
           ++M   G  PN  T+   + AC+ +  +  GK +H+  ++   + + VV  ++V+MY K 
Sbjct: 193 HRMRPSGVLPNRITYATAISACAHVESMADGKLIHSQVLEDGFESDVVVSCAIVNMYGKC 252

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE-GIKSNEFTLASC 360
           G LEDA   F+ + + +  ++ AI+ +  Q G    AL  F++M+L+ GI  ++ T  + 
Sbjct: 253 GSLEDAREVFERMPHPNTVSWNAIVAACTQHGCCVEALWYFQRMQLQGGITPDKVTFITI 312

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           LN CS  ATL  G LLH   ++ G+   + V   ++ MY+ CG ID+A A F     RD 
Sbjct: 313 LNACSSPATLTFGELLHECILQCGYDTHLIVGNCIMTMYSSCGRIDNAAAFFSTMVERDA 372

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SWN +I G+ + G  ++A+  FR ML EG  PD+ TF+ ++   + M    +  K  S 
Sbjct: 373 ISWNTIISGHAQAGFCDEAVHLFRRMLAEGITPDKFTFISIIDGTARM----QEAKILSE 428

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +    G+   +   + +I++  R G   E  +   + K   + ++W +++ +   HG+ +
Sbjct: 429 LMVESGVELDVFLVSALINMHSRYGNVREARSLFDDMK-DRDIVMWTSIISSYVQHGSSD 487

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISA 568
            D     +L+ LE  M +++   + ++A
Sbjct: 488 -DALGCTRLMRLEGLMGNDFTLVTALNA 514



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 154/283 (54%), Gaps = 2/283 (0%)

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
           TF+ +L  C+  S +  G+ +H+         + +V  + + MY K GC+EDA   F SL
Sbjct: 4   TFLALLGLCAKKSAIAEGRFVHSRVEASEFRRDDLVQNATIHMYGKCGCVEDAVSVFQSL 63

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
            +    ++ +++ ++A+ G+ + A + F++M+L+G+  +  T  + L+GCS +  L+ G+
Sbjct: 64  DHPSQVSWNSLLAAFARDGQFQQAFQIFQRMKLQGLAPDRITFVTVLDGCSAIGDLSRGK 123

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
           LLH   ++ G   ++ V T+L+ MY KCG ++DA  VF   AL+D  SW  MI  YV+H 
Sbjct: 124 LLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRVFDKLALQDVVSWTSMIMTYVQHD 183

Query: 435 LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHF 494
              +ALE F  M   G +P+ IT+   +SAC+H+  + +GK   S + +  G    +   
Sbjct: 184 RCVEALELFHRMRPSGVLPNRITYATAISACAHVESMADGKLIHSQVLE-DGFESDVVVS 242

Query: 495 ACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
             ++++ G+ G   +    + E    PN + W  ++ AC+ HG
Sbjct: 243 CAIVNMYGKCGSLEDARE-VFERMPHPNTVSWNAIVAACTQHG 284



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 86/168 (51%), Gaps = 2/168 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A R+F  M   ++VSWNA++ G AE G  ++ + +F  M+       K S  TVL  
Sbjct: 653 LDEASRIFSRMEFRDIVSWNAMIAGKAEHGLSREAIQMFQRMQLEGVAPDKISFVTVLNA 712

Query: 61  FANS--GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
           F+ S    +K  ++V  +    G   D  +  ++V M+ + G    A + F RI++ D  
Sbjct: 713 FSGSSPSSLKQARLVEKLISDQGYETDTIVGNAIVSMFGRSGRLAEARRAFERIRERDAA 772

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
           +W  I+T   Q G  ++A K+F  M++ S +P+   L S++ A +  G
Sbjct: 773 SWNVIVTAHAQHGEVEQALKLFRRMQQESSRPDSITLVSVLSACSHGG 820


>gi|15227623|ref|NP_178437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216181|sp|Q9ZQ74.1|PP146_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03380, mitochondrial; Flags: Precursor
 gi|4335760|gb|AAD17437.1| unknown protein [Arabidopsis thaliana]
 gi|330250600|gb|AEC05694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 195/598 (32%), Positives = 310/598 (51%), Gaps = 6/598 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF  +PE +   W  +L  Y  + +  +V+ L+  +     ++     S  LK    
Sbjct: 95  ARLVFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTE 154

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G+ +H   +++  + D  +   L+DMY+KCG   +A KVF  I   +VV W ++
Sbjct: 155 LQDLDNGKKIHCQLVKVP-SFDNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSM 213

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    +   C+E   +FN MRE++V  N++   +L+ A T+      G+  H  + K G 
Sbjct: 214 IAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGI 273

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E  + +  +L+ MY++ G +S   RVF   +H D V W A+   +    S ++ L +F +
Sbjct: 274 ELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQK 333

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL-DGNHVVGTSLVDMYDKSG 302
           M     KPN  T   +L  C  + ++  G+ +H  +IK  + D N  V  +LV MY K  
Sbjct: 334 MKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGIWDTN--VANALVHMYAKCY 391

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
              DA   F+  + KD+ A+ +II+ ++Q G    AL  F +M  E +  N  T+AS  +
Sbjct: 392 QNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFS 451

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLD--MFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
            C+ + +LA G  LH+ +VK G L    + V TAL+  YAKCG    A  +F     ++T
Sbjct: 452 ACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNT 511

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            +W+ MIGGY K G    +LE F  ML +   P+E TF  +LSAC H G++ EGKK+FSS
Sbjct: 512 ITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACGHTGMVNEGKKYFSS 571

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + K Y  TP+ KH+ CM+D+L RAG+  +  + I +  + P+   +   L  C  H   +
Sbjct: 572 MYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHGCGMHSRFD 631

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           L E   +K+L+L P   S YV  S++ A+ GRWN    VR L+  +G+ K    S +E
Sbjct: 632 LGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWNQAKEVRNLMKQRGLSKIAGHSTME 689



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 108/396 (27%), Positives = 187/396 (47%), Gaps = 15/396 (3%)

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H V+   G   D  +   LVS+Y   G       VF+ I   D   W  +   +   +  
Sbjct: 64  HGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKES 123

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK-HSLDGNHVVGTS 293
            + ++++  ++  GF+ +   F   LKAC+ L D+  GK++H   +K  S D  +VV T 
Sbjct: 124 VEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIHCQLVKVPSFD--NVVLTG 181

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           L+DMY K G ++ A   F+ +  +++  +T++I  Y +    E  L  F +MR   +  N
Sbjct: 182 LLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGN 241

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
           E+T  + +  C+ ++ L  G+  H   VK+G  L   + T+L+ MY KCG I +A  VF 
Sbjct: 242 EYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFN 301

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
             +  D   W  MI GY  +G   +AL  F+ M      P+ +T   VLS C  +  +E 
Sbjct: 302 EHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLEL 361

Query: 474 GKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
           G+  H  SIK   GI  T    A ++ +  +  +  + + ++ E +   + + W +++  
Sbjct: 362 GRSVHGLSIK--VGIWDTNVANA-LVHMYAKCYQNRDAK-YVFEMESEKDIVAWNSIISG 417

Query: 533 CSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISA 568
            S +G+I        + L L  +M S  V P+ ++ 
Sbjct: 418 FSQNGSI-------HEALFLFHRMNSESVTPNGVTV 446



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 106/218 (48%), Gaps = 4/218 (1%)

Query: 258 VILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK 317
           ++L  C+++  +   +Q H     + L G+  + T LV +Y   G  +DA + FD +   
Sbjct: 49  LLLSKCTNIDSL---RQSHGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEP 105

Query: 318 DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLH 377
           D + +  ++  Y    E+   +K +  +   G + ++   +  L  C+ +  L NG+ +H
Sbjct: 106 DFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIH 165

Query: 378 SIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGE 437
              VK     D  V T L+ MYAKCG I  A  VF    LR+   W  MI GYVK+ L E
Sbjct: 166 CQLVKVPS-FDNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCE 224

Query: 438 KALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           + L  F  M +   + +E T+  ++ AC+ +  + +GK
Sbjct: 225 EGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGK 262


>gi|449453904|ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 185/599 (30%), Positives = 314/599 (52%), Gaps = 40/599 (6%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F   P  N ++W++L++GY ++G   + +  F  M    +K S+++L +VL+  + 
Sbjct: 87  ARKLFNETPIKNSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACST 146

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD-PDVVAWGA 122
              +  G+++H  AI++    + F++  LVDMYSKC     A  +F+ + D  + V W A
Sbjct: 147 LSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTA 206

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           ++T   Q G   +A + F  MR   ++ N F   S++ A T       G  +H  I   G
Sbjct: 207 MLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSG 266

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F  +  V +ALV MY + G ++    + + +   D V WN++      +   ++ L +F+
Sbjct: 267 FGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFH 326

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M  +  + +  T+  +LK+ +S  ++  G+ +H+ TIK   D    V  +LVDMY K G
Sbjct: 327 KMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKTVSNALVDMYAKQG 386

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            L  A   F+ + +KD+ ++T+++T Y   G  E AL+ F  MR   +  ++F +A   +
Sbjct: 387 NLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQFVVACVFS 446

Query: 363 GCSPVATLANGRLLHSIAVKT--GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
            C+ +  +  GR +H+  +K+  G LL      +L+ MYAKCG ++DA  VF     R+ 
Sbjct: 447 ACAELTVIEFGRQVHANFIKSSAGSLLS--AENSLITMYAKCGCLEDAIRVFDSMETRNV 504

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SW  +I GY ++GL                                   +E G+ +F S
Sbjct: 505 ISWTAIIVGYAQNGL-----------------------------------VETGQSYFES 529

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           ++K+YGI P   H+ACMID+LGRAGK  E E+ +    + P+A +W++LL AC  HGN+E
Sbjct: 530 MEKVYGIKPASDHYACMIDLLGRAGKINEAEHLLNRMDVEPDATIWKSLLSACRVHGNLE 589

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           L E+  + L++LEP     YV  S++ +  GRW D + +R  + + GI KEP  SWIE+
Sbjct: 590 LGERAGKNLIKLEPSNSLPYVLLSNMFSVAGRWEDAAHIRRAMKTMGINKEPGYSWIEM 648



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 116/357 (32%), Positives = 183/357 (51%), Gaps = 35/357 (9%)

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY-----------ES 233
           S  L  N L+S   +NGRV    ++F+ + ++D  +WN + S + +            E+
Sbjct: 35  SSNLDSNQLLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNET 94

Query: 234 PD--------------------QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGK 273
           P                     +GLR F QM   G KP+  T   +L+ACS+LS +  GK
Sbjct: 95  PIKNSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGK 154

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN-KDLFAYTAIITSYAQA 332
            +H + IK  L+ N  V T LVDMY K  CL +A   F SL + K+   +TA++T YAQ 
Sbjct: 155 MIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQN 214

Query: 333 GEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS 392
           GE+  A++CF++MR +G++SN FT  S L  C+ ++  A GR +H   + +G   +++V 
Sbjct: 215 GESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQ 274

Query: 393 TALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV 452
           +ALV MYAKCG +  A  +     + D   WN MI G V HG  E+AL  F  M +    
Sbjct: 275 SALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIR 334

Query: 453 PDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFT 508
            D+ T+  VL + +    ++ G+  H  +IK  +    T+ +   ++D+  + G  +
Sbjct: 335 IDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKTVSN--ALVDMYAKQGNLS 389



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 136/496 (27%), Positives = 234/496 (47%), Gaps = 9/496 (1%)

Query: 85  DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMR 144
           DK+    ++  Y+  G    A K+F      + + W ++++   + GC  E  + F+ M 
Sbjct: 67  DKYTWNIMISAYANLGNLVEARKLFNETPIKNSITWSSLVSGYCKNGCEVEGLRQFSQMW 126

Query: 145 ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVS 204
               KP+Q+ L S++RA +       G+ IH    K   E++  V   LV MY +   + 
Sbjct: 127 SDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLL 186

Query: 205 YGSRVFEAIA-HQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKAC 263
               +F ++   ++ V W A+ + +       + ++ F +M  +G + N  TF  IL AC
Sbjct: 187 EAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTAC 246

Query: 264 SSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYT 323
           +S+S   FG+Q+H   I      N  V ++LVDMY K G L  A +  D++   D+  + 
Sbjct: 247 TSISAYAFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWN 306

Query: 324 AIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKT 383
           ++I      G  E AL  F KM    I+ ++FT  S L   +    L  G  +HS+ +KT
Sbjct: 307 SMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKT 366

Query: 384 GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF 443
           G      VS ALV MYAK G++  A  VF     +D  SW  ++ GYV +G  EKAL+ F
Sbjct: 367 GFDACKTVSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLF 426

Query: 444 RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILG 502
             M       D+     V SAC+ + +IE G++ H + IK   G   + ++   +I +  
Sbjct: 427 CDMRTARVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAEN--SLITMYA 484

Query: 503 RAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE---KDAEKLLELEPKMESN 559
           + G   +    + ++  T N + W  ++   + +G +E  +   +  EK+  ++P  + +
Sbjct: 485 KCGCLEDAIR-VFDSMETRNVISWTAIIVGYAQNGLVETGQSYFESMEKVYGIKPASD-H 542

Query: 560 YVFPSDISATQGRWND 575
           Y    D+    G+ N+
Sbjct: 543 YACMIDLLGRAGKINE 558


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 187/624 (29%), Positives = 318/624 (50%), Gaps = 71/624 (11%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           + KS+       +N L+N Y++ G+     H+F    D   + + FS +T+L  ++ SG 
Sbjct: 31  IIKSLTNPETFLYNNLINAYSKLGNITYARHVF----DKMPQPNSFSWNTMLSAYSKSGD 86

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +   Q                                   ++F  + + D V+W ++I+ 
Sbjct: 87  LSTMQ-----------------------------------EIFSIMPNRDGVSWNSLISG 111

Query: 127 LDQQGCCQEAAKIFN-LMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
               G   EA K +N +M++  +  N+   ++++   +  G    G  IH  I K+GF +
Sbjct: 112 YVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGA 171

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIA------------------------------- 214
              VG++LV MY + G VS  S+VF+ +                                
Sbjct: 172 YVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMK 231

Query: 215 HQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ 274
            +DS+SW  + +         + + +F  M  +G   +  TF  +L AC  L  +  GK+
Sbjct: 232 ERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKE 291

Query: 275 LHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGE 334
           +H   I+   + N  VG++LVDMY K   +  A   F  +ANK++ ++TA++  Y Q G 
Sbjct: 292 IHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGF 351

Query: 335 AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA 394
           +E A++ F  M+  GI+ ++FTL S ++ C+ +A+L  G   H  A+ +G +  + VS A
Sbjct: 352 SEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNA 411

Query: 395 LVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD 454
           L+ +Y KCGSI+D+  +F   + RD  SW  ++ GY + G   + ++ F  ML +G  PD
Sbjct: 412 LITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPD 471

Query: 455 EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFI 514
            +TF+ VLSACS  GL+E G+++F S+ K +GI P   H+ CMID+ GRAG+  E +NFI
Sbjct: 472 AVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFI 531

Query: 515 TETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWN 574
            +   +P+++ W  LL +C  +GN E+ +  AE LLEL+P+  + Y+  S I A +G+W+
Sbjct: 532 NKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWS 591

Query: 575 DFSGVRALLSSQGIKKEPSCSWIE 598
           + + +R  +  +G +KEP  SWI+
Sbjct: 592 NVAQLRRGMREKGARKEPGFSWIK 615



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 115/440 (26%), Positives = 217/440 (49%), Gaps = 37/440 (8%)

Query: 5   KRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLKGFAN 63
           + +F  MP  + VSWN+L++GY   G   + +  + SM KD     ++ + ST+L   ++
Sbjct: 91  QEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSS 150

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKV--------------- 108
            G +  G+ +H   ++ G     F+  SLVDMY+K GL   A +V               
Sbjct: 151 QGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTM 210

Query: 109 ----------------FYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQ 152
                           F+ +K+ D ++W  +IT L Q G   EA  +F  MR+  +  +Q
Sbjct: 211 ITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQ 270

Query: 153 FVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEA 212
           +   S++ A       + G+ IH +I + G+  +  VG+ALV MY +   V Y   VF+ 
Sbjct: 271 YTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKR 330

Query: 213 IAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFG 272
           +A+++ VSW A+   +      ++ +R+F  M   G +P+  T   ++ +C++L+ +  G
Sbjct: 331 MANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEG 390

Query: 273 KQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQA 332
            Q H   +   L     V  +L+ +Y K G +ED+   FD ++ +D  ++TA+++ YAQ 
Sbjct: 391 AQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQF 450

Query: 333 GEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL---DM 389
           G+A   +  F +M ++G+K +  T  + L+ CS    +  G+      +K   ++   D 
Sbjct: 451 GKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDH 510

Query: 390 FVSTALVAMYAKCGSIDDAE 409
           +  T ++ ++ + G +++A+
Sbjct: 511 Y--TCMIDLFGRAGRLEEAK 528



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 123/485 (25%), Positives = 205/485 (42%), Gaps = 98/485 (20%)

Query: 164 ETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNA 223
           ET +Q   + +H +I K     +T + N L++ Y + G ++Y   VF+ +   +S SWN 
Sbjct: 17  ETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWNT 76

Query: 224 LFSRFQD-------------------------------YESPDQGLRIFYQMLLKG-FKP 251
           + S +                                 Y S  + ++ +  M+  G    
Sbjct: 77  MLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNL 136

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK----------- 300
           N  TF  +L   SS   V  G+Q+H   +K        VG+SLVDMY K           
Sbjct: 137 NRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVF 196

Query: 301 --------------------SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALK 340
                               SG ++D+   F  +  +D  ++T +IT   Q G    A+ 
Sbjct: 197 DEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMD 256

Query: 341 CFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYA 400
            FR MR EG+  +++T  S L  C  +  L  G+ +H++ +++G+  ++FV +ALV MY 
Sbjct: 257 LFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYC 316

Query: 401 KCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVV 460
           KC S+  AEAVFK  A ++  SW  M+ GY ++G  E+A+  F  M   G  PD+ T   
Sbjct: 317 KCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGS 376

Query: 461 VLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK-- 518
           V+S+C+++  +EEG + F     + G+   I     +I + G+ G   +      E    
Sbjct: 377 VISSCANLASLEEGAQ-FHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFR 435

Query: 519 --------------------------------LTPNALVWENLLGACSWHGNIELDEKDA 546
                                           L P+A+ +  +L ACS  G +E  ++  
Sbjct: 436 DEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYF 495

Query: 547 EKLLE 551
           E +L+
Sbjct: 496 ESMLK 500



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 172/337 (51%), Gaps = 2/337 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           +KR+F  M E + +SW  ++ G  ++G   + M LF  M+       +++  +VL     
Sbjct: 223 SKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGG 282

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +K G+ +H + IR G   + F+  +LVDMY KC     A  VF R+ + +VV+W A+
Sbjct: 283 LRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAM 342

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    Q G  +EA ++F  M+ + ++P+ F L S++ +         G   H      G 
Sbjct: 343 LVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGL 402

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            S   V NAL+++Y + G +   +++F+ ++ +D VSW AL S +  +   ++ + +F +
Sbjct: 403 ISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFER 462

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK-HSLDGNHVVGTSLVDMYDKSG 302
           ML++G KP+  TFI +L ACS    V  G+Q     +K H +       T ++D++ ++G
Sbjct: 463 MLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAG 522

Query: 303 CLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMA 338
            LE+A    + +  + D   +  +++S    G  E+ 
Sbjct: 523 RLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEIG 559



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 117/279 (41%), Gaps = 63/279 (22%)

Query: 261 KACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLF 320
           K C    +    K+LH   IK   +    +  +L++ Y K G +  A   FD +   + F
Sbjct: 13  KLCCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSF 72

Query: 321 AYTAIITSYAQAGEAEM-------------------------------ALKCFRKMRLEG 349
           ++  ++++Y+++G+                                  A+K +  M  +G
Sbjct: 73  SWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDG 132

Query: 350 IKS-NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAK------- 401
           + + N  T ++ L   S    +  GR +H   VK G    +FV ++LV MYAK       
Sbjct: 133 VLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVA 192

Query: 402 ------------------------CGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGE 437
                                    G + D++ +F G   RD+ SW  MI G +++GL  
Sbjct: 193 SQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEA 252

Query: 438 KALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
           +A++ FR M  EG   D+ TF  VL+AC  +  ++EGK+
Sbjct: 253 EAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKE 291



 Score = 42.7 bits (99), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 4/120 (3%)

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C         + LH + +K+    + F+   L+  Y+K G+I  A  VF      ++ SW
Sbjct: 15  CCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSW 74

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N M+  Y K G      E F +M +     D +++  ++S     G + E  K ++S+ K
Sbjct: 75  NTMLSAYSKSGDLSTMQEIFSIMPNR----DGVSWNSLISGYVCYGSVVEAVKTYNSMMK 130



 Score = 42.4 bits (98), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 4/128 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E + ++F  M   + VSW AL++GYA+ G   + + LF  M     K    +   VL  
Sbjct: 422 IEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSA 481

Query: 61  FANSGYIKAG-QVVHAMAIRLG-CALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDV 117
            + +G ++ G Q   +M    G        +C ++D++ + G  + A     ++   PD 
Sbjct: 482 CSRAGLVERGQQYFESMLKDHGIIPFSDHYTC-MIDLFGRAGRLEEAKNFINKMPFSPDS 540

Query: 118 VAWGAIIT 125
           + W  +++
Sbjct: 541 IGWATLLS 548


>gi|414869047|tpg|DAA47604.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 694

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 190/601 (31%), Positives = 321/601 (53%), Gaps = 5/601 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+RVF  +P  +  SWN+LL  +  +G  +    L  +M       S F+L + L+  A 
Sbjct: 44  ARRVFDEIPHPDAASWNSLLAAHVAAGAHRDAWRLLRAMHARGLAASTFALGSALRSAAA 103

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +   + G  + + ++R G A + F + +L+D+Y+KCG   +A +VF  +   ++V+W AI
Sbjct: 104 ARRPELGAQLQSFSVRCGLADNVFPASALLDVYAKCGRLGDARRVFDGMPVRNIVSWNAI 163

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I          EA ++F  M+     P+      L+              +H  I KYG 
Sbjct: 164 IAGYTDSRKPAEAMELFLEMQRVGSVPDGTTFAVLLATIAGPRWYSLMRQLHGKIVKYGS 223

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
               +  NA ++ Y +   ++   ++F+ I  +D +SWN++   +  +   D+ +R F +
Sbjct: 224 ALGLVALNAAITAYSQCDALADSRKIFDGIESRDLISWNSMLGAYAYHGLDDEAMRFFVR 283

Query: 244 MLLK-GFKPNMCTFIVILKACSSLS-DVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK- 300
           M+ + G +P+M +F   +  CS    D   G+ +H+  IK  L+G   V  +++ MY + 
Sbjct: 284 MMRESGIQPDMYSFTSAISVCSEHGCDDQQGRSIHSLVIKFGLEGVTPVCNAMIAMYTRF 343

Query: 301 -SGCL-EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
              C+ EDA   F SL  KD  ++ +++T Y+  G +  ALK FR MR E I+++EF L+
Sbjct: 344 ADNCMMEDAYNCFSSLVFKDAVSWNSMLTGYSHHGLSSDALKFFRCMRAENIRTDEFGLS 403

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           + L  CS +A L  GR +HS+ V++G   + FVS++L+ MY+KCG + DA   F+ +   
Sbjct: 404 AALRSCSDLAVLRLGRQVHSLVVQSGFASNDFVSSSLIFMYSKCGVLGDARKSFEEADKS 463

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
            +  WN M+ GY +HG  +   + F  MLD     D +TFV +++A SH GL++EG +  
Sbjct: 464 SSVPWNSMMFGYAQHGQAQTVTDLFNEMLDLEVPLDHVTFVALITAYSHGGLVDEGSEIL 523

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           ++++  Y I   ++H+AC +D+ GRAG+  + +  I      P+A+VW  LLGAC  HGN
Sbjct: 524 NTMETRYKIPMRMEHYACGVDLYGRAGQLDKAKELIESMPFQPDAIVWMTLLGACRIHGN 583

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           +EL    A  L   EP+  S YV  S + +  G W+D + V+ ++ ++ + K P  SWIE
Sbjct: 584 MELASDVARHLFVAEPRQHSTYVLLSSMYSGLGMWSDRATVQKVMRNRALSKIPGWSWIE 643

Query: 599 V 599
           V
Sbjct: 644 V 644



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 105/227 (46%), Gaps = 2/227 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A   F S+   + VSWN++L GY+  G     +  F  M+    +  +F LS  L+ 
Sbjct: 349 MEDAYNCFSSLVFKDAVSWNSMLTGYSHHGLSSDALKFFRCMRAENIRTDEFGLSAALRS 408

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ++   ++ G+ VH++ ++ G A + F+S SL+ MYSKCG+  +A K F        V W
Sbjct: 409 CSDLAVLRLGRQVHSLVVQSGFASNDFVSSSLIFMYSKCGVLGDARKSFEEADKSSSVPW 468

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG-ESIHAVIC 179
            +++    Q G  Q    +FN M +  V  +     +L+ A +  G    G E ++ +  
Sbjct: 469 NSMMFGYAQHGQAQTVTDLFNEMLDLEVPLDHVTFVALITAYSHGGLVDEGSEILNTMET 528

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-DSVSWNALF 225
           +Y            V +Y   G++     + E++  Q D++ W  L 
Sbjct: 529 RYKIPMRMEHYACGVDLYGRAGQLDKAKELIESMPFQPDAIVWMTLL 575


>gi|356557931|ref|XP_003547263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Glycine max]
          Length = 764

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 188/600 (31%), Positives = 307/600 (51%), Gaps = 3/600 (0%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           ++A++VF  MPE NVV W +++  Y+ +G   +   LF  M+    + S  ++ ++L G 
Sbjct: 121 DVARKVFDFMPERNVVPWTSIIGCYSRTGRVPEAFSLFDEMRRQGIQPSSVTMLSLLFGV 180

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           +   ++   Q +H  AI  G   D  LS S++ MY KC   + + K+F  +   D+V+W 
Sbjct: 181 SELAHV---QCLHGSAILYGFMSDINLSNSMLSMYGKCRNIEYSRKLFDYMDQRDLVSWN 237

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           ++++   Q G   E   +   MR    +P+     S++      G+ + G  +H  I + 
Sbjct: 238 SLVSAYAQIGYICEVLLLLKTMRIQGFEPDPQTFGSVLSVAASRGELKLGRCLHGQILRT 297

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
            F+ D  V  +L+ MY++ G +    R+FE    +D V W A+ S      S D+ L +F
Sbjct: 298 CFDLDAHVETSLIVMYLKGGNIDIAFRMFERSLDKDVVLWTAMISGLVQNGSADKALAVF 357

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            QML  G K +  T   ++ AC+ L     G  +H +  +H L  +     SLV M+ K 
Sbjct: 358 RQMLKFGVKSSTATMASVITACAQLGSYNLGTSVHGYMFRHELPMDIATQNSLVTMHAKC 417

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G L+ + + FD +  ++L ++ A+IT YAQ G    AL  F +MR +    +  T+ S L
Sbjct: 418 GHLDQSSIVFDKMNKRNLVSWNAMITGYAQNGYVCKALFLFNEMRSDHQTPDSITIVSLL 477

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
            GC+    L  G+ +HS  ++ G    + V T+LV MY KCG +D A+  F      D  
Sbjct: 478 QGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCGDLDIAQRCFNQMPSHDLV 537

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SW+ +I GY  HG GE AL  +   L+ G  P+ + F+ VLS+CSH GL+E+G   + S+
Sbjct: 538 SWSAIIVGYGYHGKGETALRFYSKFLESGMKPNHVIFLSVLSSCSHNGLVEQGLNIYESM 597

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
            + +GI P ++H AC++D+L RAG+  E  N   +    P   V   +L AC  +GN EL
Sbjct: 598 TRDFGIAPNLEHHACVVDLLSRAGRVEEAYNLYKKKFSDPVLDVLGIILDACRANGNNEL 657

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
            +  A  +L L+P    N+V  +   A+  +W +       + S G+KK P  S+I++ G
Sbjct: 658 GDTIANDILMLKPMDAGNFVQLAHCYASINKWEEVGEAWTHMRSLGLKKIPGWSFIDIHG 717



 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 162/562 (28%), Positives = 281/562 (50%), Gaps = 12/562 (2%)

Query: 5   KRVFKSMPE-----LNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           KR   S+P        + S+NA++N ++  G  ++V+  + SM         ++  ++LK
Sbjct: 18  KRYVVSLPHPSSASATINSFNAIINHHSSQGAHRQVLATYASMLKTHVPSDAYTFPSLLK 77

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             ++      G  +H   +  G +LD +++ SL++ Y+K G AD A KVF  + + +VV 
Sbjct: 78  ACSSLNLFSLGLSLHQRILVSGLSLDAYIASSLINFYAKFGFADVARKVFDFMPERNVVP 137

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W +II C  + G   EA  +F+ MR   ++P+   + SL+   +E    +C   +H    
Sbjct: 138 WTSIIGCYSRTGRVPEAFSLFDEMRRQGIQPSSVTMLSLLFGVSELAHVQC---LHGSAI 194

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
            YGF SD  + N+++SMY +   + Y  ++F+ +  +D VSWN+L S +       + L 
Sbjct: 195 LYGFMSDINLSNSMLSMYGKCRNIEYSRKLFDYMDQRDLVSWNSLVSAYAQIGYICEVLL 254

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +   M ++GF+P+  TF  +L   +S  ++  G+ LH   ++   D +  V TSL+ MY 
Sbjct: 255 LLKTMRIQGFEPDPQTFGSVLSVAASRGELKLGRCLHGQILRTCFDLDAHVETSLIVMYL 314

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G ++ A   F+   +KD+  +TA+I+   Q G A+ AL  FR+M   G+KS+  T+AS
Sbjct: 315 KGGNIDIAFRMFERSLDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKSSTATMAS 374

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            +  C+ + +   G  +H    +    +D+    +LV M+AKCG +D +  VF     R+
Sbjct: 375 VITACAQLGSYNLGTSVHGYMFRHELPMDIATQNSLVTMHAKCGHLDQSSIVFDKMNKRN 434

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SWN MI GY ++G   KAL  F  M  +   PD IT V +L  C+  G +  GK   S
Sbjct: 435 LVSWNAMITGYAQNGYVCKALFLFNEMRSDHQTPDSITIVSLLQGCASTGQLHLGKWIHS 494

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
            + +  G+ P I     ++D+  + G     +    +   + + + W  ++    +HG  
Sbjct: 495 FVIR-NGLRPCILVDTSLVDMYCKCGDLDIAQRCFNQMP-SHDLVSWSAIIVGYGYHGKG 552

Query: 540 ELDEKDAEKLLELEPKMESNYV 561
           E   +   K   LE  M+ N+V
Sbjct: 553 ETALRFYSKF--LESGMKPNHV 572



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 214/414 (51%), Gaps = 1/414 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E ++++F  M + ++VSWN+L++ YA+ G   +V+ L  +M+    +    +  +VL  
Sbjct: 218 IEYSRKLFDYMDQRDLVSWNSLVSAYAQIGYICEVLLLLKTMRIQGFEPDPQTFGSVLSV 277

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+ G +K G+ +H   +R    LD  +  SL+ MY K G  D A ++F R  D DVV W
Sbjct: 278 AASRGELKLGRCLHGQILRTCFDLDAHVETSLIVMYLKGGNIDIAFRMFERSLDKDVVLW 337

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I+ L Q G   +A  +F  M +  VK +   + S++ A  + G    G S+H  + +
Sbjct: 338 TAMISGLVQNGSADKALAVFRQMLKFGVKSSTATMASVITACAQLGSYNLGTSVHGYMFR 397

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +    D    N+LV+M+ + G +   S VF+ +  ++ VSWNA+ + +       + L +
Sbjct: 398 HELPMDIATQNSLVTMHAKCGHLDQSSIVFDKMNKRNLVSWNAMITGYAQNGYVCKALFL 457

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M      P+  T + +L+ C+S   +  GK +H+  I++ L    +V TSLVDMY K
Sbjct: 458 FNEMRSDHQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCK 517

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L+ A   F+ + + DL +++AII  Y   G+ E AL+ + K    G+K N     S 
Sbjct: 518 CGDLDIAQRCFNQMPSHDLVSWSAIIVGYGYHGKGETALRFYSKFLESGMKPNHVIFLSV 577

Query: 361 LNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
           L+ CS    +  G  +  S+    G   ++     +V + ++ G +++A  ++K
Sbjct: 578 LSSCSHNGLVEQGLNIYESMTRDFGIAPNLEHHACVVDLLSRAGRVEEAYNLYK 631


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 182/523 (34%), Positives = 293/523 (56%), Gaps = 2/523 (0%)

Query: 80  LGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKI 139
           +G   D  LS  L+ MY KCG    A  VF R+   +VV+W A++    Q G   E+  +
Sbjct: 1   MGFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLL 60

Query: 140 FNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYME 199
           F+ M  S VKPN F  ++ ++A         G  IH +  K GF+   +VGN+++ MY +
Sbjct: 61  FSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSK 120

Query: 200 NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVI 259
            GR++  + +FE +  ++ +SWNA+ + +      ++ L +F +M   G   +  TF   
Sbjct: 121 CGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTST 180

Query: 260 LKACSSLSDVGFGKQLHAHTIKHSL--DGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK 317
           LKACS L  +  G Q+HA  I        N  V  +L+D+Y K G L  A   F  +  K
Sbjct: 181 LKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEK 240

Query: 318 DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLH 377
            + ++TA+I  YAQ G    +++ FR++R   I+ + F L+S +   +  A +  G+ +H
Sbjct: 241 HVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMH 300

Query: 378 SIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGE 437
           + A+K    +D+ V  +++ MY KCG I++AE +F     R+  SW +MI GY KHGLG+
Sbjct: 301 AFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGK 360

Query: 438 KALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACM 497
           +A+  F  M  +   PD++T++ VL  CSH GL+E+G+++FS +   +GI   ++H+ACM
Sbjct: 361 EAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACM 420

Query: 498 IDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKME 557
           +D+LGRAG+  E +N +    L  N  +W+ LL AC  HG++EL ++    LL L+ +  
Sbjct: 421 VDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELGKEVGGILLRLDSENP 480

Query: 558 SNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
            NYV  S+I A  G W +   +R L+ S+ +KKE   SW+E+D
Sbjct: 481 VNYVMMSNIYADAGYWKECERIRELVKSKKLKKEAGRSWVEID 523



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 114/438 (26%), Positives = 211/438 (48%), Gaps = 16/438 (3%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           VF  M + NVVSW AL+ G+ ++G+  + + LF  M     K + F+ ST LK       
Sbjct: 29  VFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMGLSGVKPNDFTFSTNLKACGLLNG 88

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +  G+ +H + ++ G  +   +  S++DMYSKCG  + A  +F  +   ++++W A+I  
Sbjct: 89  LDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVMPVRNLISWNAMIAG 148

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF--E 184
               G C++A  +F  M+E     ++F  TS ++A ++ G  + G  IHA +   GF   
Sbjct: 149 YTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLYS 208

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
            +T V  AL+ +Y++ G++    RVF  I  +  +SW AL   +    +  + + +F Q+
Sbjct: 209 VNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQL 268

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
                + +      ++   +  + V  GKQ+HA  IK     +  V  S++DMY K G +
Sbjct: 269 RESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSGVDISVCNSILDMYLKCGMI 328

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
            +A   F  +  +++ ++T +IT Y + G  + A++ F +M+L+  + ++ T  + L GC
Sbjct: 329 NEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGC 388

Query: 365 SPVATLANG-----RL--LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           S    +  G     RL   H I  +  H         +V +  + G + +A+ +     L
Sbjct: 389 SHSGLVEKGQEYFSRLCSYHGIKARVEHY------ACMVDLLGRAGRLKEAKNLVDSMPL 442

Query: 418 R-DTASWNMMIGGYVKHG 434
             +   W  ++     HG
Sbjct: 443 EANVGIWQTLLSACRVHG 460



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 123/226 (54%), Gaps = 2/226 (0%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           +A+RVF  + E +V+SW AL+ GYA+ G+  + M LF  +++   +   F LS+++  FA
Sbjct: 229 MARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFA 288

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           +   ++ G+ +HA AI++   +D  +  S++DMY KCG+ + A ++F  +   +V++W  
Sbjct: 289 DFALVQQGKQMHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTV 348

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY- 181
           +IT   + G  +EA ++F+ M+  S +P+     +++   + +G    G+   + +C Y 
Sbjct: 349 MITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYH 408

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS-WNALFS 226
           G ++       +V +    GR+     + +++  + +V  W  L S
Sbjct: 409 GIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLS 454


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 188/588 (31%), Positives = 310/588 (52%), Gaps = 5/588 (0%)

Query: 15   NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVH 74
            +V++WN  L+ + + G+  + +  F  M +        +   +L   A    ++ G+ +H
Sbjct: 870  DVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIH 929

Query: 75   AMAIRLGCALDKFLSCS--LVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
             + +R G  LD+ +S    L++MY K G    A  VF+++ + D+V+W  +I+     G 
Sbjct: 930  GIVVRSG--LDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGL 987

Query: 133  CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ-RCGESIHAVICKYGFESDTLVGN 191
             + +  +F  +    + P+QF + S++RA +  G        IHA   K G   D+ V  
Sbjct: 988  EECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVST 1047

Query: 192  ALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKP 251
             L+ +Y ++G++     +F      D  SWNA+   +       + LR++  M   G + 
Sbjct: 1048 TLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERA 1107

Query: 252  NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF 311
            N  T     KA   L  +  GKQ+ A  +K   + +  V + ++DMY K G +E A   F
Sbjct: 1108 NQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIF 1167

Query: 312  DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLA 371
            + + + D  A+T +I+   + G+ E AL  +  MRL  ++ +E+T A+ +  CS +  L 
Sbjct: 1168 NEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALE 1227

Query: 372  NGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV 431
             GR +H+  VK     D FV T+LV MYAKCG+I+DA  +FK +     ASWN MI G  
Sbjct: 1228 QGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLA 1287

Query: 432  KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI 491
            +HG  E+AL+ F  M   G  PD +TF+ VLSACSH GL+ E  ++F S++KIYGI P I
Sbjct: 1288 QHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEI 1347

Query: 492  KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551
            +H++C++D L RAG+  E E  I+      +A ++  LL AC    + E  ++ AEKLL 
Sbjct: 1348 EHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLA 1407

Query: 552  LEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            LEP   + YV  S++ A   +W + +  R ++    +KK+P  SW+++
Sbjct: 1408 LEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDL 1455



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 137/547 (25%), Positives = 254/547 (46%), Gaps = 44/547 (8%)

Query: 4    AKRVFKSMPEL--NVVSWNALLNGYAESG-DGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
            A+++F + P+   ++V+WNA+L+ +A+   DG    HLF  ++      ++ +L+ V K 
Sbjct: 680  ARKLFDTTPDTSRDLVTWNAILSAHADKARDG---FHLFRLLRRSFVSATRHTLAPVFKM 736

Query: 61   FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
               S    A + +H  A+++G   D F++ +LV++Y+K G    A  +F  +   DVV W
Sbjct: 737  CLLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLW 796

Query: 121  GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
              ++      G   EA  +F+    + ++P+   L +L R      +             
Sbjct: 797  NVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTLCTLARVVKSKQN------------- 843

Query: 181  YGFESDTLVGNALVSMYMENGRVSYGSRVF---EAIAHQDSVSWNALFSRFQDYESPDQG 237
                         V  +      +YG+++F   +     D ++WN   S F       + 
Sbjct: 844  -------------VLEWQLKQLKAYGTKLFMYDDDDDGSDVIAWNKTLSWFLQRGETWEA 890

Query: 238  LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
            +  F  M+      +  TF+V+L   + L+ +  GKQ+H   ++  LD    VG  L++M
Sbjct: 891  VDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINM 950

Query: 298  YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
            Y K+G +  A   F  +   DL ++  +I+  A +G  E ++  F  +   G+  ++FT+
Sbjct: 951  YVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTV 1010

Query: 358  ASCLNGCSPVATLANG----RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
            AS L  CS   +L  G      +H+ A+K G +LD FVST L+ +Y+K G +++AE +F 
Sbjct: 1011 ASVLRACS---SLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFV 1067

Query: 414  GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
                 D ASWN M+ GY+  G   KAL  + +M + G   ++IT      A   +  +++
Sbjct: 1068 NQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQ 1127

Query: 474  GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
            GK+  + + K  G    +   + ++D+  + G+         E   +P+ + W  ++  C
Sbjct: 1128 GKQIQAVVVK-RGFNLDLFVISGVLDMYLKCGEMESARRIFNEIP-SPDDVAWTTMISGC 1185

Query: 534  SWHGNIE 540
              +G  E
Sbjct: 1186 VENGQEE 1192



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 128/469 (27%), Positives = 210/469 (44%), Gaps = 49/469 (10%)

Query: 56   TVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP 115
            ++L+    +  +  G+  HA  +  G   D+FL+ +L+ MYSKCG   +A K+F    D 
Sbjct: 631  SILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDT 690

Query: 116  --DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES 173
              D+V W AI++    +   ++   +F L+R S V   +  L  + +    +      ES
Sbjct: 691  SRDLVTWNAILSAHADKA--RDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAES 748

Query: 174  IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
            +H    K G + D  V  ALV++Y + GR+     +F+ +  +D V WN +   + D   
Sbjct: 749  LHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGL 808

Query: 234  PDQGLRIFYQMLLKGFKPN---MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
              + L +F +    G +P+   +CT   ++K+  ++ +    KQL A+            
Sbjct: 809  EYEALLLFSEFNRTGLRPDDVTLCTLARVVKSKQNVLEWQL-KQLKAY------------ 855

Query: 291  GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
            GT L  MYD                  D+ A+   ++ + Q GE   A+ CF  M    +
Sbjct: 856  GTKLF-MYDD------------DDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRV 902

Query: 351  KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA--LVAMYAKCGSIDDA 408
              +  T    L+  + +  L  G+ +H I V++G  LD  VS    L+ MY K GS+  A
Sbjct: 903  ACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSG--LDQVVSVGNCLINMYVKTGSVSRA 960

Query: 409  EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
              VF      D  SWN MI G    GL E ++  F  +L  G +PD+ T   VL ACS +
Sbjct: 961  RTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSL 1020

Query: 469  GLIEEGKKHFSSIKKIY------GITPTIKHFACMIDILGRAGKFTEIE 511
            G    G  H ++  +I+      G+         +ID+  ++GK  E E
Sbjct: 1021 G----GGCHLAT--QIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAE 1063



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 138/264 (52%)

Query: 1    MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
            ME A+ +F +    ++ SWNA+++GY  SGD  K + L+  M++  ++ ++ +L+   K 
Sbjct: 1059 MEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKA 1118

Query: 61   FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                  +K G+ + A+ ++ G  LD F+   ++DMY KCG  ++A ++F  I  PD VAW
Sbjct: 1119 AGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAW 1178

Query: 121  GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
              +I+   + G  + A   ++ MR S V+P+++   +LV+A +       G  IHA   K
Sbjct: 1179 TTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVK 1238

Query: 181  YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
                 D  V  +LV MY + G +     +F+        SWNA+      + + ++ L+ 
Sbjct: 1239 LNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQF 1298

Query: 241  FYQMLLKGFKPNMCTFIVILKACS 264
            F +M  +G  P+  TFI +L ACS
Sbjct: 1299 FEEMKSRGVTPDRVTFIGVLSACS 1322



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 115/221 (52%), Gaps = 1/221 (0%)

Query: 1    MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
            ME A+R+F  +P  + V+W  +++G  E+G  +  +  +  M+  + +  +++ +T++K 
Sbjct: 1160 MESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKA 1219

Query: 61   FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +    ++ G+ +HA  ++L CA D F+  SLVDMY+KCG  ++A  +F R     + +W
Sbjct: 1220 CSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASW 1279

Query: 121  GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG-DQRCGESIHAVIC 179
             A+I  L Q G  +EA + F  M+   V P++     ++ A + +G      E+ +++  
Sbjct: 1280 NAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQK 1339

Query: 180  KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS 220
             YG E +    + LV      GR+    +V  ++  + S S
Sbjct: 1340 IYGIEPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASAS 1380


>gi|357124385|ref|XP_003563881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 670

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 197/604 (32%), Positives = 317/604 (52%), Gaps = 10/604 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-----KDMEKKFSKFSLSTVL 58
           A+ +F  MP  NVVS + L++  +  G   +   LF  M     +    + + F+L  ++
Sbjct: 51  ARGLFDEMPHRNVVSCSVLISNVSRLGALCEAFLLFSDMLLSGGRGSYDRPNSFALGALV 110

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
            G A +  I AG  VHA A++ G A D+ ++ +LVDMYSKCG  D++ +VF       VV
Sbjct: 111 SGCARASDIVAGSQVHASAVKFGVAGDESVAGALVDMYSKCGCVDSSWRVFALSPQRSVV 170

Query: 119 AWGAIITCL----DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
           +W ++I CL       G    A  +   M    + P     + +++     G    G+ I
Sbjct: 171 SWTSMIACLVNNDGSSGHRDAALSLLRKMLLLKIWPTNATFSCILKVFDAPGLLPGGKQI 230

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H  + K G E D  +G AL++MY   G V   +++   I H D+ S  +LF  +      
Sbjct: 231 HGCLLKMGTEVDPALGTALIAMYGRCGGVDEIAKLSCRIRH-DAFSRTSLFVAYARNGYS 289

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
            + +  F +M+++    +  T   +L+ CSSL  +   +++H + +K     +  +  + 
Sbjct: 290 MEAVWNFREMVMEKMAIDQSTITSLLQVCSSLGQLRLAEEVHCYALKTLFKLDTSLLNAT 349

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           + +Y + G +  A + FD L NKD+ ++TA++T YAQ    +  L  F++M  +G+ S  
Sbjct: 350 ITVYGRCGDIATAEIIFDLLENKDIISWTALLTCYAQNDLPQETLLFFKEMLRKGLGSPI 409

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
           F + S L  CS     A GR +HS AVK G      V  ALV MYAKCGS+  A  +F  
Sbjct: 410 FCITSVLRACSSTTNHAVGRQIHSRAVKLGIDDADSVENALVTMYAKCGSVHIALKIFNS 469

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
              R   SWN +I  + +HG    A++ F +M +EG  PD+ TFV +LS+CS MGLI EG
Sbjct: 470 MRSRGIISWNALITSFSQHGNEVAAIQLFDLMQEEGICPDDYTFVGLLSSCSRMGLIAEG 529

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
            ++F  +K +Y + P ++H+ CM+D+  RAG+F++   FI      P+ LVWE LL +C 
Sbjct: 530 CEYFKQMKALYNVEPKMEHYTCMVDLFARAGRFSDALEFIDALPCQPDQLVWEALLASCR 589

Query: 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSC 594
            HGN+EL    A+K+LE+ P+  S Y+  S+I A+   W + +  R +   Q ++K    
Sbjct: 590 THGNVELGRLAAKKILEIRPEDPSPYITLSNIHASVHMWEEKTWDRTVFDFQRVRKYAGS 649

Query: 595 SWIE 598
           SW++
Sbjct: 650 SWVD 653



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 148/549 (26%), Positives = 241/549 (43%), Gaps = 47/549 (8%)

Query: 72  VVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQG 131
            VH  A++LG     +L  +L+  Y +  L   A  +F  +   +VV+   +I+ + + G
Sbjct: 18  TVHGAAVKLGFLASTYLCNNLLLSYFRSSLPAEARGLFDEMPHRNVVSCSVLISNVSRLG 77

Query: 132 CCQEAAKIFNLM-----RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
              EA  +F+ M     R S  +PN F L +LV       D   G  +HA   K+G   D
Sbjct: 78  ALCEAFLLFSDMLLSGGRGSYDRPNSFALGALVSGCARASDIVAGSQVHASAVKFGVAGD 137

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP----DQGLRIFY 242
             V  ALV MY + G V    RVF     +  VSW ++ +   + +      D  L +  
Sbjct: 138 ESVAGALVDMYSKCGCVDSSWRVFALSPQRSVVSWTSMIACLVNNDGSSGHRDAALSLLR 197

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +MLL    P   TF  ILK   +   +  GKQ+H   +K   + +  +GT+L+ MY + G
Sbjct: 198 KMLLLKIWPTNATFSCILKVFDAPGLLPGGKQIHGCLLKMGTEVDPALGTALIAMYGRCG 257

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            +++           D F+ T++  +YA+ G +  A+  FR+M +E +  ++ T+ S L 
Sbjct: 258 GVDEIA-KLSCRIRHDAFSRTSLFVAYARNGYSMEAVWNFREMVMEKMAIDQSTITSLLQ 316

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            CS +  L     +H  A+KT   LD  +  A + +Y +CG I  AE +F     +D  S
Sbjct: 317 VCSSLGQLRLAEEVHCYALKTLFKLDTSLLNATITVYGRCGDIATAEIIFDLLENKDIIS 376

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSI 481
           W  ++  Y ++ L ++ L  F+ ML +G          VL ACS       G++ H  ++
Sbjct: 377 WTALLTCYAQNDLPQETLLFFKEMLRKGLGSPIFCITSVLRACSSTTNHAVGRQIHSRAV 436

Query: 482 K------------------KIYGITPTIKHFACM-----------IDILGRAGK---FTE 509
           K                  K   +   +K F  M           I    + G      +
Sbjct: 437 KLGIDDADSVENALVTMYAKCGSVHIALKIFNSMRSRGIISWNALITSFSQHGNEVAAIQ 496

Query: 510 IENFITETKLTPNALVWENLLGACSWHGNI-ELDE--KDAEKLLELEPKMESNYVFPSDI 566
           + + + E  + P+   +  LL +CS  G I E  E  K  + L  +EPKME +Y    D+
Sbjct: 497 LFDLMQEEGICPDDYTFVGLLSSCSRMGLIAEGCEYFKQMKALYNVEPKME-HYTCMVDL 555

Query: 567 SATQGRWND 575
            A  GR++D
Sbjct: 556 FARAGRFSD 564



 Score = 43.5 bits (101), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 35/175 (20%), Positives = 75/175 (42%), Gaps = 9/175 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + +A ++F SM    ++SWNAL+  +++ G+    + LF  M++       ++   +L  
Sbjct: 460 VHIALKIFNSMRSRGIISWNALITSFSQHGNEVAAIQLFDLMQEEGICPDDYTFVGLLSS 519

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            +  G I  G +    M               +VD++++ G   +AL+    +   PD +
Sbjct: 520 CSRMGLIAEGCEYFKQMKALYNVEPKMEHYTCMVDLFARAGRFSDALEFIDALPCQPDQL 579

Query: 119 AWGAIITCLDQQGCCQ----EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
            W A++      G  +     A KI  +  E    P+ ++  S + A+    +++
Sbjct: 580 VWEALLASCRTHGNVELGRLAAKKILEIRPE---DPSPYITLSNIHASVHMWEEK 631


>gi|356514087|ref|XP_003525738.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 701

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 188/601 (31%), Positives = 313/601 (52%), Gaps = 6/601 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKD---MEKKFSKFSLSTVLKG 60
           A ++F+  P   V  WNALL  Y   G   + + LF  M      E++   +++S  LK 
Sbjct: 55  AHKLFEETPCKTVYLWNALLRSYFLEGKWVETLSLFHQMNADAVTEERPDNYTVSIALKS 114

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    ++ G+++H   ++     D F+  +L+++YSKCG  ++A+KVF     PDVV W
Sbjct: 115 CSGLQKLELGKMIHGF-LKKKIDSDMFVGSALIELYSKCGQMNDAVKVFTEYPKPDVVLW 173

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRE-SSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            +IIT  +Q G  + A   F+ M     V P+   L S   A  +  D   G S+H  + 
Sbjct: 174 TSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVK 233

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           + GF++   + N+++++Y + G +   + +F  + ++D +SW+++ + + D  +    L 
Sbjct: 234 RRGFDTKLCLANSILNLYGKTGSIRIAANLFREMPYKDIISWSSMVACYADNGAETNALN 293

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F +M+ K  + N  T I  L+AC+S S++  GKQ+H   + +  + +  V T+L+DMY 
Sbjct: 294 LFNEMIDKRIELNRVTVISALRACASSSNLEEGKQIHKLAVNYGFELDITVSTALMDMYL 353

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K    E+A   F+ +  KD+ ++  + + YA+ G A  +L  F  M   G + +   L  
Sbjct: 354 KCFSPENAIELFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSNGTRPDAIALVK 413

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L   S +  +     LH+   K+G   + F+  +L+ +YAKC SID+A  VFKG    D
Sbjct: 414 ILAASSELGIVQQALCLHAFVTKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGLRHTD 473

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV-PDEITFVVVLSACSHMGLIEEGKKHF 478
             +W+ +I  Y  HG GE+AL+    M +   V P+++TFV +LSACSH GLIEEG K F
Sbjct: 474 VVTWSSIIAAYGFHGQGEEALKLSHQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMF 533

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
             +   Y + P I+H+  M+D+LGR G+  +  + I    +     VW  LLGAC  H N
Sbjct: 534 HVMVNEYQLMPNIEHYGIMVDLLGRMGELDKALDMINNMPMQAGPHVWGALLGACRIHQN 593

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           I++ E  A  L  L+P     Y   S+I      W+D + +R L+    +KK    S +E
Sbjct: 594 IKIGELAALNLFLLDPNHAGYYTLLSNIYCVDKNWHDAAKLRTLIKENRLKKIVGQSMVE 653

Query: 599 V 599
           +
Sbjct: 654 I 654



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 132/501 (26%), Positives = 246/501 (49%), Gaps = 17/501 (3%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           +H+  +++G ALD F+   L  +Y++     +A K+F       V  W A++     +G 
Sbjct: 23  LHSQCLKVGLALDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEGK 82

Query: 133 CQEAAKIFNLMRESSV---KPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
             E   +F+ M   +V   +P+ + ++  +++ +       G+ IH  + K   +SD  V
Sbjct: 83  WVETLSLFHQMNADAVTEERPDNYTVSIALKSCSGLQKLELGKMIHGFL-KKKIDSDMFV 141

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM-LLKG 248
           G+AL+ +Y + G+++   +VF      D V W ++ + ++   SP+  L  F +M +L+ 
Sbjct: 142 GSALIELYSKCGQMNDAVKVFTEYPKPDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQ 201

Query: 249 FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
             P+  T +    AC+ LSD   G+ +H    +   D    +  S++++Y K+G +  A 
Sbjct: 202 VSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRIAA 261

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
             F  +  KD+ ++++++  YA  G    AL  F +M  + I+ N  T+ S L  C+  +
Sbjct: 262 NLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASSS 321

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
            L  G+ +H +AV  G  LD+ VSTAL+ MY KC S ++A  +F     +D  SW ++  
Sbjct: 322 NLEEGKQIHKLAVNYGFELDITVSTALMDMYLKCFSPENAIELFNRMPKKDVVSWAVLFS 381

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGIT 488
           GY + G+  K+L  F  ML  G  PD I  V +L+A S +G++++     + + K  G  
Sbjct: 382 GYAEIGMAHKSLGVFCNMLSNGTRPDAIALVKILAASSELGIVQQALCLHAFVTK-SGFD 440

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEK 548
                 A +I++  +              + T + + W +++ A  +HG         E+
Sbjct: 441 NNEFIGASLIELYAKCSSIDNANKVFKGLRHT-DVVTWSSIIAAYGFHGQ-------GEE 492

Query: 549 LLELEPKMESNY--VFPSDIS 567
            L+L  +M SN+  V P+D++
Sbjct: 493 ALKLSHQM-SNHSDVKPNDVT 512



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 110/411 (26%), Positives = 192/411 (46%), Gaps = 3/411 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLK 59
           M  A +VF   P+ +VV W +++ GY ++G  +  +  F  M  +E+      +L +   
Sbjct: 155 MNDAVKVFTEYPKPDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAAS 214

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             A       G+ VH    R G      L+ S++++Y K G    A  +F  +   D+++
Sbjct: 215 ACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRIAANLFREMPYKDIIS 274

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W +++ C    G    A  +FN M +  ++ N+  + S +RA   + +   G+ IH +  
Sbjct: 275 WSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKQIHKLAV 334

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
            YGFE D  V  AL+ MY++         +F  +  +D VSW  LFS + +     + L 
Sbjct: 335 NYGFELDITVSTALMDMYLKCFSPENAIELFNRMPKKDVVSWAVLFSGYAEIGMAHKSLG 394

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F  ML  G +P+    + IL A S L  V     LHA   K   D N  +G SL+++Y 
Sbjct: 395 VFCNMLSNGTRPDAIALVKILAASSELGIVQQALCLHAFVTKSGFDNNEFIGASLIELYA 454

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFTLA 358
           K   +++A   F  L + D+  +++II +Y   G+ E ALK   +M     +K N+ T  
Sbjct: 455 KCSSIDNANKVFKGLRHTDVVTWSSIIAAYGFHGQGEEALKLSHQMSNHSDVKPNDVTFV 514

Query: 359 SCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
           S L+ CS    +  G ++ H +  +   + ++     +V +  + G +D A
Sbjct: 515 SILSACSHAGLIEEGIKMFHVMVNEYQLMPNIEHYGIMVDLLGRMGELDKA 565


>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 708

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 196/598 (32%), Positives = 311/598 (52%), Gaps = 6/598 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF  +PE +   W  +L  Y  + +  +V+  +  +      +     S  LK    
Sbjct: 107 ARLVFDQIPEPDFYLWKVILRCYCLNNESFEVIKFYDLLMKHGFGYDDIVFSKALKACTE 166

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G+ +H   +++  + D  +   L+DMY+KCG   ++ KVF  I   +VV W ++
Sbjct: 167 VQDLDNGKKIHCQIVKVP-SFDNVVLTGLLDMYAKCGEIKSSYKVFEDITLRNVVCWTSM 225

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    +    +E   +FN MRE+SV  N++   +LV A T+      G+  H  + K G 
Sbjct: 226 IAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQGKWFHGCLIKSGI 285

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E  + +  +L+ MY++ G +S   RVF   +H D V W A+   +    S ++ L +F +
Sbjct: 286 ELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQK 345

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL-DGNHVVGTSLVDMYDKSG 302
           M   G KPN  T   +L  C  + ++  G+ +H  +IK  + D N  V  +LV MY K  
Sbjct: 346 MSGVGIKPNCVTIASVLSGCGLVGNLELGRSIHGLSIKVGIWDTN--VANALVHMYAKCY 403

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
              DA   F+  + KD+ A+ +II+ ++Q G    AL  F +M  E +  N  T+AS  +
Sbjct: 404 QNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNTESVMPNGVTVASLFS 463

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLD--MFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
            C+ + +LA G  LH+ +VK G L    + V TAL+  YAKCG  + A  +F     ++T
Sbjct: 464 ACASLGSLAIGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDAESARLIFDTIEEKNT 523

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            +W+ MIGGY K G  + +LE F  ML +   P+E TF  VLSACSH G++ EGKK+FSS
Sbjct: 524 ITWSAMIGGYGKQGDTKGSLELFEEMLKKQQKPNESTFTSVLSACSHTGMVNEGKKYFSS 583

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + K Y  TP+ KH+ CM+D+L RAG+  +  + I +  + P+   +   L  C  H   +
Sbjct: 584 MYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHGCGMHSRFD 643

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           L E   +K+L+L P   S YV  S++ A+ GRW+    VR L+  +G+ K    S +E
Sbjct: 644 LGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWSQAKEVRNLMKQRGLSKIAGHSIME 701



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 188/397 (47%), Gaps = 17/397 (4%)

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H V+   G   D  +   LVS+Y   G       VF+ I   D   W  +   +      
Sbjct: 76  HGVLTGNGLMGDISIATKLVSLYGSFGYTKDARLVFDQIPEPDFYLWKVILRCYCLNNES 135

Query: 235 DQGLRIFYQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK-HSLDGNHVVGT 292
            + ++ FY +L+K GF  +   F   LKAC+ + D+  GK++H   +K  S D  +VV T
Sbjct: 136 FEVIK-FYDLLMKHGFGYDDIVFSKALKACTEVQDLDNGKKIHCQIVKVPSFD--NVVLT 192

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
            L+DMY K G ++ +   F+ +  +++  +T++I  Y +    E  L  F +MR   +  
Sbjct: 193 GLLDMYAKCGEIKSSYKVFEDITLRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRENSVLG 252

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
           NE+T  + +  C+ +  L  G+  H   +K+G  L   + T+L+ MY KCG I +A  VF
Sbjct: 253 NEYTYGTLVMACTKLRALHQGKWFHGCLIKSGIELSSCLVTSLLDMYVKCGDISNARRVF 312

Query: 413 KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE 472
              +  D   W  MI GY  +G   +AL  F+ M   G  P+ +T   VLS C  +G +E
Sbjct: 313 NEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMSGVGIKPNCVTIASVLSGCGLVGNLE 372

Query: 473 EGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLG 531
            G+  H  SIK   GI  T    A ++ +  +  +  + + ++ E +   + + W +++ 
Sbjct: 373 LGRSIHGLSIK--VGIWDTNVANA-LVHMYAKCYQNRDAK-YVFEMESEKDIVAWNSIIS 428

Query: 532 ACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISA 568
             S +G+I        + L L  +M +  V P+ ++ 
Sbjct: 429 GFSQNGSI-------HEALFLFHRMNTESVMPNGVTV 458



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 106/218 (48%), Gaps = 4/218 (1%)

Query: 258 VILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK 317
           ++L  C+++  +   +Q H     + L G+  + T LV +Y   G  +DA + FD +   
Sbjct: 61  LLLSKCTNIDSL---RQAHGVLTGNGLMGDISIATKLVSLYGSFGYTKDARLVFDQIPEP 117

Query: 318 DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLH 377
           D + +  I+  Y    E+   +K +  +   G   ++   +  L  C+ V  L NG+ +H
Sbjct: 118 DFYLWKVILRCYCLNNESFEVIKFYDLLMKHGFGYDDIVFSKALKACTEVQDLDNGKKIH 177

Query: 378 SIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGE 437
              VK     D  V T L+ MYAKCG I  +  VF+   LR+   W  MI GYVK+ L E
Sbjct: 178 CQIVKVPS-FDNVVLTGLLDMYAKCGEIKSSYKVFEDITLRNVVCWTSMIAGYVKNDLYE 236

Query: 438 KALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           + L  F  M +   + +E T+  ++ AC+ +  + +GK
Sbjct: 237 EGLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQGK 274



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 68/126 (53%), Gaps = 4/126 (3%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E A+ +F ++ E N ++W+A++ GY + GD +  + LF  M   ++K ++ + ++VL   
Sbjct: 509 ESARLIFDTIEEKNTITWSAMIGGYGKQGDTKGSLELFEEMLKKQQKPNESTFTSVLSAC 568

Query: 62  ANSGYIKAGQVVHAMAIR--LGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
           +++G +  G+   +   +        K  +C +VDM ++ G  + AL +  ++   PDV 
Sbjct: 569 SHTGMVNEGKKYFSSMYKDYNFTPSTKHYTC-MVDMLARAGELEQALDIIEKMPIQPDVR 627

Query: 119 AWGAII 124
            +GA +
Sbjct: 628 CFGAFL 633


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 185/602 (30%), Positives = 322/602 (53%), Gaps = 2/602 (0%)

Query: 1   MELAKRVFKSMPEL-NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           +E A+RVF  MP++ +V  W AL++GYA++GD ++ + LF  M     +   +++S VLK
Sbjct: 145 LENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLK 204

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             A  G I+ G+VVH +  +LG      +  +L+  Y+K     +A+ VF  +   DV++
Sbjct: 205 CIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVIS 264

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W ++I+     G   +A ++F  M     + +   L S++ A  E      G  +H    
Sbjct: 265 WNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSV 324

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K GF S T + N L+ MY         +++F  +  ++ VSW A+ + +      D+   
Sbjct: 325 KTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAG 384

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F +M L+G +P++      L A +    +  GK +H + I++ ++    V  +L++MY 
Sbjct: 385 LFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYV 444

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G +E+A + FD + +KD+ ++  +I  Y++   A  A   F +M L+ ++ N  T+  
Sbjct: 445 KCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQ-LRPNAVTMTC 503

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L   + +++L  GR +H+ A++ G+L D FV+ AL+ MY KCG++  A  +F   + ++
Sbjct: 504 ILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLSNKN 563

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SW +M+ GY  HG G  A+  F  M   G  PD  +F  +L ACSH GL +EG + F 
Sbjct: 564 LISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSGLRDEGWRFFD 623

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           +++K + I P +KH+ CM+D+L   G   E   FI    + P++ +W +LL  C  H N+
Sbjct: 624 AMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIWVSLLRGCRIHRNV 683

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +L E+ AE++ ELEP+    YV  ++I A   RW     ++  +  +G+++   CSWIE 
Sbjct: 684 KLAEEVAERVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKIGGRGLRENTGCSWIEA 743

Query: 600 DG 601
            G
Sbjct: 744 KG 745



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 118/404 (29%), Positives = 215/404 (53%), Gaps = 3/404 (0%)

Query: 84  LDKFLSCSLVDMYSKCGLADNALKVFYRIKD-PDVVAWGAIITCLDQQGCCQEAAKIFNL 142
           +D  L   LV MY KCG  +NA +VF  +    DV  W A+++   + G  +E   +F  
Sbjct: 127 MDNVLGQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRK 186

Query: 143 MRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGR 202
           M    V+P+ + ++ +++     G    GE +H ++ K GF S   VGNAL++ Y ++ R
Sbjct: 187 MHCCGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNR 246

Query: 203 VSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKA 262
                 VF+ + H+D +SWN++ S        D+ + +F +M L+G + +  T + +L A
Sbjct: 247 TKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPA 306

Query: 263 CSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAY 322
           C+ L  +  G+ +H +++K        +   L+DMY            F ++  K++ ++
Sbjct: 307 CAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSW 366

Query: 323 TAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVK 382
           TA+ITSY +AG  +     F++M LEG + + F + S L+  +    L +G+ +H  A++
Sbjct: 367 TAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIR 426

Query: 383 TGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEA 442
            G    + V+ AL+ MY KCG++++A+ +F G   +D  SWN +IGGY ++ L  +A   
Sbjct: 427 NGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSL 486

Query: 443 FRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIY 485
           F  ML +   P+ +T   +L A + +  +E G++ H  ++++ Y
Sbjct: 487 FTEMLLQ-LRPNAVTMTCILPAAASLSSLERGREMHAYALRRGY 529


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 195/636 (30%), Positives = 322/636 (50%), Gaps = 41/636 (6%)

Query: 4   AKRVFKSMPELN-VVSWNALLNGYAESGDGQKVMHLFCS--------------------- 41
           A+ +F  MP  N   S N +L+GY+ SG      HLF S                     
Sbjct: 53  ARALFDQMPHRNNAFSLNRMLSGYSRSGQLSAAHHLFLSSPPHLRDAVTWTVMIGAFASA 112

Query: 42  -----------MKDMEKK---FSKFSLSTVLKGFANSGYIKAGQVV---HAMAIRLGCAL 84
                       +DM ++     + +++TVL     SG   A  ++   H  A++LG   
Sbjct: 113 PGARASDAVSLFRDMLREGVAPDRVTVATVLNLPPASGGTAAAIIIASLHPFALKLGLLH 172

Query: 85  DKFLSC-SLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLM 143
              + C +L+D Y K GL   A +VF  +   D V + A++    ++G   EA  +F  M
Sbjct: 173 SNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAM 232

Query: 144 RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRV 203
           R   +   +F  ++++   T  GD   G  +H ++ +    S+  V N+L+  Y +   +
Sbjct: 233 RRKGLAATRFTFSTVLTVATGVGDLCLGRQVHGLVAR-ATSSNVFVNNSLLDFYSKCDCL 291

Query: 204 SYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKAC 263
               ++F  +  +D+VS+N + + +         LR+F +M    F      +  +L   
Sbjct: 292 DEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPYASLLSVA 351

Query: 264 SSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYT 323
            S+  +G GKQ+HA  +   L    +VG +L+DMY K G L+ A   F +  +K   ++T
Sbjct: 352 GSVPHIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWT 411

Query: 324 AIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKT 383
           A+IT   Q G+ E AL+ F  MR  G+  +  T +S +   S +A +  GR LHS  +++
Sbjct: 412 AMITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLIRS 471

Query: 384 GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF 443
           GH+  +F  +AL+ MY KCG +D+A   F     R++ SWN +I  Y  +G  + A++ F
Sbjct: 472 GHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYGQAKNAIKMF 531

Query: 444 RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGR 503
             ML  G+ PD +TF+ VLSACSH GL EE  K+F  ++  YGI+P  +H++C+ID LGR
Sbjct: 532 EGMLCYGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWKEHYSCVIDTLGR 591

Query: 504 AGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFP 563
            G+F +++  + E     + ++W ++L +C  HGN +L    AEKL  +     + YV  
Sbjct: 592 VGRFDKVQEMLGEMPFEDDPIIWSSILHSCRTHGNQDLARVAAEKLFSMGSTDATPYVIL 651

Query: 564 SDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           S+I A  G+W D +GV+ ++  +G++KE   SW+EV
Sbjct: 652 SNIFAKAGKWEDAAGVKKIMRDRGLRKETGYSWVEV 687


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 186/563 (33%), Positives = 295/563 (52%), Gaps = 38/563 (6%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           +HA  +  G  L   L   L+D++S     D A  V  +   P   +W ++I      G 
Sbjct: 18  IHAQTLIHGLPLQTHLIPKLIDLHS----IDYARFVLDQTPSPTDFSWNSLIRAYTVHGS 73

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
            Q +  ++  M  SS KP+ F    +++A +  G    GE IH  + + GF SD  V N+
Sbjct: 74  PQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHTHVLRLGFGSDLFVCNS 133

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG--------------- 237
           L+ MY +  R+      ++ +  +D VSWN++ S +  +   ++                
Sbjct: 134 LIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEKARDLFEEMPMRRNVVC 193

Query: 238 -----------------LRIFYQMLLKG--FKPNMCTFIVILKACSSLSDVGFGKQLHAH 278
                            L +F QML+     +PN  T + +L ACS+L +   G+ L   
Sbjct: 194 WTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLCNYEVGRFLSVF 253

Query: 279 TIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMA 338
              + +  N ++ T+L+DMY K G +E A   FD ++ K+L ++ AIIT   Q G  E A
Sbjct: 254 IDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEA 313

Query: 339 LKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAM 398
           +  +R M+ + +K NE TL + L+ C+ +  L  GR +H    + G  L++ ++TALV M
Sbjct: 314 IDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYLGRNGLDLNVILATALVDM 373

Query: 399 YAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITF 458
           YAKCG IDDA  +F  ++ +D A WN MI G   HG G  +L  F  M+  G  P+++TF
Sbjct: 374 YAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTF 433

Query: 459 VVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK 518
           + VLSAC+H GL+EEG+  FSS+   +G++P ++H+ACM+D+LGRAG   E    +    
Sbjct: 434 IGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYELVQNML 493

Query: 519 LTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSG 578
           + P++++W  LL AC  H N+EL +K +E ++  +       +  S+I A+ GRW D + 
Sbjct: 494 IPPDSIIWGALLSACRIHRNLELADKISETIMASQDPNIGFCILLSNIYASSGRWKDVAR 553

Query: 579 VRALLSSQGIKKEPSCSWIEVDG 601
           VR  +  + IKK   CSW+EVDG
Sbjct: 554 VRRQVKEKRIKKPSGCSWVEVDG 576



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 116/469 (24%), Positives = 209/469 (44%), Gaps = 36/469 (7%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+ V    P     SWN+L+  Y   G  Q  + L+  M     K S F+   VLK 
Sbjct: 43  IDYARFVLDQTPSPTDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKA 102

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +  G +  G+ +H   +RLG   D F+  SL+DMY KC   D+A   +  +   D V+W
Sbjct: 103 CSTLGSVLEGEQIHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSW 162

Query: 121 GAIITCLDQQGCCQEAAKIFN----------------------------------LMRES 146
            +II+   Q G  ++A  +F                                   L+   
Sbjct: 163 NSIISGYVQWGQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSAD 222

Query: 147 SVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYG 206
            V+PN   +  L+ A +   +   G  +   I       +T++  AL+ MY + G V   
Sbjct: 223 EVQPNAATMVCLLSACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKA 282

Query: 207 SRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266
            R+F+ ++ ++  SWNA+ +        ++ + ++  M  +  KPN  T + +L AC+ L
Sbjct: 283 WRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGL 342

Query: 267 SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
             +  G+++H +  ++ LD N ++ T+LVDMY K G ++DA + F   + KD+  + A+I
Sbjct: 343 GALELGREVHLYLGRNGLDLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMI 402

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRL-LHSIAVKTGH 385
              A  G+   +L  F +M   G++ N+ T    L+ C+    +  GR+   S+A K G 
Sbjct: 403 LGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGL 462

Query: 386 LLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL-RDTASWNMMIGGYVKH 433
              +     +V +  + G + +A  + +   +  D+  W  ++     H
Sbjct: 463 SPKLEHYACMVDLLGRAGHLKEAYELVQNMLIPPDSIIWGALLSACRIH 511



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 126/473 (26%), Positives = 215/473 (45%), Gaps = 60/473 (12%)

Query: 154 VLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAI 213
           +L SL+R  T          IHA    +G    T +   L+ ++     + Y   V +  
Sbjct: 1   MLLSLLRTATSLTQI---HQIHAQTLIHGLPLQTHLIPKLIDLH----SIDYARFVLDQT 53

Query: 214 AHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGK 273
                 SWN+L   +  + SP   L ++ +ML    KP+  TF  +LKACS+L  V  G+
Sbjct: 54  PSPTDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGE 113

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
           Q+H H ++     +  V  SL+DMY K   L+ A   +D +  +D  ++ +II+ Y Q G
Sbjct: 114 QIHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWG 173

Query: 334 EAEMA--------------------------------LKCFRKMRLEG--IKSNEFTLAS 359
           + E A                                L  FR+M +    ++ N  T+  
Sbjct: 174 QVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVC 233

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHL-LDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
            L+ CS +     GR L S+ +    + L+  + TAL+ MY+KCG ++ A  +F G + +
Sbjct: 234 LLSACSTLCNYEVGRFL-SVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCK 292

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           +  SWN +I G V+ GL E+A++ +R M  +   P+EIT V VLSAC+ +G +E G++  
Sbjct: 293 NLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVH 352

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
             + +  G+   +     ++D+  + GK  +      +T     AL W  ++   ++HG 
Sbjct: 353 LYLGR-NGLDLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVAL-WNAMILGLAYHG- 409

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
                 D    L +  +M    V P+D++        F GV +  +  G+ +E
Sbjct: 410 ------DGRDSLAVFSQMVRAGVQPNDVT--------FIGVLSACNHSGLVEE 448


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 173/499 (34%), Positives = 279/499 (55%), Gaps = 2/499 (0%)

Query: 105 ALKVFYRIKDPDVVAWGAIITCL-DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATT 163
           AL +  +++ P++  + AII  L        E   ++  M    + P+ + +  +++A  
Sbjct: 77  ALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACA 136

Query: 164 ETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNA 223
           E+   R GE +H    K G  SD  V N L+ MY     +    +VF+    +D VSW  
Sbjct: 137 ESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTT 196

Query: 224 LFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS 283
           +   +       +G+ +F++M  +  + +  T +++L +C+ L D+  G++LH + I++S
Sbjct: 197 MIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNS 256

Query: 284 -LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCF 342
            ++ +  VG +LVDMY K G    A   F  +  K++ ++ ++I+  AQ G+ + +L  F
Sbjct: 257 NVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMF 316

Query: 343 RKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC 402
           RKM+  G+K ++ TL + LN C+ +  L  G+ +H+   +     D F+  ALV MYAKC
Sbjct: 317 RKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKC 376

Query: 403 GSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVL 462
           GSID A  VF+    +D  S+  MI G   HG G KAL+ F  M   G  PDE+TFV VL
Sbjct: 377 GSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVL 436

Query: 463 SACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPN 522
           +ACSH+GL+EEG+K+F  +  IY + P ++H+ CM+D+LGRAG   E E FI    + P+
Sbjct: 437 TACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPD 496

Query: 523 ALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRAL 582
           A V   LLGAC  HG +EL E   +K+ ++EP+ +  YV  S+I ++  RW D   +R  
Sbjct: 497 AFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKT 556

Query: 583 LSSQGIKKEPSCSWIEVDG 601
           +  + ++K P CS IE+DG
Sbjct: 557 MKERNLEKTPGCSSIELDG 575



 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 135/477 (28%), Positives = 225/477 (47%), Gaps = 38/477 (7%)

Query: 15  NVVSWNALLNGYAESG-DGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVV 73
           N+  +NA++ G A S  D  + + ++  M         +++  VLK  A S  ++ G+ V
Sbjct: 88  NLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEV 147

Query: 74  HAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCC 133
           H  AI++G A D ++S +L+ MY+ C +  +A KVF      D+V+W  +I    + G  
Sbjct: 148 HGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFA 207

Query: 134 QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK-YGFESDTLVGNA 192
           +E   +F  M   +++ +   L  ++ +    GD R G  +H  I +      D  VGNA
Sbjct: 208 REGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNA 267

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           LV MY++ G  ++  +VF+ +  ++ VSWN++ S         + L +F +M   G KP+
Sbjct: 268 LVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPD 327

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
             T + +L +C++L  +  GK +HA+  ++ +  +  +G +LVDMY K G ++ A   F 
Sbjct: 328 DVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQ 387

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
           ++  KD+++YTA+I   A  G+   AL  F +M   GI+ +E T    L  CS V  +  
Sbjct: 388 AMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEE 447

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
           GR          +  DM     L       G + D                  ++G   +
Sbjct: 448 GR---------KYFEDMSTIYNLRPQLEHYGCMVD------------------LLG---R 477

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITP 489
            GL  +A E  R M  E   PD      +L AC   G +E G+   S +KKI  I P
Sbjct: 478 AGLINEAEEFIRNMPIE---PDAFVLGALLGACKIHGKVELGE---SVMKKIEKIEP 528



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 181/360 (50%), Gaps = 4/360 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF + P+ ++VSW  ++ GY + G  ++ + LF  M     +    +L  VL   A 
Sbjct: 179 ARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCAR 238

Query: 64  SGYIKAGQVVHAMAIR-LGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
            G ++ G+ +H   IR     LD F+  +LVDMY KCG A+ A KVF  +   +VV+W +
Sbjct: 239 LGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNS 298

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I+ L Q+G  +E+  +F  M+   VKP+   L +++ +    G    G+ +HA + +  
Sbjct: 299 MISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQ 358

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
             +D  +GNALV MY + G +     VF+A+  +D  S+ A+      +    + L +F 
Sbjct: 359 IRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFS 418

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ-LHAHTIKHSLDGNHVVGTSLVDMYDKS 301
           +M   G +P+  TF+ +L ACS +  V  G++     +  ++L         +VD+  ++
Sbjct: 419 EMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRA 478

Query: 302 GCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFTLAS 359
           G + +A     ++    D F   A++ +    G+ E+     +K+ ++E  K   + L S
Sbjct: 479 GLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMS 538


>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
 gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
          Length = 673

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 184/541 (34%), Positives = 284/541 (52%), Gaps = 11/541 (2%)

Query: 72  VVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQG 131
           +VHA  I+ G   + F+   LV++Y+KCG+  NA KVF  +   +VV W  ++T   Q  
Sbjct: 1   MVHAHVIKTGTHEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNS 60

Query: 132 CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGN 191
             + A ++F  M ES   P+ F L+  + A +       G+  HA I KY    D+ +GN
Sbjct: 61  QPEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSIGN 120

Query: 192 ALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKP 251
           AL S+Y + G +    + F     +D +SW  + S   D      GLR+F +ML +  +P
Sbjct: 121 ALCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFENVEP 180

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF 311
           N  T   +L  CS++     G Q+H+ + K   + N  +  SLV +Y K GC+++A   F
Sbjct: 181 NDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAKNLF 240

Query: 312 DSLANKDLFAYTAIITSYAQAGE-----------AEMALKCFRKMRLEGIKSNEFTLASC 360
           + +  K+L  + A+I  +AQA +              AL  + K+   G K + FTL+S 
Sbjct: 241 NRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLFTLSSI 300

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L  CS +A L  G  +H+  +K+G L D+ V TALV MY KCGSI+ A   F   + R  
Sbjct: 301 LTVCSRLAALEQGEQIHAQTIKSGFLSDVVVGTALVDMYDKCGSIERARKAFLDMSTRTL 360

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SW  MI  + +HG  + AL+ F  M   G+ P++ITFV VL+ACSH G+++E  ++F  
Sbjct: 361 ISWTSMITSFARHGQSQHALQLFEDMRLAGFRPNQITFVGVLAACSHAGMVDEALEYFEI 420

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           ++K Y I P + H+ C++D+  R G+  E  + I    + PN  +W  L+  C  HGN E
Sbjct: 421 MQKEYKIKPVMDHYGCLVDMFVRLGRLDEAFDVIKRMDVEPNEFIWLLLIAGCRNHGNEE 480

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           L    AE+LL+L+P+    YV   ++  +  RW D S VR L+  + + K    S I + 
Sbjct: 481 LGFYAAEQLLKLKPRSTETYVVLLNMYISAERWEDVSMVRRLMKEEKVGKLKDWSRISIK 540

Query: 601 G 601
           G
Sbjct: 541 G 541



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 139/475 (29%), Positives = 239/475 (50%), Gaps = 18/475 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF ++P  NVV W  L+ GY ++   +  + +F  M +     S F+LS  L   ++
Sbjct: 34  ARKVFDNLPRRNVVVWTTLMTGYVQNSQPEVAVEVFGDMLESGSFPSNFTLSIALNACSS 93

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              I  G+  HA  I+   + D  +  +L  +YSK G  D+++K F    + DV++W  I
Sbjct: 94  LESITLGKQFHAFIIKYRISHDSSIGNALCSLYSKFGSLDSSVKAFRETGEKDVISWTTI 153

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+     G      ++F  M   +V+PN F LTS++   +       G  +H++  K G 
Sbjct: 154 ISACGDNGRAGMGLRLFIEMLFENVEPNDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGH 213

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS-----------RFQDYE 232
           ES+  + N+LV +Y++ G +     +F  + +++ ++WNA+ +            F   +
Sbjct: 214 ESNLRITNSLVYLYLKCGCIDEAKNLFNRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQ 273

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
           +  + L ++ ++   G KP++ T   IL  CS L+ +  G+Q+HA TIK     + VVGT
Sbjct: 274 TGTEALGMYLKLNRSGRKPDLFTLSSILTVCSRLAALEQGEQIHAQTIKSGFLSDVVVGT 333

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           +LVDMYDK G +E A  AF  ++ + L ++T++ITS+A+ G+++ AL+ F  MRL G + 
Sbjct: 334 ALVDMYDKCGSIERARKAFLDMSTRTLISWTSMITSFARHGQSQHALQLFEDMRLAGFRP 393

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSI---AVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           N+ T    L  CS    +        I     K   ++D +    LV M+ + G +D+A 
Sbjct: 394 NQITFVGVLAACSHAGMVDEALEYFEIMQKEYKIKPVMDHY--GCLVDMFVRLGRLDEAF 451

Query: 410 AVFKGSALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
            V K   +  +   W ++I G   HG  E    A   +L       E T+VV+L+
Sbjct: 452 DVIKRMDVEPNEFIWLLLIAGCRNHGNEELGFYAAEQLLKLKPRSTE-TYVVLLN 505


>gi|296082168|emb|CBI21173.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 181/531 (34%), Positives = 292/531 (54%), Gaps = 3/531 (0%)

Query: 72  VVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQG 131
           V H +AI+ G     + + +++  Y+KCG    A K+F      D V+W  +I      G
Sbjct: 20  VNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLG 79

Query: 132 CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGN 191
             + A +    M+      + +   S+++     G    G+ +H+++ K G+E +   G+
Sbjct: 80  NFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGS 139

Query: 192 ALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKP 251
           AL+ MY +  RV     VF++I  ++SV+WNAL S +           +   M L+G + 
Sbjct: 140 ALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEI 199

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF 311
           +  TF  +L             Q+HA  +KH L  +  V  +++  Y + G +EDA   F
Sbjct: 200 DDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVF 259

Query: 312 D-SLANKDL--FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
           D ++  +DL   ++ +I+T ++Q+G +E ALK F  MR + +  + +  ++ L  CS +A
Sbjct: 260 DGAIETRDLDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLA 319

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
           TL  G+ +H + +K+G   + FV+++L+ MY+KCG I+DA   F  +    + +WN +I 
Sbjct: 320 TLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIF 379

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGIT 488
           GY +HG G+ AL+ F +M D     D ITFV VL+ACSH+GL+EEG     S++  YGI 
Sbjct: 380 GYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIP 439

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEK 548
           P ++H+ACMID+LGRAG+  E +  I      P+A+VW+ LLGAC   G+IEL  + A  
Sbjct: 440 PRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASH 499

Query: 549 LLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           LLELEP+    YV  S +     RWN+ + ++ L+  +G+KK P  SWIEV
Sbjct: 500 LLELEPEEHCTYVLLSSMFGHLRRWNEKASIKRLMKERGVKKVPGWSWIEV 550



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 134/490 (27%), Positives = 234/490 (47%), Gaps = 12/490 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + +A ++F    + + VSWN ++ G+   G+ +  +    SMK        +S  ++LKG
Sbjct: 50  IRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKG 109

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A  GY++ GQ VH+M +++G   + F   +L+DMY+KC   ++A +VF  I   + V W
Sbjct: 110 VACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTW 169

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I+   Q G    A  + + M    V+ +      L+    +    +    +HA I K
Sbjct: 170 NALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVK 229

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ---DSVSWNALFSRFQDYESPDQG 237
           +G  SDT V NA+++ Y E G +    RVF+        D VSWN++ + F      +  
Sbjct: 230 HGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLDHVSWNSILTGFSQSGLSEDA 289

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           L+ F  M  +    +   F  +L++CS L+ +  G+Q+H   +K   + N  V +SL+ M
Sbjct: 290 LKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFM 349

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K G +EDA  +FD+       A+ ++I  YAQ G  ++AL  F  M+   +K +  T 
Sbjct: 350 YSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITF 409

Query: 358 ASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
            + L  CS +  +  G   L S+    G    M     ++ +  + G +D+A+A+ +   
Sbjct: 410 VAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMP 469

Query: 417 LR-DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE-ITFVVVLSACSHMGLIEEG 474
              D   W  ++G     G  E A +    +L+    P+E  T+V++ S   H+    E 
Sbjct: 470 FEPDAMVWKTLLGACRTCGDIELASQVASHLLE--LEPEEHCTYVLLSSMFGHLRRWNEK 527

Query: 475 KKHFSSIKKI 484
               +SIK++
Sbjct: 528 ----ASIKRL 533



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 5/165 (3%)

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
           S    L    + H +A+K+G    ++ +  +++ YAKCG I  A  +F  ++ RD  SWN
Sbjct: 10  SSFTALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWN 69

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
            MI G+V  G  E ALE  + M   G+  D  +F  +L   + +G +E G++  S + K+
Sbjct: 70  TMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKM 129

Query: 485 YGITPTIKHFACMIDILGRAGK----FTEIENFITETKLTPNALV 525
            G    +   + ++D+  +  +    F   ++      +T NAL+
Sbjct: 130 -GYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALI 173


>gi|326490736|dbj|BAJ90035.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511421|dbj|BAJ87724.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 801

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 200/609 (32%), Positives = 323/609 (53%), Gaps = 14/609 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +++ +R+F +MP+ NVVSWN L   Y ++G   + + +F  M +   + +  S   V   
Sbjct: 158 VDVVRRLFDAMPKKNVVSWNTLFGWYVKTGRPDEALEMFARMLEDGVRPTPVSFVNVFPA 217

Query: 61  FANSGYIKAGQVVHAMAIRLGCAL--DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
            A SG      +++ + I+ G     D F+  S + M+S+     +A  VF R    ++ 
Sbjct: 218 -AGSGDPSWPFLLYGLLIKHGVEYVNDLFVVSSAIGMFSEISDVQSARMVFDRAGKKNIE 276

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFV-LTSLVRATTETGDQRCGESIHAV 177
            W  +IT   Q G   +A  +F  +  S   P+  V   S V A +++ D R G+ +H  
Sbjct: 277 VWNTMITGYVQNGQFSQAMDLFIQILGSKEVPSDVVTFLSAVTAASQSQDVRLGQQLHGY 336

Query: 178 ICKYGFES--DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD 235
           + K G  S    ++GNALV MY   G V     +F+ +  +D VSWN + + F   +   
Sbjct: 337 LMK-GMHSTLPVILGNALVVMYSRCGNVQTAFELFDRLPEKDIVSWNTMITAFVQNDFDL 395

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
           +GL + YQM   GF P+  T   +L A S+  D+  GKQ H + I+H ++G  +  + L+
Sbjct: 396 EGLLLVYQMQKSGFIPDTVTLTAVLSAASNTGDLQIGKQSHGYLIRHGIEGEGL-ESYLI 454

Query: 296 DMYDKSGCLEDAGVAFDSLAN-KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           DMY KSG ++ A   FD   N +D   + A+I  Y Q+G+ E A+  FR M   G++   
Sbjct: 455 DMYSKSGRIDMAQRVFDGYGNDRDEVTWNAMIAGYTQSGQPEQAVLQFRAMIEAGVEPTS 514

Query: 355 FTLASCLNGCSPVAT-LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
            TLAS L  C PV   +  G+ +HS A++     ++FV TALV MY+KCG I  AE VF 
Sbjct: 515 VTLASVLPACDPVGGGVCAGKQIHSFALRHSLDTNVFVGTALVDMYSKCGEISAAENVFG 574

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
           G   + T ++  MI G  +HG GE+AL  F  M D+G  PD +TF+  +SAC++ GL++E
Sbjct: 575 GMTEKSTVTYTTMISGLGQHGFGERALSLFYSMRDKGLKPDAVTFLAAISACNYSGLVDE 634

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNAL-VWENLLGA 532
           G   + S+ + +G+  T +H  C++D+L +AG+  E  +F+       N + +W +LL +
Sbjct: 635 GLSLYRSM-ETFGLAATPQHHCCIVDLLAKAGRVDEAYDFVESLGEDGNFIAIWGSLLAS 693

Query: 533 CSWHGNIELDEKDAEKLLELEPKM-ESNY-VFPSDISATQGRWNDFSGVRALLSSQGIKK 590
           C   G +EL     EK+L +E +   + Y V  S + A +G W+    +R  +  +G++K
Sbjct: 694 CKAQGKMELAAWATEKVLNIEKQYGHAGYNVLLSQLFAAEGNWSSADSLRKEMRLRGLRK 753

Query: 591 EPSCSWIEV 599
           E   +WI+V
Sbjct: 754 EAGSTWIKV 762



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 132/512 (25%), Positives = 230/512 (44%), Gaps = 25/512 (4%)

Query: 20  NALLNGYAESGDGQKVMHLFCSMKDMEKKFSK---FSLSTVLKGFANSGYIKAGQVVHAM 76
           N LL  Y         + L+  +    +   +   ++ S  L   A S  ++ G+ VHA 
Sbjct: 66  NVLLIAYVAGALPDHALRLYALLNHAARPAPRSDHYTYSCALTACARSRRLRLGRSVHAH 125

Query: 77  AIRLGCALDK--FLSCSLVDMYSKC-----GLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
            +R   +L     L  SL+++Y+ C     G  D   ++F  +   +VV+W  +     +
Sbjct: 126 LLRRARSLPDTAVLRNSLLNLYASCARHRRGGVDVVRRLFDAMPKKNVVSWNTLFGWYVK 185

Query: 130 QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE--SDT 187
            G   EA ++F  M E  V+P      ++  A   +GD      ++ ++ K+G E  +D 
Sbjct: 186 TGRPDEALEMFARMLEDGVRPTPVSFVNVFPAAG-SGDPSWPFLLYGLLIKHGVEYVNDL 244

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML-L 246
            V ++ + M+ E   V     VF+    ++   WN + + +       Q + +F Q+L  
Sbjct: 245 FVVSSAIGMFSEISDVQSARMVFDRAGKKNIEVWNTMITGYVQNGQFSQAMDLFIQILGS 304

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH-----VVGTSLVDMYDKS 301
           K    ++ TF+  + A S   DV  G+QLH + +K    G H     ++G +LV MY + 
Sbjct: 305 KEVPSDVVTFLSAVTAASQSQDVRLGQQLHGYLMK----GMHSTLPVILGNALVVMYSRC 360

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G ++ A   FD L  KD+ ++  +IT++ Q       L    +M+  G   +  TL + L
Sbjct: 361 GNVQTAFELFDRLPEKDIVSWNTMITAFVQNDFDLEGLLLVYQMQKSGFIPDTVTLTAVL 420

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL-RDT 420
           +  S    L  G+  H   ++ G +    + + L+ MY+K G ID A+ VF G    RD 
Sbjct: 421 SAASNTGDLQIGKQSHGYLIRHG-IEGEGLESYLIDMYSKSGRIDMAQRVFDGYGNDRDE 479

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            +WN MI GY + G  E+A+  FR M++ G  P  +T   VL AC  +G      K   S
Sbjct: 480 VTWNAMIAGYTQSGQPEQAVLQFRAMIEAGVEPTSVTLASVLPACDPVGGGVCAGKQIHS 539

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIEN 512
               + +   +     ++D+  + G+ +  EN
Sbjct: 540 FALRHSLDTNVFVGTALVDMYSKCGEISAAEN 571


>gi|302807080|ref|XP_002985271.1| hypothetical protein SELMODRAFT_121697 [Selaginella moellendorffii]
 gi|300147099|gb|EFJ13765.1| hypothetical protein SELMODRAFT_121697 [Selaginella moellendorffii]
          Length = 744

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 188/609 (30%), Positives = 316/609 (51%), Gaps = 15/609 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R F +M   NVVSW+A++  YA+ G     + LF  M     K +  +  +VL   A+
Sbjct: 11  ARRAFDAMVVRNVVSWSAMIAAYAQRGHPADALELFVRMDHEGVKANAITFVSVLDACAS 70

Query: 64  SGYIKAGQVVHAMAIRLGC-ALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
            G I  G+ +H   +  G    D  L  ++V+MY KCG  D A +VF R++  + V W  
Sbjct: 71  LGAIALGKSIHERIVADGLLGDDVILGNTIVNMYGKCGEVDLAREVFERMEAKNTVTWNT 130

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I    +    +EA  +   M    ++PN+  L S++ A         G  +H ++   G
Sbjct: 131 MIAACSRHDRYKEAFALLGEMDLDGLRPNKITLVSVIDACAWMQSISRGRIVHEIVAGEG 190

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            ESD  V NALV++Y + G++       E I  +D +SW  L + +  +    + + +  
Sbjct: 191 LESDNAVANALVNLYGKCGKLRAARHALEGIETRDKISWTTLLAAYARHGHGKRAIAVIK 250

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M  +G K +  TF+ +L++C +++ +  G+++H    +  ++ + V+ T+LVDMY K G
Sbjct: 251 RMDHEGVKLDSFTFVNLLESCVAIAALALGEEIHDRLAESGIELDPVLQTALVDMYGKCG 310

Query: 303 CLEDAGVAFDSLAN-KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
             + A  AFD + + +D+  + A++ +Y    + +  L  F +M L+G+  +  T  S L
Sbjct: 311 NPDAARRAFDRMRDVRDVTVWNALLAAYVLRDQGKETLGIFARMSLQGVAPDAVTFLSIL 370

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDM-------FVSTALVAMYAKCGSIDDAEAVF-- 412
           + C+ +A L  GRL HS  ++ G L D         ++T+++ MYAKCGS+ DA+A F  
Sbjct: 371 DACASLAALGLGRLTHSRMLERG-LFDRQAVASADLLTTSVINMYAKCGSLADAKAEFAK 429

Query: 413 -KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
            + +   D  +W+ M+  Y + GL E+AL  F  M  EG  PD ++FV  ++ CSH GL+
Sbjct: 430 ARRARASDVVAWSAMVAAYSQFGLSEEALRCFYSMQQEGVKPDSVSFVSAIAGCSHSGLV 489

Query: 472 EEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLG 531
            E    F+S++  +GI PT  HFAC++D+L RAG   E E  +    L  +   W  LL 
Sbjct: 490 REAVAFFTSLRHDHGIAPTEAHFACLVDLLSRAGWIREAEALMRRAPLGAHHSTWMTLLS 549

Query: 532 ACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
           AC  +G++E   + A +L  L  +  S Y   + +     +W+D    R  L  +G   +
Sbjct: 550 ACRTYGDLERARRVAARLASL--RSGSAYSLLASVFCLSRKWDDVRNARQSLVERGFITQ 607

Query: 592 PSCSWIEVD 600
           P CSWIE++
Sbjct: 608 PGCSWIEIN 616



 Score =  211 bits (538), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 115/383 (30%), Positives = 198/383 (51%), Gaps = 2/383 (0%)

Query: 95  MYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFV 154
           MY++CG   +A + F  +   +VV+W A+I    Q+G   +A ++F  M    VK N   
Sbjct: 1   MYNRCGSVIHARRAFDAMVVRNVVSWSAMIAAYAQRGHPADALELFVRMDHEGVKANAIT 60

Query: 155 LTSLVRATTETGDQRCGESIHAVICKYGF-ESDTLVGNALVSMYMENGRVSYGSRVFEAI 213
             S++ A    G    G+SIH  I   G    D ++GN +V+MY + G V     VFE +
Sbjct: 61  FVSVLDACASLGAIALGKSIHERIVADGLLGDDVILGNTIVNMYGKCGEVDLAREVFERM 120

Query: 214 AHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGK 273
             +++V+WN + +    ++   +   +  +M L G +PN  T + ++ AC+ +  +  G+
Sbjct: 121 EAKNTVTWNTMIAACSRHDRYKEAFALLGEMDLDGLRPNKITLVSVIDACAWMQSISRGR 180

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
            +H       L+ ++ V  +LV++Y K G L  A  A + +  +D  ++T ++ +YA+ G
Sbjct: 181 IVHEIVAGEGLESDNAVANALVNLYGKCGKLRAARHALEGIETRDKISWTTLLAAYARHG 240

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST 393
             + A+   ++M  EG+K + FT  + L  C  +A LA G  +H    ++G  LD  + T
Sbjct: 241 HGKRAIAVIKRMDHEGVKLDSFTFVNLLESCVAIAALALGEEIHDRLAESGIELDPVLQT 300

Query: 394 ALVAMYAKCGSIDDAEAVF-KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV 452
           ALV MY KCG+ D A   F +   +RD   WN ++  YV    G++ L  F  M  +G  
Sbjct: 301 ALVDMYGKCGNPDAARRAFDRMRDVRDVTVWNALLAAYVLRDQGKETLGIFARMSLQGVA 360

Query: 453 PDEITFVVVLSACSHMGLIEEGK 475
           PD +TF+ +L AC+ +  +  G+
Sbjct: 361 PDAVTFLSILDACASLAALGLGR 383



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 122/434 (28%), Positives = 205/434 (47%), Gaps = 23/434 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++LA+ VF+ M   N V+WN ++   +     ++   L   M     + +K +L +V+  
Sbjct: 110 VDLAREVFERMEAKNTVTWNTMIAACSRHDRYKEAFALLGEMDLDGLRPNKITLVSVIDA 169

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    I  G++VH +    G   D  ++ +LV++Y KCG    A      I+  D ++W
Sbjct: 170 CAWMQSISRGRIVHEIVAGEGLESDNAVANALVNLYGKCGKLRAARHALEGIETRDKISW 229

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             ++    + G  + A  +   M    VK + F   +L+ +         GE IH  + +
Sbjct: 230 TTLLAAYARHGHGKRAIAVIKRMDHEGVKLDSFTFVNLLESCVAIAALALGEEIHDRLAE 289

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH-QDSVSWNALFSRFQDYESPDQGLR 239
            G E D ++  ALV MY + G      R F+ +   +D   WNAL + +   +   + L 
Sbjct: 290 SGIELDPVLQTALVDMYGKCGNPDAARRAFDRMRDVRDVTVWNALLAAYVLRDQGKETLG 349

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG------TS 293
           IF +M L+G  P+  TF+ IL AC+SL+ +G G+  H+  ++  L     V       TS
Sbjct: 350 IFARMSLQGVAPDAVTFLSILDACASLAALGLGRLTHSRMLERGLFDRQAVASADLLTTS 409

Query: 294 LVDMYDKSGCLEDAGVAFDSLAN---KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
           +++MY K G L DA   F         D+ A++A++ +Y+Q G +E AL+CF  M+ EG+
Sbjct: 410 VINMYAKCGSLADAKAEFAKARRARASDVVAWSAMVAAYSQFGLSEEALRCFYSMQQEGV 469

Query: 351 KSNEFTLASCLNGCS-------PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403
           K +  +  S + GCS        VA   + R  H IA    H         LV + ++ G
Sbjct: 470 KPDSVSFVSAIAGCSHSGLVREAVAFFTSLRHDHGIAPTEAHF------ACLVDLLSRAG 523

Query: 404 SIDDAEAVFKGSAL 417
            I +AEA+ + + L
Sbjct: 524 WIREAEALMRRAPL 537


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 171/462 (37%), Positives = 262/462 (56%), Gaps = 2/462 (0%)

Query: 140 FNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV-GNALVSMYM 198
            +L++  S+ P+  + + L++  T  G    G  +HA +    F  + LV  N +V+MY 
Sbjct: 75  LDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYA 134

Query: 199 ENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIV 258
           + G +    R+F+ +  +D V+W AL + F     P   L +F QML  G +PN  T   
Sbjct: 135 KCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSS 194

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKD 318
           +LKA  S   +  G QLHA  +K+    +  VG++LVDMY + G ++ A +AFD +  K 
Sbjct: 195 LLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKS 254

Query: 319 LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHS 378
             ++ A+I+ +A+ GE E AL    KM+ +  +   FT +S  + C+ +  L  G+ +H+
Sbjct: 255 EVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHA 314

Query: 379 IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEK 438
             +K+G  L  F+   L+ MYAK GSIDDA+ VF      D  SWN M+ G  +HGLG++
Sbjct: 315 HMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKE 374

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMI 498
            L+ F  ML  G  P+EI+F+ VL+ACSH GL++EG  +F  +KK Y + P + H+   +
Sbjct: 375 TLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKK-YKVEPDVPHYVTFV 433

Query: 499 DILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMES 558
           D+LGR G     E FI E  + P A VW  LLGAC  H N+EL    AE+  EL+P    
Sbjct: 434 DLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSG 493

Query: 559 NYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
             +  S+I A+ GRW D + VR ++   G+KK+P+CSW+E++
Sbjct: 494 PRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIE 535



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 117/382 (30%), Positives = 185/382 (48%), Gaps = 4/382 (1%)

Query: 55  STVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCS--LVDMYSKCGLADNALKVFYRI 112
           S +LK     G ++ G++VHA  +     LD  L     +V+MY+KCG  D+A ++F  +
Sbjct: 91  SKLLKECTRLGKVEQGRIVHAHLVD-SHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEM 149

Query: 113 KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172
              D+V W A+I    Q    ++A  +F  M    ++PN F L+SL++A+        G 
Sbjct: 150 PTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGT 209

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
            +HA   KYG++S   VG+ALV MY   G +      F+ +  +  VSWNAL S      
Sbjct: 210 QLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKG 269

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
             +  L + ++M  K F+P   T+  +  AC+S+  +  GK +HAH IK  L     +G 
Sbjct: 270 EGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGN 329

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           +L+DMY K+G ++DA   FD L   D+ ++  ++T  AQ G  +  L  F +M   GI+ 
Sbjct: 330 TLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEP 389

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
           NE +    L  CS    L  G     +  K     D+      V +  + G +D AE   
Sbjct: 390 NEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFI 449

Query: 413 KGSALRDTAS-WNMMIGGYVKH 433
           +   +  TA+ W  ++G    H
Sbjct: 450 REMPIEPTAAVWGALLGACRMH 471



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 151/306 (49%), Gaps = 4/306 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R+F  MP  ++V+W AL+ G++++   +  + LF  M  +  + + F+LS++LK   +
Sbjct: 142 ARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGS 201

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G  +HA  ++ G     ++  +LVDMY++CG  D A   F  +     V+W A+
Sbjct: 202 EHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNAL 261

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   ++G  + A  +   M+  + +P  F  +S+  A    G    G+ +HA + K G 
Sbjct: 262 ISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGL 321

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           +    +GN L+ MY + G +    RVF+ +   D VSWN + +    +    + L  F Q
Sbjct: 322 KLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQ 381

Query: 244 MLLKGFKPNMCTFIVILKAC--SSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
           ML  G +PN  +F+ +L AC  S L D G          K   D  H V  + VD+  + 
Sbjct: 382 MLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYV--TFVDLLGRV 439

Query: 302 GCLEDA 307
           G L+ A
Sbjct: 440 GLLDRA 445



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 113/226 (50%), Gaps = 1/226 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A+  F  MP  + VSWNAL++G+A  G+G+  +HL   M+    + + F+ S+V   
Sbjct: 240 MDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSA 299

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+ G ++ G+ VHA  I+ G  L  F+  +L+DMY+K G  D+A +VF R+  PDVV+W
Sbjct: 300 CASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSW 359

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             ++T   Q G  +E    F  M    ++PN+     ++ A + +G    G     ++ K
Sbjct: 360 NTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKK 419

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS-WNALF 225
           Y  E D       V +    G +    R    +  + + + W AL 
Sbjct: 420 YKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALL 465


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 189/624 (30%), Positives = 324/624 (51%), Gaps = 51/624 (8%)

Query: 20  NALLNGYAE-----SGDGQKV-------MHLFCSMKDMEKKFSKFSLSTVLKGFANSGYI 67
           +AL N YA      +GDG +        +H    +K   +    F L+ +L  +A SG +
Sbjct: 6   HALCNRYAAILSSAAGDGGRTGVRVAGAVHCLI-LKTFLQAPPTFLLNHLLTAYAKSGRL 64

Query: 68  -KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
            +A +V   M        + F   +L+   +   L  +  ++F  + + D V++ A+IT 
Sbjct: 65  ARARRVFDEMP-----DPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITG 119

Query: 127 LDQQGCCQEAAKIFN-LMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
               G    + +++  L+RE SV+P +  L++++   +   D+  G S+H  + + GF +
Sbjct: 120 FSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGA 179

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAI-------------------------------A 214
              VG+ LV MY + G +    RVF+ +                                
Sbjct: 180 YAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMV 239

Query: 215 HQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ 274
            +DS++W  + +         + L +F +M  +G   +  TF  IL AC +L+    GKQ
Sbjct: 240 DRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQ 299

Query: 275 LHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGE 334
           +HA+  +   + N  VG++LVDMY K   +  A   F  +  +++ ++TA+I  Y Q   
Sbjct: 300 IHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNAC 359

Query: 335 AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA 394
           +E A++ F +M+++GIK ++FTL S ++ C+ +A+L  G   H +A+ +G +  + VS A
Sbjct: 360 SEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNA 419

Query: 395 LVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD 454
           LV +Y KCGSI+DA  +F   +  D  SW  ++ GY + G  ++ ++ F  ML  G  PD
Sbjct: 420 LVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPD 479

Query: 455 EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFI 514
            +TF+ VLSACS  GL+E+G  +F S++K + I P   H+ CMID+  R+G+F E E FI
Sbjct: 480 GVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFI 539

Query: 515 TETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWN 574
            +   +P+A  W  LL +C   GN+E+ +  AE LLE +P+  ++YV    + A +G+W 
Sbjct: 540 KQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWT 599

Query: 575 DFSGVRALLSSQGIKKEPSCSWIE 598
           + + +R  +  + +KKEP CSWI+
Sbjct: 600 EVAHLRRGMRDRQVKKEPGCSWIK 623



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 120/448 (26%), Positives = 208/448 (46%), Gaps = 45/448 (10%)

Query: 5   KRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCS-MKDMEKKFSKFSLSTVLKGFAN 63
           +R+F SMPE + VS+NAL+ G++ +G   + + L+ + +++   + ++ +LS ++   + 
Sbjct: 99  ERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASA 158

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK---------- 113
                 G  VH   +RLG     F+   LVDMY+K GL  +A +VF  ++          
Sbjct: 159 LSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTL 218

Query: 114 ---------------------DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQ 152
                                D D + W  ++T L Q G   EA  +F  MR   V  +Q
Sbjct: 219 ITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQ 278

Query: 153 FVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEA 212
           +   S++ A         G+ IHA I +  +E +  VG+ALV MY +   +     VF  
Sbjct: 279 YTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRR 338

Query: 213 IAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFG 272
           +  ++ +SW A+   +      ++ +R F +M + G KP+  T   ++ +C++L+ +  G
Sbjct: 339 MTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEG 398

Query: 273 KQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQA 332
            Q H   +   L     V  +LV +Y K G +EDA   FD ++  D  ++TA++T YAQ 
Sbjct: 399 AQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQF 458

Query: 333 GEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG-------RLLHSIAVKTGH 385
           G+A+  +  F KM + G+K +  T    L+ CS    +  G       +  H I     H
Sbjct: 459 GKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDH 518

Query: 386 LLDMFVSTALVAMYAKCGSIDDAEAVFK 413
                  T ++ +Y++ G   +AE   K
Sbjct: 519 Y------TCMIDLYSRSGRFKEAEEFIK 540



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 167/343 (48%), Gaps = 10/343 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E AK +F+ M + + ++W  ++ G  ++G   + + +F  M+       +++  ++L  
Sbjct: 228 IEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTA 287

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                  + G+ +HA   R     + F+  +LVDMYSKC     A  VF R+   ++++W
Sbjct: 288 CGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISW 347

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    Q  C +EA + F+ M+   +KP+ F L S++ +         G   H +   
Sbjct: 348 TAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALV 407

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G      V NALV++Y + G +    R+F+ ++  D VSW AL + +  +    + + +
Sbjct: 408 SGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDL 467

Query: 241 FYQMLLKGFKPNMCTFIVILKACSS--LSDVG---FGKQLHAHTIKHSLDGNHVVGTSLV 295
           F +ML+ G KP+  TFI +L ACS   L + G   F      H I   +D ++   T ++
Sbjct: 468 FEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIV-PIDDHY---TCMI 523

Query: 296 DMYDKSGCLEDAGVAFDSLAN-KDLFAYTAIITSYAQAGEAEM 337
           D+Y +SG  ++A      + +  D F +  +++S    G  E+
Sbjct: 524 DLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEI 566


>gi|413918573|gb|AFW58505.1| hypothetical protein ZEAMMB73_474993 [Zea mays]
          Length = 773

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 182/605 (30%), Positives = 319/605 (52%), Gaps = 11/605 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFS-KFSLSTVLKGFA 62
           A +VF+ MPE +VV+W A+++G   +G+  + +     M  +    S + +  T+  G  
Sbjct: 169 AVKVFEEMPERDVVAWTAVISGCVRNGESGEGLRYLVEMVRLAGDGSVRPNSRTMESGLE 228

Query: 63  NSGYI---KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             G +    +G+ +H   +++G      +  +L  MYSKC   ++A  +F  + + DVV+
Sbjct: 229 ACGVLDELNSGRCLHGYVVKVGIGDSPMVISALFSMYSKCYSTEDACALFLELPEKDVVS 288

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W ++I    ++G   EA ++F  M ES ++P++ +++ ++      G+   G++ HAVI 
Sbjct: 289 WTSLIGIYCRRGLITEAMELFQQMMESGLQPDEILVSCVLSGLGNNGNVHGGKTFHAVIT 348

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K  F    L+GNAL+SMY +   V    RVF  +  +D+ SWN +   +       + L 
Sbjct: 349 KRNFGDSVLIGNALISMYGKFEMVDSAGRVFRLLHQRDADSWNLMVVGYCKAGCDVKCLE 408

Query: 240 IFYQMLLKGFKPNMC---TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
           ++ +M L+      C   + +  + +CS L+++  G+  H ++IKH LD +  V   L+ 
Sbjct: 409 LYREMQLRDKYEFWCVADSLVSAISSCSRLAELRLGRSAHCYSIKHLLDEDSSVANVLIG 468

Query: 297 MYDKSGCLEDAGVAFDSLANK-DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
           MY + G  + A   F     K D+  +  +I+SYA  G +  A+  + +M +EG+  N  
Sbjct: 469 MYGRCGKFDHACKIFGLAKLKGDVVTWNTLISSYAHLGHSNAAMSLYDQMLIEGLTPNST 528

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
           TL + ++ C+ +  L  G  +HS   + G   D+ ++TAL+ MYAKCG +  A  +F   
Sbjct: 529 TLITVISACANLVALERGEKIHSYVKEMGWDYDVSINTALIDMYAKCGQLGIARRIFDSM 588

Query: 416 ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
              D  +WN+MI GY  HG  ++ALE F  M      P+ +TF+ +LSA  H GL+EEG+
Sbjct: 589 LQHDVVAWNVMISGYGMHGEAKQALELFGKMEGGSIKPNGVTFLAILSALCHSGLLEEGR 648

Query: 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
           K F+ + K Y + P +KH+ACM+D+LG++G   E E+ +    + P+  +W  LL AC  
Sbjct: 649 KVFTRMGK-YSLEPNLKHYACMVDLLGKSGHLQEAEDMVLAMPIEPDGGIWGTLLSACKL 707

Query: 536 HGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCS 595
           H N E+  + A+K    +P+ E  Y+  S+      +W++   +R  + + G++K     
Sbjct: 708 HDNFEMGLRIAKKAFASDPENEGYYILISNSYGGAKKWDEIEKLRETMKNLGVQK--GVG 765

Query: 596 WIEVD 600
           W  VD
Sbjct: 766 WSAVD 770



 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 157/581 (27%), Positives = 269/581 (46%), Gaps = 29/581 (4%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           LA   F + P  +   WN+L+  +  + D    +     M     + S F+        A
Sbjct: 63  LAALAFSASPRPDAFLWNSLIRTHHCASDFVAALSAHRRMLASGARPSPFTAPLAASASA 122

Query: 63  NSGYIKAGQVVHAMAIRLGCALDK----FLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
             G +  G  VHA  +R G  +       ++ SLV MY++CG   +A+KVF  + + DVV
Sbjct: 123 ELGALGVGAAVHAYCVRYGLLVGDGDSVAVASSLVYMYARCGNVRDAVKVFEEMPERDVV 182

Query: 119 AWGAIITCLDQQGCCQEAAK----IFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
           AW A+I+   + G   E  +    +  L  + SV+PN   + S + A     +   G  +
Sbjct: 183 AWTAVISGCVRNGESGEGLRYLVEMVRLAGDGSVRPNSRTMESGLEACGVLDELNSGRCL 242

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H  + K G     +V +AL SMY +         +F  +  +D VSW +L   +      
Sbjct: 243 HGYVVKVGIGDSPMVISALFSMYSKCYSTEDACALFLELPEKDVVSWTSLIGIYCRRGLI 302

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
            + + +F QM+  G +P+      +L    +  +V  GK  HA   K +   + ++G +L
Sbjct: 303 TEAMELFQQMMESGLQPDEILVSCVLSGLGNNGNVHGGKTFHAVITKRNFGDSVLIGNAL 362

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           + MY K   ++ AG  F  L  +D  ++  ++  Y +AG     L+ +R+M+L      E
Sbjct: 363 ISMYGKFEMVDSAGRVFRLLHQRDADSWNLMVVGYCKAGCDVKCLELYREMQLR--DKYE 420

Query: 355 F-----TLASCLNGCSPVATLANGRLLHSIAVKTGHLL--DMFVSTALVAMYAKCGSIDD 407
           F     +L S ++ CS +A L  GR  H  ++K  HLL  D  V+  L+ MY +CG  D 
Sbjct: 421 FWCVADSLVSAISSCSRLAELRLGRSAHCYSIK--HLLDEDSSVANVLIGMYGRCGKFDH 478

Query: 408 AEAVFKGSALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
           A  +F  + L+ D  +WN +I  Y   G    A+  +  ML EG  P+  T + V+SAC+
Sbjct: 479 ACKIFGLAKLKGDVVTWNTLISSYAHLGHSNAAMSLYDQMLIEGLTPNSTTLITVISACA 538

Query: 467 HMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVW 526
           ++  +E G+K  S +K++ G    +     +ID+  + G+   I   I ++ L  + + W
Sbjct: 539 NLVALERGEKIHSYVKEM-GWDYDVSINTALIDMYAKCGQLG-IARRIFDSMLQHDVVAW 596

Query: 527 ENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
             ++     HG       +A++ LEL  KME   + P+ ++
Sbjct: 597 NVMISGYGMHG-------EAKQALELFGKMEGGSIKPNGVT 630



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 141/499 (28%), Positives = 226/499 (45%), Gaps = 20/499 (4%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           VHA+A+  G      L+  LV  YS  G    A   F     PD   W ++I        
Sbjct: 32  VHALAVTSGLYQRPDLAAKLVSAYSSAGRPGLAALAFSASPRPDAFLWNSLIRTHHCASD 91

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF---ESDTL- 188
              A      M  S  +P+ F       A+ E G    G ++HA   +YG    + D++ 
Sbjct: 92  FVAALSAHRRMLASGARPSPFTAPLAASASAELGALGVGAAVHAYCVRYGLLVGDGDSVA 151

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML-LK 247
           V ++LV MY   G V    +VFE +  +D V+W A+ S         +GLR   +M+ L 
Sbjct: 152 VASSLVYMYARCGNVRDAVKVFEEMPERDVVAWTAVISGCVRNGESGEGLRYLVEMVRLA 211

Query: 248 G---FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
           G    +PN  T    L+AC  L ++  G+ LH + +K  +  + +V ++L  MY K    
Sbjct: 212 GDGSVRPNSRTMESGLEACGVLDELNSGRCLHGYVVKVGIGDSPMVISALFSMYSKCYST 271

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
           EDA   F  L  KD+ ++T++I  Y + G    A++ F++M   G++ +E  ++  L+G 
Sbjct: 272 EDACALFLELPEKDVVSWTSLIGIYCRRGLITEAMELFQQMMESGLQPDEILVSCVLSGL 331

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
                +  G+  H++  K      + +  AL++MY K   +D A  VF+    RD  SWN
Sbjct: 332 GNNGNVHGGKTFHAVITKRNFGDSVLIGNALISMYGKFEMVDSAGRVFRLLHQRDADSWN 391

Query: 425 MMIGGYVKHGLGEKALEAFR-MMLDEGY----VPDEITFVVVLSACSHMGLIEEGKK-HF 478
           +M+ GY K G   K LE +R M L + Y    V D  + V  +S+CS +  +  G+  H 
Sbjct: 392 LMVVGYCKAGCDVKCLELYREMQLRDKYEFWCVAD--SLVSAISSCSRLAELRLGRSAHC 449

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW--H 536
            SIK +     ++ +   +I + GR GKF          KL  + + W  L+ + +   H
Sbjct: 450 YSIKHLLDEDSSVANV--LIGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLISSYAHLGH 507

Query: 537 GNIELDEKDAEKLLELEPK 555
            N  +   D   +  L P 
Sbjct: 508 SNAAMSLYDQMLIEGLTPN 526



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 116/415 (27%), Positives = 197/415 (47%), Gaps = 10/415 (2%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E A  +F  +PE +VVSW +L+  Y   G   + M LF  M +   +  +  +S VL G 
Sbjct: 272 EDACALFLELPEKDVVSWTSLIGIYCRRGLITEAMELFQQMMESGLQPDEILVSCVLSGL 331

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
            N+G +  G+  HA+  +        +  +L+ MY K  + D+A +VF  +   D  +W 
Sbjct: 332 GNNGNVHGGKTFHAVITKRNFGDSVLIGNALISMYGKFEMVDSAGRVFRLLHQRDADSWN 391

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPN-QF-----VLTSLVRATTETGDQRCGESIH 175
            ++    + GC     K   L RE  ++   +F      L S + + +   + R G S H
Sbjct: 392 LMVVGYCKAGC---DVKCLELYREMQLRDKYEFWCVADSLVSAISSCSRLAELRLGRSAH 448

Query: 176 AVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFE-AIAHQDSVSWNALFSRFQDYESP 234
               K+  + D+ V N L+ MY   G+  +  ++F  A    D V+WN L S +      
Sbjct: 449 CYSIKHLLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLISSYAHLGHS 508

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
           +  + ++ QML++G  PN  T I ++ AC++L  +  G+++H++  +   D +  + T+L
Sbjct: 509 NAAMSLYDQMLIEGLTPNSTTLITVISACANLVALERGEKIHSYVKEMGWDYDVSINTAL 568

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           +DMY K G L  A   FDS+   D+ A+  +I+ Y   GEA+ AL+ F KM    IK N 
Sbjct: 569 IDMYAKCGQLGIARRIFDSMLQHDVVAWNVMISGYGMHGEAKQALELFGKMEGGSIKPNG 628

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
            T  + L+       L  GR + +   K     ++     +V +  K G + +AE
Sbjct: 629 VTFLAILSALCHSGLLEEGRKVFTRMGKYSLEPNLKHYACMVDLLGKSGHLQEAE 683



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 104/227 (45%), Gaps = 9/227 (3%)

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
           ++HA  +   L     +   LV  Y  +G    A +AF +    D F + ++I ++  A 
Sbjct: 31  RVHALAVTSGLYQRPDLAAKLVSAYSSAGRPGLAALAFSASPRPDAFLWNSLIRTHHCAS 90

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL----DM 389
           +   AL   R+M   G + + FT     +  + +  L  G  +H+  V+ G L+     +
Sbjct: 91  DFVAALSAHRRMLASGARPSPFTAPLAASASAELGALGVGAAVHAYCVRYGLLVGDGDSV 150

Query: 390 FVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKAL----EAFRM 445
            V+++LV MYA+CG++ DA  VF+    RD  +W  +I G V++G   + L    E  R+
Sbjct: 151 AVASSLVYMYARCGNVRDAVKVFEEMPERDVVAWTAVISGCVRNGESGEGLRYLVEMVRL 210

Query: 446 MLDEGYVPDEITFVVVLSACSHMGLIEEGK-KHFSSIKKIYGITPTI 491
             D    P+  T    L AC  +  +  G+  H   +K   G +P +
Sbjct: 211 AGDGSVRPNSRTMESGLEACGVLDELNSGRCLHGYVVKVGIGDSPMV 257


>gi|449481491|ref|XP_004156199.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g13880-like [Cucumis sativus]
          Length = 839

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 191/603 (31%), Positives = 316/603 (52%), Gaps = 7/603 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A ++F  M + N+V++N+L++GY +  +  KVM LF   + +  K  K++ +  L   + 
Sbjct: 113 ADKLFDKMSKSNIVTYNSLISGYVQMSNLDKVMILFDKARRLGLKLDKYTCAGALTACSQ 172

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           SG + AG+++H + +  G      L+ SL+DMYSKCG  D A  +F      D V+W ++
Sbjct: 173 SGNLSAGKMIHGLILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFDHSDKLDGVSWNSL 232

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTET--GDQRCGESIHAVICKY 181
           I    Q G  +E   I   M ++ +  N + L S ++A +    G +  G  +H    K 
Sbjct: 233 IAGYVQNGKYEELLTILQKMHQNGLAFNTYTLGSALKACSSNFNGCKMFGTMLHDHAIKL 292

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD-----Q 236
           G   D +VG AL+ MY + G +    ++F+ +  ++ V +NA+ +     E+ +     +
Sbjct: 293 GLHLDVVVGTALLDMYAKTGSLDDAIQIFDQMVDKNVVMYNAMMAGLLQQETIEDKCAYK 352

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            L +F++M   G KP+M T+  +LKAC  + D  F KQ+HA   K+ L  +  +G+ L+D
Sbjct: 353 ALNLFFEMKSCGIKPSMFTYSSLLKACIIVEDFKFAKQVHALMCKNGLLSDEYIGSILID 412

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           +Y   G + DA + F+S+ N  +   TA+I  Y Q GE E AL  F ++     K +EF 
Sbjct: 413 LYSVLGSMMDALLCFNSIHNLTIVPMTAMIXGYLQNGEFESALSLFYELLTYEEKPDEFI 472

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
            ++ ++ C+ +  L +G  +   A K G         + + MYAK G +  A   F+   
Sbjct: 473 XSTIMSSCANMGMLRSGEQIQGHATKVGISRFTIFQNSQIWMYAKSGDLYAANLTFQQME 532

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
             D  SW+ MI    +HG   +AL  F +M   G  P+   F+ VL ACSH GL+EEG +
Sbjct: 533 NPDIVSWSTMICSNAQHGHAMEALRFFELMKSCGIEPNHFAFLGVLIACSHRGLVEEGLR 592

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
           +F +++K Y +   +KH  C++D+LGRAG+  + E+ I         ++W  LL AC  H
Sbjct: 593 YFDTMEKDYKMKLHVKHCVCVVDLLGRAGRLADAESLILRLGFEHEPVMWRALLSACRIH 652

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSW 596
            +    ++ A+K++ELEP   ++YV   +I    G     S VR L+  + IKKEP  SW
Sbjct: 653 KDTVTAQRVAQKVIELEPLASASYVLLYNIYMDAGNKLAASKVRTLMEERRIKKEPGLSW 712

Query: 597 IEV 599
           I++
Sbjct: 713 IQI 715



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 141/496 (28%), Positives = 244/496 (49%), Gaps = 23/496 (4%)

Query: 57  VLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD 116
           +++    +G +  G++VH+  I+       FL  +L++MY KCG   +A K+F ++   +
Sbjct: 65  LVQSATKTGKLNHGKLVHSHMIKTSFRPCLFLQNNLLNMYCKCGDTRSADKLFDKMSKSN 124

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
           +V + ++I+   Q     +   +F+  R   +K +++     + A +++G+   G+ IH 
Sbjct: 125 IVTYNSLISGYVQMSNLDKVMILFDKARRLGLKLDKYTCAGALTACSQSGNLSAGKMIHG 184

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
           +I  YG  S  ++ N+L+ MY + G+V Y   +F+     D VSWN+L + +      ++
Sbjct: 185 LILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFDHSDKLDGVSWNSLIAGYVQNGKYEE 244

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSD--VGFGKQLHAHTIKHSLDGNHVVGTSL 294
            L I  +M   G   N  T    LKACSS  +    FG  LH H IK  L  + VVGT+L
Sbjct: 245 LLTILQKMHQNGLAFNTYTLGSALKACSSNFNGCKMFGTMLHDHAIKLGLHLDVVVGTAL 304

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAE-----MALKCFRKMRLEG 349
           +DMY K+G L+DA   FD + +K++  Y A++    Q    E      AL  F +M+  G
Sbjct: 305 LDMYAKTGSLDDAIQIFDQMVDKNVVMYNAMMAGLLQQETIEDKCAYKALNLFFEMKSCG 364

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           IK + FT +S L  C  V      + +H++  K G L D ++ + L+ +Y+  GS+ DA 
Sbjct: 365 IKPSMFTYSSLLKACIIVEDFKFAKQVHALMCKNGLLSDEYIGSILIDLYSVLGSMMDAL 424

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
             F             MI GY+++G  E AL  F  +L     PDE     ++S+C++MG
Sbjct: 425 LCFNSIHNLTIVPMTAMIXGYLQNGEFESALSLFYELLTYEEKPDEFIXSTIMSSCANMG 484

Query: 470 LIEEGKKHFSSIKKIYGIT-------PTIKHFACMIDILGRAGKFTEIENFITETKLTPN 522
           ++  G++      K+ GI+         I  +A   D+      F ++EN        P+
Sbjct: 485 MLRSGEQIQGHATKV-GISRFTIFQNSQIWMYAKSGDLYAANLTFQQMEN--------PD 535

Query: 523 ALVWENLLGACSWHGN 538
            + W  ++ + + HG+
Sbjct: 536 IVSWSTMICSNAQHGH 551



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 115/419 (27%), Positives = 212/419 (50%), Gaps = 8/419 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+ +F    +L+ VSWN+L+ GY ++G  ++++ +   M      F+ ++L + LK 
Sbjct: 211 VDYARILFDHSDKLDGVSWNSLIAGYVQNGKYEELLTILQKMHQNGLAFNTYTLGSALKA 270

Query: 61  FAN--SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
            ++  +G    G ++H  AI+LG  LD  +  +L+DMY+K G  D+A+++F ++ D +VV
Sbjct: 271 CSSNFNGCKMFGTMLHDHAIKLGLHLDVVVGTALLDMYAKTGSLDDAIQIFDQMVDKNVV 330

Query: 119 AWGAIITCLDQQ-----GCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES 173
            + A++  L QQ      C  +A  +F  M+   +KP+ F  +SL++A     D +  + 
Sbjct: 331 MYNAMMAGLLQQETIEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKACIIVEDFKFAKQ 390

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           +HA++CK G  SD  +G+ L+ +Y   G +      F +I +   V   A+   +     
Sbjct: 391 VHALMCKNGLLSDEYIGSILIDLYSVLGSMMDALLCFNSIHNLTIVPMTAMIXGYLQNGE 450

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
            +  L +FY++L    KP+      I+ +C+++  +  G+Q+  H  K  +    +   S
Sbjct: 451 FESALSLFYELLTYEEKPDEFIXSTIMSSCANMGMLRSGEQIQGHATKVGISRFTIFQNS 510

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
            + MY KSG L  A + F  + N D+ +++ +I S AQ G A  AL+ F  M+  GI+ N
Sbjct: 511 QIWMYAKSGDLYAANLTFQQMENPDIVSWSTMICSNAQHGHAMEALRFFELMKSCGIEPN 570

Query: 354 EFTLASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            F     L  CS    +  G R   ++       L +     +V +  + G + DAE++
Sbjct: 571 HFAFLGVLIACSHRGLVEEGLRYFDTMEKDYKMKLHVKHCVCVVDLLGRAGRLADAESL 629



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 148/314 (47%), Gaps = 12/314 (3%)

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
           ++ ++++ +    +  GK +H+H IK S      +  +L++MY K G    A   FD ++
Sbjct: 62  YVKLVQSATKTGKLNHGKLVHSHMIKTSFRPCLFLQNNLLNMYCKCGDTRSADKLFDKMS 121

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRL 375
             ++  Y ++I+ Y Q    +  +  F K R  G+K +++T A  L  CS    L+ G++
Sbjct: 122 KSNIVTYNSLISGYVQMSNLDKVMILFDKARRLGLKLDKYTCAGALTACSQSGNLSAGKM 181

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           +H + +  G    + ++ +L+ MY+KCG +D A  +F  S   D  SWN +I GYV++G 
Sbjct: 182 IHGLILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFDHSDKLDGVSWNSLIAGYVQNGK 241

Query: 436 GEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHF- 494
            E+ L   + M   G   +  T    L ACS       G K F ++   + I   + H  
Sbjct: 242 YEELLTILQKMHQNGLAFNTYTLGSALKACSSNF---NGCKMFGTMLHDHAIKLGL-HLD 297

Query: 495 ----ACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLL 550
                 ++D+  + G   +    I +  +  N +++  ++        IE  +K A K L
Sbjct: 298 VVVGTALLDMYAKTGSLDDAIQ-IFDQMVDKNVVMYNAMMAGLLQQETIE--DKCAYKAL 354

Query: 551 ELEPKMESNYVFPS 564
            L  +M+S  + PS
Sbjct: 355 NLFFEMKSCGIKPS 368


>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
 gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
          Length = 795

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 186/600 (31%), Positives = 317/600 (52%), Gaps = 3/600 (0%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVL-KG 60
           +LA  VF  M + NVV+W +L++ +  +G     M LF  M        + + +++L K 
Sbjct: 67  DLALDVFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFTSILLKW 126

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 +  G+ VH+  ++ G   D+ +   +V+MY KCG  + A  VF  I+DP+V +W
Sbjct: 127 SGRERNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSW 186

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA-VIC 179
             II    Q G C E  ++ + M ++ VKP+ +  T+++ A T  G     + +HA  I 
Sbjct: 187 TIIIAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATIS 246

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
             G + D  VG AL+++Y + G +     VF  I ++D VSW+++ + F         ++
Sbjct: 247 STGLDRDAAVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQ 306

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +   M L+G +PN  TF+ +L+A +SL    +GK++HA  ++     +  + ++LV MY 
Sbjct: 307 LLMLMDLEGVRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQAGYSDDVCLTSALVKMYC 366

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
             G +E A   F+S   +D+ +++++I  Y+Q      AL  FR+M ++G++ N  T  S
Sbjct: 367 NWGWVETARSIFESSRERDVVSWSSMIAGYSQNESPARALSLFREMEVDGVQPNSVTFVS 426

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            ++ C+ V  L  G  LH      G   D+ V+TALV +Y KCG +++AEAVF G   ++
Sbjct: 427 AIDACAGVGALRRGTQLHERVRCLGLDKDVPVATALVNLYGKCGRLEEAEAVFLGMKKKN 486

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             +W  +   Y ++G G ++L+    M  +G  PD I FV +L +C++ G + +G  +++
Sbjct: 487 LLTWTSIAMAYGQNGHGSRSLKLLHGMELQGMKPDGIVFVAILVSCNYAGQMSKGLHYYN 546

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
            + + +GI P ++H  CM+DILGRAGK    E  I   K   ++L W  LL AC  H + 
Sbjct: 547 LMTQDFGIAPAVEHCGCMVDILGRAGKLEAAEQLINTMKF-ESSLAWMMLLTACKAHNDT 605

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
               + AEK+ +LEPK  + YV  S +    G W      R  +  +G+++    S IE+
Sbjct: 606 ARAARAAEKIFQLEPKNATPYVLLSSVFCAAGSWEAAEETRRRMDGRGVQRLLGRSSIEI 665



 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 145/491 (29%), Positives = 260/491 (52%), Gaps = 9/491 (1%)

Query: 55  STVLKGFANSGYIKAGQVVHAMAIRLGCALDK-----FLSCSLVDMYSKCGLADNALKVF 109
           + +L   ++   +  G+ VH + +R     D+      L   ++ MY +CG  D AL VF
Sbjct: 14  AAILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGCTDLALDVF 73

Query: 110 YRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTS-LVRATTETGDQ 168
            R+KD +VVAW ++I+     G   +A  +F  M  S V P++   TS L++ +    + 
Sbjct: 74  DRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFTSILLKWSGRERNL 133

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228
             G+ +H+ I + G+E D +V N +V MY + G V     VF++I   +  SW  + + +
Sbjct: 134 DEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIIIAAY 193

Query: 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS-LDGN 287
                  + LR+  +M   G KP+  TF  +L AC+++  +   K LHA TI  + LD +
Sbjct: 194 AQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRD 253

Query: 288 HVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL 347
             VGT+L+++Y K G LE+A   F  + NKD+ +++++I ++AQ+G+A+ A++    M L
Sbjct: 254 AAVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLLMLMDL 313

Query: 348 EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
           EG++ N  T  + L   + +     G+ +H+  V+ G+  D+ +++ALV MY   G ++ 
Sbjct: 314 EGVRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQAGYSDDVCLTSALVKMYCNWGWVET 373

Query: 408 AEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
           A ++F+ S  RD  SW+ MI GY ++    +AL  FR M  +G  P+ +TFV  + AC+ 
Sbjct: 374 ARSIFESSRERDVVSWSSMIAGYSQNESPARALSLFREMEVDGVQPNSVTFVSAIDACAG 433

Query: 468 MGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWE 527
           +G +  G +    ++ + G+   +     ++++ G+ G+  E E      K   N L W 
Sbjct: 434 VGALRRGTQLHERVRCL-GLDKDVPVATALVNLYGKCGRLEEAEAVFLGMK-KKNLLTWT 491

Query: 528 NLLGACSWHGN 538
           ++  A   +G+
Sbjct: 492 SIAMAYGQNGH 502



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 133/471 (28%), Positives = 228/471 (48%), Gaps = 14/471 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  VF S+ + NV SW  ++  YA++G   +V+ L   M     K   ++ +TVL  
Sbjct: 168 VEQAGNVFDSIQDPNVFSWTIIIAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGA 227

Query: 61  FANSGYIKAGQVVHAMAI-RLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
               G ++  +++HA  I   G   D  +  +L+++Y KCG  + A  VF +I + D+V+
Sbjct: 228 CTAVGALEEAKILHAATISSTGLDRDAAVGTALINLYGKCGALEEAFGVFVQIDNKDIVS 287

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W ++I    Q G  + A ++  LM    V+PN     +++ A T     + G+ IHA I 
Sbjct: 288 WSSMIAAFAQSGQAKSAIQLLMLMDLEGVRPNNVTFVNVLEAVTSLKAFQYGKEIHARIV 347

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           + G+  D  + +ALV MY   G V     +FE+   +D VSW+++ + +   ESP + L 
Sbjct: 348 QAGYSDDVCLTSALVKMYCNWGWVETARSIFESSRERDVVSWSSMIAGYSQNESPARALS 407

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F +M + G +PN  TF+  + AC+ +  +  G QLH       LD +  V T+LV++Y 
Sbjct: 408 LFREMEVDGVQPNSVTFVSAIDACAGVGALRRGTQLHERVRCLGLDKDVPVATALVNLYG 467

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G LE+A   F  +  K+L  +T+I  +Y Q G    +LK    M L+G+K +     +
Sbjct: 468 KCGRLEEAEAVFLGMKKKNLLTWTSIAMAYGQNGHGSRSLKLLHGMELQGMKPDGIVFVA 527

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA------LVAMYAKCGSIDDAEAVFK 413
            L  C+    ++ G  LH   + T    D  ++ A      +V +  + G ++ AE +  
Sbjct: 528 ILVSCNYAGQMSKG--LHYYNLMTQ---DFGIAPAVEHCGCMVDILGRAGKLEAAEQLIN 582

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
                 + +W M++     H    +A  A   +      P   T  V+LS+
Sbjct: 583 TMKFESSLAWMMLLTACKAHNDTARAARAAEKIFQ--LEPKNATPYVLLSS 631


>gi|449447749|ref|XP_004141630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Cucumis sativus]
          Length = 746

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 191/603 (31%), Positives = 316/603 (52%), Gaps = 7/603 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A ++F  M + N+V++N+L++GY +  +  KVM LF   + +  K  K++ +  L   + 
Sbjct: 20  ADKLFDKMSKSNIVTYNSLISGYVQMSNLDKVMILFDKARRLGLKLDKYNCAGALTACSQ 79

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           SG + AG+++H + +  G      L+ SL+DMYSKCG  D A  +F      D V+W ++
Sbjct: 80  SGNLSAGKMIHGLILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFDHSDKLDGVSWNSL 139

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTET--GDQRCGESIHAVICKY 181
           I    Q G  +E   I   M ++ +  N + L S ++A +    G +  G  +H    K 
Sbjct: 140 IAGYVQNGKYEELLTILQKMHQNGLAFNTYTLGSALKACSSNFNGCKMFGTMLHDHAIKL 199

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD-----Q 236
           G   D +VG AL+ MY + G +    ++F+ +  ++ V +NA+ +     E+ +     +
Sbjct: 200 GLHLDVVVGTALLDMYAKTGSLDDAIQIFDQMVDKNVVMYNAMMAGLLQQETIEDKCAYK 259

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            L +F++M   G KP+M T+  +LKAC  + D  F KQ+HA   K+ L  +  +G+ L+D
Sbjct: 260 ALNLFFEMKSCGIKPSMFTYSSLLKACIIVEDFKFAKQVHALMCKNGLLSDEYIGSILID 319

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           +Y   G + DA + F+S+ N  +   TA+I  Y Q GE E AL  F ++     K +EF 
Sbjct: 320 LYSVLGSMMDALLCFNSIHNLTIVPMTAMIFGYLQNGEFESALSLFYELLTYEEKPDEFI 379

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
            ++ ++ C+ +  L +G  +   A K G         + + MYAK G +  A   F+   
Sbjct: 380 FSTIMSSCANMGMLRSGEQIQGHATKVGISRFTIFQNSQIWMYAKSGDLYAANLTFQQME 439

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
             D  SW+ MI    +HG   +AL  F +M   G  P+   F+ VL ACSH GL+EEG +
Sbjct: 440 NPDIVSWSTMICSNAQHGHAMEALRFFELMKSCGIEPNHFAFLGVLIACSHRGLVEEGLR 499

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
           +F +++K Y +   +KH  C++D+LGRAG+  + E+ I         ++W  LL AC  H
Sbjct: 500 YFDTMEKDYKMKLHVKHCVCVVDLLGRAGRLADAESLILRLGFEHEPVMWRALLSACRIH 559

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSW 596
            +    ++ A+K++ELEP   ++YV   +I    G     S VR L+  + IKKEP  SW
Sbjct: 560 KDTVTAQRVAQKVIELEPLASASYVLLYNIYMDAGNKLAASKVRTLMEERRIKKEPGLSW 619

Query: 597 IEV 599
           I++
Sbjct: 620 IQI 622



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 132/455 (29%), Positives = 223/455 (49%), Gaps = 23/455 (5%)

Query: 98  KCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTS 157
           KCG   +A K+F ++   ++V + ++I+   Q     +   +F+  R   +K +++    
Sbjct: 13  KCGDTRSADKLFDKMSKSNIVTYNSLISGYVQMSNLDKVMILFDKARRLGLKLDKYNCAG 72

Query: 158 LVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQD 217
            + A +++G+   G+ IH +I  YG  S  ++ N+L+ MY + G+V Y   +F+     D
Sbjct: 73  ALTACSQSGNLSAGKMIHGLILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFDHSDKLD 132

Query: 218 SVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSD--VGFGKQL 275
            VSWN+L + +      ++ L I  +M   G   N  T    LKACSS  +    FG  L
Sbjct: 133 GVSWNSLIAGYVQNGKYEELLTILQKMHQNGLAFNTYTLGSALKACSSNFNGCKMFGTML 192

Query: 276 HAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEA 335
           H H IK  L  + VVGT+L+DMY K+G L+DA   FD + +K++  Y A++    Q    
Sbjct: 193 HDHAIKLGLHLDVVVGTALLDMYAKTGSLDDAIQIFDQMVDKNVVMYNAMMAGLLQQETI 252

Query: 336 E-----MALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
           E      AL  F +M+  GIK + FT +S L  C  V      + +H++  K G L D +
Sbjct: 253 EDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKACIIVEDFKFAKQVHALMCKNGLLSDEY 312

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
           + + L+ +Y+  GS+ DA   F             MI GY+++G  E AL  F  +L   
Sbjct: 313 IGSILIDLYSVLGSMMDALLCFNSIHNLTIVPMTAMIFGYLQNGEFESALSLFYELLTYE 372

Query: 451 YVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGIT-------PTIKHFACMIDILGR 503
             PDE  F  ++S+C++MG++  G++      K+ GI+         I  +A   D+   
Sbjct: 373 EKPDEFIFSTIMSSCANMGMLRSGEQIQGHATKV-GISRFTIFQNSQIWMYAKSGDLYAA 431

Query: 504 AGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
              F ++EN        P+ + W  ++ + + HG+
Sbjct: 432 NLTFQQMEN--------PDIVSWSTMICSNAQHGH 458



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 116/419 (27%), Positives = 213/419 (50%), Gaps = 8/419 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+ +F    +L+ VSWN+L+ GY ++G  ++++ +   M      F+ ++L + LK 
Sbjct: 118 VDYARILFDHSDKLDGVSWNSLIAGYVQNGKYEELLTILQKMHQNGLAFNTYTLGSALKA 177

Query: 61  FAN--SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
            ++  +G    G ++H  AI+LG  LD  +  +L+DMY+K G  D+A+++F ++ D +VV
Sbjct: 178 CSSNFNGCKMFGTMLHDHAIKLGLHLDVVVGTALLDMYAKTGSLDDAIQIFDQMVDKNVV 237

Query: 119 AWGAIITCLDQQ-----GCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES 173
            + A++  L QQ      C  +A  +F  M+   +KP+ F  +SL++A     D +  + 
Sbjct: 238 MYNAMMAGLLQQETIEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKACIIVEDFKFAKQ 297

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           +HA++CK G  SD  +G+ L+ +Y   G +      F +I +   V   A+   +     
Sbjct: 298 VHALMCKNGLLSDEYIGSILIDLYSVLGSMMDALLCFNSIHNLTIVPMTAMIFGYLQNGE 357

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
            +  L +FY++L    KP+   F  I+ +C+++  +  G+Q+  H  K  +    +   S
Sbjct: 358 FESALSLFYELLTYEEKPDEFIFSTIMSSCANMGMLRSGEQIQGHATKVGISRFTIFQNS 417

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
            + MY KSG L  A + F  + N D+ +++ +I S AQ G A  AL+ F  M+  GI+ N
Sbjct: 418 QIWMYAKSGDLYAANLTFQQMENPDIVSWSTMICSNAQHGHAMEALRFFELMKSCGIEPN 477

Query: 354 EFTLASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            F     L  CS    +  G R   ++       L +     +V +  + G + DAE++
Sbjct: 478 HFAFLGVLIACSHRGLVEEGLRYFDTMEKDYKMKLHVKHCVCVVDLLGRAGRLADAESL 536



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 123/270 (45%), Gaps = 12/270 (4%)

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G    A   FD ++  ++  Y ++I+ Y Q    +  +  F K R  G+K +++  A 
Sbjct: 13  KCGDTRSADKLFDKMSKSNIVTYNSLISGYVQMSNLDKVMILFDKARRLGLKLDKYNCAG 72

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L  CS    L+ G+++H + +  G    + ++ +L+ MY+KCG +D A  +F  S   D
Sbjct: 73  ALTACSQSGNLSAGKMIHGLILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFDHSDKLD 132

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SWN +I GYV++G  E+ L   + M   G   +  T    L ACS       G K F 
Sbjct: 133 GVSWNSLIAGYVQNGKYEELLTILQKMHQNGLAFNTYTLGSALKACSSNF---NGCKMFG 189

Query: 480 SIKKIYGITPTIKHF-----ACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
           ++   + I   + H        ++D+  + G   +    I +  +  N +++  ++    
Sbjct: 190 TMLHDHAIKLGL-HLDVVVGTALLDMYAKTGSLDDAIQ-IFDQMVDKNVVMYNAMMAGLL 247

Query: 535 WHGNIELDEKDAEKLLELEPKMESNYVFPS 564
               IE  +K A K L L  +M+S  + PS
Sbjct: 248 QQETIE--DKCAYKALNLFFEMKSCGIKPS 275



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 79/207 (38%), Gaps = 15/207 (7%)

Query: 389 MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
           MF      +   KCG    A+ +F   +  +  ++N +I GYV+    +K +  F     
Sbjct: 1   MFHMLPFSSRQCKCGDTRSADKLFDKMSKSNIVTYNSLISGYVQMSNLDKVMILFDKARR 60

Query: 449 EGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFT 508
            G   D+      L+ACS  G +  GK     +  +YG+   +     +ID+  + G+  
Sbjct: 61  LGLKLDKYNCAGALTACSQSGNLSAGKM-IHGLILVYGLGSQVVLTNSLIDMYSKCGQ-V 118

Query: 509 EIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESN------YVF 562
           +    + +     + + W +L+     +G         E+LL +  KM  N      Y  
Sbjct: 119 DYARILFDHSDKLDGVSWNSLIAGYVQNGKY-------EELLTILQKMHQNGLAFNTYTL 171

Query: 563 PSDISATQGRWNDFSGVRALLSSQGIK 589
            S + A    +N       +L    IK
Sbjct: 172 GSALKACSSNFNGCKMFGTMLHDHAIK 198


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 167/462 (36%), Positives = 270/462 (58%), Gaps = 1/462 (0%)

Query: 139 IFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYM 198
           + +L+   S++P + + + ++   T     + G +IHA I    FE D ++ N +++MY 
Sbjct: 92  VLDLINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYA 151

Query: 199 ENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIV 258
           + G +     +F+ +  +D VSW  L S +       + L +F +ML  GF+PN  T   
Sbjct: 152 KCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSS 211

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKD 318
           +LKA  +      G+QLHA ++K+  D N  VG+SL+DMY +   + +A V F+SLA K+
Sbjct: 212 LLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKN 271

Query: 319 LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHS 378
           + ++ A+I  +A+ GE E  ++ F +M  +G +   FT +S    C+   +L  G+ +H+
Sbjct: 272 VVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHA 331

Query: 379 IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEK 438
             +K+G     ++   L+ MYAK GSI DA+ VF+    +D  SWN +I GY +HGLG +
Sbjct: 332 HVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAE 391

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMI 498
           AL+ F  ML     P+EITF+ VL+ACSH GL++EG+ +F  +KK + I   + H   ++
Sbjct: 392 ALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKK-HKIEAQVAHHVTVV 450

Query: 499 DILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMES 558
           D+LGRAG+  E   FI E  + P A VW  LLG+C  H N++L    AE++ EL+P    
Sbjct: 451 DLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSG 510

Query: 559 NYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
            +V  S+I A+ GR +D + VR ++   G+KKEP+CSW+E++
Sbjct: 511 PHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIE 552



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 111/374 (29%), Positives = 186/374 (49%), Gaps = 13/374 (3%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +K G+ +HA         D  L   +++MY+KCG  + A  +F ++   D+V+W  +I+ 
Sbjct: 121 LKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISG 180

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             Q G   EA  +F  M     +PN+F L+SL++A+        G  +HA   KYG++ +
Sbjct: 181 YSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMN 240

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             VG++L+ MY     +     +F ++A ++ VSWNAL +        +  +R+F QML 
Sbjct: 241 VHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLR 300

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           +GF+P   T+  +  AC+S   +  GK +HAH IK        +G +L+DMY KSG ++D
Sbjct: 301 QGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKD 360

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A   F  L  +D+ ++ +II+ YAQ G    AL+ F +M    ++ NE T  S L  CS 
Sbjct: 361 AKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSH 420

Query: 367 VATLANGRLL------HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
              L  G+        H I  +  H         +V +  + G +++A    +   ++ T
Sbjct: 421 SGLLDEGQYYFELMKKHKIEAQVAH------HVTVVDLLGRAGRLNEANKFIEEMPIKPT 474

Query: 421 AS-WNMMIGGYVKH 433
           A+ W  ++G    H
Sbjct: 475 AAVWGALLGSCRMH 488



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 163/317 (51%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ +F  MP  ++VSW  L++GY++SG   + + LF  M  +  + ++F+LS++LK 
Sbjct: 156 LEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKA 215

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                    G+ +HA +++ G  ++  +  SL+DMY++      A  +F  +   +VV+W
Sbjct: 216 SGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSW 275

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    ++G  +   ++F  M     +P  F  +S+  A   +G    G+ +HA + K
Sbjct: 276 NALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIK 335

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G +    +GN L+ MY ++G +    +VF  +  QD VSWN++ S +  +    + L++
Sbjct: 336 SGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQL 395

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QML    +PN  TF+ +L ACS    +  G+       KH ++       ++VD+  +
Sbjct: 396 FEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGR 455

Query: 301 SGCLEDAGVAFDSLANK 317
           +G L +A    + +  K
Sbjct: 456 AGRLNEANKFIEEMPIK 472


>gi|356534091|ref|XP_003535591.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic-like [Glycine max]
          Length = 903

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 186/587 (31%), Positives = 308/587 (52%), Gaps = 2/587 (0%)

Query: 15  NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKA-GQVV 73
           +VVSW  +++   E+    + + L+  M +     ++F+   +L   +  G  K  G+V+
Sbjct: 182 DVVSWTTMISSLVETSKWSEALQLYVKMIEAGIYPNEFTFVKLLGMPSFLGLGKGYGKVL 241

Query: 74  HAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCC 133
           H+  I  G  ++  L  +++ MY+KC   ++A+KV  +    DV  W +II+   Q    
Sbjct: 242 HSQLITFGVEMNLMLKTAIICMYAKCRRMEDAIKVSQQTPKYDVCLWTSIISGFVQNSQV 301

Query: 134 QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNAL 193
           +EA      M  S + PN F   SL+ A++       GE  H+ +   G E D  VGNAL
Sbjct: 302 REAVNALVDMELSGILPNNFTYASLLNASSSVLSLELGEQFHSRVIMVGLEGDIYVGNAL 361

Query: 194 VSMYME-NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           V MYM+ +   + G + F  IA  + +SW +L + F ++   ++ +++F +M   G +PN
Sbjct: 362 VDMYMKCSHTTTNGVKAFRGIALPNVISWTSLIAGFAEHGFEEESVQLFAEMQAAGVQPN 421

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
             T   IL ACS +  +   K+LH + IK  +D +  VG +LVD Y   G  ++A     
Sbjct: 422 SFTLSTILGACSKMKSIIQTKKLHGYIIKTQVDIDMAVGNALVDAYAGGGMADEAWSVIG 481

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
            + ++D+  YT +     Q G+ EMAL+    M  + +K +EF+LAS ++  + +  +  
Sbjct: 482 MMNHRDIITYTTLAARLNQQGDHEMALRVITHMCNDEVKMDEFSLASFISAAAGLGIMET 541

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
           G+ LH  + K+G      VS +LV  Y+KCGS+ DA  VFK     D  SWN +I G   
Sbjct: 542 GKQLHCYSFKSGFERCNSVSNSLVHSYSKCGSMRDAYRVFKDITEPDRVSWNGLISGLAS 601

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK 492
           +GL   AL AF  M   G  PD +TF+ ++ ACS   L+ +G  +F S++K Y ITP + 
Sbjct: 602 NGLISDALSAFDDMRLAGVKPDSVTFLSLIFACSQGSLLNQGLDYFYSMEKTYHITPKLD 661

Query: 493 HFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLEL 552
           H+ C++D+LGR G+  E    I      P++++++ LL AC+ HGN+ L E  A + LEL
Sbjct: 662 HYVCLVDLLGRGGRLEEAMGVIETMPFKPDSVIYKTLLNACNLHGNVPLGEDMARRCLEL 721

Query: 553 EPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +P   + Y+  + +    G  +     R L+  +G+++ P   W+EV
Sbjct: 722 DPCDPAIYLLLASLYDNAGLPDFGDKTRKLMRERGLRRSPRQCWMEV 768



 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 137/475 (28%), Positives = 241/475 (50%), Gaps = 2/475 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F  MP  +VVSW  LL+ +  +    + + LF  M    +  ++F+LS+ L+  + 
Sbjct: 70  ARHLFDEMPHRDVVSWTTLLSAHTRNKHHFEALQLFDMMLGSGQCPNEFTLSSALRSCSA 129

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G  + G  +HA  ++LG  L+  L  +LVD+Y+KC       K+   +KD DVV+W  +
Sbjct: 130 LGEFEFGAKIHASVVKLGLELNHVLGTTLVDLYTKCDCTVEPHKLLAFVKDGDVVSWTTM 189

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG-DQRCGESIHAVICKYG 182
           I+ L +     EA +++  M E+ + PN+F    L+   +  G  +  G+ +H+ +  +G
Sbjct: 190 ISSLVETSKWSEALQLYVKMIEAGIYPNEFTFVKLLGMPSFLGLGKGYGKVLHSQLITFG 249

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            E + ++  A++ MY +  R+    +V +     D   W ++ S F       + +    
Sbjct: 250 VEMNLMLKTAIICMYAKCRRMEDAIKVSQQTPKYDVCLWTSIISGFVQNSQVREAVNALV 309

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            M L G  PN  T+  +L A SS+  +  G+Q H+  I   L+G+  VG +LVDMY K  
Sbjct: 310 DMELSGILPNNFTYASLLNASSSVLSLELGEQFHSRVIMVGLEGDIYVGNALVDMYMKCS 369

Query: 303 CLEDAGV-AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
                GV AF  +A  ++ ++T++I  +A+ G  E +++ F +M+  G++ N FTL++ L
Sbjct: 370 HTTTNGVKAFRGIALPNVISWTSLIAGFAEHGFEEESVQLFAEMQAAGVQPNSFTLSTIL 429

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
             CS + ++   + LH   +KT   +DM V  ALV  YA  G  D+A +V      RD  
Sbjct: 430 GACSKMKSIIQTKKLHGYIIKTQVDIDMAVGNALVDAYAGGGMADEAWSVIGMMNHRDII 489

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
           ++  +     + G  E AL     M ++    DE +    +SA + +G++E GK+
Sbjct: 490 TYTTLAARLNQQGDHEMALRVITHMCNDEVKMDEFSLASFISAAAGLGIMETGKQ 544



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 132/425 (31%), Positives = 212/425 (49%), Gaps = 2/425 (0%)

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             NS  +K G  VH+  I++G   D +LS +L+ +Y+KC     A  +F  +   DVV+W
Sbjct: 26  LCNSQTLKEGACVHSPIIKVGLQHDLYLSNNLLCLYAKCFGVGQARHLFDEMPHRDVVSW 85

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +++   +     EA ++F++M  S   PN+F L+S +R+ +  G+   G  IHA + K
Sbjct: 86  TTLLSAHTRNKHHFEALQLFDMMLGSGQCPNEFTLSSALRSCSALGEFEFGAKIHASVVK 145

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G E + ++G  LV +Y +        ++   +   D VSW  + S   +     + L++
Sbjct: 146 LGLELNHVLGTTLVDLYTKCDCTVEPHKLLAFVKDGDVVSWTTMISSLVETSKWSEALQL 205

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLS-DVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           + +M+  G  PN  TF+ +L   S L    G+GK LH+  I   ++ N ++ T+++ MY 
Sbjct: 206 YVKMIEAGIYPNEFTFVKLLGMPSFLGLGKGYGKVLHSQLITFGVEMNLMLKTAIICMYA 265

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K   +EDA          D+  +T+II+ + Q  +   A+     M L GI  N FT AS
Sbjct: 266 KCRRMEDAIKVSQQTPKYDVCLWTSIISGFVQNSQVREAVNALVDMELSGILPNNFTYAS 325

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG-SIDDAEAVFKGSALR 418
            LN  S V +L  G   HS  +  G   D++V  ALV MY KC  +  +    F+G AL 
Sbjct: 326 LLNASSSVLSLELGEQFHSRVIMVGLEGDIYVGNALVDMYMKCSHTTTNGVKAFRGIALP 385

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           +  SW  +I G+ +HG  E++++ F  M   G  P+  T   +L ACS M  I + KK  
Sbjct: 386 NVISWTSLIAGFAEHGFEEESVQLFAEMQAAGVQPNSFTLSTILGACSKMKSIIQTKKLH 445

Query: 479 SSIKK 483
             I K
Sbjct: 446 GYIIK 450



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 114/411 (27%), Positives = 201/411 (48%), Gaps = 8/411 (1%)

Query: 146 SSVKPNQFVLTSL-VRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVS 204
           +S  P +F  T L V +   +   + G  +H+ I K G + D  + N L+ +Y +   V 
Sbjct: 9   NSFSPCRFRETCLQVLSLCNSQTLKEGACVHSPIIKVGLQHDLYLSNNLLCLYAKCFGVG 68

Query: 205 YGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACS 264
               +F+ + H+D VSW  L S     +   + L++F  ML  G  PN  T    L++CS
Sbjct: 69  QARHLFDEMPHRDVVSWTTLLSAHTRNKHHFEALQLFDMMLGSGQCPNEFTLSSALRSCS 128

Query: 265 SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA 324
           +L +  FG ++HA  +K  L+ NHV+GT+LVD+Y K  C  +       + + D+ ++T 
Sbjct: 129 ALGEFEFGAKIHASVVKLGLELNHVLGTTLVDLYTKCDCTVEPHKLLAFVKDGDVVSWTT 188

Query: 325 IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN--GRLLHSIAVK 382
           +I+S  +  +   AL+ + KM   GI  NEFT    L G      L    G++LHS  + 
Sbjct: 189 MISSLVETSKWSEALQLYVKMIEAGIYPNEFTFVKLL-GMPSFLGLGKGYGKVLHSQLIT 247

Query: 383 TGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEA 442
            G  +++ + TA++ MYAKC  ++DA  V + +   D   W  +I G+V++    +A+ A
Sbjct: 248 FGVEMNLMLKTAIICMYAKCRRMEDAIKVSQQTPKYDVCLWTSIISGFVQNSQVREAVNA 307

Query: 443 FRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILG 502
              M   G +P+  T+  +L+A S +  +E G++  S +  + G+   I     ++D+  
Sbjct: 308 LVDMELSGILPNNFTYASLLNASSSVLSLELGEQFHSRVIMV-GLEGDIYVGNALVDMYM 366

Query: 503 RAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELE 553
           +    T            PN + W +L+   + HG    +E+  +   E++
Sbjct: 367 KCSHTTTNGVKAFRGIALPNVISWTSLIAGFAEHG---FEEESVQLFAEMQ 414



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 103/347 (29%), Positives = 162/347 (46%), Gaps = 14/347 (4%)

Query: 6   RVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSG 65
           + F+ +   NV+SW +L+ G+AE G  ++ + LF  M+    + + F+LST+L   +   
Sbjct: 377 KAFRGIALPNVISWTSLIAGFAEHGFEEESVQLFAEMQAAGVQPNSFTLSTILGACSKMK 436

Query: 66  YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT 125
            I   + +H   I+    +D  +  +LVD Y+  G+AD A  V   +   D++ +  +  
Sbjct: 437 SIIQTKKLHGYIIKTQVDIDMAVGNALVDAYAGGGMADEAWSVIGMMNHRDIITYTTLAA 496

Query: 126 CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
            L+QQG  + A ++   M    VK ++F L S + A    G    G+ +H    K GFE 
Sbjct: 497 RLNQQGDHEMALRVITHMCNDEVKMDEFSLASFISAAAGLGIMETGKQLHCYSFKSGFER 556

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
              V N+LV  Y + G +    RVF+ I   D VSWN L S           L  F  M 
Sbjct: 557 CNSVSNSLVHSYSKCGSMRDAYRVFKDITEPDRVSWNGLISGLASNGLISDALSAFDDMR 616

Query: 246 LKGFKPNMCTFIVILKACS--SLSDVG---FGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           L G KP+  TF+ ++ ACS  SL + G   F      + I   LD  H V   LVD+  +
Sbjct: 617 LAGVKPDSVTFLSLIFACSQGSLLNQGLDYFYSMEKTYHITPKLD--HYV--CLVDLLGR 672

Query: 301 SGCLEDAGVAFDSLANK-DLFAYTAIITSYAQAGEA----EMALKCF 342
            G LE+A    +++  K D   Y  ++ +    G      +MA +C 
Sbjct: 673 GGRLEEAMGVIETMPFKPDSVIYKTLLNACNLHGNVPLGEDMARRCL 719



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 6/139 (4%)

Query: 352 SNEFTLASCLNGCSPVATLANGRLL------HSIAVKTGHLLDMFVSTALVAMYAKCGSI 405
           SN F+       C  V +L N + L      HS  +K G   D+++S  L+ +YAKC  +
Sbjct: 8   SNSFSPCRFRETCLQVLSLCNSQTLKEGACVHSPIIKVGLQHDLYLSNNLLCLYAKCFGV 67

Query: 406 DDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC 465
             A  +F     RD  SW  ++  + ++    +AL+ F MML  G  P+E T    L +C
Sbjct: 68  GQARHLFDEMPHRDVVSWTTLLSAHTRNKHHFEALQLFDMMLGSGQCPNEFTLSSALRSC 127

Query: 466 SHMGLIEEGKKHFSSIKKI 484
           S +G  E G K  +S+ K+
Sbjct: 128 SALGEFEFGAKIHASVVKL 146


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  331 bits (849), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 185/522 (35%), Positives = 281/522 (53%), Gaps = 2/522 (0%)

Query: 80  LGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKI 139
           LG   ++FL   L+D+Y+KC   D+AL VF+ I+  +V +W  ++    +          
Sbjct: 4   LGWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLF 63

Query: 140 FNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYME 199
           F  M    + P +  ++  + A T+  +   G SI   I   G E +++V  ALVS+Y +
Sbjct: 64  FRGMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGK 123

Query: 200 NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVI 259
            G  +  + VF  ++H+D V+W+A+ + +     P + L +F QM L G  PN  T +  
Sbjct: 124 LGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSG 183

Query: 260 LKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL 319
           L AC+SL D+  G  +H       +    VVGT+LV++Y K G +E A  AF  +  K++
Sbjct: 184 LDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNV 243

Query: 320 FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHS- 378
            A++AI  +YA+      A++   +M LEG+  N  T  S L+ C+ +A L  GR +H  
Sbjct: 244 VAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHER 303

Query: 379 IAVKTGHL-LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGE 437
           I V  G L  D++V TALV MY+KCG++  A  +F   A  D   WN +I    +HG  E
Sbjct: 304 IHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHGQTE 363

Query: 438 KALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACM 497
           KALE F  M  EG  P  ITF  VL ACSH G++++G+KHF S    +GI P  +HF CM
Sbjct: 364 KALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCM 423

Query: 498 IDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKME 557
           +D+LGRAG   + E+ +      P+ + W   LGAC  + N++     AE L +L+P+  
Sbjct: 424 VDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDGAIWAAENLFQLDPRKR 483

Query: 558 SNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           + YV  S++ A  GRW+D + +R  +      KE   SWIEV
Sbjct: 484 APYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEV 525



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 115/370 (31%), Positives = 188/370 (50%), Gaps = 2/370 (0%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           VF  +   NV SW  +L  +AE+ D  +    F  M        +  +S  L    ++  
Sbjct: 32  VFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFFRGMLLQGINPGEVGISIFLSACTDARE 91

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           I  G+ +    +  G   +  +  +LV +Y K G   +A  VF R+   DVVAW A++  
Sbjct: 92  ITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTDAASVFLRMSHRDVVAWSAMVAA 151

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             + G  +EA  +F  M    V PN+  L S + A    GD R G  +H  +   G +S 
Sbjct: 152 YARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSG 211

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
            +VG ALV++Y + GR+   +  F  I  ++ V+W+A+ + +   +     +R+ ++M L
Sbjct: 212 VVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDL 271

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHA--HTIKHSLDGNHVVGTSLVDMYDKSGCL 304
           +G  PN  TF+ +L AC++++ +  G+++H   H +   L+ +  V T+LV+MY K G L
Sbjct: 272 EGLAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLESDVYVLTALVNMYSKCGNL 331

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
             AG  FD +A+ DL  + ++I + AQ G+ E AL+ F +MRLEG++    T  S L  C
Sbjct: 332 ALAGNMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFAC 391

Query: 365 SPVATLANGR 374
           S    L  GR
Sbjct: 392 SHAGMLDQGR 401



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 2/168 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A   F  + E NVV+W+A+   YA +   +  + +   M       +  +  +VL  
Sbjct: 228 IEAAAEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDA 287

Query: 61  FANSGYIKAGQVVHAMAIRLGCAL--DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
            A    +K G+ +H     LG  L  D ++  +LV+MYSKCG    A  +F +I   D+V
Sbjct: 288 CAAIAALKQGRRIHERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLV 347

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
            W ++I    Q G  ++A ++F  MR   ++P     TS++ A +  G
Sbjct: 348 LWNSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAG 395



 Score = 40.0 bits (92), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 24/157 (15%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + LA  +F  +  L++V WN+L+   A+ G  +K + LF  M+    + +  + ++VL  
Sbjct: 331 LALAGNMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFA 390

Query: 61  FANSGYIKAGQV----------VHAMAIRLGCALDKFLSCSLVDMYSKCG-LADNALKVF 109
            +++G +  G+           +   A   GC         +VD+  + G + D+   + 
Sbjct: 391 CSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGC---------MVDLLGRAGWIVDSEDLLL 441

Query: 110 YRIKDPDVVAW----GAIITCLDQQGCCQEAAKIFNL 142
           +   +P  VAW    GA  T  +  G    A  +F L
Sbjct: 442 HMPFEPHPVAWMAFLGACRTYRNMDGAIWAAENLFQL 478


>gi|357118484|ref|XP_003560984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial-like [Brachypodium distachyon]
          Length = 678

 Score =  331 bits (849), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 183/602 (30%), Positives = 305/602 (50%), Gaps = 9/602 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSK-----FSLSTVL 58
           A+RV    P  +  ++   L  +A +G   + + +    +DM ++          LS  L
Sbjct: 79  ARRVLDETPHPDAYTYKVALGWHAAAGRHAEAVAVH---RDMRRRCPAEQEDVVVLSLAL 135

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
           K    S     G+ +H   ++ G   D F+  +LVDMY+K G   NA KVF RI D +VV
Sbjct: 136 KAAVRSADFGYGRRLHCDVVKAGGG-DLFVMNNLVDMYAKGGDLKNARKVFDRIPDRNVV 194

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +W ++++   Q G  +E   +FN MR+ S+ P+++ + S++ A T  G    G  IH  +
Sbjct: 195 SWTSMLSGCLQNGLAKEGLVLFNEMRQESILPSEYTMASVLMACTMLGSLHQGRLIHGSV 254

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K+G  S+  +  A++ MY++ G      +VF+ ++  D V W  +   +    SP   L
Sbjct: 255 MKHGLVSNHFITAAMLDMYVKCGEAEDARQVFDELSFVDLVLWTTMIVGYTQNGSPLDAL 314

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            +F         PN  T   +L A + L ++  G+ +H  ++K     N VV  +LVDMY
Sbjct: 315 LLFVDDKFMRIVPNSVTIATVLSASAQLRNLSLGRSIHGISVKLGAVENDVVMNALVDMY 374

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K   L DA   F  + NKD+  + ++I  YA+      AL  F  MR++G   +  ++ 
Sbjct: 375 AKCKALSDAKGIFGRVLNKDVVTWNSLIAGYAENDMGSDALMLFSHMRVQGSLPDAISVV 434

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           + L+ C  +  L  G+  H+ AVK   + +++V+TAL+ +Y KC  +  A+ VF     R
Sbjct: 435 NALSACVCLGDLLIGKCFHTYAVKHAFMSNIYVNTALLNLYNKCADLPSAQRVFSEMNDR 494

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           +T +W  MIGGY   G    +++ F  ML +   P+E  F  +LS CSH G++  GKK F
Sbjct: 495 NTVTWGAMIGGYGMQGDSAGSIDLFNEMLKDNIQPNEAVFTSILSTCSHTGMVTVGKKCF 554

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            S+   + ITP++KH+ACM+D+L RAG   E   FI +  +  +  +W+  L  C  H  
Sbjct: 555 ESMAHYFNITPSMKHYACMVDVLARAGNLEEALEFIQKMPMQADTSIWQAFLHGCKLHSR 614

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           +E  E+   +++ L P      V  S++  + GRW+    +R L+  +G+ K P CS + 
Sbjct: 615 LEFAEEAVNRMMVLHPDTPDFCVMMSNLYTSYGRWDKSLAIRKLMKERGLVKLPGCSSVG 674

Query: 599 VD 600
           ++
Sbjct: 675 LE 676



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 147/309 (47%), Gaps = 5/309 (1%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E A++VF  +  +++V W  ++ GY ++G     + LF   K M    +  +++TVL   
Sbjct: 280 EDARQVFDELSFVDLVLWTTMIVGYTQNGSPLDALLLFVDDKFMRIVPNSVTIATVLSAS 339

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           A    +  G+ +H ++++LG   +  +  +LVDMY+KC    +A  +F R+ + DVV W 
Sbjct: 340 AQLRNLSLGRSIHGISVKLGAVENDVVMNALVDMYAKCKALSDAKGIFGRVLNKDVVTWN 399

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           ++I    +     +A  +F+ MR     P+   + + + A    GD   G+  H    K+
Sbjct: 400 SLIAGYAENDMGSDALMLFSHMRVQGSLPDAISVVNALSACVCLGDLLIGKCFHTYAVKH 459

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
            F S+  V  AL+++Y +   +    RVF  +  +++V+W A+   +         + +F
Sbjct: 460 AFMSNIYVNTALLNLYNKCADLPSAQRVFSEMNDRNTVTWGAMIGGYGMQGDSAGSIDLF 519

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLH---AHTIKHSLDGNHVVGTSLVDMY 298
            +ML    +PN   F  IL  CS    V  GK+     AH    +    H     +VD+ 
Sbjct: 520 NEMLKDNIQPNEAVFTSILSTCSHTGMVTVGKKCFESMAHYFNITPSMKHY--ACMVDVL 577

Query: 299 DKSGCLEDA 307
            ++G LE+A
Sbjct: 578 ARAGNLEEA 586



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 126/284 (44%), Gaps = 12/284 (4%)

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKD 318
           +L AC++L  +   + LHA  + H L       T L+  Y   G L  A    D   + D
Sbjct: 34  LLPACTTLPSL---RALHARLLAHGLLRGLRAHTKLLSCYAALGDLASARRVLDETPHPD 90

Query: 319 LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE--FTLASCLNGCSPVATLANGRLL 376
            + Y   +  +A AG    A+   R MR       E    L+  L      A    GR L
Sbjct: 91  AYTYKVALGWHAAAGRHAEAVAVHRDMRRRCPAEQEDVVVLSLALKAAVRSADFGYGRRL 150

Query: 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
           H   VK G   D+FV   LV MYAK G + +A  VF     R+  SW  M+ G +++GL 
Sbjct: 151 HCDVVKAGG-GDLFVMNNLVDMYAKGGDLKNARKVFDRIPDRNVVSWTSMLSGCLQNGLA 209

Query: 437 EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHF-- 494
           ++ L  F  M  E  +P E T   VL AC+ +G + +G+    S+ K +G+     HF  
Sbjct: 210 KEGLVLFNEMRQESILPSEYTMASVLMACTMLGSLHQGRLIHGSVMK-HGLVS--NHFIT 266

Query: 495 ACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           A M+D+  + G+  +      E     + ++W  ++   + +G+
Sbjct: 267 AAMLDMYVKCGEAEDARQVFDELSFV-DLVLWTTMIVGYTQNGS 309


>gi|449435958|ref|XP_004135761.1| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]
          Length = 1866

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 183/535 (34%), Positives = 293/535 (54%), Gaps = 3/535 (0%)

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD--PDVVAWGAIIT 125
           K    +H+  I        FL  +L+++Y+KCG  D  L +F    D   +VV+W ++IT
Sbjct: 44  KHATQIHSQLITTALLSLPFLFNNLLNLYAKCGSVDQTLLLFSSAPDDSKNVVSWTSLIT 103

Query: 126 CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
            L +     +A   FN MR S V PN +  ++++ A T+T     GE +H+++ K+GF +
Sbjct: 104 QLTRFKRPFKALTFFNHMRRSGVYPNHYTFSAVLSACTDTTASVHGEQMHSLVWKHGFLA 163

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           +  V +ALV MY +   +    +VFE +  ++ VSWN +   F   +  DQ +  F  +L
Sbjct: 164 EVFVVSALVDMYAKCCDMLMAEKVFEEMPVRNLVSWNTMIVGFLQNKLYDQAIFFFKTLL 223

Query: 246 LKGFKP-NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
           L+     +  +F  +  AC++  ++ FGKQ+H   +K  +     +  SL DMY K G  
Sbjct: 224 LENLTALDEVSFSSVFSACANAGNLEFGKQVHGVALKLGVWNLVYINNSLSDMYGKCGLF 283

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
            D    F +   +D+  +  +I +Y      E A   F  MR +G   +E + +S L+ C
Sbjct: 284 NDVAKLFSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSC 343

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
           + +A L  G L+H+  +++G + ++ V+++L+ MYAKCGS+ DA  +F+ +  R+   W 
Sbjct: 344 ANLAALYQGTLIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRNVVCWT 403

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
            +I    +HG     +E F  ML EG  PD ITFV VLSACSH G +EEG  +F+S+ K+
Sbjct: 404 AIIAACQQHGHANWVVELFEQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSMIKV 463

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEK 544
           +GI P  +H+AC++D+L RAG+    + FI    + P+A VW  LL AC  H N+ + ++
Sbjct: 464 HGIYPGHEHYACIVDLLSRAGELDRAKRFIELMPIKPDASVWGALLSACRNHSNLIMGKE 523

Query: 545 DAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            A KL +LEP    NYV   +I    G  N+   VR  + S G++KEP CSWI++
Sbjct: 524 VALKLFDLEPDNPGNYVLLCNILTRNGMLNEADEVRRKMESIGVRKEPGCSWIDI 578



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 117/477 (24%), Positives = 218/477 (45%), Gaps = 14/477 (2%)

Query: 7   VFKSMPE--LNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANS 64
           +F S P+   NVVSW +L+          K +  F  M+      + ++ S VL    ++
Sbjct: 84  LFSSAPDDSKNVVSWTSLITQLTRFKRPFKALTFFNHMRRSGVYPNHYTFSAVLSACTDT 143

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
                G+ +H++  + G   + F+  +LVDMY+KC     A KVF  +   ++V+W  +I
Sbjct: 144 TASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEMPVRNLVSWNTMI 203

Query: 125 TCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
               Q     +A   F  L+ E+    ++   +S+  A    G+   G+ +H V  K G 
Sbjct: 204 VGFLQNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAGNLEFGKQVHGVALKLGV 263

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            +   + N+L  MY + G  +  +++F     +D V+WN +   +    + +     F+ 
Sbjct: 264 WNLVYINNSLSDMYGKCGLFNDVAKLFSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWM 323

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  KG  P+  ++  +L +C++L+ +  G  +H   I+     N  V +SL+ MY K G 
Sbjct: 324 MRRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQIIRSGFVKNLRVASSLITMYAKCGS 383

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L DA   F+   ++++  +TAII +  Q G A   ++ F +M  EGIK +  T  S L+ 
Sbjct: 384 LVDAFQIFEETEDRNVVCWTAIIAACQQHGHANWVVELFEQMLREGIKPDYITFVSVLSA 443

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTA-LVAMYAKCGSIDDAEAVFKGSALRDTAS 422
           CS    +  G    +  +K   +       A +V + ++ G +D A+   +   ++  AS
Sbjct: 444 CSHTGRVEEGFFYFNSMIKVHGIYPGHEHYACIVDLLSRAGELDRAKRFIELMPIKPDAS 503

Query: 423 -WNMMIGGYVKHG---LG-EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
            W  ++     H    +G E AL+ F +  D     +   +V++ +  +  G++ E 
Sbjct: 504 VWGALLSACRNHSNLIMGKEVALKLFDLEPD-----NPGNYVLLCNILTRNGMLNEA 555



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 156/309 (50%), Gaps = 2/309 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMK-DMEKKFSKFSLSTVLK 59
           M +A++VF+ MP  N+VSWN ++ G+ ++    + +  F ++  +      + S S+V  
Sbjct: 181 MLMAEKVFEEMPVRNLVSWNTMIVGFLQNKLYDQAIFFFKTLLLENLTALDEVSFSSVFS 240

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             AN+G ++ G+ VH +A++LG     +++ SL DMY KCGL ++  K+F      DVV 
Sbjct: 241 ACANAGNLEFGKQVHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGARDVVT 300

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  +I         ++A   F +MR     P++   +S++ +         G  IH  I 
Sbjct: 301 WNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQII 360

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           + GF  +  V ++L++MY + G +    ++FE    ++ V W A+ +  Q +   +  + 
Sbjct: 361 RSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRNVVCWTAIIAACQQHGHANWVVE 420

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK-HSLDGNHVVGTSLVDMY 298
           +F QML +G KP+  TF+ +L ACS    V  G       IK H +   H     +VD+ 
Sbjct: 421 LFEQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSMIKVHGIYPGHEHYACIVDLL 480

Query: 299 DKSGCLEDA 307
            ++G L+ A
Sbjct: 481 SRAGELDRA 489


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 173/527 (32%), Positives = 285/527 (54%), Gaps = 8/527 (1%)

Query: 79  RLGCALDKFLSCSLVDMYSKCGL----ADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQ 134
           R G   D +L    ++M  +C       +    +F++IK P++  W  +I  L    C  
Sbjct: 39  RFGLCHDNYL----LNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFD 94

Query: 135 EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALV 194
           +A + + LMR     PN F    +++A     D + G  IH ++ K GF+ D  V  +LV
Sbjct: 95  DAIEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLV 154

Query: 195 SMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMC 254
            +Y + G +    +VF+ I  ++ VSW A+ S +       + + +F ++L     P+  
Sbjct: 155 CLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSF 214

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
           T + +L AC+ L D+  G+ +H   ++  +  N  VGTSLVDMY K G +E A   FD +
Sbjct: 215 TIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGM 274

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
             KD+ ++ A+I  YA  G  + A+  F +M+ E +K + +T+   L+ C+ +  L  G 
Sbjct: 275 PEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGE 334

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
            +  +  +   L +  + TAL+ +YAKCGS+  A  VFKG   +D   WN +I G   +G
Sbjct: 335 WVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNG 394

Query: 435 LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHF 494
             + +   F  +   G  PD  TF+ +L  C+H GL++EG+++F+S+ + + +TP+I+H+
Sbjct: 395 YVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHY 454

Query: 495 ACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEP 554
            CM+D+LGRAG   E    I    +  NA+VW  LLGAC  H + +L E   ++L+ELEP
Sbjct: 455 GCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEP 514

Query: 555 KMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
               NYV  S+I +   +W++ + VR  ++ + I+K P CSWIEVDG
Sbjct: 515 WNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDG 561



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 117/447 (26%), Positives = 210/447 (46%), Gaps = 2/447 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
            + +F  + + N+  WN ++ G   +      +  +  M+      + F+   VLK  A 
Sbjct: 65  TRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACAR 124

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ G  +H + ++ G   D F+  SLV +Y+KCG  ++A KVF  I D +VV+W AI
Sbjct: 125 LLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAI 184

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+     G  +EA  +F  + E ++ P+ F +  ++ A T+ GD   GE IH  I + G 
Sbjct: 185 ISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGM 244

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             +  VG +LV MY + G +     VF+ +  +D VSW A+   +     P + + +F Q
Sbjct: 245 VRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQ 304

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +  KP+  T + +L AC+ L  +  G+ +     ++    N V+GT+L+D+Y K G 
Sbjct: 305 MQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGS 364

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +  A   F  +  KD   + AII+  A  G  +++   F ++   GIK +  T    L G
Sbjct: 365 MSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCG 424

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTA-LVAMYAKCGSIDDAEAVFKGSALRDTA- 421
           C+    +  GR   +   +   L         +V +  + G +D+A  + +   +   A 
Sbjct: 425 CTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAI 484

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLD 448
            W  ++G    H   + A  A + +++
Sbjct: 485 VWGALLGACRIHRDTQLAELALKQLIE 511



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 180/364 (49%), Gaps = 7/364 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A +VF  +P+ NVVSW A+++GY   G  ++ + +F  + +M      F++  VL  
Sbjct: 163 LEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSA 222

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
               G + +G+ +H   + +G   + F+  SLVDMY+KCG  + A  VF  + + D+V+W
Sbjct: 223 CTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSW 282

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
           GA+I      G  +EA  +F  M+  +VKP+ + +  ++ A    G    GE +  ++ +
Sbjct: 283 GAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDR 342

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             F  + ++G AL+ +Y + G +S    VF+ +  +D V WNA+ S             +
Sbjct: 343 NEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGL 402

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK-HSLDGNHVVGTSLVDMYD 299
           F Q+   G KP+  TFI +L  C+    V  G++      +  SL  +      +VD+  
Sbjct: 403 FGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLG 462

Query: 300 KSGCLEDAGVAFDSLA-NKDLFAYTAIITS---YAQAGEAEMALKCFRKMRLEGIKSNEF 355
           ++G L++A     ++    +   + A++ +   +     AE+ALK  + + LE   S  +
Sbjct: 463 RAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALK--QLIELEPWNSGNY 520

Query: 356 TLAS 359
            L S
Sbjct: 521 VLLS 524


>gi|356498879|ref|XP_003518275.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 754

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 177/540 (32%), Positives = 290/540 (53%), Gaps = 11/540 (2%)

Query: 71  QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
           Q+VH   ++ GC  + F+   LV++Y+KCG  ++A +VF  +   +VVAW  ++    Q 
Sbjct: 84  QIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFENMPRRNVVAWTTLMVGFVQN 143

Query: 131 GCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVG 190
              + A  +F  M  +   P+ + L++++ A +     + G+  HA I KY  + DT VG
Sbjct: 144 SQPKHAIHVFQEMLYAGSYPSIYTLSAVLHACSSLQSLKLGDQFHAYIIKYHLDFDTSVG 203

Query: 191 NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFK 250
           +AL S+Y + GR+    + F  I  ++ +SW +  S   D  +P +GLR+F +M+ +  K
Sbjct: 204 SALCSLYSKCGRLEDALKAFSRIREKNVISWTSAVSACGDNGAPVKGLRLFVEMISEDIK 263

Query: 251 PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVA 310
           PN  T    L  C  +  +  G Q+ +  IK   + N  V  SL+ +Y KSG + +A   
Sbjct: 264 PNEFTLTSALSQCCEIPSLELGTQVCSLCIKFGYESNLRVRNSLLYLYLKSGFIVEAHRF 323

Query: 311 FDSLANKDLFAYTAIITSYAQAGE-----------AEMALKCFRKMRLEGIKSNEFTLAS 359
           F+ + +  +  + A+I  +AQ  E              ALK F K+   G+K + FTL+S
Sbjct: 324 FNRMDDVSMVTWNAMIAGHAQMMELTKDNLSACQRGSEALKIFSKLNQSGMKPDLFTLSS 383

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L+ CS +  +  G  +H+  +KTG L D+ VST+L++MY KCGSI+ A   F   + R 
Sbjct: 384 VLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYNKCGSIERASKAFLEMSTRT 443

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             +W  MI G+ +HG+ ++AL  F  M   G  P+ +TFV VLSACSH G++ +   +F 
Sbjct: 444 MIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNTVTFVGVLSACSHAGMVSQALNYFE 503

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
            ++K Y I P + H+ CM+D+  R G+  +  NFI +    P+  +W N +  C  HGN+
Sbjct: 504 IMQKKYKIKPVMDHYECMVDMFVRLGRLEQALNFIKKMNYEPSEFIWSNFIAGCRSHGNL 563

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           EL    +E+LL L+PK    YV   ++  +  R++D S VR ++  + + K    SWI +
Sbjct: 564 ELGFYASEQLLSLKPKDPETYVLLLNMYLSADRFDDVSRVRKMMEVEKVGKLKDWSWISI 623



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/478 (28%), Positives = 236/478 (49%), Gaps = 18/478 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A+RVF++MP  NVV+W  L+ G+ ++   +  +H+F  M       S ++LS VL  
Sbjct: 115 MEDARRVFENMPRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSIYTLSAVLHA 174

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ++   +K G   HA  I+     D  +  +L  +YSKCG  ++ALK F RI++ +V++W
Sbjct: 175 CSSLQSLKLGDQFHAYIIKYHLDFDTSVGSALCSLYSKCGRLEDALKAFSRIREKNVISW 234

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            + ++     G   +  ++F  M    +KPN+F LTS +    E      G  + ++  K
Sbjct: 235 TSAVSACGDNGAPVKGLRLFVEMISEDIKPNEFTLTSALSQCCEIPSLELGTQVCSLCIK 294

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS-----------RFQ 229
           +G+ES+  V N+L+ +Y+++G +    R F  +     V+WNA+ +              
Sbjct: 295 FGYESNLRVRNSLLYLYLKSGFIVEAHRFFNRMDDVSMVTWNAMIAGHAQMMELTKDNLS 354

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
             +   + L+IF ++   G KP++ T   +L  CS +  +  G+Q+HA TIK     + +
Sbjct: 355 ACQRGSEALKIFSKLNQSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVI 414

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           V TSL+ MY+K G +E A  AF  ++ + + A+T++IT ++Q G ++ AL  F  M L G
Sbjct: 415 VSTSLISMYNKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAG 474

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSI---AVKTGHLLDMFVSTALVAMYAKCGSID 406
           ++ N  T    L+ CS    ++       I     K   ++D +    +V M+ + G ++
Sbjct: 475 VRPNTVTFVGVLSACSHAGMVSQALNYFEIMQKKYKIKPVMDHY--ECMVDMFVRLGRLE 532

Query: 407 DAEAVFKGSALRDTA-SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
            A    K      +   W+  I G   HG  E    A   +L      D  T+V++L+
Sbjct: 533 QALNFIKKMNYEPSEFIWSNFIAGCRSHGNLELGFYASEQLLSLK-PKDPETYVLLLN 589


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 176/542 (32%), Positives = 278/542 (51%), Gaps = 31/542 (5%)

Query: 91  SLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFN-LMRESSVK 149
           +L+  YSK GL       F ++ D D V W  +I      G    A K +N +MR+ S  
Sbjct: 77  NLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSAN 136

Query: 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRV 209
             +  L ++++ ++  G    G+ IH  + K GFES  LVG+ L+ MY   G +S   +V
Sbjct: 137 LTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKV 196

Query: 210 FEAI------------------------------AHQDSVSWNALFSRFQDYESPDQGLR 239
           F  +                                +DSVSW A+           + + 
Sbjct: 197 FYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIE 256

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
            F +M ++G K +   F  +L AC  L  +  GKQ+HA  I+ +   +  VG++L+DMY 
Sbjct: 257 CFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYC 316

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K  CL  A   FD +  K++ ++TA++  Y Q G AE A+K F  M+  GI  + +TL  
Sbjct: 317 KCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQ 376

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            ++ C+ V++L  G   H  A+ +G +  + VS +LV +Y KCG IDD+  +F    +RD
Sbjct: 377 AISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRD 436

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SW  M+  Y + G   + ++ F  M+  G  PD +T   V+SACS  GL+E+G+++F 
Sbjct: 437 AVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFK 496

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
            +   YGI P+I H++CMID+  R+G+  E   FI      P+A+ W  LL AC   GN+
Sbjct: 497 LMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNL 556

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           E+ +  AE L+EL+P   + Y   S I A++G+W+  + +R  +  + +KKEP  SWI+ 
Sbjct: 557 EIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKW 616

Query: 600 DG 601
            G
Sbjct: 617 KG 618



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 128/501 (25%), Positives = 225/501 (44%), Gaps = 66/501 (13%)

Query: 7   VFKSMPELNVVSWNALLNGYAESG-DGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSG 65
            F+ +P+ + V+WN L+ GY+ SG  G  V      M+D     ++ +L T+LK  +++G
Sbjct: 94  TFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNG 153

Query: 66  YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD----------- 114
           ++  G+ +H   I+LG      +   L+ MY+  G   +A KVFY + D           
Sbjct: 154 HVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMG 213

Query: 115 -------------------PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVL 155
                               D V+W A+I  L Q G  +EA + F  M+   +K +Q+  
Sbjct: 214 GLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPF 273

Query: 156 TSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH 215
            S++ A    G    G+ IHA I +  F+    VG+AL+ MY +   + Y   VF+ +  
Sbjct: 274 GSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQ 333

Query: 216 QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL 275
           ++ VSW A+   +      ++ ++IF  M   G  P+  T    + AC+++S +  G Q 
Sbjct: 334 KNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQF 393

Query: 276 HAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEA 335
           H   I   L     V  SLV +Y K G ++D+   F+ +  +D  ++TA++++YAQ G A
Sbjct: 394 HGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRA 453

Query: 336 EMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTA 394
              ++ F KM   G+K +  TL   ++ CS    +  G R    +  + G +  +   + 
Sbjct: 454 VETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSC 513

Query: 395 LVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD 454
           ++ ++++ G ++                                  EA R +    + PD
Sbjct: 514 MIDLFSRSGRLE----------------------------------EAMRFINGMPFPPD 539

Query: 455 EITFVVVLSACSHMGLIEEGK 475
            I +  +LSAC + G +E GK
Sbjct: 540 AIGWTTLLSACRNKGNLEIGK 560



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 109/228 (47%), Gaps = 2/228 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  AK VF  M + NVVSW A++ GY ++G  ++ + +F  M+        ++L   +  
Sbjct: 321 LHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISA 380

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            AN   ++ G   H  AI  G      +S SLV +Y KCG  D++ ++F  +   D V+W
Sbjct: 381 CANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSW 440

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC- 179
            A+++   Q G   E  ++F+ M +  +KP+   LT ++ A +  G    G+    ++  
Sbjct: 441 TAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTS 500

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH-QDSVSWNALFS 226
           +YG        + ++ ++  +GR+    R    +    D++ W  L S
Sbjct: 501 EYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLS 548



 Score = 45.8 bits (107), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 1/98 (1%)

Query: 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR-MM 446
           ++F    L+  Y+K G I + E+ F+    RD  +WN++I GY   GL   A++A+  MM
Sbjct: 71  NLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMM 130

Query: 447 LDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
            D       +T + +L   S  G +  GK+    + K+
Sbjct: 131 RDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKL 168


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 185/598 (30%), Positives = 309/598 (51%), Gaps = 4/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A  +F  MPE N VS+  L  GYA     Q  + L+  +     + +    ++ LK F +
Sbjct: 103 ALNLFDEMPERNNVSFVTLAQGYA----CQDPIGLYSRLHREGHELNPHVFTSFLKLFVS 158

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
               +    +H+  ++LG   + F+  +L++ YS CG  D+A  VF  I   D+V W  I
Sbjct: 159 LDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGI 218

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           ++C  + G  +++ K+ + MR +   PN +   + ++A+   G     + +H  I K  +
Sbjct: 219 VSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCY 278

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D  VG  L+ +Y + G +S   +VF  +   D V W+ + +RF      ++ + +F +
Sbjct: 279 VLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIR 338

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M      PN  T   IL  C+     G G+QLH   +K   D +  V  +L+D+Y K   
Sbjct: 339 MREAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEK 398

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++ A   F  L++K+  ++  +I  Y   GE   A   FR+     +   E T +S L  
Sbjct: 399 MDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGA 458

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +A++  G  +H +A+KT +   + VS +L+ MYAKCG I  A++VF      D ASW
Sbjct: 459 CASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASW 518

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I GY  HGLG +AL    +M D    P+ +TF+ VLS CS+ GLI++G++ F S+ +
Sbjct: 519 NALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIR 578

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            +GI P ++H+ CM+ +LGR+G+  +    I      P+ ++W  +L A     N E   
Sbjct: 579 DHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFAR 638

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           + AE++L++ PK E+ YV  S++ A   +W + + +R  +   G+KKEP  SWIE  G
Sbjct: 639 RSAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSWIEHQG 696



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 138/473 (29%), Positives = 221/473 (46%), Gaps = 14/473 (2%)

Query: 69  AGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLD 128
           + + +H   ++ G  LD F +  L++ Y K G   +AL +F  + + + V++      L 
Sbjct: 67  SAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSF----VTLA 122

Query: 129 QQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTL 188
           Q   CQ+   +++ +     + N  V TS ++             +H+ I K G++S+  
Sbjct: 123 QGYACQDPIGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAF 182

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG 248
           VG AL++ Y   G V     VFE I  +D V W  + S + +    +  L++   M + G
Sbjct: 183 VGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAG 242

Query: 249 FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
           F PN  TF   LKA   L    F K +H   +K     +  VG  L+ +Y + G + DA 
Sbjct: 243 FMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAF 302

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
             F+ +   D+  ++ +I  + Q G    A+  F +MR   +  NEFTL+S LNGC+   
Sbjct: 303 KVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGK 362

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
               G  LH + VK G  LD++VS AL+ +YAKC  +D A  +F   + ++  SWN +I 
Sbjct: 363 CSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIV 422

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG-KKHFSSIKKIYGI 487
           GY   G G KA   FR  L       E+TF   L AC+ +  ++ G + H  +IK     
Sbjct: 423 GYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIK----- 477

Query: 488 TPTIKHFAC---MIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           T   K  A    +ID+  + G     ++   E + T +   W  L+   S HG
Sbjct: 478 TNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEME-TIDVASWNALISGYSTHG 529


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 210/637 (32%), Positives = 316/637 (49%), Gaps = 54/637 (8%)

Query: 15  NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVH 74
           +V  WN L+      G  + V  L+  MK +      ++   V K  AN   +  G  +H
Sbjct: 223 SVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLH 282

Query: 75  AMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD---PDVVAWGAIITCLDQQG 131
           A   R G A + F+  ++V MY KCG   +A  +F  +      D+V+W ++++      
Sbjct: 283 ATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWAS 342

Query: 132 CCQEAAKIFNLMRESSV-KPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVG 190
               A  +F+ M    +  P+   L +++ A         G  +H    + G   D  VG
Sbjct: 343 DANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVG 402

Query: 191 NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNA----------------LFSRFQD---- 230
           NA+V MY + G++   ++VF+ +  +D VSWNA                LF R  +    
Sbjct: 403 NAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIE 462

Query: 231 ------------YESPDQG---LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL 275
                       Y    QG   L +F QM   G +PN+ T + +L AC S+  +  GK+ 
Sbjct: 463 LDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKET 522

Query: 276 HAHTIKH--SLDG------NHVVGTSLVDMYDKSGCLEDAGVAFDSLA--NKDLFAYTAI 325
           H + IK   +LDG      +  V   L+DMY K    E A   FDS++  ++D+  +T +
Sbjct: 523 HCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVM 582

Query: 326 ITSYAQAGEAEMALKCFRKM--RLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKT 383
           I  YAQ G+A  AL+ F  M    + IK N+FTL+  L  C+ +A L  GR +H+  ++ 
Sbjct: 583 IGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRN 642

Query: 384 --GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALE 441
             G ++ +FV+  L+ MY+K G +D A+ VF     R+  SW  ++ GY  HG GE AL 
Sbjct: 643 FYGSVM-LFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALR 701

Query: 442 AFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDIL 501
            F  M     VPD ITF+VVL ACSH G+++ G   F+ + K +G+ P  +H+ACM+D+ 
Sbjct: 702 VFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLW 761

Query: 502 GRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYV 561
           GRAG+  E    I E  + P  +VW  LL AC  H N+EL E  A +LLELE   + +Y 
Sbjct: 762 GRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELGEFAANRLLELESGNDGSYT 821

Query: 562 FPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
             S+I A   RW D + +R  +   GIKK P CSWI+
Sbjct: 822 LLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQ 858



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 140/527 (26%), Positives = 239/527 (45%), Gaps = 62/527 (11%)

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP--DVVAWGAIITCL 127
            +++H  +I  G      L+ +L+  Y        A+ +  R+      V  W  +I   
Sbjct: 177 AKLLHQQSIMQGLLFH--LATNLIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRA 234

Query: 128 DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDT 187
              G  ++   ++  M+     P+ +    + +A         G S+HA + + GF S+ 
Sbjct: 235 LHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNV 294

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAH---QDSVSWNALFSRFQDYESPDQGLRIFYQM 244
            V NA+VSMY + G + +   +F+ + H   QD VSWN++ S +      +  L +F++M
Sbjct: 295 FVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKM 354

Query: 245 LLKGF-KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
             +    P++ + + IL AC+SL+    G+Q+H  +I+  L  +  VG ++VDMY K G 
Sbjct: 355 TTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGK 414

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI------------- 350
           +E+A   F  +  KD+ ++ A++T Y+QAG  E AL  F +M  E I             
Sbjct: 415 MEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITG 474

Query: 351 ----------------------KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL- 387
                                 + N  TL S L+ C  V  L +G+  H  A+K    L 
Sbjct: 475 YAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLD 534

Query: 388 -------DMFVSTALVAMYAKCGSIDDAEAVFKGSAL--RDTASWNMMIGGYVKHGLGEK 438
                  D+ V   L+ MYAKC S + A  +F   +   RD  +W +MIGGY +HG    
Sbjct: 535 GPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANN 594

Query: 439 ALEAFRMM--LDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFA 495
           AL+ F  M  +D+   P++ T    L AC+ +  +  G++ H   ++  YG   ++  F 
Sbjct: 595 ALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYG---SVMLFV 651

Query: 496 --CMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
             C+ID+  ++G   +    + +     NA+ W +L+     HG  E
Sbjct: 652 ANCLIDMYSKSGD-VDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGE 697



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 121/425 (28%), Positives = 197/425 (46%), Gaps = 56/425 (13%)

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDS--VSWNALFSRFQDYESPDQGLRIFYQMLLKGFK 250
           L+  Y+ +   +Y   + E +    S    WN L  R     SP     ++ QM   G+ 
Sbjct: 197 LIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWT 256

Query: 251 PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVA 310
           P+  TF  + KAC++LS +  G  LHA   +     N  V  ++V MY K G L  A   
Sbjct: 257 PDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNM 316

Query: 311 FDSLANK---DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE-FTLASCLNGCSP 366
           FD L ++   DL ++ +++++Y  A +A  AL  F KM    + S +  +L + L  C+ 
Sbjct: 317 FDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACAS 376

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           +A    GR +H  ++++G + D+FV  A+V MYAKCG +++A  VF+    +D  SWN M
Sbjct: 377 LAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAM 436

Query: 427 -----------------------------------IGGYVKHGLGEKALEAFRMMLDEGY 451
                                              I GY + G G +AL+ FR M D G 
Sbjct: 437 VTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGS 496

Query: 452 VPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIY---GITP---TIKHFACMIDILGRA 504
            P+ +T V +LSAC  +G +  GK+ H  +IK I    G  P    +K    +ID+  + 
Sbjct: 497 RPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKC 556

Query: 505 GKFTEIEN--FITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVF 562
            + TE+    F + +    + + W  ++G  + HG    D  +A +L     KM+ + + 
Sbjct: 557 -QSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHG----DANNALQLFSGMFKMDKS-IK 610

Query: 563 PSDIS 567
           P+D +
Sbjct: 611 PNDFT 615



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 159/322 (49%), Gaps = 16/322 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + L +R+ +   EL+VV+W A++ GYA+ G G + + +F  M D   + +  +L ++L  
Sbjct: 450 LSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSA 509

Query: 61  FANSGYIKAGQVVHAMAIRLGCALD---------KFLSCSLVDMYSKCGLADNALKVFYR 111
             + G +  G+  H  AI+    LD         K ++  L+DMY+KC   + A K+F  
Sbjct: 510 CVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVIN-GLIDMYAKCQSTEVARKMFDS 568

Query: 112 I--KDPDVVAWGAIITCLDQQGCCQEAAKIFNLM--RESSVKPNQFVLTSLVRATTETGD 167
           +  KD DVV W  +I    Q G    A ++F+ M   + S+KPN F L+  + A      
Sbjct: 569 VSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAA 628

Query: 168 QRCGESIHAVICKYGFESDTL-VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS 226
            R G  +HA + +  + S  L V N L+ MY ++G V     VF+ +  +++VSW +L +
Sbjct: 629 LRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMT 688

Query: 227 RFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKH-SLD 285
            +  +   +  LR+F +M      P+  TF+V+L ACS    V  G        K   +D
Sbjct: 689 GYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVD 748

Query: 286 GNHVVGTSLVDMYDKSGCLEDA 307
                   +VD++ ++G L +A
Sbjct: 749 PGPEHYACMVDLWGRAGRLGEA 770



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 97/243 (39%), Gaps = 27/243 (11%)

Query: 337 MALKCFR-KMRLEGIKSNEFTLASC----LNGCSPVATLANGRLLHSIAVKTGHLLDMFV 391
           M L+CF  K +L   +     L SC    +       +LA+ +LLH  ++  G L  +  
Sbjct: 136 MLLRCFPIKSKLLQSQFTNTRLLSCATIPITALKECNSLAHAKLLHQQSIMQGLLFHL-- 193

Query: 392 STALVAMYAKCGSIDDAEAVFKGSALRDTAS----WNMMIGGYVKHGLGEKALEAFRMML 447
           +T L+  Y    S   A A+     L  + S    WN +I   +  G        +R M 
Sbjct: 194 ATNLIGTYIASNST--AYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMK 251

Query: 448 DEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFAC--MIDILGRAG 505
             G+ PD  TF  V  AC+++  +  G    +++ +  G    +  F C  ++ + G+ G
Sbjct: 252 SLGWTPDHYTFPFVFKACANLSSLSLGASLHATVSR-SGFASNV--FVCNAVVSMYGKCG 308

Query: 506 KFTEIENFITET--KLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFP 563
                 N   +   +   + + W +++ A  W         DA   L L  KM + ++  
Sbjct: 309 ALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMW-------ASDANTALALFHKMTTRHLMS 361

Query: 564 SDI 566
            D+
Sbjct: 362 PDV 364


>gi|242062166|ref|XP_002452372.1| hypothetical protein SORBIDRAFT_04g024590 [Sorghum bicolor]
 gi|241932203|gb|EES05348.1| hypothetical protein SORBIDRAFT_04g024590 [Sorghum bicolor]
          Length = 691

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 192/532 (36%), Positives = 290/532 (54%), Gaps = 3/532 (0%)

Query: 4   AKRVF-KSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           AKR+F +   E N VSWN +++ Y ++   +  + +F  M    ++ ++F  S V+    
Sbjct: 154 AKRIFDEPGGERNAVSWNGMISAYVKNDRCRDAVGVFREMVWSGERPNEFGFSCVVNACT 213

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
            S   + G+ VH M +R G   D F + +LVDMYSK G  + A  VF +I   DVV+W A
Sbjct: 214 GSRDWETGRQVHGMVVRTGYDKDVFTANALVDMYSKLGDIEMAAVVFEKIPAADVVSWNA 273

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I      G    A ++   M+   V PN F L+S+++A    G    G  IH  + K  
Sbjct: 274 LIAGCVTHGHDHRALELLLQMKPLGVVPNVFTLSSVLKACAGAGAFNLGRQIHGFMIKAD 333

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            +SD  V   LV MY ++G +    +VF+ +  +D + WNAL S         + L +F+
Sbjct: 334 ADSDEFVAVGLVDMYAKDGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFH 393

Query: 243 QMLLKGFK--PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           +M  +G     N  T   +LK+ +SL  +   KQ+HA   K  L  +  V   L+D Y K
Sbjct: 394 RMRKEGLDLDVNRTTLAAVLKSTASLEAICHTKQVHALAEKIGLLSDSHVVNGLIDSYWK 453

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L+ A   F+   + D+ + T+++T+ +Q    E A+K F +M  +G++ + F L+S 
Sbjct: 454 CGRLDYAIKVFEESCSDDIISSTSMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSL 513

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           LN C+ ++    G+ +H+  +K     D+F   ALV  YAKCGSI+DA+  F G   +  
Sbjct: 514 LNACASLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYTYAKCGSIEDADMAFSGLPEKGV 573

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SW+ MIGG  +HG G++ALE F  MLDEG  P+ IT   VLSAC+H GL+++ KK+F S
Sbjct: 574 VSWSAMIGGLAQHGHGKRALELFHRMLDEGVAPNNITLTSVLSACNHAGLVDDAKKYFES 633

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
           +K+ +GI  T +H+ACMIDILGRAGK  +    +       NA VW  LLGA
Sbjct: 634 MKEAFGIDRTEEHYACMIDILGRAGKLKDAMELVNNMPFQANAAVWGALLGA 685



 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 169/571 (29%), Positives = 281/571 (49%), Gaps = 19/571 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF  +P+   VSW++L+  Y+ +G  +  +  F SM+      ++++L  VLK   +
Sbjct: 56  ARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALWAFRSMRGRGVPCNEYALPIVLKCAPD 115

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI-KDPDVVAWGA 122
              ++ G  VHA+A+      D F++ +LV MY   G+ D A ++F     + + V+W  
Sbjct: 116 ---VRFGAQVHALAVATRLIQDVFVTNALVAMYGGFGMVDEAKRIFDEPGGERNAVSWNG 172

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I+   +   C++A  +F  M  S  +PN+F  + +V A T + D   G  +H ++ + G
Sbjct: 173 MISAYVKNDRCRDAVGVFREMVWSGERPNEFGFSCVVNACTGSRDWETGRQVHGMVVRTG 232

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           ++ D    NALV MY + G +   + VFE I   D VSWNAL +    +    + L +  
Sbjct: 233 YDKDVFTANALVDMYSKLGDIEMAAVVFEKIPAADVVSWNALIAGCVTHGHDHRALELLL 292

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           QM   G  PN+ T   +LKAC+       G+Q+H   IK   D +  V   LVDMY K G
Sbjct: 293 QMKPLGVVPNVFTLSSVLKACAGAGAFNLGRQIHGFMIKADADSDEFVAVGLVDMYAKDG 352

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG--IKSNEFTLASC 360
            L+DA   FD +  +DL  + A+I+  +  G     L  F +MR EG  +  N  TLA+ 
Sbjct: 353 FLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLAAV 412

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L   + +  + + + +H++A K G L D  V   L+  Y KCG +D A  VF+ S   D 
Sbjct: 413 LKSTASLEAICHTKQVHALAEKIGLLSDSHVVNGLIDSYWKCGRLDYAIKVFEESCSDDI 472

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFS 479
            S   M+    +   GE A++ F  ML +G  PD      +L+AC+ +   E+GK+ H  
Sbjct: 473 ISSTSMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACASLSAYEQGKQVHAH 532

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV-WENLLGACSWHGN 538
            IK+ +  T  +     ++    + G   + +  +  + L    +V W  ++G  + HG+
Sbjct: 533 LIKRQF--TSDVFAGNALVYTYAKCGSIEDAD--MAFSGLPEKGVVSWSAMIGGLAQHGH 588

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISAT 569
                   ++ LEL  +M    V P++I+ T
Sbjct: 589 -------GKRALELFHRMLDEGVAPNNITLT 612



 Score =  215 bits (547), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 123/367 (33%), Positives = 196/367 (53%), Gaps = 2/367 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E+A  VF+ +P  +VVSWNAL+ G    G   + + L   MK +    + F+LS+VLK 
Sbjct: 253 IEMAAVVFEKIPAADVVSWNALIAGCVTHGHDHRALELLLQMKPLGVVPNVFTLSSVLKA 312

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A +G    G+ +H   I+     D+F++  LVDMY+K G  D+A KVF  +   D++ W
Sbjct: 313 CAGAGAFNLGRQIHGFMIKADADSDEFVAVGLVDMYAKDGFLDDARKVFDFMPRRDLILW 372

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRES--SVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            A+I+     G   E   +F+ MR+    +  N+  L +++++T         + +HA+ 
Sbjct: 373 NALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLAAVLKSTASLEAICHTKQVHALA 432

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K G  SD+ V N L+  Y + GR+ Y  +VFE     D +S  ++ +     +  +  +
Sbjct: 433 EKIGLLSDSHVVNGLIDSYWKCGRLDYAIKVFEESCSDDIISSTSMMTALSQCDHGEDAI 492

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           ++F QML KG +P+      +L AC+SLS    GKQ+HAH IK     +   G +LV  Y
Sbjct: 493 KLFVQMLRKGLEPDSFVLSSLLNACASLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYTY 552

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G +EDA +AF  L  K + +++A+I   AQ G  + AL+ F +M  EG+  N  TL 
Sbjct: 553 AKCGSIEDADMAFSGLPEKGVVSWSAMIGGLAQHGHGKRALELFHRMLDEGVAPNNITLT 612

Query: 359 SCLNGCS 365
           S L+ C+
Sbjct: 613 SVLSACN 619



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 132/435 (30%), Positives = 202/435 (46%), Gaps = 8/435 (1%)

Query: 53  SLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI 112
           ++ + L  F  S  + AG  +H+  ++ G  L    S  L+  YS+C L   A  VF  I
Sbjct: 6   TIGSALARFGASRSLLAGAHLHSHLLKSG--LLASYSNHLLSFYSRCRLPSAARAVFDEI 63

Query: 113 KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172
            DP  V+W +++T     G  ++A   F  MR   V  N++ L  +++      D R G 
Sbjct: 64  PDPCHVSWSSLVTAYSNNGMPRDALWAFRSMRGRGVPCNEYALPIVLKCAP---DVRFGA 120

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF-EAIAHQDSVSWNALFSRFQDY 231
            +HA+        D  V NALV+MY   G V    R+F E    +++VSWN + S +   
Sbjct: 121 QVHALAVATRLIQDVFVTNALVAMYGGFGMVDEAKRIFDEPGGERNAVSWNGMISAYVKN 180

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
           +     + +F +M+  G +PN   F  ++ AC+   D   G+Q+H   ++   D +    
Sbjct: 181 DRCRDAVGVFREMVWSGERPNEFGFSCVVNACTGSRDWETGRQVHGMVVRTGYDKDVFTA 240

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
            +LVDMY K G +E A V F+ +   D+ ++ A+I      G    AL+   +M+  G+ 
Sbjct: 241 NALVDMYSKLGDIEMAAVVFEKIPAADVVSWNALIAGCVTHGHDHRALELLLQMKPLGVV 300

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            N FTL+S L  C+       GR +H   +K     D FV+  LV MYAK G +DDA  V
Sbjct: 301 PNVFTLSSVLKACAGAGAFNLGRQIHGFMIKADADSDEFVAVGLVDMYAKDGFLDDARKV 360

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD--EITFVVVLSACSHMG 469
           F     RD   WN +I G    G   + L  F  M  EG   D    T   VL + + + 
Sbjct: 361 FDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLAAVLKSTASLE 420

Query: 470 LIEEGKKHFSSIKKI 484
            I   K+  +  +KI
Sbjct: 421 AICHTKQVHALAEKI 435


>gi|302816964|ref|XP_002990159.1| hypothetical protein SELMODRAFT_131170 [Selaginella moellendorffii]
 gi|300142014|gb|EFJ08719.1| hypothetical protein SELMODRAFT_131170 [Selaginella moellendorffii]
          Length = 849

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 186/602 (30%), Positives = 317/602 (52%), Gaps = 5/602 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF S+   NV SW  LL  YA++G  + V+ L   M  +    +  +L+TV+   + 
Sbjct: 135 ARLVFSSIRHPNVYSWTILLAAYAQNGHHKTVLELLRQMDLLGVWPNAVTLATVIGAVSE 194

Query: 64  SGYIKAGQVVHAMAIRLGCAL--DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
            G     + +HA A    C L  D  L  +L+DMY+KCG   +A  VF + ++ D+    
Sbjct: 195 LGNWDEARKIHARAAAT-CQLTYDVVLVTALIDMYAKCGDIFHAEVVFDQARNKDLACCN 253

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           A+I+   Q G   +A   FN ++ S ++PNQ     L RA    G        H      
Sbjct: 254 AMISAYIQLGYTVDAVSTFNRIQPSGLQPNQVTYALLFRACATNGVYSDARVAHMCFILS 313

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
               D +V  ALVSMY   G +    RVF+ +  ++ V+WN + + +      D+ L+++
Sbjct: 314 KLRPDVVVNTALVSMYSRCGSLEDARRVFDRMPGKNVVTWNVMIAGYAQEGYTDEALQLY 373

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
             M   G +P+  TF+ +L++CS    +  G+ +H H +    D +  V ++L+ MY   
Sbjct: 374 VSMEAAGVEPDEITFVNVLESCSLAEHLAAGRDIHKHVVDAGYDSSLTVLSALITMYSAC 433

Query: 302 GCLEDAGVAFDS--LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           G L DA   F      +  + ++TA++T+  + GE   AL  FRKM LEG+++N  T  S
Sbjct: 434 GSLGDAVDVFHKGVTTHSSVISWTAMLTALTRNGEGRSALALFRKMDLEGVRANVVTFVS 493

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            ++ CS +  L  G  +    + TGHL+D+ + T+L+ +Y KCG +D A  VF   + ++
Sbjct: 494 TIDACSSIGALVEGHAIFERVIVTGHLIDVVLGTSLINLYGKCGRLDYALEVFHYLSFKN 553

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             +WN ++    ++G    + E  + M  +G  P+E+T + +L  CSH GL+ +   +F 
Sbjct: 554 IVTWNTILAASSQNGEETLSDELLQEMDLDGAQPNEMTLLNMLFGCSHNGLVAKAVSYFR 613

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           S+   + + PT +H+ C++D+LGR+G+  E+E FI+    + ++++W +LLG+C  H ++
Sbjct: 614 SMVYGHCLVPTSEHYGCLVDLLGRSGQLEEVEAFISSKPFSLDSVLWMSLLGSCVIHSDV 673

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           E   + A ++L L+PK  S YV  S++ A  G  +    +  L   + +KKE S S+IEV
Sbjct: 674 ERGLRAARRVLGLDPKNASPYVLLSNMFAAIGMLDAVKSLAKLAGERAMKKEQSRSYIEV 733

Query: 600 DG 601
           +G
Sbjct: 734 NG 735



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 134/468 (28%), Positives = 224/468 (47%), Gaps = 15/468 (3%)

Query: 85  DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMR 144
           D+ L   +V+ Y KCG   +A  VF  I+ P+V +W  ++    Q G  +   ++   M 
Sbjct: 115 DRLLLNCVVEAYGKCGCVKDARLVFSSIRHPNVYSWTILLAAYAQNGHHKTVLELLRQMD 174

Query: 145 ESSVKPNQFVLTSLVRATTETGDQRCGESIH---AVICKYGFESDTLVGNALVSMYMENG 201
              V PN   L +++ A +E G+      IH   A  C+  +  D ++  AL+ MY + G
Sbjct: 175 LLGVWPNAVTLATVIGAVSELGNWDEARKIHARAAATCQLTY--DVVLVTALIDMYAKCG 232

Query: 202 RVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILK 261
            + +   VF+   ++D    NA+ S +         +  F ++   G +PN  T+ ++ +
Sbjct: 233 DIFHAEVVFDQARNKDLACCNAMISAYIQLGYTVDAVSTFNRIQPSGLQPNQVTYALLFR 292

Query: 262 ACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFA 321
           AC++       +  H   I   L  + VV T+LV MY + G LEDA   FD +  K++  
Sbjct: 293 ACATNGVYSDARVAHMCFILSKLRPDVVVNTALVSMYSRCGSLEDARRVFDRMPGKNVVT 352

Query: 322 YTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAV 381
           +  +I  YAQ G  + AL+ +  M   G++ +E T  + L  CS    LA GR +H   V
Sbjct: 353 WNVMIAGYAQEGYTDEALQLYVSMEAAGVEPDEITFVNVLESCSLAEHLAAGRDIHKHVV 412

Query: 382 KTGHLLDMFVSTALVAMYAKCGSIDDAEAVF-KGSALRDTA-SWNMMIGGYVKHGLGEKA 439
             G+   + V +AL+ MY+ CGS+ DA  VF KG     +  SW  M+    ++G G  A
Sbjct: 413 DAGYDSSLTVLSALITMYSACGSLGDAVDVFHKGVTTHSSVISWTAMLTALTRNGEGRSA 472

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMID 499
           L  FR M  EG   + +TFV  + ACS +G + EG   F  +  + G    +     +I+
Sbjct: 473 LALFRKMDLEGVRANVVTFVSTIDACSSIGALVEGHAIFERV-IVTGHLIDVVLGTSLIN 531

Query: 500 ILGRAGKFT---EIENFITETKLTPNALVWENLLGACSWHGNIELDEK 544
           + G+ G+     E+ ++++      N + W  +L A S +G   L ++
Sbjct: 532 LYGKCGRLDYALEVFHYLS----FKNIVTWNTILAASSQNGEETLSDE 575



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 179/394 (45%), Gaps = 24/394 (6%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+RVF  MP  NVV+WN ++ GYA+ G   + + L+ SM+    +  + +   VL+ 
Sbjct: 335 LEDARRVFDRMPGKNVVTWNVMIAGYAQEGYTDEALQLYVSMEAAGVEPDEITFVNVLES 394

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYR--IKDPDVV 118
            + + ++ AG+ +H   +  G      +  +L+ MYS CG   +A+ VF++       V+
Sbjct: 395 CSLAEHLAAGRDIHKHVVDAGYDSSLTVLSALITMYSACGSLGDAVDVFHKGVTTHSSVI 454

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +W A++T L + G  + A  +F  M    V+ N     S + A +  G    G +I   +
Sbjct: 455 SWTAMLTALTRNGEGRSALALFRKMDLEGVRANVVTFVSTIDACSSIGALVEGHAIFERV 514

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
              G   D ++G +L+++Y + GR+ Y   VF  ++ ++ V+WN + +            
Sbjct: 515 IVTGHLIDVVLGTSLINLYGKCGRLDYALEVFHYLSFKNIVTWNTILAASSQNGEETLSD 574

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS----- 293
            +  +M L G +PN  T + +L  CS    V           +  + G+ +V TS     
Sbjct: 575 ELLQEMDLDGAQPNEMTLLNMLFGCSHNGLVAKAVSY----FRSMVYGHCLVPTSEHYGC 630

Query: 294 LVDMYDKSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK- 351
           LVD+  +SG LE+      S   + D   + +++ S     + E  L+  R  R+ G+  
Sbjct: 631 LVDLLGRSGQLEEVEAFISSKPFSLDSVLWMSLLGSCVIHSDVERGLRAAR--RVLGLDP 688

Query: 352 ---------SNEFTLASCLNGCSPVATLANGRLL 376
                    SN F     L+    +A LA  R +
Sbjct: 689 KNASPYVLLSNMFAAIGMLDAVKSLAKLAGERAM 722



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 149/304 (49%), Gaps = 15/304 (4%)

Query: 268 DVGFGKQLHAHTIKHS--LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
           DV   K + AH I HS    G+ ++   +V+ Y K GC++DA + F S+ + +++++T +
Sbjct: 95  DVTALKTIQAH-ISHSKRFAGDRLLLNCVVEAYGKCGCVKDARLVFSSIRHPNVYSWTIL 153

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH 385
           + +YAQ G  +  L+  R+M L G+  N  TLA+ +   S +      R +H+ A  T  
Sbjct: 154 LAAYAQNGHHKTVLELLRQMDLLGVWPNAVTLATVIGAVSELGNWDEARKIHARAAATCQ 213

Query: 386 L-LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
           L  D+ + TAL+ MYAKCG I  AE VF  +  +D A  N MI  Y++ G    A+  F 
Sbjct: 214 LTYDVVLVTALIDMYAKCGDIFHAEVVFDQARNKDLACCNAMISAYIQLGYTVDAVSTFN 273

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGK-KHFSSIKKIYGITPTIKHFACMIDILGR 503
            +   G  P+++T+ ++  AC+  G+  + +  H   I  +  + P +     ++ +  R
Sbjct: 274 RIQPSGLQPNQVTYALLFRACATNGVYSDARVAHMCFI--LSKLRPDVVVNTALVSMYSR 331

Query: 504 AGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFP 563
            G   +    + +     N + W  ++   +  G         ++ L+L   ME+  V P
Sbjct: 332 CGSLEDARR-VFDRMPGKNVVTWNVMIAGYAQEGY-------TDEALQLYVSMEAAGVEP 383

Query: 564 SDIS 567
            +I+
Sbjct: 384 DEIT 387


>gi|357474955|ref|XP_003607763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508818|gb|AES89960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 871

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 186/525 (35%), Positives = 273/525 (52%), Gaps = 8/525 (1%)

Query: 83  ALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNL 142
           A D F+  SLVD YSKCG   +A KVF  I D  VV+W ++I    Q  C +E   +FN 
Sbjct: 166 AADSFVLTSLVDAYSKCGKLRDARKVFDEIPDRSVVSWTSMIVAYVQNECAEEGLMLFNR 225

Query: 143 MRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGR 202
           MRE  +  N F + SLV A T+ G    G+ +H  + K G E ++ +  +L++MY++ G 
Sbjct: 226 MREGFLDGNVFTVGSLVTACTKLGCLHQGKWVHGYVIKNGIEINSYLATSLLNMYVKCGD 285

Query: 203 VSYGSRVFEAIA------HQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTF 256
           +     VF+  +        D V W A+   +     P   L +F         PN  T 
Sbjct: 286 IGDARSVFDEFSVSTCGGGDDLVFWTAMIVGYTQRGYPQAALELFTDKKWYRILPNSVTL 345

Query: 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
             +L AC+ L ++  GK LH   +K+ LD   +   SLVDMY K G + DA   F +  +
Sbjct: 346 ASLLSACAQLENIVMGKLLHVLVVKYGLDDTSL-RNSLVDMYAKCGLIPDAHYVFATTVD 404

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL 376
           KD+ ++ ++I+ YAQ+G A  AL  F +MR+E    +  T+   L+ C+ V     G  L
Sbjct: 405 KDVVSWNSVISGYAQSGSAYEALDLFNRMRMESFLPDAVTVVGVLSACASVGAHQIGLSL 464

Query: 377 HSIAVKTGHLLD-MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           H  A+K G +   ++V TAL+  YAKCG    A  VF G   ++  +W  MIGG    G 
Sbjct: 465 HGFALKYGLVSSSIYVGTALLNFYAKCGDATSARMVFDGMGEKNAVTWAAMIGGCGMQGD 524

Query: 436 GEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFA 495
           G  +L  FR ML E  VP+E+ F  +L+ACSH G++EEG   F  + K     P++KH+A
Sbjct: 525 GVGSLALFRDMLKEELVPNEVVFTTLLAACSHSGMVEEGLMIFDFMCKELNFVPSMKHYA 584

Query: 496 CMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPK 555
           CM+D+L RAG   E  +FI +  + P   V+   L  C  H N +  E    ++LEL P 
Sbjct: 585 CMVDLLARAGNLQEALDFIDKMPVQPGVGVFGAFLHGCGLHSNFDFGEVAIRRMLELHPD 644

Query: 556 MESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
               YV  S++ A+ GRW     VR ++  +G+ K P  S +E+D
Sbjct: 645 QACYYVLISNLYASDGRWGMVKEVREMIKQRGLNKVPGVSLVEMD 689



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 125/469 (26%), Positives = 226/469 (48%), Gaps = 12/469 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF  +P+ +VVSW +++  Y ++   ++ + LF  M++     + F++ +++     
Sbjct: 188 ARKVFDEIPDRSVVSWTSMIVAYVQNECAEEGLMLFNRMREGFLDGNVFTVGSLVTACTK 247

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK------DPDV 117
            G +  G+ VH   I+ G  ++ +L+ SL++MY KCG   +A  VF            D+
Sbjct: 248 LGCLHQGKWVHGYVIKNGIEINSYLATSLLNMYVKCGDIGDARSVFDEFSVSTCGGGDDL 307

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           V W A+I    Q+G  Q A ++F   +   + PN   L SL+ A  +  +   G+ +H +
Sbjct: 308 VFWTAMIVGYTQRGYPQAALELFTDKKWYRILPNSVTLASLLSACAQLENIVMGKLLHVL 367

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
           + KYG + DT + N+LV MY + G +     VF     +D VSWN++ S +    S  + 
Sbjct: 368 VVKYGLD-DTSLRNSLVDMYAKCGLIPDAHYVFATTVDKDVVSWNSVISGYAQSGSAYEA 426

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGTSLVD 296
           L +F +M ++ F P+  T + +L AC+S+     G  LH   +K+ L  + + VGT+L++
Sbjct: 427 LDLFNRMRMESFLPDAVTVVGVLSACASVGAHQIGLSLHGFALKYGLVSSSIYVGTALLN 486

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
            Y K G    A + FD +  K+   + A+I      G+   +L  FR M  E +  NE  
Sbjct: 487 FYAKCGDATSARMVFDGMGEKNAVTWAAMIGGCGMQGDGVGSLALFRDMLKEELVPNEVV 546

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA-LVAMYAKCGSIDDA-EAVFKG 414
             + L  CS    +  G ++     K  + +      A +V + A+ G++ +A + + K 
Sbjct: 547 FTTLLAACSHSGMVEEGLMIFDFMCKELNFVPSMKHYACMVDLLARAGNLQEALDFIDKM 606

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
                   +   + G   H   +    A R ML+    PD+  + V++S
Sbjct: 607 PVQPGVGVFGAFLHGCGLHSNFDFGEVAIRRMLELH--PDQACYYVLIS 653



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 108/408 (26%), Positives = 190/408 (46%), Gaps = 28/408 (6%)

Query: 172 ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY 231
           +++HA +   G   DT     L+S+Y   G + +   +F  +      S+  L  R+   
Sbjct: 57  KTLHASLIISGHPPDT----TLISLYASFGFLRHARTLFHRLPSPTHHSFK-LIIRWHFL 111

Query: 232 ESPDQGLRIFYQM---LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH 288
                 +  FY +    L  F  ++  F ++LK  S L D+    +LH + +K S   + 
Sbjct: 112 NDVHSHVVSFYNLARTTLGSFN-DLVVFSILLKTASQLRDIVLTTKLHCNILK-SNAADS 169

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
            V TSLVD Y K G L DA   FD + ++ + ++T++I +Y Q   AE  L  F +MR  
Sbjct: 170 FVLTSLVDAYSKCGKLRDARKVFDEIPDRSVVSWTSMIVAYVQNECAEEGLMLFNRMREG 229

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
            +  N FT+ S +  C+ +  L  G+ +H   +K G  ++ +++T+L+ MY KCG I DA
Sbjct: 230 FLDGNVFTVGSLVTACTKLGCLHQGKWVHGYVIKNGIEINSYLATSLLNMYVKCGDIGDA 289

Query: 409 EAVFKGSALR------DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVL 462
            +VF   ++       D   W  MI GY + G  + ALE F        +P+ +T   +L
Sbjct: 290 RSVFDEFSVSTCGGGDDLVFWTAMIVGYTQRGYPQAALELFTDKKWYRILPNSVTLASLL 349

Query: 463 SACSHMGLIEEGK-KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTP 521
           SAC+ +  I  GK  H   +K  YG+  T      ++D+  + G   +  +++  T +  
Sbjct: 350 SACAQLENIVMGKLLHVLVVK--YGLDDTSLR-NSLVDMYAKCGLIPD-AHYVFATTVDK 405

Query: 522 NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISAT 569
           + + W +++   +  G+       A + L+L  +M      P  ++  
Sbjct: 406 DVVSWNSVISGYAQSGS-------AYEALDLFNRMRMESFLPDAVTVV 446


>gi|115461454|ref|NP_001054327.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|38345824|emb|CAE01858.2| OSJNBa0070M12.7 [Oryza sativa Japonica Group]
 gi|113565898|dbj|BAF16241.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|215766744|dbj|BAG98972.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222629815|gb|EEE61947.1| hypothetical protein OsJ_16704 [Oryza sativa Japonica Group]
          Length = 690

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 180/550 (32%), Positives = 295/550 (53%), Gaps = 5/550 (0%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
           ++ +L+  A    ++ G  +HA  ++LG   D  L+ +L+DMY+KCG    A +VF  + 
Sbjct: 7   IADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMP 66

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES 173
           + +VV+W A++      G  +E  ++F  MR S   PN+F L++ ++A    G  R G  
Sbjct: 67  ERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACG--GGTRAGVQ 124

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           IH V  + GFE   +V N+LV MY +        RVF+ I  ++  +WN++ S +     
Sbjct: 125 IHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQ 184

Query: 234 PDQGLRIFYQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLD--GNHVV 290
               L +F +M  +   +P+  TF  +LKACS L     G Q+HA      +    N ++
Sbjct: 185 GRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAIL 244

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
             +L+D+Y K   L  A   FD L  ++   +T +I  +AQ G+ + A+  FR+    G+
Sbjct: 245 AGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGV 304

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
           +++   L+S +   +  A +  G+ +H    KT   LD+ V+ +LV MY KCG   +A  
Sbjct: 305 RADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGR 364

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
            F+    R+  SW  MI G  KHG G +A++ F  M +EG   DE+ ++ +LSACSH GL
Sbjct: 365 RFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQEEGVEADEVAYLALLSACSHSGL 424

Query: 471 IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
           ++E +++FS I +   + P  +H+ACM+D+LGRAG+  E +  I    + P   VW+ LL
Sbjct: 425 VDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLL 484

Query: 531 GACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKK 590
            AC  H ++ +  +  + LL ++     NYV  S+I A  G W +  G+R  +  +G++K
Sbjct: 485 SACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGAMRRKGLRK 544

Query: 591 EPSCSWIEVD 600
           +  CSW EVD
Sbjct: 545 QGGCSWTEVD 554



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 117/406 (28%), Positives = 197/406 (48%), Gaps = 13/406 (3%)

Query: 154 VLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAI 213
           ++  L+RA+      R G  +HA + K GF SDT++ N L+ MY + G++     VF+ +
Sbjct: 6   MIADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGM 65

Query: 214 AHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGK 273
             ++ VSW AL   F  +    + LR+F +M   G  PN  T    LKAC   +  G   
Sbjct: 66  PERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGGGTRAGV-- 123

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
           Q+H   ++   +G+ VV  SLV MY K     DA   FD + +++L  + ++I+ YA AG
Sbjct: 124 QIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAG 183

Query: 334 EAEMALKCFRKM-RLEGIKSNEFTLASCLNGCSPVATLANGRLLH-SIAVK-TGHLLDMF 390
           +   +L  FR+M R    + +EFT AS L  CS +     G  +H ++AV+      +  
Sbjct: 184 QGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAI 243

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
           ++ AL+ +Y KC  +  A  VF G   R+   W  +I G+ + G  ++A+  FR     G
Sbjct: 244 LAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSG 303

Query: 451 YVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTE 509
              D      V++  +   L+E+GK+ H  + K   G+  ++ +   ++D+  + G   E
Sbjct: 304 VRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVAN--SLVDMYLKCGLTGE 361

Query: 510 IENFITETKLTPNALVWENLLGACSWHGN----IELDEKDAEKLLE 551
                 E     N + W  ++     HG+    I+L E+  E+ +E
Sbjct: 362 AGRRFREMP-ARNVVSWTAMINGVGKHGHGREAIDLFEEMQEEGVE 406



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 184/368 (50%), Gaps = 5/368 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + +A  VF  MPE NVVSW AL+ G+   G+ ++ + LF  M+      ++F+LS  LK 
Sbjct: 55  LHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLK- 113

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A  G  +AG  +H + +R G      ++ SLV MYSK     +A +VF  I   ++  W
Sbjct: 114 -ACGGGTRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATW 172

Query: 121 GAIITCLDQQGCCQEAAKIFNLM-RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            ++I+     G  +++  +F  M R    +P++F   SL++A +  G  R G  +HA + 
Sbjct: 173 NSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMA 232

Query: 180 KYGFE--SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
             G    S+ ++  AL+ +Y++  R+    +VF+ +  ++++ W  +           + 
Sbjct: 233 VRGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEA 292

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           + +F +    G + +      ++   +  + V  GKQ+H +T K     +  V  SLVDM
Sbjct: 293 MCLFRRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDM 352

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K G   +AG  F  +  +++ ++TA+I    + G    A+  F +M+ EG++++E   
Sbjct: 353 YLKCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQEEGVEADEVAY 412

Query: 358 ASCLNGCS 365
            + L+ CS
Sbjct: 413 LALLSACS 420



 Score = 46.2 bits (108), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 37/64 (57%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A R F+ MP  NVVSW A++NG  + G G++ + LF  M++   +  + +   +L   ++
Sbjct: 362 AGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQEEGVEADEVAYLALLSACSH 421

Query: 64  SGYI 67
           SG +
Sbjct: 422 SGLV 425


>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
 gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
          Length = 935

 Score =  331 bits (848), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 189/622 (30%), Positives = 331/622 (53%), Gaps = 32/622 (5%)

Query: 4   AKRVFKSMP---ELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLK 59
           AK+ F  +P   + +VV+WNA+++ +  +G  ++ + LF  M +D     +  +  +VL 
Sbjct: 195 AKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLD 254

Query: 60  GFANSGYIKAGQV--VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD- 116
               +G +    V  +H   +  G   + F+  +LVD Y K G  D+A +VF R  D + 
Sbjct: 255 SCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEP 314

Query: 117 ---VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATT--ETGDQRCG 171
              +V   A+I+   Q G  QE+ ++F  M     KP+   L S++ A +  + G     
Sbjct: 315 STSLVTCSAMISACWQNGWPQESLRLFFAMNLEGTKPSGVTLVSVLNACSMLQVG----- 369

Query: 172 ESIHAVICKYGFE-----SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS 226
            S  A + +   E      D ++G  L++ Y  +  +      F+AI   D VSWNA+ +
Sbjct: 370 -SATAFVLEQAMEVVSATRDNVLGTTLLTTYARSNDLPRARATFDAIQSPDVVSWNAMAA 428

Query: 227 RFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL---SDVGFGKQLHAHTIKHS 283
            +  +    + L +F +MLL+G +P++ TFI  L AC++    +    GK++ +   +  
Sbjct: 429 AYLQHHRSREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAG 488

Query: 284 LDGNHVVGTSLVDMYDKSGCLEDAGVAFD--SLANKDLFAYTAIITSYAQAGEAEMALKC 341
           L+G+  V  + ++MY K G L DA   F+  S A +D   + +++ +Y   G  + A + 
Sbjct: 489 LEGDTAVANATLNMYAKCGSLADARAVFERISPARRDCITWNSMLAAYGHHGLGKEAFEL 548

Query: 342 FRKMRLEG-IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYA 400
           F+ M  E  +K N+ T  + L+  +   ++A GR +H+  V  G   D  +  AL+ MYA
Sbjct: 549 FQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYA 608

Query: 401 KCGSIDDAEAVFKGSA--LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITF 458
           KCGS+DDA+A+F  S+    D  +W  +I GY ++G  E+AL+ F  M  +G  P+ +TF
Sbjct: 609 KCGSLDDAQAIFDKSSSNQEDVIAWTSLIAGYAQYGQAERALKLFWTMQQQGVRPNHVTF 668

Query: 459 VVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK 518
           +  L+AC+H G +E+G +  S +   +GI P  KHF+C++D+LGR G+  E E  +  T 
Sbjct: 669 ISALTACNHGGKLEQGCELLSGMTPDHGILPASKHFSCIVDLLGRCGRLDEAEKLLERTS 728

Query: 519 LTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSG 578
              + + W  LL AC     +E  E+ AE++++L+P++ S+Y+  + + A  GRWN+ + 
Sbjct: 729 -QADVITWMALLDACKNSKELERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAAT 787

Query: 579 VRALLSSQGIKKEPSCSWIEVD 600
           +R  +  +GI+ +P CS +EV+
Sbjct: 788 IRKTMLDKGIRADPGCSAVEVN 809



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 164/577 (28%), Positives = 278/577 (48%), Gaps = 41/577 (7%)

Query: 15  NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVH 74
           +V S  A++  + E G   K M LF     ME + +  +L  ++   +  G + AG+ +H
Sbjct: 108 SVYSCTAMIRAWMEHGRPDKAMELF---DRMEVRPNCHALIALVNACSCLGNLAAGRRIH 164

Query: 75  AMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP---DVVAWGAIITCLDQQG 131
           +         +  L  +L+ MYSKCG   +A + F R+      DVV W A+I+   + G
Sbjct: 165 SQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLRNG 224

Query: 132 CCQEAAKIFNLM-RESSVKPNQFVLTSLVRATTETG-----DQRCGESIHAVICKYGFES 185
             +EA ++F  M R+ +  PN     S++ +  E G     D R   +IH  I   G E 
Sbjct: 225 SAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVR---AIHGRIVGAGIER 281

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDS----VSWNALFSRFQDYESPDQGLRIF 241
           +  V  ALV  Y + G +     VF     ++     V+ +A+ S       P + LR+F
Sbjct: 282 EAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESLRLF 341

Query: 242 YQMLLKGFKPNMCTFIVILKACSSL---SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           + M L+G KP+  T + +L ACS L   S   F  +     +  + D  +V+GT+L+  Y
Sbjct: 342 FAMNLEGTKPSGVTLVSVLNACSMLQVGSATAFVLEQAMEVVSATRD--NVLGTTLLTTY 399

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            +S  L  A   FD++ + D+ ++ A+  +Y Q   +  AL  F +M LEG++ +  T  
Sbjct: 400 ARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERMLLEGVRPSVATFI 459

Query: 359 SCLNGCS---PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK-- 413
           + L  C+   P    A G+ + S+  + G   D  V+ A + MYAKCGS+ DA AVF+  
Sbjct: 460 TALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVFERI 519

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV-PDEITFVVVLSACSHMGLIE 472
             A RD  +WN M+  Y  HGLG++A E F+ M  E  V P+++TFV VL A +    I 
Sbjct: 520 SPARRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIA 579

Query: 473 EGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIEN-FITETKLTPNALVWENLL 530
           +G++ H   +   +     I++   ++++  + G   + +  F   +    + + W +L+
Sbjct: 580 QGREIHARVVSNGFESDTVIQN--ALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLI 637

Query: 531 GACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
              + +G        AE+ L+L   M+   V P+ ++
Sbjct: 638 AGYAQYGQ-------AERALKLFWTMQQQGVRPNHVT 667



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 140/492 (28%), Positives = 225/492 (45%), Gaps = 31/492 (6%)

Query: 67  IKAGQVVHA--MAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
           +K GQ +HA  ++ R+      FL+  L+ M++KCG    A  +  R     V +  A+I
Sbjct: 59  LKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEALADRFAS--VYSCTAMI 116

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
               + G   +A ++F+ M    V+PN   L +LV A +  G+   G  IH+ I    FE
Sbjct: 117 RAWMEHGRPDKAMELFDRM---EVRPNCHALIALVNACSCLGNLAAGRRIHSQISDRDFE 173

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAI---AHQDSVSWNALFSRFQDYESPDQGLRIF 241
            ++++GNAL+SMY + G +    + F+ +   + +D V+WNA+ S F    S  + L++F
Sbjct: 174 ENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLF 233

Query: 242 YQMLLKGF-KPNMCTFIVILKACS-----SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
             M   G   PN  TF+ +L +C      SL DV   + +H   +   ++    V T+LV
Sbjct: 234 RDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDV---RAIHGRIVGAGIEREAFVRTALV 290

Query: 296 DMYDKSGCLEDAGVAF----DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
           D Y K G L+DA   F    D   +  L   +A+I++  Q G  + +L+ F  M LEG K
Sbjct: 291 DSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESLRLFFAMNLEGTK 350

Query: 352 SNEFTLASCLNGCSPVAT-LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
            +  TL S LN CS +    A   +L           D  + T L+  YA+   +  A A
Sbjct: 351 PSGVTLVSVLNACSMLQVGSATAFVLEQAMEVVSATRDNVLGTTLLTTYARSNDLPRARA 410

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
            F      D  SWN M   Y++H    +AL  F  ML EG  P   TF+  L+AC+    
Sbjct: 411 TFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERMLLEGVRPSVATFITALTACAAYPP 470

Query: 471 IEEGK--KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTP---NALV 525
                  K   S+ +  G+          +++  + G   +        +++P   + + 
Sbjct: 471 QTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVF--ERISPARRDCIT 528

Query: 526 WENLLGACSWHG 537
           W ++L A   HG
Sbjct: 529 WNSMLAAYGHHG 540



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 129/238 (54%), Gaps = 16/238 (6%)

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLD-GNH-VVGTSLVDMYDKSGCLEDAGVAFD 312
           T+  +L+AC  L  +  G++LHAH +   +D  NH  + + L+ M+ K G L +A    D
Sbjct: 45  TYGCLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEALAD 104

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
             A+  +++ TA+I ++ + G  + A++ F +M    ++ N   L + +N CS +  LA 
Sbjct: 105 RFAS--VYSCTAMIRAWMEHGRPDKAMELFDRME---VRPNCHALIALVNACSCLGNLAA 159

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF---KGSALRDTASWNMMIGG 429
           GR +HS         +  +  AL++MY+KCGS+ DA+  F     ++ RD  +WN MI  
Sbjct: 160 GRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISA 219

Query: 430 YVKHGLGEKALEAFRMMLDEGY-VPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           ++++G   +AL+ FR M  +G   P+ +TFV VL +C   GL+         ++ I+G
Sbjct: 220 FLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLS-----LEDVRAIHG 272


>gi|15228257|ref|NP_188283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274288|sp|Q9LUS3.1|PP237_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16610
 gi|11994615|dbj|BAB02752.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332642322|gb|AEE75843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  330 bits (847), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 187/606 (30%), Positives = 318/606 (52%), Gaps = 9/606 (1%)

Query: 1   MELAKRVFKSMP--ELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVL 58
           +ELA+ VF  +P   +N ++W+ ++  YA +   +K + L+  M +   + +K++   VL
Sbjct: 51  VELARHVFDEIPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVL 110

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
           K  A    I  G+++H+       A D ++  +LVD Y+KCG  + A+KVF  +   D+V
Sbjct: 111 KACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMV 170

Query: 119 AWGAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           AW A+I+      C  +   +F ++ R   + PN   +  +  A    G  R G+++H  
Sbjct: 171 AWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREGKAVHGY 230

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
             + GF +D +V   ++ +Y ++  + Y  RVF+    ++ V+W+A+   + + E   + 
Sbjct: 231 CTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDLDFKKNEVTWSAMIGGYVENEMIKEA 290

Query: 238 LRIFYQMLLKGFKPNMCTFI---VILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
             +F+QML+      M T +   +IL  C+   D+  G+ +H + +K     +  V  ++
Sbjct: 291 GEVFFQMLVND-NVAMVTPVAIGLILMGCARFGDLSGGRCVHCYAVKAGFILDLTVQNTI 349

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           +  Y K G L DA   F  +  KD+ +Y ++IT        E + + F +MR  GI+ + 
Sbjct: 350 ISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCRPEESFRLFHEMRTSGIRPDI 409

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            TL   L  CS +A L +G   H   V  G+ ++  +  AL+ MY KCG +D A+ VF  
Sbjct: 410 TTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDT 469

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
              RD  SWN M+ G+  HGLG++AL  F  M + G  PDE+T + +LSACSH GL++EG
Sbjct: 470 MHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGLVDEG 529

Query: 475 KKHFSSIKK-IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           K+ F+S+ +  + + P I H+ CM D+L RAG   E  +F+ +    P+  V   LL AC
Sbjct: 530 KQLFNSMSRGDFNVIPRIDHYNCMTDLLARAGYLDEAYDFVNKMPFEPDIRVLGTLLSAC 589

Query: 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPS 593
             + N EL  + ++K+  L    ES  +  +  SA + RW D + +R +   +G+ K P 
Sbjct: 590 WTYKNAELGNEVSKKMQSLGETTESLVLLSNTYSAAE-RWEDAARIRMIQKKRGLLKTPG 648

Query: 594 CSWIEV 599
            SW++V
Sbjct: 649 YSWVDV 654


>gi|255559100|ref|XP_002520572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540232|gb|EEF41805.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 201/614 (32%), Positives = 321/614 (52%), Gaps = 21/614 (3%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
            L  +VFK+M + +V++WN +++ Y ++    + +  F  M     K S  S   V    
Sbjct: 51  RLLHKVFKTMHKRDVIAWNTMVSWYVKTERYVEAIRQFRLMMKWGIKPSPVSFVNVFPAI 110

Query: 62  ANSGYIKAGQVVHAMAIRLG--CALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           ++ G  K   V++ M ++LG   A D F+  S + MY++ G  D   KVF    +     
Sbjct: 111 SSVGDFKNANVLYGMLLKLGNEYANDLFVVSSAISMYAELGCLDLCRKVFDSCLEKSAEV 170

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVL--TSLVRATTETGDQRC---GESI 174
           W  +I    Q     E   +F      ++K    +L   + + A T     +C   G+ +
Sbjct: 171 WNTMIGGHIQNNSFLEGVYLF----LQAMKTEHTILDDVTFLSALTAVSQLQCLGLGQQM 226

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           HA   K        V NA++ MY     V     VFE +  +D VSWN + S F      
Sbjct: 227 HAFTMKNHTVLSVTVLNAILVMYSRCNSVQTSFEVFEKMPEKDVVSWNTMISGFIQNGLD 286

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL--DGNHVVGT 292
           ++GL + Y+M  +GF  +  T   +L A S+L +   GKQ HA+ I+H +  DG   + +
Sbjct: 287 EEGLMLVYEMQKQGFIADSVTVTSLLSAASNLRNREIGKQTHAYLIRHGIKFDG---MDS 343

Query: 293 SLVDMYDKSGCLEDAGVAFDS--LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
            L+DMY KSG +  +   F++  + N+D   + A+I  Y Q G  E A   FR M  + +
Sbjct: 344 YLIDMYAKSGLIRISQRVFENNNIQNRDQATWNAVIAGYTQNGLVEQAFITFRLMLEQNL 403

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
           + N  TLAS L  CS + ++  G+ LH ++++     ++FV TALV MY+K G+I+ AE+
Sbjct: 404 RPNAVTLASILPACSSLGSINLGKQLHGVSIRYSLDQNIFVRTALVDMYSKSGAINYAES 463

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           VF  S+ R++ ++  MI GY +HG+GE AL  F  M   G  PD ITFV VLSACS+ GL
Sbjct: 464 VFTQSSERNSVTYTTMILGYGQHGMGENALSLFHSMKKSGIQPDAITFVAVLSACSYAGL 523

Query: 471 IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNAL-VWENL 529
           ++EG + F S+K+ + I P+  H+ C+ D+LGR G+  E   F+ +     + + +W +L
Sbjct: 524 VDEGLRIFESMKRDFKIQPSTAHYCCVADMLGRVGRVIEAYEFVKQLGEEGHVIEIWGSL 583

Query: 530 LGACSWHGNIELDEKDAEKLLELEP--KMESNYVFPSDISATQGRWNDFSGVRALLSSQG 587
           LGAC  HG+IEL E+ + +LLE+    ++    V  S++ A +  W     +R  +  +G
Sbjct: 584 LGACRLHGHIELGEEVSNRLLEMNSVDRLAGYQVLLSNMYAEEANWETVDKLRKSMREKG 643

Query: 588 IKKEPSCSWIEVDG 601
           ++KE  CSWI+  G
Sbjct: 644 LRKEVGCSWIDTGG 657



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 130/475 (27%), Positives = 221/475 (46%), Gaps = 19/475 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFC-SMKDMEKKFSKFSLSTVLK 59
           ++L ++VF S  E +   WN ++ G+ ++    + ++LF  +MK         +  + L 
Sbjct: 153 LDLCRKVFDSCLEKSAEVWNTMIGGHIQNNSFLEGVYLFLQAMKTEHTILDDVTFLSALT 212

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             +    +  GQ +HA  ++    L   +  +++ MYS+C     + +VF ++ + DVV+
Sbjct: 213 AVSQLQCLGLGQQMHAFTMKNHTVLSVTVLNAILVMYSRCNSVQTSFEVFEKMPEKDVVS 272

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  +I+   Q G  +E   +   M++     +   +TSL+ A +   ++  G+  HA + 
Sbjct: 273 WNTMISGFIQNGLDEEGLMLVYEMQKQGFIADSVTVTSLLSAASNLRNREIGKQTHAYLI 332

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFE--AIAHQDSVSWNALFSRFQDYESPDQG 237
           ++G + D +  + L+ MY ++G +    RVFE   I ++D  +WNA+ + +      +Q 
Sbjct: 333 RHGIKFDGM-DSYLIDMYAKSGLIRISQRVFENNNIQNRDQATWNAVIAGYTQNGLVEQA 391

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
              F  ML +  +PN  T   IL ACSSL  +  GKQLH  +I++SLD N  V T+LVDM
Sbjct: 392 FITFRLMLEQNLRPNAVTLASILPACSSLGSINLGKQLHGVSIRYSLDQNIFVRTALVDM 451

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y KSG +  A   F   + ++   YT +I  Y Q G  E AL  F  M+  GI+ +  T 
Sbjct: 452 YSKSGAINYAESVFTQSSERNSVTYTTMILGYGQHGMGENALSLFHSMKKSGIQPDAITF 511

Query: 358 ASCLNGCSPVATLANG-RLLHS------IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
            + L+ CS    +  G R+  S      I   T H         +  M  + G + +A  
Sbjct: 512 VAVLSACSYAGLVDEGLRIFESMKRDFKIQPSTAHY------CCVADMLGRVGRVIEAYE 565

Query: 411 VFK--GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
             K  G        W  ++G    HG  E   E    +L+   V     + V+LS
Sbjct: 566 FVKQLGEEGHVIEIWGSLLGACRLHGHIELGEEVSNRLLEMNSVDRLAGYQVLLS 620


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 196/610 (32%), Positives = 321/610 (52%), Gaps = 18/610 (2%)

Query: 6   RVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSG 65
           +VF  + E N VSWN+L++        +  +  F  M D   + S F+L +V+   +N  
Sbjct: 154 KVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLP 213

Query: 66  Y---IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
               +  G+ VHA  +R G  L+ F+  +LV MY K G   ++  +       D+V W  
Sbjct: 214 MPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNT 272

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +++ L Q     EA +    M    V+P++F ++S++ A +     R G+ +HA   K G
Sbjct: 273 VLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNG 332

Query: 183 -FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
             + ++ VG+ALV MY    +V  G RVF+ +  +    WNA+ + +   E   + L +F
Sbjct: 333 SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLF 392

Query: 242 YQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
             M    G   N  T   ++ AC         + +H   +K  LD +  V  +L+DMY +
Sbjct: 393 IGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSR 452

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR-LE----------G 349
            G ++ A   F  + ++DL  +  +IT Y  +   E AL    KM+ LE           
Sbjct: 453 LGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVS 512

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           +K N  TL + L  C+ ++ LA G+ +H+ A+K     D+ V +ALV MYAKCG +  + 
Sbjct: 513 LKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSR 572

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
            VF     ++  +WN++I  Y  HG G++A++  RMM+ +G  P+E+TF+ V +ACSH G
Sbjct: 573 KVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSG 632

Query: 470 LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPN-ALVWEN 528
           +++EG + F  +K  YG+ P+  H+AC++D+LGRAG+  E    +       N A  W +
Sbjct: 633 MVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSS 692

Query: 529 LLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGI 588
           LLGA   H N+E+ E  A+ L++LEP + S+YV  ++I ++ G W+  + VR  +  QG+
Sbjct: 693 LLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGV 752

Query: 589 KKEPSCSWIE 598
           +KEP CSWIE
Sbjct: 753 RKEPGCSWIE 762



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 147/538 (27%), Positives = 256/538 (47%), Gaps = 22/538 (4%)

Query: 19  WNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAI 78
           W  LL     S   ++ +  +  M  +  K   ++   +LK  A+   ++ G+ +HA   
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 79  RLGCALDKF-LSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAA 137
           + G  +D   ++ +LV++Y KCG      KVF RI + + V+W ++I+ L      + A 
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 138 KIFNLMRESSVKPNQFVLTSLVRATTETGDQR---CGESIHAVICKYGFESDTLVGNALV 194
           + F  M + +V+P+ F L S+V A +          G+ +HA   + G E ++ + N LV
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLV 243

Query: 195 SMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMC 254
           +MY + G+++    +  +   +D V+WN + S     E   + L    +M+L+G +P+  
Sbjct: 244 AMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEF 303

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKH-SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
           T   +L ACS L  +  GK+LHA+ +K+ SLD N  VG++LVDMY     +      FD 
Sbjct: 304 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDG 363

Query: 314 LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE-GIKSNEFTLASCLNGCSPVATLAN 372
           + ++ +  + A+I  Y+Q    + AL  F  M    G+ +N  T+A  +  C      + 
Sbjct: 364 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 423

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
              +H   VK G   D FV   L+ MY++ G ID A  +F     RD  +WN MI GYV 
Sbjct: 424 KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVF 483

Query: 433 HGLGEKALEAFRMMLD-EGYV----------PDEITFVVVLSACSHMGLIEEGKK-HFSS 480
               E AL     M + E  V          P+ IT + +L +C+ +  + +GK+ H  +
Sbjct: 484 SEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYA 543

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           IK    +   +   + ++D+  + G   ++   + +     N + W  ++ A   HGN
Sbjct: 544 IKN--NLATDVAVGSALVDMYAKCGCL-QMSRKVFDQIPQKNVITWNVIIMAYGMHGN 598



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 140/272 (51%), Gaps = 12/272 (4%)

Query: 5   KRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSK-FSLSTVLKGFAN 63
           +RVF  M +  +  WNA++ GY+++   ++ + LF  M++     +   +++ V+     
Sbjct: 358 RRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVR 417

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           SG     + +H   ++ G   D+F+  +L+DMYS+ G  D A+++F +++D D+V W  +
Sbjct: 418 SGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTM 477

Query: 124 ITCLDQQGCCQEAA----KIFNLMRE-------SSVKPNQFVLTSLVRATTETGDQRCGE 172
           IT        ++A     K+ NL R+        S+KPN   L +++ +         G+
Sbjct: 478 ITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGK 537

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
            IHA   K    +D  VG+ALV MY + G +    +VF+ I  ++ ++WN +   +  + 
Sbjct: 538 EIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHG 597

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACS 264
           +  + + +   M+++G KPN  TFI +  ACS
Sbjct: 598 NGQEAIDLLRMMMVQGVKPNEVTFISVFAACS 629



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 131/274 (47%), Gaps = 16/274 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSK--------- 51
           +++A R+F  M + ++V+WN ++ GY  S   +  + L   M+++E+K SK         
Sbjct: 456 IDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKP 515

Query: 52  --FSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF 109
              +L T+L   A    +  G+ +HA AI+   A D  +  +LVDMY+KCG    + KVF
Sbjct: 516 NSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVF 575

Query: 110 YRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
            +I   +V+ W  II      G  QEA  +  +M    VKPN+    S+  A + +G   
Sbjct: 576 DQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVD 635

Query: 170 CGESIHAVI-CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH--QDSVSWNALFS 226
            G  I  V+   YG E  +     +V +    GR+    ++   +      + +W++L  
Sbjct: 636 EGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLG 695

Query: 227 RFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVIL 260
             + + + + G  I  Q L++  +PN+ +  V+L
Sbjct: 696 ASRIHNNLEIG-EIAAQNLIQ-LEPNVASHYVLL 727


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 196/610 (32%), Positives = 321/610 (52%), Gaps = 18/610 (2%)

Query: 6   RVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSG 65
           +VF  + E N VSWN+L++        +  +  F  M D   + S F+L +V+   +N  
Sbjct: 67  KVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLP 126

Query: 66  Y---IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
               +  G+ VHA  +R G  L+ F+  +LV MY K G   ++  +       D+V W  
Sbjct: 127 MPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNT 185

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +++ L Q     EA +    M    V+P++F ++S++ A +     R G+ +HA   K G
Sbjct: 186 VLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNG 245

Query: 183 -FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
             + ++ VG+ALV MY    +V  G RVF+ +  +    WNA+ + +   E   + L +F
Sbjct: 246 SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLF 305

Query: 242 YQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
             M    G   N  T   ++ AC         + +H   +K  LD +  V  +L+DMY +
Sbjct: 306 IGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSR 365

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR-LE----------G 349
            G ++ A   F  + ++DL  +  +IT Y  +   E AL    KM+ LE           
Sbjct: 366 LGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVS 425

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           +K N  TL + L  C+ ++ LA G+ +H+ A+K     D+ V +ALV MYAKCG +  + 
Sbjct: 426 LKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSR 485

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
            VF     ++  +WN++I  Y  HG G++A++  RMM+ +G  P+E+TF+ V +ACSH G
Sbjct: 486 KVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSG 545

Query: 470 LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPN-ALVWEN 528
           +++EG + F  +K  YG+ P+  H+AC++D+LGRAG+  E    +       N A  W +
Sbjct: 546 MVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSS 605

Query: 529 LLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGI 588
           LLGA   H N+E+ E  A+ L++LEP + S+YV  ++I ++ G W+  + VR  +  QG+
Sbjct: 606 LLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGV 665

Query: 589 KKEPSCSWIE 598
           +KEP CSWIE
Sbjct: 666 RKEPGCSWIE 675



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 142/509 (27%), Positives = 246/509 (48%), Gaps = 22/509 (4%)

Query: 48  KFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKF-LSCSLVDMYSKCGLADNAL 106
           K   ++   +LK  A+   ++ G+ +HA   + G  +D   ++ +LV++Y KCG      
Sbjct: 7   KPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVY 66

Query: 107 KVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
           KVF RI + + V+W ++I+ L      + A + F  M + +V+P+ F L S+V A +   
Sbjct: 67  KVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLP 126

Query: 167 DQR---CGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNA 223
                  G+ +HA   + G E ++ + N LV+MY + G+++    +  +   +D V+WN 
Sbjct: 127 MPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNT 185

Query: 224 LFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKH- 282
           + S     E   + L    +M+L+G +P+  T   +L ACS L  +  GK+LHA+ +K+ 
Sbjct: 186 VLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNG 245

Query: 283 SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCF 342
           SLD N  VG++LVDMY     +      FD + ++ +  + A+I  Y+Q    + AL  F
Sbjct: 246 SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLF 305

Query: 343 RKMRLE-GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAK 401
             M    G+ +N  T+A  +  C      +    +H   VK G   D FV   L+ MY++
Sbjct: 306 IGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSR 365

Query: 402 CGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD-EGYV-------- 452
            G ID A  +F     RD  +WN MI GYV     E AL     M + E  V        
Sbjct: 366 LGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVS 425

Query: 453 --PDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTE 509
             P+ IT + +L +C+ +  + +GK+ H  +IK    +   +   + ++D+  + G   +
Sbjct: 426 LKPNSITLMTILPSCAALSALAKGKEIHAYAIKN--NLATDVAVGSALVDMYAKCGCL-Q 482

Query: 510 IENFITETKLTPNALVWENLLGACSWHGN 538
           +   + +     N + W  ++ A   HGN
Sbjct: 483 MSRKVFDQIPQKNVITWNVIIMAYGMHGN 511



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 175/328 (53%), Gaps = 7/328 (2%)

Query: 148 VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTL-VGNALVSMYMENGRVSYG 206
           +KP+ +   +L++A  +  D   G+ IHA + K+G+  D++ V N LV++Y + G     
Sbjct: 6   IKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAV 65

Query: 207 SRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266
            +VF+ I+ ++ VSWN+L S    +E  +  L  F  ML +  +P+  T + ++ ACS+L
Sbjct: 66  YKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL 125

Query: 267 ---SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYT 323
                +  GKQ+HA+ ++   + N  +  +LV MY K G L  + V   S   +DL  + 
Sbjct: 126 PMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWN 184

Query: 324 AIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKT 383
            +++S  Q  +   AL+  R+M LEG++ +EFT++S L  CS +  L  G+ LH+ A+K 
Sbjct: 185 TVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKN 244

Query: 384 GHL-LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEA 442
           G L  + FV +ALV MY  C  +     VF G   R    WN MI GY ++   ++AL  
Sbjct: 245 GSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLL 304

Query: 443 FRMMLDE-GYVPDEITFVVVLSACSHMG 469
           F  M +  G + +  T   V+ AC   G
Sbjct: 305 FIGMEESAGLLANSTTMAGVVPACVRSG 332



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 127/237 (53%), Gaps = 5/237 (2%)

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGTSLVDMYDKSG 302
           M++ G KP+   F  +LKA + L D+  GKQ+HAH  K     + V V  +LV++Y K G
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
                   FD ++ ++  ++ ++I+S     + EMAL+ FR M  E ++ + FTL S + 
Sbjct: 61  DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 120

Query: 363 GCSPVAT---LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            CS +     L  G+ +H+  ++ G  L+ F+   LVAMY K G +  ++ +      RD
Sbjct: 121 ACSNLPMPEGLMMGKQVHAYGLRKGE-LNSFIINTLVAMYGKLGKLASSKVLLGSFGGRD 179

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
             +WN ++    ++    +ALE  R M+ EG  PDE T   VL ACSH+ ++  GK+
Sbjct: 180 LVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKE 236



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 140/273 (51%), Gaps = 12/273 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSK-FSLSTVLKGFA 62
            +RVF  M +  +  WNA++ GY+++   ++ + LF  M++     +   +++ V+    
Sbjct: 270 GRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACV 329

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
            SG     + +H   ++ G   D+F+  +L+DMYS+ G  D A+++F +++D D+V W  
Sbjct: 330 RSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNT 389

Query: 123 IITCLDQQGCCQEAA----KIFNLMRE-------SSVKPNQFVLTSLVRATTETGDQRCG 171
           +IT        ++A     K+ NL R+        S+KPN   L +++ +         G
Sbjct: 390 MITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKG 449

Query: 172 ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY 231
           + IHA   K    +D  VG+ALV MY + G +    +VF+ I  ++ ++WN +   +  +
Sbjct: 450 KEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMH 509

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACS 264
            +  + + +   M+++G KPN  TFI +  ACS
Sbjct: 510 GNGQEAIDLLRMMMVQGVKPNEVTFISVFAACS 542



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 131/274 (47%), Gaps = 16/274 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSK--------- 51
           +++A R+F  M + ++V+WN ++ GY  S   +  + L   M+++E+K SK         
Sbjct: 369 IDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKP 428

Query: 52  --FSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF 109
              +L T+L   A    +  G+ +HA AI+   A D  +  +LVDMY+KCG    + KVF
Sbjct: 429 NSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVF 488

Query: 110 YRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
            +I   +V+ W  II      G  QEA  +  +M    VKPN+    S+  A + +G   
Sbjct: 489 DQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVD 548

Query: 170 CGESIHAVI-CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH--QDSVSWNALFS 226
            G  I  V+   YG E  +     +V +    GR+    ++   +      + +W++L  
Sbjct: 549 EGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLG 608

Query: 227 RFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVIL 260
             + + + + G  I  Q L++  +PN+ +  V+L
Sbjct: 609 ASRIHNNLEIG-EIAAQNLIQ-LEPNVASHYVLL 640


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 196/610 (32%), Positives = 321/610 (52%), Gaps = 18/610 (2%)

Query: 6   RVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSG 65
           +VF  + E N VSWN+L++        +  +  F  M D   + S F+L +V+   +N  
Sbjct: 154 KVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLP 213

Query: 66  Y---IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
               +  G+ VHA  +R G  L+ F+  +LV MY K G   ++  +       D+V W  
Sbjct: 214 MPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNT 272

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +++ L Q     EA +    M    V+P++F ++S++ A +     R G+ +HA   K G
Sbjct: 273 VLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNG 332

Query: 183 -FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
             + ++ VG+ALV MY    +V  G RVF+ +  +    WNA+ + +   E   + L +F
Sbjct: 333 SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLF 392

Query: 242 YQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
             M    G   N  T   ++ AC         + +H   +K  LD +  V  +L+DMY +
Sbjct: 393 IGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSR 452

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR-LE----------G 349
            G ++ A   F  + ++DL  +  +IT Y  +   E AL    KM+ LE           
Sbjct: 453 LGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVS 512

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           +K N  TL + L  C+ ++ LA G+ +H+ A+K     D+ V +ALV MYAKCG +  + 
Sbjct: 513 LKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSR 572

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
            VF     ++  +WN++I  Y  HG G++A++  RMM+ +G  P+E+TF+ V +ACSH G
Sbjct: 573 KVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSG 632

Query: 470 LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPN-ALVWEN 528
           +++EG + F  +K  YG+ P+  H+AC++D+LGRAG+  E    +       N A  W +
Sbjct: 633 MVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSS 692

Query: 529 LLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGI 588
           LLGA   H N+E+ E  A+ L++LEP + S+YV  ++I ++ G W+  + VR  +  QG+
Sbjct: 693 LLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGV 752

Query: 589 KKEPSCSWIE 598
           +KEP CSWIE
Sbjct: 753 RKEPGCSWIE 762



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 147/538 (27%), Positives = 256/538 (47%), Gaps = 22/538 (4%)

Query: 19  WNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAI 78
           W  LL     S   ++ +  +  M  +  K   ++   +LK  A+   ++ G+ +HA   
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 79  RLGCALDKF-LSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAA 137
           + G  +D   ++ +LV++Y KCG      KVF RI + + V+W ++I+ L      + A 
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 138 KIFNLMRESSVKPNQFVLTSLVRATTETGDQR---CGESIHAVICKYGFESDTLVGNALV 194
           + F  M + +V+P+ F L S+V A +          G+ +HA   + G E ++ + N LV
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLV 243

Query: 195 SMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMC 254
           +MY + G+++    +  +   +D V+WN + S     E   + L    +M+L+G +P+  
Sbjct: 244 AMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEF 303

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKH-SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
           T   +L ACS L  +  GK+LHA+ +K+ SLD N  VG++LVDMY     +      FD 
Sbjct: 304 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDG 363

Query: 314 LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE-GIKSNEFTLASCLNGCSPVATLAN 372
           + ++ +  + A+I  Y+Q    + AL  F  M    G+ +N  T+A  +  C      + 
Sbjct: 364 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 423

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
              +H   VK G   D FV   L+ MY++ G ID A  +F     RD  +WN MI GYV 
Sbjct: 424 KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVF 483

Query: 433 HGLGEKALEAFRMMLD-EGYV----------PDEITFVVVLSACSHMGLIEEGKK-HFSS 480
               E AL     M + E  V          P+ IT + +L +C+ +  + +GK+ H  +
Sbjct: 484 SEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYA 543

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           IK    +   +   + ++D+  + G   ++   + +     N + W  ++ A   HGN
Sbjct: 544 IKN--NLATDVAVGSALVDMYAKCGCL-QMSRKVFDQIPQKNVITWNVIIMAYGMHGN 598



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 140/272 (51%), Gaps = 12/272 (4%)

Query: 5   KRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSK-FSLSTVLKGFAN 63
           +RVF  M +  +  WNA++ GY+++   ++ + LF  M++     +   +++ V+     
Sbjct: 358 RRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVR 417

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           SG     + +H   ++ G   D+F+  +L+DMYS+ G  D A+++F +++D D+V W  +
Sbjct: 418 SGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTM 477

Query: 124 ITCLDQQGCCQEAA----KIFNLMRE-------SSVKPNQFVLTSLVRATTETGDQRCGE 172
           IT        ++A     K+ NL R+        S+KPN   L +++ +         G+
Sbjct: 478 ITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGK 537

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
            IHA   K    +D  VG+ALV MY + G +    +VF+ I  ++ ++WN +   +  + 
Sbjct: 538 EIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHG 597

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACS 264
           +  + + +   M+++G KPN  TFI +  ACS
Sbjct: 598 NGQEAIDLLRMMMVQGVKPNEVTFISVFAACS 629



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 131/274 (47%), Gaps = 16/274 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSK--------- 51
           +++A R+F  M + ++V+WN ++ GY  S   +  + L   M+++E+K SK         
Sbjct: 456 IDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKP 515

Query: 52  --FSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF 109
              +L T+L   A    +  G+ +HA AI+   A D  +  +LVDMY+KCG    + KVF
Sbjct: 516 NSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVF 575

Query: 110 YRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
            +I   +V+ W  II      G  QEA  +  +M    VKPN+    S+  A + +G   
Sbjct: 576 DQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVD 635

Query: 170 CGESIHAVI-CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH--QDSVSWNALFS 226
            G  I  V+   YG E  +     +V +    GR+    ++   +      + +W++L  
Sbjct: 636 EGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLG 695

Query: 227 RFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVIL 260
             + + + + G  I  Q L++  +PN+ +  V+L
Sbjct: 696 ASRIHNNLEIG-EIAAQNLIQ-LEPNVASHYVLL 727


>gi|413946633|gb|AFW79282.1| hypothetical protein ZEAMMB73_599854 [Zea mays]
          Length = 863

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 194/598 (32%), Positives = 306/598 (51%), Gaps = 1/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A RVF  MPE +V SWN ++ GY +SG   + + L+  M     +   ++   VL+    
Sbjct: 142 AWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAGVRPDVYTFPCVLRSCGG 201

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
               + G+ VHA  +R G   +  +  +L+ MY+KCG    A KVF  +   D ++W A+
Sbjct: 202 VPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAARKVFDSMTVMDCISWNAM 261

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    + G C    ++F  M    V+PN   +TS+  A+    D    + +H +  K GF
Sbjct: 262 IAGHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLSDVTFAKEMHGLAVKRGF 321

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D    N+L+ MY   G +     VF  +  +D+++W A+ S ++    PD+ L ++  
Sbjct: 322 AGDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDKALEVYAL 381

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M +    P+  T    L AC+ L  +  G +LH            VV  ++++MY KS  
Sbjct: 382 MEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFISYIVVTNAILEMYAKSKR 441

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++ A   F  +  KD+ +++++I  +        AL  FR M L  +K N  T  + L  
Sbjct: 442 IDKAIEVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFRHM-LADVKPNSVTFIAALAA 500

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+    L +G+ +H+  ++ G   + ++  AL+ +Y KCG    A A F     +D  SW
Sbjct: 501 CAATGALRSGKEIHAHVLRCGIEYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSW 560

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N+MI G+V HG G+ AL  F  M+  G  PDE+TFV +L ACS  G++ EG + F S+ +
Sbjct: 561 NIMIAGFVAHGHGDTALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTE 620

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            Y I P +KH+ACM+D+L RAG+ TE  NFI E  +TP+A VW  LL  C  H ++EL E
Sbjct: 621 KYSIVPNLKHYACMVDLLSRAGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGE 680

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
             A+ +L LEP     +V   D+ A    W+  + VR  +  +G+  +  CSW+EV G
Sbjct: 681 LAAKYVLALEPNDAGYHVLLCDLYADACLWDKLARVRKTMREKGLDHDSGCSWVEVKG 738



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 116/389 (29%), Positives = 202/389 (51%), Gaps = 1/389 (0%)

Query: 88  LSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESS 147
           L  +++ M  + G   +A +VF ++ + DV +W  ++    + G   EA  +++ M  + 
Sbjct: 125 LGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAG 184

Query: 148 VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGS 207
           V+P+ +    ++R+     D R G  +HA + ++GF  +  V NAL++MY + G V    
Sbjct: 185 VRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAAR 244

Query: 208 RVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLS 267
           +VF+++   D +SWNA+ +   +    + GL +F  ML    +PN+ T   +  A   LS
Sbjct: 245 KVFDSMTVMDCISWNAMIAGHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLS 304

Query: 268 DVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIIT 327
           DV F K++H   +K    G+     SL+ MY   G +  A   F  +  +D   +TA+I+
Sbjct: 305 DVTFAKEMHGLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMIS 364

Query: 328 SYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL 387
            Y + G  + AL+ +  M +  +  ++ T+AS L  C+ + +L  G  LH +A   G + 
Sbjct: 365 GYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFIS 424

Query: 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML 447
            + V+ A++ MYAK   ID A  VFK    +D  SW+ MI G+  +    +AL  FR ML
Sbjct: 425 YIVVTNAILEMYAKSKRIDKAIEVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFRHML 484

Query: 448 DEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            +   P+ +TF+  L+AC+  G +  GK+
Sbjct: 485 AD-VKPNSVTFIAALAACAATGALRSGKE 512



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 156/310 (50%), Gaps = 6/310 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A+ VF  M   + ++W A+++GY ++G   K + ++  M+         ++++ L  
Sbjct: 341 MRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAA 400

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A  G +  G  +H +A   G      ++ ++++MY+K    D A++VF  + + DVV+W
Sbjct: 401 CACLGSLDVGVKLHELAESKGFISYIVVTNAILEMYAKSKRIDKAIEVFKCMHEKDVVSW 460

Query: 121 GAIIT--CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            ++I   C + +    EA   F  M  + VKPN     + + A   TG  R G+ IHA +
Sbjct: 461 SSMIAGFCFNHRNF--EALYYFRHML-ADVKPNSVTFIAALAACAATGALRSGKEIHAHV 517

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            + G E +  + NAL+ +Y++ G+  Y    F A   +D VSWN + + F  +   D  L
Sbjct: 518 LRCGIEYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGHGDTAL 577

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL-HAHTIKHSLDGNHVVGTSLVDM 297
             F QM+  G  P+  TF+ +L ACS    V  G +L H+ T K+S+  N      +VD+
Sbjct: 578 SFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTEKYSIVPNLKHYACMVDL 637

Query: 298 YDKSGCLEDA 307
             ++G L +A
Sbjct: 638 LSRAGQLTEA 647


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 187/577 (32%), Positives = 301/577 (52%), Gaps = 42/577 (7%)

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADN------ALKVFYRIKDPD 116
           N   +++ +++HA  I+ G     +    L++    C L+ N      A+ VF  I++P+
Sbjct: 11  NCKTLQSLRIIHAQMIKTGLHNTNYALSRLLEF---CILSPNFDGLPYAISVFETIQEPN 67

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
           ++ W  +            A K++  M    + PN +    L+++  +    + G+ IH 
Sbjct: 68  LLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHG 127

Query: 177 VICKYGFESDTLVGNALVSMYMENGR----------------VSY--------------- 205
            + K G+E D  V  +L+SMY++NGR                VSY               
Sbjct: 128 HVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIES 187

Query: 206 GSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSS 265
             ++F+ I  +D VSWNA+ S + D  +  + L +F +M+    KP+  T + ++ AC+ 
Sbjct: 188 AQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQ 247

Query: 266 LSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
              +  G+Q+H+    H L  N  +  +L+D+Y K G +E A   F  L+NKD+ ++  +
Sbjct: 248 SGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTM 307

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVK--T 383
           I  Y      + AL  F++M   G   N+ T+ S L  C+ +  +  GR +H    K   
Sbjct: 308 IGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIK 367

Query: 384 GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF 443
           G      + T+L+ MYAKCG I+ A  VF     R  ++ N MI G+  HG    A + F
Sbjct: 368 GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIF 427

Query: 444 RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGR 503
             M   G  PD+ITFV +LSACSH G+++ G++ F S+ + Y ITP ++H+ CMID+LG 
Sbjct: 428 SRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGH 487

Query: 504 AGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFP 563
            G F E E  I    + P+ ++W +LL AC  HGN+EL E  A+KL+++EP+   +YV  
Sbjct: 488 LGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVLL 547

Query: 564 SDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           S+I AT GRWN+ + +RALL+ +G+KK P CS IE+D
Sbjct: 548 SNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEID 584



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 142/546 (26%), Positives = 242/546 (44%), Gaps = 68/546 (12%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A  VF+++ E N++ WN +  G+A S D    + L+  M  +    + ++   +LK 
Sbjct: 53  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKS 112

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKC--------------------- 99
            A     K GQ +H   ++LG  LD ++  SL+ MY K                      
Sbjct: 113 CAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSY 172

Query: 100 ----------GLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK 149
                     G  ++A K+F  I   DVV+W AII+     G  +EA  +F  M +++VK
Sbjct: 173 TALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVK 232

Query: 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRV 209
           P++  + ++V A  ++G  + G  +H+ I  +G  S+  + NAL+ +Y + G V     +
Sbjct: 233 PDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGL 292

Query: 210 FEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDV 269
           F+ ++++D +SWN +   +       + L +F +ML  G  PN  T + IL AC+ L  +
Sbjct: 293 FQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAI 352

Query: 270 GFGKQLHAHTIKH--SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIIT 327
            FG+ +H +  K    +     + TSL+DMY K G +E A   F+S+ ++ L A  A+I 
Sbjct: 353 DFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIF 412

Query: 328 SYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL 387
            +A  G A  A   F +MR  GI+ ++ T    L+ CS    L  GR             
Sbjct: 413 GFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRR------------ 460

Query: 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML 447
              +  ++   Y     ++                +  MI      GL ++A E    M 
Sbjct: 461 ---IFRSMTQNYKITPKLE---------------HYGCMIDLLGHLGLFKEAEEMINTMT 502

Query: 448 DEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKF 507
            E   PD + +  +L AC   G +E G+     + KI    P    +  + +I   AG++
Sbjct: 503 ME---PDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENP--GSYVLLSNIYATAGRW 557

Query: 508 TEIENF 513
            E+ N 
Sbjct: 558 NEVANI 563


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 186/616 (30%), Positives = 319/616 (51%), Gaps = 38/616 (6%)

Query: 19  WNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAI 78
           + +LL    ES +  +   L C +    K+   F  + ++     + Y K G + +A  +
Sbjct: 8   YASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLI-----TAYYKLGNLAYAHHV 62

Query: 79  RLGCALDKFLSC-SLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAA 137
                     S  +++ +YSK GL     ++F  +   D V+W   I+     G C +A 
Sbjct: 63  FDHIPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAV 122

Query: 138 KIFNLM-RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSM 196
           +++ LM +++++  N+   ++++   ++      G  I+  I K+GF SD  VG+ LV M
Sbjct: 123 RVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDM 182

Query: 197 Y-------------------------------MENGRVSYGSRVFEAIAHQDSVSWNALF 225
           Y                               M  G +    R+F  +  +DS+SW  + 
Sbjct: 183 YTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMI 242

Query: 226 SRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLD 285
           +         + L +F +M L GF  +  TF  +L AC SL  +G GKQ+HA+ I+    
Sbjct: 243 TGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHK 302

Query: 286 GNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM 345
            N  VG++LVDMY K   ++ A   F  +  K++ ++TA++  Y Q G +E A+K F +M
Sbjct: 303 DNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEM 362

Query: 346 RLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSI 405
           +  G++ ++FTL S ++ C+ +A+L  G   H  A+ +G +  + VS AL+ +Y KCGS 
Sbjct: 363 QRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGST 422

Query: 406 DDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC 465
           +++  +F    +RD  SW  ++ GY + G   + +  F  ML  G  PD +TF+ VLSAC
Sbjct: 423 ENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSAC 482

Query: 466 SHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV 525
           S  GL+E+G ++F S+ K +GI P + H  C+ID+LGRAG+  E  NFI      P+ + 
Sbjct: 483 SRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVG 542

Query: 526 WENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSS 585
           W  LL +C  HG++E+ +  A+ L+ LEP+  ++YV  S + A++G+W+  + +R  +  
Sbjct: 543 WATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRD 602

Query: 586 QGIKKEPSCSWIEVDG 601
           + ++KEP  SWI+  G
Sbjct: 603 KRVRKEPGYSWIKYKG 618



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 110/466 (23%), Positives = 210/466 (45%), Gaps = 38/466 (8%)

Query: 5   KRVFKSMPELNVVSWNALLNGYAESG---DGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           +++F  MP  + VSWN  ++GYA  G   D  +V  L   +KD     ++ + ST+L   
Sbjct: 91  QQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLM--LKDAAMNLNRITFSTMLILC 148

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSK----------------------- 98
           +    +  G+ ++   ++ G   D F+   LVDMY+K                       
Sbjct: 149 SKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCN 208

Query: 99  --------CGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKP 150
                   CG+ + + ++F  +K+ D ++W  +IT L Q G  +EA  +F  MR +    
Sbjct: 209 TMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAM 268

Query: 151 NQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF 210
           +QF   S++ A         G+ IHA + +   + +  VG+ALV MY +   +     VF
Sbjct: 269 DQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVF 328

Query: 211 EAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVG 270
           + +  ++ +SW A+   +      ++ ++IF++M   G +P+  T   ++ +C++L+ + 
Sbjct: 329 KRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLE 388

Query: 271 FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
            G Q H   +   L     V  +L+ +Y K G  E++   F  +  +D  ++TA++  YA
Sbjct: 389 EGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYA 448

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG-RLLHSIAVKTGHLLDM 389
           Q G+A   +  F +M   G+K +  T    L+ CS    +  G +   S+  + G +  +
Sbjct: 449 QFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIV 508

Query: 390 FVSTALVAMYAKCGSIDDAEAVFKGSALR-DTASWNMMIGGYVKHG 434
              T ++ +  + G +++A           D   W  ++     HG
Sbjct: 509 DHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHG 554



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 170/340 (50%), Gaps = 2/340 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E ++R+F  + E + +SW  ++ G  ++G  ++ + +F  M+       +F+  +VL  
Sbjct: 220 IEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTA 279

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +   +  G+ +HA  IR     + F+  +LVDMYSKC    +A  VF R+   +V++W
Sbjct: 280 CGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISW 339

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A++    Q G  +EA KIF  M+ + V+P+ F L S++ +         G   H     
Sbjct: 340 TAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALV 399

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G  S   V NAL+++Y + G      R+F  +  +D VSW AL + +  +   ++ + +
Sbjct: 400 SGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGL 459

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK-HSLDGNHVVGTSLVDMYD 299
           F +ML  G KP+  TFI +L ACS    V  G Q     IK H +       T ++D+  
Sbjct: 460 FERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLG 519

Query: 300 KSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMA 338
           ++G LE+A    +++  + D+  +  +++S    G+ E+ 
Sbjct: 520 RAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDMEIG 559


>gi|302821737|ref|XP_002992530.1| hypothetical protein SELMODRAFT_135370 [Selaginella moellendorffii]
 gi|300139732|gb|EFJ06468.1| hypothetical protein SELMODRAFT_135370 [Selaginella moellendorffii]
          Length = 849

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 186/602 (30%), Positives = 317/602 (52%), Gaps = 5/602 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF S+   NV SW  LL  YA++G  + V+ L   M  +    +  +L+TV+   + 
Sbjct: 135 ARLVFSSIRHPNVYSWTILLAAYAQNGHHKTVLELLRQMDLLGVWPNAVTLATVIGAVSE 194

Query: 64  SGYIKAGQVVHAMAIRLGCAL--DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
            G     + +HA A    C L  D  L  +L+DMY+KCG   +A  VF + ++ D+    
Sbjct: 195 LGDWDEARKIHARAAAT-CQLTYDVVLVTALIDMYAKCGDIFHAEVVFDQARNKDLACCN 253

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           A+I+   Q G   +A   FN ++ S ++PNQ     L RA    G        H      
Sbjct: 254 AMISAYIQLGYTVDAVSTFNRIQPSGLQPNQVTYALLFRACATNGVYSDARVAHMCFILS 313

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
               D +V  ALVSMY   G +    RVF+ +  ++ V+WN + + +      D+ L+++
Sbjct: 314 KLRPDVVVNTALVSMYSRCGSLEDARRVFDRMPGKNVVTWNVMIAGYAQEGYTDEALQLY 373

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
             M   G +P+  TF+ +L++CS    +  G+ +H H +    D +  V ++L+ MY   
Sbjct: 374 VSMEAAGVEPDEITFVNVLESCSLAEHLAAGRDIHKHVVDAGYDSSLTVLSALITMYSAC 433

Query: 302 GCLEDAGVAFDS--LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           G L DA   F      +  + ++TA++T+  + GE   AL  FRKM LEG+K+N  T  S
Sbjct: 434 GSLGDAVDVFHKGVTTHSSVISWTAMLTALTRNGEGRSALALFRKMDLEGVKANVVTFVS 493

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            ++ CS +  L  G  +    + TG+L+D+ + T+L+ +Y KCG +D A  VF   + ++
Sbjct: 494 TIDACSSIGALVEGHAIFERVIVTGYLIDVVLGTSLINLYGKCGRLDYALEVFHHLSFKN 553

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             +WN ++    ++G    + E  + M  +G  P+E+T + +L  CSH GL+ +   +F 
Sbjct: 554 IVTWNTILAASSQNGEETLSAELLQEMDLDGAQPNEMTLLNMLFGCSHNGLVAKAVSYFR 613

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           S+   + + PT +H+ C++D+LGR+G+  E+E FI+    + ++++W +LLG+C  H ++
Sbjct: 614 SMVYGHCLVPTSEHYGCLVDLLGRSGQLEEVEAFISSKPFSLDSVLWMSLLGSCVIHSDV 673

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           E   + A ++L L+PK  S YV  S++ A  G  +    +  L   + +KKE S S+IEV
Sbjct: 674 ERGLRAARRVLGLDPKNASPYVLLSNMFAAIGMLDAVKSLAKLAGERAMKKEQSRSYIEV 733

Query: 600 DG 601
           +G
Sbjct: 734 NG 735



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 138/474 (29%), Positives = 222/474 (46%), Gaps = 12/474 (2%)

Query: 85  DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMR 144
           D+ L   +V+ Y KCG   +A  VF  I+ P+V +W  ++    Q G  +   ++   M 
Sbjct: 115 DRLLLNCVVEAYGKCGCVKDARLVFSSIRHPNVYSWTILLAAYAQNGHHKTVLELLRQMD 174

Query: 145 ESSVKPNQFVLTSLVRATTETGDQRCGESIH---AVICKYGFESDTLVGNALVSMYMENG 201
              V PN   L +++ A +E GD      IH   A  C+  +  D ++  AL+ MY + G
Sbjct: 175 LLGVWPNAVTLATVIGAVSELGDWDEARKIHARAAATCQLTY--DVVLVTALIDMYAKCG 232

Query: 202 RVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILK 261
            + +   VF+   ++D    NA+ S +         +  F ++   G +PN  T+ ++ +
Sbjct: 233 DIFHAEVVFDQARNKDLACCNAMISAYIQLGYTVDAVSTFNRIQPSGLQPNQVTYALLFR 292

Query: 262 ACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFA 321
           AC++       +  H   I   L  + VV T+LV MY + G LEDA   FD +  K++  
Sbjct: 293 ACATNGVYSDARVAHMCFILSKLRPDVVVNTALVSMYSRCGSLEDARRVFDRMPGKNVVT 352

Query: 322 YTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAV 381
           +  +I  YAQ G  + AL+ +  M   G++ +E T  + L  CS    LA GR +H   V
Sbjct: 353 WNVMIAGYAQEGYTDEALQLYVSMEAAGVEPDEITFVNVLESCSLAEHLAAGRDIHKHVV 412

Query: 382 KTGHLLDMFVSTALVAMYAKCGSIDDAEAVF-KGSALRDTA-SWNMMIGGYVKHGLGEKA 439
             G+   + V +AL+ MY+ CGS+ DA  VF KG     +  SW  M+    ++G G  A
Sbjct: 413 DAGYDSSLTVLSALITMYSACGSLGDAVDVFHKGVTTHSSVISWTAMLTALTRNGEGRSA 472

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMID 499
           L  FR M  EG   + +TFV  + ACS +G + EG   F  +  + G    +     +I+
Sbjct: 473 LALFRKMDLEGVKANVVTFVSTIDACSSIGALVEGHAIFERV-IVTGYLIDVVLGTSLIN 531

Query: 500 ILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELE 553
           + G+ G+               N + W  +L A S +G   L    AE L E++
Sbjct: 532 LYGKCGRLDYALEVFHHLSFK-NIVTWNTILAASSQNGEETL---SAELLQEMD 581



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 118/396 (29%), Positives = 192/396 (48%), Gaps = 15/396 (3%)

Query: 148 VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG-FESDTLVGNALVSMYMENGRVSYG 206
           V P  +V  SL++   + GD    ++I A I     F  D L+ N +V  Y + G V   
Sbjct: 81  VDPAAYV--SLLK---QAGDVTALKTIQAHISHSKRFSGDRLLLNCVVEAYGKCGCVKDA 135

Query: 207 SRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266
             VF +I H +  SW  L + +         L +  QM L G  PN  T   ++ A S L
Sbjct: 136 RLVFSSIRHPNVYSWTILLAAYAQNGHHKTVLELLRQMDLLGVWPNAVTLATVIGAVSEL 195

Query: 267 SDVGFGKQLHAHTIKH-SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
            D    +++HA       L  + V+ T+L+DMY K G +  A V FD   NKDL    A+
Sbjct: 196 GDWDEARKIHARAAATCQLTYDVVLVTALIDMYAKCGDIFHAEVVFDQARNKDLACCNAM 255

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH 385
           I++Y Q G    A+  F +++  G++ N+ T A     C+     ++ R+ H   + +  
Sbjct: 256 ISAYIQLGYTVDAVSTFNRIQPSGLQPNQVTYALLFRACATNGVYSDARVAHMCFILSKL 315

Query: 386 LLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRM 445
             D+ V+TALV+MY++CGS++DA  VF     ++  +WN+MI GY + G  ++AL+ +  
Sbjct: 316 RPDVVVNTALVSMYSRCGSLEDARRVFDRMPGKNVVTWNVMIAGYAQEGYTDEALQLYVS 375

Query: 446 MLDEGYVPDEITFVVVLSACS---HMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILG 502
           M   G  PDEITFV VL +CS   H+    +  KH        G   ++   + +I +  
Sbjct: 376 MEAAGVEPDEITFVNVLESCSLAEHLAAGRDIHKHVVDA----GYDSSLTVLSALITMYS 431

Query: 503 RAGKFTEIENFITETKLTPNALV-WENLLGACSWHG 537
             G   +  +   +   T ++++ W  +L A + +G
Sbjct: 432 ACGSLGDAVDVFHKGVTTHSSVISWTAMLTALTRNG 467



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 180/394 (45%), Gaps = 24/394 (6%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+RVF  MP  NVV+WN ++ GYA+ G   + + L+ SM+    +  + +   VL+ 
Sbjct: 335 LEDARRVFDRMPGKNVVTWNVMIAGYAQEGYTDEALQLYVSMEAAGVEPDEITFVNVLES 394

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYR--IKDPDVV 118
            + + ++ AG+ +H   +  G      +  +L+ MYS CG   +A+ VF++       V+
Sbjct: 395 CSLAEHLAAGRDIHKHVVDAGYDSSLTVLSALITMYSACGSLGDAVDVFHKGVTTHSSVI 454

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +W A++T L + G  + A  +F  M    VK N     S + A +  G    G +I   +
Sbjct: 455 SWTAMLTALTRNGEGRSALALFRKMDLEGVKANVVTFVSTIDACSSIGALVEGHAIFERV 514

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
              G+  D ++G +L+++Y + GR+ Y   VF  ++ ++ V+WN + +            
Sbjct: 515 IVTGYLIDVVLGTSLINLYGKCGRLDYALEVFHHLSFKNIVTWNTILAASSQNGEETLSA 574

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS----- 293
            +  +M L G +PN  T + +L  CS    V           +  + G+ +V TS     
Sbjct: 575 ELLQEMDLDGAQPNEMTLLNMLFGCSHNGLVAKAVSY----FRSMVYGHCLVPTSEHYGC 630

Query: 294 LVDMYDKSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK- 351
           LVD+  +SG LE+      S   + D   + +++ S     + E  L+  R  R+ G+  
Sbjct: 631 LVDLLGRSGQLEEVEAFISSKPFSLDSVLWMSLLGSCVIHSDVERGLRAAR--RVLGLDP 688

Query: 352 ---------SNEFTLASCLNGCSPVATLANGRLL 376
                    SN F     L+    +A LA  R +
Sbjct: 689 KNASPYVLLSNMFAAIGMLDAVKSLAKLAGERAM 722



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 149/304 (49%), Gaps = 15/304 (4%)

Query: 268 DVGFGKQLHAHTIKHS--LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
           DV   K + AH I HS    G+ ++   +V+ Y K GC++DA + F S+ + +++++T +
Sbjct: 95  DVTALKTIQAH-ISHSKRFSGDRLLLNCVVEAYGKCGCVKDARLVFSSIRHPNVYSWTIL 153

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH 385
           + +YAQ G  +  L+  R+M L G+  N  TLA+ +   S +      R +H+ A  T  
Sbjct: 154 LAAYAQNGHHKTVLELLRQMDLLGVWPNAVTLATVIGAVSELGDWDEARKIHARAAATCQ 213

Query: 386 L-LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
           L  D+ + TAL+ MYAKCG I  AE VF  +  +D A  N MI  Y++ G    A+  F 
Sbjct: 214 LTYDVVLVTALIDMYAKCGDIFHAEVVFDQARNKDLACCNAMISAYIQLGYTVDAVSTFN 273

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGK-KHFSSIKKIYGITPTIKHFACMIDILGR 503
            +   G  P+++T+ ++  AC+  G+  + +  H   I  +  + P +     ++ +  R
Sbjct: 274 RIQPSGLQPNQVTYALLFRACATNGVYSDARVAHMCFI--LSKLRPDVVVNTALVSMYSR 331

Query: 504 AGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFP 563
            G   +    + +     N + W  ++   +  G         ++ L+L   ME+  V P
Sbjct: 332 CGSLEDARR-VFDRMPGKNVVTWNVMIAGYAQEGY-------TDEALQLYVSMEAAGVEP 383

Query: 564 SDIS 567
            +I+
Sbjct: 384 DEIT 387


>gi|297742226|emb|CBI34375.3| unnamed protein product [Vitis vinifera]
          Length = 814

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 184/606 (30%), Positives = 334/606 (55%), Gaps = 18/606 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK--KFSKFSLSTVLKGF 61
           A++ FK     + V W A++ G+  +G+ +K   +F  M+ +    + ++FSL++VL   
Sbjct: 171 AEKCFKEFYIADSVVWTAMVCGFVWNGEFEKGREVFVEMRGLGLGLELNEFSLTSVLGAL 230

Query: 62  ANSGYIKAGQVVHAMAIRLG--CALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           ++   ++ G+ V  +++++G  C     L+ +L++MYS+CG   +A+K+F  + +PDVV+
Sbjct: 231 SD---VREGEQVFGLSVKMGLLCGCSIHLNNALMNMYSRCGSKSDAIKMFDEMTEPDVVS 287

Query: 120 W----GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH 175
           W    GA    +       EA ++F L+   +++ N+++L +++ A  E    + G  I 
Sbjct: 288 WTERIGAAYDAI-------EAFELFRLVLSGNMEVNEYMLINVLSAMREPKLLKSGRQIQ 340

Query: 176 AVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD 235
            +  K G+     V NAL+ MY + G +     +F+ +   DSVSWN+L + + +     
Sbjct: 341 GLCQKAGYLLVASVNNALIFMYGKCGEMVAARHIFDEMLCGDSVSWNSLIAGYAENGLMK 400

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
           Q L++F QM     +PN  T   IL+  ++ +      Q+H++ +K     +  + + L+
Sbjct: 401 QALKVFSQMRDYLLQPNKYTLASILEVAANSNFPEQAMQIHSYIVKLGFIVDDSMLSCLI 460

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
             Y K   + ++   +  ++  ++    A+  +   AG    ALK F+       + +  
Sbjct: 461 TAYGKCNMICESKRVYSDISQINVLHLNAMAATLVHAGCHADALKLFQTGWRLHQEVDCI 520

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
           TL+  L  C  +  L  GR +HS+A+K+G   D FV +A++ +Y KCG++D+A   F   
Sbjct: 521 TLSIVLKACGALTDLEYGRNIHSMALKSGMSQDNFVESAVIDVYCKCGTVDEAAKTFMNV 580

Query: 416 ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           +  +  +WN M+ GY +HG   +  E F  ML+ G  PDEIT++ VL++C H GL+ E  
Sbjct: 581 SKNNLVAWNAMVMGYAQHGCYHEVFELFNKMLELGIQPDEITYLGVLNSCCHAGLVNEAH 640

Query: 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
            + SS+ +++G+ P ++H+ACMID+ GR G   + +  I +  + P+A +W+ LL  C+ 
Sbjct: 641 TYLSSMLELHGVVPCLEHYACMIDLFGRVGLLEDAKRTIDQMPIMPDAQIWQILLSGCNI 700

Query: 536 HGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCS 595
           HGN++L E  A+KL+EL+P+ +S YV  S++ A+ GRWN    +R ++  + I KEP  S
Sbjct: 701 HGNVDLGEVAAKKLIELQPENDSAYVLLSNLYASAGRWNAVGKLRRVMKKKIICKEPGSS 760

Query: 596 WIEVDG 601
           WI+V G
Sbjct: 761 WIQVRG 766



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 148/555 (26%), Positives = 251/555 (45%), Gaps = 20/555 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R     P  + VSWN+L++GYA       V  LF  ++       +FSLS+++KG   
Sbjct: 74  ARRFLLDTPYPDTVSWNSLISGYARFRQPGPVFDLFNGLRRSGLSPDEFSLSSLVKG--- 130

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G ++  +V H + +++G  L+ F+   L+D Y+K G  D+A K F      D V W A+
Sbjct: 131 CGVLEQNEVAHGVCLKMGL-LNGFVVSGLLDGYAKLGDVDSAEKCFKEFYIADSVVWTAM 189

Query: 124 ITCLDQQGCCQEAAKIFNLMR--ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           +      G  ++  ++F  MR     ++ N+F LTS++ A +   D R GE +  +  K 
Sbjct: 190 VCGFVWNGEFEKGREVFVEMRGLGLGLELNEFSLTSVLGALS---DVREGEQVFGLSVKM 246

Query: 182 GF--ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           G        + NAL++MY   G  S   ++F+ +   D VSW     R        +   
Sbjct: 247 GLLCGCSIHLNNALMNMYSRCGSKSDAIKMFDEMTEPDVVSWT---ERIGAAYDAIEAFE 303

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F  +L    + N    I +L A      +  G+Q+     K        V  +L+ MY 
Sbjct: 304 LFRLVLSGNMEVNEYMLINVLSAMREPKLLKSGRQIQGLCQKAGYLLVASVNNALIFMYG 363

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G +  A   FD +   D  ++ ++I  YA+ G  + ALK F +MR   ++ N++TLAS
Sbjct: 364 KCGEMVAARHIFDEMLCGDSVSWNSLIAGYAENGLMKQALKVFSQMRDYLLQPNKYTLAS 423

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L   +          +HS  VK G ++D  + + L+  Y KC  I +++ V+   +  +
Sbjct: 424 ILEVAANSNFPEQAMQIHSYIVKLGFIVDDSMLSCLITAYGKCNMICESKRVYSDISQIN 483

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HF 478
               N M    V  G    AL+ F+         D IT  +VL AC  +  +E G+  H 
Sbjct: 484 VLHLNAMAATLVHAGCHADALKLFQTGWRLHQEVDCITLSIVLKACGALTDLEYGRNIHS 543

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTE-IENFITETKLTPNALVWENLLGACSWHG 537
            ++K   G++      + +ID+  + G   E  + F+  +K   N + W  ++   + HG
Sbjct: 544 MALKS--GMSQDNFVESAVIDVYCKCGTVDEAAKTFMNVSK--NNLVAWNAMVMGYAQHG 599

Query: 538 NIELDEKDAEKLLEL 552
                 +   K+LEL
Sbjct: 600 CYHEVFELFNKMLEL 614



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 127/449 (28%), Positives = 212/449 (47%), Gaps = 22/449 (4%)

Query: 74  HAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCC 133
           +A+ ++ G ALD FLS  +V+ ++  G    A +       PD V+W ++I+   +    
Sbjct: 43  YALFLKSGFALDAFLSSFIVNRFAISGDFARARRFLLDTPYPDTVSWNSLISGYARFRQP 102

Query: 134 QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNAL 193
                +FN +R S + P++F L+SLV+     G     E  H V  K G  +  +V + L
Sbjct: 103 GPVFDLFNGLRRSGLSPDEFSLSSLVKG---CGVLEQNEVAHGVCLKMGLLNGFVV-SGL 158

Query: 194 VSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM--LLKGFKP 251
           +  Y + G V    + F+     DSV W A+   F      ++G  +F +M  L  G + 
Sbjct: 159 LDGYAKLGDVDSAEKCFKEFYIADSVVWTAMVCGFVWNGEFEKGREVFVEMRGLGLGLEL 218

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLD-GNHV-VGTSLVDMYDKSGCLEDAGV 309
           N  +   +L A   LSDV  G+Q+   ++K  L  G  + +  +L++MY + G   DA  
Sbjct: 219 NEFSLTSVLGA---LSDVREGEQVFGLSVKMGLLCGCSIHLNNALMNMYSRCGSKSDAIK 275

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369
            FD +   D+ ++T  I +   A E   A + FR +    ++ NE+ L + L+       
Sbjct: 276 MFDEMTEPDVVSWTERIGAAYDAIE---AFELFRLVLSGNMEVNEYMLINVLSAMREPKL 332

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           L +GR +  +  K G+LL   V+ AL+ MY KCG +  A  +F      D+ SWN +I G
Sbjct: 333 LKSGRQIQGLCQKAGYLLVASVNNALIFMYGKCGEMVAARHIFDEMLCGDSVSWNSLIAG 392

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITP 489
           Y ++GL ++AL+ F  M D    P++ T   +L   ++    E+  +  S I K+ G   
Sbjct: 393 YAENGLMKQALKVFSQMRDYLLQPNKYTLASILEVAANSNFPEQAMQIHSYIVKL-GFIV 451

Query: 490 TIKHFACMIDILGRAGKFTEIENFITETK 518
                +C+I   G+        N I E+K
Sbjct: 452 DDSMLSCLITAYGKC-------NMICESK 473



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 170/384 (44%), Gaps = 18/384 (4%)

Query: 159 VRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDS 218
           +RA+         +  +A+  K GF  D  + + +V+ +  +G  +   R      + D+
Sbjct: 27  LRASASLLHPPLTDQSYALFLKSGFALDAFLSSFIVNRFAISGDFARARRFLLDTPYPDT 86

Query: 219 VSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAH 278
           VSWN+L S +  +  P     +F  +   G  P+  +   ++K C  L      +  H  
Sbjct: 87  VSWNSLISGYARFRQPGPVFDLFNGLRRSGLSPDEFSLSSLVKGCGVLEQ---NEVAHGV 143

Query: 279 TIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMA 338
            +K  L    VV + L+D Y K G ++ A   F      D   +TA++  +   GE E  
Sbjct: 144 CLKMGLLNGFVV-SGLLDGYAKLGDVDSAEKCFKEFYIADSVVWTAMVCGFVWNGEFEKG 202

Query: 339 LKCFRKMR--LEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL--LDMFVSTA 394
            + F +MR    G++ NEF+L S L   S V     G  +  ++VK G L    + ++ A
Sbjct: 203 REVFVEMRGLGLGLELNEFSLTSVLGALSDV---REGEQVFGLSVKMGLLCGCSIHLNNA 259

Query: 395 LVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD 454
           L+ MY++CGS  DA  +F      D  SW   IG         +A E FR++L      +
Sbjct: 260 LMNMYSRCGSKSDAIKMFDEMTEPDVVSWTERIGAAYD---AIEAFELFRLVLSGNMEVN 316

Query: 455 EITFVVVLSACSHMGLIEEGKKHFSSIKKI-YGITPTIKHFACMIDILGRAGKFTEIENF 513
           E   + VLSA     L++ G++     +K  Y +  ++ +   +I + G+ G+     + 
Sbjct: 317 EYMLINVLSAMREPKLLKSGRQIQGLCQKAGYLLVASVNN--ALIFMYGKCGEMVAARHI 374

Query: 514 ITETKLTPNALVWENLLGACSWHG 537
             E  L  +++ W +L+   + +G
Sbjct: 375 FDEM-LCGDSVSWNSLIAGYAENG 397



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 77/183 (42%), Gaps = 14/183 (7%)

Query: 366 PVATLANGRLLH--------SIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           P A  A+  LLH        ++ +K+G  LD F+S+ +V  +A  G    A      +  
Sbjct: 24  PQALRASASLLHPPLTDQSYALFLKSGFALDAFLSSFIVNRFAISGDFARARRFLLDTPY 83

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
            DT SWN +I GY +        + F  +   G  PDE +   ++  C   G++E+ +  
Sbjct: 84  PDTVSWNSLISGYARFRQPGPVFDLFNGLRRSGLSPDEFSLSSLVKGC---GVLEQNEVA 140

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
                K+  +   +   + ++D   + G     E    E  +  +++VW  ++    W+G
Sbjct: 141 HGVCLKMGLLNGFV--VSGLLDGYAKLGDVDSAEKCFKEFYIA-DSVVWTAMVCGFVWNG 197

Query: 538 NIE 540
             E
Sbjct: 198 EFE 200


>gi|449503129|ref|XP_004161848.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 769

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 181/534 (33%), Positives = 291/534 (54%), Gaps = 8/534 (1%)

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127
           + G  +HA  ++       F    +++ Y KCG     L++F  + + +VV+W AII   
Sbjct: 232 RHGSAIHAKFLKGFLPFSLFFHNHVLNFYVKCGRLSYGLQLFDEMPERNVVSWSAIIAGF 291

Query: 128 DQQGCCQEAAKIFNLMR-ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
            Q G   EA  +F  M  + ++ PN+F L S + A + T    C   I+A I + G+ S+
Sbjct: 292 VQHGRPNEALSLFGRMHCDGTIMPNEFTLVSALHACSLTQRLICSYQIYAFIVRLGYGSN 351

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD---YESPDQGLRIFYQ 243
             + NA ++  + + ++     VFE+   +D+VSWNA+ + +     +E P    + + +
Sbjct: 352 VFLMNAFLTALIRHEKLLEALEVFESCLSKDTVSWNAMMAGYLQLAYFELP----KFWRR 407

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M L+  KP+  TF  IL   ++LS+   G Q+H   +K     +  VG SL DMY K+  
Sbjct: 408 MNLESVKPDNFTFASILTGLAALSEFRLGLQVHGQLVKSGYGNDICVGNSLCDMYVKNQK 467

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L D   AFD +++ D+ ++T +     Q GE   ALK   +M+  G++ N+FTLA+ LN 
Sbjct: 468 LLDGFKAFDEMSSSDVCSWTQMAAGCLQCGEPMKALKVIYEMKNVGVRLNKFTLATALNS 527

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +A++  G+  H + +K G  +D+ V  AL+ MYAKCG +  A  VF+    R   SW
Sbjct: 528 CANLASIEEGKKFHGLRIKLGTDVDVCVDNALLDMYAKCGCMTSANVVFRSMDERSVVSW 587

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
             MI G+  +G  ++AL+ F  M      P+ ITF+ VL+ACS  G I+E  K+FSS+  
Sbjct: 588 TTMIMGFAHNGQTKEALQIFDEMRKGEAEPNHITFICVLNACSQGGFIDEAWKYFSSMSA 647

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            +GI P+  H+ CM+++LGRAG   E E+ I +    P +LVW+ LLGAC  HG+IE  +
Sbjct: 648 DHGIAPSEDHYVCMVNLLGRAGCIKEAEDLILQMPFQPGSLVWQTLLGACLVHGDIETGK 707

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           + AE  L L+    S Y+  S++ A    W+    +R L+ ++ +KK P  SW+
Sbjct: 708 RAAEHALNLDRNDPSTYILLSNMFAGGDNWDSVGILRELMETRDVKKVPGSSWM 761



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 120/448 (26%), Positives = 210/448 (46%), Gaps = 19/448 (4%)

Query: 6   RVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMK-DMEKKFSKFSLSTVLKGFANS 64
           ++F  MPE NVVSW+A++ G+ + G   + + LF  M  D     ++F+L + L   + +
Sbjct: 271 QLFDEMPERNVVSWSAIIAGFVQHGRPNEALSLFGRMHCDGTIMPNEFTLVSALHACSLT 330

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
             +     ++A  +RLG   + FL  + +    +      AL+VF      D V+W A++
Sbjct: 331 QRLICSYQIYAFIVRLGYGSNVFLMNAFLTALIRHEKLLEALEVFESCLSKDTVSWNAMM 390

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
               Q     E  K +  M   SVKP+ F   S++       + R G  +H  + K G+ 
Sbjct: 391 AGYLQLAYF-ELPKFWRRMNLESVKPDNFTFASILTGLAALSEFRLGLQVHGQLVKSGYG 449

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
           +D  VGN+L  MY++N ++  G + F+ ++  D  SW  + +       P + L++ Y+M
Sbjct: 450 NDICVGNSLCDMYVKNQKLLDGFKAFDEMSSSDVCSWTQMAAGCLQCGEPMKALKVIYEM 509

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
              G + N  T    L +C++L+ +  GK+ H   IK   D +  V  +L+DMY K GC+
Sbjct: 510 KNVGVRLNKFTLATALNSCANLASIEEGKKFHGLRIKLGTDVDVCVDNALLDMYAKCGCM 569

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
             A V F S+  + + ++T +I  +A  G+ + AL+ F +MR    + N  T    LN C
Sbjct: 570 TSANVVFRSMDERSVVSWTTMIMGFAHNGQTKEALQIFDEMRKGEAEPNHITFICVLNAC 629

Query: 365 SPVATL-------ANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           S    +       ++    H IA    H +       +V +  + G I +AE +      
Sbjct: 630 SQGGFIDEAWKYFSSMSADHGIAPSEDHYV------CMVNLLGRAGCIKEAEDLILQMPF 683

Query: 418 RD-TASWNMMIGGYVKHG---LGEKALE 441
           +  +  W  ++G  + HG    G++A E
Sbjct: 684 QPGSLVWQTLLGACLVHGDIETGKRAAE 711



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 142/311 (45%), Gaps = 14/311 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLKGFA 62
           A  VF+S    + VSWNA++ GY +    +  +  F    ++E  K   F+ +++L G A
Sbjct: 371 ALEVFESCLSKDTVSWNAMMAGYLQLAYFE--LPKFWRRMNLESVKPDNFTFASILTGLA 428

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
                + G  VH   ++ G   D  +  SL DMY K     +  K F  +   DV +W  
Sbjct: 429 ALSEFRLGLQVHGQLVKSGYGNDICVGNSLCDMYVKNQKLLDGFKAFDEMSSSDVCSWTQ 488

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +     Q G   +A K+   M+   V+ N+F L + + +         G+  H +  K G
Sbjct: 489 MAAGCLQCGEPMKALKVIYEMKNVGVRLNKFTLATALNSCANLASIEEGKKFHGLRIKLG 548

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            + D  V NAL+ MY + G ++  + VF ++  +  VSW  +   F       + L+IF 
Sbjct: 549 TDVDVCVDNALLDMYAKCGCMTSANVVFRSMDERSVVSWTTMIMGFAHNGQTKEALQIFD 608

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS------LVD 296
           +M     +PN  TFI +L ACS     GF  +  A     S+  +H +  S      +V+
Sbjct: 609 EMRKGEAEPNHITFICVLNACSQ---GGFIDE--AWKYFSSMSADHGIAPSEDHYVCMVN 663

Query: 297 MYDKSGCLEDA 307
           +  ++GC+++A
Sbjct: 664 LLGRAGCIKEA 674



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 80/173 (46%), Gaps = 9/173 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A  VF+SM E +VVSW  ++ G+A +G  ++ + +F  M+  E + +  +   VL  
Sbjct: 569 MTSANVVFRSMDERSVVSWTTMIMGFAHNGQTKEALQIFDEMRKGEAEPNHITFICVLNA 628

Query: 61  FANSGYI-KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            +  G+I +A +   +M+   G A  +     +V++  + G    A  +  ++   P  +
Sbjct: 629 CSQGGFIDEAWKYFSSMSADHGIAPSEDHYVCMVNLLGRAGCIKEAEDLILQMPFQPGSL 688

Query: 119 AWGAII-TCL---DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD 167
            W  ++  CL   D +   + A    NL R     P+ ++L S + A  +  D
Sbjct: 689 VWQTLLGACLVHGDIETGKRAAEHALNLDRND---PSTYILLSNMFAGGDNWD 738


>gi|222622248|gb|EEE56380.1| hypothetical protein OsJ_05522 [Oryza sativa Japonica Group]
          Length = 518

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 170/504 (33%), Positives = 276/504 (54%), Gaps = 35/504 (6%)

Query: 95  MYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFV 154
           MY+KC   D A+KVF  +    +V+W  +IT   Q+G C +A ++ +LM+E+  +PN+  
Sbjct: 1   MYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVT 60

Query: 155 LTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA 214
            ++L+ +  +  D                                   V     +F+ I+
Sbjct: 61  YSNLLASCIKARD-----------------------------------VHSARAMFDKIS 85

Query: 215 HQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ 274
                +WN L S +   E     + +F +M  +  +P+  T  VIL +CS L  + FG+Q
Sbjct: 86  RPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQ 145

Query: 275 LHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGE 334
           +H+ +++  L  +  V + LVDMY K G +  A   F+ +  +D+  + +II+       
Sbjct: 146 VHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSL 205

Query: 335 AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA 394
            + A   F++MR  GI   E + AS +N CS ++++ +GR +H+  +K G+  +++V +A
Sbjct: 206 NKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSA 265

Query: 395 LVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD 454
           L+ MYAKCG++DDA   F    +++  +WN MI GY ++GLG+KA+E F  ML     PD
Sbjct: 266 LIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPD 325

Query: 455 EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFI 514
            +TF+ VL+ CSH GL+++    F+S++  YGI P  +H+ C+ID LGRAG+F E+E  I
Sbjct: 326 AVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALI 385

Query: 515 TETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWN 574
            +     + ++WE LL AC  H N EL +  AE L  ++PK  S YV  S+I A+ GR  
Sbjct: 386 HKMPCKDDPIIWEVLLAACVVHHNAELGKCAAEHLFRIDPKNPSPYVLLSNIYASLGRHG 445

Query: 575 DFSGVRALLSSQGIKKEPSCSWIE 598
           D S VRAL+S++G+ K    SWI+
Sbjct: 446 DASAVRALMSNRGVVKGRGYSWID 469



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 108/439 (24%), Positives = 199/439 (45%), Gaps = 37/439 (8%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A +VF+S+P + +VSWN L+ G+ + G   K + +   M++   + ++ + S +L  
Sbjct: 8   MDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLL-- 65

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              +  IKA  V  A A+                              F +I  P V  W
Sbjct: 66  ---ASCIKARDVHSARAM------------------------------FDKISRPSVTTW 92

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +++   Q+   Q+  ++F  M+  +V+P++  L  ++ + ++ G    G  +H+   +
Sbjct: 93  NTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVR 152

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +   +D  V + LV MY + G++     +F  +  +D V WN++ S    +    +    
Sbjct: 153 FLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDF 212

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QM   G  P   ++  ++ +CS LS +  G+Q+HA  +K   D N  VG++L+DMY K
Sbjct: 213 FKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAK 272

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G ++DA + FD++  K++ A+  +I  YAQ G  + A++ F  M     K +  T  + 
Sbjct: 273 CGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAV 332

Query: 361 LNGCSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA-VFKGSALR 418
           L GCS    +       +S+    G +      T L+    + G   + EA + K     
Sbjct: 333 LTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKD 392

Query: 419 DTASWNMMIGGYVKHGLGE 437
           D   W +++   V H   E
Sbjct: 393 DPIIWEVLLAACVVHHNAE 411



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 7/167 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A+  F +M   N+V+WN +++GYA++G G K + LF  M   E+K    +   VL G
Sbjct: 276 MDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTG 335

Query: 61  FANSGYI-KAGQVVHAMAIRLG-CALDKFLSCSLVDMYSKCGLADNALKVFYRI--KDPD 116
            ++SG + KA    ++M    G   L +  +C L+D   + G       + +++  KD D
Sbjct: 336 CSHSGLVDKAMAFFNSMENSYGIIPLAEHYTC-LIDALGRAGRFVEVEALIHKMPCKD-D 393

Query: 117 VVAWGAII-TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRAT 162
            + W  ++  C+             +L R     P+ +VL S + A+
Sbjct: 394 PIIWEVLLAACVVHHNAELGKCAAEHLFRIDPKNPSPYVLLSNIYAS 440


>gi|2828294|emb|CAA16708.1| putatative protein [Arabidopsis thaliana]
 gi|7268714|emb|CAB78921.1| putatative protein [Arabidopsis thaliana]
          Length = 1260

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 188/602 (31%), Positives = 318/602 (52%), Gaps = 3/602 (0%)

Query: 3    LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
            + +R+++     +V +WN  +       D  + + LF  MK    + + F+   V K  A
Sbjct: 610  IHRRLYRISGLSSVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACA 669

Query: 63   NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
                +   ++VHA  I+     D F+  + VDM+ KC   D A KVF R+ + D   W A
Sbjct: 670  RLADVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNA 729

Query: 123  IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
            +++   Q G   +A  +F  MR + + P+   + +L+++ +     +  E++HAV  + G
Sbjct: 730  MLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLG 789

Query: 183  FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDS--VSWNALFSRFQDYESPDQGLRI 240
             +    V N  +S Y + G +     VFEAI   D   VSWN++F  +  +        +
Sbjct: 790  VDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGL 849

Query: 241  FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
            +  ML + FKP++ TFI +  +C +   +  G+ +H+H I    D +     + + MY K
Sbjct: 850  YCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSK 909

Query: 301  SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            S     A + FD + ++   ++T +I+ YA+ G+ + AL  F  M   G K +  TL S 
Sbjct: 910  SEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSL 969

Query: 361  LNGCSPVATLANGRLLHSIAVKTGHLLD-MFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            ++GC    +L  G+ + + A   G   D + +  AL+ MY+KCGSI +A  +F  +  + 
Sbjct: 970  ISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKT 1029

Query: 420  TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
              +W  MI GY  +G+  +AL+ F  M+D  Y P+ ITF+ VL AC+H G +E+G ++F 
Sbjct: 1030 VVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFH 1089

Query: 480  SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
             +K++Y I+P + H++CM+D+LGR GK  E    I      P+A +W  LL AC  H N+
Sbjct: 1090 IMKQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNV 1149

Query: 540  ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            ++ E+ AE L  LEP+M + YV  ++I A  G W+ F+ +R+++  + IKK P  S I+V
Sbjct: 1150 KIAEQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPGESVIQV 1209

Query: 600  DG 601
            +G
Sbjct: 1210 NG 1211



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 116/453 (25%), Positives = 207/453 (45%), Gaps = 12/453 (2%)

Query: 1    MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
            ++ A +VF+ MPE +  +WNA+L+G+ +SG   K   LF  M+  E      ++ T+++ 
Sbjct: 709  VDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQS 768

Query: 61   FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK--DPDVV 118
             +    +K  + +HA+ IRLG  +   ++ + +  Y KCG  D+A  VF  I   D  VV
Sbjct: 769  ASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVV 828

Query: 119  AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            +W ++       G   +A  ++ LM     KP+     +L  +         G  IH+  
Sbjct: 829  SWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHA 888

Query: 179  CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
               G + D    N  +SMY ++        +F+ +  +  VSW  + S + +    D+ L
Sbjct: 889  IHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEAL 948

Query: 239  RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGTSLVDM 297
             +F+ M+  G KP++ T + ++  C     +  GK + A    +    ++V +  +L+DM
Sbjct: 949  ALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDM 1008

Query: 298  YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
            Y K G + +A   FD+   K +  +T +I  YA  G    ALK F KM     K N  T 
Sbjct: 1009 YSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITF 1068

Query: 358  ASCLNGCSPVATLANGRLLHSIAVKTGHL---LDMFVSTALVAMYAKCGSIDDA-EAVFK 413
             + L  C+   +L  G     I  +  ++   LD +  + +V +  + G +++A E +  
Sbjct: 1069 LAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHY--SCMVDLLGRKGKLEEALELIRN 1126

Query: 414  GSALRDTASWNMMIGGYVKH---GLGEKALEAF 443
             SA  D   W  ++     H    + E+A E+ 
Sbjct: 1127 MSAKPDAGIWGALLNACKIHRNVKIAEQAAESL 1159


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 198/641 (30%), Positives = 309/641 (48%), Gaps = 111/641 (17%)

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
            + VH   I  G  L   +   L+D+Y K      A K+F  I  PDV+A   +IT    
Sbjct: 32  ARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTLITAYSA 91

Query: 130 QGCCQEAAKIFN---------------------------------LMRESSVKPNQFVLT 156
            G  + A +IFN                                  MR ++ +P+ F   
Sbjct: 92  LGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFA 151

Query: 157 SLVRATTET--GDQRCGESIHAVICKYGFESDTLVGNALVSMYME--------------- 199
           S++ A+T     +++CG+ +H  + K+G E    V NAL+S+Y++               
Sbjct: 152 SVLSASTLIFYDERQCGQ-MHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMAS 210

Query: 200 -------------------------NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
                                    NG ++    + + +  Q  ++WNA+ S +  +   
Sbjct: 211 ARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLF 270

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH----VV 290
           +  L +F +M L G + +  T+  ++ AC+       GKQ+HA+ +K+ L+ +      V
Sbjct: 271 EDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSV 330

Query: 291 GTSLVDMYDK-------------------------------SGCLEDAGVAFDSLANKDL 319
           G +L+ +Y K                               +G +E+A   F  +  K+L
Sbjct: 331 GNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNL 390

Query: 320 FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSI 379
             +T +I+  AQ G  E ALK F +M+L+G + N++  A  +  CS +  L NGR LH+ 
Sbjct: 391 LTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQ 450

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
            V  GH   + V  A++ MYA+CG ++ A  +F      D  SWN MI    +HG G KA
Sbjct: 451 IVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKA 510

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMID 499
           +E +  ML EG +PD  TF+ VLSACSH GL+EEG ++F+S+ + YGI P   H+A MID
Sbjct: 511 IELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMID 570

Query: 500 ILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESN 559
           +  RAGKF++ +N I        A +WE LL  C  HGN++L  + AEKL +L P+ +  
Sbjct: 571 LFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDGT 630

Query: 560 YVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           YV  S++ A+ GRWND +  R L+  +G+KKEP+CSW EV+
Sbjct: 631 YVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSWTEVE 671



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 108/296 (36%), Gaps = 78/296 (26%)

Query: 264 SSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYT 323
            +LS     + +H H I         +   L+D+Y KS     A   FD +   D+ A T
Sbjct: 24  QNLSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIART 83

Query: 324 AIITSYAQAGEAEM---------------------------------ALKCFRKMRLEGI 350
            +IT+Y+  G  +M                                 A++ FR MR    
Sbjct: 84  TLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANF 143

Query: 351 KSNEFTLASCLNGCSPVATLANGR---LLHSIAVKTGHLLDMFVSTALVAMYAKC----- 402
           + ++FT AS L+  + +    + R    +H   VK G  +   V  AL+++Y KC     
Sbjct: 144 QPDDFTFASVLSASTLI--FYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPL 201

Query: 403 -----------------------------------GSIDDAEAVFKGSALRDTASWNMMI 427
                                              G +  A  +      +   +WN MI
Sbjct: 202 VSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMI 261

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
            GY+ HGL E AL  FR M   G   DE T+  V+SAC+  G    GK+  + I K
Sbjct: 262 SGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILK 317


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 169/462 (36%), Positives = 271/462 (58%), Gaps = 2/462 (0%)

Query: 139 IFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYM 198
           + +L+   S++P + + + ++   T     + G +IHA I    FE D ++ N +++MY 
Sbjct: 92  VLDLINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYA 151

Query: 199 ENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIV 258
           + G +     +F+ +  +D VSW  L S +       + L +F +ML  GF+PN  T   
Sbjct: 152 KCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSS 211

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKD 318
           +LKA  +      G+QLHA ++K+  D N  VG+SL+DMY +   + +A V F+SLA K+
Sbjct: 212 LLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKN 271

Query: 319 LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHS 378
           + ++ A+I  +A+ GE E  ++ F +M  +G +   FT +S L  C+   +L  G+ +H+
Sbjct: 272 VVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHA 330

Query: 379 IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEK 438
             +K+G     ++   L+ MYAK GSI DA+ VF+    +D  SWN +I GY +HGLG +
Sbjct: 331 HVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAE 390

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMI 498
           AL+ F  ML     P+EITF+ VL+ACSH GL++EG+ +F  +KK + I   + H   ++
Sbjct: 391 ALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKK-HKIEAQVAHHVTVV 449

Query: 499 DILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMES 558
           D+LGRAG+  E   FI E  + P A VW  LLGAC  H N++L    AE++ EL+P    
Sbjct: 450 DLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHDSG 509

Query: 559 NYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
            +V  S+I A+ GR +D + VR ++   G+KKEP+CSW+E++
Sbjct: 510 PHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIE 551



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 112/374 (29%), Positives = 187/374 (50%), Gaps = 14/374 (3%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +K G+ +HA         D  L   +++MY+KCG  + A  +F ++   D+V+W  +I+ 
Sbjct: 121 LKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISG 180

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             Q G   EA  +F  M     +PN+F L+SL++A+        G  +HA   KYG++ +
Sbjct: 181 YSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMN 240

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             VG++L+ MY     +     +F ++A ++ VSWNAL +        +  +R+F QML 
Sbjct: 241 VHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLR 300

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           +GF+P   T+  +L AC+S   +  GK +HAH IK        +G +L+DMY KSG ++D
Sbjct: 301 QGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKD 359

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A   F  L  +D+ ++ +II+ YAQ G    AL+ F +M    ++ NE T  S L  CS 
Sbjct: 360 AKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSH 419

Query: 367 VATLANGRLL------HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
              L  G+        H I  +  H         +V +  + G +++A    +   ++ T
Sbjct: 420 SGLLDEGQYYFELMKKHKIEAQVAH------HVTVVDLLGRAGRLNEANKFIEEMPIKPT 473

Query: 421 AS-WNMMIGGYVKH 433
           A+ W  ++G    H
Sbjct: 474 AAVWGALLGACRMH 487



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 164/317 (51%), Gaps = 1/317 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ +F  MP  ++VSW  L++GY++SG   + + LF  M  +  + ++F+LS++LK 
Sbjct: 156 LEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKA 215

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                    G+ +HA +++ G  ++  +  SL+DMY++      A  +F  +   +VV+W
Sbjct: 216 SGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSW 275

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    ++G  +   ++F  M     +P  F  +S++ A   +G    G+ +HA + K
Sbjct: 276 NALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIK 334

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G +    +GN L+ MY ++G +    +VF  +  QD VSWN++ S +  +    + L++
Sbjct: 335 SGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQL 394

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QML    +PN  TF+ +L ACS    +  G+       KH ++       ++VD+  +
Sbjct: 395 FEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGR 454

Query: 301 SGCLEDAGVAFDSLANK 317
           +G L +A    + +  K
Sbjct: 455 AGRLNEANKFIEEMPIK 471


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 175/548 (31%), Positives = 298/548 (54%), Gaps = 1/548 (0%)

Query: 53  SLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI 112
           + +++LK  A    +  G+ VHA     G + +   + +L +MY+KC    +A +VF R+
Sbjct: 227 TFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRM 286

Query: 113 KDPDVVAWGAIITCLDQQGCCQEA-AKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG 171
              D VAW A++    + G  + A   +  +  E   +P+   L S++ A  +       
Sbjct: 287 PARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGAC 346

Query: 172 ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY 231
             +HA   + GF+    V  A++ +Y + G V    +VF+ +  ++SVSWNA+   + + 
Sbjct: 347 REVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAEN 406

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
               + L +F +M+ +G      + +  L AC  L  +  G+++H   ++  L+ N  V 
Sbjct: 407 GDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVM 466

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
            +L+ MY K    + A   FD L  K   ++ A+I    Q G +E A++ F +M+LE +K
Sbjct: 467 NALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVK 526

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            + FTL S +   + ++     R +H  +++     D++V TAL+ MYAKCG +  A ++
Sbjct: 527 PDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSL 586

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F  +  R   +WN MI GY  HG G+ A+E F  M   G VP+E TF+ VLSACSH GL+
Sbjct: 587 FNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLV 646

Query: 472 EEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLG 531
           +EG+++FSS+K+ YG+ P ++H+  M+D+LGRAGK  E  +FI +  + P   V+  +LG
Sbjct: 647 DEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLG 706

Query: 532 ACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
           AC  H N+EL E+ A+++ ELEP+    +V  ++I A    W D + VR  +  +G++K 
Sbjct: 707 ACKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYANASLWKDVARVRTAMEKKGLQKT 766

Query: 592 PSCSWIEV 599
           P  S +++
Sbjct: 767 PGWSIVQL 774



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 131/463 (28%), Positives = 235/463 (50%), Gaps = 5/463 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDME-KKFSKFSLSTVLKGFA 62
           A+RVF  MP  + V+WNAL+ GYA +G  +  + +   M++ + ++    +L +VL   A
Sbjct: 279 ARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACA 338

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           ++  + A + VHA A+R G      +S +++D+Y KCG  D+A KVF  ++D + V+W A
Sbjct: 339 DAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNA 398

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I    + G   EA  +F  M    V      + + + A  E G    G  +H ++ + G
Sbjct: 399 MIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIG 458

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            ES+  V NAL++MY +  R    ++VF+ + ++  VSWNA+        S +  +R+F 
Sbjct: 459 LESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFS 518

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M L+  KP+  T + I+ A + +SD    + +H ++I+  LD +  V T+L+DMY K G
Sbjct: 519 RMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCG 578

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            +  A   F+S  ++ +  + A+I  Y   G  ++A++ F +M+  G   NE T  S L+
Sbjct: 579 RVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLS 638

Query: 363 GCSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
            CS    +  G+    S+    G    M     +V +  + G + +A +  +   +    
Sbjct: 639 ACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGI 698

Query: 422 S-WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           S +  M+G    H   E A E+ + + +    P+E  + V+L+
Sbjct: 699 SVYGAMLGACKLHKNVELAEESAQRIFE--LEPEEGVYHVLLA 739



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 168/337 (49%), Gaps = 17/337 (5%)

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           G  P + TF  +LK C++ +D+  G+ +HA      L    +  T+L +MY K     DA
Sbjct: 220 GSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDA 279

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE-GIKSNEFTLASCLNGCSP 366
              FD +  +D  A+ A++  YA+ G AE A+    +M+ E G + +  TL S L  C+ 
Sbjct: 280 RRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACAD 339

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
              L   R +H+ AV+ G    + VSTA++ +Y KCG++D A  VF G   R++ SWN M
Sbjct: 340 AQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAM 399

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           I GY ++G   +AL  F+ M+ EG    +++ +  L AC  +G ++EG++    + +I G
Sbjct: 400 IKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRI-G 458

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDA 546
           +   +     +I +  +  K T++   + +       + W  ++  C+ +G+ E    DA
Sbjct: 459 LESNVNVMNALITMYCKC-KRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSE----DA 513

Query: 547 EKL---LELEPKMESNYVFPSDISA-------TQGRW 573
            +L   ++LE     ++   S I A        Q RW
Sbjct: 514 VRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARW 550


>gi|356514095|ref|XP_003525742.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 700

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 186/601 (30%), Positives = 311/601 (51%), Gaps = 5/601 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKD---MEKKFSKFSLSTVLKG 60
           A ++F+  P   V  WNALL  Y   G   + + LF  M      E++   +++S  LK 
Sbjct: 55  AHKLFEETPCKTVYLWNALLRSYFLEGKWVETLSLFHQMNADAITEERPDNYTVSIALKS 114

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    ++ G+++H    +     D F+  +L+++YSKCG  ++A+KVF      DVV W
Sbjct: 115 CSGLQKLELGKMIHGFLKKKKIDNDMFVGSALIELYSKCGQMNDAVKVFTEYPKQDVVLW 174

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRE-SSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            +IIT  +Q G  + A   F+ M     V P+   L S   A  +  D   G S+H  + 
Sbjct: 175 TSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVK 234

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           + GF++   + N+++++Y + G +   + +F  + ++D +SW+++ + + D  +    L 
Sbjct: 235 RRGFDTKLCLANSILNLYGKTGSIRSAANLFREMPYKDIISWSSMVACYADNGAETNALN 294

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F +M+ K  + N  T I  L+AC+S S++  GK +H   + +  + +  V T+L+DMY 
Sbjct: 295 LFNEMIDKRIELNRVTVISALRACASSSNLEEGKHIHKLAVNYGFELDITVSTALMDMYM 354

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K    ++A   F+ +  KD+ ++  + + YA+ G A  +L  F  M   G + +   L  
Sbjct: 355 KCFSPKNAIDLFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSYGTRPDAIALVK 414

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L   S +  +     LH+   K+G   + F+  +L+ +YAKC SID+A  VFKG   +D
Sbjct: 415 ILAASSELGIVQQALCLHAFVSKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGMRRKD 474

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV-PDEITFVVVLSACSHMGLIEEGKKHF 478
             +W+ +I  Y  HG GE+AL+ F  M +   V P+++TFV +LSACSH GLIEEG K F
Sbjct: 475 VVTWSSIIAAYGFHGQGEEALKLFYQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMF 534

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
             +   Y + P  +H+  M+D+LGR G+  +  + I E  +     VW  LLGAC  H N
Sbjct: 535 HVMVNEYQLMPNTEHYGIMVDLLGRMGELDKALDMINEMPMQAGPHVWGALLGACRIHQN 594

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           I++ E  A  L  L+P     Y   S+I      W+D + +R L+     KK    S +E
Sbjct: 595 IKIGELAALNLFLLDPNHAGYYTLLSNIYCVDKNWHDAAKLRTLIKENRFKKIVGQSMVE 654

Query: 599 V 599
           +
Sbjct: 655 I 655



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 130/501 (25%), Positives = 246/501 (49%), Gaps = 16/501 (3%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           +H+  +++G A D F+   L  +Y++     +A K+F       V  W A++     +G 
Sbjct: 23  LHSQCLKVGLAHDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEGK 82

Query: 133 CQEAAKIFNLMRESSV---KPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
             E   +F+ M   ++   +P+ + ++  +++ +       G+ IH  + K   ++D  V
Sbjct: 83  WVETLSLFHQMNADAITEERPDNYTVSIALKSCSGLQKLELGKMIHGFLKKKKIDNDMFV 142

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM-LLKG 248
           G+AL+ +Y + G+++   +VF     QD V W ++ + ++   SP+  L  F +M +L+ 
Sbjct: 143 GSALIELYSKCGQMNDAVKVFTEYPKQDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQ 202

Query: 249 FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
             P+  T +    AC+ LSD   G+ +H    +   D    +  S++++Y K+G +  A 
Sbjct: 203 VSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRSAA 262

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
             F  +  KD+ ++++++  YA  G    AL  F +M  + I+ N  T+ S L  C+  +
Sbjct: 263 NLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASSS 322

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
            L  G+ +H +AV  G  LD+ VSTAL+ MY KC S  +A  +F     +D  SW ++  
Sbjct: 323 NLEEGKHIHKLAVNYGFELDITVSTALMDMYMKCFSPKNAIDLFNRMPKKDVVSWAVLFS 382

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGIT 488
           GY + G+  K+L  F  ML  G  PD I  V +L+A S +G++++     + + K  G  
Sbjct: 383 GYAEIGMAHKSLGVFCNMLSYGTRPDAIALVKILAASSELGIVQQALCLHAFVSK-SGFD 441

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEK 548
                 A +I++  +        N + +     + + W +++ A  +HG         E+
Sbjct: 442 NNEFIGASLIELYAKCSSIDN-ANKVFKGMRRKDVVTWSSIIAAYGFHGQ-------GEE 493

Query: 549 LLELEPKMESNY--VFPSDIS 567
            L+L  +M SN+  V P+D++
Sbjct: 494 ALKLFYQM-SNHSDVKPNDVT 513



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 112/411 (27%), Positives = 193/411 (46%), Gaps = 3/411 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLK 59
           M  A +VF   P+ +VV W +++ GY ++G  +  +  F  M  +E+      +L +   
Sbjct: 156 MNDAVKVFTEYPKQDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAAS 215

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             A       G+ VH    R G      L+ S++++Y K G   +A  +F  +   D+++
Sbjct: 216 ACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRSAANLFREMPYKDIIS 275

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W +++ C    G    A  +FN M +  ++ N+  + S +RA   + +   G+ IH +  
Sbjct: 276 WSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKHIHKLAV 335

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
            YGFE D  V  AL+ MYM+         +F  +  +D VSW  LFS + +     + L 
Sbjct: 336 NYGFELDITVSTALMDMYMKCFSPKNAIDLFNRMPKKDVVSWAVLFSGYAEIGMAHKSLG 395

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F  ML  G +P+    + IL A S L  V     LHA   K   D N  +G SL+++Y 
Sbjct: 396 VFCNMLSYGTRPDAIALVKILAASSELGIVQQALCLHAFVSKSGFDNNEFIGASLIELYA 455

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFTLA 358
           K   +++A   F  +  KD+  +++II +Y   G+ E ALK F +M     +K N+ T  
Sbjct: 456 KCSSIDNANKVFKGMRRKDVVTWSSIIAAYGFHGQGEEALKLFYQMSNHSDVKPNDVTFV 515

Query: 359 SCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
           S L+ CS    +  G ++ H +  +   + +      +V +  + G +D A
Sbjct: 516 SILSACSHAGLIEEGIKMFHVMVNEYQLMPNTEHYGIMVDLLGRMGELDKA 566


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 174/516 (33%), Positives = 290/516 (56%), Gaps = 8/516 (1%)

Query: 91  SLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKP 150
           +L++ Y+K  L   A +VF  I  PD+V++  +I     +G C    ++F  +RE  +  
Sbjct: 80  TLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVRELRLGL 139

Query: 151 NQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF 210
           + F L+ ++ A  +  D      +H  +   G +    V NA+++ Y   G +S   RVF
Sbjct: 140 DGFTLSGVITACGD--DVGLVRQLHCFVVVCGHDCYASVNNAVLACYSRKGFLSEARRVF 197

Query: 211 EAIAH---QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLS 267
             +     +D VSWNA+      +    + + +F +M+ +G K +M T   +L A + + 
Sbjct: 198 REMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFTCVK 257

Query: 268 DVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK-SGCLEDAGVAFDSLANKDLFAYTAII 326
           D+  G+Q H   IK    GN  VG+ L+D+Y K +G + +    F+ +   DL  +  +I
Sbjct: 258 DLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMI 317

Query: 327 TSYAQAGE-AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH 385
           + ++   + +E  L CFR+M+  G + ++ +     + CS +++ + G+ +H++A+K+  
Sbjct: 318 SGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDV 377

Query: 386 LLDMF-VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
             +   V+ ALVAMY+KCG++ DA  VF      +T S N MI GY +HG+  ++L  F 
Sbjct: 378 PYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVESLRLFE 437

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA 504
           +ML++   P+ ITF+ VLSAC H G +EEG+K+F+ +K+ + I P  +H++CMID+LGRA
Sbjct: 438 LMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHYSCMIDLLGRA 497

Query: 505 GKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564
           GK  E E  I      P ++ W  LLGAC  HGN+EL  K A + L LEP   + YV  S
Sbjct: 498 GKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLRLEPYNAAPYVMLS 557

Query: 565 DISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           ++ A+  RW + + V+ L+  +G+KK+P CSWIE+D
Sbjct: 558 NMYASAARWEEAATVKRLMRERGVKKKPGCSWIEID 593



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/453 (28%), Positives = 218/453 (48%), Gaps = 16/453 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + +A+RVF  +P+ ++VS+N L+  YA+ G+    + LF  ++++      F+LS V+  
Sbjct: 91  IHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVRELRLGLDGFTLSGVITA 150

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSC--SLVDMYSKCGLADNALKVFYRIKD---P 115
             +      G V       + C  D + S   +++  YS+ G    A +VF  + +    
Sbjct: 151 CGDD----VGLVRQLHCFVVVCGHDCYASVNNAVLACYSRKGFLSEARRVFREMGEGGGR 206

Query: 116 DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH 175
           D V+W A+I    Q     EA  +F  M    +K + F + S++ A T   D   G   H
Sbjct: 207 DEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGRQFH 266

Query: 176 AVICKYGFESDTLVGNALVSMYME-NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES- 233
            ++ K GF  ++ VG+ L+ +Y +  G +    +VFE I   D V WN + S F  YE  
Sbjct: 267 GMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMISGFSLYEDL 326

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGT 292
            + GL  F +M   GF+P+ C+F+ +  ACS+LS    GKQ+HA  IK  +  N V V  
Sbjct: 327 SEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDVPYNRVSVNN 386

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           +LV MY K G + DA   FD++   +  +  ++I  YAQ G    +L+ F  M  + I  
Sbjct: 387 ALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVESLRLFELMLEKDIAP 446

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS--TALVAMYAKCGSIDDAEA 410
           N  T  + L+ C     +  G+   ++ +K    ++      + ++ +  + G + +AE 
Sbjct: 447 NSITFIAVLSACVHTGKVEEGQKYFNM-MKERFCIEPEAEHYSCMIDLLGRAGKLKEAER 505

Query: 411 VFKGSALRD-TASWNMMIGGYVKHGLGEKALEA 442
           + +       +  W  ++G   KHG  E A++A
Sbjct: 506 IIETMPFNPGSIEWATLLGACRKHGNVELAVKA 538



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 121/479 (25%), Positives = 198/479 (41%), Gaps = 85/479 (17%)

Query: 157 SLVRATTETGDQRCGESIHAVICKYGFESDTLVG-------------------------- 190
           +L++A     D   G+ +HA+  K      T +                           
Sbjct: 14  NLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHLTQYP 73

Query: 191 -----NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
                N L++ Y ++  +    RVF+ I   D VS+N L + + D       LR+F ++ 
Sbjct: 74  NVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVR 133

Query: 246 -----LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
                L GF     T   ++ AC    DVG  +QLH   +    D    V  +++  Y +
Sbjct: 134 ELRLGLDGF-----TLSGVITACG--DDVGLVRQLHCFVVVCGHDCYASVNNAVLACYSR 186

Query: 301 SGCLEDAGVAFDSLAN---KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
            G L +A   F  +     +D  ++ A+I +  Q  E   A+  FR+M   G+K + FT+
Sbjct: 187 KGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTM 246

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC-GSIDDAEAVFKGSA 416
           AS L   + V  L  GR  H + +K+G   +  V + L+ +Y+KC GS+ +   VF+   
Sbjct: 247 ASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEIT 306

Query: 417 LRDTASWNMMIGGY-VKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
             D   WN MI G+ +   L E  L  FR M   G+ PD+ +FV V SACS++     GK
Sbjct: 307 APDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGK 366

Query: 476 K-HFSSIK----------------------------KIYGITPTIKHFACMIDILGRAGK 506
           + H  +IK                            +++   P     +    I G A  
Sbjct: 367 QVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQH 426

Query: 507 FTEIEN-----FITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE---LEPKME 557
             E+E+      + E  + PN++ +  +L AC   G +E  +K    + E   +EP+ E
Sbjct: 427 GVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAE 485



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 172/365 (47%), Gaps = 9/365 (2%)

Query: 4   AKRVFKSMPE---LNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           A+RVF+ M E    + VSWNA++    +  +G + + LF  M     K   F++++VL  
Sbjct: 193 ARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTA 252

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKC-GLADNALKVFYRIKDPDVVA 119
           F     +  G+  H M I+ G   +  +   L+D+YSKC G      KVF  I  PD+V 
Sbjct: 253 FTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVL 312

Query: 120 WGAIITCLD-QQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           W  +I+     +   ++    F  M+ +  +P+      +  A +       G+ +HA+ 
Sbjct: 313 WNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALA 372

Query: 179 CKYGFESDTL-VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
            K     + + V NALV+MY + G V    RVF+ +   ++VS N++ + +  +    + 
Sbjct: 373 IKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVES 432

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFG-KQLHAHTIKHSLDGNHVVGTSLVD 296
           LR+F  ML K   PN  TFI +L AC     V  G K  +    +  ++      + ++D
Sbjct: 433 LRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHYSCMID 492

Query: 297 MYDKSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRK-MRLEGIKSNE 354
           +  ++G L++A    +++  N     +  ++ +  + G  E+A+K   + +RLE   +  
Sbjct: 493 LLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLRLEPYNAAP 552

Query: 355 FTLAS 359
           + + S
Sbjct: 553 YVMLS 557



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 141/348 (40%), Gaps = 45/348 (12%)

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
           TF  +LKAC +  D+  GK LHA   K  +  +  +      +Y K G L +A  +F   
Sbjct: 11  TFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHLT 70

Query: 315 ANKDLFAYTAIITSYAQ-------------------------------AGEAEMALKCFR 343
              ++F+Y  +I +YA+                                GE    L+ F 
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFE 130

Query: 344 KMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403
           ++R   +  + FTL+  +  C     L   R LH   V  GH     V+ A++A Y++ G
Sbjct: 131 EVRELRLGLDGFTLSGVITACGDDVGLV--RQLHCFVVVCGHDCYASVNNAVLACYSRKG 188

Query: 404 SIDDAEAVFK---GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVV 460
            + +A  VF+       RD  SWN MI    +H  G +A+  FR M+  G   D  T   
Sbjct: 189 FLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMAS 248

Query: 461 VLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGR-AGKFTEIENFITETKL 519
           VL+A + +  +  G++ F  +    G        + +ID+  + AG   E      E   
Sbjct: 249 VLTAFTCVKDLVGGRQ-FHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEIT- 306

Query: 520 TPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            P+ ++W  ++   S      L E  +E  L    +M+ N   P D S
Sbjct: 307 APDLVLWNTMISGFS------LYEDLSEDGLWCFREMQRNGFRPDDCS 348


>gi|302773325|ref|XP_002970080.1| hypothetical protein SELMODRAFT_171135 [Selaginella moellendorffii]
 gi|300162591|gb|EFJ29204.1| hypothetical protein SELMODRAFT_171135 [Selaginella moellendorffii]
          Length = 829

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 187/609 (30%), Positives = 316/609 (51%), Gaps = 15/609 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R F +M   NVVSW+A++  YA+ G     + LF  M     K +  +  +VL   A+
Sbjct: 96  ARRAFDAMVVRNVVSWSAMIAAYAQRGHPGDALELFVRMDHEGVKANAITFVSVLDACAS 155

Query: 64  SGYIKAGQVVHAMAIRLGC-ALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
              I  G+ +H   +  G    D  L  ++V+MY KCG  D A +VF R++  + V W  
Sbjct: 156 MRAIALGKSIHERIVADGLLGDDVILGNTIVNMYGKCGEVDLAREVFERMEAKNAVTWNT 215

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I    +    +EA  +   M    ++PN+  L S++ A         G  +H ++   G
Sbjct: 216 MIAACSRHDRYKEAFALLGEMDLDGLRPNKITLVSVIDACAWMQSIVRGRIVHEIVAGEG 275

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            ESD  V NALV++Y + G++       E I  +D +SW  L + +  +    + + +  
Sbjct: 276 LESDNTVANALVNLYGKCGKLRAARHALEGIETRDKISWTTLLAAYARHGHGKRAIAVIK 335

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M  +G K +  TF+ +L++C +++ +  G+++H    +  ++ + V+ T+LVDMY K G
Sbjct: 336 RMDHEGVKLDSFTFVNLLESCVAIAALALGEEIHDRLAESGIELDPVLQTALVDMYGKCG 395

Query: 303 CLEDAGVAFDSLAN-KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
             + A  AFD +++ +D+  + A++ +Y    + +  L  F +M L+G+  +  T  S L
Sbjct: 396 NPDAARRAFDRMSDVRDVTVWNALLAAYVLRDQGKETLGIFARMSLQGVAPDAVTFLSIL 455

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDM-------FVSTALVAMYAKCGSIDDAEAVF-- 412
           + C+ +A L  GRL HS  ++ G L D         ++T+++ MYAKCGS+ DA+A F  
Sbjct: 456 DACASLAALGLGRLTHSRMLERG-LFDRQAVASADLLTTSVINMYAKCGSLADAKAEFAK 514

Query: 413 -KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
            + +   D  +W+ M+  Y + GL E+AL  F  M  EG  PD ++FV  ++ CSH GL+
Sbjct: 515 ARRARASDVVAWSAMVAAYSQFGLSEEALRCFYSMQQEGVKPDSVSFVSAIAGCSHSGLV 574

Query: 472 EEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLG 531
            E    F+S++  +GI PT  HFAC++D+L RAG   E E  +    L  +   W  LL 
Sbjct: 575 REAVAFFTSLRHDHGIAPTEAHFACLVDLLSRAGWIREAEALMRRAPLGAHHSTWMTLLS 634

Query: 532 ACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
           AC  +G++E   + A +L  L  +  S Y   + +     +W+D    R  L  +G   +
Sbjct: 635 ACRTYGDLERARRVAARLASL--RSGSAYSLLASVFCLSRKWDDVRNARQSLVERGFITQ 692

Query: 592 PSCSWIEVD 600
           P CSWIE++
Sbjct: 693 PGCSWIEIN 701



 Score =  231 bits (590), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 133/468 (28%), Positives = 234/468 (50%), Gaps = 3/468 (0%)

Query: 11  MPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAG 70
           M + +  SWN  +  YA +G   + + +F +M        + S   +L  FA+ G +  G
Sbjct: 1   MADRSPFSWNLAIAEYARNGHHARALEIFRAMALEGVAPDRVSCIAILDAFASLGDLSQG 60

Query: 71  QVVHAMAIRL-GCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
           +  H       G   D  ++ +++ MY++CG   +A + F  +   +VV+W A+I    Q
Sbjct: 61  EFFHRTVCEASGLGSDVVVATAVLTMYNRCGSVSHARRAFDAMVVRNVVSWSAMIAAYAQ 120

Query: 130 QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF-ESDTL 188
           +G   +A ++F  M    VK N     S++ A         G+SIH  I   G    D +
Sbjct: 121 RGHPGDALELFVRMDHEGVKANAITFVSVLDACASMRAIALGKSIHERIVADGLLGDDVI 180

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG 248
           +GN +V+MY + G V     VFE +  +++V+WN + +    ++   +   +  +M L G
Sbjct: 181 LGNTIVNMYGKCGEVDLAREVFERMEAKNAVTWNTMIAACSRHDRYKEAFALLGEMDLDG 240

Query: 249 FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
            +PN  T + ++ AC+ +  +  G+ +H       L+ ++ V  +LV++Y K G L  A 
Sbjct: 241 LRPNKITLVSVIDACAWMQSIVRGRIVHEIVAGEGLESDNTVANALVNLYGKCGKLRAAR 300

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
            A + +  +D  ++T ++ +YA+ G  + A+   ++M  EG+K + FT  + L  C  +A
Sbjct: 301 HALEGIETRDKISWTTLLAAYARHGHGKRAIAVIKRMDHEGVKLDSFTFVNLLESCVAIA 360

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF-KGSALRDTASWNMMI 427
            LA G  +H    ++G  LD  + TALV MY KCG+ D A   F + S +RD   WN ++
Sbjct: 361 ALALGEEIHDRLAESGIELDPVLQTALVDMYGKCGNPDAARRAFDRMSDVRDVTVWNALL 420

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
             YV    G++ L  F  M  +G  PD +TF+ +L AC+ +  +  G+
Sbjct: 421 AAYVLRDQGKETLGIFARMSLQGVAPDAVTFLSILDACASLAALGLGR 468



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 122/434 (28%), Positives = 206/434 (47%), Gaps = 23/434 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++LA+ VF+ M   N V+WN ++   +     ++   L   M     + +K +L +V+  
Sbjct: 195 VDLAREVFERMEAKNAVTWNTMIAACSRHDRYKEAFALLGEMDLDGLRPNKITLVSVIDA 254

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    I  G++VH +    G   D  ++ +LV++Y KCG    A      I+  D ++W
Sbjct: 255 CAWMQSIVRGRIVHEIVAGEGLESDNTVANALVNLYGKCGKLRAARHALEGIETRDKISW 314

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             ++    + G  + A  +   M    VK + F   +L+ +         GE IH  + +
Sbjct: 315 TTLLAAYARHGHGKRAIAVIKRMDHEGVKLDSFTFVNLLESCVAIAALALGEEIHDRLAE 374

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH-QDSVSWNALFSRFQDYESPDQGLR 239
            G E D ++  ALV MY + G      R F+ ++  +D   WNAL + +   +   + L 
Sbjct: 375 SGIELDPVLQTALVDMYGKCGNPDAARRAFDRMSDVRDVTVWNALLAAYVLRDQGKETLG 434

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG------TS 293
           IF +M L+G  P+  TF+ IL AC+SL+ +G G+  H+  ++  L     V       TS
Sbjct: 435 IFARMSLQGVAPDAVTFLSILDACASLAALGLGRLTHSRMLERGLFDRQAVASADLLTTS 494

Query: 294 LVDMYDKSGCLEDAGVAFDSLAN---KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
           +++MY K G L DA   F         D+ A++A++ +Y+Q G +E AL+CF  M+ EG+
Sbjct: 495 VINMYAKCGSLADAKAEFAKARRARASDVVAWSAMVAAYSQFGLSEEALRCFYSMQQEGV 554

Query: 351 KSNEFTLASCLNGCS-------PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403
           K +  +  S + GCS        VA   + R  H IA    H         LV + ++ G
Sbjct: 555 KPDSVSFVSAIAGCSHSGLVREAVAFFTSLRHDHGIAPTEAHF------ACLVDLLSRAG 608

Query: 404 SIDDAEAVFKGSAL 417
            I +AEA+ + + L
Sbjct: 609 WIREAEALMRRAPL 622



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 1/121 (0%)

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           R   SWN+ I  Y ++G   +ALE FR M  EG  PD ++ + +L A + +G + +G+  
Sbjct: 4   RSPFSWNLAIAEYARNGHHARALEIFRAMALEGVAPDRVSCIAILDAFASLGDLSQGEFF 63

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
             ++ +  G+   +     ++ +  R G  +       +  +  N + W  ++ A +  G
Sbjct: 64  HRTVCEASGLGSDVVVATAVLTMYNRCGSVSHARRAF-DAMVVRNVVSWSAMIAAYAQRG 122

Query: 538 N 538
           +
Sbjct: 123 H 123


>gi|218195864|gb|EEC78291.1| hypothetical protein OsI_18005 [Oryza sativa Indica Group]
          Length = 690

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 180/550 (32%), Positives = 294/550 (53%), Gaps = 5/550 (0%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
           ++ +L+  A    ++ G  +HA  ++LG   D  L+ +L+DMY+KCG    A +VF  + 
Sbjct: 7   IADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMP 66

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES 173
           + +VV+W A++      G  +E  ++F  MR S   PN+F L++ ++A    G  R G  
Sbjct: 67  ERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACG--GGTRAGVQ 124

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           IH V  + GFE   +V N+LV MY +        RVF+ I  ++  +WN++ S +     
Sbjct: 125 IHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQ 184

Query: 234 PDQGLRIFYQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLD--GNHVV 290
               L +F +M  +   +P+  TF  +LKACS L     G Q+HA      +    N ++
Sbjct: 185 GRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAIL 244

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
             +L+D+Y K   L  A   FD L  ++   +T +I  +AQ G+ + A+  FR+    G+
Sbjct: 245 AGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGV 304

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
           +++   L+S +   +  A +  G+ +H    KT   LD+ V+ +LV MY KCG   +A  
Sbjct: 305 RADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGR 364

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
            F+    R+  SW  MI G  KHG G +A++ F  M  EG   DE+ ++ +LSACSH GL
Sbjct: 365 RFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSGL 424

Query: 471 IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
           ++E +++FS I +   + P  +H+ACM+D+LGRAG+  E +  I    + P   VW+ LL
Sbjct: 425 VDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLL 484

Query: 531 GACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKK 590
            AC  H ++ +  +  + LL ++     NYV  S+I A  G W +  G+R  +  +G++K
Sbjct: 485 SACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGAMRRKGLRK 544

Query: 591 EPSCSWIEVD 600
           +  CSW EVD
Sbjct: 545 QGGCSWTEVD 554



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/389 (28%), Positives = 188/389 (48%), Gaps = 9/389 (2%)

Query: 154 VLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAI 213
           ++  L+RA+      R G  +HA + K GF SDT++ N L+ MY + G++     VF+ +
Sbjct: 6   MIADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGM 65

Query: 214 AHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGK 273
             ++ VSW AL   F  +    + LR+F +M   G  PN  T    LKAC   +  G   
Sbjct: 66  PERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGGGTRAGV-- 123

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
           Q+H   ++   +G+ VV  SLV MY K     DA   FD + +++L  + ++I+ YA AG
Sbjct: 124 QIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAG 183

Query: 334 EAEMALKCFRKM-RLEGIKSNEFTLASCLNGCSPVATLANGRLLH-SIAVK-TGHLLDMF 390
           +   +L  FR+M R    + +EFT AS L  CS +     G  +H ++AV+      +  
Sbjct: 184 QGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAI 243

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
           ++ AL+ +Y KC  +  A  VF G   R+   W  +I G+ + G  ++A+  FR     G
Sbjct: 244 LAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSG 303

Query: 451 YVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTE 509
              D      V++  +   L+E+GK+ H  + K   G+  ++ +   ++D+  + G   E
Sbjct: 304 VRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVAN--SLVDMYLKCGLTGE 361

Query: 510 IENFITETKLTPNALVWENLLGACSWHGN 538
                 E     N + W  ++     HG+
Sbjct: 362 AGRRFREMP-ARNVVSWTAMINGVGKHGH 389



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 184/368 (50%), Gaps = 5/368 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + +A  VF  MPE NVVSW AL+ G+   G+ ++ + LF  M+      ++F+LS  LK 
Sbjct: 55  LHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLK- 113

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A  G  +AG  +H + +R G      ++ SLV MYSK     +A +VF  I   ++  W
Sbjct: 114 -ACGGGTRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATW 172

Query: 121 GAIITCLDQQGCCQEAAKIFNLM-RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            ++I+     G  +++  +F  M R    +P++F   SL++A +  G  R G  +HA + 
Sbjct: 173 NSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMA 232

Query: 180 KYGFE--SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
             G    S+ ++  AL+ +Y++  R+    +VF+ +  ++++ W  +           + 
Sbjct: 233 VRGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEA 292

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           + +F +    G + +      ++   +  + V  GKQ+H +T K     +  V  SLVDM
Sbjct: 293 MCLFRRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDM 352

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K G   +AG  F  +  +++ ++TA+I    + G    A+  F +M+ EG++++E   
Sbjct: 353 YLKCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAY 412

Query: 358 ASCLNGCS 365
            + L+ CS
Sbjct: 413 LALLSACS 420



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 36/64 (56%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A R F+ MP  NVVSW A++NG  + G G++ + LF  M+    +  + +   +L   ++
Sbjct: 362 AGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSH 421

Query: 64  SGYI 67
           SG +
Sbjct: 422 SGLV 425


>gi|357508205|ref|XP_003624391.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499406|gb|AES80609.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 709

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 178/539 (33%), Positives = 296/539 (54%), Gaps = 4/539 (0%)

Query: 56  TVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP 115
            +L+ +A       G  +HA  I+       FL   L++MY KC    +AL++F  + + 
Sbjct: 10  NLLRSYAQDSNFLKGTAIHAYFIKGHIPFTLFLQNHLLNMYIKCKDLTSALQLFDEMPER 69

Query: 116 DVVAWGAIITCLDQQGCCQEAAKIFNLM-RESSVKPNQFVLTSLVRATTETGDQRCGESI 174
           +VV+W +++T     G   +A  +F+ M RE  VKPN+F   S ++A + + +      I
Sbjct: 70  NVVSWSSVMTGCVHNGGASDALSLFSCMHREGFVKPNEFTFVSALQACSLSENVTQAYQI 129

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           ++++ + G E +  + NA ++  + NG+++   ++FE    +D+V+WN +   + ++ S 
Sbjct: 130 YSLVVRSGLECNVFLLNAFLTALVRNGKLTEALQIFETSPIRDTVTWNTMMGGYLEFSS- 188

Query: 235 DQGLRIFYQ-MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
            + + +F++ M  +G KP+  TF   L   +++S +  G Q+HA  ++     +  VG S
Sbjct: 189 -EQIPVFWRYMNREGVKPDEFTFASALTGLATISSLKMGMQVHAQLVRSGYGDDICVGNS 247

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           LVDMY K+  LE+   AFD + +KD+ ++T +     Q GE  MAL    KM+  G+K N
Sbjct: 248 LVDMYLKNQKLEEGFKAFDEIPHKDVCSWTQMADGCLQWGEPRMALAVIAKMKKMGVKPN 307

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
           +FTLA+ LN C+ +A++  G+  H + +K G  +D+ V  AL+ MYAKCG +D A  VF+
Sbjct: 308 KFTLATALNACACLASMEEGKQFHGLRIKLGSDVDVCVDNALLDMYAKCGCMDSAWTVFR 367

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
            +  R   SW  MI    ++G   +AL+ F  M +    P+ ITF+ VL ACS  G ++E
Sbjct: 368 STNSRSVVSWTTMIMACAQNGQPGEALQIFDEMKETSVEPNYITFICVLYACSQGGFVDE 427

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           G K+ SS+ K YGI P   H+ CM+ ILGRAG   E +  I      P   VW+ LL AC
Sbjct: 428 GWKYLSSMDKDYGIIPGEDHYICMVSILGRAGLIKEAKELILRMPFHPGVRVWQTLLSAC 487

Query: 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEP 592
             HG++E  +  AE  ++ +    S+YV  S++ A    W+    +R L+ ++ +KK P
Sbjct: 488 QIHGDVETGKLAAEHAIKHDKNDPSSYVLLSNMLAETSNWDCVVSLRELMETRNVKKVP 546



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 112/434 (25%), Positives = 200/434 (46%), Gaps = 4/434 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLF-CSMKDMEKKFSKFSLSTVLKGFA 62
           A ++F  MPE NVVSW++++ G   +G     + LF C  ++   K ++F+  + L+  +
Sbjct: 59  ALQLFDEMPERNVVSWSSVMTGCVHNGGASDALSLFSCMHREGFVKPNEFTFVSALQACS 118

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
            S  +     ++++ +R G   + FL  + +    + G    AL++F      D V W  
Sbjct: 119 LSENVTQAYQIYSLVVRSGLECNVFLLNAFLTALVRNGKLTEALQIFETSPIRDTVTWNT 178

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           ++     +   ++    +  M    VKP++F   S +         + G  +HA + + G
Sbjct: 179 MMGGY-LEFSSEQIPVFWRYMNREGVKPDEFTFASALTGLATISSLKMGMQVHAQLVRSG 237

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           +  D  VGN+LV MY++N ++  G + F+ I H+D  SW  +      +  P   L +  
Sbjct: 238 YGDDICVGNSLVDMYLKNQKLEEGFKAFDEIPHKDVCSWTQMADGCLQWGEPRMALAVIA 297

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M   G KPN  T    L AC+ L+ +  GKQ H   IK   D +  V  +L+DMY K G
Sbjct: 298 KMKKMGVKPNKFTLATALNACACLASMEEGKQFHGLRIKLGSDVDVCVDNALLDMYAKCG 357

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
           C++ A   F S  ++ + ++T +I + AQ G+   AL+ F +M+   ++ N  T    L 
Sbjct: 358 CMDSAWTVFRSTNSRSVVSWTTMIMACAQNGQPGEALQIFDEMKETSVEPNYITFICVLY 417

Query: 363 GCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA-EAVFKGSALRDT 420
            CS    +  G + L S+    G +        +V++  + G I +A E + +       
Sbjct: 418 ACSQGGFVDEGWKYLSSMDKDYGIIPGEDHYICMVSILGRAGLIKEAKELILRMPFHPGV 477

Query: 421 ASWNMMIGGYVKHG 434
             W  ++     HG
Sbjct: 478 RVWQTLLSACQIHG 491



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 120/233 (51%), Gaps = 3/233 (1%)

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
           +I +L++ +  S+   G  +HA+ IK  +     +   L++MY K   L  A   FD + 
Sbjct: 8   YINLLRSYAQDSNFLKGTAIHAYFIKGHIPFTLFLQNHLLNMYIKCKDLTSALQLFDEMP 67

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG-IKSNEFTLASCLNGCSPVATLANGR 374
            +++ ++++++T     G A  AL  F  M  EG +K NEFT  S L  CS    +    
Sbjct: 68  ERNVVSWSSVMTGCVHNGGASDALSLFSCMHREGFVKPNEFTFVSALQACSLSENVTQAY 127

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
            ++S+ V++G   ++F+  A +    + G + +A  +F+ S +RDT +WN M+GGY++  
Sbjct: 128 QIYSLVVRSGLECNVFLLNAFLTALVRNGKLTEALQIFETSPIRDTVTWNTMMGGYLEFS 187

Query: 435 LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYG 486
             E+    +R M  EG  PDE TF   L+  + +  ++ G + H   ++  YG
Sbjct: 188 -SEQIPVFWRYMNREGVKPDEFTFASALTGLATISSLKMGMQVHAQLVRSGYG 239



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 89/166 (53%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E   + F  +P  +V SW  + +G  + G+ +  + +   MK M  K +KF+L+T L  
Sbjct: 258 LEEGFKAFDEIPHKDVCSWTQMADGCLQWGEPRMALAVIAKMKKMGVKPNKFTLATALNA 317

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    ++ G+  H + I+LG  +D  +  +L+DMY+KCG  D+A  VF       VV+W
Sbjct: 318 CACLASMEEGKQFHGLRIKLGSDVDVCVDNALLDMYAKCGCMDSAWTVFRSTNSRSVVSW 377

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
             +I    Q G   EA +IF+ M+E+SV+PN      ++ A ++ G
Sbjct: 378 TTMIMACAQNGQPGEALQIFDEMKETSVEPNYITFICVLYACSQGG 423



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 11/174 (6%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A  VF+S    +VVSW  ++   A++G   + + +F  MK+   + +  +   VL  
Sbjct: 359 MDSAWTVFRSTNSRSVVSWTTMIMACAQNGQPGEALQIFDEMKETSVEPNYITFICVLYA 418

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            +  G++  G + + +M    G    +     +V +  + GL   A ++  R+   P V 
Sbjct: 419 CSQGGFVDEGWKYLSSMDKDYGIIPGEDHYICMVSILGRAGLIKEAKELILRMPFHPGVR 478

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVK-----PNQFVLTSLVRATTETGD 167
            W  +++     G  +       L  E ++K     P+ +VL S + A T   D
Sbjct: 479 VWQTLLSACQIHGDVETG----KLAAEHAIKHDKNDPSSYVLLSNMLAETSNWD 528


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 174/516 (33%), Positives = 291/516 (56%), Gaps = 8/516 (1%)

Query: 91  SLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKP 150
           +L++ Y+K  L   A +VF  I  PD+V++  +I     +G C+ A ++F  +RE     
Sbjct: 80  TLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVRELRFGL 139

Query: 151 NQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF 210
           + F L+ ++ A  +  D      +H  +   G++    V NA+++ Y   G ++   RVF
Sbjct: 140 DGFTLSGVIIACGD--DVGLVRQLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVF 197

Query: 211 EAIAH---QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLS 267
             +     +D VSWNA+      +    + + +F +M+ +G K +M T   +L A + + 
Sbjct: 198 REMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVK 257

Query: 268 DVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK-SGCLEDAGVAFDSLANKDLFAYTAII 326
           D+  G Q H   IK    GN  VG+ L+D+Y K +G + +    F+ +A  DL  +  +I
Sbjct: 258 DLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMI 317

Query: 327 TSYAQAGE-AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH 385
           + ++Q  + +E  + CFR+M+  G   ++ +     + CS +++ + G+ +H++A+K+  
Sbjct: 318 SGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDI 377

Query: 386 LLDMF-VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
             +   V+ ALVAMY+KCG++ DA  VF      +  S N MI GY +HG+  ++L  F 
Sbjct: 378 PYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFE 437

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA 504
           +ML +   P+ ITF+ VLSAC H G +EEG+K+F+ +K+ + I P  +H++CMID+LGRA
Sbjct: 438 LMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRA 497

Query: 505 GKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564
           GK  E E  I      P ++ W  LLGAC  HGN+EL  K A + L+LEP   + YV  S
Sbjct: 498 GKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLQLEPYNAAPYVMLS 557

Query: 565 DISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           ++ A+  RW + + V+ L+  +G+KK+P CSWIE+D
Sbjct: 558 NMYASAARWEEAATVKRLMRERGVKKKPGCSWIEID 593



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 126/452 (27%), Positives = 221/452 (48%), Gaps = 14/452 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + LA++VF  +P+ ++VS+N L+  YA+ G+ +  + LF  ++++      F+LS V+  
Sbjct: 91  IHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVRELRFGLDGFTLSGVIIA 150

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSC--SLVDMYSKCGLADNALKVFYRIKD---P 115
             +      G V       + C  D + S   +++  YS+ G  + A +VF  + +    
Sbjct: 151 CGDD----VGLVRQLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGR 206

Query: 116 DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH 175
           D V+W A+I    Q     EA ++F  M    +K + F + S++ A T   D   G   H
Sbjct: 207 DEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQFH 266

Query: 176 AVICKYGFESDTLVGNALVSMYME-NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES- 233
            ++ K GF  ++ VG+ L+ +Y +  G +    +VFE IA  D V WN + S F  YE  
Sbjct: 267 GMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYEDL 326

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGT 292
            + G+  F +M   GF P+ C+F+ +  ACS+LS    GKQ+HA  IK  +  N V V  
Sbjct: 327 SEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNN 386

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           +LV MY K G + DA   FD++   ++ +  ++I  YAQ G    +L+ F  M  + I  
Sbjct: 387 ALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAP 446

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL-LDMFVSTALVAMYAKCGSIDDAEAV 411
           N  T  + L+ C     +  G+   ++  +   +  +    + ++ +  + G + +AE +
Sbjct: 447 NTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAERI 506

Query: 412 FKGSALRD-TASWNMMIGGYVKHGLGEKALEA 442
            +       +  W  ++G   KHG  E A++A
Sbjct: 507 IETMPFNPGSIEWATLLGACRKHGNVELAVKA 538



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 172/379 (45%), Gaps = 23/379 (6%)

Query: 4   AKRVFKSMPE---LNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           A+RVF+ M E    + VSWNA++    +  +G + + LF  M     K   F++++VL  
Sbjct: 193 ARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTA 252

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKC-GLADNALKVFYRIKDPDVVA 119
           F     +  G   H M I+ G   +  +   L+D+YSKC G      KVF  I  PD+V 
Sbjct: 253 FTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVL 312

Query: 120 WGAIITCLDQ-QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           W  +I+   Q +   ++    F  M+ +   P+      +  A +       G+ +HA+ 
Sbjct: 313 WNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALA 372

Query: 179 CKYGFESDTL-VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
            K     + + V NALV+MY + G V    RVF+ +   + VS N++ + +  +    + 
Sbjct: 373 IKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVES 432

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ---LHAHTIKHSLDGNHVVGTSL 294
           LR+F  ML K   PN  TFI +L AC     V  G++   +     +   +  H   + +
Sbjct: 433 LRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHY--SCM 490

Query: 295 VDMYDKSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           +D+  ++G L++A    +++  N     +  ++ +  + G  E+A+K           +N
Sbjct: 491 IDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVK----------AAN 540

Query: 354 EFTLASCLNGCSPVATLAN 372
           EF      N  +P   L+N
Sbjct: 541 EFLQLEPYNA-APYVMLSN 558



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 137/329 (41%), Gaps = 39/329 (11%)

Query: 249 FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
           F   + TF  +LKAC +  D+  GK LHA   K  +  +  +      +Y K G L +A 
Sbjct: 5   FPLQLQTFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQ 64

Query: 309 VAFDSLANKDLFAYTAIITSYAQ-------------------------------AGEAEM 337
            +FD     ++F+Y  +I +YA+                                GE   
Sbjct: 65  TSFDLTQYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRP 124

Query: 338 ALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVA 397
           AL+ F ++R      + FTL+  +  C     L   R LH   V  G+     V+ A++A
Sbjct: 125 ALRLFAEVRELRFGLDGFTLSGVIIACGDDVGLV--RQLHCFVVVCGYDCYASVNNAVLA 182

Query: 398 MYAKCGSIDDAEAVFK---GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD 454
            Y++ G +++A  VF+       RD  SWN MI    +H  G +A+E FR M+  G   D
Sbjct: 183 CYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVD 242

Query: 455 EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGR-AGKFTEIENF 513
             T   VL+A + +  +  G + F  +    G        + +ID+  + AG   E    
Sbjct: 243 MFTMASVLTAFTCVKDLVGGMQ-FHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKV 301

Query: 514 ITETKLTPNALVWENLLGACSWHGNIELD 542
             E    P+ ++W  ++   S + ++  D
Sbjct: 302 FEEIA-APDLVLWNTMISGFSQYEDLSED 329


>gi|15226737|ref|NP_181604.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276036|sp|Q7XJN6.1|PP197_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g40720
 gi|330254774|gb|AEC09868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 194/599 (32%), Positives = 314/599 (52%), Gaps = 3/599 (0%)

Query: 4   AKRVFKSMPEL-NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           A RVF  + +  NVV WN ++ G+  SG  +  + L+   K+   K    S +  L   +
Sbjct: 224 AWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACS 283

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
            S     G+ +H   +++G   D ++  SL+ MYSKCG+   A  VF  + D  +  W A
Sbjct: 284 QSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNA 343

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           ++    +      A  +F  MR+ SV P+ F L++++   +  G    G+S+HA + K  
Sbjct: 344 MVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRP 403

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            +S + + +AL+++Y + G       VF+++  +D V+W +L S         + L++F 
Sbjct: 404 IQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFG 463

Query: 243 QMLLK--GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
            M       KP+      +  AC+ L  + FG Q+H   IK  L  N  VG+SL+D+Y K
Sbjct: 464 DMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSK 523

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G  E A   F S++ +++ A+ ++I+ Y++    E+++  F  M  +GI  +  ++ S 
Sbjct: 524 CGLPEMALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSV 583

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L   S  A+L  G+ LH   ++ G   D  +  AL+ MY KCG    AE +FK    +  
Sbjct: 584 LVAISSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSL 643

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            +WN+MI GY  HG    AL  F  M   G  PD++TF+ ++SAC+H G +EEGK  F  
Sbjct: 644 ITWNLMIYGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEF 703

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +K+ YGI P ++H+A M+D+LGRAG   E  +FI    +  ++ +W  LL A   H N+E
Sbjct: 704 MKQDYGIEPNMEHYANMVDLLGRAGLLEEAYSFIKAMPIEADSSIWLCLLSASRTHHNVE 763

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           L    AEKLL +EP+  S YV   ++    G  N+ + +  L+  +G+ K+P CSWIEV
Sbjct: 764 LGILSAEKLLRMEPERGSTYVQLINLYMEAGLKNEAAKLLGLMKEKGLHKQPGCSWIEV 822



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 153/567 (26%), Positives = 263/567 (46%), Gaps = 26/567 (4%)

Query: 18  SWNALLNGYAESGDGQKVMHLFCSMKDMEKKF--SKFSLSTVLKGFANSGYIKAGQVVHA 75
           S N+ +    + G+  + +HL+ S  D    F  S F+  ++LK  +    +  G+ +H 
Sbjct: 26  SINSGIRALIQKGEYLQALHLY-SKHDGSSPFWTSVFTFPSLLKACSALTNLSYGKTIHG 84

Query: 76  MAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF-------YRIKDPDVVAWGAIITCLD 128
             + LG   D F++ SLV+MY KCG  D A++VF         +   DV  W ++I    
Sbjct: 85  SVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVTVWNSMIDGYF 144

Query: 129 QQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC--GESIHAVICKYGFESD 186
           +    +E    F  M    V+P+ F L+ +V    + G+ R   G+ IH  + +   ++D
Sbjct: 145 KFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHGFMLRNSLDTD 204

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS-WNALFSRFQDYESPDQGLRIFYQML 245
           + +  AL+ MY + G      RVF  I  + +V  WN +   F      +  L ++    
Sbjct: 205 SFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYMLAK 264

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
               K    +F   L ACS   + GFG+Q+H   +K  L  +  V TSL+ MY K G + 
Sbjct: 265 NNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVG 324

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
           +A   F  + +K L  + A++ +YA+      AL  F  MR + +  + FTL++ ++ CS
Sbjct: 325 EAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCS 384

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
            +     G+ +H+   K        + +AL+ +Y+KCG   DA  VFK    +D  +W  
Sbjct: 385 VLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGS 444

Query: 426 MIGGYVKHGLGEKALEAFRMML--DEGYVPDEITFVVVLSACSHMGLIEEG-KKHFSSIK 482
           +I G  K+G  ++AL+ F  M   D+   PD      V +AC+ +  +  G + H S IK
Sbjct: 445 LISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIK 504

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
              G+   +   + +ID+  + G   E+   +  +  T N + W +++ +C    N+   
Sbjct: 505 T--GLVLNVFVGSSLIDLYSKCG-LPEMALKVFTSMSTENMVAWNSMI-SCYSRNNL--- 557

Query: 543 EKDAEKLLELEPKMESNYVFPSDISAT 569
               E  ++L   M S  +FP  +S T
Sbjct: 558 ---PELSIDLFNLMLSQGIFPDSVSIT 581



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 114/239 (47%), Gaps = 2/239 (0%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E+A +VF SM   N+V+WN++++ Y+ +   +  + LF  M          S+++VL   
Sbjct: 528 EMALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAI 587

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           +++  +  G+ +H   +RLG   D  L  +L+DMY KCG +  A  +F +++   ++ W 
Sbjct: 588 SSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWN 647

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK- 180
            +I      G C  A  +F+ M+++   P+     SL+ A   +G    G++I   + + 
Sbjct: 648 LMIYGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQD 707

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALFSRFQDYESPDQGL 238
           YG E +      +V +    G +       +A+    DS  W  L S  + + + + G+
Sbjct: 708 YGIEPNMEHYANMVDLLGRAGLLEEAYSFIKAMPIEADSSIWLCLLSASRTHHNVELGI 766


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 177/491 (36%), Positives = 269/491 (54%), Gaps = 28/491 (5%)

Query: 136 AAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVS 195
           A   +  MR+  ++ + F++ S+++A ++    R G+ IH    K G  SD  V NAL+ 
Sbjct: 93  ALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQ 152

Query: 196 MYMENGRVSYGSRVFEAIAHQDSVSWNAL-------------------------FSRFQD 230
           MY E G +     +F+ ++ +D VSW+ +                         + R  D
Sbjct: 153 MYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCND 212

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
            E   +G R+F +M+ +   PN  T + ++ +C  +  V  GK+LHA+ +++    +  +
Sbjct: 213 LE---EGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLAL 269

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
            T+LVDMY K G +  A   FDS+ NKD+  +TA+I++YAQA   + A + F +MR  G+
Sbjct: 270 ATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGV 329

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
           + NE T+ S L+ C+    L  G+  H+   K G  +D+ + TAL+ MYAKCG I  A+ 
Sbjct: 330 RPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQR 389

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           +F  +  RD  +WN+M+ GY  HG GEKAL+ F  M   G  P++ITF+  L ACSH GL
Sbjct: 390 LFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGL 449

Query: 471 IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
           + EGK  F  +   +G+ P ++H+ CM+D+LGRAG   E    I    +TPN  +W  +L
Sbjct: 450 VVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAML 509

Query: 531 GACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKK 590
            AC  H N  + E  A +LL LEP+     V  S+I A   RWND +G+R  +   GIKK
Sbjct: 510 AACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKK 569

Query: 591 EPSCSWIEVDG 601
           EP  S IEV+G
Sbjct: 570 EPGMSSIEVNG 580



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 105/431 (24%), Positives = 199/431 (46%), Gaps = 27/431 (6%)

Query: 36  MHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDM 95
           ++ +  M+ ++ +   F + +VLK  +     + G+ +H  +++ G   D F+  +L+ M
Sbjct: 94  LNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQM 153

Query: 96  YSKCGLADNALKVFYRIKDPDVVAWGAIITC-------LDQQGCC--------------- 133
           YS+CG   +A  +F ++ + DVV+W  +I           Q+                  
Sbjct: 154 YSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDL 213

Query: 134 QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNAL 193
           +E  ++F  M E +V PN   + SL+ +    G  + G+ +HA I + GF     +  AL
Sbjct: 214 EEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATAL 273

Query: 194 VSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
           V MY + G +     +F+++ ++D ++W A+ S +      D   ++F QM   G +PN 
Sbjct: 274 VDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNE 333

Query: 254 CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
            T + +L  C+    +  GK  HA+  K  ++ + ++ T+L+DMY K G +  A   F  
Sbjct: 334 LTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSE 393

Query: 314 LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG 373
             ++D+  +  ++  Y   G  E ALK F +M   G+K N+ T    L+ CS    +  G
Sbjct: 394 AIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEG 453

Query: 374 R-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DTASWNMMIGGYV 431
           + L   +    G +  +     +V +  + G +D+A  + +   +  + A W  M+    
Sbjct: 454 KGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACK 513

Query: 432 KH---GLGEKA 439
            H    +GE A
Sbjct: 514 IHKNSNMGELA 524



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 156/312 (50%), Gaps = 7/312 (2%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           +F    + ++VSW A++ GY    D ++   LF  M +     +  ++ +++      G 
Sbjct: 188 LFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGA 247

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           ++ G+ +HA  +R G  +   L+ +LVDMY KCG   +A  +F  +K+ DV+ W A+I+ 
Sbjct: 248 VQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISA 307

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             Q  C   A ++F  MR++ V+PN+  + SL+      G    G+  HA I K G E D
Sbjct: 308 YAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVD 367

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
            ++  AL+ MY + G +S   R+F     +D  +WN + + +  +   ++ L++F +M  
Sbjct: 368 VILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMET 427

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS----LVDMYDKSG 302
            G KPN  TFI  L ACS    V  GK L    I    D   V        +VD+  ++G
Sbjct: 428 LGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIH---DFGLVPKVEHYGCMVDLLGRAG 484

Query: 303 CLEDAGVAFDSL 314
            L++A    +S+
Sbjct: 485 LLDEAYKMIESM 496



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 121/259 (46%), Gaps = 4/259 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F SM   +V++W A+++ YA++        LF  M+D   + ++ ++ ++L   A 
Sbjct: 286 ARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAV 345

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +G +  G+  HA   + G  +D  L  +L+DMY+KCG    A ++F    D D+  W  +
Sbjct: 346 NGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVM 405

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI-HAVICKYG 182
           +      G  ++A K+F  M    VKPN       + A +  G    G+ +   +I  +G
Sbjct: 406 MAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFG 465

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS-WNALFSRFQDYESPDQGLRIF 241
                     +V +    G +    ++ E++    +++ W A+ +  + +++ + G    
Sbjct: 466 LVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSNMGELAA 525

Query: 242 YQMLLKGFKPNMCTFIVIL 260
            ++L    +P  C + V++
Sbjct: 526 RELL--ALEPQNCGYKVLM 542


>gi|413920851|gb|AFW60783.1| hypothetical protein ZEAMMB73_487264 [Zea mays]
          Length = 770

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 175/548 (31%), Positives = 289/548 (52%), Gaps = 12/548 (2%)

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +G +   + +H   ++ G + D F++ SLV+ Y +CG + +A  +F ++ + +VV W A+
Sbjct: 91  TGSLGGARALHGHMVKTGTSADMFVATSLVNAYMRCGASQDARSLFDQMPEKNVVTWTAL 150

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           IT         EA ++F  M E+   P+ + L +++ A + + +   G  +H    KY  
Sbjct: 151 ITGYTVNSQLLEALEVFVEMLEAGRYPSHYTLGAMLNACSASNNADLGSQVHGYTIKYRA 210

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR-FQDYESPDQGLRIFY 242
            S T +GN+L  MY ++G +    R F  +  ++ ++W  + S   +D    + GL +F 
Sbjct: 211 LSITSIGNSLCRMYAKSGSLESAMRAFRMVPDKNVITWTTMISACAEDENYTELGLTLFL 270

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            ML+ G  PN  T   ++  C +  D+  GKQ+ A   K     N  V  S + +Y + G
Sbjct: 271 DMLMDGVLPNEFTLTSVMSLCGTRLDLNLGKQVQAFCFKIGCQTNIPVKNSTMYLYLRKG 330

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAE-----------MALKCFRKMRLEGIK 351
             ++A   F+ + +  +  + A+I+ YAQ  E              ALK FR ++   +K
Sbjct: 331 ETDEAMRFFEEMDDVSIITWNAMISGYAQIMETAKDDLHARSRGFQALKVFRNLKRSAMK 390

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            + FT +S L+ CS +  L  G  +H+  +KTG L D+ V++ALV MY KCG I+DA   
Sbjct: 391 PDLFTFSSILSVCSSMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEDATKA 450

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F   ++R   +W  MI GY +HG  ++A++ F  M   G  P+EITFV VLSACS+ GL 
Sbjct: 451 FVEMSIRTLVTWTSMISGYSQHGRPQEAIQLFEDMRFAGVRPNEITFVCVLSACSYAGLA 510

Query: 472 EEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLG 531
           E+ + +F  +K+ Y I P + H+ CM+D+  R G+  +   FI  T   PN  +W +L+ 
Sbjct: 511 EKAEHYFDMMKEEYKIEPIVDHYGCMVDMFVRLGRLDDAFAFIRRTGFEPNEAIWSSLVA 570

Query: 532 ACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
            C  HGN+EL    A++L+EL PK    YV   ++  +  RW+D + VR L+  +G+   
Sbjct: 571 GCRSHGNMELAFYAADRLIELRPKGIETYVLLLNMYISNERWHDVARVRKLMKQEGLGVL 630

Query: 592 PSCSWIEV 599
              SWI +
Sbjct: 631 MDRSWITI 638



 Score =  211 bits (538), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 138/485 (28%), Positives = 233/485 (48%), Gaps = 37/485 (7%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F  MPE NVV+W AL+ GY  +    + + +F  M +  +  S ++L  +L   + 
Sbjct: 132 ARSLFDQMPEKNVVTWTALITGYTVNSQLLEALEVFVEMLEAGRYPSHYTLGAMLNACSA 191

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           S     G  VH   I+        +  SL  MY+K G  ++A++ F  + D +V+ W  +
Sbjct: 192 SNNADLGSQVHGYTIKYRALSITSIGNSLCRMYAKSGSLESAMRAFRMVPDKNVITWTTM 251

Query: 124 IT-CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I+ C + +   +    +F  M    V PN+F LTS++       D   G+ + A   K G
Sbjct: 252 ISACAEDENYTELGLTLFLDMLMDGVLPNEFTLTSVMSLCGTRLDLNLGKQVQAFCFKIG 311

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF-QDYESPD------ 235
            +++  V N+ + +Y+  G      R FE +     ++WNA+ S + Q  E+        
Sbjct: 312 CQTNIPVKNSTMYLYLRKGETDEAMRFFEEMDDVSIITWNAMISGYAQIMETAKDDLHAR 371

Query: 236 ----QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
               Q L++F  +     KP++ TF  IL  CSS+  +  G+Q+HA TIK     + VV 
Sbjct: 372 SRGFQALKVFRNLKRSAMKPDLFTFSSILSVCSSMMALEQGEQIHAQTIKTGFLSDVVVN 431

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
           ++LV+MY+K GC+EDA  AF  ++ + L  +T++I+ Y+Q G  + A++ F  MR  G++
Sbjct: 432 SALVNMYNKCGCIEDATKAFVEMSIRTLVTWTSMISGYSQHGRPQEAIQLFEDMRFAGVR 491

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST-----------ALVAMYA 400
            NE T    L+ CS             +A K  H  DM                +V M+ 
Sbjct: 492 PNEITFVCVLSACS----------YAGLAEKAEHYFDMMKEEYKIEPIVDHYGCMVDMFV 541

Query: 401 KCGSIDDAEAVFKGSALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI-TF 458
           + G +DDA A  + +    + A W+ ++ G   HG  E A  A   +++    P  I T+
Sbjct: 542 RLGRLDDAFAFIRRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLIE--LRPKGIETY 599

Query: 459 VVVLS 463
           V++L+
Sbjct: 600 VLLLN 604



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/440 (26%), Positives = 205/440 (46%), Gaps = 26/440 (5%)

Query: 142 LMRE-SSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMEN 200
           ++RE  +V+   +V   L+    ETG      ++H  + K G  +D  V  +LV+ YM  
Sbjct: 69  MLREGKTVQSAMYV--PLLHVCVETGSLGGARALHGHMVKTGTSADMFVATSLVNAYMRC 126

Query: 201 GRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVIL 260
           G       +F+ +  ++ V+W AL + +       + L +F +ML  G  P+  T   +L
Sbjct: 127 GASQDARSLFDQMPEKNVVTWTALITGYTVNSQLLEALEVFVEMLEAGRYPSHYTLGAML 186

Query: 261 KACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLF 320
            ACS+ ++   G Q+H +TIK+       +G SL  MY KSG LE A  AF  + +K++ 
Sbjct: 187 NACSASNNADLGSQVHGYTIKYRALSITSIGNSLCRMYAKSGSLESAMRAFRMVPDKNVI 246

Query: 321 AYTAIITSYAQ-AGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSI 379
            +T +I++ A+     E+ L  F  M ++G+  NEFTL S ++ C     L  G+ + + 
Sbjct: 247 TWTTMISACAEDENYTELGLTLFLDMLMDGVLPNEFTLTSVMSLCGTRLDLNLGKQVQAF 306

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK------- 432
             K G   ++ V  + + +Y + G  D+A   F+        +WN MI GY +       
Sbjct: 307 CFKIGCQTNIPVKNSTMYLYLRKGETDEAMRFFEEMDDVSIITWNAMISGYAQIMETAKD 366

Query: 433 ----HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGI 487
                  G +AL+ FR +      PD  TF  +LS CS M  +E+G++ H  +IK   G 
Sbjct: 367 DLHARSRGFQALKVFRNLKRSAMKPDLFTFSSILSVCSSMMALEQGEQIHAQTIKT--GF 424

Query: 488 TPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAE 547
              +   + ++++  + G   +      E  +    + W +++   S HG         +
Sbjct: 425 LSDVVVNSALVNMYNKCGCIEDATKAFVEMSIR-TLVTWTSMISGYSQHGR-------PQ 476

Query: 548 KLLELEPKMESNYVFPSDIS 567
           + ++L   M    V P++I+
Sbjct: 477 EAIQLFEDMRFAGVRPNEIT 496



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 161/321 (50%), Gaps = 15/321 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKV-MHLFCSMKDMEKKFSKFSLSTVLK 59
           +E A R F+ +P+ NV++W  +++  AE  +  ++ + LF  M       ++F+L++V+ 
Sbjct: 230 LESAMRAFRMVPDKNVITWTTMISACAEDENYTELGLTLFLDMLMDGVLPNEFTLTSVMS 289

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
                  +  G+ V A   ++GC  +  +  S + +Y + G  D A++ F  + D  ++ 
Sbjct: 290 LCGTRLDLNLGKQVQAFCFKIGCQTNIPVKNSTMYLYLRKGETDEAMRFFEEMDDVSIIT 349

Query: 120 WGAIITCLDQ-----------QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ 168
           W A+I+   Q           +    +A K+F  ++ S++KP+ F  +S++   +     
Sbjct: 350 WNAMISGYAQIMETAKDDLHARSRGFQALKVFRNLKRSAMKPDLFTFSSILSVCSSMMAL 409

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228
             GE IHA   K GF SD +V +ALV+MY + G +   ++ F  ++ +  V+W ++ S +
Sbjct: 410 EQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEDATKAFVEMSIRTLVTWTSMISGY 469

Query: 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH 288
             +  P + +++F  M   G +PN  TF+ +L AC S + +    + +   +K       
Sbjct: 470 SQHGRPQEAIQLFEDMRFAGVRPNEITFVCVLSAC-SYAGLAEKAEHYFDMMKEEYKIEP 528

Query: 289 VVGT--SLVDMYDKSGCLEDA 307
           +V     +VDM+ + G L+DA
Sbjct: 529 IVDHYGCMVDMFVRLGRLDDA 549



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/135 (21%), Positives = 63/135 (46%), Gaps = 6/135 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A + F  M    +V+W ++++GY++ G  Q+ + LF  M+    + ++ +   VL  
Sbjct: 444 IEDATKAFVEMSIRTLVTWTSMISGYSQHGRPQEAIQLFEDMRFAGVRPNEITFVCVLSA 503

Query: 61  FANSGYIKAGQVVHAM---AIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPD 116
            + +G  +  +    M     ++   +D +  C +VDM+ + G  D+A     R   +P+
Sbjct: 504 CSYAGLAEKAEHYFDMMKEEYKIEPIVDHY-GC-MVDMFVRLGRLDDAFAFIRRTGFEPN 561

Query: 117 VVAWGAIITCLDQQG 131
              W +++      G
Sbjct: 562 EAIWSSLVAGCRSHG 576


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 181/602 (30%), Positives = 319/602 (52%), Gaps = 6/602 (0%)

Query: 1   MELAKRVFKSMPE--LNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVL 58
           ++ A RVF+ + +   +V SWN++++G  ++G   + + LF  M+      + ++   VL
Sbjct: 215 LDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVL 274

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSC-SLVDMYSKCGLADNALKVFYRIKDPDV 117
           +  A  G +  G+ +HA  ++ G  L+  + C +L+ MY+K G  D+AL+VF +I + D 
Sbjct: 275 QVCAELGLLSLGRELHAALLKCGSELN--IQCNALLVMYAKYGRVDSALRVFGQIAEKDY 332

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           ++W ++++C  Q     EA   F  M +   +P+   + SL  A         G   HA 
Sbjct: 333 ISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREFHAY 392

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
             K    +D  VGN L+ MY++ G +   ++VFE++  +D +SW  + + F       + 
Sbjct: 393 AIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEA 452

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           L +  ++  +G   +      IL+ C  L  +   KQ+H + I++ L  + ++   L+D+
Sbjct: 453 LEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGLL-DLILENRLIDI 511

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y + G  + +   F  +  KD+ ++T++I      G    A+  F +M+   I+ +   L
Sbjct: 512 YGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVAL 571

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
            S L   + +++L  G+ +H   ++    ++  V ++LV MY+ CGS++ A  VF+ +  
Sbjct: 572 VSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFERAKC 631

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           +D   W  MI     HG G++A++ F+ ML  G  PD ++F+ +L ACSH  L+EEGK +
Sbjct: 632 KDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALLYACSHSKLVEEGKHY 691

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
              +   Y + P  +H+AC++DILGR+G+  E   FI    + P + VW  LLGAC  H 
Sbjct: 692 LDIMVSKYRLKPWQEHYACVVDILGRSGQTEEAYEFIKTMPMDPKSAVWCALLGACRVHR 751

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           N  L    A KLLELEP    NY+  S++ A  G+WN+    R  ++ +G++K P+CSWI
Sbjct: 752 NYGLAVVAANKLLELEPDNPGNYILVSNVFAEMGKWNNAKETRTRMAERGLRKNPACSWI 811

Query: 598 EV 599
           E+
Sbjct: 812 EI 813



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 156/570 (27%), Positives = 282/570 (49%), Gaps = 18/570 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSK---FSLSTVLKG 60
           A+R+F  MP   V SWNAL+  Y  SG   + M ++ +M+      S     +L++VLK 
Sbjct: 114 ARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKA 173

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP--DVV 118
               G  + G  VH +A+++G      ++ +L+ MY+KCGL D+AL+VF  ++    DV 
Sbjct: 174 CGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVA 233

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +W ++++   Q G   EA  +F  M+ +    N +   ++++   E G    G  +HA +
Sbjct: 234 SWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAAL 293

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K G E + +  NAL+ MY + GRV    RVF  IA +D +SWN++ S +       + +
Sbjct: 294 LKCGSELN-IQCNALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAI 352

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
             F +ML  GF+P+    + +  A   LS +  G++ HA+ IK  L  +  VG +L+DMY
Sbjct: 353 DFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMY 412

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G +E +   F+S+  +D  ++T I+  +AQ+     AL+   +++ EGI  +   + 
Sbjct: 413 IKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIG 472

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L  C  + +++  + +H  A++ G LLD+ +   L+ +Y +CG  D +  +F+    +
Sbjct: 473 SILETCCGLKSISLLKQVHCYAIRNG-LLDLILENRLIDIYGECGEFDHSLNLFQRVEKK 531

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-H 477
           D  SW  MI     +G    A+  F  M      PD +  V +L A + +  + +GK+ H
Sbjct: 532 DIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQVH 591

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
              I++ + I   +   + ++D+    G            K   + ++W  ++ A   HG
Sbjct: 592 GFLIRRNFPIEGPV--VSSLVDMYSGCGSMNYAIRVFERAK-CKDVVLWTAMINATGMHG 648

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           +        ++ ++L  +M    + P  +S
Sbjct: 649 H-------GKQAIDLFKRMLQTGLTPDHVS 671



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 137/483 (28%), Positives = 229/483 (47%), Gaps = 22/483 (4%)

Query: 70  GQVVHAMAIRLGCAL---DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           G+ VHA A+  G      D FL+  LV MY +CG  D+A ++F  +    V +W A++  
Sbjct: 76  GRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGA 135

Query: 127 LDQQGCCQEAAKIFNLMRESSVK---PNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
               G   EA +++  MR S+     P+   L S+++A    GD RCG  +H +  K G 
Sbjct: 136 YLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGL 195

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAH--QDSVSWNALFSRFQDYESPDQGLRIF 241
           +  TLV NAL+ MY + G +    RVFE +    +D  SWN++ S         + L +F
Sbjct: 196 DKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALF 255

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
             M   GF  N  T + +L+ C+ L  +  G++LHA  +K   + N +   +L+ MY K 
Sbjct: 256 RGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELN-IQCNALLVMYAKY 314

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G ++ A   F  +A KD  ++ ++++ Y Q      A+  F +M   G + +   + S  
Sbjct: 315 GRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLS 374

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           +    ++ L NGR  H+ A+K     D+ V   L+ MY KCGSI+ +  VF+   +RD  
Sbjct: 375 SALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHI 434

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SW  ++  + +     +ALE    +  EG + D +    +L  C        G K  S +
Sbjct: 435 SWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCC-------GLKSISLL 487

Query: 482 KKI--YGITPTIKHFAC---MIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
           K++  Y I   +        +IDI G  G+F    N     +   + + W +++  C+ +
Sbjct: 488 KQVHCYAIRNGLLDLILENRLIDIYGECGEFDHSLNLFQRVE-KKDIVSWTSMINCCTNN 546

Query: 537 GNI 539
           G +
Sbjct: 547 GRL 549


>gi|302817750|ref|XP_002990550.1| hypothetical protein SELMODRAFT_327 [Selaginella moellendorffii]
 gi|300141718|gb|EFJ08427.1| hypothetical protein SELMODRAFT_327 [Selaginella moellendorffii]
          Length = 917

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 177/566 (31%), Positives = 316/566 (55%), Gaps = 11/566 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A   F +M E + +SWN +++G+A++G   + +HLF  M        KF+  +++ G A 
Sbjct: 360 AAAFFSTMVERDAISWNTIISGHAQAGFCDEAVHLFRRMLAEGITPDKFTFISIIDGTAR 419

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++  +++  + +  G  LD FL  +L++M+S+ G    A  +F  +KD D+V W +I
Sbjct: 420 ---MQEAKILSELMVESGVELDVFLVSALINMHSRYGNVREARSLFDDMKDRDIVMWTSI 476

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   Q G   +A     LMR   +  N F L + + A         G+ IH+   + GF
Sbjct: 477 ISSYVQHGSSDDALGCTRLMRLEGLMGNDFTLVTALNACASLTALSEGKLIHSHAIERGF 536

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            +   VGNAL++MY + G +     VF     ++ VSWN + + +   +   + L++F +
Sbjct: 537 AASPAVGNALINMYAKCGCLEEADLVFHQCG-KNLVSWNTIAAAYVQRDKWREALQLFQE 595

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M L+G K +  +F+ +L  CSS S+   G ++H   ++  ++ +H+V T+L++MY  S  
Sbjct: 596 MQLEGLKADKVSFVTVLNGCSSASE---GSKIHNILLETGMESDHIVSTALLNMYTASKS 652

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN- 362
           L++A   F  +  +D+ ++ A+I   A+ G +  A++ F++M+LEG+  ++ +  + LN 
Sbjct: 653 LDEASRIFSRMEFRDIVSWNAMIAGKAEHGLSREAIQMFQRMQLEGVAPDKISFVTVLNA 712

Query: 363 --GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
             G SP ++L   RL+  +    G+  D  V  A+V+M+ + G + +A   F+    RD 
Sbjct: 713 FSGSSP-SSLKQARLVEKLISDQGYETDTIVGNAIVSMFGRSGRLAEARRAFERIRERDA 771

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
           ASWN+++  + +HG  E+AL+ FR M  E   PD IT V VLSACSH GLIEEG  HF+S
Sbjct: 772 ASWNVIVTAHAQHGEVEQALKLFRRMQQESSRPDSITLVSVLSACSHGGLIEEGYYHFTS 831

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + + +GI  + +H+ C++D+L RAG+  + E  + +  +  + ++W  LL AC   G+ +
Sbjct: 832 MGREFGIAGSQEHYGCVVDLLARAGRLDQAEELLRKMPVPASYVLWMTLLSACKVQGDEK 891

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDI 566
             ++ AE+++EL+P+  + YV  S +
Sbjct: 892 RAKRVAERVMELDPRRPAAYVVLSSV 917



 Score =  274 bits (701), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 160/513 (31%), Positives = 280/513 (54%), Gaps = 7/513 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  VF+S+   + VSWN+LL  +A  G  Q+   +F  MK       + +  TVL G
Sbjct: 53  VEDAVTVFQSLDHPSQVSWNSLLAAFARDGQFQQAFQIFQRMKLQGLAPDRITFVTVLDG 112

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              +G +  G+++H   +  G   +  +  SL+ MY KCG  ++A +VF ++   DVV+W
Sbjct: 113 CTATGDLSRGKLLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRVFDKLALQDVVSW 172

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I    Q   C EA ++F+ MR S V PN+    + + A         G+ IH+ + +
Sbjct: 173 TSMIMTYVQHDRCVEALELFHRMRPSGVLPNRITYATAISACAHVESMADGKLIHSQVLE 232

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GFESD +V  A+V+MY + G +     VFE + H ++VSWNA+ +    +    + L  
Sbjct: 233 DGFESDVVVSCAIVNMYGKCGSLEDAREVFERMPHPNTVSWNAIVAACTQHGCCVEALWY 292

Query: 241 FYQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           F +M L+ G  P+  TFI IL ACSS + + FG+ L+   ++   D + +VG  ++ MY 
Sbjct: 293 FQRMQLQGGSTPDKVTFITILNACSSPATLTFGELLYECILQCGYDTHLIVGNCIMTMYS 352

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
             G +++A   F ++  +D  ++  II+ +AQAG  + A+  FR+M  EGI  ++FT  S
Sbjct: 353 SCGRIDNAAAFFSTMVERDAISWNTIISGHAQAGFCDEAVHLFRRMLAEGITPDKFTFIS 412

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            ++G    A +   ++L  + V++G  LD+F+ +AL+ M+++ G++ +A ++F     RD
Sbjct: 413 IIDG---TARMQEAKILSELMVESGVELDVFLVSALINMHSRYGNVREARSLFDDMKDRD 469

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HF 478
              W  +I  YV+HG  + AL   R+M  EG + ++ T V  L+AC+ +  + EGK  H 
Sbjct: 470 IVMWTSIISSYVQHGSSDDALGCTRLMRLEGLMGNDFTLVTALNACASLTALSEGKLIHS 529

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIE 511
            +I++ +  +P + +   +I++  + G   E +
Sbjct: 530 HAIERGFAASPAVGN--ALINMYAKCGCLEEAD 560



 Score =  241 bits (615), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 141/508 (27%), Positives = 261/508 (51%), Gaps = 7/508 (1%)

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           A    I  G+ VH+         D  +  + + MY KCG  ++A+ VF  +  P  V+W 
Sbjct: 13  AKKSAIAEGRFVHSRVEASEFRRDDLVQNATIHMYGKCGCVEDAVTVFQSLDHPSQVSWN 72

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           +++    + G  Q+A +IF  M+   + P++    +++   T TGD   G+ +H  + + 
Sbjct: 73  SLLAAFARDGQFQQAFQIFQRMKLQGLAPDRITFVTVLDGCTATGDLSRGKLLHGFVLEA 132

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G E + +VG +L+ MY + G V    RVF+ +A QD VSW ++   +  ++   + L +F
Sbjct: 133 GLERNVMVGTSLIKMYGKCGCVEDARRVFDKLALQDVVSWTSMIMTYVQHDRCVEALELF 192

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
           ++M   G  PN  T+   + AC+ +  +  GK +H+  ++   + + VV  ++V+MY K 
Sbjct: 193 HRMRPSGVLPNRITYATAISACAHVESMADGKLIHSQVLEDGFESDVVVSCAIVNMYGKC 252

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS-NEFTLASC 360
           G LEDA   F+ + + +  ++ AI+ +  Q G    AL  F++M+L+G  + ++ T  + 
Sbjct: 253 GSLEDAREVFERMPHPNTVSWNAIVAACTQHGCCVEALWYFQRMQLQGGSTPDKVTFITI 312

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           LN CS  ATL  G LL+   ++ G+   + V   ++ MY+ CG ID+A A F     RD 
Sbjct: 313 LNACSSPATLTFGELLYECILQCGYDTHLIVGNCIMTMYSSCGRIDNAAAFFSTMVERDA 372

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SWN +I G+ + G  ++A+  FR ML EG  PD+ TF+ ++   + M    +  K  S 
Sbjct: 373 ISWNTIISGHAQAGFCDEAVHLFRRMLAEGITPDKFTFISIIDGTARM----QEAKILSE 428

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +    G+   +   + +I++  R G   E  +   + K   + ++W +++ +   HG+ +
Sbjct: 429 LMVESGVELDVFLVSALINMHSRYGNVREARSLFDDMK-DRDIVMWTSIISSYVQHGSSD 487

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISA 568
            D     +L+ LE  M +++   + ++A
Sbjct: 488 -DALGCTRLMRLEGLMGNDFTLVTALNA 514



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 153/283 (54%), Gaps = 2/283 (0%)

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
           TF+ +L  C+  S +  G+ +H+         + +V  + + MY K GC+EDA   F SL
Sbjct: 4   TFLALLGLCAKKSAIAEGRFVHSRVEASEFRRDDLVQNATIHMYGKCGCVEDAVTVFQSL 63

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
            +    ++ +++ ++A+ G+ + A + F++M+L+G+  +  T  + L+GC+    L+ G+
Sbjct: 64  DHPSQVSWNSLLAAFARDGQFQQAFQIFQRMKLQGLAPDRITFVTVLDGCTATGDLSRGK 123

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
           LLH   ++ G   ++ V T+L+ MY KCG ++DA  VF   AL+D  SW  MI  YV+H 
Sbjct: 124 LLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRVFDKLALQDVVSWTSMIMTYVQHD 183

Query: 435 LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHF 494
              +ALE F  M   G +P+ IT+   +SAC+H+  + +GK   S + +  G    +   
Sbjct: 184 RCVEALELFHRMRPSGVLPNRITYATAISACAHVESMADGKLIHSQVLE-DGFESDVVVS 242

Query: 495 ACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
             ++++ G+ G   +    + E    PN + W  ++ AC+ HG
Sbjct: 243 CAIVNMYGKCGSLEDARE-VFERMPHPNTVSWNAIVAACTQHG 284



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 86/168 (51%), Gaps = 2/168 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A R+F  M   ++VSWNA++ G AE G  ++ + +F  M+       K S  TVL  
Sbjct: 653 LDEASRIFSRMEFRDIVSWNAMIAGKAEHGLSREAIQMFQRMQLEGVAPDKISFVTVLNA 712

Query: 61  FANS--GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
           F+ S    +K  ++V  +    G   D  +  ++V M+ + G    A + F RI++ D  
Sbjct: 713 FSGSSPSSLKQARLVEKLISDQGYETDTIVGNAIVSMFGRSGRLAEARRAFERIRERDAA 772

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
           +W  I+T   Q G  ++A K+F  M++ S +P+   L S++ A +  G
Sbjct: 773 SWNVIVTAHAQHGEVEQALKLFRRMQQESSRPDSITLVSVLSACSHGG 820


>gi|449438472|ref|XP_004137012.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Cucumis sativus]
 gi|449493172|ref|XP_004159212.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Cucumis sativus]
          Length = 605

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 184/577 (31%), Positives = 324/577 (56%), Gaps = 10/577 (1%)

Query: 26  YAESGDGQKVMHLFCSMKDMEKKFSKFSL-STVLKGFANSGYIKAGQVVHAMAIRLGCAL 84
           + +SG     +HL  S+   + + +K  L +++L+          G+  HA  ++ G   
Sbjct: 34  FCKSGLLNDALHLLNSIDLYDSRINKPLLYASLLQTCIKVDSFTRGRQFHAHVVKSGLET 93

Query: 85  DKFLSCSLVDMYSKCGLADNAL--KVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNL 142
           D+F+  SL+ +Y K G +D+ L  +VF  +   DVV+W ++IT   ++G    A ++F  
Sbjct: 94  DRFVGNSLLSLYFKLG-SDSLLTRRVFDGLFVKDVVSWASMITGYVREGKSGIAIELFWD 152

Query: 143 MRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGR 202
           M +S ++PN F L+++++A +E G+   G+  H V+ + GF+S+ ++ ++L+ MY  N  
Sbjct: 153 MLDSGIEPNGFTLSAVIKACSEIGNLVLGKCFHGVVVRRGFDSNPVILSSLIDMYGRNSV 212

Query: 203 VSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY-QMLLKGFKPNMCTFIVILK 261
            S   ++F+ +   D V W  + S F   +  ++ L  FY +       P+  TF  +L 
Sbjct: 213 SSDARQLFDELLEPDPVCWTTVISAFTRNDLYEEALGFFYLKHRAHRLCPDNYTFGSVLT 272

Query: 262 ACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFA 321
           AC +L  +  G+++HA  I +   GN V  +SLVDMY K G +E +   FD ++N++  +
Sbjct: 273 ACGNLGRLRQGEEIHAKVIAYGFSGNVVTESSLVDMYGKCGAVEKSQRLFDRMSNRNSVS 332

Query: 322 YTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAV 381
           ++A++  Y   G+ E A+  FR+M+    + + ++  + +  C+ +A +  G+ +H   +
Sbjct: 333 WSALLAVYCHNGDYEKAVNLFREMK----EVDLYSFGTVIRACAGLAAVTPGKEIHCQYI 388

Query: 382 KTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALE 441
           + G   D+ V +ALV +YAKCG I+ A  VF     R+  +WN MI G+ ++G    A++
Sbjct: 389 RKGGWRDVIVESALVDLYAKCGCINFAYRVFDRMPTRNLITWNSMIHGFAQNGSSGIAIQ 448

Query: 442 AFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDIL 501
            F  M+ EG  PD I+F+ +L ACSH GL+++ + +F  +   YGI P ++H+ CM+D+L
Sbjct: 449 IFEAMIKEGIKPDCISFIGLLFACSHTGLVDQARHYFDLMTGKYGIKPGVEHYNCMVDLL 508

Query: 502 GRAGKFTEIENFITETKLTPNALVWENLLGACSWH-GNIELDEKDAEKLLELEPKMESNY 560
           GRAG   E EN I   +   ++ +W  LLGAC+    N    E+ A+KL+ELEP+   +Y
Sbjct: 509 GRAGLLEEAENLIENAECRNDSSLWLVLLGACTTTCTNSATAERIAKKLMELEPQCYLSY 568

Query: 561 VFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           V  +++    GRW+D   VR L+ ++ +KK P  SW+
Sbjct: 569 VHLANVYRAVGRWDDAVKVRELMKNRQLKKMPGQSWM 605



 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 118/434 (27%), Positives = 225/434 (51%), Gaps = 15/434 (3%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           L +RVF  +   +VVSW +++ GY   G     + LF  M D   + + F+LS V+K  +
Sbjct: 114 LTRRVFDGLFVKDVVSWASMITGYVREGKSGIAIELFWDMLDSGIEPNGFTLSAVIKACS 173

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
             G +  G+  H + +R G   +  +  SL+DMY +  ++ +A ++F  + +PD V W  
Sbjct: 174 EIGNLVLGKCFHGVVVRRGFDSNPVILSSLIDMYGRNSVSSDARQLFDELLEPDPVCWTT 233

Query: 123 IITCLDQQGCCQEAAKIFNL-MRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           +I+   +    +EA   F L  R   + P+ +   S++ A    G  R GE IHA +  Y
Sbjct: 234 VISAFTRNDLYEEALGFFYLKHRAHRLCPDNYTFGSVLTACGNLGRLRQGEEIHAKVIAY 293

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           GF  + +  ++LV MY + G V    R+F+ +++++SVSW+AL + +      ++ + +F
Sbjct: 294 GFSGNVVTESSLVDMYGKCGAVEKSQRLFDRMSNRNSVSWSALLAVYCHNGDYEKAVNLF 353

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M     + ++ +F  +++AC+ L+ V  GK++H   I+     + +V ++LVD+Y K 
Sbjct: 354 REMK----EVDLYSFGTVIRACAGLAAVTPGKEIHCQYIRKGGWRDVIVESALVDLYAKC 409

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           GC+  A   FD +  ++L  + ++I  +AQ G + +A++ F  M  EGIK +  +    L
Sbjct: 410 GCINFAYRVFDRMPTRNLITWNSMIHGFAQNGSSGIAIQIFEAMIKEGIKPDCISFIGLL 469

Query: 362 NGCSPVATLANGRLLHSIAVKTGHL-----LDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
             CS    +   R  H   + TG       ++ +    +V +  + G +++AE + + + 
Sbjct: 470 FACSHTGLVDQAR--HYFDLMTGKYGIKPGVEHY--NCMVDLLGRAGLLEEAENLIENAE 525

Query: 417 LR-DTASWNMMIGG 429
            R D++ W +++G 
Sbjct: 526 CRNDSSLWLVLLGA 539



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 110/228 (48%), Gaps = 8/228 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E ++R+F  M   N VSW+ALL  Y  +GD +K ++LF  MK+++     +S  TV++ 
Sbjct: 315 VEKSQRLFDRMSNRNSVSWSALLAVYCHNGDYEKAVNLFREMKEVD----LYSFGTVIRA 370

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    +  G+ +H   IR G   D  +  +LVD+Y+KCG  + A +VF R+   +++ W
Sbjct: 371 CAGLAAVTPGKEIHCQYIRKGGWRDVIVESALVDLYAKCGCINFAYRVFDRMPTRNLITW 430

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG--DQRCGESIHAVI 178
            ++I    Q G    A +IF  M +  +KP+      L+ A + TG  DQ        + 
Sbjct: 431 NSMIHGFAQNGSSGIAIQIFEAMIKEGIKPDCISFIGLLFACSHTGLVDQ-ARHYFDLMT 489

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFE-AIAHQDSVSWNALF 225
            KYG +      N +V +    G +     + E A    DS  W  L 
Sbjct: 490 GKYGIKPGVEHYNCMVDLLGRAGLLEEAENLIENAECRNDSSLWLVLL 537


>gi|90399180|emb|CAJ86042.1| H0723C07.12 [Oryza sativa Indica Group]
          Length = 886

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 180/550 (32%), Positives = 294/550 (53%), Gaps = 5/550 (0%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
           ++ +L+  A    ++ G  +HA  ++LG   D  L+ +L+DMY+KCG    A +VF  + 
Sbjct: 203 IADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMP 262

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES 173
           + +VV+W A++      G  +E  ++F  MR S   PN+F L++ ++A    G  R G  
Sbjct: 263 ERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACG--GGTRAGVQ 320

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           IH V  + GFE   +V N+LV MY +        RVF+ I  ++  +WN++ S +     
Sbjct: 321 IHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQ 380

Query: 234 PDQGLRIFYQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLD--GNHVV 290
               L +F +M  +   +P+  TF  +LKACS L     G Q+HA      +    N ++
Sbjct: 381 GRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAIL 440

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
             +L+D+Y K   L  A   FD L  ++   +T +I  +AQ G+ + A+  FR+    G+
Sbjct: 441 AGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGV 500

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
           +++   L+S +   +  A +  G+ +H    KT   LD+ V+ +LV MY KCG   +A  
Sbjct: 501 RADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGR 560

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
            F+    R+  SW  MI G  KHG G +A++ F  M  EG   DE+ ++ +LSACSH GL
Sbjct: 561 RFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSGL 620

Query: 471 IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
           ++E +++FS I +   + P  +H+ACM+D+LGRAG+  E +  I    + P   VW+ LL
Sbjct: 621 VDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLL 680

Query: 531 GACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKK 590
            AC  H ++ +  +  + LL ++     NYV  S+I A  G W +  G+R  +  +G++K
Sbjct: 681 SACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGAMRRKGLRK 740

Query: 591 EPSCSWIEVD 600
           +  CSW EVD
Sbjct: 741 QGGCSWTEVD 750



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 112/389 (28%), Positives = 188/389 (48%), Gaps = 9/389 (2%)

Query: 154 VLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAI 213
           ++  L+RA+      R G  +HA + K GF SDT++ N L+ MY + G++     VF+ +
Sbjct: 202 MIADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGM 261

Query: 214 AHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGK 273
             ++ VSW AL   F  +    + LR+F +M   G  PN  T    LKAC   +  G   
Sbjct: 262 PERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGGGTRAGV-- 319

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
           Q+H   ++   +G+ VV  SLV MY K     DA   FD + +++L  + ++I+ YA AG
Sbjct: 320 QIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAG 379

Query: 334 EAEMALKCFRKM-RLEGIKSNEFTLASCLNGCSPVATLANGRLLH-SIAVK-TGHLLDMF 390
           +   +L  FR+M R    + +EFT AS L  CS +     G  +H ++AV+      +  
Sbjct: 380 QGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAI 439

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
           ++ AL+ +Y KC  +  A  VF G   R+   W  +I G+ + G  ++A+  FR     G
Sbjct: 440 LAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSG 499

Query: 451 YVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTE 509
              D      V++  +   L+E+GK+ H  + K   G+  ++ +   ++D+  + G   E
Sbjct: 500 VRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVAN--SLVDMYLKCGLTGE 557

Query: 510 IENFITETKLTPNALVWENLLGACSWHGN 538
                 E     N + W  ++     HG+
Sbjct: 558 AGRRFREMP-ARNVVSWTAMINGVGKHGH 585



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 184/368 (50%), Gaps = 5/368 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + +A  VF  MPE NVVSW AL+ G+   G+ ++ + LF  M+      ++F+LS  LK 
Sbjct: 251 LHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLK- 309

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A  G  +AG  +H + +R G      ++ SLV MYSK     +A +VF  I   ++  W
Sbjct: 310 -ACGGGTRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATW 368

Query: 121 GAIITCLDQQGCCQEAAKIFNLM-RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            ++I+     G  +++  +F  M R    +P++F   SL++A +  G  R G  +HA + 
Sbjct: 369 NSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMA 428

Query: 180 KYGFE--SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
             G    S+ ++  AL+ +Y++  R+    +VF+ +  ++++ W  +           + 
Sbjct: 429 VRGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEA 488

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           + +F +    G + +      ++   +  + V  GKQ+H +T K     +  V  SLVDM
Sbjct: 489 MCLFRRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDM 548

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K G   +AG  F  +  +++ ++TA+I    + G    A+  F +M+ EG++++E   
Sbjct: 549 YLKCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAY 608

Query: 358 ASCLNGCS 365
            + L+ CS
Sbjct: 609 LALLSACS 616



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 36/64 (56%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A R F+ MP  NVVSW A++NG  + G G++ + LF  M+    +  + +   +L   ++
Sbjct: 558 AGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSH 617

Query: 64  SGYI 67
           SG +
Sbjct: 618 SGLV 621


>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Vitis vinifera]
          Length = 847

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 193/681 (28%), Positives = 345/681 (50%), Gaps = 86/681 (12%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  +F  MPE N+VSWN L++    +G  QK + ++  M       + F+L++VL  
Sbjct: 87  LEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYRMSREGFVPTHFTLASVLSA 146

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 ++ G+  H ++I++G   + ++  +L+ MY+KC    +A++ F  + +P+ V++
Sbjct: 147 CGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSF 206

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE-------- 172
            A++  L       EA ++F LM  + +  +   L+S++   +  G   CGE        
Sbjct: 207 TAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGG---CGEFGLHDSND 263

Query: 173 ---------SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNA 223
                     +H +  K+GFESD  + N+L+ MY +NG +     +F  +     VSWN 
Sbjct: 264 VLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNV 323

Query: 224 LFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHA------ 277
           + + +       + +    +M   GF+P+  T++ +L AC    D+  G+Q+        
Sbjct: 324 MIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSSPS 383

Query: 278 ----HTI--KHSLDGNH-----------------------VVGTSLVDMYDKSGCLEDAG 308
               +TI   +S + NH                       ++ +SL  M    G  +   
Sbjct: 384 LSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHA 443

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKC--------------------------- 341
           V+  ++   D++  + +I  Y++ G+ EMA +                            
Sbjct: 444 VSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKE 503

Query: 342 ----FRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVA 397
               F+KMR +G+  ++F+ A+ L+ C+ +++L+ GR +HS   + G++ D FV +AL+ 
Sbjct: 504 AFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALID 563

Query: 398 MYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEIT 457
           MY+KCG +D A  VF     ++T +WN MI GY ++G G++A+  +  M+  G  PD IT
Sbjct: 564 MYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGIT 623

Query: 458 FVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET 517
           FV VL+ACSH GL++ G K F+S+++ +G+ P + H+ C+ID LGRAG+  E E  I + 
Sbjct: 624 FVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKM 683

Query: 518 KLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFS 577
               + ++WE LL +C  + ++ L  + AE+L  L+P+  + YV  ++I ++ GRW+D  
Sbjct: 684 PCKYDPIIWEVLLSSCRVYADVSLARRAAEELFHLDPQNSAPYVLLANIYSSLGRWDDAK 743

Query: 578 GVRALLSSQGIKKEPSCSWIE 598
            VR L+S   + K+P  SWIE
Sbjct: 744 AVRELMSYNQVVKDPGYSWIE 764



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 171/372 (45%), Gaps = 45/372 (12%)

Query: 155 LTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA 214
           L SL++   +      G+ IHA + +     DT + N L+  Y +   +    R+F+ + 
Sbjct: 8   LASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMP 67

Query: 215 HQDS-------------------------------VSWNALFSRFQDYESPDQGLRIFYQ 243
            +D                                VSWN L S         + L ++Y+
Sbjct: 68  KRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYR 127

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +GF P   T   +L AC +L DV  G++ H  +IK  LD N  VG +L+ MY K  C
Sbjct: 128 MSREGFVPTHFTLASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRC 187

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           + DA  AF  +   +  ++TA++   A + +   A + FR M    I  +  +L+S L  
Sbjct: 188 IGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGV 247

Query: 364 CSP--------------VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           CS               +++  +G+ +H + +K G   D+ ++ +L+ MYAK G++D AE
Sbjct: 248 CSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAE 307

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
            +F         SWN+MI GY +     KA+E  + M   G+ PDEIT+V +L AC   G
Sbjct: 308 MIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSG 367

Query: 470 LIEEGKKHFSSI 481
            IE G++ F  +
Sbjct: 368 DIEAGRQMFDGM 379



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 126/545 (23%), Positives = 227/545 (41%), Gaps = 91/545 (16%)

Query: 69  AGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI----- 123
           AG+++HA  +R   + D FLS  L++ Y+KC   D + ++F ++   D+  W AI     
Sbjct: 23  AGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYC 82

Query: 124 --------------------------ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTS 157
                                     I+ L + G  Q+A  ++  M      P  F L S
Sbjct: 83  KASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYRMSREGFVPTHFTLAS 142

Query: 158 LVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQD 217
           ++ A     D  CG   H +  K G +++  VGNAL+ MY +   +    + F  +   +
Sbjct: 143 VLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPN 202

Query: 218 SVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSS------------ 265
            VS+ A+     D +  ++  R+F  ML      +  +   +L  CS             
Sbjct: 203 EVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSN 262

Query: 266 --LSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYT 323
             LS    G+Q+H  TIKH  + +  +  SL+DMY K+G ++ A + F ++    + ++ 
Sbjct: 263 DVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWN 322

Query: 324 AIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKT 383
            +I  Y Q  ++  A++  ++M+  G + +E T  + L  C                   
Sbjct: 323 VMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVAC------------------- 363

Query: 384 GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF 443
                            K G I+    +F G +    +SWN ++ GY ++   ++A++ F
Sbjct: 364 ----------------IKSGDIEAGRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLF 407

Query: 444 RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILG 502
           R M      PD  T  ++LS+ + M L+E G++ H  S K ++     I   + +I +  
Sbjct: 408 REMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVF--RTDIYLASGLIGMYS 465

Query: 503 RAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVF 562
           + GK  E+   I +     + + W +++   S      L+  D E     + KM    +F
Sbjct: 466 KCGK-VEMAKRIFDRIAELDIVCWNSMMAGLS------LNSLDKEAFTFFK-KMREKGMF 517

Query: 563 PSDIS 567
           PS  S
Sbjct: 518 PSQFS 522



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 32/158 (20%)

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
           LAS L  C        G+L+H+  +++    D F+S  L+  YAKC +ID +  +F    
Sbjct: 8   LASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMP 67

Query: 417 LRDTASWNMMIGGYVK-------------------------------HGLGEKALEAFRM 445
            RD  +WN ++G Y K                               +G  +KAL  +  
Sbjct: 68  KRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYR 127

Query: 446 MLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK 482
           M  EG+VP   T   VLSAC  +  +E G++ H  SIK
Sbjct: 128 MSREGFVPTHFTLASVLSACGALVDVECGRRCHGISIK 165


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 187/603 (31%), Positives = 315/603 (52%), Gaps = 29/603 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A+ +F S P  N  +W  ++  +A +G     + LF +M        + +++TVL  
Sbjct: 304 LPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLN- 362

Query: 61  FANSGYIKAGQV--VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
                 +    V  +H  AI+ G     F+  +L+D Y K GL   A +VF  + D D V
Sbjct: 363 ------LPGCTVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAV 416

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRES--SVKPNQFVLTSLVRATTETGDQRCGESIHA 176
            + A++    ++G   +A ++F  MR +  S  P   +  S  R+ + +           
Sbjct: 417 TYNAMMMGCSKEGLHTQALQLFAAMRRAGYSRHPLHLLQYSHSRSRSTS----------- 465

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
           V+       +  V N+L+  Y +   +    R+F+ +  +D+VS+N + + +   +    
Sbjct: 466 VL-------NVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAAT 518

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            LR+F +M   GF   +  +  +L    SL DV  GKQ+HA  +   L    ++G +L+D
Sbjct: 519 VLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALID 578

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           MY K G L+ A   F + + K   ++TA+IT Y Q G+ E AL+ F  MR  G++ +  T
Sbjct: 579 MYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRAT 638

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
            +S +   S +A +  GR LHS  +++G+   +F  + LV MYAKCG +D+A   F    
Sbjct: 639 FSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMP 698

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            R++ SWN +I  Y  +G  + A++ F  ML  G+ PD +TF+ VL+ACSH GL +E  K
Sbjct: 699 ERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMK 758

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
           +F  +K  Y I+P  +H+AC+ID LGR G F++++  + E     + ++W ++L +C  H
Sbjct: 759 YFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIH 818

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSW 596
           GN EL    A+KL  +EP   + YV  S+I A  G+W D + V+ ++  +G++KE   SW
Sbjct: 819 GNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSW 878

Query: 597 IEV 599
           +E+
Sbjct: 879 VEI 881



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 40/76 (52%)

Query: 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML 447
           ++F    +++ Y+  G +  A+ +F  S  R+  +W +M+  +   G    AL  FR ML
Sbjct: 287 NIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAML 346

Query: 448 DEGYVPDEITFVVVLS 463
            EG +PD +T   VL+
Sbjct: 347 GEGVIPDRVTVTTVLN 362


>gi|449451649|ref|XP_004143574.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
 gi|449516723|ref|XP_004165396.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 174/585 (29%), Positives = 303/585 (51%), Gaps = 2/585 (0%)

Query: 19  WNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAI 78
           WN+ + G    G+  K + LF  +K    + + F+   + K  A   ++   Q++H   +
Sbjct: 20  WNSSIRGAVNQGNASKALALFHQLKLNGLQPNNFTFPFLSKACAKLSHLTNSQIIHTHVV 79

Query: 79  RLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAK 138
           +     D ++  ++VDMY KCG  D+A  +F ++   ++ +W A+I    Q G       
Sbjct: 80  KSPFYSDIYVQTAMVDMYVKCGKVDDAYNLFDKMPVRNIASWNAMIIGFSQIGSLDRVFN 139

Query: 139 IFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYM 198
           +F  MR    +P+   +  L RA       R  +++HA+  + G ++DT V N  ++ Y 
Sbjct: 140 LFMGMRLVGTRPDAATVIGLTRAVISAKSLRFLKAVHAIGIETGLDADTSVSNTWIAAYS 199

Query: 199 ENGRVSYGSRVFEAIAH--QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTF 256
           + G +     VF  I    + SVSWN+L + +  +      ++ +  +L  GFKP+  T 
Sbjct: 200 KCGELQLAKMVFHGIQKTARSSVSWNSLIACYAHFGKYVDAVKSYKGLLCDGFKPDASTI 259

Query: 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
           I +L +C     + +G  +H H  +   D +  +  +L+ MY + G +  A + FD ++ 
Sbjct: 260 ISLLSSCQQPEALIYGFLIHGHGFQLGCDSDISLINTLISMYSRCGDISSATILFDGMSI 319

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL 376
           +   ++TA+I+ Y++ G  + AL  F  M   G K +  T+ S ++GC     L  G  +
Sbjct: 320 RTCVSWTAMISGYSEVGRVDDALVLFNAMEETGEKPDIVTVLSLISGCGKTGALGLGHWI 379

Query: 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
            + A       D+ V  AL+ MYAKCGS++DA  +F     R   SW  MI     +G  
Sbjct: 380 DNYASLHELKKDVVVCNALIDMYAKCGSLNDAREIFYSLPNRTVVSWTAMIAACALNGEF 439

Query: 437 EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFAC 496
            +AL+ F ++ + G  P+ ITF+ VL AC H G +E+G++ F  + + YGI P + H++C
Sbjct: 440 REALDLFSLLSESGIEPNNITFLAVLQACCHGGYLEKGRECFMMMTERYGINPGLDHYSC 499

Query: 497 MIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKM 556
           MID+LGR GK  E    I +  + P+  +W  LLGAC  H N+E+ E  +  L EL+P++
Sbjct: 500 MIDLLGRKGKLIEALEVIQDMPMKPDEGIWGALLGACKIHNNMEIGEYVSRYLFELQPRV 559

Query: 557 ESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
             ++V  ++I A+ GRW++ + +R  + S  ++K P  S ++V+G
Sbjct: 560 AVSFVEMANIYASVGRWDEVAAMRKTMRSNQMRKSPGKSVVQVNG 604



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 123/453 (27%), Positives = 209/453 (46%), Gaps = 23/453 (5%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A  +F  MP  N+ SWNA++ G+++ G   +V +LF  M+ +  +    ++  + +   +
Sbjct: 106 AYNLFDKMPVRNIASWNAMIIGFSQIGSLDRVFNLFMGMRLVGTRPDAATVIGLTRAVIS 165

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP--DVVAWG 121
           +  ++  + VHA+ I  G   D  +S + +  YSKCG    A  VF+ I+      V+W 
Sbjct: 166 AKSLRFLKAVHAIGIETGLDADTSVSNTWIAAYSKCGELQLAKMVFHGIQKTARSSVSWN 225

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           ++I C    G   +A K +  +     KP+   + SL+ +  +      G  IH    + 
Sbjct: 226 SLIACYAHFGKYVDAVKSYKGLLCDGFKPDASTIISLLSSCQQPEALIYGFLIHGHGFQL 285

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G +SD  + N L+SMY   G +S  + +F+ ++ +  VSW A+ S + +    D  L +F
Sbjct: 286 GCDSDISLINTLISMYSRCGDISSATILFDGMSIRTCVSWTAMISGYSEVGRVDDALVLF 345

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
             M   G KP++ T + ++  C     +G G  +  +   H L  + VV  +L+DMY K 
Sbjct: 346 NAMEETGEKPDIVTVLSLISGCGKTGALGLGHWIDNYASLHELKKDVVVCNALIDMYAKC 405

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G L DA   F SL N+ + ++TA+I + A  GE   AL  F  +   GI+ N  T  + L
Sbjct: 406 GSLNDAREIFYSLPNRTVVSWTAMIAACALNGEFREALDLFSLLSESGIEPNNITFLAVL 465

Query: 362 NGCSPVATLANGR-----LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
             C     L  GR     +     +  G  LD +  + ++ +  + G + +A  V +   
Sbjct: 466 QACCHGGYLEKGRECFMMMTERYGINPG--LDHY--SCMIDLLGRKGKLIEALEVIQDMP 521

Query: 417 LR-DTASW-----------NMMIGGYVKHGLGE 437
           ++ D   W           NM IG YV   L E
Sbjct: 522 MKPDEGIWGALLGACKIHNNMEIGEYVSRYLFE 554


>gi|449439723|ref|XP_004137635.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 769

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 180/534 (33%), Positives = 291/534 (54%), Gaps = 8/534 (1%)

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127
           + G  +HA  ++       F    +++ Y KCG     L++F  + + +VV+W AII   
Sbjct: 232 RHGSAIHAKFLKGFLPFSLFFHNHVLNFYVKCGRLSYGLQLFDEMPERNVVSWSAIIAGF 291

Query: 128 DQQGCCQEAAKIFNLMR-ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
            Q G   EA  +F  M  + ++ PN+F L S + A + T    C   I+A I + G+ S+
Sbjct: 292 VQHGRPNEALSLFGRMHCDGTIMPNEFTLVSALHACSLTQRLICSYQIYAFIVRLGYGSN 351

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD---YESPDQGLRIFYQ 243
             + NA ++  + + ++     VFE+   +D+VSWNA+ + +     +E P    + + +
Sbjct: 352 VFLMNAFLTALIRHEKLLEALEVFESCLSKDTVSWNAMMAGYLQLAYFELP----KFWRR 407

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M L+  KP+  TF  IL   ++LS+   G Q+H   +K     +  VG SL DMY K+  
Sbjct: 408 MNLESVKPDNFTFASILTGLAALSEFRLGLQVHGQLVKSGYGNDICVGNSLCDMYVKNQK 467

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L D   AFD +++ D+ ++T +     Q GE   AL+   +M+  G++ N+FTLA+ LN 
Sbjct: 468 LLDGFKAFDEMSSSDVCSWTQMAAGCLQCGEPMKALEVIYEMKNVGVRLNKFTLATALNS 527

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +A++  G+  H + +K G  +D+ V  AL+ MYAKCG +  A  VF+    R   SW
Sbjct: 528 CANLASIEEGKKFHGLRIKLGTDVDVCVDNALLDMYAKCGCMTSANVVFRSMDERSVVSW 587

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
             MI G+  +G  ++AL+ F  M      P+ ITF+ VL+ACS  G I+E  K+FSS+  
Sbjct: 588 TTMIMGFAHNGQTKEALQIFDEMRKGEAEPNHITFICVLNACSQGGFIDEAWKYFSSMSA 647

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            +GI P+  H+ CM+++LGRAG   E E+ I +    P +LVW+ LLGAC  HG+IE  +
Sbjct: 648 DHGIAPSEDHYVCMVNLLGRAGCIKEAEDLILQMPFQPGSLVWQTLLGACLVHGDIETGK 707

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           + AE  L L+    S Y+  S++ A    W+    +R L+ ++ +KK P  SW+
Sbjct: 708 RAAEHALNLDRNDPSTYILLSNMFAGGDNWDSVGILRELMETRDVKKVPGSSWM 761



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 120/448 (26%), Positives = 209/448 (46%), Gaps = 19/448 (4%)

Query: 6   RVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMK-DMEKKFSKFSLSTVLKGFANS 64
           ++F  MPE NVVSW+A++ G+ + G   + + LF  M  D     ++F+L + L   + +
Sbjct: 271 QLFDEMPERNVVSWSAIIAGFVQHGRPNEALSLFGRMHCDGTIMPNEFTLVSALHACSLT 330

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
             +     ++A  +RLG   + FL  + +    +      AL+VF      D V+W A++
Sbjct: 331 QRLICSYQIYAFIVRLGYGSNVFLMNAFLTALIRHEKLLEALEVFESCLSKDTVSWNAMM 390

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
               Q     E  K +  M   SVKP+ F   S++       + R G  +H  + K G+ 
Sbjct: 391 AGYLQLAYF-ELPKFWRRMNLESVKPDNFTFASILTGLAALSEFRLGLQVHGQLVKSGYG 449

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
           +D  VGN+L  MY++N ++  G + F+ ++  D  SW  + +       P + L + Y+M
Sbjct: 450 NDICVGNSLCDMYVKNQKLLDGFKAFDEMSSSDVCSWTQMAAGCLQCGEPMKALEVIYEM 509

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
              G + N  T    L +C++L+ +  GK+ H   IK   D +  V  +L+DMY K GC+
Sbjct: 510 KNVGVRLNKFTLATALNSCANLASIEEGKKFHGLRIKLGTDVDVCVDNALLDMYAKCGCM 569

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
             A V F S+  + + ++T +I  +A  G+ + AL+ F +MR    + N  T    LN C
Sbjct: 570 TSANVVFRSMDERSVVSWTTMIMGFAHNGQTKEALQIFDEMRKGEAEPNHITFICVLNAC 629

Query: 365 SPVATL-------ANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           S    +       ++    H IA    H +       +V +  + G I +AE +      
Sbjct: 630 SQGGFIDEAWKYFSSMSADHGIAPSEDHYV------CMVNLLGRAGCIKEAEDLILQMPF 683

Query: 418 RD-TASWNMMIGGYVKHG---LGEKALE 441
           +  +  W  ++G  + HG    G++A E
Sbjct: 684 QPGSLVWQTLLGACLVHGDIETGKRAAE 711



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 142/311 (45%), Gaps = 14/311 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLKGFA 62
           A  VF+S    + VSWNA++ GY +    +  +  F    ++E  K   F+ +++L G A
Sbjct: 371 ALEVFESCLSKDTVSWNAMMAGYLQLAYFE--LPKFWRRMNLESVKPDNFTFASILTGLA 428

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
                + G  VH   ++ G   D  +  SL DMY K     +  K F  +   DV +W  
Sbjct: 429 ALSEFRLGLQVHGQLVKSGYGNDICVGNSLCDMYVKNQKLLDGFKAFDEMSSSDVCSWTQ 488

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +     Q G   +A ++   M+   V+ N+F L + + +         G+  H +  K G
Sbjct: 489 MAAGCLQCGEPMKALEVIYEMKNVGVRLNKFTLATALNSCANLASIEEGKKFHGLRIKLG 548

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            + D  V NAL+ MY + G ++  + VF ++  +  VSW  +   F       + L+IF 
Sbjct: 549 TDVDVCVDNALLDMYAKCGCMTSANVVFRSMDERSVVSWTTMIMGFAHNGQTKEALQIFD 608

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS------LVD 296
           +M     +PN  TFI +L ACS     GF  +  A     S+  +H +  S      +V+
Sbjct: 609 EMRKGEAEPNHITFICVLNACSQ---GGFIDE--AWKYFSSMSADHGIAPSEDHYVCMVN 663

Query: 297 MYDKSGCLEDA 307
           +  ++GC+++A
Sbjct: 664 LLGRAGCIKEA 674



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 80/173 (46%), Gaps = 9/173 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A  VF+SM E +VVSW  ++ G+A +G  ++ + +F  M+  E + +  +   VL  
Sbjct: 569 MTSANVVFRSMDERSVVSWTTMIMGFAHNGQTKEALQIFDEMRKGEAEPNHITFICVLNA 628

Query: 61  FANSGYI-KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            +  G+I +A +   +M+   G A  +     +V++  + G    A  +  ++   P  +
Sbjct: 629 CSQGGFIDEAWKYFSSMSADHGIAPSEDHYVCMVNLLGRAGCIKEAEDLILQMPFQPGSL 688

Query: 119 AWGAII-TCL---DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD 167
            W  ++  CL   D +   + A    NL R     P+ ++L S + A  +  D
Sbjct: 689 VWQTLLGACLVHGDIETGKRAAEHALNLDRND---PSTYILLSNMFAGGDNWD 738


>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
          Length = 676

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 183/599 (30%), Positives = 308/599 (51%), Gaps = 3/599 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFS-KFSLSTVLKGFA 62
           A+++F  +   ++ SWNA++  Y  SG     + LF  M    +++   ++   V+K   
Sbjct: 75  ARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACG 134

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           +    + G ++HA  +  G   D F+  SL+ MY  CG  + A +VF  +++  +V+W  
Sbjct: 135 DYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNT 194

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I    + GC +EA  +F+ M    ++P+   + S++   +   +   G  +HA++    
Sbjct: 195 MINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKN 254

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
              D  V N+L+ MY + G +     +F  +  +D VSW  + + +         L +  
Sbjct: 255 LGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQ 314

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            M  +  KPN  T   +L AC+SL  +  G+ LH   I+  L+   +V T+L+DMY K  
Sbjct: 315 MMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCN 374

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            +  +   F   + +    + AII+     G +  A++ F++M +E +  N+ TL S L 
Sbjct: 375 NVNLSFRVFSKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLP 434

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG--SALRDT 420
             + +  L   R +H   +++G L  + V+T L+ +Y+KCGS++ A  +F G     +D 
Sbjct: 435 AYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDI 494

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            +W+ +I GY  HG GE A+  F  M+  G  P+EITF  +L ACSH GL++EG   F  
Sbjct: 495 ITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGLGLFKF 554

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + +   ++    H+ C+ID+LGRAG+  E    I      PN  VW  LLG+C  H N+E
Sbjct: 555 MLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALLGSCVIHENVE 614

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           L E  A+ L ELEP    NYV  ++I +  GRW D   VR ++++ G++K P+ S IEV
Sbjct: 615 LGEVAAKWLFELEPGNTGNYVLLANIYSAVGRWRDAEHVRLMMNNIGLRKTPAHSLIEV 673



 Score =  229 bits (583), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 146/508 (28%), Positives = 254/508 (50%), Gaps = 13/508 (2%)

Query: 67  IKAGQVVHAMAIRLGCALDKF---LSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           I   + +HA  I LG     +   L  SL   Y+ CG A +A K+F  +++P + +W A+
Sbjct: 34  IPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMCGCAPHARKLFDELRNPSLFSWNAM 93

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVK-PNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I      G   +A  +F  M  S  + P+ +    +++A  +      G  IHA     G
Sbjct: 94  IRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEMGALIHARTVMSG 153

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F+SD  V N+L++MYM  G +    RVF+ +  +  VSWN + + +       + L +F 
Sbjct: 154 FDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFD 213

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            M+ KG +P+  T + +L  CS L ++  G+++HA     +L  +  V  SL+DMY K G
Sbjct: 214 WMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCG 273

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            +++A + F  +  +D+ ++T ++  Y   G+A  AL   + M+ E +K N  TLAS L+
Sbjct: 274 NMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLS 333

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+ + +L +GR LH  A++     ++ V TAL+ MYAKC +++ +  VF   + + TA 
Sbjct: 334 ACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKXSKQRTAP 393

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN +I G + +GL  KA+E F+ ML E   P++ T   +L A + +  +++ +     + 
Sbjct: 394 WNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLI 453

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIEN-FITETKLTPNALVWENLLGACSWHGNIEL 541
           +  G    I+    +IDI  + G      N F    K   + + W  ++     HG+   
Sbjct: 454 R-SGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGH--- 509

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISAT 569
                E  + L  +M  + V P++I+ T
Sbjct: 510 ----GETAISLFDQMVQSGVKPNEITFT 533



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 136/457 (29%), Positives = 221/457 (48%), Gaps = 29/457 (6%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM--KDMEKKFSKFSLSTVL 58
           ME+A+RVF  M E  +VSWN ++NGY ++G  ++ + +F  M  K +E        +TV+
Sbjct: 174 MEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEP-----DCATVV 228

Query: 59  KGFANSGYIK---AGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP 115
                  Y+K    G+ VHA+        D  +  SL+DMY+KCG  D A  +FY +   
Sbjct: 229 SVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKR 288

Query: 116 DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH 175
           DVV+W  ++      G  + A  +  +M+  SVKPN   L S++ A       + G  +H
Sbjct: 289 DVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLH 348

Query: 176 AVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD 235
               +   ES+ +V  AL+ MY +   V+   RVF   + Q +  WNA+ S         
Sbjct: 349 GWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKXSKQRTAPWNAIISGCIHNGLSR 408

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
           + + +F QML++   PN  T   +L A + L+D+   + +H + I+        V T L+
Sbjct: 409 KAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILI 468

Query: 296 DMYDKSGCLEDAGVAFDSLA--NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           D+Y K G LE A   F+ +   +KD+  ++AII  Y   G  E A+  F +M   G+K N
Sbjct: 469 DIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPN 528

Query: 354 EFTLASCLNGCSPVATLANGRLL-------HSIAVKTGHLLDMFVSTALVAMYAKCGSID 406
           E T  S L+ CS    +  G  L       + ++++T H       T ++ +  + G ++
Sbjct: 529 EITFTSILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHY------TCVIDLLGRAGRLE 582

Query: 407 DAEAVFKGSALR-DTASWNMMIGGYVKH---GLGEKA 439
           +A  + +  A R + A W  ++G  V H    LGE A
Sbjct: 583 EAYELIRTMAFRPNHAVWGALLGSCVIHENVELGEVA 619



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/262 (31%), Positives = 128/262 (48%), Gaps = 5/262 (1%)

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSL---DGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
           +L+ C+S   +   KQ+HAHTI   L     +H + +SL   Y   GC   A   FD L 
Sbjct: 24  LLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMCGCAPHARKLFDELR 83

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK-SNEFTLASCLNGCSPVATLANGR 374
           N  LF++ A+I  Y  +G +  AL  F +M   G +  + +T    +  C        G 
Sbjct: 84  NPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEMGA 143

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
           L+H+  V +G   D FV  +L+AMY  CG ++ A  VF     R   SWN MI GY K+G
Sbjct: 144 LIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNG 203

Query: 435 LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHF 494
             ++AL  F  M+ +G  PD  T V VL  CS++  +E G++   ++ ++  +   I  +
Sbjct: 204 CVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRR-VHALVEVKNLGEDISVW 262

Query: 495 ACMIDILGRAGKFTEIENFITE 516
             ++D+  + G   E +    E
Sbjct: 263 NSLLDMYAKCGNMDEAQMIFYE 284


>gi|356546044|ref|XP_003541442.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Glycine max]
          Length = 628

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 187/567 (32%), Positives = 300/567 (52%), Gaps = 14/567 (2%)

Query: 47  KKFSKFSLST---VLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLAD 103
           + FS + L T    L+  A++  +  G+ +H   ++           SL++MYSKC L D
Sbjct: 22  RGFSTYDLGTCIATLQSCAHNANLSKGKELHTHLLKNAFFGSPLAITSLINMYSKCSLID 81

Query: 104 NALKVFY--RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRA 161
           ++L+VF      + +V A+ A+I         Q A  ++N MR   + P++F    ++RA
Sbjct: 82  HSLRVFNFPTHHNKNVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIRA 141

Query: 162 TTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSW 221
             +  D      IH ++ K G E D  VG+ALV+ Y++   V    RVFE +  +D V W
Sbjct: 142 CGDDDDGFVVTKIHGLMFKVGLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLW 201

Query: 222 NALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK 281
           NA+ + F      ++ L +F +M   G  P   T   +L   S + D   G+ +H    K
Sbjct: 202 NAMVNGFAQIGRFEEALGVFRRMGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTK 261

Query: 282 HSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKC 341
              +   VV  +L+DMY K  C+ DA   F+ +   D+F++ +I++ + + G+    L+ 
Sbjct: 262 MGYESGVVVSNALIDMYGKCKCVGDALSVFEMMDEIDIFSWNSIMSVHERCGDHYGTLRL 321

Query: 342 F-RKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG------HLL--DMFVS 392
           F R M    ++ +  T+ + L  C+ +A L +GR +H   V  G      H +  D+ ++
Sbjct: 322 FDRMMGSSRVQPDLVTVTTVLPACTHLAALMHGREIHGYMVVNGLAKEESHDVFDDVLLN 381

Query: 393 TALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV 452
            AL+ MYAKCG++ DA  VF     +D ASWN+MI GY  HG G +AL+ F  M     V
Sbjct: 382 NALMDMYAKCGNMRDARMVFVNMREKDVASWNIMITGYGMHGYGGEALDIFSRMCQAQMV 441

Query: 453 PDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIEN 512
           P+EI+FV +LSACSH G+++EG    S ++  YG++P+I+H+ C+ID+L RAG+  E  +
Sbjct: 442 PNEISFVGLLSACSHAGMVKEGLGFLSEMESKYGVSPSIEHYTCVIDMLCRAGQLMEAYD 501

Query: 513 FITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGR 572
            +       + + W +LL AC  H + +L E  A K++ELEP    NYV  S++    GR
Sbjct: 502 LVLTMPFKADPVGWRSLLAACRLHNDTDLAEVAASKVIELEPDHCGNYVLMSNVYGVVGR 561

Query: 573 WNDFSGVRALLSSQGIKKEPSCSWIEV 599
           + +    R  +  Q +KK P CSWIE+
Sbjct: 562 YEEVLEWRYTMKQQNVKKRPGCSWIEL 588



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 112/433 (25%), Positives = 204/433 (47%), Gaps = 15/433 (3%)

Query: 8   FKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK--GFANSG 65
           F +    NV ++NAL+ G+  +   Q+ + L+  M+ +     KF+   V++  G  + G
Sbjct: 89  FPTHHNKNVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGDDDDG 148

Query: 66  YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT 125
           ++     +H +  ++G  LD F+  +LV+ Y K      A +VF  +   DVV W A++ 
Sbjct: 149 FVVTK--IHGLMFKVGLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVN 206

Query: 126 CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
              Q G  +EA  +F  M  + V P ++ +T ++   +  GD   G ++H  + K G+ES
Sbjct: 207 GFAQIGRFEEALGVFRRMGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTKMGYES 266

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
             +V NAL+ MY +   V     VFE +   D  SWN++ S  +        LR+F +M+
Sbjct: 267 GVVVSNALIDMYGKCKCVGDALSVFEMMDEIDIFSWNSIMSVHERCGDHYGTLRLFDRMM 326

Query: 246 LKG-FKPNMCTFIVILKACSSLSDVGFGKQLHAHTI--------KHSLDGNHVVGTSLVD 296
                +P++ T   +L AC+ L+ +  G+++H + +         H +  + ++  +L+D
Sbjct: 327 GSSRVQPDLVTVTTVLPACTHLAALMHGREIHGYMVVNGLAKEESHDVFDDVLLNNALMD 386

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           MY K G + DA + F ++  KD+ ++  +IT Y   G    AL  F +M    +  NE +
Sbjct: 387 MYAKCGNMRDARMVFVNMREKDVASWNIMITGYGMHGYGGEALDIFSRMCQAQMVPNEIS 446

Query: 357 LASCLNGCSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA-EAVFKG 414
               L+ CS    +  G   L  +  K G    +   T ++ M  + G + +A + V   
Sbjct: 447 FVGLLSACSHAGMVKEGLGFLSEMESKYGVSPSIEHYTCVIDMLCRAGQLMEAYDLVLTM 506

Query: 415 SALRDTASWNMMI 427
               D   W  ++
Sbjct: 507 PFKADPVGWRSLL 519



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 156/317 (49%), Gaps = 16/317 (5%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A RVF+ +P  +VV WNA++NG+A+ G  ++ + +F  M        +++++ VL  F+ 
Sbjct: 186 AYRVFEELPVRDVVLWNAMVNGFAQIGRFEEALGVFRRMGGNGVVPCRYTVTGVLSIFSV 245

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G    G+ VH    ++G      +S +L+DMY KC    +AL VF  + + D+ +W +I
Sbjct: 246 MGDFDNGRAVHGFVTKMGYESGVVVSNALIDMYGKCKCVGDALSVFEMMDEIDIFSWNSI 305

Query: 124 ITCLDQQGCCQEAAKIFN-LMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           ++  ++ G      ++F+ +M  S V+P+   +T+++ A T       G  IH  +   G
Sbjct: 306 MSVHERCGDHYGTLRLFDRMMGSSRVQPDLVTVTTVLPACTHLAALMHGREIHGYMVVNG 365

Query: 183 FE--------SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
                      D L+ NAL+ MY + G +     VF  +  +D  SWN + + +  +   
Sbjct: 366 LAKEESHDVFDDVLLNNALMDMYAKCGNMRDARMVFVNMREKDVASWNIMITGYGMHGYG 425

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDV----GFGKQLHAHTIKHSLDGNHVV 290
            + L IF +M      PN  +F+ +L ACS    V    GF  ++ +   K+ +  +   
Sbjct: 426 GEALDIFSRMCQAQMVPNEISFVGLLSACSHAGMVKEGLGFLSEMES---KYGVSPSIEH 482

Query: 291 GTSLVDMYDKSGCLEDA 307
            T ++DM  ++G L +A
Sbjct: 483 YTCVIDMLCRAGQLMEA 499



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A+ VF +M E +V SWN ++ GY   G G + + +F  M   +   ++ S   +L  
Sbjct: 394 MRDARMVFVNMREKDVASWNIMITGYGMHGYGGEALDIFSRMCQAQMVPNEISFVGLLSA 453

Query: 61  FANSGYIKAG 70
            +++G +K G
Sbjct: 454 CSHAGMVKEG 463


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 188/576 (32%), Positives = 302/576 (52%), Gaps = 40/576 (6%)

Query: 63  NSGYIKAGQVVHAMAIRLGC-----ALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
           N   +++ +++HA  I+ G      AL K +  S++  +   GL   A+ VF  I++P++
Sbjct: 11  NCKTLQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFD-GLT-YAISVFDSIQEPNL 68

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           + W  +            A  ++  M    + PN +    L++A  ++   R G+ IH  
Sbjct: 69  LIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGH 128

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS----------------- 220
           + K G + D  V  +L++MY++NGR     +VF+  +H+D VS                 
Sbjct: 129 VLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSA 188

Query: 221 --------------WNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266
                         WNAL S + +  +  + L +F +M+    KP+  T + +L AC+  
Sbjct: 189 QKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQS 248

Query: 267 SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
           + +  G+Q+H+    H    N  +  +L+D+Y K G +E A   F+ L+ KD+ ++  +I
Sbjct: 249 ASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLI 308

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVK--TG 384
             Y      + AL  F++M   G   NE T+ S L  C+ +  +  GR +H    K   G
Sbjct: 309 GGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKG 368

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
                 + T+L+ MYAKCG I+ A+ VF     R  +SWN MI G+  HG    A + F 
Sbjct: 369 VSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFS 428

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA 504
            M  +G  PD+ITFV +LSACSH G+++ G+  F S+ + Y ITP ++H+ CMID+LG +
Sbjct: 429 RMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHS 488

Query: 505 GKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564
           G F E E  I   ++ P+ ++W +LL AC  HGN+EL E  A+ L+++EPK   +YV  S
Sbjct: 489 GLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYVLLS 548

Query: 565 DISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           +I AT GRWN+ +  RALL+ +G+KK P CS IE+D
Sbjct: 549 NIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEID 584



 Score =  208 bits (529), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 121/407 (29%), Positives = 204/407 (50%), Gaps = 33/407 (8%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A  VF S+ E N++ WN +  G+A S D    ++L+  M  +    + ++   +LK 
Sbjct: 53  LTYAISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKA 112

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYR--------- 111
            A S   + GQ +H   ++LGC LD ++  SL+ MY K G  ++A KVF +         
Sbjct: 113 CAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSY 172

Query: 112 ----------------------IKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK 149
                                 I   DVV+W A+I+   + G  +EA ++F  M +++VK
Sbjct: 173 TALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVK 232

Query: 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRV 209
           P++  + +++ A  ++     G  +H+ I  +GF S+  + NAL+ +Y++ G V   S +
Sbjct: 233 PDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGL 292

Query: 210 FEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDV 269
           FE ++++D +SWN L   +       + L +F +ML  G  PN  T + IL AC+ L  +
Sbjct: 293 FEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAI 352

Query: 270 GFGKQLHAHTIKH--SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIIT 327
             G+ +H +  K    +     + TSL+DMY K G +E A   FDS+ N+ L ++ A+I 
Sbjct: 353 DIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIF 412

Query: 328 SYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
            +A  G A  A   F +MR +GI+ ++ T    L+ CS    L  GR
Sbjct: 413 GFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGR 459



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 152/319 (47%), Gaps = 17/319 (5%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F  +P  +VVSWNAL++GYAE+G+ ++ + LF  M     K  + ++ TVL   A 
Sbjct: 188 AQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQ 247

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           S  I+ G+ VH+     G   +  +  +L+D+Y KCG  + A  +F  +   DV++W  +
Sbjct: 248 SASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTL 307

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY-- 181
           I         +EA  +F  M  S   PN+  + S++ A    G    G  IH  I K   
Sbjct: 308 IGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLK 367

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G  + + +  +L+ MY + G +    +VF+++ ++   SWNA+   F  +   +    IF
Sbjct: 368 GVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIF 427

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M   G +P+  TF+ +L ACS    +  G+                +  S+ + Y  +
Sbjct: 428 SRMRKDGIEPDDITFVGLLSACSHSGMLDLGRH---------------IFRSMTEDYKIT 472

Query: 302 GCLEDAGVAFDSLANKDLF 320
             LE  G   D L +  LF
Sbjct: 473 PKLEHYGCMIDLLGHSGLF 491



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 88/176 (50%), Gaps = 2/176 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  +F+ +   +V+SWN L+ GY      ++ + LF  M    +  ++ ++ ++L  
Sbjct: 286 VETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPA 345

Query: 61  FANSGYIKAGQVVHA-MAIRL-GCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
            A+ G I  G+ +H  +  RL G +    L  SL+DMY+KCG  + A +VF  + +  + 
Sbjct: 346 CAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLS 405

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
           +W A+I      G    A  IF+ MR+  ++P+      L+ A + +G    G  I
Sbjct: 406 SWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHI 461


>gi|302774170|ref|XP_002970502.1| hypothetical protein SELMODRAFT_93612 [Selaginella moellendorffii]
 gi|300162018|gb|EFJ28632.1| hypothetical protein SELMODRAFT_93612 [Selaginella moellendorffii]
          Length = 825

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 179/568 (31%), Positives = 305/568 (53%), Gaps = 3/568 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ +F SM E ++++WNAL+  Y + G  ++ + L+  M     K  K +   +L  
Sbjct: 252 LEDARAIFSSMVERDIIAWNALITEYGQHGHVEEAVLLYQLMLQEGCKPDKVTFVALLTM 311

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 +   ++VH+  +  G +++  L  +LV MYSKC   ++   +F ++   +V++W
Sbjct: 312 SNGPEALTDVKLVHSHIVESGVSINIALGTALVAMYSKCESLEDTRWLFEKMPQRNVISW 371

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             ++T   + G  ++A +I   M+   VKP+      L+   T + D + G  +H  I +
Sbjct: 372 NVMVTAYAKHGLGRKAVQITEYMQLDGVKPDNVTCVGLLNVCTGSADLKLGRKVHGWIAE 431

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              E+D ++ N+L++MY   G V     VF+ I  ++ +SW A+ + +      D  L +
Sbjct: 432 GRCEADLILWNSLLNMYGRCGEVEQAEMVFDGILQRNVISWTAMLTAYSRQNRQDMALLL 491

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F+ + L G KP   TF+  L AC     +G G+ +H+  ++   D +  +G++LV MY +
Sbjct: 492 FHAIHLSGVKPTCITFLEALDACVGAEALGKGRLVHSCAVQSGNDTDVSLGSALVAMYGR 551

Query: 301 SGCLEDAGVAFDSL-ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
            G + DA   FD     K+   ++A+I ++ Q G+    L+  R M+ +G+  +  T AS
Sbjct: 552 CGSIRDAKACFDDTEVRKNHVTWSAMIAAFVQHGQDREGLQHLRFMQQQGLDMSPATFAS 611

Query: 360 CLNGCSPVATLANGRLLHS-IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
            L+ CS +A L  G+ +HS +  +        V+ +LV MY KCGS+D A  VF+ S  +
Sbjct: 612 TLSACSNLADLREGKRIHSYVRERRFDTEAATVTNSLVTMYGKCGSLDCAREVFETSRRQ 671

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D   WN +I GY +HG    A+E F  M  EG  PD +TFV +LS CSH GL++EG   +
Sbjct: 672 DIICWNAIISGYAQHGQTRDAVELFHRMQQEGVTPDPVTFVCILSVCSHGGLLDEGVYAY 731

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           +S+ ++ G+ PT  ++AC+ID+LGRAGK  E E FI      P      +LL +C  HG+
Sbjct: 732 ASMVEL-GLEPTQDNYACVIDLLGRAGKLQEAEEFIQSLGTRPAIETLTSLLSSCKSHGD 790

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDI 566
           ++   + AE ++E++P+  S +V  S I
Sbjct: 791 VQRGRRAAEGIMEMDPRSSSAHVVLSSI 818



 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 141/462 (30%), Positives = 237/462 (51%), Gaps = 3/462 (0%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           +H+  +R       FL   L+  Y KC   D+A + F R+   +V  W AII       C
Sbjct: 22  LHSQIVRASLDNRVFLGNHLIHTYGKCHSLDDAWETFERMSYKNVYTWTAIIGVCAHHHC 81

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
              A  +   M    VKP+   L + + +   +     G+ IH +I + G + D ++ NA
Sbjct: 82  HSLAIILLRQMLLEGVKPDNITLLAALTSCETSQALPAGKLIHGLIAQSGHQCDLILENA 141

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           LVSMY   G V    RVF+A+  ++ ++W A+     +  S +Q  ++F  M L+GFK N
Sbjct: 142 LVSMYGSCGSVDDAKRVFDAMPARNVITWTAMIGAHAE-TSLEQAFKVFRLMELEGFKSN 200

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
             T++ +++ACS    +  G  LH  +++ S      +  +L+ MY + G LEDA   F 
Sbjct: 201 FVTYVTLVQACSKPEFLEVGIILHMRSVESSSAMETPLCNALITMYGRCGRLEDARAIFS 260

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
           S+  +D+ A+ A+IT Y Q G  E A+  ++ M  EG K ++ T  + L   +    L +
Sbjct: 261 SMVERDIIAWNALITEYGQHGHVEEAVLLYQLMLQEGCKPDKVTFVALLTMSNGPEALTD 320

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
            +L+HS  V++G  +++ + TALVAMY+KC S++D   +F+    R+  SWN+M+  Y K
Sbjct: 321 VKLVHSHIVESGVSINIALGTALVAMYSKCESLEDTRWLFEKMPQRNVISWNVMVTAYAK 380

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK 492
           HGLG KA++    M  +G  PD +T V +L+ C+    ++ G+K    I +       I 
Sbjct: 381 HGLGRKAVQITEYMQLDGVKPDNVTCVGLLNVCTGSADLKLGRKVHGWIAEGRCEADLIL 440

Query: 493 HFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
            +  ++++ GR G+  + E  + +  L  N + W  +L A S
Sbjct: 441 -WNSLLNMYGRCGEVEQAE-MVFDGILQRNVISWTAMLTAYS 480



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 143/539 (26%), Positives = 257/539 (47%), Gaps = 10/539 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A   F+ M   NV +W A++   A        + L   M     K    +L   L     
Sbjct: 54  AWETFERMSYKNVYTWTAIIGVCAHHHCHSLAIILLRQMLLEGVKPDNITLLAALTSCET 113

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           S  + AG+++H +  + G   D  L  +LV MY  CG  D+A +VF  +   +V+ W A+
Sbjct: 114 SQALPAGKLIHGLIAQSGHQCDLILENALVSMYGSCGSVDDAKRVFDAMPARNVITWTAM 173

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I     +   ++A K+F LM     K N     +LV+A ++      G  +H    +   
Sbjct: 174 IGA-HAETSLEQAFKVFRLMELEGFKSNFVTYVTLVQACSKPEFLEVGIILHMRSVESSS 232

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             +T + NAL++MY   GR+     +F ++  +D ++WNAL + +  +   ++ + ++  
Sbjct: 233 AMETPLCNALITMYGRCGRLEDARAIFSSMVERDIIAWNALITEYGQHGHVEEAVLLYQL 292

Query: 244 MLLKGFKPNMCTFIVILKACS---SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           ML +G KP+  TF+ +L   +   +L+DV   K +H+H ++  +  N  +GT+LV MY K
Sbjct: 293 MLQEGCKPDKVTFVALLTMSNGPEALTDV---KLVHSHIVESGVSINIALGTALVAMYSK 349

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
              LED    F+ +  +++ ++  ++T+YA+ G    A++    M+L+G+K +  T    
Sbjct: 350 CESLEDTRWLFEKMPQRNVISWNVMVTAYAKHGLGRKAVQITEYMQLDGVKPDNVTCVGL 409

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           LN C+  A L  GR +H    +     D+ +  +L+ MY +CG ++ AE VF G   R+ 
Sbjct: 410 LNVCTGSADLKLGRKVHGWIAEGRCEADLILWNSLLNMYGRCGEVEQAEMVFDGILQRNV 469

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK-KHFS 479
            SW  M+  Y +    + AL  F  +   G  P  ITF+  L AC     + +G+  H  
Sbjct: 470 ISWTAMLTAYSRQNRQDMALLLFHAIHLSGVKPTCITFLEALDACVGAEALGKGRLVHSC 529

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           +++   G    +   + ++ + GR G   + +    +T++  N + W  ++ A   HG 
Sbjct: 530 AVQS--GNDTDVSLGSALVAMYGRCGSIRDAKACFDDTEVRKNHVTWSAMIAAFVQHGQ 586



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 152/287 (52%), Gaps = 7/287 (2%)

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
           ++ +L+AC  L  +   ++LH+  ++ SLD    +G  L+  Y K   L+DA   F+ ++
Sbjct: 3   YVRLLQACPKLKALDIARRLHSQIVRASLDNRVFLGNHLIHTYGKCHSLDDAWETFERMS 62

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRL 375
            K+++ +TAII   A      +A+   R+M LEG+K +  TL + L  C     L  G+L
Sbjct: 63  YKNVYTWTAIIGVCAHHHCHSLAIILLRQMLLEGVKPDNITLLAALTSCETSQALPAGKL 122

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           +H +  ++GH  D+ +  ALV+MY  CGS+DDA+ VF     R+  +W  MIG + +  L
Sbjct: 123 IHGLIAQSGHQCDLILENALVSMYGSCGSVDDAKRVFDAMPARNVITWTAMIGAHAETSL 182

Query: 436 GEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG-KKHFSSIKKIYGI-TPTIKH 493
            E+A + FR+M  EG+  + +T+V ++ ACS    +E G   H  S++    + TP    
Sbjct: 183 -EQAFKVFRLMELEGFKSNFVTYVTLVQACSKPEFLEVGIILHMRSVESSSAMETPLCN- 240

Query: 494 FACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
              +I + GR G+  E    I  + +  + + W  L+     HG++E
Sbjct: 241 --ALITMYGRCGRL-EDARAIFSSMVERDIIAWNALITEYGQHGHVE 284


>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
           [Vitis vinifera]
 gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 183/599 (30%), Positives = 308/599 (51%), Gaps = 3/599 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFS-KFSLSTVLKGFA 62
           A+++F  +   ++ SWNA++  Y  SG     + LF  M    +++   ++   V+K   
Sbjct: 75  ARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACG 134

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           +    + G ++HA  +  G   D F+  SL+ MY  CG  + A +VF  +++  +V+W  
Sbjct: 135 DYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNT 194

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I    + GC +EA  +F+ M    ++P+   + S++   +   +   G  +HA++    
Sbjct: 195 MINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKN 254

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
              D  V N+L+ MY + G +     +F  +  +D VSW  + + +         L +  
Sbjct: 255 LGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQ 314

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            M  +  KPN  T   +L AC+SL  +  G+ LH   I+  L+   +V T+L+DMY K  
Sbjct: 315 MMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCN 374

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            +  +   F   + +    + AII+     G +  A++ F++M +E +  N+ TL S L 
Sbjct: 375 NVNLSFRVFSKTSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLP 434

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG--SALRDT 420
             + +  L   R +H   +++G L  + V+T L+ +Y+KCGS++ A  +F G     +D 
Sbjct: 435 AYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDI 494

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            +W+ +I GY  HG GE A+  F  M+  G  P+EITF  +L ACSH GL++EG   F  
Sbjct: 495 ITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGLGLFKF 554

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + +   ++    H+ C+ID+LGRAG+  E    I      PN  VW  LLG+C  H N+E
Sbjct: 555 MLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALLGSCVIHENVE 614

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           L E  A+ L ELEP    NYV  ++I +  GRW D   VR ++++ G++K P+ S IEV
Sbjct: 615 LGEVAAKWLFELEPGNTGNYVLLANIYSAVGRWRDAEHVRLMMNNIGLRKTPAHSLIEV 673



 Score =  225 bits (573), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 145/508 (28%), Positives = 254/508 (50%), Gaps = 13/508 (2%)

Query: 67  IKAGQVVHAMAIRLGCALDKF---LSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           I   + +HA  I LG     +   L  SL   Y+  G A +A K+F  +++P + +W A+
Sbjct: 34  IPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMFGCAPHARKLFDELRNPSLFSWNAM 93

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVK-PNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I      G   +A  +F  M  S  + P+ +    +++A  +      G  IHA     G
Sbjct: 94  IRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEMGALIHARTVMSG 153

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F+SD  V N+L++MYM  G +    RVF+ +  +  VSWN + + +       + L +F 
Sbjct: 154 FDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFD 213

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            M+ KG +P+  T + +L  CS L ++  G+++HA     +L  +  V  SL+DMY K G
Sbjct: 214 WMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCG 273

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            +++A + F  +  +D+ ++T ++  Y   G+A  AL   + M+ E +K N  TLAS L+
Sbjct: 274 NMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLS 333

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+ + +L +GR LH  A++     ++ V TAL+ MYAKC +++ +  VF  ++ + TA 
Sbjct: 334 ACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKTSKQRTAP 393

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN +I G + +GL  KA+E F+ ML E   P++ T   +L A + +  +++ +     + 
Sbjct: 394 WNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLI 453

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIEN-FITETKLTPNALVWENLLGACSWHGNIEL 541
           +  G    I+    +IDI  + G      N F    K   + + W  ++     HG+   
Sbjct: 454 R-SGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGH--- 509

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISAT 569
                E  + L  +M  + V P++I+ T
Sbjct: 510 ----GETAISLFDQMVQSGVKPNEITFT 533



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 136/457 (29%), Positives = 221/457 (48%), Gaps = 29/457 (6%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM--KDMEKKFSKFSLSTVL 58
           ME+A+RVF  M E  +VSWN ++NGY ++G  ++ + +F  M  K +E        +TV+
Sbjct: 174 MEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEP-----DCATVV 228

Query: 59  KGFANSGYIK---AGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP 115
                  Y+K    G+ VHA+        D  +  SL+DMY+KCG  D A  +FY +   
Sbjct: 229 SVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKR 288

Query: 116 DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH 175
           DVV+W  ++      G  + A  +  +M+  SVKPN   L S++ A       + G  +H
Sbjct: 289 DVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLH 348

Query: 176 AVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD 235
               +   ES+ +V  AL+ MY +   V+   RVF   + Q +  WNA+ S         
Sbjct: 349 GWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKTSKQRTAPWNAIISGCIHNGLSR 408

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
           + + +F QML++   PN  T   +L A + L+D+   + +H + I+        V T L+
Sbjct: 409 KAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILI 468

Query: 296 DMYDKSGCLEDAGVAFDSLA--NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           D+Y K G LE A   F+ +   +KD+  ++AII  Y   G  E A+  F +M   G+K N
Sbjct: 469 DIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPN 528

Query: 354 EFTLASCLNGCSPVATLANGRLL-------HSIAVKTGHLLDMFVSTALVAMYAKCGSID 406
           E T  S L+ CS    +  G  L       + ++++T H       T ++ +  + G ++
Sbjct: 529 EITFTSILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHY------TCVIDLLGRAGRLE 582

Query: 407 DAEAVFKGSALR-DTASWNMMIGGYVKH---GLGEKA 439
           +A  + +  A R + A W  ++G  V H    LGE A
Sbjct: 583 EAYELIRTMAFRPNHAVWGALLGSCVIHENVELGEVA 619



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/262 (31%), Positives = 128/262 (48%), Gaps = 5/262 (1%)

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSL---DGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
           +L+ C+S   +   KQ+HAHTI   L     +H + +SL   Y   GC   A   FD L 
Sbjct: 24  LLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMFGCAPHARKLFDELR 83

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK-SNEFTLASCLNGCSPVATLANGR 374
           N  LF++ A+I  Y  +G +  AL  F +M   G +  + +T    +  C        G 
Sbjct: 84  NPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEMGA 143

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
           L+H+  V +G   D FV  +L+AMY  CG ++ A  VF     R   SWN MI GY K+G
Sbjct: 144 LIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNG 203

Query: 435 LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHF 494
             ++AL  F  M+ +G  PD  T V VL  CS++  +E G++   ++ ++  +   I  +
Sbjct: 204 CVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRR-VHALVEVKNLGEDISVW 262

Query: 495 ACMIDILGRAGKFTEIENFITE 516
             ++D+  + G   E +    E
Sbjct: 263 NSLLDMYAKCGNMDEAQMIFYE 284


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 190/595 (31%), Positives = 306/595 (51%), Gaps = 15/595 (2%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           +F+ M   +   WN ++ GY  +G  Q+ +  +  M+    +   F+   V+K       
Sbjct: 80  MFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVIKACGELLA 139

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +  GQ VH   I++G  LD ++   L+DMY K G  + A KVF  +   D+V+W ++++ 
Sbjct: 140 LMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVSG 199

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
               G    +   F  M     K ++F + S + A +     R G  IH  + +   E D
Sbjct: 200 YQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSELELD 259

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
            +V  +L+ MY + G+V Y  RVF  I  ++ V+WNA+    Q+ +              
Sbjct: 260 IMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGMQEDDK------------- 306

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
               P++ T I +L +CS    +  GK +H   I+       V+ T+LVDMY K G L+ 
Sbjct: 307 --VIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKL 364

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A   F+ +  K++ ++  ++ +Y Q  + + ALK F+ +  E +K +  T+AS L   + 
Sbjct: 365 AEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAE 424

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           +A+ + G+ +HS  +K G   + F+S A+V MYAKCG +  A   F G   +D  SWN M
Sbjct: 425 LASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTM 484

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           I  Y  HG G  +++ F  M  +G+ P+  TFV +L+ACS  GLI+EG   F+S+K  YG
Sbjct: 485 IMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYG 544

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDA 546
           I P I+H+ CM+D+LGR G   E + FI E  L P A +W +LL A   H ++ L E  A
Sbjct: 545 IDPGIEHYGCMLDLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAASRNHNDVVLAELAA 604

Query: 547 EKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
             +L L+      YV  S++ A  GRW D   ++ L+  QG+ K   CS ++++G
Sbjct: 605 RHILSLKHDNTGCYVLLSNMYAEAGRWEDVDRIKYLMKEQGLVKTVGCSMVDING 659



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 148/528 (28%), Positives = 249/528 (47%), Gaps = 25/528 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +ELA++VF  MP  ++VSWN++++GY   GDG   +  F  M  +  K  +F + + L  
Sbjct: 175 IELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGA 234

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    +++G  +H   IR    LD  +  SL+DMY KCG  D A +VF RI   ++VAW
Sbjct: 235 CSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAW 294

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I      G  QE  K+          P+   + +L+ + +++G    G+SIH    +
Sbjct: 295 NAMI------GGMQEDDKVI---------PDVITMINLLPSCSQSGALLEGKSIHGFAIR 339

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             F    ++  ALV MY + G +     VF  +  ++ VSWN + + +   E   + L++
Sbjct: 340 KMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKM 399

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  +L +  KP+  T   +L A + L+    GKQ+H++ +K  L  N  +  ++V MY K
Sbjct: 400 FQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAK 459

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L+ A   FD +  KD+ ++  +I +YA  G    +++ F +MR +G K N  T  S 
Sbjct: 460 CGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSL 519

Query: 361 LNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
           L  CS    +  G    +S+ V+ G    +     ++ +  + G++D+A+   +   L  
Sbjct: 520 LTACSISGLIDEGWGFFNSMKVEYGIDPGIEHYGCMLDLLGRNGNLDEAKCFIEEMPLVP 579

Query: 420 TAS-WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK-KH 477
           TA  W  ++     H     A  A R +L   +  D     V+LS        E G+ + 
Sbjct: 580 TARIWGSLLAASRNHNDVVLAELAARHILSLKH--DNTGCYVLLSNM----YAEAGRWED 633

Query: 478 FSSIKKIYGITPTIKHFAC-MIDILGRAGKFTEIENFITETKLTPNAL 524
              IK +      +K   C M+DI GR+  F   +     T L  + L
Sbjct: 634 VDRIKYLMKEQGLVKTVGCSMVDINGRSESFINQDRSHAHTNLIYDVL 681



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 122/442 (27%), Positives = 208/442 (47%), Gaps = 17/442 (3%)

Query: 96  YSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVL 155
           + + GL  NAL +F ++   D   W  II      G  QEA   +  M    ++ + F  
Sbjct: 68  FVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTF 127

Query: 156 TSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH 215
             +++A  E      G+ +H  + K GF+ D  V N L+ MY++ G +    +VF+ +  
Sbjct: 128 PFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPV 187

Query: 216 QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL 275
           +D VSWN++ S +Q        L  F +ML  G K +    I  L ACS    +  G ++
Sbjct: 188 RDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEI 247

Query: 276 HAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEA 335
           H   I+  L+ + +V TSL+DMY K G ++ A   F+ + +K++ A+ A+I    +    
Sbjct: 248 HCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGMQED--- 304

Query: 336 EMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTAL 395
                       + +  +  T+ + L  CS    L  G+ +H  A++   L  + + TAL
Sbjct: 305 ------------DKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETAL 352

Query: 396 VAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE 455
           V MY KCG +  AE VF     ++  SWN M+  YV++   ++AL+ F+ +L+E   PD 
Sbjct: 353 VDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDA 412

Query: 456 ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFIT 515
           IT   VL A + +    EGK+  S I K+ G+         ++ +  + G       F  
Sbjct: 413 ITIASVLPAVAELASRSEGKQIHSYIMKL-GLGSNTFISNAIVYMYAKCGDLQTAREFF- 470

Query: 516 ETKLTPNALVWENLLGACSWHG 537
           +  +  + + W  ++ A + HG
Sbjct: 471 DGMVCKDVVSWNTMIMAYAIHG 492


>gi|302806575|ref|XP_002985037.1| hypothetical protein SELMODRAFT_121365 [Selaginella moellendorffii]
 gi|300147247|gb|EFJ13912.1| hypothetical protein SELMODRAFT_121365 [Selaginella moellendorffii]
          Length = 763

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 190/573 (33%), Positives = 306/573 (53%), Gaps = 10/573 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AK+VF S    + V+W A++ GYAE+G+ ++ +HLF  M+     +++ + +++L+   +
Sbjct: 188 AKKVFDSTQARDAVAWTAMMLGYAENGEAERALHLFACMEQQGCMYNREAYTSLLRECIS 247

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ G  +HA  I +    D  +   LV MY+KCG    A K FY I+  + V+W  +
Sbjct: 248 GRALERGARIHARLIAIEKDKDTAIGNLLVQMYAKCGDLHRARKAFYSIERRNSVSWTVM 307

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQ--FVLTSLVRATTETGDQRCGESIHAVICKY 181
           +      G  ++   +F+ M     + +   F L+ ++ A +  G    G++IHA +   
Sbjct: 308 LAAYIDHGKQEQGLCLFHTMDLEGAQADMDAFTLSCVLSACSSLGAGAEGQAIHARLVAC 367

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G+E D  + NALV+MY +   +    RVF+ I  +  VSW ++ S +  +E  D+ L++F
Sbjct: 368 GYELDIPLQNALVTMYAKCHCLEEARRVFDNIQDKSRVSWTSIISAYVQHERGDESLKMF 427

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVG----FGKQLHAHTIKHSLDGNHVVGTSLVDM 297
             M L G +P+  T   +  AC  L D G     G+ +H        D N VVGT+LV M
Sbjct: 428 LAMNLDGMQPDEMTLSALCAACCQLEDRGRGLAVGRGVHTRIRVAGHDQNPVVGTALVCM 487

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y + GCL +A   F+ L  KD+ ++ A++T+  +AGEAE AL+  ++MR EG+  +  T 
Sbjct: 488 YARCGCLLEAAAVFNKLTPKDVVSWNAMLTATVEAGEAEEALRLHQRMRAEGVMPDAATF 547

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF---KG 414
           A  +  CS +   A  R +H+     G        TALV MYAKCG +DDA  VF   + 
Sbjct: 548 AVVVAACSALKDEATSRAVHTEVAARGLDGHPVSGTALVCMYAKCGRLDDATTVFERMQR 607

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
            ++   A+WN ++    KHG G  A+E FR+M      PD IT  V+L ACSH GL+  G
Sbjct: 608 HSVLAVAAWNSILAALAKHGHGATAVEFFRVMTMAYVQPDGITITVMLHACSHSGLLATG 667

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
             +F S+   +G+ P  +H+AC+ID+LGRAG   E E  I      P+ + W+ LL +C 
Sbjct: 668 LDYFLSMLHDFGLAPAAEHYACLIDLLGRAGVGAEAEEVIRGMPFAPDNVAWKTLLASCQ 727

Query: 535 WHGNIELDEKDAEKLLELEPKM-ESNYVFPSDI 566
              +     + A +L+ ++P + +S+YV  S+I
Sbjct: 728 TSKDAGRGSRAAMQLIRMDPLLHDSSYVLLSNI 760



 Score =  241 bits (616), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 174/575 (30%), Positives = 281/575 (48%), Gaps = 17/575 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDME-KKFSKFSLSTVLKGFA 62
           A+  F+ +   + VSW  L+  Y E+G G + + LF  M D       +  L+ ++   +
Sbjct: 86  ARAEFEKLQRRDAVSWTTLILAYTENGRGGEALELFSRMADEGCLPDGRTYLAALVACAS 145

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
               ++ G  VH+ +   GC    F++ +L+DMYSKCG   +A KVF   +  D VAW A
Sbjct: 146 LLRCLERGMDVHSQSRTSGCDSVPFVANTLIDMYSKCGSLLDAKKVFDSTQARDAVAWTA 205

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           ++    + G  + A  +F  M +     N+   TSL+R          G  IHA +    
Sbjct: 206 MMLGYAENGEAERALHLFACMEQQGCMYNREAYTSLLRECISGRALERGARIHARLIAIE 265

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            + DT +GN LV MY + G +    + F +I  ++SVSW  + + + D+   +QGL +F+
Sbjct: 266 KDKDTAIGNLLVQMYAKCGDLHRARKAFYSIERRNSVSWTVMLAAYIDHGKQEQGLCLFH 325

Query: 243 QMLLKGFKPNMCTFIV--ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
            M L+G + +M  F +  +L ACSSL     G+ +HA  +    + +  +  +LV MY K
Sbjct: 326 TMDLEGAQADMDAFTLSCVLSACSSLGAGAEGQAIHARLVACGYELDIPLQNALVTMYAK 385

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
             CLE+A   FD++ +K   ++T+II++Y Q    + +LK F  M L+G++ +E TL++ 
Sbjct: 386 CHCLEEARRVFDNIQDKSRVSWTSIISAYVQHERGDESLKMFLAMNLDGMQPDEMTLSAL 445

Query: 361 LNGCSPVAT----LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
              C  +      LA GR +H+     GH  +  V TALV MYA+CG + +A AVF    
Sbjct: 446 CAACCQLEDRGRGLAVGRGVHTRIRVAGHDQNPVVGTALVCMYARCGCLLEAAAVFNKLT 505

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            +D  SWN M+   V+ G  E+AL   + M  EG +PD  TF VV++ACS +      + 
Sbjct: 506 PKDVVSWNAMLTATVEAGEAEEALRLHQRMRAEGVMPDAATFAVVVAACSALKDEATSRA 565

Query: 477 HFSSI--KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
             + +  + + G   +     CM    GR    T +   +    +   A  W ++L A +
Sbjct: 566 VHTEVAARGLDGHPVSGTALVCMYAKCGRLDDATTVFERMQRHSVLAVA-AWNSILAALA 624

Query: 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSDISAT 569
            HG+           +E    M   YV P  I+ T
Sbjct: 625 KHGH-------GATAVEFFRVMTMAYVQPDGITIT 652



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 145/523 (27%), Positives = 244/523 (46%), Gaps = 22/523 (4%)

Query: 52  FSLSTVLKGFANSGYIKAGQVVHAMAIRLGCAL--DKFLSCSLVDMYSKCGLADNALKVF 109
           F  +TV+  F+  G +   + V    +R       D +   SLV+MY+KCG    A   F
Sbjct: 31  FVANTVIDVFSRCGSLVNARNVFDRMVRRDVVSWNDSYALNSLVNMYAKCGSLVEARAEF 90

Query: 110 YRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPN-QFVLTSLVRATTETGDQ 168
            +++  D V+W  +I    + G   EA ++F+ M +    P+ +  L +LV   +     
Sbjct: 91  EKLQRRDAVSWTTLILAYTENGRGGEALELFSRMADEGCLPDGRTYLAALVACASLLRCL 150

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228
             G  +H+     G +S   V N L+ MY + G +    +VF++   +D+V+W A+   +
Sbjct: 151 ERGMDVHSQSRTSGCDSVPFVANTLIDMYSKCGSLLDAKKVFDSTQARDAVAWTAMMLGY 210

Query: 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH 288
            +    ++ L +F  M  +G   N   +  +L+ C S   +  G ++HA  I    D + 
Sbjct: 211 AENGEAERALHLFACMEQQGCMYNREAYTSLLRECISGRALERGARIHARLIAIEKDKDT 270

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
            +G  LV MY K G L  A  AF S+  ++  ++T ++ +Y   G+ E  L  F  M LE
Sbjct: 271 AIGNLLVQMYAKCGDLHRARKAFYSIERRNSVSWTVMLAAYIDHGKQEQGLCLFHTMDLE 330

Query: 349 GIKS--NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSID 406
           G ++  + FTL+  L+ CS +   A G+ +H+  V  G+ LD+ +  ALV MYAKC  ++
Sbjct: 331 GAQADMDAFTLSCVLSACSSLGAGAEGQAIHARLVACGYELDIPLQNALVTMYAKCHCLE 390

Query: 407 DAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
           +A  VF     +   SW  +I  YV+H  G+++L+ F  M  +G  PDE+T   + +AC 
Sbjct: 391 EARRVFDNIQDKSRVSWTSIISAYVQHERGDESLKMFLAMNLDGMQPDEMTLSALCAACC 450

Query: 467 HM-----GLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTP 521
            +     GL      H       +   P +     ++ +  R G   E        KLTP
Sbjct: 451 QLEDRGRGLAVGRGVHTRIRVAGHDQNPVVG--TALVCMYARCGCLLEAAAVF--NKLTP 506

Query: 522 NALV-WENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFP 563
             +V W  +L A        ++  +AE+ L L  +M +  V P
Sbjct: 507 KDVVSWNAMLTA-------TVEAGEAEEALRLHQRMRAEGVMP 542



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/343 (30%), Positives = 151/343 (44%), Gaps = 40/343 (11%)

Query: 173 SIHAVICKYGFESDTLVG-------------------------------------NALVS 195
           ++HA   + G ESDT V                                      N+LV+
Sbjct: 16  ALHAGAVEIGAESDTFVANTVIDVFSRCGSLVNARNVFDRMVRRDVVSWNDSYALNSLVN 75

Query: 196 MYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCT 255
           MY + G +      FE +  +D+VSW  L   + +     + L +F +M  +G  P+  T
Sbjct: 76  MYAKCGSLVEARAEFEKLQRRDAVSWTTLILAYTENGRGGEALELFSRMADEGCLPDGRT 135

Query: 256 FIVILKACSSLSD-VGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
           ++  L AC+SL   +  G  +H+ +     D    V  +L+DMY K G L DA   FDS 
Sbjct: 136 YLAALVACASLLRCLERGMDVHSQSRTSGCDSVPFVANTLIDMYSKCGSLLDAKKVFDST 195

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
             +D  A+TA++  YA+ GEAE AL  F  M  +G   N     S L  C     L  G 
Sbjct: 196 QARDAVAWTAMMLGYAENGEAERALHLFACMEQQGCMYNREAYTSLLRECISGRALERGA 255

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
            +H+  +      D  +   LV MYAKCG +  A   F     R++ SW +M+  Y+ HG
Sbjct: 256 RIHARLIAIEKDKDTAIGNLLVQMYAKCGDLHRARKAFYSIERRNSVSWTVMLAAYIDHG 315

Query: 435 LGEKALEAFRMMLDEGYVPDEITFVV--VLSACSHMGLIEEGK 475
             E+ L  F  M  EG   D   F +  VLSACS +G   EG+
Sbjct: 316 KQEQGLCLFHTMDLEGAQADMDAFTLSCVLSACSSLGAGAEGQ 358



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 128/271 (47%), Gaps = 7/271 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+RVF ++ + + VSW ++++ Y +   G + + +F +M     +  + +LS +   
Sbjct: 389 LEEARRVFDNIQDKSRVSWTSIISAYVQHERGDESLKMFLAMNLDGMQPDEMTLSALCAA 448

Query: 61  ---FANSGY-IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD 116
                + G  +  G+ VH      G   +  +  +LV MY++CG    A  VF ++   D
Sbjct: 449 CCQLEDRGRGLAVGRGVHTRIRVAGHDQNPVVGTALVCMYARCGCLLEAAAVFNKLTPKD 508

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
           VV+W A++T   + G  +EA ++   MR   V P+      +V A +   D+    ++H 
Sbjct: 509 VVSWNAMLTATVEAGEAEEALRLHQRMRAEGVMPDAATFAVVVAACSALKDEATSRAVHT 568

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSV---SWNALFSRFQDYES 233
            +   G +   + G ALV MY + GR+   + VFE +     +   +WN++ +    +  
Sbjct: 569 EVAARGLDGHPVSGTALVCMYAKCGRLDDATTVFERMQRHSVLAVAAWNSILAALAKHGH 628

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACS 264
               +  F  M +   +P+  T  V+L ACS
Sbjct: 629 GATAVEFFRVMTMAYVQPDGITITVMLHACS 659



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 92/230 (40%), Gaps = 45/230 (19%)

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN-- 424
           VA+L     LH+ AV+ G   D FV+  ++ ++++CGS+ +A  VF     RD  SWN  
Sbjct: 8   VASLDKCCALHAGAVEIGAESDTFVANTVIDVFSRCGSLVNARNVFDRMVRRDVVSWNDS 67

Query: 425 -----------------------------------MMIGGYVKHGLGEKALEAFRMMLDE 449
                                               +I  Y ++G G +ALE F  M DE
Sbjct: 68  YALNSLVNMYAKCGSLVEARAEFEKLQRRDAVSWTTLILAYTENGRGGEALELFSRMADE 127

Query: 450 GYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTE 509
           G +PD  T++  L AC+ +    E      S  +  G          +ID+  + G   +
Sbjct: 128 GCLPDGRTYLAALVACASLLRCLERGMDVHSQSRTSGCDSVPFVANTLIDMYSKCGSLLD 187

Query: 510 IENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESN 559
            +     T+   +A+ W  ++   + +G       +AE+ L L   ME  
Sbjct: 188 AKKVFDSTQ-ARDAVAWTAMMLGYAENG-------EAERALHLFACMEQQ 229


>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1161

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 183/522 (35%), Positives = 290/522 (55%), Gaps = 6/522 (1%)

Query: 84  LDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLM 143
           L+   S  L+DMY KC     A KVF  + + +VV+W A+++     G  + +  +F+ M
Sbjct: 410 LNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEM 469

Query: 144 RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRV 203
               + PN+F  ++ ++A         G  IH    K GFE    VGN+LV MY + GR+
Sbjct: 470 GRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRI 529

Query: 204 SYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFK--PNMCTFIVILK 261
           +   +VF  I  +  +SWNA+ + F       + L  F  M     K  P+  T   +LK
Sbjct: 530 NEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLK 589

Query: 262 ACSSLSDVGFGKQLHAHTIK---HSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKD 318
           ACSS   +  GKQ+H   ++   H      + G SLVD+Y K G L  A  AFD +  K 
Sbjct: 590 ACSSTGMIYAGKQIHGFLVRSGFHCPSSATITG-SLVDLYVKCGYLFSARKAFDQIKEKT 648

Query: 319 LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHS 378
           + +++++I  YAQ GE   A+  F++++    + + F L+S +   +  A L  G+ + +
Sbjct: 649 MISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQA 708

Query: 379 IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEK 438
           +AVK    L+  V  ++V MY KCG +D+AE  F    L+D  SW ++I GY KHGLG+K
Sbjct: 709 LAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKK 768

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMI 498
           ++  F  ML     PDE+ ++ VLSACSH G+I+EG++ FS + + +GI P ++H+AC++
Sbjct: 769 SVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVV 828

Query: 499 DILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMES 558
           D+LGRAG+  E ++ I    + PN  +W+ LL  C  HG+IEL ++  + LL ++ K  +
Sbjct: 829 DLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPA 888

Query: 559 NYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           NYV  S++    G WN+    R L + +G+KKE   SW+E++
Sbjct: 889 NYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIE 930



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 123/451 (27%), Positives = 226/451 (50%), Gaps = 6/451 (1%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           +A +VF SMPE NVVSW+AL++G+  +GD +  + LF  M       ++F+ ST LK   
Sbjct: 430 MAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACG 489

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
               ++ G  +H   +++G  +   +  SLVDMYSKCG  + A KVF RI D  +++W A
Sbjct: 490 LLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNA 549

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVK--PNQFVLTSLVRATTETGDQRCGESIHAVICK 180
           +I      G   +A   F +M+E+++K  P++F LTSL++A + TG    G+ IH  + +
Sbjct: 550 MIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVR 609

Query: 181 YGFE--SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            GF   S   +  +LV +Y++ G +    + F+ I  +  +SW++L   +       + +
Sbjct: 610 SGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAM 669

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            +F ++     + +      I+   +  + +  GKQ+ A  +K        V  S+VDMY
Sbjct: 670 GLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMY 729

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G +++A   F  +  KD+ ++T +IT Y + G  + +++ F +M    I+ +E    
Sbjct: 730 LKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYL 789

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA-LVAMYAKCGSIDDAEAVFKGSAL 417
           + L+ CS    +  G  L S  ++T  +       A +V +  + G + +A+ +     +
Sbjct: 790 AVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPI 849

Query: 418 R-DTASWNMMIGGYVKHGLGEKALEAFRMML 447
           + +   W  ++     HG  E   E  +++L
Sbjct: 850 KPNVGIWQTLLSLCRVHGDIELGKEVGKILL 880


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 193/609 (31%), Positives = 319/609 (52%), Gaps = 37/609 (6%)

Query: 20  NALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIR 79
           + L+    + G  ++ +H+   M +        +  ++L+G  N+  +   +++HA  I+
Sbjct: 33  DGLVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQ 92

Query: 80  --LGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAA 137
               C  D  L   LV +Y K G    A +VF  +   +VV+W A+I    +    QEA 
Sbjct: 93  TQFECQ-DISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEAL 151

Query: 138 KIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMY 197
             F  M++  ++PN F   S++ A T+   +  GE  H  I K GFES+  VGN LV MY
Sbjct: 152 GFFYEMQDVGIQPNHFTFASILPACTDL--EVLGE-FHDEIVKGGFESNVFVGNGLVDMY 208

Query: 198 MENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFI 257
            + G + +   +F+ +  +D VSWNA+ + +      +  L++F ++     K ++ T+ 
Sbjct: 209 AKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIP----KRDVITWN 264

Query: 258 VILKACSSLSDVGFGKQLHAHTIKHSL---------------------------DGNHVV 290
            ++   +   DV    +L     + +L                           + N + 
Sbjct: 265 TMMAGYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVIS 324

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
             +++  + ++G +E+A   F ++   ++ ++ A+I  Y+Q G+AE ALK F +M++  +
Sbjct: 325 WNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDM 384

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
           K N  T A  L  C+ +A L  G   H + +++G   D+ V   LV MYAKCGSI+DA  
Sbjct: 385 KPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARK 444

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           VF     +D+AS + MI GY  +G  +++LE F  M   G  PD +TFV VLSAC H GL
Sbjct: 445 VFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGL 504

Query: 471 IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
           ++EG+++F  + + Y ITP ++H+ CMID+LGRAG F E  + I +  + P+A +W +LL
Sbjct: 505 VDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMPIKPDADMWGSLL 564

Query: 531 GACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKK 590
            AC  H NI+L EK A+ L+ L P+  + YV  S+I A  GRW+D   VR  +  + +KK
Sbjct: 565 SACRTHNNIDLGEKVAQHLIALNPQNPAPYVLLSNIYAAAGRWDDIGSVRNRMKDRKVKK 624

Query: 591 EPSCSWIEV 599
           +  CSWI +
Sbjct: 625 KLGCSWIVI 633



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 126/475 (26%), Positives = 222/475 (46%), Gaps = 49/475 (10%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+RVF  MP  NVVSW A++  YA    GQ+ +  F  M+D+  + + F+ +++L    +
Sbjct: 119 ARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACTD 178

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++     H   ++ G   + F+   LVDMY+K G  + A ++F ++   DVV+W A+
Sbjct: 179 ---LEVLGEFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAM 235

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV------ 177
           I    Q G  ++A K+F  +      P + V+T     T   G  +CG+  +AV      
Sbjct: 236 IAGYVQNGLIEDALKLFQEI------PKRDVIT---WNTMMAGYAQCGDVENAVELFEKM 286

Query: 178 -------------------ICKYGF-------ESDTLVGNALVSMYMENGRVSYGSRVFE 211
                                K  F       E + +  NA++S + +NG+V    ++F+
Sbjct: 287 PEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFK 346

Query: 212 AIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGF 271
            +   + VSWNA+ + +      +  L++F QM +   KPN  TF ++L AC++L+ +  
Sbjct: 347 TMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQ 406

Query: 272 GKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQ 331
           G + H   I+     + +VG +LV MY K G +EDA   FD +  +D  + +A+I  YA 
Sbjct: 407 GNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAI 466

Query: 332 AGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLD-MF 390
            G ++ +L+ F +M+  G+K +  T    L+ C     +  GR    I  +  H+   M 
Sbjct: 467 NGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMTRFYHITPAME 526

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALR-DTASWNMMIGGYVKHG---LGEKALE 441
               ++ +  + G  D+A  +     ++ D   W  ++     H    LGEK  +
Sbjct: 527 HYGCMIDLLGRAGCFDEANDLINKMPIKPDADMWGSLLSACRTHNNIDLGEKVAQ 581



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 156/336 (46%), Gaps = 34/336 (10%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ +F  MP+ +VVSWNA++ GY ++G  +  + LF  +     K    + +T++ G
Sbjct: 214 IEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEI----PKRDVITWNTMMAG 269

Query: 61  FAN--------------------------SGYIKAGQVVHAMAIRLGCALDKFLSC-SLV 93
           +A                           +GY++ G V  A  +         +S  +++
Sbjct: 270 YAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVI 329

Query: 94  DMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQF 153
             +++ G  + ALK+F  + + +VV+W A+I    Q G  + A K+F  M+   +KPN  
Sbjct: 330 SGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTE 389

Query: 154 VLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAI 213
               ++ A         G   H V+ + GF+SD LVGN LV MY + G +    +VF+ +
Sbjct: 390 TFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRM 449

Query: 214 AHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGK 273
             QDS S +A+   +       + L +F QM   G KP+  TF+ +L AC     V  G+
Sbjct: 450 RQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEGR 509

Query: 274 QLHAHTIK--HSLDGNHVVGTSLVDMYDKSGCLEDA 307
           Q      +  H        G  ++D+  ++GC ++A
Sbjct: 510 QYFDIMTRFYHITPAMEHYGC-MIDLLGRAGCFDEA 544


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 198/661 (29%), Positives = 322/661 (48%), Gaps = 64/661 (9%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLKGFA 62
           A  +F  MP  +V SWN L++GY +S      +  F SM +  +   + F+ +  +K   
Sbjct: 90  AVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCG 149

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP------- 115
             G       +  M  + G   D  ++ +LVDM+ +CG  D A ++F RIK+P       
Sbjct: 150 ALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNS 209

Query: 116 ------------------------DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPN 151
                                   DVV+W  +++ L Q G  +EA  +   M+   V+ +
Sbjct: 210 MLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLD 269

Query: 152 QFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFE 211
               TS + A       R G+ +HA + +     D  V +ALV +Y + G       VF 
Sbjct: 270 STTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFN 329

Query: 212 AIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGF 271
           ++  +++V+W  L + F  +    + + +F QM  +    +      ++  C S  D+  
Sbjct: 330 SLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCL 389

Query: 272 GKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQ 331
           G+QLH+  +K       VV  SL+ MY K   L+ A   F  +  KD+ ++T++IT+++Q
Sbjct: 390 GRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQ 449

Query: 332 AGEAEMALKCFRKMRLEGI--------------------------------KSNEFTLAS 359
            G    A + F  M  + +                                + +  T  +
Sbjct: 450 VGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVT 509

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
              GC+ +     G  +    VK G +LD  V+ A++ MY+KCG I +A  VF    ++D
Sbjct: 510 LFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKD 569

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SWN MI GY +HG+G++A+E F  +L  G  PD I++V VLS CSH GL++EGK +F 
Sbjct: 570 IVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFD 629

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
            +K+++ I+P ++HF+CM+D+LGRAG  TE ++ I E  + P A VW  LL AC  HGN 
Sbjct: 630 MMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNN 689

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           EL E  A+ + EL+     +Y+  + I A  G+ +D + +R L+  +GIKK P  SW+EV
Sbjct: 690 ELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEV 749

Query: 600 D 600
           +
Sbjct: 750 N 750



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/433 (23%), Positives = 182/433 (42%), Gaps = 72/433 (16%)

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           + +  N +++ Y++ GR+S    +F  +  +D  SWN L S +   +     L  F  M 
Sbjct: 70  NVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMH 129

Query: 246 LKG-FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
             G   PN  TF   +K+C +L +     QL     K     +  V  +LVDM+ + G +
Sbjct: 130 RSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTV 189

Query: 305 EDA--------------------------GV-----AFDSLANKDLFAYTAIITSYAQAG 333
           + A                          GV      FDS+  +D+ ++  ++++ +Q+G
Sbjct: 190 DLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSG 249

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST 393
               AL     M+ +G++ +  T  S L  C+ +++L  G+ LH+  ++    +D +V++
Sbjct: 250 RVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVAS 309

Query: 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP 453
           ALV +YAKCG   +A+ VF     R+  +W ++I G+++HG   +++E F  M  E    
Sbjct: 310 ALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTL 369

Query: 454 DEITFVVVLSA-CSHMGLIEEGKKHFSSIK--KIYGITPT-------------------- 490
           D+     ++S  CS M L    + H   +K  +I  +  +                    
Sbjct: 370 DQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIF 429

Query: 491 -------IKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG------ 537
                  I  +  MI    + G   +   F  +   T N + W  +LGA   HG      
Sbjct: 430 RFMNEKDIVSWTSMITAHSQVGNIAKAREFF-DGMSTKNVITWNAMLGAYIQHGAEEDGL 488

Query: 538 ---NIELDEKDAE 547
              N+ L EKD  
Sbjct: 489 RMYNVMLSEKDVR 501



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 78/367 (21%), Positives = 140/367 (38%), Gaps = 72/367 (19%)

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA------GV 309
           F   L++C +   +   + LH   +   L     +  +L+  Y   G L DA       +
Sbjct: 7   FADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDI 66

Query: 310 A--------------------------FDSLANKDLFAYTAIITSYAQAGEAEMALKCFR 343
           A                          F  +  +D+ ++  +++ Y Q+ +   +L+ F 
Sbjct: 67  AHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFV 126

Query: 344 KMRLEGIKS-NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC 402
            M   G  S N FT A  +  C  +   +    L  +  K G   D  V+ ALV M+ +C
Sbjct: 127 SMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRC 186

Query: 403 GSIDDAEAVF----------KGSAL---------------------RDTASWNMMIGGYV 431
           G++D A  +F          + S L                     RD  SWNMM+    
Sbjct: 187 GTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALS 246

Query: 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPT 490
           + G   +AL+    M  +G   D  T+   L+AC+ +  +  GK+ H   I+ +  I P 
Sbjct: 247 QSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPY 306

Query: 491 IKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG----NIELDEKDA 546
           +   + ++++  + G F E +          N + W  L+     HG    ++EL  +  
Sbjct: 307 VA--SALVELYAKCGCFKEAKGVFNSLH-DRNNVAWTVLIAGFLQHGCFTESVELFNQMR 363

Query: 547 EKLLELE 553
            +L+ L+
Sbjct: 364 AELMTLD 370


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 189/600 (31%), Positives = 316/600 (52%), Gaps = 3/600 (0%)

Query: 4   AKRVFKSMPEL-NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           A+R+F    E  + V WN++L+ Y+ SG   + + LF  M       + +++ + L    
Sbjct: 236 ARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACD 295

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSC-SLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
              Y K G+ +HA  ++      +   C +L+ MY++CG    A ++  ++ + DVV W 
Sbjct: 296 GFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWN 355

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           ++I    Q    +EA + F+ M  +  K ++  +TS++ A+    +   G  +HA + K+
Sbjct: 356 SLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKH 415

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G++S+  VGN L+ MY +     Y  R F  +  +D +SW  + + +   +   + L +F
Sbjct: 416 GWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELF 475

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
             +  K  + +      IL+A S L  +   K++H H ++  L  + V+   LVD+Y K 
Sbjct: 476 RDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL-LDTVIQNELVDVYGKC 534

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
             +  A   F+S+  KD+ ++T++I+S A  G    A++ FR+M   G+ ++   L   L
Sbjct: 535 RNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCIL 594

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           +  + ++ L  GR +H   ++ G  L+  ++ A+V MYA CG +  A+AVF     +   
Sbjct: 595 SAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLL 654

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
            +  MI  Y  HG G+ A+E F  M  E   PD I+F+ +L ACSH GL++EG+     +
Sbjct: 655 QYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIM 714

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
           +  Y + P  +H+ C++D+LGRA    E   F+   K  P A VW  LL AC  H   E+
Sbjct: 715 EHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEI 774

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
            E  A++LLELEPK   N V  S++ A QGRWND   VRA + + G++K P CSWIE+DG
Sbjct: 775 GEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDG 834



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 156/572 (27%), Positives = 267/572 (46%), Gaps = 24/572 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF  MP+    +WN ++  Y  +G+    + L+ +M+         S   +LK  A 
Sbjct: 135 AEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAK 194

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP-DVVAWGA 122
              I++G  +H++ ++LG     F+  +LV MY+K      A ++F   ++  D V W +
Sbjct: 195 LRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNS 254

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I++     G   E  ++F  M  +   PN + + S + A       + G+ IHA + K  
Sbjct: 255 ILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSS 314

Query: 183 FESDTL-VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
             S  L V NAL++MY   G++    R+   + + D V+WN+L   +       + L  F
Sbjct: 315 THSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFF 374

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
             M+  G K +  +   I+ A   LS++  G +LHA+ IKH  D N  VG +L+DMY K 
Sbjct: 375 SDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKC 434

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
                 G AF  + +KDL ++T +I  YAQ      AL+ FR +  + ++ +E  L S L
Sbjct: 435 NLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSIL 494

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
              S + ++   + +H   ++ G LLD  +   LV +Y KC ++  A  VF+    +D  
Sbjct: 495 RASSVLKSMLIVKEIHCHILRKG-LLDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVV 553

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSS 480
           SW  MI     +G   +A+E FR M++ G   D +  + +LSA + +  + +G++ H   
Sbjct: 554 SWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYL 613

Query: 481 IKKIYGITPTI-----KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
           ++K + +  +I       +AC  D+      F  IE            L + +++ A   
Sbjct: 614 LRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIER--------KGLLQYTSMINAYGM 665

Query: 536 HGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           HG         +  +EL  KM    V P  IS
Sbjct: 666 HGC-------GKAAVELFDKMRHENVSPDHIS 690



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 126/457 (27%), Positives = 212/457 (46%), Gaps = 11/457 (2%)

Query: 87  FLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRES 146
           FL+  LV MY KCG  D+A KVF  + D    AW  +I      G    A  ++  MR  
Sbjct: 117 FLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVE 176

Query: 147 SVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYG 206
            V        +L++A  +  D R G  +H+++ K G+ S   + NALVSMY +N  +S  
Sbjct: 177 GVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAA 236

Query: 207 SRVFEAIAHQ-DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSS 265
            R+F+    + D+V WN++ S +       + L +F +M + G  PN  T +  L AC  
Sbjct: 237 RRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDG 296

Query: 266 LSDVGFGKQLHAHTIKHSLDGNHV-VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA 324
            S    GK++HA  +K S   + + V  +L+ MY + G +  A      + N D+  + +
Sbjct: 297 FSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNS 356

Query: 325 IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           +I  Y Q    + AL+ F  M   G KS+E ++ S +     ++ L  G  LH+  +K G
Sbjct: 357 LIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHG 416

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
              ++ V   L+ MY+KC         F     +D  SW  +I GY ++    +ALE FR
Sbjct: 417 WDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFR 476

Query: 445 MMLDEGYVPDEITFVVVLSACS---HMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDIL 501
            +  +    DE+    +L A S    M +++E   H   ++K  G+  T+     ++D+ 
Sbjct: 477 DVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHI--LRK--GLLDTVIQNE-LVDVY 531

Query: 502 GRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           G+              K   + + W +++ + + +GN
Sbjct: 532 GKCRNMGYATRVFESIK-GKDVVSWTSMISSSALNGN 567



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 153/336 (45%), Gaps = 17/336 (5%)

Query: 208 RVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFK--------PNMCTFIVI 259
           R+  +I  + S   N      Q  + P   L  F  +L + F+          +  F  +
Sbjct: 27  RLHCSIPTEPSCRRNPFRQSNQPVQVPSPKLACFDGVLTEAFQRLDVSENNSPVEAFAYV 86

Query: 260 LKACSSLSDVGFGKQLHAHTIK--HSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK 317
           L+ C     V  G+QLH+   K   S + + + G  LV MY K G L+DA   FD + ++
Sbjct: 87  LELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAG-KLVFMYGKCGSLDDAEKVFDEMPDR 145

Query: 318 DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLH 377
             FA+  +I +Y   GE   AL  +  MR+EG+     +  + L  C+ +  + +G  LH
Sbjct: 146 TAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELH 205

Query: 378 SIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DTASWNMMIGGYVKHGLG 436
           S+ VK G+    F+  ALV+MYAK   +  A  +F G   + D   WN ++  Y   G  
Sbjct: 206 SLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKS 265

Query: 437 EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFAC 496
            + LE FR M   G  P+  T V  L+AC      + GK+  +S+ K    T + + + C
Sbjct: 266 LETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLK--SSTHSSELYVC 323

Query: 497 --MIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
             +I +  R GK  + E  + +     + + W +L+
Sbjct: 324 NALIAMYTRCGKMPQAERILRQMN-NADVVTWNSLI 358


>gi|255577487|ref|XP_002529622.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530907|gb|EEF32767.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 752

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 180/602 (29%), Positives = 321/602 (53%), Gaps = 2/602 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++LA++VF  M   N ++W +L+ GY E  D Q    +   M    + F++ + + +L+ 
Sbjct: 118 LDLAQKVFDRMRTRNTITWTSLIKGYLEDNDFQSAFSIAGDMHKFGENFNEHTCTVILQA 177

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ++      G+ +H   I+ G   + F+  SL+ MY+K G  D A KVF  +   D+   
Sbjct: 178 CSSPDDRILGEQIHCFVIKSGFDENVFVGTSLIAMYTKSGFFDVAEKVFDSMGFKDIRCL 237

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I    + G   +A ++F  +     +P  +  T+++           G+ +  +  K
Sbjct: 238 NFMILEYGRAGNGGKAIEVFKNLLNDGFEPTDYTFTNIISTCNGDLGVEEGKQLQGLAFK 297

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           YGF S+T VGNA+++MY  +G      R+F +++ ++ +SW AL S +       + +  
Sbjct: 298 YGFLSETSVGNAIITMYGNSGMPKEAERMFSSMSEKNLISWTALISGYSRSGYGKKAVDA 357

Query: 241 FYQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           F  +  + G   +      IL  CS  +++  G Q+H   +K     +  V T+LVD+Y 
Sbjct: 358 FLGLHDELGINFDSTLLTAILDCCSDCNNLELGLQIHGFVMKLGCACDVNVATALVDLYA 417

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQA-GEAEMALKCFRKMRLEGIKSNEFTLA 358
           K   L+ A + FD L+NK + ++ AI+  + ++ G+ E  +  F ++RL G+K +  T +
Sbjct: 418 KCEKLQSARIVFDHLSNKGIASFNAILAGFLESSGDEEDPMILFNQLRLAGVKPDMVTFS 477

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
             L+  +  A+L  GR  H+  VKTG   ++ V+ ++++MYAKCGSI+DA  +F     R
Sbjct: 478 RLLSLLANQASLEKGRSFHAYTVKTGFDTNISVANSVISMYAKCGSIEDAHQMFNIMNCR 537

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D+ SWN +I  Y  HG  +K+L  F  M  +G+ PDE T + +L AC++ GL ++G   F
Sbjct: 538 DSISWNALISAYALHGQAQKSLFLFEEMKRKGFDPDEFTILAILQACTYSGLWKDGICLF 597

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           + ++  YGI P ++H+ACM D+LGRAG  +E  + I  +    + L+W  L+  C  HGN
Sbjct: 598 NLMEPKYGIKPLLEHYACMADLLGRAGYLSEAMDIIKRSPFPKSTLLWRTLVNVCKLHGN 657

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           +   +  ++ LL+L P    +Y+  S++ A++   ++ + VR +++    +KE   SWIE
Sbjct: 658 LNFGKLASKHLLDLSPVEAGSYILVSNMYASEKMSDEAAKVRKVMNDLKFRKEAGSSWIE 717

Query: 599 VD 600
           +D
Sbjct: 718 ID 719



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 127/474 (26%), Positives = 229/474 (48%), Gaps = 6/474 (1%)

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
           GQ VH+  ++ G   D F   +++++Y K    D A KVF R++  + + W ++I    +
Sbjct: 86  GQAVHSYLVKAGSQDDTFKGNNVLNLYVKFNRLDLAQKVFDRMRTRNTITWTSLIKGYLE 145

Query: 130 QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
               Q A  I   M +     N+   T +++A +   D+  GE IH  + K GF+ +  V
Sbjct: 146 DNDFQSAFSIAGDMHKFGENFNEHTCTVILQACSSPDDRILGEQIHCFVIKSGFDENVFV 205

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
           G +L++MY ++G      +VF+++  +D    N +   +    +  + + +F  +L  GF
Sbjct: 206 GTSLIAMYTKSGFFDVAEKVFDSMGFKDIRCLNFMILEYGRAGNGGKAIEVFKNLLNDGF 265

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
           +P   TF  I+  C+    V  GKQL     K+       VG +++ MY  SG  ++A  
Sbjct: 266 EPTDYTFTNIISTCNGDLGVEEGKQLQGLAFKYGFLSETSVGNAIITMYGNSGMPKEAER 325

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE-GIKSNEFTLASCLNGCSPVA 368
            F S++ K+L ++TA+I+ Y+++G  + A+  F  +  E GI  +   L + L+ CS   
Sbjct: 326 MFSSMSEKNLISWTALISGYSRSGYGKKAVDAFLGLHDELGINFDSTLLTAILDCCSDCN 385

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
            L  G  +H   +K G   D+ V+TALV +YAKC  +  A  VF   + +  AS+N ++ 
Sbjct: 386 NLELGLQIHGFVMKLGCACDVNVATALVDLYAKCEKLQSARIVFDHLSNKGIASFNAILA 445

Query: 429 GYVK-HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYG 486
           G+++  G  E  +  F  +   G  PD +TF  +LS  ++   +E+G+  H  ++K   G
Sbjct: 446 GFLESSGDEEDPMILFNQLRLAGVKPDMVTFSRLLSLLANQASLEKGRSFHAYTVKT--G 503

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
               I     +I +  + G   +            +++ W  L+ A + HG  +
Sbjct: 504 FDTNISVANSVISMYAKCGSIEDAHQMFNIMNCR-DSISWNALISAYALHGQAQ 556



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 171/339 (50%), Gaps = 5/339 (1%)

Query: 141 NLMRESSVKPNQFVL----TSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSM 196
           N+ R S++     +L      L++ +  + D   G+++H+ + K G + DT  GN ++++
Sbjct: 52  NVTRYSTISNEDTLLFNDWPELIKISIGSRDFLLGQAVHSYLVKAGSQDDTFKGNNVLNL 111

Query: 197 YMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTF 256
           Y++  R+    +VF+ +  +++++W +L   + +         I   M   G   N  T 
Sbjct: 112 YVKFNRLDLAQKVFDRMRTRNTITWTSLIKGYLEDNDFQSAFSIAGDMHKFGENFNEHTC 171

Query: 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
            VIL+ACSS  D   G+Q+H   IK   D N  VGTSL+ MY KSG  + A   FDS+  
Sbjct: 172 TVILQACSSPDDRILGEQIHCFVIKSGFDENVFVGTSLIAMYTKSGFFDVAEKVFDSMGF 231

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL 376
           KD+     +I  Y +AG    A++ F+ +  +G +  ++T  + ++ C+    +  G+ L
Sbjct: 232 KDIRCLNFMILEYGRAGNGGKAIEVFKNLLNDGFEPTDYTFTNIISTCNGDLGVEEGKQL 291

Query: 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
             +A K G L +  V  A++ MY   G   +AE +F   + ++  SW  +I GY + G G
Sbjct: 292 QGLAFKYGFLSETSVGNAIITMYGNSGMPKEAERMFSSMSEKNLISWTALISGYSRSGYG 351

Query: 437 EKALEAFRMMLDE-GYVPDEITFVVVLSACSHMGLIEEG 474
           +KA++AF  + DE G   D      +L  CS    +E G
Sbjct: 352 KKAVDAFLGLHDELGINFDSTLLTAILDCCSDCNNLELG 390


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 179/569 (31%), Positives = 299/569 (52%), Gaps = 34/569 (5%)

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSC-SLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           S Y K G + +A  +          S  +++  YSK G       +F  +   D V+W +
Sbjct: 52  SSYAKLGSIPYACKVFDQMPHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNS 111

Query: 123 IITCLDQQGCCQEAAKIFNLM--RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
           +I+     G   ++ K +NLM   + S   N+   ++L+   ++ G  + G  IH  + K
Sbjct: 112 LISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVK 171

Query: 181 YGFESDTLVGNALVSMY-------------------------------MENGRVSYGSRV 209
           +GF S   VG+ LV MY                               M  GRV    R+
Sbjct: 172 FGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRL 231

Query: 210 FEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDV 269
           F  +  +DS+SW ++ + F         + IF +M L+  + +  TF  +L AC  +  +
Sbjct: 232 FFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMAL 291

Query: 270 GFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSY 329
             GKQ+HA+ I+     N  V ++LVDMY K   ++ A   F  +  K++ ++TA++  Y
Sbjct: 292 QEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGY 351

Query: 330 AQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDM 389
            Q G +E A+K F  M+  GI+ ++FTL S ++ C+ +A+L  G   H+ A+ +G +  +
Sbjct: 352 GQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFI 411

Query: 390 FVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDE 449
            VS ALV +Y KCGSI+D+  +F   + +D  +W  ++ GY + G   + +  F  ML  
Sbjct: 412 TVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAH 471

Query: 450 GYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTE 509
           G  PD++TF+ VLSACS  GL+E+G + F S+   +GI P   H+ CMID+  RAG+  E
Sbjct: 472 GLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEE 531

Query: 510 IENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISAT 569
             NFI +   +P+A+ W  LL +C ++GN+++ +  AE L+EL+P   ++YV  S + A 
Sbjct: 532 ARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSSVYAA 591

Query: 570 QGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           +G+W + + +R  +  +G++KEP CSWI+
Sbjct: 592 KGKWEEVARLRKDMRDKGLRKEPGCSWIK 620



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/445 (26%), Positives = 196/445 (44%), Gaps = 66/445 (14%)

Query: 157 SLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ 216
           +L++   ET +    +++H+ I K     +T + N L+S Y + G + Y  +VF+ + H 
Sbjct: 14  ALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHP 73

Query: 217 DSVSWNALFSRFQDYESPDQGLRIF------------------------------YQMLL 246
           +  SWN + S +       +   +F                              Y ++L
Sbjct: 74  NLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLML 133

Query: 247 KG---FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           K    F  N  TF  +L   S    V  G+Q+H H +K        VG+ LVDMY K G 
Sbjct: 134 KNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGM 193

Query: 304 LEDAGVAFDSLANKDLFAY-------------------------------TAIITSYAQA 332
           +  A   FD L  K++  Y                               T++IT + Q 
Sbjct: 194 ISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQN 253

Query: 333 GEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS 392
           G    A+  FR+M+LE ++ +++T  S L  C  V  L  G+ +H+  ++T +  ++FV+
Sbjct: 254 GLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVA 313

Query: 393 TALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV 452
           +ALV MY KC +I  AEAVFK    ++  SW  M+ GY ++G  E+A++ F  M   G  
Sbjct: 314 SALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIE 373

Query: 453 PDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIEN 512
           PD+ T   V+S+C+++  +EEG + F +     G+   I     ++ + G+ G   +   
Sbjct: 374 PDDFTLGSVISSCANLASLEEGAQ-FHARALTSGLISFITVSNALVTLYGKCGSIEDSHR 432

Query: 513 FITETKLTPNALVWENLLGACSWHG 537
              E     + + W  L+   +  G
Sbjct: 433 LFNEISFK-DEVTWTALVSGYAQFG 456



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 168/326 (51%), Gaps = 5/326 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E +KR+F  M E + +SW +++ G+ ++G  +  + +F  MK    +  +++  +VL  
Sbjct: 225 VEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTA 284

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 ++ G+ VHA  IR     + F++ +LVDMY KC    +A  VF ++   +VV+W
Sbjct: 285 CGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSW 344

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A++    Q G  +EA K F+ M++  ++P+ F L S++ +         G   HA    
Sbjct: 345 TAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALT 404

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G  S   V NALV++Y + G +    R+F  I+ +D V+W AL S +  +   ++ + +
Sbjct: 405 SGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGL 464

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTI-KHSLDGNHVVGTSLVDMYD 299
           F  ML  G KP+  TFI +L ACS    V  G Q+    I +H +       T ++D++ 
Sbjct: 465 FESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFS 524

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAI 325
           ++G +E+A     +  NK  F+  AI
Sbjct: 525 RAGRIEEA----RNFINKMPFSPDAI 546



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 119/287 (41%), Gaps = 68/287 (23%)

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
           +  +LK C    +    K LH+H IK        +  +L+  Y K G +  A   FD + 
Sbjct: 12  YCALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMP 71

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFTLASCLNGC---------- 364
           + +L+++  I+++Y++ G        F  M R +G+  N  +L S   GC          
Sbjct: 72  HPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWN--SLISGYAGCGLIYQSVKAY 129

Query: 365 -----------------SPVATLAN-------GRLLHSIAVKTGHLLDMFVSTALVAMYA 400
                            S +  LA+       GR +H   VK G +  +FV + LV MY+
Sbjct: 130 NLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYS 189

Query: 401 K-------------------------------CGSIDDAEAVFKGSALRDTASWNMMIGG 429
           K                               CG ++D++ +F     RD+ SW  MI G
Sbjct: 190 KMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITG 249

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
           + ++GL   A++ FR M  E    D+ TF  VL+AC  +  ++EGK+
Sbjct: 250 FTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQ 296



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/274 (21%), Positives = 104/274 (37%), Gaps = 65/274 (23%)

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA------------ 408
           L  C         + LHS  +KT    + F+   L++ YAK GSI  A            
Sbjct: 16  LKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNL 75

Query: 409 -------------------EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML-- 447
                              E +F     RD  SWN +I GY   GL  ++++A+ +ML  
Sbjct: 76  YSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKN 135

Query: 448 DEGYVPDEITFVVVLSACSHMGLIEEGKK----------------------------HFS 479
           D  +  + ITF  +L   S  G ++ G++                              S
Sbjct: 136 DGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMIS 195

Query: 480 SIKKIYGITP--TIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
             +K++   P   +  +  +I  L R G+  + +    E +   +++ W +++   + +G
Sbjct: 196 CARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMR-ERDSISWTSMITGFTQNG 254

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQG 571
            ++ D  D  + ++LE      Y F S ++A  G
Sbjct: 255 -LDRDAIDIFREMKLENLQMDQYTFGSVLTACGG 287


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 172/540 (31%), Positives = 292/540 (54%), Gaps = 32/540 (5%)

Query: 91  SLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLM-RESSVK 149
           +L+  YSK        +VF+ +   D+V+W ++I+    +G   ++ K +NLM       
Sbjct: 80  TLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFN 139

Query: 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENG-------- 201
            N+  L++++   ++ G    G  +H  + K+GF+S   VG+ LV MY + G        
Sbjct: 140 LNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQA 199

Query: 202 -----------------------RVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
                                  R+    ++F  +  +DS+SW A+ + F       + +
Sbjct: 200 FDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAI 259

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            +F +M L+  + +  TF  +L AC  +  +  GKQ+HA+ I+     N  VG++LVDMY
Sbjct: 260 DLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMY 319

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K   ++ A   F  +  K++ ++TA++  Y Q G +E A+K F  M+  GI+ ++FTL 
Sbjct: 320 CKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLG 379

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S ++ C+ +A+L  G   H  A+ +G +  + VS ALV +Y KCGSI+D+  +F   +  
Sbjct: 380 SVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYV 439

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D  SW  ++ GY + G   + L  F  ML  G+ PD++TF+ VLSACS  GL+++G + F
Sbjct: 440 DEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIF 499

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            S+ K + I P   H+ CMID+  RAG+  E   FI +   +P+A+ W +LL +C +H N
Sbjct: 500 ESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRN 559

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           +E+ +  AE LL+LEP   ++Y+  S I A +G+W + + +R  +  +G++KEP CSWI+
Sbjct: 560 MEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIK 619



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 113/472 (23%), Positives = 213/472 (45%), Gaps = 68/472 (14%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM--KDMEK-------------- 47
           A+RVF  MP+ N+ SWN LL+ Y++     ++  +F +M  +DM                
Sbjct: 63  ARRVFDQMPQRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFL 122

Query: 48  ----------------KFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCS 91
                             ++ +LST+L   +  G +  G  VH   ++ G     F+   
Sbjct: 123 LQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSP 182

Query: 92  LVDMYSKCGLA-------------------------------DNALKVFYRIKDPDVVAW 120
           LVDMYSK GL                                +++ ++FY +++ D ++W
Sbjct: 183 LVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISW 242

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    Q G  +EA  +F  MR  +++ +Q+   S++ A       + G+ +HA I +
Sbjct: 243 TAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIR 302

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             ++ +  VG+ALV MY +   +     VF  +  ++ VSW A+   +      ++ ++I
Sbjct: 303 TDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKI 362

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  M   G +P+  T   ++ +C++L+ +  G Q H   +   L     V  +LV +Y K
Sbjct: 363 FCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGK 422

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +ED+   F  ++  D  ++TA+++ YAQ G+A   L+ F  M   G K ++ T    
Sbjct: 423 CGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGV 482

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLL---DMFVSTALVAMYAKCGSIDDAE 409
           L+ CS    +  G  +    +K   ++   D +  T ++ ++++ G +++A 
Sbjct: 483 LSACSRAGLVQKGNQIFESMIKEHRIIPIEDHY--TCMIDLFSRAGRLEEAR 532



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/411 (27%), Positives = 180/411 (43%), Gaps = 64/411 (15%)

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228
           R  + IH  I K     +  + N LVS Y +  R++Y  RVF+ +  ++  SWN L S +
Sbjct: 26  RDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSY 85

Query: 229 QDYESPDQGLRIFYQM--------------------LLKG------------FKPNMCTF 256
                  +  R+F+ M                    LL+             F  N    
Sbjct: 86  SKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIAL 145

Query: 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC------------- 303
             +L   S    V  G Q+H H +K        VG+ LVDMY K+G              
Sbjct: 146 STMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPE 205

Query: 304 ------------------LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM 345
                             +ED+   F  +  KD  ++TA+I  + Q G    A+  FR+M
Sbjct: 206 KNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREM 265

Query: 346 RLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSI 405
           RLE ++ +++T  S L  C  V  L  G+ +H+  ++T +  ++FV +ALV MY KC SI
Sbjct: 266 RLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSI 325

Query: 406 DDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC 465
             AE VF+    ++  SW  M+ GY ++G  E+A++ F  M + G  PD+ T   V+S+C
Sbjct: 326 KSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSC 385

Query: 466 SHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE 516
           +++  +EEG + F     + G+   I     ++ + G+ G   +     +E
Sbjct: 386 ANLASLEEGAQ-FHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSE 435



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 172/330 (52%), Gaps = 2/330 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E ++++F  M E + +SW A++ G+ ++G  ++ + LF  M+    +  +++  +VL  
Sbjct: 224 IEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTA 283

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 ++ G+ VHA  IR     + F+  +LVDMY KC    +A  VF ++   +VV+W
Sbjct: 284 CGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSW 343

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A++    Q G  +EA KIF  M+ + ++P+ F L S++ +         G   H     
Sbjct: 344 TAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALV 403

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G  S   V NALV++Y + G +    R+F  +++ D VSW AL S +  +   ++ LR+
Sbjct: 404 SGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRL 463

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK-HSLDGNHVVGTSLVDMYD 299
           F  ML  GFKP+  TFI +L ACS    V  G Q+    IK H +       T ++D++ 
Sbjct: 464 FESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFS 523

Query: 300 KSGCLEDAGVAFDSLA-NKDLFAYTAIITS 328
           ++G LE+A    + +  + D   + ++++S
Sbjct: 524 RAGRLEEARKFINKMPFSPDAIGWASLLSS 553


>gi|7523419|emb|CAB86438.1| putative protein [Arabidopsis thaliana]
          Length = 1017

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 189/600 (31%), Positives = 316/600 (52%), Gaps = 3/600 (0%)

Query: 4   AKRVFKSMPEL-NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           A+R+F    E  + V WN++L+ Y+ SG   + + LF  M       + +++ + L    
Sbjct: 199 ARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACD 258

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSC-SLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
              Y K G+ +HA  ++      +   C +L+ MY++CG    A ++  ++ + DVV W 
Sbjct: 259 GFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWN 318

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           ++I    Q    +EA + F+ M  +  K ++  +TS++ A+    +   G  +HA + K+
Sbjct: 319 SLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKH 378

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G++S+  VGN L+ MY +     Y  R F  +  +D +SW  + + +   +   + L +F
Sbjct: 379 GWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELF 438

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
             +  K  + +      IL+A S L  +   K++H H ++  L  + V+   LVD+Y K 
Sbjct: 439 RDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL-LDTVIQNELVDVYGKC 497

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
             +  A   F+S+  KD+ ++T++I+S A  G    A++ FR+M   G+ ++   L   L
Sbjct: 498 RNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCIL 557

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           +  + ++ L  GR +H   ++ G  L+  ++ A+V MYA CG +  A+AVF     +   
Sbjct: 558 SAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLL 617

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
            +  MI  Y  HG G+ A+E F  M  E   PD I+F+ +L ACSH GL++EG+     +
Sbjct: 618 QYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIM 677

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
           +  Y + P  +H+ C++D+LGRA    E   F+   K  P A VW  LL AC  H   E+
Sbjct: 678 EHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEI 737

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
            E  A++LLELEPK   N V  S++ A QGRWND   VRA + + G++K P CSWIE+DG
Sbjct: 738 GEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDG 797



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 155/571 (27%), Positives = 266/571 (46%), Gaps = 24/571 (4%)

Query: 5   KRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANS 64
           ++VF  MP+    +WN ++  Y  +G+    + L+ +M+         S   +LK  A  
Sbjct: 99  EKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKL 158

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP-DVVAWGAI 123
             I++G  +H++ ++LG     F+  +LV MY+K      A ++F   ++  D V W +I
Sbjct: 159 RDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSI 218

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           ++     G   E  ++F  M  +   PN + + S + A       + G+ IHA + K   
Sbjct: 219 LSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSST 278

Query: 184 ESDTL-VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            S  L V NAL++MY   G++    R+   + + D V+WN+L   +       + L  F 
Sbjct: 279 HSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFS 338

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            M+  G K +  +   I+ A   LS++  G +LHA+ IKH  D N  VG +L+DMY K  
Sbjct: 339 DMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCN 398

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
                G AF  + +KDL ++T +I  YAQ      AL+ FR +  + ++ +E  L S L 
Sbjct: 399 LTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILR 458

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
             S + ++   + +H   ++ G LLD  +   LV +Y KC ++  A  VF+    +D  S
Sbjct: 459 ASSVLKSMLIVKEIHCHILRKG-LLDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVS 517

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSI 481
           W  MI     +G   +A+E FR M++ G   D +  + +LSA + +  + +G++ H   +
Sbjct: 518 WTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLL 577

Query: 482 KKIYGITPTI-----KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
           +K + +  +I       +AC  D+      F  IE            L + +++ A   H
Sbjct: 578 RKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIER--------KGLLQYTSMINAYGMH 629

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           G         +  +EL  KM    V P  IS
Sbjct: 630 GC-------GKAAVELFDKMRHENVSPDHIS 653


>gi|225216998|gb|ACN85287.1| EMB2261 putative [Oryza australiensis]
          Length = 626

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 177/538 (32%), Positives = 298/538 (55%), Gaps = 7/538 (1%)

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLA-DNALKVFYRIKDPDVVAWGAIITC 126
           + G  +HA A R G   D++L+ +L+  Y +      +AL+ F  +   DVVA  +I+  
Sbjct: 55  RLGYCLHARAARAGFLADRYLANALLAFYVRLPRHLPHALRAFDDLPHRDVVAHSSILAA 114

Query: 127 LDQQGCCQEAAKIFNLM---RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
             + G  + A      M    +  V PN   L++ V+A     D++ G  +H  +   G 
Sbjct: 115 FLRAGMPRRALASLRAMLAGADDDVSPNAHALSAAVKACAVLRDRKAGACLHGSVLVRGM 174

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D +V ++LV MY          + FE +   D + + +L S F   +  ++ +R F  
Sbjct: 175 GDDDVVLSSLVDMYGHVAAPGDARKAFEEMRGPDGICYTSLISAFVRNDWFEEAVRWFRS 234

Query: 244 ML-LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           ML + G +P+ CTF  ++ A  +L     G+Q HA  +   L GN +V +S +DMY K G
Sbjct: 235 MLTMNGVRPDGCTFGSMMTALGNLKRGSQGRQAHAQVVTRGLCGNVIVESSTLDMYAKCG 294

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            + +A   FD +  ++  +  A++  Y Q GE E  +  FR+M  E    + ++L + L 
Sbjct: 295 LMVEARKVFDRMEVRNEVSRCALLGGYCQNGEYEKVIALFREMDKE--DGDWYSLGTVLR 352

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+ ++++  G+ +H   ++ G   D+ V +ALV +YAKCG++D A +VF+ S +R+T +
Sbjct: 353 ACAGLSSVKPGKEIHCRFLRMGGWRDVVVESALVDLYAKCGAVDYACSVFEASTVRNTIT 412

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN MI G+ ++G GE+A+  F  M+ EG  PD I+F+ VL ACSH G++E+G+ +F S+ 
Sbjct: 413 WNAMISGFAQNGHGERAINLFNRMVREGPRPDYISFIGVLFACSHTGMVEQGRNYFDSMC 472

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           K YGI P I+H+ CM+D+L R     E E+ I E+    ++ +W  +LGA + H N ++ 
Sbjct: 473 KDYGIAPGIEHYNCMVDLLSRVELLEEAEDLINESPFRNDSSLWAAILGASATHSNPDVA 532

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           E+ A+K++ELEP+   +Y+   ++  T GRW D   +R L+ S+ +KKEP  SWI+ +
Sbjct: 533 ERVAKKMMELEPQYHLSYILLENVYRTVGRWEDALEIRRLMESRKVKKEPGMSWIDAN 590



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 103/451 (22%), Positives = 208/451 (46%), Gaps = 8/451 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM---KDMEKKFSKFSLSTVLKG 60
           A R F  +P  +VV+ +++L  +  +G  ++ +    +M    D +   +  +LS  +K 
Sbjct: 93  ALRAFDDLPHRDVVAHSSILAAFLRAGMPRRALASLRAMLAGADDDVSPNAHALSAAVKA 152

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A     KAG  +H   +  G   D  +  SLVDMY       +A K F  ++ PD + +
Sbjct: 153 CAVLRDRKAGACLHGSVLVRGMGDDDVVLSSLVDMYGHVAAPGDARKAFEEMRGPDGICY 212

Query: 121 GAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            ++I+   +    +EA + F +++  + V+P+     S++ A         G   HA + 
Sbjct: 213 TSLISAFVRNDWFEEAVRWFRSMLTMNGVRPDGCTFGSMMTALGNLKRGSQGRQAHAQVV 272

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
             G   + +V ++ + MY + G +    +VF+ +  ++ VS  AL   +      ++ + 
Sbjct: 273 TRGLCGNVIVESSTLDMYAKCGLMVEARKVFDRMEVRNEVSRCALLGGYCQNGEYEKVIA 332

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F +M  +    +  +   +L+AC+ LS V  GK++H   ++     + VV ++LVD+Y 
Sbjct: 333 LFREMDKE--DGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMGGWRDVVVESALVDLYA 390

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G ++ A   F++   ++   + A+I+ +AQ G  E A+  F +M  EG + +  +   
Sbjct: 391 KCGAVDYACSVFEASTVRNTITWNAMISGFAQNGHGERAINLFNRMVREGPRPDYISFIG 450

Query: 360 CLNGCSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
            L  CS    +  GR    S+    G    +     +V + ++   +++AE +   S  R
Sbjct: 451 VLFACSHTGMVEQGRNYFDSMCKDYGIAPGIEHYNCMVDLLSRVELLEEAEDLINESPFR 510

Query: 419 -DTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
            D++ W  ++G    H   + A    + M++
Sbjct: 511 NDSSLWAAILGASATHSNPDVAERVAKKMME 541


>gi|334186228|ref|NP_191896.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646951|gb|AEE80472.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 884

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 189/600 (31%), Positives = 316/600 (52%), Gaps = 3/600 (0%)

Query: 4   AKRVFKSMPEL-NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           A+R+F    E  + V WN++L+ Y+ SG   + + LF  M       + +++ + L    
Sbjct: 236 ARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACD 295

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSC-SLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
              Y K G+ +HA  ++      +   C +L+ MY++CG    A ++  ++ + DVV W 
Sbjct: 296 GFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWN 355

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           ++I    Q    +EA + F+ M  +  K ++  +TS++ A+    +   G  +HA + K+
Sbjct: 356 SLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKH 415

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G++S+  VGN L+ MY +     Y  R F  +  +D +SW  + + +   +   + L +F
Sbjct: 416 GWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELF 475

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
             +  K  + +      IL+A S L  +   K++H H ++  L  + V+   LVD+Y K 
Sbjct: 476 RDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL-LDTVIQNELVDVYGKC 534

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
             +  A   F+S+  KD+ ++T++I+S A  G    A++ FR+M   G+ ++   L   L
Sbjct: 535 RNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCIL 594

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           +  + ++ L  GR +H   ++ G  L+  ++ A+V MYA CG +  A+AVF     +   
Sbjct: 595 SAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLL 654

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
            +  MI  Y  HG G+ A+E F  M  E   PD I+F+ +L ACSH GL++EG+     +
Sbjct: 655 QYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIM 714

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
           +  Y + P  +H+ C++D+LGRA    E   F+   K  P A VW  LL AC  H   E+
Sbjct: 715 EHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEI 774

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
            E  A++LLELEPK   N V  S++ A QGRWND   VRA + + G++K P CSWIE+DG
Sbjct: 775 GEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDG 834



 Score =  211 bits (537), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 156/572 (27%), Positives = 267/572 (46%), Gaps = 24/572 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF  MP+    +WN ++  Y  +G+    + L+ +M+         S   +LK  A 
Sbjct: 135 AEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAK 194

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP-DVVAWGA 122
              I++G  +H++ ++LG     F+  +LV MY+K      A ++F   ++  D V W +
Sbjct: 195 LRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNS 254

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I++     G   E  ++F  M  +   PN + + S + A       + G+ IHA + K  
Sbjct: 255 ILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSS 314

Query: 183 FESDTL-VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
             S  L V NAL++MY   G++    R+   + + D V+WN+L   +       + L  F
Sbjct: 315 THSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFF 374

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
             M+  G K +  +   I+ A   LS++  G +LHA+ IKH  D N  VG +L+DMY K 
Sbjct: 375 SDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKC 434

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
                 G AF  + +KDL ++T +I  YAQ      AL+ FR +  + ++ +E  L S L
Sbjct: 435 NLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSIL 494

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
              S + ++   + +H   ++ G LLD  +   LV +Y KC ++  A  VF+    +D  
Sbjct: 495 RASSVLKSMLIVKEIHCHILRKG-LLDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVV 553

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSS 480
           SW  MI     +G   +A+E FR M++ G   D +  + +LSA + +  + +G++ H   
Sbjct: 554 SWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYL 613

Query: 481 IKKIYGITPTI-----KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
           ++K + +  +I       +AC  D+      F  IE            L + +++ A   
Sbjct: 614 LRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIER--------KGLLQYTSMINAYGM 665

Query: 536 HGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           HG         +  +EL  KM    V P  IS
Sbjct: 666 HGC-------GKAAVELFDKMRHENVSPDHIS 690



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 126/457 (27%), Positives = 212/457 (46%), Gaps = 11/457 (2%)

Query: 87  FLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRES 146
           FL+  LV MY KCG  D+A KVF  + D    AW  +I      G    A  ++  MR  
Sbjct: 117 FLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVE 176

Query: 147 SVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYG 206
            V        +L++A  +  D R G  +H+++ K G+ S   + NALVSMY +N  +S  
Sbjct: 177 GVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAA 236

Query: 207 SRVFEAIAHQ-DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSS 265
            R+F+    + D+V WN++ S +       + L +F +M + G  PN  T +  L AC  
Sbjct: 237 RRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDG 296

Query: 266 LSDVGFGKQLHAHTIKHSLDGNHV-VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA 324
            S    GK++HA  +K S   + + V  +L+ MY + G +  A      + N D+  + +
Sbjct: 297 FSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNS 356

Query: 325 IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           +I  Y Q    + AL+ F  M   G KS+E ++ S +     ++ L  G  LH+  +K G
Sbjct: 357 LIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHG 416

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
              ++ V   L+ MY+KC         F     +D  SW  +I GY ++    +ALE FR
Sbjct: 417 WDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFR 476

Query: 445 MMLDEGYVPDEITFVVVLSACS---HMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDIL 501
            +  +    DE+    +L A S    M +++E   H   ++K  G+  T+     ++D+ 
Sbjct: 477 DVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHI--LRK--GLLDTVIQNE-LVDVY 531

Query: 502 GRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           G+              K   + + W +++ + + +GN
Sbjct: 532 GKCRNMGYATRVFESIK-GKDVVSWTSMISSSALNGN 567



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 153/336 (45%), Gaps = 17/336 (5%)

Query: 208 RVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFK--------PNMCTFIVI 259
           R+  +I  + S   N      Q  + P   L  F  +L + F+          +  F  +
Sbjct: 27  RLHCSIPTEPSCRRNPFRQSNQPVQVPSPKLACFDGVLTEAFQRLDVSENNSPVEAFAYV 86

Query: 260 LKACSSLSDVGFGKQLHAHTIK--HSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK 317
           L+ C     V  G+QLH+   K   S + + + G  LV MY K G L+DA   FD + ++
Sbjct: 87  LELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAG-KLVFMYGKCGSLDDAEKVFDEMPDR 145

Query: 318 DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLH 377
             FA+  +I +Y   GE   AL  +  MR+EG+     +  + L  C+ +  + +G  LH
Sbjct: 146 TAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELH 205

Query: 378 SIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DTASWNMMIGGYVKHGLG 436
           S+ VK G+    F+  ALV+MYAK   +  A  +F G   + D   WN ++  Y   G  
Sbjct: 206 SLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKS 265

Query: 437 EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFAC 496
            + LE FR M   G  P+  T V  L+AC      + GK+  +S+ K    T + + + C
Sbjct: 266 LETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLK--SSTHSSELYVC 323

Query: 497 --MIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
             +I +  R GK  + E  + +     + + W +L+
Sbjct: 324 NALIAMYTRCGKMPQAERILRQMN-NADVVTWNSLI 358


>gi|225462555|ref|XP_002267326.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Vitis vinifera]
          Length = 708

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 184/600 (30%), Positives = 309/600 (51%), Gaps = 1/600 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+RVF+ M  L V  WNA++ GYA+   G + + +   M+        F+    LKG
Sbjct: 109 IEDAERVFECMDNLVVGCWNAMIGGYAQCSYGFESLKIVSVMQYKGISMDAFTFINALKG 168

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
               G +  G+ +H + I+        +  SL+DMY K G    ALKVF R++D D+++W
Sbjct: 169 CLVVGNLNFGRQIHGLIIQSEVGFSTAVMNSLMDMYFKNGGGLYALKVFDRLQDKDIISW 228

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +   L Q    +E  + F+ +  + +KPN    + L R   E  D   G   H +  +
Sbjct: 229 NTVFAGLSQGDDAREIGRFFHKLMLTGLKPNCVTFSILFRFCGEALDLVSGLQFHCLAFR 288

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +G   +  V ++L++M+   G +     VF++   +   + N + S +       + L +
Sbjct: 289 FGISDEASVTSSLINMFSRCGAMRMACLVFDSAPFKSIHTCNEMISGYNLNCHNAEALNL 348

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  +   G + + CTF   L+AC    +   G+Q+H   +K        V +SL+  Y  
Sbjct: 349 FCNLNGLGLEADECTFSSALEACFRTENQKLGRQMHGTIVKSGFASQGYVCSSLLKCYVG 408

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L+D+   F+ +   DL ++ A+I++    G +  A+    +++  G K +EF   S 
Sbjct: 409 FGLLDDSFEFFNGVERLDLVSWGAMISALVHKGYSSEAIGLLNRLKEAGGKPDEFIFGSI 468

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF-KGSALRD 419
            N C+ +A     + +HS+ VK G+   +FV++A++  YAKCG I++A  VF + S  RD
Sbjct: 469 FNCCAGIAAYRQTKSVHSLVVKMGYEAHVFVASAVIDAYAKCGDIENARRVFDQTSRFRD 528

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
              +N M+  Y  HGL  +A+E F  M      P + TFV V+SACSH+GL+E+G   F 
Sbjct: 529 VILFNTMVMAYAHHGLVREAVETFEKMKLATLEPSQATFVSVISACSHLGLVEQGDIFFK 588

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           S+   YG+ P+  ++ C++D+  R G   + ++ I      P   +W +LL  C  HGN 
Sbjct: 589 SMNLDYGMDPSPDNYGCLVDLFSRNGFLEDAKHIIETMPFPPWPAIWRSLLNGCRIHGNK 648

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           EL E  A+KLL+L P+ ++ YV  S + + +G W+D + VR  +  +G+ K+P CSWIE+
Sbjct: 649 ELGEWAAKKLLQLVPENDAAYVLLSKVYSEEGSWSDAAKVRKGMIERGLWKDPGCSWIEI 708



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 147/565 (26%), Positives = 263/565 (46%), Gaps = 6/565 (1%)

Query: 6   RVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSG 65
           +VF  MP  N+VSW  +++G  ++G+ +  + ++  M       ++F+L  V K  A  G
Sbjct: 13  KVFGEMPMKNLVSWTLVVSGAVQNGEFEMGLGVYLEMIRTGLVPNEFALGCVTKACAALG 72

Query: 66  YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT 125
             + G  VH  A+++G   + F+  S+++MY+K G  ++A +VF  + +  V  W A+I 
Sbjct: 73  GKELGLCVHCFALKVGMEKNPFVGSSILNMYAKLGDIEDAERVFECMDNLVVGCWNAMIG 132

Query: 126 CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
              Q     E+ KI ++M+   +  + F   + ++     G+   G  IH +I +     
Sbjct: 133 GYAQCSYGFESLKIVSVMQYKGISMDAFTFINALKGCLVVGNLNFGRQIHGLIIQSEVGF 192

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
            T V N+L+ MY +NG   Y  +VF+ +  +D +SWN +F+     +   +  R F++++
Sbjct: 193 STAVMNSLMDMYFKNGGGLYALKVFDRLQDKDIISWNTVFAGLSQGDDAREIGRFFHKLM 252

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
           L G KPN  TF ++ + C    D+  G Q H    +  +     V +SL++M+ + G + 
Sbjct: 253 LTGLKPNCVTFSILFRFCGEALDLVSGLQFHCLAFRFGISDEASVTSSLINMFSRCGAMR 312

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
            A + FDS   K +     +I+ Y        AL  F  +   G++++E T +S L  C 
Sbjct: 313 MACLVFDSAPFKSIHTCNEMISGYNLNCHNAEALNLFCNLNGLGLEADECTFSSALEACF 372

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
                  GR +H   VK+G     +V ++L+  Y   G +DD+   F G    D  SW  
Sbjct: 373 RTENQKLGRQMHGTIVKSGFASQGYVCSSLLKCYVGFGLLDDSFEFFNGVERLDLVSWGA 432

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIY 485
           MI   V  G   +A+     + + G  PDE  F  + + C+ +    + K   S + K+ 
Sbjct: 433 MISALVHKGYSSEAIGLLNRLKEAGGKPDEFIFGSIFNCCAGIAAYRQTKSVHSLVVKM- 491

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE--LDE 543
           G    +   + +ID   + G          +T    + +++  ++ A + HG +   ++ 
Sbjct: 492 GYEAHVFVASAVIDAYAKCGDIENARRVFDQTSRFRDVILFNTMVMAYAHHGLVREAVET 551

Query: 544 KDAEKLLELEPKMESNYVFPSDISA 568
            +  KL  LEP   S   F S ISA
Sbjct: 552 FEKMKLATLEP---SQATFVSVISA 573



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 186/389 (47%)

Query: 95  MYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFV 154
           MY+KCG     LKVF  +   ++V+W  +++   Q G  +    ++  M  + + PN+F 
Sbjct: 1   MYTKCGFLAGGLKVFGEMPMKNLVSWTLVVSGAVQNGEFEMGLGVYLEMIRTGLVPNEFA 60

Query: 155 LTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA 214
           L  + +A    G +  G  +H    K G E +  VG+++++MY + G +    RVFE + 
Sbjct: 61  LGCVTKACAALGGKELGLCVHCFALKVGMEKNPFVGSSILNMYAKLGDIEDAERVFECMD 120

Query: 215 HQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ 274
           +     WNA+   +       + L+I   M  KG   +  TFI  LK C  + ++ FG+Q
Sbjct: 121 NLVVGCWNAMIGGYAQCSYGFESLKIVSVMQYKGISMDAFTFINALKGCLVVGNLNFGRQ 180

Query: 275 LHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGE 334
           +H   I+  +  +  V  SL+DMY K+G    A   FD L +KD+ ++  +    +Q  +
Sbjct: 181 IHGLIIQSEVGFSTAVMNSLMDMYFKNGGGLYALKVFDRLQDKDIISWNTVFAGLSQGDD 240

Query: 335 AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA 394
           A    + F K+ L G+K N  T +     C     L +G   H +A + G   +  V+++
Sbjct: 241 AREIGRFFHKLMLTGLKPNCVTFSILFRFCGEALDLVSGLQFHCLAFRFGISDEASVTSS 300

Query: 395 LVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD 454
           L+ M+++CG++  A  VF  +  +   + N MI GY  +    +AL  F  +   G   D
Sbjct: 301 LINMFSRCGAMRMACLVFDSAPFKSIHTCNEMISGYNLNCHNAEALNLFCNLNGLGLEAD 360

Query: 455 EITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           E TF   L AC      + G++   +I K
Sbjct: 361 ECTFSSALEACFRTENQKLGRQMHGTIVK 389


>gi|115458828|ref|NP_001053014.1| Os04g0463800 [Oryza sativa Japonica Group]
 gi|38347057|emb|CAE04357.2| OSJNBa0060P14.4 [Oryza sativa Japonica Group]
 gi|113564585|dbj|BAF14928.1| Os04g0463800 [Oryza sativa Japonica Group]
          Length = 767

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 182/605 (30%), Positives = 330/605 (54%), Gaps = 8/605 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNG---YAESGDG-QKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           A R+F  MPE +VV+W A+++G     + G+G   ++ +  S  D   + +  ++ + L+
Sbjct: 164 AVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLE 223

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
                G +  G  +H   ++ G      +  SL  MY+KC   ++A  +F  + + D+V+
Sbjct: 224 ACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVS 283

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W ++I    + G  ++A ++F  M ES ++P++ V++ L+         R G++ HA I 
Sbjct: 284 WTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIV 343

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           +  F    L+GNAL+SMY +  +V   + VF  +  +D+ SW+++   +       + L 
Sbjct: 344 RRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLE 403

Query: 240 IFYQMLLKG---FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
           ++ +M  +    F+ +  + I I+ +CS L  +  G+  H ++IKH    N  V  +L+ 
Sbjct: 404 LYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALIS 463

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           MY + G  + A   F  +  KD+  ++A+I+SY+  G ++ AL  + +M  EG+K N  T
Sbjct: 464 MYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSAT 523

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
           L S ++ C+ +A L +G L+HS     G   D+ + TALV MY KCG +  A  +F    
Sbjct: 524 LVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSML 583

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            RD  +WN+MI GY  HG   +AL+ F MM      P+ +TF+ +LSAC H GL+++G++
Sbjct: 584 ERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRE 643

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
            F+ +++ Y + P +KH+ACM+D+LG++G   E E+ ++   + P+  +W  LLGAC  H
Sbjct: 644 LFTRMEE-YSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMH 702

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSW 596
            N E+  + A+K    +P+ +  Y+  S+   +  +WN+   +R ++ + G++K    S 
Sbjct: 703 DNFEMGLRVAKKAFASDPENDGYYILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWST 762

Query: 597 IEVDG 601
           I++ G
Sbjct: 763 IDICG 767



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/436 (26%), Positives = 206/436 (47%), Gaps = 4/436 (0%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E A+ +F  +PE ++VSW +L+  Y  +G  +K + LF  M++   +  +  +S +L G 
Sbjct: 267 EDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGL 326

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
            N   ++ G+  HA  +R        +  +L+ MY+KC   D A  VF  +   D  +W 
Sbjct: 327 GNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWS 386

Query: 122 AIITCLDQQGC---CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +++    + G    C E  +      +   + +   L S++ + +  G  R G+S H   
Sbjct: 387 SMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYS 446

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K+    ++ V NAL+SMY   G      ++F  +  +D V+W+AL S +         L
Sbjct: 447 IKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDAL 506

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            ++ QML +G KPN  T + ++ +C++L+ +  G+ +H+H     L+ +  + T+LVDMY
Sbjct: 507 LLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMY 566

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G L  A   FDS+  +D+  +  +I+ Y   GEA  ALK F  M    +K N  T  
Sbjct: 567 MKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFL 626

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           + L+ C     +  GR L +   +     ++     +V +  K G + +AE V     + 
Sbjct: 627 AILSACCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIE 686

Query: 419 -DTASWNMMIGGYVKH 433
            D   W  ++G    H
Sbjct: 687 PDGGIWGTLLGACKMH 702



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 135/559 (24%), Positives = 258/559 (46%), Gaps = 19/559 (3%)

Query: 19  WNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAI 78
           WN+LL     + D    +     M+    + S+F+   V    A  G +  G  VHA ++
Sbjct: 75  WNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSV 134

Query: 79  RLGCALDK---FLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT-CLDQQGCCQ 134
           R G         ++ SLV MY++CG   +A+++F  + + DVVAW A+I+ C+    C +
Sbjct: 135 RFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGE 194

Query: 135 EAAKIFNLMR---ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGN 191
             + +  ++R   +   +PN   + S + A    G+   G  +H    K G      V +
Sbjct: 195 GLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVS 254

Query: 192 ALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKP 251
           +L SMY +         +F  +  +D VSW +L   +      ++ + +F  M   G +P
Sbjct: 255 SLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQP 314

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF 311
           +      +L    + + V  GK  HA  ++ +   + ++G +L+ MY K   ++ A   F
Sbjct: 315 DEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVF 374

Query: 312 DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLA 371
             L  +D  ++++++ +Y +AG     L+ +R+M+       E+   S ++  S  + L 
Sbjct: 375 RMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLG 434

Query: 372 NGRL---LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
             RL    H  ++K     +  V+ AL++MY +CG+ D A  +F     +D  +W+ +I 
Sbjct: 435 RLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALIS 494

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGIT 488
            Y   G  + AL  +  ML EG  P+  T V V+S+C+++  +E G+   S +K + G+ 
Sbjct: 495 SYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDV-GLE 553

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEK 548
             +     ++D+  + G+   I   + ++ L  + + W  ++     HG       +A +
Sbjct: 554 CDLSICTALVDMYMKCGQLG-IARKMFDSMLERDVVTWNVMISGYGMHG-------EAIQ 605

Query: 549 LLELEPKMESNYVFPSDIS 567
            L+L   ME   V P+ ++
Sbjct: 606 ALKLFSMMERGNVKPNSLT 624



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 138/479 (28%), Positives = 221/479 (46%), Gaps = 16/479 (3%)

Query: 72  VVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQG 131
            +HA+A+  G +     +  LV  YS  GL   A   F     PD   W +++    +  
Sbjct: 27  TLHALAVTSGLSPRPDFAAKLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRAS 86

Query: 132 CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF---ESDTL 188
                      MR S  +P++F    +  A  E G    G ++HA   ++G    +    
Sbjct: 87  DFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSVRFGLLEGDGSVA 146

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK- 247
           V ++LV MY   G V    R+F+ +  +D V+W A+ S         +GL    +M+   
Sbjct: 147 VASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSA 206

Query: 248 ---GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
              G +PN  T    L+AC  L ++  G  LH   +K  +     V +SL  MY K    
Sbjct: 207 GDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDST 266

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
           EDA + F  L  KDL ++T++I +Y +AG AE A++ F  M   G++ +E  ++  L G 
Sbjct: 267 EDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGL 326

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
              A +  G+  H+  V+      + +  AL++MYAKC  +D A  VF+    RDT SW+
Sbjct: 327 GNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWS 386

Query: 425 MMIGGYVKHGLGEKALEAFRMML----DEGYVPDEITFVVVLSACSHMGLIEEGKK-HFS 479
            M+  Y K GL  K LE +R M     DE +  D  + + ++S+CS +G +  G+  H  
Sbjct: 387 SMVVAYCKAGLDLKCLELYREMQFRDKDE-FEYDTNSLISIISSCSRLGRLRLGQSAHCY 445

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           SIK + G   ++ +   +I + GR G F          K T + + W  L+ + S  G+
Sbjct: 446 SIKHLAGENSSVAN--ALISMYGRCGNFDVARKIFGMVK-TKDVVTWSALISSYSHLGH 501



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 162/310 (52%), Gaps = 3/310 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK---KFSKFSLSTV 57
           +++A  VF+ + + +  SW++++  Y ++G   K + L+  M+  +K   ++   SL ++
Sbjct: 367 VDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISI 426

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
           +   +  G ++ GQ  H  +I+     +  ++ +L+ MY +CG  D A K+F  +K  DV
Sbjct: 427 ISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDV 486

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           V W A+I+     G  ++A  +++ M    VKPN   L S++ +         GE IH+ 
Sbjct: 487 VTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSH 546

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
           +   G E D  +  ALV MYM+ G++    ++F+++  +D V+WN + S +  +    Q 
Sbjct: 547 VKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQA 606

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           L++F  M     KPN  TF+ IL AC     V  G++L     ++SL+ N      +VD+
Sbjct: 607 LKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDL 666

Query: 298 YDKSGCLEDA 307
             KSG L++A
Sbjct: 667 LGKSGHLQEA 676



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 117/240 (48%), Gaps = 1/240 (0%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           ++A+++F  +   +VV+W+AL++ Y+  G  +  + L+  M     K +  +L +V+   
Sbjct: 472 DVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSC 531

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           AN   ++ G+++H+    +G   D  +  +LVDMY KCG    A K+F  + + DVV W 
Sbjct: 532 ANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWN 591

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            +I+     G   +A K+F++M   +VKPN     +++ A    G    G  +   + +Y
Sbjct: 592 VMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEEY 651

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALFSRFQDYESPDQGLRI 240
             E +      +V +  ++G +     V  A+    D   W  L    + +++ + GLR+
Sbjct: 652 SLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRV 711



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 130/300 (43%), Gaps = 18/300 (6%)

Query: 275 LHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGE 334
           LHA  +   L         LV  Y  +G    A +AF +    D F + +++ S  +A +
Sbjct: 28  LHALAVTSGLSPRPDFAAKLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRASD 87

Query: 335 AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL---DMFV 391
               L   R+MR  G + + FT     +  + +  L  G  +H+ +V+ G L     + V
Sbjct: 88  FASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSVRFGLLEGDGSVAV 147

Query: 392 STALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML---- 447
           +++LV MYA+CGS+ DA  +F     RD  +W  +I G V +G   + L     M+    
Sbjct: 148 ASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAG 207

Query: 448 DEGYVPDEITFVVVLSACSHMGLIEEGK-KHFSSIKKIYGITPTIKHFACMIDILGRAGK 506
           D G  P+  T    L AC  +G +  G   H   +K   G  P++   + +  +  +   
Sbjct: 208 DGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSV--VSSLFSMYTKCDS 265

Query: 507 FTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDI 566
            TE    +       + + W +L+GA    G+       AEK +EL   ME + + P ++
Sbjct: 266 -TEDARILFPELPEKDLVSWTSLIGAYCRAGH-------AEKAVELFLGMEESGLQPDEV 317


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 186/613 (30%), Positives = 316/613 (51%), Gaps = 32/613 (5%)

Query: 20  NALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIR 79
           N+L+ GY+ +G G++ + L+  M  +    + ++   VL G         G  VH   ++
Sbjct: 100 NSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVK 159

Query: 80  LGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKI 139
           +G   D F+   L+  Y++CG  D+  KVF  + + +VV+W ++I    +    +EA  +
Sbjct: 160 MGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSL 219

Query: 140 FNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYME 199
           F  M E+ ++P+   +  ++ A  +  D   GE + A I + G + + ++ NALV MYM+
Sbjct: 220 FFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMK 279

Query: 200 NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVI 259
            G +    R+F+    ++ V +N + S +       + L I  +ML +G +P+  T +  
Sbjct: 280 CGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSA 339

Query: 260 LKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL 319
           + A + L D+ +GK  H + I++ L+G   +G  ++DMY K G  E A   FD ++NK +
Sbjct: 340 ISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTV 399

Query: 320 FAYTAIITSYAQAGEAEMA-------------------------------LKCFRKMRLE 348
            ++ ++   + + G+ E A                               ++ FR+M+ E
Sbjct: 400 VSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGE 459

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
           GIK++  T+    + C  +      + +H+   K G   DM ++TALV M+A+CG    A
Sbjct: 460 GIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSA 519

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
             VF     RD ++W   IG     G GE A   F  ML +G  PD + FV VL+ACSH 
Sbjct: 520 MQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHG 579

Query: 469 GLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWEN 528
           G +E+G  H  S+ + +GI+P I+H+ CM+D+LGRAG   E  + I    + PN +VW +
Sbjct: 580 GQVEQG-LHIFSLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGS 638

Query: 529 LLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGI 588
           LL AC  H N+E+    AE++ EL P+    +V  S+I A+ G+W D + VR  L  +G+
Sbjct: 639 LLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGV 698

Query: 589 KKEPSCSWIEVDG 601
           +K P  S ++V+G
Sbjct: 699 RKVPGSSSVQVNG 711



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 123/477 (25%), Positives = 220/477 (46%), Gaps = 44/477 (9%)

Query: 103 DNALKVFYRIK-----DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTS 157
           D A K F   K     D  +    ++I      G  +EA  ++  M    V PN +    
Sbjct: 77  DYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPF 136

Query: 158 LVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQD 217
           ++   T+      G  +H  + K G E D  + N L+  Y E G + +G +VFE ++ ++
Sbjct: 137 VLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERN 196

Query: 218 SVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHA 277
            VSW +L   +   + P + + +F++M+  G +P+  T + ++ AC+ L D+  G+++ A
Sbjct: 197 VVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCA 256

Query: 278 HTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEM 337
           +  +  L  N V+  +LVDMY K G ++ A   FD   +++L  Y  I+++YA+ G A  
Sbjct: 257 YIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLARE 316

Query: 338 ALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH---------LLD 388
           AL    +M  +G + +  T+ S ++  + +  L  G++ H   ++ G          ++D
Sbjct: 317 ALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIID 376

Query: 389 MFVS----------------------TALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           M++                        +L A + + G ++ A  VF     R+   WN M
Sbjct: 377 MYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTM 436

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           I G V+  L E A+E FR M  EG   D +T + + SAC ++G  E  K   + I+K  G
Sbjct: 437 ISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEK-NG 495

Query: 487 ITPTIKHFACMIDILGRAG---KFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           I   ++    ++D+  R G      ++ N +TE  ++     W   +G  +  GN E
Sbjct: 496 IPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVS----AWTAAIGTMAMEGNGE 548



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 115/416 (27%), Positives = 197/416 (47%), Gaps = 33/416 (7%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+   +VF+ M E NVVSW +L+ GYA     ++ + LF  M +   + S  ++  V+  
Sbjct: 182 MDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISA 241

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    +  G+ V A    LG  L+K +  +LVDMY KCG  D A ++F    D ++V +
Sbjct: 242 CAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLY 301

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             I++   +QG  +EA  I + M +   +P++  + S + A+ +  D   G+  H  + +
Sbjct: 302 NTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIR 361

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNAL---FSRFQDYES---- 233
            G E    +GN ++ MYM+ G+     RVF+ ++++  VSWN+L   F R  D ES    
Sbjct: 362 NGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEV 421

Query: 234 ----PDQ--------------------GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDV 269
               P++                     + +F +M  +G K +  T + I  AC  L   
Sbjct: 422 FNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAP 481

Query: 270 GFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSY 329
              K +H +  K+ +  +  + T+LVDM+ + G  + A   F+ +  +D+ A+TA I + 
Sbjct: 482 ELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTM 541

Query: 330 AQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH 385
           A  G  E A   F +M ++G+K +       L  CS    +  G  LH  ++   H
Sbjct: 542 AMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQG--LHIFSLMEDH 595



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 148/306 (48%), Gaps = 10/306 (3%)

Query: 172 ESIHAVICKYGFESDTLVGNALVSMYMENGR---VSYGSRVFEAIAHQDSVSWNALF--- 225
           + +H  I K G +        LV+   E      + Y  + FE +  +D  S +ALF   
Sbjct: 42  KQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFE-LFKEDVRSDDALFMLN 100

Query: 226 SRFQDYESPDQG---LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKH 282
           S  + Y S   G   + ++ +ML+ G  PN  TF  +L  C+ ++    G Q+H   +K 
Sbjct: 101 SLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKM 160

Query: 283 SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCF 342
            L+ +  +   L+  Y + G ++     F+ ++ +++ ++T++I  YA+    + A+  F
Sbjct: 161 GLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLF 220

Query: 343 RKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC 402
            +M   GI+ +  T+   ++ C+ +  L  G  + +   + G  L+  +  ALV MY KC
Sbjct: 221 FEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKC 280

Query: 403 GSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVL 462
           G+ID A+ +F     R+   +N ++  Y + GL  +AL     ML +G  PD +T +  +
Sbjct: 281 GAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAI 340

Query: 463 SACSHM 468
           SA + +
Sbjct: 341 SASAQL 346



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 112/225 (49%), Gaps = 11/225 (4%)

Query: 260 LKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM---YDKSGCLEDAGVAF----- 311
           L+ C +L+ +   KQLH    K+ LD      T LV+          L+ A  AF     
Sbjct: 32  LRCCKTLNQL---KQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKE 88

Query: 312 DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLA 371
           D  ++  LF   ++I  Y+ AG    A+  + +M + G+  N +T    L+GC+ +A   
Sbjct: 89  DVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFC 148

Query: 372 NGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV 431
            G  +H   VK G   D+F+   L+  YA+CG +D    VF+G + R+  SW  +I GY 
Sbjct: 149 EGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYA 208

Query: 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
           +    ++A+  F  M++ G  P  +T V V+SAC+ +  ++ G++
Sbjct: 209 RGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGER 253


>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
          Length = 549

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 176/515 (34%), Positives = 278/515 (53%), Gaps = 16/515 (3%)

Query: 95  MYSKCGLADNALKVFYRIKDP----DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKP 150
           MYSKC   + AL +F    DP    +V A+ AII+     G  +E  + +  MR   V P
Sbjct: 1   MYSKCNQMNFALSIF---SDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMP 57

Query: 151 NQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF 210
           ++F     ++A  +  + +    IH ++ K+G E D  +G+ALV+ Y++ G + +    F
Sbjct: 58  DKFTFPCAIKACLDVLEIK---KIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAF 114

Query: 211 EAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVG 270
           E +  +D V WNA+ + +      +  L  F +M  +   P+  T   IL   + + D+ 
Sbjct: 115 EELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLN 174

Query: 271 FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
            G+ +H   +K   D    V  SL+DMY K  C+EDA   F+ +  KD+F++ +I + + 
Sbjct: 175 NGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHE 234

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG------ 384
           Q G+ +  L+   +M   GI+ +  T+ + L  CS +A L +GR +H   + +G      
Sbjct: 235 QCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGK 294

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
            + D+ +  A++ MYAKCGS+ DA  VF+    +D ASWN+MI GY  HG G +ALE F 
Sbjct: 295 DIDDVLLKNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFS 354

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA 504
            M +    PDE+TFV VLSACSH G + +G+   + +K  Y + PTI+H+ C+ID+LGRA
Sbjct: 355 RMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRA 414

Query: 505 GKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564
           G+  E         +  N +VW  LL AC  H +  L E  A+++ ELEP+   +YV  S
Sbjct: 415 GQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMS 474

Query: 565 DISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           ++    GR+ +   VR  +  Q ++K P CSWIE+
Sbjct: 475 NVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIEL 509



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 198/403 (49%), Gaps = 10/403 (2%)

Query: 13  ELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQV 72
           E+NV ++NA+++G+  +G  ++    +  M++      KF+    +K   +   IK    
Sbjct: 21  EINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDVLEIKK--- 77

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           +H +  + G  LD F+  +LV+ Y K GL ++A   F  +   DVV W A++    Q G 
Sbjct: 78  IHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQ 137

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
            +   + F  M + SV P++F +T ++      GD   G  IH    K G++S   V N+
Sbjct: 138 FEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNS 197

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           L+ MY +   +     +FE +  +D  SWN++ S  +     D  LR+  +ML  G +P+
Sbjct: 198 LIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGDHDGTLRLLDRMLGAGIQPD 257

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSL--DGNHV----VGTSLVDMYDKSGCLED 306
           + T   +L ACS L+ +  G+++H + I   L  DG  +    +  +++DMY K G + D
Sbjct: 258 LVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRD 317

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A + F+ + NKD+ ++  +I  Y   G    AL+ F +M    +K +E T    L+ CS 
Sbjct: 318 AHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSH 377

Query: 367 VATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
              ++ GR  L  +  K      +   T ++ M  + G +D+A
Sbjct: 378 AGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEA 420



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 164/322 (50%), Gaps = 23/322 (7%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A+  F+ +P  +VV WNA++NGYA+ G  + V+  F  M D     S+F+++ +L  
Sbjct: 107 MEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSV 166

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           FA  G +  G+++H  A+++G      +S SL+DMY KC   ++AL++F  +++ D+ +W
Sbjct: 167 FAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSW 226

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +I +  +Q G      ++ + M  + ++P+   +T+++ A +       G  IH  +  
Sbjct: 227 NSIXSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIV 286

Query: 181 YGFE------SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
            G         D L+ NA++ MY + G +     VFE + ++D  SWN +   +  +   
Sbjct: 287 SGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYG 346

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAH---------TIKHSLD 285
           ++ L +F +M     KP+  TF+ +L ACS    V  G+   A          TI+H   
Sbjct: 347 NEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHY-- 404

Query: 286 GNHVVGTSLVDMYDKSGCLEDA 307
                 T ++DM  ++G L++A
Sbjct: 405 ------TCVIDMLGRAGQLDEA 420


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 183/543 (33%), Positives = 294/543 (54%), Gaps = 4/543 (0%)

Query: 62  ANSGYIKAGQVVHAMAIRLGC-ALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           A  G   A Q+ HA A+RLG    + F S SLV  Y + G    A +VF  + + DV AW
Sbjct: 78  AAPGPASAAQL-HACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAW 136

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+++ L +     +A  +   M    V  +   L+S++      GD+     +H    K
Sbjct: 137 NAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVK 196

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +G   +  V NAL+ +Y + G ++    VF  +A +D V+WN++ S  +        + +
Sbjct: 197 HGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVEL 256

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLD-GNHVVGTSLVDMYD 299
           F+ M+  G  P++ T + +  A +   D    K +H +  +   D G+ + G ++VDMY 
Sbjct: 257 FHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYA 316

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR-LEGIKSNEFTLA 358
           K   ++ A   FD+L ++D+ ++  +IT Y Q G A  A++ +  M   EG+K  + T  
Sbjct: 317 KMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFV 376

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L   S +  L  G  +H++++KTG  LD++V+T L+ +YAKCG + +A  +F+    R
Sbjct: 377 SVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRR 436

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
            T  WN +I G   HG G KAL  F  M  E   PD +TFV +L+ACSH GL+++G+  F
Sbjct: 437 STGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFF 496

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
             ++ +YGI P  KH+ CM+D+LGRAG+  E   FI    + P++ VW  LLGAC  HGN
Sbjct: 497 DLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGN 556

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           +E+ +  ++ L EL+P+    YV  S++ A  G+W+    VR+L+  Q ++K P  S +E
Sbjct: 557 VEMGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSME 616

Query: 599 VDG 601
           V G
Sbjct: 617 VKG 619



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 134/464 (28%), Positives = 226/464 (48%), Gaps = 6/464 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A RVF  MPE +V +WNA+L+G   +      + L   M          +LS+VL     
Sbjct: 121 AYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVV 180

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G      V+H  A++ G + + F+  +L+D+Y K G+   A  VF  +   D+V W +I
Sbjct: 181 LGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSI 240

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+  +Q G    A ++F+ M ES V P+   L SL  A  + GD+   +S+H  + + G+
Sbjct: 241 ISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGW 300

Query: 184 E-SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           +  D + GNA+V MY +  ++    +VF+ +  +D VSWN L + +      ++ +RI+ 
Sbjct: 301 DVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYN 360

Query: 243 QML-LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            M   +G KP   TF+ +L A S L  +  G ++HA +IK  L+ +  V T L+D+Y K 
Sbjct: 361 DMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKC 420

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G L +A   F+ +  +    + AII      G    AL  F +M+ E IK +  T  S L
Sbjct: 421 GKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLL 480

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVS-TALVAMYAKCGSIDDAEAVFKGSALR-D 419
             CS    +  GR    +      ++ +    T +V M  + G +D+A    +   ++ D
Sbjct: 481 AACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPD 540

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           +A W  ++G    HG  E    A + + +    P+ + + V++S
Sbjct: 541 SAVWGALLGACRIHGNVEMGKVASQNLFELD--PENVGYYVLMS 582



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 114/228 (50%), Gaps = 3/228 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLK 59
           ++ A++VF ++P+ +VVSWN L+ GY ++G   + + ++  M + E  K  + +  +VL 
Sbjct: 321 IDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLP 380

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
            ++  G ++ G  +HA++I+ G  LD +++  L+D+Y+KCG    A+ +F  +       
Sbjct: 381 AYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGP 440

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI- 178
           W AII  L   G   +A  +F+ M++  +KP+     SL+ A +  G    G S   ++ 
Sbjct: 441 WNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQ 500

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALF 225
             YG          +V M    G++       +++    DS  W AL 
Sbjct: 501 TVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALL 548


>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 183/542 (33%), Positives = 289/542 (53%), Gaps = 19/542 (3%)

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127
           K+ Q +H   I        FL    +D+       +NA  +F +I  P+  A+  +I  L
Sbjct: 45  KSLQQIHTQMIINAIHKPNFLLHRFIDLKD----FNNASLLFSQIPYPNEYAFNIMIRGL 100

Query: 128 DQQGCCQEAAKIFNL-------MRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
                     + FNL       M++  ++PN F    +  A         G+  H+ + K
Sbjct: 101 ------TTTWQKFNLTIEFYYQMKDFGIRPNNFTYPFVFIACANLLVLNHGQCAHSGVLK 154

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G  +D  V ++L++MY   G +    RVF+ I+ +D VSWN++ S +         + +
Sbjct: 155 SGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGL 214

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M   GF+P+  T + IL AC  L D+G G  +    +++ +D N  VG++L+ MY K
Sbjct: 215 FGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGK 274

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L  A   FD +  KD+  + A+IT YAQ G ++ A+  F  MR  G+  ++ TL   
Sbjct: 275 CGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVGV 334

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L+ C+ +  L  G+ L + A + G   D++VSTAL+ MYAKCGS+DDA  VF+    ++ 
Sbjct: 335 LSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQKNE 394

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEG--YVPDEITFVVVLSACSHMGLIEEGKKHF 478
            SWN MI     HG  +++L  F+ M  EG    P++I+F+ VLSAC H GL++EG++ F
Sbjct: 395 VSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAGLVDEGRQLF 454

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
             +   +G+ P I+H +CM+D+L RAG   E  +FI +    P+ +V   LLGAC    N
Sbjct: 455 DLMSSSFGLVPKIEHHSCMVDLLARAGHVHEAWDFIEKMPEKPDEVVLGALLGACQKRRN 514

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           +++ E+    LLE+EP    NY+  S I A   RW+D + +R L+  +G+ K P CSWIE
Sbjct: 515 VDVSERVMHMLLEMEPLNSGNYIISSKIFANMKRWDDSARMRVLMRQRGVTKTPGCSWIE 574

Query: 599 VD 600
           ++
Sbjct: 575 IE 576



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/409 (26%), Positives = 206/409 (50%), Gaps = 4/409 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDG-QKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           A  +F  +P  N  ++N ++ G   +       +  +  MKD   + + F+   V    A
Sbjct: 78  ASLLFSQIPYPNEYAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGIRPNNFTYPFVFIACA 137

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           N   +  GQ  H+  ++ G   D  +  SL+ MYS+CG    A +VF  I + D+V+W +
Sbjct: 138 NLLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVSWNS 197

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I+   + G   +A  +F  MR++  +P++  L S++ A  + GD   G  I   + +  
Sbjct: 198 MISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENE 257

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            + ++ VG+AL+ MY + G +S   RVF+ +  +D V+WNA+ + +      D+ + +F 
Sbjct: 258 MDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFS 317

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            M   G  P+  T + +L AC+S+  + FGK L  +  +  L  +  V T+L+DMY K G
Sbjct: 318 GMRESGVNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCG 377

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG--IKSNEFTLASC 360
            L+DA   F+ +  K+  ++ A+I++ A  G  + +L  F++M  EG  ++ N+ +    
Sbjct: 378 SLDDALRVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGV 437

Query: 361 LNGCSPVATLANGRLLHSIAVKT-GHLLDMFVSTALVAMYAKCGSIDDA 408
           L+ C     +  GR L  +   + G +  +   + +V + A+ G + +A
Sbjct: 438 LSACVHAGLVDEGRQLFDLMSSSFGLVPKIEHHSCMVDLLARAGHVHEA 486


>gi|38567725|emb|CAE76014.1| B1358B12.23 [Oryza sativa Japonica Group]
          Length = 918

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 182/605 (30%), Positives = 330/605 (54%), Gaps = 8/605 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNG---YAESGDG-QKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           A R+F  MPE +VV+W A+++G     + G+G   ++ +  S  D   + +  ++ + L+
Sbjct: 164 AVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLE 223

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
                G +  G  +H   ++ G      +  SL  MY+KC   ++A  +F  + + D+V+
Sbjct: 224 ACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVS 283

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W ++I    + G  ++A ++F  M ES ++P++ V++ L+         R G++ HA I 
Sbjct: 284 WTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIV 343

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           +  F    L+GNAL+SMY +  +V   + VF  +  +D+ SW+++   +       + L 
Sbjct: 344 RRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLE 403

Query: 240 IFYQMLLKG---FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
           ++ +M  +    F+ +  + I I+ +CS L  +  G+  H ++IKH    N  V  +L+ 
Sbjct: 404 LYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALIS 463

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           MY + G  + A   F  +  KD+  ++A+I+SY+  G ++ AL  + +M  EG+K N  T
Sbjct: 464 MYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSAT 523

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
           L S ++ C+ +A L +G L+HS     G   D+ + TALV MY KCG +  A  +F    
Sbjct: 524 LVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSML 583

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            RD  +WN+MI GY  HG   +AL+ F MM      P+ +TF+ +LSAC H GL+++G++
Sbjct: 584 ERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRE 643

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
            F+ +++ Y + P +KH+ACM+D+LG++G   E E+ ++   + P+  +W  LLGAC  H
Sbjct: 644 LFTRMEE-YSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMH 702

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSW 596
            N E+  + A+K    +P+ +  Y+  S+   +  +WN+   +R ++ + G++K    S 
Sbjct: 703 DNFEMGLRVAKKAFASDPENDGYYILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWST 762

Query: 597 IEVDG 601
           I++ G
Sbjct: 763 IDICG 767



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/436 (26%), Positives = 206/436 (47%), Gaps = 4/436 (0%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E A+ +F  +PE ++VSW +L+  Y  +G  +K + LF  M++   +  +  +S +L G 
Sbjct: 267 EDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGL 326

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
            N   ++ G+  HA  +R        +  +L+ MY+KC   D A  VF  +   D  +W 
Sbjct: 327 GNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWS 386

Query: 122 AIITCLDQQGC---CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +++    + G    C E  +      +   + +   L S++ + +  G  R G+S H   
Sbjct: 387 SMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYS 446

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K+    ++ V NAL+SMY   G      ++F  +  +D V+W+AL S +         L
Sbjct: 447 IKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDAL 506

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            ++ QML +G KPN  T + ++ +C++L+ +  G+ +H+H     L+ +  + T+LVDMY
Sbjct: 507 LLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMY 566

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G L  A   FDS+  +D+  +  +I+ Y   GEA  ALK F  M    +K N  T  
Sbjct: 567 MKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFL 626

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           + L+ C     +  GR L +   +     ++     +V +  K G + +AE V     + 
Sbjct: 627 AILSACCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIE 686

Query: 419 -DTASWNMMIGGYVKH 433
            D   W  ++G    H
Sbjct: 687 PDGGIWGTLLGACKMH 702



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 135/559 (24%), Positives = 258/559 (46%), Gaps = 19/559 (3%)

Query: 19  WNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAI 78
           WN+LL     + D    +     M+    + S+F+   V    A  G +  G  VHA ++
Sbjct: 75  WNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSV 134

Query: 79  RLGCALDK---FLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT-CLDQQGCCQ 134
           R G         ++ SLV MY++CG   +A+++F  + + DVVAW A+I+ C+    C +
Sbjct: 135 RFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGE 194

Query: 135 EAAKIFNLMR---ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGN 191
             + +  ++R   +   +PN   + S + A    G+   G  +H    K G      V +
Sbjct: 195 GLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVS 254

Query: 192 ALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKP 251
           +L SMY +         +F  +  +D VSW +L   +      ++ + +F  M   G +P
Sbjct: 255 SLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQP 314

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF 311
           +      +L    + + V  GK  HA  ++ +   + ++G +L+ MY K   ++ A   F
Sbjct: 315 DEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVF 374

Query: 312 DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLA 371
             L  +D  ++++++ +Y +AG     L+ +R+M+       E+   S ++  S  + L 
Sbjct: 375 RMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLG 434

Query: 372 NGRL---LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
             RL    H  ++K     +  V+ AL++MY +CG+ D A  +F     +D  +W+ +I 
Sbjct: 435 RLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALIS 494

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGIT 488
            Y   G  + AL  +  ML EG  P+  T V V+S+C+++  +E G+   S +K + G+ 
Sbjct: 495 SYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDV-GLE 553

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEK 548
             +     ++D+  + G+   I   + ++ L  + + W  ++     HG       +A +
Sbjct: 554 CDLSICTALVDMYMKCGQLG-IARKMFDSMLERDVVTWNVMISGYGMHG-------EAIQ 605

Query: 549 LLELEPKMESNYVFPSDIS 567
            L+L   ME   V P+ ++
Sbjct: 606 ALKLFSMMERGNVKPNSLT 624



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 144/504 (28%), Positives = 231/504 (45%), Gaps = 21/504 (4%)

Query: 72  VVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQG 131
            +HA+A+  G +     +  LV  YS  GL   A   F     PD   W +++    +  
Sbjct: 27  TLHALAVTSGLSPRPDFAAKLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRAS 86

Query: 132 CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF---ESDTL 188
                      MR S  +P++F    +  A  E G    G ++HA   ++G    +    
Sbjct: 87  DFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSVRFGLLEGDGSVA 146

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK- 247
           V ++LV MY   G V    R+F+ +  +D V+W A+ S         +GL    +M+   
Sbjct: 147 VASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSA 206

Query: 248 ---GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
              G +PN  T    L+AC  L ++  G  LH   +K  +     V +SL  MY K    
Sbjct: 207 GDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDST 266

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
           EDA + F  L  KDL ++T++I +Y +AG AE A++ F  M   G++ +E  ++  L G 
Sbjct: 267 EDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGL 326

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
              A +  G+  H+  V+      + +  AL++MYAKC  +D A  VF+    RDT SW+
Sbjct: 327 GNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWS 386

Query: 425 MMIGGYVKHGLGEKALEAFRMML---DEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSS 480
            M+  Y K GL  K LE +R M     + +  D  + + ++S+CS +G +  G+  H  S
Sbjct: 387 SMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYS 446

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           IK + G   ++ +   +I + GR G F          K T + + W  L+ + S  G+  
Sbjct: 447 IKHLAGENSSVAN--ALISMYGRCGNFDVARKIFGMVK-TKDVVTWSALISSYSHLGH-- 501

Query: 541 LDEKDAEKLLELEPKMESNYVFPS 564
              KDA   L L  +M +  V P+
Sbjct: 502 --SKDA---LLLYDQMLTEGVKPN 520



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 162/310 (52%), Gaps = 3/310 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK---KFSKFSLSTV 57
           +++A  VF+ + + +  SW++++  Y ++G   K + L+  M+  +K   ++   SL ++
Sbjct: 367 VDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISI 426

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
           +   +  G ++ GQ  H  +I+     +  ++ +L+ MY +CG  D A K+F  +K  DV
Sbjct: 427 ISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDV 486

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           V W A+I+     G  ++A  +++ M    VKPN   L S++ +         GE IH+ 
Sbjct: 487 VTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSH 546

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
           +   G E D  +  ALV MYM+ G++    ++F+++  +D V+WN + S +  +    Q 
Sbjct: 547 VKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQA 606

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           L++F  M     KPN  TF+ IL AC     V  G++L     ++SL+ N      +VD+
Sbjct: 607 LKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDL 666

Query: 298 YDKSGCLEDA 307
             KSG L++A
Sbjct: 667 LGKSGHLQEA 676



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 117/240 (48%), Gaps = 1/240 (0%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           ++A+++F  +   +VV+W+AL++ Y+  G  +  + L+  M     K +  +L +V+   
Sbjct: 472 DVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSC 531

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           AN   ++ G+++H+    +G   D  +  +LVDMY KCG    A K+F  + + DVV W 
Sbjct: 532 ANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWN 591

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            +I+     G   +A K+F++M   +VKPN     +++ A    G    G  +   + +Y
Sbjct: 592 VMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEEY 651

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALFSRFQDYESPDQGLRI 240
             E +      +V +  ++G +     V  A+    D   W  L    + +++ + GLR+
Sbjct: 652 SLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRV 711



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 130/300 (43%), Gaps = 18/300 (6%)

Query: 275 LHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGE 334
           LHA  +   L         LV  Y  +G    A +AF +    D F + +++ S  +A +
Sbjct: 28  LHALAVTSGLSPRPDFAAKLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRASD 87

Query: 335 AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL---DMFV 391
               L   R+MR  G + + FT     +  + +  L  G  +H+ +V+ G L     + V
Sbjct: 88  FASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSVRFGLLEGDGSVAV 147

Query: 392 STALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML---- 447
           +++LV MYA+CGS+ DA  +F     RD  +W  +I G V +G   + L     M+    
Sbjct: 148 ASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAG 207

Query: 448 DEGYVPDEITFVVVLSACSHMGLIEEGK-KHFSSIKKIYGITPTIKHFACMIDILGRAGK 506
           D G  P+  T    L AC  +G +  G   H   +K   G  P++   + +  +  +   
Sbjct: 208 DGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSV--VSSLFSMYTKCDS 265

Query: 507 FTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDI 566
            TE    +       + + W +L+GA    G+       AEK +EL   ME + + P ++
Sbjct: 266 -TEDARILFPELPEKDLVSWTSLIGAYCRAGH-------AEKAVELFLGMEESGLQPDEV 317


>gi|222629009|gb|EEE61141.1| hypothetical protein OsJ_15084 [Oryza sativa Japonica Group]
          Length = 897

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 182/604 (30%), Positives = 329/604 (54%), Gaps = 10/604 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNG---YAESGDG-QKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           A R+F  MPE +VV+W A+++G     + G+G   ++ +  S  D   + +  ++ + L+
Sbjct: 164 AVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLE 223

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
                G +  G  +H   ++ G      +  SL  MY+KC   ++A  +F  + + D+V+
Sbjct: 224 ACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVS 283

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W ++I    + G  ++A ++F  M ES ++P++ V++ L+         R G++ HA I 
Sbjct: 284 WTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIV 343

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           +  F    L+GNAL+SMY +  +V   + VF  +  +D+ SW+++   +       + L 
Sbjct: 344 RRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLE 403

Query: 240 IFYQMLLKG---FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
           ++ +M  +    F+ +  + I I+ +CS L  +  G+  H ++IKH    N  V  +L+ 
Sbjct: 404 LYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALIS 463

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           MY + G  + A   F  +  KD+  ++A+I+SY+  G ++ AL  + +M  EG+K N  T
Sbjct: 464 MYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSAT 523

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
           L S ++ C+ +A L +G L+HS     G   D+ + TALV MY KCG +  A  +F    
Sbjct: 524 LVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSML 583

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            RD  +WN+MI GY  HG   +AL+ F MM      P+ +TF+ +LSAC H GL+++G++
Sbjct: 584 ERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRE 643

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
            F+ +++ Y + P +KH+ACM+D+LG++G   E E+ ++   + P+  +W  LLGAC  H
Sbjct: 644 LFTRMEE-YSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMH 702

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSW 596
            N E+  + A+K    +P+ +  Y+  S+   +  +WN+   +R ++ + G++K  S  W
Sbjct: 703 DNFEMGLRVAKKAFASDPENDGYYILMSNSYGSAEKWNEIEKLRDMMKNHGVEK--SIGW 760

Query: 597 IEVD 600
             +D
Sbjct: 761 STID 764



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/436 (26%), Positives = 206/436 (47%), Gaps = 4/436 (0%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E A+ +F  +PE ++VSW +L+  Y  +G  +K + LF  M++   +  +  +S +L G 
Sbjct: 267 EDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGL 326

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
            N   ++ G+  HA  +R        +  +L+ MY+KC   D A  VF  +   D  +W 
Sbjct: 327 GNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWS 386

Query: 122 AIITCLDQQGC---CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +++    + G    C E  +      +   + +   L S++ + +  G  R G+S H   
Sbjct: 387 SMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYS 446

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K+    ++ V NAL+SMY   G      ++F  +  +D V+W+AL S +         L
Sbjct: 447 IKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDAL 506

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            ++ QML +G KPN  T + ++ +C++L+ +  G+ +H+H     L+ +  + T+LVDMY
Sbjct: 507 LLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMY 566

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G L  A   FDS+  +D+  +  +I+ Y   GEA  ALK F  M    +K N  T  
Sbjct: 567 MKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFL 626

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           + L+ C     +  GR L +   +     ++     +V +  K G + +AE V     + 
Sbjct: 627 AILSACCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIE 686

Query: 419 -DTASWNMMIGGYVKH 433
            D   W  ++G    H
Sbjct: 687 PDGGIWGTLLGACKMH 702



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 135/559 (24%), Positives = 258/559 (46%), Gaps = 19/559 (3%)

Query: 19  WNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAI 78
           WN+LL     + D    +     M+    + S+F+   V    A  G +  G  VHA ++
Sbjct: 75  WNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSV 134

Query: 79  RLGCALDK---FLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT-CLDQQGCCQ 134
           R G         ++ SLV MY++CG   +A+++F  + + DVVAW A+I+ C+    C +
Sbjct: 135 RFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGE 194

Query: 135 EAAKIFNLMR---ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGN 191
             + +  ++R   +   +PN   + S + A    G+   G  +H    K G      V +
Sbjct: 195 GLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVS 254

Query: 192 ALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKP 251
           +L SMY +         +F  +  +D VSW +L   +      ++ + +F  M   G +P
Sbjct: 255 SLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQP 314

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF 311
           +      +L    + + V  GK  HA  ++ +   + ++G +L+ MY K   ++ A   F
Sbjct: 315 DEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVF 374

Query: 312 DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLA 371
             L  +D  ++++++ +Y +AG     L+ +R+M+       E+   S ++  S  + L 
Sbjct: 375 RMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLG 434

Query: 372 NGRL---LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
             RL    H  ++K     +  V+ AL++MY +CG+ D A  +F     +D  +W+ +I 
Sbjct: 435 RLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALIS 494

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGIT 488
            Y   G  + AL  +  ML EG  P+  T V V+S+C+++  +E G+   S +K + G+ 
Sbjct: 495 SYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDV-GLE 553

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEK 548
             +     ++D+  + G+   I   + ++ L  + + W  ++     HG       +A +
Sbjct: 554 CDLSICTALVDMYMKCGQLG-IARKMFDSMLERDVVTWNVMISGYGMHG-------EAIQ 605

Query: 549 LLELEPKMESNYVFPSDIS 567
            L+L   ME   V P+ ++
Sbjct: 606 ALKLFSMMERGNVKPNSLT 624



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 136/478 (28%), Positives = 220/478 (46%), Gaps = 14/478 (2%)

Query: 72  VVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQG 131
            +HA+A+  G +     +  LV  YS  GL   A   F     PD   W +++    +  
Sbjct: 27  TLHALAVTSGLSPRPDFAAKLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRAS 86

Query: 132 CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF---ESDTL 188
                      MR S  +P++F    +  A  E G    G ++HA   ++G    +    
Sbjct: 87  DFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSVRFGLLEGDGSVA 146

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK- 247
           V ++LV MY   G V    R+F+ +  +D V+W A+ S         +GL    +M+   
Sbjct: 147 VASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSA 206

Query: 248 ---GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
              G +PN  T    L+AC  L ++  G  LH   +K  +     V +SL  MY K    
Sbjct: 207 GDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDST 266

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
           EDA + F  L  KDL ++T++I +Y +AG AE A++ F  M   G++ +E  ++  L G 
Sbjct: 267 EDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGL 326

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
              A +  G+  H+  V+      + +  AL++MYAKC  +D A  VF+    RDT SW+
Sbjct: 327 GNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWS 386

Query: 425 MMIGGYVKHGLGEKALEAFRMML---DEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSS 480
            M+  Y K GL  K LE +R M     + +  D  + + ++S+CS +G +  G+  H  S
Sbjct: 387 SMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYS 446

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           IK + G   ++ +   +I + GR G F          K T + + W  L+ + S  G+
Sbjct: 447 IKHLAGENSSVAN--ALISMYGRCGNFDVARKIFGMVK-TKDVVTWSALISSYSHLGH 501



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 162/310 (52%), Gaps = 3/310 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK---KFSKFSLSTV 57
           +++A  VF+ + + +  SW++++  Y ++G   K + L+  M+  +K   ++   SL ++
Sbjct: 367 VDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISI 426

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
           +   +  G ++ GQ  H  +I+     +  ++ +L+ MY +CG  D A K+F  +K  DV
Sbjct: 427 ISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDV 486

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           V W A+I+     G  ++A  +++ M    VKPN   L S++ +         GE IH+ 
Sbjct: 487 VTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSH 546

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
           +   G E D  +  ALV MYM+ G++    ++F+++  +D V+WN + S +  +    Q 
Sbjct: 547 VKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQA 606

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           L++F  M     KPN  TF+ IL AC     V  G++L     ++SL+ N      +VD+
Sbjct: 607 LKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDL 666

Query: 298 YDKSGCLEDA 307
             KSG L++A
Sbjct: 667 LGKSGHLQEA 676



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 117/240 (48%), Gaps = 1/240 (0%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           ++A+++F  +   +VV+W+AL++ Y+  G  +  + L+  M     K +  +L +V+   
Sbjct: 472 DVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSC 531

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           AN   ++ G+++H+    +G   D  +  +LVDMY KCG    A K+F  + + DVV W 
Sbjct: 532 ANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWN 591

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            +I+     G   +A K+F++M   +VKPN     +++ A    G    G  +   + +Y
Sbjct: 592 VMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEEY 651

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALFSRFQDYESPDQGLRI 240
             E +      +V +  ++G +     V  A+    D   W  L    + +++ + GLR+
Sbjct: 652 SLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRV 711



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 130/300 (43%), Gaps = 18/300 (6%)

Query: 275 LHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGE 334
           LHA  +   L         LV  Y  +G    A +AF +    D F + +++ S  +A +
Sbjct: 28  LHALAVTSGLSPRPDFAAKLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRASD 87

Query: 335 AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL---DMFV 391
               L   R+MR  G + + FT     +  + +  L  G  +H+ +V+ G L     + V
Sbjct: 88  FASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSVRFGLLEGDGSVAV 147

Query: 392 STALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML---- 447
           +++LV MYA+CGS+ DA  +F     RD  +W  +I G V +G   + L     M+    
Sbjct: 148 ASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAG 207

Query: 448 DEGYVPDEITFVVVLSACSHMGLIEEGK-KHFSSIKKIYGITPTIKHFACMIDILGRAGK 506
           D G  P+  T    L AC  +G +  G   H   +K   G  P++   + +  +  +   
Sbjct: 208 DGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSV--VSSLFSMYTKCDS 265

Query: 507 FTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDI 566
            TE    +       + + W +L+GA    G+       AEK +EL   ME + + P ++
Sbjct: 266 -TEDARILFPELPEKDLVSWTSLIGAYCRAGH-------AEKAVELFLGMEESGLQPDEV 317


>gi|242077758|ref|XP_002448815.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
 gi|241939998|gb|EES13143.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
          Length = 913

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 181/556 (32%), Positives = 295/556 (53%), Gaps = 10/556 (1%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
           ++ +L+  A    ++ G  +H    +LG   D  L  +L+DMY+KCG  D A +VF  ++
Sbjct: 220 IADLLRASAKGSSLRGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCGELDMAGEVFGGMR 279

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESS-VKPNQFVLTSLVRATTETGDQRCGE 172
           D +VV+W A++    Q G      ++   MR +S   PN++ L++ ++A   T D   G 
Sbjct: 280 DRNVVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKACCVTEDMGAGV 339

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFE-AIAHQDSVSWNALFSRFQDY 231
            IH +  + G+E   +V ++LV +Y + GR+    RVF+ A   +   +WNA+ S +   
Sbjct: 340 GIHGLCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLATWNAMISGYAHA 399

Query: 232 ESPDQGLRIFYQMLLKG------FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKH--S 283
                 L +F +M  +        +P+  TF  +LKAC  L     G Q+HA       S
Sbjct: 400 GHGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGLGAPREGAQVHAAMAASGFS 459

Query: 284 LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFR 343
              N ++  +LVDMY K G L  A   F+ L  K+   +T ++  +AQ G+   AL+ FR
Sbjct: 460 TASNAILAGALVDMYVKCGRLPVAMQVFERLERKNAIQWTTVVVGHAQEGQVMEALELFR 519

Query: 344 KMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403
           +    G +++   L+S +   +  A +  GR +H   VK+    D+    ++V MY KCG
Sbjct: 520 RFWRSGARADAHVLSSIVGVLADFALVEQGRQVHCYGVKSPAGTDVSAGNSIVDMYLKCG 579

Query: 404 SIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
             D+AE +F+    R+  SW  MI G  KHGLG +A+  F  M   G  PDE+T++ +LS
Sbjct: 580 LPDEAERMFREIPARNVVSWTTMINGLGKHGLGREAVAMFEEMRAGGVEPDEVTYLALLS 639

Query: 464 ACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNA 523
           ACSH GL++E +++FS I++   + P  +H+ACM+D+LGRAG+  E  + I    + P  
Sbjct: 640 ACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTV 699

Query: 524 LVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALL 583
            VW+ LL AC  H ++ +  +  + LL ++     NYV  S++ A  G W +   VR  +
Sbjct: 700 GVWQTLLSACRVHKDVAVGREAGDVLLAIDGDNPVNYVTLSNVFAEAGAWRECHKVRDAM 759

Query: 584 SSQGIKKEPSCSWIEV 599
             +G+KK+  CSW+E+
Sbjct: 760 RRRGLKKQGGCSWVEI 775



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/395 (28%), Positives = 180/395 (45%), Gaps = 14/395 (3%)

Query: 154 VLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAI 213
           ++  L+RA+ +    R G  +H  + K GF SDT++GN L+ MY + G +     VF  +
Sbjct: 219 MIADLLRASAKGSSLRGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCGELDMAGEVFGGM 278

Query: 214 AHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG-FKPNMCTFIVILKACSSLSDVGFG 272
             ++ VSW AL   F  +      LR+  +M       PN  T    LKAC    D+G G
Sbjct: 279 RDRNVVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKACCVTEDMGAG 338

Query: 273 KQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQ 331
             +H   ++   + ++VV +SLV +Y K G + DA   FD     + L  + A+I+ YA 
Sbjct: 339 VGIHGLCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLATWNAMISGYAH 398

Query: 332 AGEAEMALKCFRKMRL------EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH 385
           AG    AL  FR+MR       +  + +EFT AS L  C  +     G  +H+    +G 
Sbjct: 399 AGHGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGLGAPREGAQVHAAMAASGF 458

Query: 386 LL--DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF 443
               +  ++ ALV MY KCG +  A  VF+    ++   W  ++ G+ + G   +ALE F
Sbjct: 459 STASNAILAGALVDMYVKCGRLPVAMQVFERLERKNAIQWTTVVVGHAQEGQVMEALELF 518

Query: 444 RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILG 502
           R     G   D      ++   +   L+E+G++ H   +K   G   +  +   ++D+  
Sbjct: 519 RRFWRSGARADAHVLSSIVGVLADFALVEQGRQVHCYGVKSPAGTDVSAGN--SIVDMYL 576

Query: 503 RAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           + G   E E    E     N + W  ++     HG
Sbjct: 577 KCGLPDEAERMFREIP-ARNVVSWTTMINGLGKHG 610



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 180/375 (48%), Gaps = 10/375 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDM-EKKFSKFSLSTVLK 59
           +++A  VF  M + NVVSW AL+ G+ + GD    + L   M+   E   ++++LS  LK
Sbjct: 268 LDMAGEVFGGMRDRNVVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLK 327

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
               +  + AG  +H + +R G      ++ SLV +YSK G   +A +VF        + 
Sbjct: 328 ACCVTEDMGAGVGIHGLCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLA 387

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLM------RESSVKPNQFVLTSLVRATTETGDQRCGE 172
            W A+I+     G  ++A  +F  M       E   +P++F   SL++A    G  R G 
Sbjct: 388 TWNAMISGYAHAGHGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGLGAPREGA 447

Query: 173 SIHAVICKYGFE--SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
            +HA +   GF   S+ ++  ALV MY++ GR+    +VFE +  ++++ W  +      
Sbjct: 448 QVHAAMAASGFSTASNAILAGALVDMYVKCGRLPVAMQVFERLERKNAIQWTTVVVGHAQ 507

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
                + L +F +    G + +      I+   +  + V  G+Q+H + +K     +   
Sbjct: 508 EGQVMEALELFRRFWRSGARADAHVLSSIVGVLADFALVEQGRQVHCYGVKSPAGTDVSA 567

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
           G S+VDMY K G  ++A   F  +  +++ ++T +I    + G    A+  F +MR  G+
Sbjct: 568 GNSIVDMYLKCGLPDEAERMFREIPARNVVSWTTMINGLGKHGLGREAVAMFEEMRAGGV 627

Query: 351 KSNEFTLASCLNGCS 365
           + +E T  + L+ CS
Sbjct: 628 EPDEVTYLALLSACS 642


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 188/599 (31%), Positives = 322/599 (53%), Gaps = 5/599 (0%)

Query: 4   AKRVFK--SMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           A+ VF   S+PE  V   NA++ G+  +    +V  LF  M   + + + ++    LK  
Sbjct: 98  ARNVFDQCSLPETAVC--NAMIAGFLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKAC 155

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
            +    + G  +   A+R G  L  ++  S+V+   K G   +A KVF  + + DVV W 
Sbjct: 156 TDLLDDEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWN 215

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           +II    Q+G   E+ ++F  M    ++P+   + +L++A  ++G ++ G   H+ +   
Sbjct: 216 SIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLAL 275

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G  +D  V  +LV MY   G     + VF+++  +  +SWNA+ S +       +   +F
Sbjct: 276 GMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALF 335

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +++  G   +  T + +++ CS  SD+  G+ LH+  I+  L+ + V+ T++VDMY K 
Sbjct: 336 RRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKC 395

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G ++ A + F  +  K++  +TA++   +Q G AE ALK F +M+ E + +N  TL S +
Sbjct: 396 GAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLV 455

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS-ALRDT 420
           + C+ + +L  GR +H+  ++ G+  D  +++AL+ MYAKCG I  AE +F     L+D 
Sbjct: 456 HCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDV 515

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
              N MI GY  HG G  AL  +  M++E   P++ TFV +L+ACSH GL+EEGK  F S
Sbjct: 516 ILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHS 575

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +++ + + P  KH+AC++D+  RAG+  E +  + +    P+  V E LL  C  H N  
Sbjct: 576 MERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQMPFQPSTDVLEALLSGCRTHKNTN 635

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +  + A++L+ L+      YV  S+I A   +W   + +R L+  QG+KK P  S IEV
Sbjct: 636 MGIQIADRLISLDYLNSGIYVMLSNIYAEARKWESVNYIRGLMRMQGMKKIPGYSLIEV 694



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 142/562 (25%), Positives = 258/562 (45%), Gaps = 46/562 (8%)

Query: 54  LSTVLKGFANSG-YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI 112
            S++L  F+N+  ++K+   +HA  I+   + + FL+  L+ +YS  G   +A  VF + 
Sbjct: 49  FSSLLHQFSNTLIHVKS---IHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQC 105

Query: 113 KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172
             P+     A+I    +     E  ++F +M    ++ N +     ++A T+  D   G 
Sbjct: 106 SLPETAVCNAMIAGFLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVGM 165

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
            I     + GF     VG+++V+  ++ G ++   +VF+ +  +D V WN++   +    
Sbjct: 166 EIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKG 225

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
              + +++F +M+  G +P+  T   +LKAC        G   H++ +   +  +  V T
Sbjct: 226 LFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLT 285

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           SLVDMY   G    A + FDS+ ++ L ++ A+I+ Y Q G    +   FR++   G   
Sbjct: 286 SLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGF 345

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
           +  TL S + GCS  + L NGR+LHS  ++      + +STA+V MY+KCG+I  A  VF
Sbjct: 346 DSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVF 405

Query: 413 KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE 472
                ++  +W  M+ G  ++G  E AL+ F  M +E    + +T V ++  C+H+G + 
Sbjct: 406 GRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLT 465

Query: 473 EGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENF------------------ 513
           +G+  H   I+  Y     I   + +ID+  + GK    E                    
Sbjct: 466 KGRTVHAHFIRHGYAFDAVIT--SALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIM 523

Query: 514 -----------------ITETKLTPNALVWENLLGACSWHGNIELDE---KDAEKLLELE 553
                            + E +L PN   + +LL ACS  G +E  +      E+  ++ 
Sbjct: 524 GYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVR 583

Query: 554 PKMESNYVFPSDISATQGRWND 575
           P+   +Y    D+ +  GR  +
Sbjct: 584 PQ-HKHYACLVDLHSRAGRLEE 604


>gi|302782183|ref|XP_002972865.1| hypothetical protein SELMODRAFT_51647 [Selaginella moellendorffii]
 gi|300159466|gb|EFJ26086.1| hypothetical protein SELMODRAFT_51647 [Selaginella moellendorffii]
          Length = 597

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 185/566 (32%), Positives = 296/566 (52%), Gaps = 17/566 (3%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           VF S+   NV SWN ++  +A++G  ++ + LF  M   E       + T L        
Sbjct: 36  VFSSIQARNVFSWNMIIAAFAQNGHPERSVALFWRMIREEPGIIPTRI-TFLHALEKLKN 94

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +  G+ +H +AI +G   D  +  ++V MY K     +A +VF ++K  DVVAW A+IT 
Sbjct: 95  LAEGRKIHELAITVGLESDPAVGTAIVTMYGKSRSLADAKRVFDQLKRRDVVAWTALITA 154

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             Q G C+EA  +++ M    V PNQ+  T ++ A  E G    G +IHA I   G ES 
Sbjct: 155 YTQNGHCEEALDLYSSMDPDGVAPNQYTFTIVIDACAELGRLDVGIAIHARITAAGLESW 214

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             V N+L+++Y    R+    R+F+ +  + SVSWN++ + +     P   + ++ +M  
Sbjct: 215 IEVANSLINLYGNCKRLRDAERIFQRMPRRSSVSWNSMIAAYAHNGHPGDAIDLYKRMRG 274

Query: 247 KG-FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
            G  K +  TF+ +L AC S  D+  G+ +H   I   L  + V+ ++ V MY + G +E
Sbjct: 275 DGSVKLDPVTFVNVLGACYSQEDLAAGRSIHRDAIARGLGSHLVLASAAVSMYGRCGSVE 334

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG-IKSNEFTLASCLNGC 364
           ++   F+ +  KD  A++A+I + AQ GE+  AL  +R+M      + NE T  S L  C
Sbjct: 335 ESMATFERMEIKDGVAWSAVIAALAQNGESSSALHFYRRMIWSSSARPNEATFISVLEAC 394

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR------ 418
           S       G  +H   V +G +    +STA+  MYAKCG +D A  +F  S++R      
Sbjct: 395 S---FADEGIKIHQHIVDSGIVHSTMISTAIFNMYAKCGRLDRAREIF--SSMRASRGSF 449

Query: 419 ---DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
              +  SW  MI    +HG  ++ALE FR M  EG  P EI F+ +L  CSH G +E+G 
Sbjct: 450 QSANDVSWMNMISALARHGSIDEALELFREMRLEGGKPSEIVFISILHGCSHSGTMEQGL 509

Query: 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
            HF ++ + +G+ P ++H+ C+ID+LGR G     ++ + +    P+A  W N LG+C  
Sbjct: 510 GHFLAMIQDHGLAPRVEHYGCLIDLLGRGGHLDLAQDLVDQMPFEPDARAWSNFLGSCRL 569

Query: 536 HGNIELDEKDAEKLLELEPKMESNYV 561
           H + +  E  A ++ ELEP+  + YV
Sbjct: 570 HSDRDRAEAAAIRVFELEPEKAAIYV 595



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 132/490 (26%), Positives = 233/490 (47%), Gaps = 24/490 (4%)

Query: 87  FLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLM--R 144
           ++S  +V MY KCG  D+A  VF  I+  +V +W  II    Q G  + +  +F  M   
Sbjct: 15  YVSNMIVQMYGKCGSVDDAWIVFSSIQARNVFSWNMIIAAFAQNGHPERSVALFWRMIRE 74

Query: 145 ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVS 204
           E  + P +    + + A  +  +   G  IH +    G ESD  VG A+V+MY ++  ++
Sbjct: 75  EPGIIPTRI---TFLHALEKLKNLAEGRKIHELAITVGLESDPAVGTAIVTMYGKSRSLA 131

Query: 205 YGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACS 264
              RVF+ +  +D V+W AL + +      ++ L ++  M   G  PN  TF +++ AC+
Sbjct: 132 DAKRVFDQLKRRDVVAWTALITAYTQNGHCEEALDLYSSMDPDGVAPNQYTFTIVIDACA 191

Query: 265 SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA 324
            L  +  G  +HA      L+    V  SL+++Y     L DA   F  +  +   ++ +
Sbjct: 192 ELGRLDVGIAIHARITAAGLESWIEVANSLINLYGNCKRLRDAERIFQRMPRRSSVSWNS 251

Query: 325 IITSYAQAGEAEMALKCFRKMRLEG-IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKT 383
           +I +YA  G    A+  +++MR +G +K +  T  + L  C     LA GR +H  A+  
Sbjct: 252 MIAAYAHNGHPGDAIDLYKRMRGDGSVKLDPVTFVNVLGACYSQEDLAAGRSIHRDAIAR 311

Query: 384 GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF 443
           G    + +++A V+MY +CGS++++ A F+   ++D  +W+ +I    ++G    AL  +
Sbjct: 312 GLGSHLVLASAAVSMYGRCGSVEESMATFERMEIKDGVAWSAVIAALAQNGESSSALHFY 371

Query: 444 RMML-DEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILG 502
           R M+      P+E TF+ VL ACS     +EG K    I    GI  +      + ++  
Sbjct: 372 RRMIWSSSARPNEATFISVLEACS---FADEGIKIHQHIVD-SGIVHSTMISTAIFNMYA 427

Query: 503 RAGKFTEIENFITETKL------TPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKM 556
           + G+        +  +       + N + W N++ A + HG+I       ++ LEL  +M
Sbjct: 428 KCGRLDRAREIFSSMRASRGSFQSANDVSWMNMISALARHGSI-------DEALELFREM 480

Query: 557 ESNYVFPSDI 566
                 PS+I
Sbjct: 481 RLEGGKPSEI 490



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 109/369 (29%), Positives = 183/369 (49%), Gaps = 12/369 (3%)

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           +H  I + G  S T V N +V MY + G V     VF +I  ++  SWN + + F     
Sbjct: 1   LHCWIRERGHGSSTYVSNMIVQMYGKCGSVDDAWIVFSSIQARNVFSWNMIIAAFAQNGH 60

Query: 234 PDQGLRIFYQMLLK--GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
           P++ + +F++M+ +  G  P   TF   L A   L ++  G+++H   I   L+ +  VG
Sbjct: 61  PERSVALFWRMIREEPGIIPTRITF---LHALEKLKNLAEGRKIHELAITVGLESDPAVG 117

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
           T++V MY KS  L DA   FD L  +D+ A+TA+IT+Y Q G  E AL  +  M  +G+ 
Sbjct: 118 TAIVTMYGKSRSLADAKRVFDQLKRRDVVAWTALITAYTQNGHCEEALDLYSSMDPDGVA 177

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            N++T    ++ C+ +  L  G  +H+     G    + V+ +L+ +Y  C  + DAE +
Sbjct: 178 PNQYTFTIVIDACAELGRLDVGIAIHARITAAGLESWIEVANSLINLYGNCKRLRDAERI 237

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP-DEITFVVVLSACSHMGL 470
           F+    R + SWN MI  Y  +G    A++ ++ M  +G V  D +TFV VL AC     
Sbjct: 238 FQRMPRRSSVSWNSMIAAYAHNGHPGDAIDLYKRMRGDGSVKLDPVTFVNVLGACYSQED 297

Query: 471 IEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTE-IENFITETKLTPNALVWEN 528
           +  G+  H  +I +  G+   +   +  + + GR G   E +  F  E     + + W  
Sbjct: 298 LAAGRSIHRDAIAR--GLGSHLVLASAAVSMYGRCGSVEESMATF--ERMEIKDGVAWSA 353

Query: 529 LLGACSWHG 537
           ++ A + +G
Sbjct: 354 VIAALAQNG 362



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 122/448 (27%), Positives = 215/448 (47%), Gaps = 16/448 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AKRVF  +   +VV+W AL+  Y ++G  ++ + L+ SM       ++++ + V+   A 
Sbjct: 133 AKRVFDQLKRRDVVAWTALITAYTQNGHCEEALDLYSSMDPDGVAPNQYTFTIVIDACAE 192

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G +  G  +HA     G      ++ SL+++Y  C    +A ++F R+     V+W ++
Sbjct: 193 LGRLDVGIAIHARITAAGLESWIEVANSLINLYGNCKRLRDAERIFQRMPRRSSVSWNSM 252

Query: 124 ITCLDQQGCCQEAAKIFNLMR-ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I      G   +A  ++  MR + SVK +     +++ A     D   G SIH      G
Sbjct: 253 IAAYAHNGHPGDAIDLYKRMRGDGSVKLDPVTFVNVLGACYSQEDLAAGRSIHRDAIARG 312

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
             S  ++ +A VSMY   G V      FE +  +D V+W+A+ +           L  + 
Sbjct: 313 LGSHLVLASAAVSMYGRCGSVEESMATFERMEIKDGVAWSAVIAALAQNGESSSALHFYR 372

Query: 243 QMLL-KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
           +M+     +PN  TFI +L+AC S +D G   ++H H +   +  + ++ T++ +MY K 
Sbjct: 373 RMIWSSSARPNEATFISVLEAC-SFADEGI--KIHQHIVDSGIVHSTMISTAIFNMYAKC 429

Query: 302 GCLEDAGVAFDSL-ANKDLF------AYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           G L+ A   F S+ A++  F      ++  +I++ A+ G  + AL+ FR+MRLEG K +E
Sbjct: 430 GRLDRAREIFSSMRASRGSFQSANDVSWMNMISALARHGSIDEALELFREMRLEGGKPSE 489

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST--ALVAMYAKCGSIDDAEAVF 412
               S L+GCS   T+  G L H +A+   H L   V     L+ +  + G +D A+ + 
Sbjct: 490 IVFISILHGCSHSGTMEQG-LGHFLAMIQDHGLAPRVEHYGCLIDLLGRGGHLDLAQDLV 548

Query: 413 KGSALR-DTASWNMMIGGYVKHGLGEKA 439
                  D  +W+  +G    H   ++A
Sbjct: 549 DQMPFEPDARAWSNFLGSCRLHSDRDRA 576



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 83/178 (46%), Gaps = 9/178 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E +   F+ M   + V+W+A++   A++G+    +H +  M  +    ++ + +T +  
Sbjct: 333 VEESMATFERMEIKDGVAWSAVIAALAQNGESSSALHFYRRM--IWSSSARPNEATFISV 390

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK------- 113
                +   G  +H   +  G      +S ++ +MY+KCG  D A ++F  ++       
Sbjct: 391 LEACSFADEGIKIHQHIVDSGIVHSTMISTAIFNMYAKCGRLDRAREIFSSMRASRGSFQ 450

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG 171
             + V+W  +I+ L + G   EA ++F  MR    KP++ V  S++   + +G    G
Sbjct: 451 SANDVSWMNMISALARHGSIDEALELFREMRLEGGKPSEIVFISILHGCSHSGTMEQG 508


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 169/495 (34%), Positives = 273/495 (55%), Gaps = 3/495 (0%)

Query: 109 FYRIKDPDVVAWGAIITCLDQQ-GCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD 167
           F  I DP   ++  +I  L         A + ++ M+   +KPN      L  A +    
Sbjct: 83  FSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLA 142

Query: 168 QRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR 227
              G   H  + + G + D  V ++L++MY   G++    +VF+ I+ +D VSWN++ S 
Sbjct: 143 VENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISG 202

Query: 228 FQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGN 287
           +       + + +F +M+  GF+PN  + + +L AC  L D+  G  +    +++ +  N
Sbjct: 203 YSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLN 262

Query: 288 HVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL 347
           + +G++L+ MY K G L  A   FDS+  KD   + A+IT YAQ G +E A+K F+ MR+
Sbjct: 263 YFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRM 322

Query: 348 EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
                ++ TL   L+ C+ +  L  G+ +   A + G   D++V TALV MYAKCGS+D+
Sbjct: 323 SSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDN 382

Query: 408 AEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG--YVPDEITFVVVLSAC 465
           A  VF G   ++  SWN MI     HG  ++AL  F+ M++EG    P++ITFV VLSAC
Sbjct: 383 AFRVFYGMPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSAC 442

Query: 466 SHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV 525
            H GL++EG++ F  +   +G+ P I+H++CM+D+  RAG   E  +F+      P+ ++
Sbjct: 443 VHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVI 502

Query: 526 WENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSS 585
              LLGAC    NI++ E+  + LLELEP    NYV  S + A   RW+D + +R L+  
Sbjct: 503 LGALLGACQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQ 562

Query: 586 QGIKKEPSCSWIEVD 600
           +G+ K P CSWI+++
Sbjct: 563 KGVSKTPGCSWIDIN 577



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 209/409 (51%), Gaps = 4/409 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKV-MHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           A   F ++ +    S+N ++ G + + +   + +  +  MK +  K +  +   +    +
Sbjct: 79  ASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACS 138

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           N   ++ G++ H   IR G   D  +S SL+ MY++CG   +A KVF  I   D+V+W +
Sbjct: 139 NLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNS 198

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I+   +     EA  +F  M E+  +PN+  L S++ A  E GD + G  +   + +  
Sbjct: 199 MISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENK 258

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
              +  +G+AL+ MY + G +    R+F+++  +D V+WNA+ + +      ++ +++F 
Sbjct: 259 MTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQ 318

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            M +    P+  T I IL AC+S+  +  GKQ+  +  +     +  VGT+LVDMY K G
Sbjct: 319 DMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCG 378

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG--IKSNEFTLASC 360
            L++A   F  +  K+  ++ A+I++ A  G+A+ AL  F+ M  EG  +  N+ T    
Sbjct: 379 SLDNAFRVFYGMPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGV 438

Query: 361 LNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
           L+ C     +  G RL H ++   G +  +   + +V ++++ G +++A
Sbjct: 439 LSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEA 487



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 12/141 (8%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSK--FSLSTVLKGF 61
           A RVF  MP+ N VSWNA+++  A  G  Q+ + LF SM +     S    +   VL   
Sbjct: 383 AFRVFYGMPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSAC 442

Query: 62  ANSGYIKAG-QVVHAMAIRLGCALD-KFLSCSLVDMYSKCGLADNALK-VFYRIKDPDVV 118
            ++G +  G ++ H M+   G     +  SC +VD++S+ G  + A   V    + PD V
Sbjct: 443 VHAGLVDEGRRLFHMMSSSFGLVPKIEHYSC-MVDLFSRAGHLEEAWDFVMTMPEKPDEV 501

Query: 119 AWGAIITCLDQQGCCQEAAKI 139
             GA++      G CQ+   I
Sbjct: 502 ILGALL------GACQKRKNI 516


>gi|225462731|ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|302143682|emb|CBI22543.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 196/645 (30%), Positives = 333/645 (51%), Gaps = 64/645 (9%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +++A+++F  MP+  VVSWN +++ Y++ G   + + L  SM     K S+ + S+VL  
Sbjct: 48  LDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMHRSHMKLSESTFSSVLSV 107

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKC--------------------- 99
            A    ++ G+++H + ++ G    + +  +L+  Y+ C                     
Sbjct: 108 CARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIGEARRVFDVLVRRNEVLW 167

Query: 100 ----------GLADNALKVFYRIKDPDVVAWGAIITCLDQQG-CCQEAAKIFNLM-RESS 147
                      + D+AL VF ++   DVVAW  +I+   + G  C +A +IF LM R   
Sbjct: 168 SLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKALEIFRLMMRSGE 227

Query: 148 VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGS 207
             PN+F    +VRA    G    G ++H ++ K G E D  +G ALV  Y E   +    
Sbjct: 228 TTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDAL 287

Query: 208 RVFEAIAHQDSVSWNALFS------RFQDYESPDQGLR----IFYQMLLKGFKPNMCTFI 257
           RV + + +    + N+L        R +D E    G+     + Y +++KG+        
Sbjct: 288 RVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMTEMNPVSYNLMIKGYAVG----- 342

Query: 258 VILKACSSLSDVG-FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
                   + D     +++   TI  S         +++ +Y ++G ++ A   F+   N
Sbjct: 343 ------GQMDDSKRLFEKMPCRTIFSS--------NTMISVYSRNGEIDKALELFEETKN 388

Query: 317 -KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRL 375
            KD   + ++I+ Y  +G+ E ALK +  M    I+  + T ++  + CS + +L  G+L
Sbjct: 389 EKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTQSTFSALFHACSCLGSLHQGQL 448

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           LH+  +KT    +++V T+L+ MY+KCGSI +A+  F      + A+W  +I G+  HGL
Sbjct: 449 LHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTALINGHAYHGL 508

Query: 436 GEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFA 495
           G +A+  F  M+++G  P+  TFV VLSACS  GL+ EG K F S+++ Y +TPT++H+A
Sbjct: 509 GSEAISLFDRMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSMERCYSVTPTLEHYA 568

Query: 496 CMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPK 555
           C++D+LGR+G   E E FI +  L  + +VW  LL AC +  ++E+ E+ AEK+   +PK
Sbjct: 569 CVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSACWFWMDLEVGERVAEKMFSFDPK 628

Query: 556 MESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
             S+YV  S+I A  GRW +   VR +L    +KK+P CSWIE++
Sbjct: 629 PISSYVILSNIYAGLGRWREKMMVRKILRGFKVKKDPGCSWIELN 673



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 113/481 (23%), Positives = 204/481 (42%), Gaps = 48/481 (9%)

Query: 93  VDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQ 152
           +  Y+K    D A ++F ++    VV+W  +I+   + G   EA  +   M  S +K ++
Sbjct: 39  ISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMHRSHMKLSE 98

Query: 153 FVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEA 212
              +S++         R G+ IH ++ K G ES  LVG+AL+  Y     +    RVF+ 
Sbjct: 99  STFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIGEARRVFDV 158

Query: 213 IAHQDSVSWNALFSRFQDYESPDQGLRIFYQM----------LLKGFK------------ 250
           +  ++ V W+ +   +      D  L +F +M          L+ GF             
Sbjct: 159 LVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKALEI 218

Query: 251 -----------PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
                      PN  TF  +++AC  L  +  G+ +H   +K  L+ +  +G +LV+ Y 
Sbjct: 219 FRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYC 278

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           +   ++DA      + N  L A  ++I      G  E A   F  M     + N  +   
Sbjct: 279 ECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGM----TEMNPVSYNL 334

Query: 360 CLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA-L 417
            + G +    + +  RL   +  +T     +F S  ++++Y++ G ID A  +F+ +   
Sbjct: 335 MIKGYAVGGQMDDSKRLFEKMPCRT-----IFSSNTMISVYSRNGEIDKALELFEETKNE 389

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK-K 476
           +D  +WN MI GY+  G  E+AL+ +  M        + TF  +  ACS +G + +G+  
Sbjct: 390 KDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTQSTFSALFHACSCLGSLHQGQLL 449

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
           H   IK  +     +     +ID+  + G   E +        +PN   W  L+   ++H
Sbjct: 450 HAHLIKTPFESNVYVG--TSLIDMYSKCGSIMEAQTSFVSI-FSPNVAAWTALINGHAYH 506

Query: 537 G 537
           G
Sbjct: 507 G 507



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 108/228 (47%), Gaps = 34/228 (14%)

Query: 282 HSLDGNHVVGTSL-VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALK 340
           H  + + ++ T++ +  Y K   L+ A   FD +  + + ++  +I+SY++ G    AL 
Sbjct: 25  HQSNLSEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALF 84

Query: 341 CFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYA 400
               M    +K +E T +S L+ C+ +  L +G+L+H + +K+G      V +AL+  YA
Sbjct: 85  LVYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYA 144

Query: 401 KCGSIDDAEAVFKGSALRDTASWNMMIGGYV----------------------------- 431
            C  I +A  VF     R+   W++M+ GYV                             
Sbjct: 145 SCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISG 204

Query: 432 --KHGLG-EKALEAFRMMLDEG-YVPDEITFVVVLSACSHMGLIEEGK 475
             K+G G  KALE FR+M+  G   P+E TF  V+ AC  +G++  G+
Sbjct: 205 FSKNGDGCGKALEIFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGR 252


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1134

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 183/525 (34%), Positives = 288/525 (54%), Gaps = 6/525 (1%)

Query: 81  GCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIF 140
           G  L+   S  L+DMY KC     A KVF  + + +VV+W A+++     G    +  +F
Sbjct: 399 GSGLNLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLF 458

Query: 141 NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMEN 200
             M    + PN+F  ++ ++A         G  IH    K GFE    VGN+LV MY + 
Sbjct: 459 TEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKC 518

Query: 201 GRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFK--PNMCTFIV 258
           GR++   +VF  +  +  +SWNA+ + +       + L  F  M     K  P+  T   
Sbjct: 519 GRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTS 578

Query: 259 ILKACSSLSDVGFGKQLHAHTIK---HSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
           +LKACSS   +  GKQ+H   ++   H      + G SLVD+Y K G L  A  AFD + 
Sbjct: 579 LLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITG-SLVDLYVKCGNLFSARKAFDQIK 637

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRL 375
            K + +++++I  YAQ G+   A+  F++++    + + F L+S +   +  A L  G+ 
Sbjct: 638 EKTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQ 697

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           + ++ VK    L+  VS +LV MY KCG +D+AE  F    L+D  SW +MI GY KHGL
Sbjct: 698 MQALVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGL 757

Query: 436 GEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFA 495
           G+KA+  F  ML     PDE+ ++ VLSACSH G+I+EG++ FS + +  GI P ++H+A
Sbjct: 758 GKKAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPRVEHYA 817

Query: 496 CMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPK 555
           C++D+LGRAG+  E ++ +    + PN  +W+ LL  C  HG+IEL ++  + LL ++ K
Sbjct: 818 CVVDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDGK 877

Query: 556 MESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
             +NYV  S++    G WN+    R L S +G++KE   SW+E++
Sbjct: 878 NPANYVMMSNLYGQAGYWNEQGNARELGSIKGLQKEAGMSWVEIE 922



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 137/517 (26%), Positives = 241/517 (46%), Gaps = 45/517 (8%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           +A +VF SMPE NVVSW AL++G+  +GD    + LF  M       ++F+ ST LK   
Sbjct: 422 IAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMGRQGIYPNEFTFSTNLKACG 481

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
               ++ G  +H   +++G  +   +  SLVDMYSKCG  + A KVF  +    +++W A
Sbjct: 482 LLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRWMVGRSLISWNA 541

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVK--PNQFVLTSLVRATTETGDQRCGESIHAVICK 180
           +I      G    A   F +M+E+ +K  P++F LTSL++A + TG    G+ IH  + +
Sbjct: 542 MIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVR 601

Query: 181 YGFE--SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            GF   S   +  +LV +Y++ G +    + F+ I  +  +SW++L   +       + +
Sbjct: 602 SGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKTMISWSSLILGYAQEGDFVEAM 661

Query: 239 RIFYQMLLKGFKPNMCTFIV--ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            +F +  L+     + +F++  I+   +  + +  GKQ+ A  +K        V  SLVD
Sbjct: 662 GLFKR--LQELSSQIDSFVLSSIIGVFADFALLQQGKQMQALVVKLPSGLETSVSNSLVD 719

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           MY K G +++A   F  +  KD+ ++T +IT Y + G  + A+  F KM    I+ +E  
Sbjct: 720 MYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGKKAVSIFNKMLRHNIEPDEVC 779

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA-LVAMYAKCGSIDDAEAVFKGS 415
             + L+ CS    +  G  L S  ++T  +       A +V +  + G + +A+ +    
Sbjct: 780 YLAVLSACSHSGMIKEGEELFSKLLETQGIKPRVEHYACVVDLLGRAGRLKEAKHLVDTM 839

Query: 416 ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
            ++                                  P+   +  +LS C   G IE GK
Sbjct: 840 PIK----------------------------------PNVGIWQTLLSLCRVHGDIELGK 865

Query: 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIEN 512
           +    + +I G  P   ++  M ++ G+AG + E  N
Sbjct: 866 EVGKILLRIDGKNPA--NYVMMSNLYGQAGYWNEQGN 900



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 1/129 (0%)

Query: 383 TGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEA 442
           +G  L++  S  L+ MY KC     A  VF     R+  SW  ++ G+V +G    +L  
Sbjct: 398 SGSGLNLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSL 457

Query: 443 FRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILG 502
           F  M  +G  P+E TF   L AC  +  +E+G +      KI G    ++    ++D+  
Sbjct: 458 FTEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKI-GFEMMVEVGNSLVDMYS 516

Query: 503 RAGKFTEIE 511
           + G+  E E
Sbjct: 517 KCGRINEAE 525


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 169/495 (34%), Positives = 273/495 (55%), Gaps = 3/495 (0%)

Query: 109 FYRIKDPDVVAWGAIITCLDQQ-GCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD 167
           F  I DP   ++  +I  L         A + ++ M+   +KPN      L  A +    
Sbjct: 83  FSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLA 142

Query: 168 QRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR 227
              G   H  + + G + D  V ++L++MY   G++    +VF+ I+ +D VSWN++ S 
Sbjct: 143 VENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISG 202

Query: 228 FQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGN 287
           +       + + +F +M+  GF+PN  + + +L AC  L D+  G  +    +++ +  N
Sbjct: 203 YSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLN 262

Query: 288 HVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL 347
           + +G++L+ MY K G L  A   FDS+  KD   + A+IT YAQ G +E A+K F+ MR+
Sbjct: 263 YFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRM 322

Query: 348 EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
                ++ TL   L+ C+ +  L  G+ +   A + G   D++V TALV MYAKCGS+D+
Sbjct: 323 SSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDN 382

Query: 408 AEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG--YVPDEITFVVVLSAC 465
           A  VF G   ++  SWN MI     HG  ++AL  F+ M++EG    P++ITFV VLSAC
Sbjct: 383 AFRVFYGMPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSAC 442

Query: 466 SHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV 525
            H GL++EG++ F  +   +G+ P I+H++CM+D+  RAG   E  +F+      P+ ++
Sbjct: 443 VHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVI 502

Query: 526 WENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSS 585
              LLGAC    NI++ E+  + LLELEP    NYV  S + A   RW+D + +R L+  
Sbjct: 503 LGALLGACQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQ 562

Query: 586 QGIKKEPSCSWIEVD 600
           +G+ K P CSWI+++
Sbjct: 563 KGVSKTPGCSWIDIN 577



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 109/409 (26%), Positives = 210/409 (51%), Gaps = 4/409 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKV-MHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           A   F ++ +    S+N ++ G + + +   + +  +  MK +  K +  +   +    +
Sbjct: 79  ASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACS 138

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           N   ++ G++ H   IR G   D  +S SL+ MY++CG   +A KVF  I   D+V+W +
Sbjct: 139 NLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNS 198

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I+   +     EA  +F  M E+  +PN+  L S++ A  E GD + G  +   + +  
Sbjct: 199 MISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENK 258

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
              +  +G+AL+ MY + G +    R+F+++  +D V+WNA+ + +      ++ +++F 
Sbjct: 259 MTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQ 318

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            M +    P+  T I IL AC+S+  +  GKQ+  +  +     +  VGT+LVDMY K G
Sbjct: 319 DMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCG 378

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG--IKSNEFTLASC 360
            L++A   F  + NK+  ++ A+I++ A  G+A+ AL  F+ M  EG  +  N+ T    
Sbjct: 379 SLDNAFRVFYGMPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGV 438

Query: 361 LNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
           L+ C     +  G RL H ++   G +  +   + +V ++++ G +++A
Sbjct: 439 LSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEA 487



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 12/141 (8%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSK--FSLSTVLKGF 61
           A RVF  MP  N VSWNA+++  A  G  Q+ + LF SM +     S    +   VL   
Sbjct: 383 AFRVFYGMPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSAC 442

Query: 62  ANSGYIKAG-QVVHAMAIRLGCALD-KFLSCSLVDMYSKCGLADNALK-VFYRIKDPDVV 118
            ++G +  G ++ H M+   G     +  SC +VD++S+ G  + A   V    + PD V
Sbjct: 443 VHAGLVDEGRRLFHMMSSSFGLVPKIEHYSC-MVDLFSRAGHLEEAWDFVMTMPEKPDEV 501

Query: 119 AWGAIITCLDQQGCCQEAAKI 139
             GA++      G CQ+   I
Sbjct: 502 ILGALL------GACQKRKNI 516


>gi|297804224|ref|XP_002869996.1| putative protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315832|gb|EFH46255.1| putative protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1251

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 194/605 (32%), Positives = 312/605 (51%), Gaps = 4/605 (0%)

Query: 1    MELAKRVFKSMPELNVV-SWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
            M L  R  K  P L+ V +WN  +       D  + + LF  MK    + + F+   V K
Sbjct: 597  MSLIHRRLKCFPGLSSVNAWNFQVREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAK 656

Query: 60   GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
              A   YI   ++VH   I+     D F+  + VDM+ KC   D A KVF R+   D   
Sbjct: 657  ACARLAYIGYCEMVHTHLIKSPFWSDVFVGTATVDMFVKCDSLDYAAKVFERMPVRDATT 716

Query: 120  WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            W A+++   Q G   +   +F  MR   + P+   + +L+++ +     +  + +HA   
Sbjct: 717  WNAMLSGFCQSGHTDKVFSLFREMRLDEIPPDSVTVMTLIQSASFEKSLKLLKVMHAFGI 776

Query: 180  KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDS--VSWNALFSRFQDYESPDQG 237
            + G +    V N  +S Y + G +     VFEAI   D   VSWN++F  F  +      
Sbjct: 777  RLGVDLQATVSNTWISAYGKCGDLDSAKLVFEAIDRGDRTVVSWNSVFKAFAVFGEAFDA 836

Query: 238  LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
               +  ML   FKP++ TFI +  +C +   +  G+ +H+H I    D +     + + M
Sbjct: 837  FGHYRLMLRDEFKPDLSTFINLAASCQNPQTLTQGRLIHSHAIHLGTDQDIEAINTFISM 896

Query: 298  YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
            Y KSG    A + FD + ++   ++T +I+ YA+ G+ + AL  F  M   G+  +  TL
Sbjct: 897  YSKSGDSCSARLLFDIMPSRTCVSWTVMISGYAEKGDMDEALALFHAMAKTGVNPDLVTL 956

Query: 358  ASCLNGCSPVATLANGRLLHSIAVKTGHLLD-MFVSTALVAMYAKCGSIDDAEAVFKGSA 416
             S ++GC    +L  G+ +   A   G   D + V  AL+ MY+KCGSID+A  +F  ++
Sbjct: 957  LSLISGCGKFGSLEIGKWIDGRADMYGCKKDNVMVCNALIDMYSKCGSIDEARDIFDNTS 1016

Query: 417  LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
             +   +W  MI GY  +G+  +A+E F  M+D  Y P+ ITF+ VL AC+H G +E+G +
Sbjct: 1017 EKTMVTWTTMIAGYALNGIFLEAMELFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWE 1076

Query: 477  HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
            +F  +K++Y I+P + H++CM+D+LGR GK  E    I      P+A +W  LL AC  H
Sbjct: 1077 YFHIMKQVYNISPGLDHYSCMVDLLGRKGKLDEALELIHNMSAKPDAGIWGALLSACKIH 1136

Query: 537  GNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSW 596
             N+++ E+ A+ L  LEP+M + YV  S+I A  G W+ F+ +R+++    IKK P  S 
Sbjct: 1137 RNVKIAEQAADSLFNLEPQMAAPYVEMSNIYAAAGMWDGFARIRSMMKLWNIKKYPGESV 1196

Query: 597  IEVDG 601
            I+V+G
Sbjct: 1197 IQVNG 1201


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 187/599 (31%), Positives = 308/599 (51%), Gaps = 40/599 (6%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F  M E   V+W  L+ GY++    ++   LF  M+    +    +  T+L G   
Sbjct: 97  ARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGC-- 154

Query: 64  SGYIKAGQV--VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           +G+    Q+  V    I+LG      +  +LVD Y K    D A ++F  + + D   + 
Sbjct: 155 NGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTFA 214

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           A++                                    A     D   G+ IH+ + K 
Sbjct: 215 AVLC-----------------------------------ANIGLDDIVLGQQIHSFVIKT 239

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
            F  +  V NAL+  Y ++  V    ++F+ +  QD VS+N + S +           +F
Sbjct: 240 NFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLF 299

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            ++    F      F  +L   S+  D   G+Q+HA TI  + D   +VG SLVDMY K 
Sbjct: 300 RELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKC 359

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G  E+A + F +L ++    +TA+I++Y Q G  E  L+ F KMR   + +++ T AS L
Sbjct: 360 GKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLL 419

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
              + +A+L+ G+ LHS  +K+G + ++F  +AL+ +YAKCGSI DA   F+    R+  
Sbjct: 420 RASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIV 479

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SWN MI  Y ++G  E  L++F+ M+  G  PD ++F+ VLSACSH GL+EEG  HF+S+
Sbjct: 480 SWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSM 539

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
            +IY + P  +H+A ++D+L R+G+F E E  + E  + P+ ++W ++L AC  H N EL
Sbjct: 540 TQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQEL 599

Query: 542 DEKDAEKLLELEP-KMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
             + A++L  +E  +  + YV  S+I A  G+W + S V   +  +G+KK P+ SW+E+
Sbjct: 600 ARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEI 658



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 101/411 (24%), Positives = 165/411 (40%), Gaps = 72/411 (17%)

Query: 155 LTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA 214
           LTSL    +         +I A I K GF+ DT   N  V  +++NG +S   ++FE + 
Sbjct: 15  LTSLASLQSPKLRLNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMP 74

Query: 215 HQDSVS-------------------------------WNALFSRFQDYESPDQGLRIFYQ 243
           H+++VS                               W  L   +       +   +F Q
Sbjct: 75  HKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQ 134

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G +P+  TF+ +L  C+         Q+    IK   D   +VG +LVD Y KS  
Sbjct: 135 MQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNR 194

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L+ A   F  +   D F + A++   A  G  ++ L                        
Sbjct: 195 LDLACQLFKEMPEIDSFTFAAVLC--ANIGLDDIVL------------------------ 228

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
                    G+ +HS  +KT  + ++FVS AL+  Y+K  S+ DA  +F     +D  S+
Sbjct: 229 ---------GQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSY 279

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK 482
           N++I GY   G  + A + FR +    +   +  F  +LS  S+    E G++ H  +I 
Sbjct: 280 NVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTI- 338

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLT-PNALVWENLLGA 532
            +      I     ++D+  + GKF E E     T LT  +A+ W  ++ A
Sbjct: 339 -VTTADSEILVGNSLVDMYAKCGKFEEAEMIF--TNLTHRSAVPWTAMISA 386



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 87/165 (52%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E A+ +F ++   + V W A+++ Y + G  ++ + LF  M+       + + +++L+  
Sbjct: 363 EEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRAS 422

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           A+   +  G+ +H+  I+ G   + F   +L+D+Y+KCG   +A++ F  + D ++V+W 
Sbjct: 423 ASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWN 482

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
           A+I+   Q G  +   K F  M  S ++P+      ++ A + +G
Sbjct: 483 AMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSG 527


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 171/552 (30%), Positives = 295/552 (53%), Gaps = 2/552 (0%)

Query: 52  FSLSTVLKGFANSG--YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF 109
           FS +  +K + ++G  +    + +HA  +RL    D +L   ++      G  + +  VF
Sbjct: 12  FSKALEIKNYLSNGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVF 71

Query: 110 YRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
            ++K+P++  W  +I  L  + C  +A  ++  MR     PN F +  +++A     D R
Sbjct: 72  SQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVR 131

Query: 170 CGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
            G  IH+++ K G++ D  V  +L+S+Y++        +VF+ I  ++ VSW A+ + + 
Sbjct: 132 LGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYI 191

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
                 + +  F ++L  G KP+  + + +L AC+ L D   G+ +  +     +  N  
Sbjct: 192 SSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVF 251

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           V TSL+DMY K G LE A + F ++  KD+ +++ +I  YA  G  + AL  F +M+ E 
Sbjct: 252 VATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSEN 311

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           +K + +T+   L+ C+ +  L  G    S+  +   L +  + TAL+ MY+KCGS+  A 
Sbjct: 312 LKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAW 371

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
            +F     +D   WN M+ G   +G  +     F ++   G  PDE TF+ +L  C+H G
Sbjct: 372 EIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGG 431

Query: 470 LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENL 529
            + EG++ F+++K+++ +TP+I+H+ CM+D+LGRAG   E    I    + PNA+VW  L
Sbjct: 432 FVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGAL 491

Query: 530 LGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589
           LG C  H +  L E+  +KL+ELEP    NYV  S+I +   RW +   +R+ +  Q I+
Sbjct: 492 LGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQ 551

Query: 590 KEPSCSWIEVDG 601
           K  +CSWIE+DG
Sbjct: 552 KIRACSWIEIDG 563



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/443 (27%), Positives = 209/443 (47%), Gaps = 5/443 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           +K VF  + E N+  WN ++ G          +HL+ SM+      + F++  VLK  A 
Sbjct: 67  SKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACAR 126

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ G  +H++ ++ G   D F+  SL+ +Y KC   D+ALKVF  I D +VV+W AI
Sbjct: 127 KLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAI 186

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           IT     G  +EA   F  + E  +KP+ F L  ++ A    GD   GE I   I   G 
Sbjct: 187 ITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGM 246

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             +  V  +L+ MY++ G +   + +F A+  +D VSW+ +   +     P Q L +F+Q
Sbjct: 247 GRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQ 306

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +  KP+  T + +L AC++L  +  G    +   ++    N V+GT+L+DMY K G 
Sbjct: 307 MQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGS 366

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +  A   F ++  KD   + A++   +  G A+     F  +   GI+ +E T    L G
Sbjct: 367 VTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCG 426

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTA-LVAMYAKCGSIDDAEAVFKGSALRDTA- 421
           C+    +  GR   +   +   L         +V +  + G +++A  +     ++  A 
Sbjct: 427 CTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAV 486

Query: 422 SWNMMIGGYVKHG---LGEKALE 441
            W  ++GG   H    L E+ L+
Sbjct: 487 VWGALLGGCKLHKDTHLAEQVLK 509



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  +F +MPE ++VSW+ ++ GYA +G  Q+ + LF  M+    K   +++  VL  
Sbjct: 266 LERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSA 325

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A  G +  G    ++  R     +  L  +L+DMYSKCG    A ++F  +K  D V W
Sbjct: 326 CATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVW 385

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
            A++  L   G  +    +F+L+ +  ++P++     L+   T  G
Sbjct: 386 NAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGG 431


>gi|356521639|ref|XP_003529461.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial-like [Glycine max]
          Length = 699

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 194/607 (31%), Positives = 312/607 (51%), Gaps = 14/607 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLF----CSMKDMEKKFSKFSLSTVLK 59
           A+++F  +P  ++  +  ++  Y  +     V+ L+     S+      +  FS+  V K
Sbjct: 84  ARKIFNHLPTRDLYCFKVMIRAYFLNDTPSGVVSLYRLMRLSLHPTPHDYVLFSI--VFK 141

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI-KDPDVV 118
             A S   +   + H   ++     D F+   LVD Y+K    D A + F  I ++ DVV
Sbjct: 142 SCAESRDFQTLTITHCHFVK-SLPSDSFVLTCLVDAYAKFARVDEATRAFDEIHENDDVV 200

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +W ++I    Q  C +E   +FN MRE+ V  N+F + SLV A T+      G+ +H  +
Sbjct: 201 SWTSMIVAYVQNDCAREGLTLFNRMREAFVDGNEFTVGSLVSACTKLNWLHQGKWVHGFV 260

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH----QDSVSWNALFSRFQDYESP 234
            K G   ++ +  +L++MY++ G +    +VF+  +     +D VSW A+   +     P
Sbjct: 261 IKNGICVNSYLTTSLLNMYVKCGNIQDACKVFDESSSSSYDRDLVSWTAMIVGYSQRGYP 320

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
              L +F      G  PN  T   +L +C+ L +   GK LH   +K  LD +H V  +L
Sbjct: 321 HLALELFKDKKWSGILPNSVTVSSLLSSCAQLGNSVMGKLLHGLAVKCGLD-DHPVRNAL 379

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           VDMY K G + DA   F+++  KD+ ++ +II+ + Q+GEA  AL  FR+M LE    + 
Sbjct: 380 VDMYAKCGVVSDARCVFEAMLEKDVVSWNSIISGFVQSGEAYEALNLFRRMGLELFSPDA 439

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLD-MFVSTALVAMYAKCGSIDDAEAVFK 413
            T+   L+ C+ +  L  G  +H +A+K G ++  ++V TAL+  YAKCG    A  VF 
Sbjct: 440 VTVVGILSACASLGMLHLGCSVHGLALKDGLVVSSIYVGTALLNFYAKCGDARAARMVFD 499

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
               ++  +W  MIGGY   G G  +L  FR ML+E   P+E+ F  +L+ACSH G++ E
Sbjct: 500 SMGEKNAVTWGAMIGGYGMQGDGNGSLTLFRDMLEELVEPNEVVFTTILAACSHSGMVGE 559

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           G + F+ +       P++KH+ACM+D+L RAG   E  +FI    + P+  V+   L  C
Sbjct: 560 GSRLFNLMCGELNFVPSMKHYACMVDMLARAGNLEEALDFIERMPVQPSVSVFGAFLHGC 619

Query: 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPS 593
             H   EL     +K+LEL P     YV  S++ A+ GRW     VR ++  +G+ K P 
Sbjct: 620 GLHSRFELGGAAIKKMLELHPDEACYYVLVSNLYASDGRWGMVKQVREMIKQRGLNKVPG 679

Query: 594 CSWIEVD 600
           CS +E+D
Sbjct: 680 CSSVEMD 686



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 150/506 (29%), Positives = 241/506 (47%), Gaps = 17/506 (3%)

Query: 71  QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
           + +HA  +  G   D  LS  L+ +Y+  G   +A K+F  +   D+  +  +I      
Sbjct: 50  KTLHASFLIHGLTNDLLLSTKLLSLYASFGQLRHARKIFNHLPTRDLYCFKVMIRAYFLN 109

Query: 131 GCCQEAAKIFNLMRES-SVKPNQFVLTSLV-RATTETGDQRCGESIHAVICKYGFESDTL 188
                   ++ LMR S    P+ +VL S+V ++  E+ D +     H    K    SD+ 
Sbjct: 110 DTPSGVVSLYRLMRLSLHPTPHDYVLFSIVFKSCAESRDFQTLTITHCHFVK-SLPSDSF 168

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDS-VSWNALFSRFQDYESPDQGLRIFYQMLLK 247
           V   LV  Y +  RV   +R F+ I   D  VSW ++   +   +   +GL +F +M   
Sbjct: 169 VLTCLVDAYAKFARVDEATRAFDEIHENDDVVSWTSMIVAYVQNDCAREGLTLFNRMREA 228

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
               N  T   ++ AC+ L+ +  GK +H   IK+ +  N  + TSL++MY K G ++DA
Sbjct: 229 FVDGNEFTVGSLVSACTKLNWLHQGKWVHGFVIKNGICVNSYLTTSLLNMYVKCGNIQDA 288

Query: 308 GVAFD----SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
              FD    S  ++DL ++TA+I  Y+Q G   +AL+ F+  +  GI  N  T++S L+ 
Sbjct: 289 CKVFDESSSSSYDRDLVSWTAMIVGYSQRGYPHLALELFKDKKWSGILPNSVTVSSLLSS 348

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +     G+LLH +AVK G L D  V  ALV MYAKCG + DA  VF+    +D  SW
Sbjct: 349 CAQLGNSVMGKLLHGLAVKCG-LDDHPVRNALVDMYAKCGVVSDARCVFEAMLEKDVVSW 407

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I G+V+ G   +AL  FR M  E + PD +T V +LSAC+ +G++  G        K
Sbjct: 408 NSIISGFVQSGEAYEALNLFRRMGLELFSPDAVTVVGILSACASLGMLHLGCSVHGLALK 467

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
              +  +I     +++   + G        + ++    NA+ W  ++G     G      
Sbjct: 468 DGLVVSSIYVGTALLNFYAKCGD-ARAARMVFDSMGEKNAVTWGAMIGGYGMQG------ 520

Query: 544 KDAEKLLELEPKMESNYVFPSDISAT 569
            D    L L   M    V P+++  T
Sbjct: 521 -DGNGSLTLFRDMLEELVEPNEVVFT 545



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 117/276 (42%), Gaps = 33/276 (11%)

Query: 207 SRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266
           SRV   +  +  + WN+L+      + P                P+  TF  + + C++L
Sbjct: 5   SRVLR-VTTKPRLHWNSLYHHHGQKQQP----------------PSPPTFY-LSRLCTNL 46

Query: 267 SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
             +   K LHA  + H L  + ++ T L+ +Y   G L  A   F+ L  +DL+ +  +I
Sbjct: 47  PSL---KTLHASFLIHGLTNDLLLSTKLLSLYASFGQLRHARKIFNHLPTRDLYCFKVMI 103

Query: 327 TSYAQAGEAEMALKCFRKMRLE-GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH 385
            +Y         +  +R MRL      +++ L S +       + A  R   ++ +   H
Sbjct: 104 RAYFLNDTPSGVVSLYRLMRLSLHPTPHDYVLFSIV-----FKSCAESRDFQTLTITHCH 158

Query: 386 LL-----DMFVSTALVAMYAKCGSIDDAEAVF-KGSALRDTASWNMMIGGYVKHGLGEKA 439
            +     D FV T LV  YAK   +D+A   F +     D  SW  MI  YV++    + 
Sbjct: 159 FVKSLPSDSFVLTCLVDAYAKFARVDEATRAFDEIHENDDVVSWTSMIVAYVQNDCAREG 218

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           L  F  M +     +E T   ++SAC+ +  + +GK
Sbjct: 219 LTLFNRMREAFVDGNEFTVGSLVSACTKLNWLHQGK 254


>gi|212274935|ref|NP_001130299.1| uncharacterized protein LOC100191393 [Zea mays]
 gi|194688780|gb|ACF78474.1| unknown [Zea mays]
 gi|414586171|tpg|DAA36742.1| TPA: hypothetical protein ZEAMMB73_518704 [Zea mays]
          Length = 695

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 177/552 (32%), Positives = 292/552 (52%), Gaps = 6/552 (1%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
           ++ +L+  A S  ++ G  +H    ++G   D  L  +L+DMY KCG  D A +VF  ++
Sbjct: 7   IAGLLRASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFGGMR 66

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESS-VKPNQFVLTSLVRATTETGDQRCGE 172
           D +VV+W A++    + G      ++   MR +S   PN++ L++ ++A    GD   G 
Sbjct: 67  DRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTAAGV 126

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSV-SWNALFSRFQDY 231
            IH +  + G++   +V ++LV +Y + GR+    RVF+       + +WNA+ S +   
Sbjct: 127 GIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHA 186

Query: 232 ESPDQGLRIFYQMLLK--GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKH--SLDGN 287
                 L +F +M       +P+  TF  +LKACS L     G Q+HA       S   N
Sbjct: 187 GHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTASGFSTASN 246

Query: 288 HVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL 347
            ++  +LVDMY K   L  A   F+ L  K++  +TA++  +AQ G+   AL+ FR+   
Sbjct: 247 AILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFWR 306

Query: 348 EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
            G + +   L+S +   +  A +  GR +H   +K     D+    ++V MY KCG  D+
Sbjct: 307 SGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPDE 366

Query: 408 AEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
           AE +F+     +  SW  M+ G  KHGLG +A+  F  M   G  PDE+T++ +LSACSH
Sbjct: 367 AERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACSH 426

Query: 468 MGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWE 527
            GL++E +++FS I++   + P  +H+ACM+D+LGRAG+  E  + I    + P   VW+
Sbjct: 427 AGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQ 486

Query: 528 NLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQG 587
            LL AC  H ++ +  +  + LL ++     NYV  S++ A  G W +   VR  +  +G
Sbjct: 487 TLLSACRVHKDVAVGREAGDVLLAMDGDNPVNYVTLSNVLAEAGEWRECHKVRDAMRRRG 546

Query: 588 IKKEPSCSWIEV 599
           +KK+  CSW+EV
Sbjct: 547 LKKQGGCSWVEV 558



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 122/424 (28%), Positives = 195/424 (45%), Gaps = 17/424 (4%)

Query: 151 NQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF 210
            Q ++  L+RA+  +   R G  +H  I K GF SDT++GN L+ MY++ G +     VF
Sbjct: 3   RQKMIAGLLRASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVF 62

Query: 211 EAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG-FKPNMCTFIVILKACSSLSDV 269
             +  ++ VSW AL   F  +      LR+  +M       PN  T    LKAC  + D 
Sbjct: 63  GGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDT 122

Query: 270 GFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA-NKDLFAYTAIITS 328
             G  +H   ++     + VV +SLV +Y K G + DA   FD       +  + A+++ 
Sbjct: 123 AAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSG 182

Query: 329 YAQAGEAEMALKCFRKMRL-EGI-KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL 386
           YA AG    AL  FR+MR  EG  + +EFT AS L  CS +     G  +H+    +G  
Sbjct: 183 YAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTASGFS 242

Query: 387 L--DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
              +  ++ ALV MY KC  +  A  VF+    ++   W  ++ G+ + G   +ALE FR
Sbjct: 243 TASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALELFR 302

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGR 503
                G  PD      V+   +   L+E+G++ H   IK   G   +  +   ++D+  +
Sbjct: 303 RFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGTDVSAGN--SIVDMYLK 360

Query: 504 AGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFP 563
            G   E E    E +  PN + W  ++     HG      ++A  L E   +M +  V P
Sbjct: 361 CGLPDEAERMFREMR-APNVVSWTTMVNGLGKHGL----GREAVALFE---EMRAGGVEP 412

Query: 564 SDIS 567
            +++
Sbjct: 413 DEVT 416



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 179/371 (48%), Gaps = 6/371 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDM-EKKFSKFSLSTVLK 59
           ++LA  VF  M + NVVSW AL+ G+   GD    + L   M+   E   ++++LS  LK
Sbjct: 55  LDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLK 114

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
                G   AG  +H + +R G      ++ SLV +YSK G   +A +VF        + 
Sbjct: 115 ACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIA 174

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMR--ESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
            W A+++     G  ++A  +F  MR  E   +P++F   SL++A +  G  R G  +HA
Sbjct: 175 TWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHA 234

Query: 177 VICKYGFE--SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
            +   GF   S+ ++  ALV MY++  R+    +VFE +  ++ + W A+          
Sbjct: 235 AMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQV 294

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
            + L +F +    G +P+      ++   +  + V  G+Q+H + IK     +   G S+
Sbjct: 295 TEALELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGTDVSAGNSI 354

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           VDMY K G  ++A   F  +   ++ ++T ++    + G    A+  F +MR  G++ +E
Sbjct: 355 VDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDE 414

Query: 355 FTLASCLNGCS 365
            T  + L+ CS
Sbjct: 415 VTYLALLSACS 425


>gi|242076082|ref|XP_002447977.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
 gi|241939160|gb|EES12305.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
          Length = 772

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 180/605 (29%), Positives = 321/605 (53%), Gaps = 11/605 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNG---YAESGDGQKVMHLFCSMK-DMEKKFSKFSLSTVLK 59
           A ++F+ M E +VV+W A+++G     E GDG + +     +  D + + +  ++ + L+
Sbjct: 168 AVKLFEEMRERDVVAWTAVVSGCVRNGECGDGLRYLVEMVRLAGDGKARPNSRTMESGLE 227

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
                  + +G+ +H  A+++G      +  +L  MYSKC   ++A  +F  + + DVV+
Sbjct: 228 ACGVLDELNSGRCLHGYAVKVGVGDSPMVISALFSMYSKCHSTEDACSLFPELPEKDVVS 287

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W ++I     +G  +EA ++F  M ES ++P+  +++ L+     +G+   G++ HAVI 
Sbjct: 288 WTSLIGIYCWRGLIREAMELFQEMMESGLQPDDVLVSCLLSGLGNSGNVHGGKAFHAVIM 347

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K  F  + LVGNAL+SMY +   V    RVF  +  +D+ SWN +   +       + L 
Sbjct: 348 KRNFGDNVLVGNALISMYGKFELVDNAGRVFRLLHQRDADSWNLMIVGYCKAGCDVKCLE 407

Query: 240 IFYQMLLKGFKPNMC---TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
           ++ +M  +     +C   + +  + +CS L ++  G+  H ++IKH LD +  V   L+ 
Sbjct: 408 LYREMQFRDTYEFLCDANSLVSAISSCSRLVELRLGRSAHCYSIKHWLDEDSSVANVLIG 467

Query: 297 MYDKSGCLEDAGVAFDSLANK-DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
           MY + G  + A   F     K D+  +  +I+SYA  G +  A+  + +M  EG+  N  
Sbjct: 468 MYGRCGKFDHACKIFGLAKLKGDVVTWNTLISSYAHLGHSNTAVSLYDQMLTEGLTPNST 527

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
           TL + ++ C+ +  L  G  +HS   + G   D+ ++TAL+ MYAKCG +  A  +F   
Sbjct: 528 TLITVISACANLVALERGEKIHSYVKEMGWDYDVSINTALIDMYAKCGQLGTARRIFDSM 587

Query: 416 ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
              D  +WN+MI GY  HG  ++ALE F  M      P+ +TF+ +LSAC H GL+EEG+
Sbjct: 588 LQHDVVAWNVMISGYGMHGEAKQALELFGKMEGGSIKPNGVTFLAILSACCHSGLLEEGR 647

Query: 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
           + F+ + K Y + P +KH+ACM+D+LG++G   E E+ +    + P+  +W  LL AC  
Sbjct: 648 QLFTRMGK-YSLEPNLKHYACMVDLLGKSGHLQEAEDMVLAMPVEPDGGIWGTLLSACKL 706

Query: 536 HGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCS 595
           H + E+  + A+K    + + E  Y+  S+   +  +W++   +R  + + G++K     
Sbjct: 707 HDDFEMGLRIAKKAFASDAENEGYYILISNSYGSAKKWDEIEKLREAMKNHGVQK--GAG 764

Query: 596 WIEVD 600
           W  VD
Sbjct: 765 WSAVD 769



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 151/579 (26%), Positives = 269/579 (46%), Gaps = 25/579 (4%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           LA   F + P  +   WN+L+  +  + D    ++    M     + S F++       A
Sbjct: 62  LAALAFSACPRPDAFLWNSLIRTHHCASDFVAALNAHRRMLASSARPSPFTVPLAASAAA 121

Query: 63  NSGYIKAGQVVHAMAIRLGC-ALDK---FLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
             G +  G  VHA  +R G  A+D     +  SLV MY++CG+  +A+K+F  +++ DVV
Sbjct: 122 ELGALGVGASVHAYCVRYGLLAVDGGSVAVPSSLVYMYARCGVVRDAVKLFEEMRERDVV 181

Query: 119 AWGAIITCLDQQGCCQEAAK----IFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
           AW A+++   + G C +  +    +  L  +   +PN   + S + A     +   G  +
Sbjct: 182 AWTAVVSGCVRNGECGDGLRYLVEMVRLAGDGKARPNSRTMESGLEACGVLDELNSGRCL 241

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H    K G     +V +AL SMY +         +F  +  +D VSW +L   +      
Sbjct: 242 HGYAVKVGVGDSPMVISALFSMYSKCHSTEDACSLFPELPEKDVVSWTSLIGIYCWRGLI 301

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
            + + +F +M+  G +P+      +L    +  +V  GK  HA  +K +   N +VG +L
Sbjct: 302 REAMELFQEMMESGLQPDDVLVSCLLSGLGNSGNVHGGKAFHAVIMKRNFGDNVLVGNAL 361

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           + MY K   +++AG  F  L  +D  ++  +I  Y +AG     L+ +R+M+     + E
Sbjct: 362 ISMYGKFELVDNAGRVFRLLHQRDADSWNLMIVGYCKAGCDVKCLELYREMQFR--DTYE 419

Query: 355 F-----TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           F     +L S ++ CS +  L  GR  H  ++K     D  V+  L+ MY +CG  D A 
Sbjct: 420 FLCDANSLVSAISSCSRLVELRLGRSAHCYSIKHWLDEDSSVANVLIGMYGRCGKFDHAC 479

Query: 410 AVFKGSALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
            +F  + L+ D  +WN +I  Y   G    A+  +  ML EG  P+  T + V+SAC+++
Sbjct: 480 KIFGLAKLKGDVVTWNTLISSYAHLGHSNTAVSLYDQMLTEGLTPNSTTLITVISACANL 539

Query: 469 GLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWEN 528
             +E G+K  S +K++ G    +     +ID+  + G+       I ++ L  + + W  
Sbjct: 540 VALERGEKIHSYVKEM-GWDYDVSINTALIDMYAKCGQLGTARR-IFDSMLQHDVVAWNV 597

Query: 529 LLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           ++     HG       +A++ LEL  KME   + P+ ++
Sbjct: 598 MISGYGMHG-------EAKQALELFGKMEGGSIKPNGVT 629



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 121/415 (29%), Positives = 199/415 (47%), Gaps = 10/415 (2%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E A  +F  +PE +VVSW +L+  Y   G  ++ M LF  M +   +     +S +L G 
Sbjct: 271 EDACSLFPELPEKDVVSWTSLIGIYCWRGLIREAMELFQEMMESGLQPDDVLVSCLLSGL 330

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
            NSG +  G+  HA+ ++     +  +  +L+ MY K  L DNA +VF  +   D  +W 
Sbjct: 331 GNSGNVHGGKAFHAVIMKRNFGDNVLVGNALISMYGKFELVDNAGRVFRLLHQRDADSWN 390

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPN-QFV-----LTSLVRATTETGDQRCGESIH 175
            +I    + GC     K   L RE   +   +F+     L S + + +   + R G S H
Sbjct: 391 LMIVGYCKAGC---DVKCLELYREMQFRDTYEFLCDANSLVSAISSCSRLVELRLGRSAH 447

Query: 176 AVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFE-AIAHQDSVSWNALFSRFQDYESP 234
               K+  + D+ V N L+ MY   G+  +  ++F  A    D V+WN L S +      
Sbjct: 448 CYSIKHWLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLISSYAHLGHS 507

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
           +  + ++ QML +G  PN  T I ++ AC++L  +  G+++H++  +   D +  + T+L
Sbjct: 508 NTAVSLYDQMLTEGLTPNSTTLITVISACANLVALERGEKIHSYVKEMGWDYDVSINTAL 567

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           +DMY K G L  A   FDS+   D+ A+  +I+ Y   GEA+ AL+ F KM    IK N 
Sbjct: 568 IDMYAKCGQLGTARRIFDSMLQHDVVAWNVMISGYGMHGEAKQALELFGKMEGGSIKPNG 627

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
            T  + L+ C     L  GR L +   K     ++     +V +  K G + +AE
Sbjct: 628 VTFLAILSACCHSGLLEEGRQLFTRMGKYSLEPNLKHYACMVDLLGKSGHLQEAE 682



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 135/473 (28%), Positives = 216/473 (45%), Gaps = 20/473 (4%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           VHA+A+  G +    +   LV  YS  G    A   F     PD   W ++I       C
Sbjct: 31  VHALAVTSGLSQRPDIVAKLVSAYSSAGRPGLAALAFSACPRPDAFLWNSLIR---THHC 87

Query: 133 CQEAAKIFNLMRE---SSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES---- 185
             +     N  R    SS +P+ F +     A  E G    G S+HA   +YG  +    
Sbjct: 88  ASDFVAALNAHRRMLASSARPSPFTVPLAASAAAELGALGVGASVHAYCVRYGLLAVDGG 147

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
              V ++LV MY   G V    ++FE +  +D V+W A+ S          GLR   +M+
Sbjct: 148 SVAVPSSLVYMYARCGVVRDAVKLFEEMRERDVVAWTAVVSGCVRNGECGDGLRYLVEMV 207

Query: 246 -LKG---FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            L G    +PN  T    L+AC  L ++  G+ LH + +K  +  + +V ++L  MY K 
Sbjct: 208 RLAGDGKARPNSRTMESGLEACGVLDELNSGRCLHGYAVKVGVGDSPMVISALFSMYSKC 267

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
              EDA   F  L  KD+ ++T++I  Y   G    A++ F++M   G++ ++  ++  L
Sbjct: 268 HSTEDACSLFPELPEKDVVSWTSLIGIYCWRGLIREAMELFQEMMESGLQPDDVLVSCLL 327

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           +G      +  G+  H++ +K     ++ V  AL++MY K   +D+A  VF+    RD  
Sbjct: 328 SGLGNSGNVHGGKAFHAVIMKRNFGDNVLVGNALISMYGKFELVDNAGRVFRLLHQRDAD 387

Query: 422 SWNMMIGGYVKHGLGEKALEAFR-MMLDEGY--VPDEITFVVVLSACSHMGLIEEGKK-H 477
           SWN+MI GY K G   K LE +R M   + Y  + D  + V  +S+CS +  +  G+  H
Sbjct: 388 SWNLMIVGYCKAGCDVKCLELYREMQFRDTYEFLCDANSLVSAISSCSRLVELRLGRSAH 447

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
             SIK       ++ +   +I + GR GKF          KL  + + W  L+
Sbjct: 448 CYSIKHWLDEDSSVANV--LIGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLI 498



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 129/302 (42%), Gaps = 19/302 (6%)

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
           ++HA  +   L     +   LV  Y  +G    A +AF +    D F + ++I ++  A 
Sbjct: 30  RVHALAVTSGLSQRPDIVAKLVSAYSSAGRPGLAALAFSACPRPDAFLWNSLIRTHHCAS 89

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL----DM 389
           +   AL   R+M     + + FT+    +  + +  L  G  +H+  V+ G L      +
Sbjct: 90  DFVAALNAHRRMLASSARPSPFTVPLAASAAAELGALGVGASVHAYCVRYGLLAVDGGSV 149

Query: 390 FVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKAL----EAFRM 445
            V ++LV MYA+CG + DA  +F+    RD  +W  ++ G V++G     L    E  R+
Sbjct: 150 AVPSSLVYMYARCGVVRDAVKLFEEMRERDVVAWTAVVSGCVRNGECGDGLRYLVEMVRL 209

Query: 446 MLDEGYVPDEITFVVVLSACSHMGLIEEGK-KHFSSIKKIYGITPTIKHFACMIDILGRA 504
             D    P+  T    L AC  +  +  G+  H  ++K   G +P +   + +  +  + 
Sbjct: 210 AGDGKARPNSRTMESGLEACGVLDELNSGRCLHGYAVKVGVGDSPMV--ISALFSMYSKC 267

Query: 505 GKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564
               +  +   E     + + W +L+G   W G I        + +EL  +M  + + P 
Sbjct: 268 HSTEDACSLFPELP-EKDVVSWTSLIGIYCWRGLI-------REAMELFQEMMESGLQPD 319

Query: 565 DI 566
           D+
Sbjct: 320 DV 321


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 184/591 (31%), Positives = 313/591 (52%), Gaps = 39/591 (6%)

Query: 42  MKDMEKKFSKFSLSTVLKGFANSGYIK-AGQVVHAMAIRLGCALDKFLSCSLVDMYSKCG 100
           ++ +      + L+T+L  +A+SG +  A +V  AM  R     +     SL+   ++ G
Sbjct: 37  LRTLPHPSPTYLLNTLLTAYASSGLLPHARRVFDAMPGR-----NLVTGNSLLSALARAG 91

Query: 101 LADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIF-NLMR-ESSVKPNQFVLTSL 158
           L  +  ++F  +   D V++ A++    + G    AA  +  L+R E+ V+P++  ++ +
Sbjct: 92  LVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGV 151

Query: 159 VRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF-------- 210
           V   +  GD+  G  +H  I + GF +    G+ LV MY + G +    RVF        
Sbjct: 152 VMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNV 211

Query: 211 -----------------------EAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK 247
                                  EAI  +DS++W  + +         + L +F +M  +
Sbjct: 212 VMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAE 271

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           G   +  TF  IL AC +L+ +  GKQ+HA+  +   + N  VG++LVDMY K   +  A
Sbjct: 272 GVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLA 331

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367
              F  +  K++ ++TA+I  Y Q G  E A++ F +M+ +GIK ++FTL S ++ C+ +
Sbjct: 332 EAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANL 391

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
           A+L  G   H +A+ +G    + VS ALV +Y KCGSI+DA  +F   +  D  SW  ++
Sbjct: 392 ASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALV 451

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGI 487
            GY + G  ++ ++ F  ML +G  PD +TF+ VLSACS  GL+++G+ +F S+++ + I
Sbjct: 452 MGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDI 511

Query: 488 TPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAE 547
            P   H+ CMID+  R+G   + E FI +    P+A  W  LL AC   G++E+ +  AE
Sbjct: 512 VPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGDMEIGKWAAE 571

Query: 548 KLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
            LL+L+P+  ++YV    + A++G WND + +R  +  + +KKEP CSWI+
Sbjct: 572 NLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWIK 622



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 123/447 (27%), Positives = 209/447 (46%), Gaps = 42/447 (9%)

Query: 5   KRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK--KFSKFSLSTVLKGFA 62
           +R+F S+P+ + VS+NALL G++ +G   +    + ++   E   + S+ ++S V+   +
Sbjct: 97  ERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVAS 156

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYR----------- 111
             G    G+ VH   +RLG     F    LVDMY+K G   +A +VF             
Sbjct: 157 ALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNT 216

Query: 112 --------------------IKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPN 151
                               I++ D + W  ++T L Q G   EA  +F  MR   V  +
Sbjct: 217 MITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGID 276

Query: 152 QFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFE 211
           Q+   S++ A         G+ IHA I +  +E +  VG+ALV MY +   V     VF 
Sbjct: 277 QYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFR 336

Query: 212 AIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGF 271
            +  ++ +SW A+   +      ++ +R+F +M   G KP+  T   ++ +C++L+ +  
Sbjct: 337 RMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEE 396

Query: 272 GKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQ 331
           G Q H   +   L     V  +LV +Y K G +EDA   FD ++  D  ++TA++  YAQ
Sbjct: 397 GAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQ 456

Query: 332 AGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR-LLHSIAVKTGH----L 386
            G+A+  +  F KM  +G+K +  T    L+ CS    +  GR   HS+  +  H    L
Sbjct: 457 FGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSM--QQDHDIVPL 514

Query: 387 LDMFVSTALVAMYAKCGSIDDAEAVFK 413
            D +  T ++ +Y++ G +  AE   K
Sbjct: 515 DDHY--TCMIDLYSRSGWLKQAEEFIK 539



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 127/481 (26%), Positives = 213/481 (44%), Gaps = 82/481 (17%)

Query: 173 SIHAVICK-YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF--- 228
           ++HA+I +     S T + N L++ Y  +G + +  RVF+A+  ++ V+ N+L S     
Sbjct: 31  AVHALILRTLPHPSPTYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARA 90

Query: 229 ---QDYE----SPDQGLRIFYQMLLKGF-----------------------KPNMCTFIV 258
              +D E    S  Q   + Y  LL GF                       +P+  T   
Sbjct: 91  GLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSG 150

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK- 317
           ++   S+L D   G+Q+H   ++         G+ LVDMY K G + DA   FD +  K 
Sbjct: 151 VVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKN 210

Query: 318 ------------------------------DLFAYTAIITSYAQAGEAEMALKCFRKMRL 347
                                         D   +T ++T   Q G    AL  FR+MR 
Sbjct: 211 VVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRA 270

Query: 348 EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
           EG+  +++T  S L  C  +A L  G+ +H+   +T +  ++FV +ALV MY+KC S+  
Sbjct: 271 EGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRL 330

Query: 408 AEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
           AEAVF+    ++  SW  MI GY ++G GE+A+  F  M  +G  PD+ T   V+S+C++
Sbjct: 331 AEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCAN 390

Query: 468 MGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWE 527
           +  +EEG + F  +  + G+ P +     ++ + G+ G   +      E     + + W 
Sbjct: 391 LASLEEGAQ-FHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFH-DQVSWT 448

Query: 528 NLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQG 587
            L+   +  G        A++ ++L  KM S  V P  ++        F GV +  S  G
Sbjct: 449 ALVMGYAQFGK-------AKETIDLFEKMLSKGVKPDGVT--------FIGVLSACSRSG 493

Query: 588 I 588
           +
Sbjct: 494 L 494



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 168/339 (49%), Gaps = 8/339 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F+++ E + ++W  ++ G  ++G   + + +F  M+       +++  ++L     
Sbjct: 230 ARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGA 289

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ G+ +HA   R     + F+  +LVDMYSKC     A  VF R+   ++++W A+
Sbjct: 290 LAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAM 349

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q GC +EA ++F+ M+   +KP+ F L S++ +         G   H +    G 
Sbjct: 350 IVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGL 409

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
                V NALV++Y + G +    R+F+ ++  D VSW AL   +  +    + + +F +
Sbjct: 410 RPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEK 469

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQ-LHAHTIKH---SLDGNHVVGTSLVDMYD 299
           ML KG KP+  TFI +L ACS    V  G+   H+    H    LD ++   T ++D+Y 
Sbjct: 470 MLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHY---TCMIDLYS 526

Query: 300 KSGCLEDAGVAFDSLAN-KDLFAYTAIITSYAQAGEAEM 337
           +SG L+ A      +    D F +  ++++    G+ E+
Sbjct: 527 RSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGDMEI 565



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 87/166 (52%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + LA+ VF+ M   N++SW A++ GY ++G G++ + +F  M+    K   F+L +V+  
Sbjct: 328 VRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISS 387

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            AN   ++ G   H +A+  G      +S +LV +Y KCG  ++A ++F  +   D V+W
Sbjct: 388 CANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSW 447

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
            A++    Q G  +E   +F  M    VKP+      ++ A + +G
Sbjct: 448 TALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSG 493



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 9/161 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A R+F  M   + VSW AL+ GYA+ G  ++ + LF  M     K    +   VL  
Sbjct: 429 IEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSA 488

Query: 61  FANSGYIKAGQ-VVHAMAIRLG-CALDKFLSCSLVDMYSKCGLADNALKVFYRI-KDPDV 117
            + SG +  G+   H+M        LD   +C ++D+YS+ G    A +   ++ + PD 
Sbjct: 489 CSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTC-MIDLYSRSGWLKQAEEFIKQMPRCPDA 547

Query: 118 VAWGAIITCLDQQG---CCQEAAKIFNLMRESSVKPNQFVL 155
             W  +++    +G     + AA+  NL++     P  +VL
Sbjct: 548 FGWATLLSACRLRGDMEIGKWAAE--NLLKLDPQNPASYVL 586


>gi|357484133|ref|XP_003612353.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513688|gb|AES95311.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 178/600 (29%), Positives = 323/600 (53%), Gaps = 15/600 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLKGFA 62
           A RVF  + E +VV+WN +++G+A++GD + V  LF  M ++   K  + + +++LK   
Sbjct: 204 ALRVFYGLLERDVVAWNVMISGFAQNGDFRMVQRLFSEMWEEQGLKPDRITFASLLKC-- 261

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
               +     +H +  + G  +D  +  ++VD+Y+KC    +  K+F  ++  D   W +
Sbjct: 262 -CSVLNEVMQIHGIVYKFGAEVDVVVESAMVDLYAKCRDVSSCRKIFDSMEKKDNFVWSS 320

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I+        +EA   F  M    VK +Q VL+S ++A  E  D   G  +H ++ K G
Sbjct: 321 MISGYTMNNRGEEAVNFFKDMCRQRVKLDQHVLSSTLKACVEIEDLNTGVQVHGLMIKNG 380

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG----L 238
            ++D  V + L+++Y   G +    ++F  I  +D V+WN++         P QG    +
Sbjct: 381 HQNDCFVASVLLNLYASFGELGDVEKLFSRIDDKDIVAWNSMILA---QARPGQGCGRCM 437

Query: 239 RIFYQMLLKGF-KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           ++F ++    F +    T + +LK+C   SD+  G+Q+H+  +K SL  + +VG +LV M
Sbjct: 438 QLFQELRRTTFLQIQGATLVAVLKSCEKDSDLPAGRQIHSLIVKSSLCRHTLVGNALVHM 497

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y +   ++DA  AF  +  KD  ++++II +  Q      AL+  ++M  EGI    ++L
Sbjct: 498 YSECKQIDDAFKAFVDIVRKDDSSWSSIIGTCKQNRMESKALELCKEMLDEGINFTSYSL 557

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
             C++ CS + T++ G+ LH  A+K+G+  D+++ ++++ MYAKCG+I+++E VF     
Sbjct: 558 PLCISACSQLLTISEGKQLHVFAIKSGYSCDVYIGSSIIDMYAKCGNIEESEKVFDEQLK 617

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
            +  ++N +I GY  HG  ++A+E    +   G  P+ +TF+ ++SACSH G +EE    
Sbjct: 618 PNEVTFNAIISGYAHHGKAQQAIEVLSKLEKNGVAPNHVTFLALMSACSHAGYVEETSHL 677

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F+ +   Y I P  +H++C++D  GRAG+  E    + +     +   W  LL AC  H 
Sbjct: 678 FTLMLDKYKIKPKSEHYSCLVDAYGRAGRLEEAYQIVQK---DGSESAWRTLLSACRNHS 734

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           N ++ EK A K++EL P   + Y+  S+I   +G W +    R  ++   +KK+P  SW+
Sbjct: 735 NRKIGEKSAMKMIELNPSDHAPYILLSNIYIEEGNWEEALNCRKKMAKIRVKKDPGNSWL 794



 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 165/575 (28%), Positives = 288/575 (50%), Gaps = 30/575 (5%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A ++F  MP  NVV+W  L++ + + G   K   +F  M+  +++ ++ + + +L+   N
Sbjct: 102 AHKLFDKMPNRNVVTWTTLISSHLKYGSVSKAFEMFNHMRVSDERPNENTFAVLLRACTN 161

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCG--LADNALKVFYRIKDPDVVAWG 121
                 G  +H + +R G   +KF   SLV MY K G  L D AL+VFY + + DVVAW 
Sbjct: 162 RELWSVGLQIHGLLVRCGLEREKFAGSSLVYMYLKGGDDLRD-ALRVFYGLLERDVVAWN 220

Query: 122 AIITCLDQQGCCQEAAKIFNLM-RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +I+   Q G  +   ++F+ M  E  +KP++    SL++  +   +      IH ++ K
Sbjct: 221 VMISGFAQNGDFRMVQRLFSEMWEEQGLKPDRITFASLLKCCSVLNEVM---QIHGIVYK 277

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +G E D +V +A+V +Y +   VS   ++F+++  +D+  W+++ S +      ++ +  
Sbjct: 278 FGAEVDVVVESAMVDLYAKCRDVSSCRKIFDSMEKKDNFVWSSMISGYTMNNRGEEAVNF 337

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  M  +  K +       LKAC  + D+  G Q+H   IK+    +  V + L+++Y  
Sbjct: 338 FKDMCRQRVKLDQHVLSSTLKACVEIEDLNTGVQVHGLMIKNGHQNDCFVASVLLNLYAS 397

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL-EGIKSNEF---- 355
            G L D    F  + +KD+ A+ ++I + A+ G+      C R M+L + ++   F    
Sbjct: 398 FGELGDVEKLFSRIDDKDIVAWNSMILAQARPGQG-----CGRCMQLFQELRRTTFLQIQ 452

Query: 356 --TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
             TL + L  C   + L  GR +HS+ VK+       V  ALV MY++C  IDDA   F 
Sbjct: 453 GATLVAVLKSCEKDSDLPAGRQIHSLIVKSSLCRHTLVGNALVHMYSECKQIDDAFKAFV 512

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
               +D +SW+ +IG   ++ +  KALE  + MLDEG      +  + +SACS +  I E
Sbjct: 513 DIVRKDDSSWSSIIGTCKQNRMESKALELCKEMLDEGINFTSYSLPLCISACSQLLTISE 572

Query: 474 GKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
           GK+ H  +IK  Y     I   + +ID+  + G   E E    E +L PN + +  ++  
Sbjct: 573 GKQLHVFAIKSGYSCDVYIG--SSIIDMYAKCGNIEESEKVFDE-QLKPNEVTFNAIISG 629

Query: 533 CSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            + HG        A++ +E+  K+E N V P+ ++
Sbjct: 630 YAHHGK-------AQQAIEVLSKLEKNGVAPNHVT 657



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 121/415 (29%), Positives = 205/415 (49%), Gaps = 7/415 (1%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           +HA  I         L+ +L+  YSK      A K+F ++ + +VV W  +I+   + G 
Sbjct: 70  IHAQLIITQYISQTHLANTLLSFYSKSSNFHYAHKLFDKMPNRNVVTWTTLISSHLKYGS 129

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
             +A ++FN MR S  +PN+     L+RA T       G  IH ++ + G E +   G++
Sbjct: 130 VSKAFEMFNHMRVSDERPNENTFAVLLRACTNRELWSVGLQIHGLLVRCGLEREKFAGSS 189

Query: 193 LVSMYMENG-RVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML-LKGFK 250
           LV MY++ G  +    RVF  +  +D V+WN + S F          R+F +M   +G K
Sbjct: 190 LVYMYLKGGDDLRDALRVFYGLLERDVVAWNVMISGFAQNGDFRMVQRLFSEMWEEQGLK 249

Query: 251 PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVA 310
           P+  TF  +LK CS L++V    Q+H    K   + + VV +++VD+Y K   +      
Sbjct: 250 PDRITFASLLKCCSVLNEV---MQIHGIVYKFGAEVDVVVESAMVDLYAKCRDVSSCRKI 306

Query: 311 FDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATL 370
           FDS+  KD F ++++I+ Y      E A+  F+ M  + +K ++  L+S L  C  +  L
Sbjct: 307 FDSMEKKDNFVWSSMISGYTMNNRGEEAVNFFKDMCRQRVKLDQHVLSSTLKACVEIEDL 366

Query: 371 ANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGY 430
             G  +H + +K GH  D FV++ L+ +YA  G + D E +F     +D  +WN MI   
Sbjct: 367 NTGVQVHGLMIKNGHQNDCFVASVLLNLYASFGELGDVEKLFSRIDDKDIVAWNSMILAQ 426

Query: 431 VKHGLG-EKALEAFRMMLDEGYVPDE-ITFVVVLSACSHMGLIEEGKKHFSSIKK 483
            + G G  + ++ F+ +    ++  +  T V VL +C     +  G++  S I K
Sbjct: 427 ARPGQGCGRCMQLFQELRRTTFLQIQGATLVAVLKSCEKDSDLPAGRQIHSLIVK 481



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 154/313 (49%), Gaps = 6/313 (1%)

Query: 155 LTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA 214
           L SL + +      +C + IHA +    + S T + N L+S Y ++    Y  ++F+ + 
Sbjct: 52  LLSLAKKSNPIILTQCNQ-IHAQLIITQYISQTHLANTLLSFYSKSSNFHYAHKLFDKMP 110

Query: 215 HQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ 274
           +++ V+W  L S    Y S  +   +F  M +   +PN  TF V+L+AC++      G Q
Sbjct: 111 NRNVVTWTTLISSHLKYGSVSKAFEMFNHMRVSDERPNENTFAVLLRACTNRELWSVGLQ 170

Query: 275 LHAHTIKHSLDGNHVVGTSLVDMYDKSG-CLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
           +H   ++  L+     G+SLV MY K G  L DA   F  L  +D+ A+  +I+ +AQ G
Sbjct: 171 IHGLLVRCGLEREKFAGSSLVYMYLKGGDDLRDALRVFYGLLERDVVAWNVMISGFAQNG 230

Query: 334 EAEMALKCFRKMRLE-GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS 392
           +  M  + F +M  E G+K +  T AS L  CS +  +     +H I  K G  +D+ V 
Sbjct: 231 DFRMVQRLFSEMWEEQGLKPDRITFASLLKCCSVLNEVMQ---IHGIVYKFGAEVDVVVE 287

Query: 393 TALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV 452
           +A+V +YAKC  +     +F     +D   W+ MI GY  +  GE+A+  F+ M  +   
Sbjct: 288 SAMVDLYAKCRDVSSCRKIFDSMEKKDNFVWSSMISGYTMNNRGEEAVNFFKDMCRQRVK 347

Query: 453 PDEITFVVVLSAC 465
            D+      L AC
Sbjct: 348 LDQHVLSSTLKAC 360



 Score = 39.7 bits (91), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 30/133 (22%), Positives = 64/133 (48%), Gaps = 17/133 (12%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E +++VF    + N V++NA+++GYA  G  Q+ + +   ++      +  +   ++  
Sbjct: 605 IEESEKVFDEQLKPNEVTFNAIISGYAHHGKAQQAIEVLSKLEKNGVAPNHVTFLALMSA 664

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKF--------LSCSLVDMYSKCGLADNALKVFYRI 112
            +++GY++  +  H   +     LDK+         SC LVD Y + G  + A ++    
Sbjct: 665 CSHAGYVE--ETSHLFTL----MLDKYKIKPKSEHYSC-LVDAYGRAGRLEEAYQIVQ-- 715

Query: 113 KDPDVVAWGAIIT 125
           KD    AW  +++
Sbjct: 716 KDGSESAWRTLLS 728


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 184/557 (33%), Positives = 293/557 (52%), Gaps = 11/557 (1%)

Query: 50  SKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADN----- 104
           S+  L   L        +   + +HA  +R    +D F +  +V     C L D+     
Sbjct: 36  SQIQLHPCLLSLEKCTTMSQLKQIHAQMLRTCLFVDPFSASKIVAF---CALHDSGSLPY 92

Query: 105 ALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTE 164
           A  VF +I +P      +II     +   ++A   + LM    + P++F   SL ++   
Sbjct: 93  ARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGV 152

Query: 165 TGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNAL 224
             +   G+ +H    K GF SD  + N L++MY   G +    +VF+ + ++  VSW  +
Sbjct: 153 LCE---GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATM 209

Query: 225 FSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL 284
              +  ++ P + +++F +M +   KPN  T + +L AC+   D+   KQ+H +  +  +
Sbjct: 210 IGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGI 269

Query: 285 DGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRK 344
             + V+ ++L+D+Y K GC   A   F+ +  K+LF +  +I  + +  + E AL  F +
Sbjct: 270 GFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNE 329

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404
           M+L G+K ++ T+AS L  C+ +  L  G+ LH    K    +D+ + TALV MYAKCGS
Sbjct: 330 MQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGS 389

Query: 405 IDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
           I+ A  VF+    +D  +W  +I G    G G KALE F  M      PD ITFV VL+A
Sbjct: 390 IESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAA 449

Query: 465 CSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNAL 524
           CSH GL+ EG  +F+S+   YGI P+I+H+ CM+D+LGRAG+  E E+ I    + P+  
Sbjct: 450 CSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYF 509

Query: 525 VWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLS 584
           V   LL AC  HGN+ + E+ A++L+EL+PK    YV  S+I ++   W     +R L+ 
Sbjct: 510 VLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMV 569

Query: 585 SQGIKKEPSCSWIEVDG 601
            + IKK P CS IEV G
Sbjct: 570 ERNIKKPPGCSAIEVGG 586



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/418 (26%), Positives = 201/418 (48%), Gaps = 4/418 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A+ VF  +P     + N+++ GY      ++ +  +  M        +F+  ++   
Sbjct: 90  LPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSL--- 146

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           F + G +  G+ +H  + +LG A D ++  +L++MYS CG   +A KVF ++ +  VV+W
Sbjct: 147 FKSCGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSW 206

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I    Q     EA K+F  M  +SVKPN+  L +++ A   + D    + +H  I +
Sbjct: 207 ATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDE 266

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G    T++ +AL+ +Y + G       +F  +  ++   WN + +   +    ++ L +
Sbjct: 267 TGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSL 326

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M L G K +  T   +L AC+ L  +  GK LH +  K  ++ +  +GT+LVDMY K
Sbjct: 327 FNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAK 386

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +E A   F  +  KD+  +TA+I   A  G+   AL+ F +M++  +K +  T    
Sbjct: 387 CGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGV 446

Query: 361 LNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           L  CS    +  G    +S+  K G    +     +V M  + G I +AE + +   +
Sbjct: 447 LAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPM 504


>gi|449523774|ref|XP_004168898.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 190/554 (34%), Positives = 291/554 (52%), Gaps = 2/554 (0%)

Query: 49  FSKFSLSTVLKGFANSGYIKAGQVVHAMAIR-LGCALDKFLSCSLVDMYSKCGLADNALK 107
            S+ SL++V++   +      G+  HA  ++ L      FL   LV+MY+K    ++A  
Sbjct: 4   LSQNSLASVVELAVSVRSSLLGRAAHAQILKTLKTPFPAFLYNHLVNMYAKLDHLNSAKL 63

Query: 108 VFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD 167
           +        VV W A+I    Q GC   A   F+ M    V+PN F    +++A+T    
Sbjct: 64  ILELAPCRSVVTWTALIAGSVQNGCFVSALLHFSDMLSDCVRPNDFTFPCVLKASTGLRM 123

Query: 168 QRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR 227
              G+ +HA+  K G  +D  VG ++  MY + G ++   +VF+ + H++  +WNA  S 
Sbjct: 124 DTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAYISN 183

Query: 228 FQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGN 287
              +  P+  +  F ++L  G KP+  TF   L ACS    +G G QLH   I+     N
Sbjct: 184 SVLHGRPEDSVIAFIELLRVGGKPDSITFCXFLNACSDKLGLGPGCQLHGFIIRSGYGQN 243

Query: 288 HVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL 347
             V   L+D Y K G +E + + FD +  ++  +++++I +Y Q  E E A   F + R 
Sbjct: 244 VSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLRARK 303

Query: 348 EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
           E I+  +F ++S L  C+ ++ +  GR + ++AVK     ++FV++ALV MY KCGSID+
Sbjct: 304 EDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGSIDN 363

Query: 408 AEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD-EGYVPDEITFVVVLSACS 466
           AE  F     R+  SWN ++GGY   G   KA+     M    G VP  ++ +  LSACS
Sbjct: 364 AEQAFNAMPERNLVSWNALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICALSACS 423

Query: 467 HMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVW 526
             G ++ G K F S+K+ YG+ P  +H+AC++D+LGRAG      +FI      P   +W
Sbjct: 424 RAGDLKTGMKIFESMKERYGVEPGPEHYACLVDLLGRAGMVECAYDFIKRMPFPPTISIW 483

Query: 527 ENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQ 586
             LLGAC  HG  EL +  AEKL EL+PK   N+V  S++ A  GRW + + VR  +   
Sbjct: 484 GALLGACRMHGKPELGKLAAEKLFELDPKDSGNHVVLSNMFAATGRWEEVTVVRNEMKEV 543

Query: 587 GIKKEPSCSWIEVD 600
           GIKK    SWI VD
Sbjct: 544 GIKKGAGFSWITVD 557



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/444 (26%), Positives = 207/444 (46%), Gaps = 6/444 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AK + +  P  +VV+W AL+ G  ++G     +  F  M     + + F+   VLK    
Sbjct: 61  AKLILELAPCRSVVTWTALIAGSVQNGCFVSALLHFSDMLSDCVRPNDFTFPCVLKASTG 120

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G+ +HA+A++ G   D F+ CS+ DMYSK G  ++A KVF  +   ++  W A 
Sbjct: 121 LRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAY 180

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+     G  +++   F  +     KP+       + A ++      G  +H  I + G+
Sbjct: 181 ISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCXFLNACSDKLGLGPGCQLHGFIIRSGY 240

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             +  V N L+  Y + G V     VF+ +  ++SVSW++L + +      ++   +F +
Sbjct: 241 GQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLR 300

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
              +  +P       +L AC+ LS++ FG+ + A  +K  ++ N  V ++LVDMY K G 
Sbjct: 301 ARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGS 360

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFTLASCLN 362
           +++A  AF+++  ++L ++ A++  YA  G A  A+    +M    GI  +  +L   L+
Sbjct: 361 IDNAEQAFNAMPERNLVSWNALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICALS 420

Query: 363 GCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
            CS    L  G ++  S+  + G          LV +  + G ++ A    K      T 
Sbjct: 421 ACSRAGDLKTGMKIFESMKERYGVEPGPEHYACLVDLLGRAGMVECAYDFIKRMPFPPTI 480

Query: 422 S-WNMMIGGYVKHG---LGEKALE 441
           S W  ++G    HG   LG+ A E
Sbjct: 481 SIWGALLGACRMHGKPELGKLAAE 504



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 117/240 (48%), Gaps = 3/240 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E ++ VF  M E N VSW++L+  Y ++ + +K   LF   +  + + + F +S+VL  
Sbjct: 260 VECSEMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCA 319

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    I+ G+ V A+A++     + F++ +LVDMY KCG  DNA + F  + + ++V+W
Sbjct: 320 CAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGSIDNAEQAFNAMPERNLVSW 379

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESS-VKPNQFVLTSLVRATTETGDQRCGESI-HAVI 178
            A++     QG   +A  +   M  ++ + P+   L   + A +  GD + G  I  ++ 
Sbjct: 380 NALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICALSACSRAGDLKTGMKIFESMK 439

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS-WNALFSRFQDYESPDQG 237
            +YG E        LV +    G V       + +    ++S W AL    + +  P+ G
Sbjct: 440 ERYGVEPGPEHYACLVDLLGRAGMVECAYDFIKRMPFPPTISIWGALLGACRMHGKPELG 499


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 171/552 (30%), Positives = 295/552 (53%), Gaps = 2/552 (0%)

Query: 52  FSLSTVLKGFANSG--YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF 109
           FS +  +K + ++G  +    + +HA  +RL    D +L   ++      G  + +  VF
Sbjct: 12  FSKALEIKNYLSNGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVF 71

Query: 110 YRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
            ++K+P++  W  +I  L  + C  +A  ++  MR     PN F +  +++A     D R
Sbjct: 72  SQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVR 131

Query: 170 CGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
            G  IH+++ K G++ D  V  +L+S+Y++        +VF+ I  ++ VSW A+ + + 
Sbjct: 132 LGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYI 191

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
                 + +  F ++L  G KP+  + + +L AC+ L D   G+ +  +     +  N  
Sbjct: 192 SSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVF 251

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           V TSL+DMY K G LE A + F ++  KD+ +++ +I  YA  G  + AL  F +M+ E 
Sbjct: 252 VATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSEN 311

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           +K + +T+   L+ C+ +  L  G    S+  +   L +  + TAL+ MY+KCGS+  A 
Sbjct: 312 LKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAW 371

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
            +F     +D   WN M+ G   +G  +     F ++   G  PDE TF+ +L  C+H G
Sbjct: 372 EIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGG 431

Query: 470 LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENL 529
            + EG++ F+++K+++ +TP+I+H+ CM+D+LGRAG   E    I    + PNA+VW  L
Sbjct: 432 FVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGAL 491

Query: 530 LGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589
           LG C  H +  L E+  +KL+ELEP    NYV  S+I +   RW +   +R+ +  Q I+
Sbjct: 492 LGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQ 551

Query: 590 KEPSCSWIEVDG 601
           K  +CSWIE+DG
Sbjct: 552 KIRACSWIEIDG 563



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/443 (27%), Positives = 209/443 (47%), Gaps = 5/443 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           +K VF  + E N+  WN ++ G          +HL+ SM+      + F++  VLK  A 
Sbjct: 67  SKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACAR 126

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ G  +H++ ++ G   D F+  SL+ +Y KC   D+ALKVF  I D +VV+W AI
Sbjct: 127 KLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAI 186

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           IT     G  +EA   F  + E  +KP+ F L  ++ A    GD   GE I   I   G 
Sbjct: 187 ITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGM 246

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             +  V  +L+ MY++ G +   + +F A+  +D VSW+ +   +     P Q L +F+Q
Sbjct: 247 GRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQ 306

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +  KP+  T + +L AC++L  +  G    +   ++    N V+GT+L+DMY K G 
Sbjct: 307 MQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGS 366

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +  A   F ++  KD   + A++   +  G A+     F  +   GI+ +E T    L G
Sbjct: 367 VTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCG 426

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTA-LVAMYAKCGSIDDAEAVFKGSALRDTA- 421
           C+    +  GR   +   +   L         +V +  + G +++A  +     ++  A 
Sbjct: 427 CTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAV 486

Query: 422 SWNMMIGGYVKHG---LGEKALE 441
            W  ++GG   H    L E+ L+
Sbjct: 487 VWGALLGGCKLHKDTHLAEQVLK 509



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  +F +MPE ++VSW+ ++ GYA +G  Q+ + LF  M+    K   +++  VL  
Sbjct: 266 LERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSA 325

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A  G +  G    ++  R     +  L  +L+DMYSKCG    A ++F  +K  D V W
Sbjct: 326 CATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVW 385

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
            A++  L   G  +    +F+L+ +  ++P++     L+   T  G
Sbjct: 386 NAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGG 431


>gi|413944451|gb|AFW77100.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 678

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 186/603 (30%), Positives = 310/603 (51%), Gaps = 9/603 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-----KDMEKKFSKFSLSTVL 58
           A+R+F  MP  N+VSW+ +++G A  G   +   LF  M          +   F+L  ++
Sbjct: 60  ARRLFDEMPRRNLVSWSVVISGSAHHGVLAEAFALFSHMLHGAGHGSWDRPDSFTLGALV 119

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
            G + +  + AG  VHA   + G   D  ++ +LVDMY+KCG  D++ + F       V+
Sbjct: 120 AGCSRARDVDAGMQVHACVAKFGVDEDDSVAAALVDMYAKCGWVDSSWRAFTLAPQRSVL 179

Query: 119 AWGAIITCLDQQGCC---QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH 175
           +W ++I CL  QG       +  +F  M    V P     + +++          G  +H
Sbjct: 180 SWTSMIACLVNQGSSGYYDTSLLLFKKMLALKVWPTNATYSCILKVFDTPDLLSVGMQLH 239

Query: 176 AVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD 235
             + K G E DT +G AL++MY   G V    R+   I H D++S  AL   +       
Sbjct: 240 GCLLKMGTEVDTALGTALMTMYGRCGGVDEIPRLACRIRH-DALSRTALLGAYARTGYNA 298

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
           + + +F +M++K    +      +L+ CSS   +   +Q+H + +K     + ++  + +
Sbjct: 299 EAIGVFKEMIMKNMAIDQSAMTGMLQVCSSFGQLRMVRQVHCYALKTFFKLDTLLLNATI 358

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
            +Y + G +  A   F  +   D+ ++TA++T Y Q G  E  L  FRKM  +G+ S  F
Sbjct: 359 TVYGRCGDINSAETVFYLMEENDIISWTALLTCYTQNGLDEEVLLFFRKMLRKGLGSPVF 418

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
            + S L   S ++ LA G  +HS  +K G   D  V  ALV +YA CGS+  A  +F   
Sbjct: 419 CITSVLRASSSISNLAVGLQIHSRTLKLGIDDDNSVQNALVTLYANCGSVQVALKIFNSM 478

Query: 416 ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           + RD  +WN ++  + +HG    A++ F +M +EG  PD  TFV +LS+CS MGL++EG 
Sbjct: 479 SNRDIVTWNALLTSFSQHGSEVAAIQLFDLMQEEGICPDAYTFVGLLSSCSRMGLVKEGC 538

Query: 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
           ++F+ +K+ Y + P + H+ CM+D+L RAG+F +  +FI      P+ ++WE LL +C  
Sbjct: 539 EYFNEMKEKYNLEPKMVHYTCMVDLLARAGRFCDAMDFIDAMPYEPDQILWEALLASCKV 598

Query: 536 HGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCS 595
           HGN+ L    A+K+LE+ P   S Y+  S I A+   W++    R +  +Q  +K+   S
Sbjct: 599 HGNLGLGRIAAKKILEITPHDYSAYIILSSIHASVDMWDEKYWNRTVFDTQRARKDTGRS 658

Query: 596 WIE 598
           WI+
Sbjct: 659 WID 661



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 148/555 (26%), Positives = 246/555 (44%), Gaps = 62/555 (11%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           VH +AI+LGC +  FL  +L+  Y +  +  +A ++F  +   ++V+W  +I+     G 
Sbjct: 28  VHGVAIKLGCIVSTFLCNNLLYAYLRRQVPADARRLFDEMPRRNLVSWSVVISGSAHHGV 87

Query: 133 CQEAAKIFNLMRE-----SSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDT 187
             EA  +F+ M       S  +P+ F L +LV   +   D   G  +HA + K+G + D 
Sbjct: 88  LAEAFALFSHMLHGAGHGSWDRPDSFTLGALVAGCSRARDVDAGMQVHACVAKFGVDEDD 147

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP---DQGLRIFYQM 244
            V  ALV MY + G V    R F     +  +SW ++ +   +  S    D  L +F +M
Sbjct: 148 SVAAALVDMYAKCGWVDSSWRAFTLAPQRSVLSWTSMIACLVNQGSSGYYDTSLLLFKKM 207

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
           L     P   T+  ILK   +   +  G QLH   +K   + +  +GT+L+ MY + G +
Sbjct: 208 LALKVWPTNATYSCILKVFDTPDLLSVGMQLHGCLLKMGTEVDTALGTALMTMYGRCGGV 267

Query: 305 EDAGVAFDSLANK---DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           ++       LA +   D  + TA++ +YA+ G    A+  F++M ++ +  ++  +   L
Sbjct: 268 DE----IPRLACRIRHDALSRTALLGAYARTGYNAEAIGVFKEMIMKNMAIDQSAMTGML 323

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
             CS    L   R +H  A+KT   LD  +  A + +Y +CG I+ AE VF      D  
Sbjct: 324 QVCSSFGQLRMVRQVHCYALKTFFKLDTLLLNATITVYGRCGDINSAETVFYLMEENDII 383

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSS 480
           SW  ++  Y ++GL E+ L  FR ML +G          VL A S +  +  G + H  +
Sbjct: 384 SWTALLTCYTQNGLDEEVLLFFRKMLRKGLGSPVFCITSVLRASSSISNLAVGLQIHSRT 443

Query: 481 IK--------------KIYG----ITPTIKHFACMI--DILGRAGKFT------------ 508
           +K               +Y     +   +K F  M   DI+      T            
Sbjct: 444 LKLGIDDDNSVQNALVTLYANCGSVQVALKIFNSMSNRDIVTWNALLTSFSQHGSEVAAI 503

Query: 509 EIENFITETKLTPNALVWENLLGACSWHGNI--------ELDEKDAEKLLELEPKMESNY 560
           ++ + + E  + P+A  +  LL +CS  G +        E+ EK       LEPKM  +Y
Sbjct: 504 QLFDLMQEEGICPDAYTFVGLLSSCSRMGLVKEGCEYFNEMKEK-----YNLEPKM-VHY 557

Query: 561 VFPSDISATQGRWND 575
               D+ A  GR+ D
Sbjct: 558 TCMVDLLARAGRFCD 572



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 168/387 (43%), Gaps = 26/387 (6%)

Query: 172 ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY 231
            S+H V  K G    T + N L+  Y+     +   R+F+ +  ++ VSW+ + S    +
Sbjct: 26  HSVHGVAIKLGCIVSTFLCNNLLYAYLRRQVPADARRLFDEMPRRNLVSWSVVISGSAHH 85

Query: 232 ESPDQGLRIFYQMLLKGF-----KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDG 286
               +   +F  ML         +P+  T   ++  CS   DV  G Q+HA   K  +D 
Sbjct: 86  GVLAEAFALFSHMLHGAGHGSWDRPDSFTLGALVAGCSRARDVDAGMQVHACVAKFGVDE 145

Query: 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEA---EMALKCFR 343
           +  V  +LVDMY K G ++ +  AF     + + ++T++I      G +   + +L  F+
Sbjct: 146 DDSVAAALVDMYAKCGWVDSSWRAFTLAPQRSVLSWTSMIACLVNQGSSGYYDTSLLLFK 205

Query: 344 KMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403
           KM    +     T +  L        L+ G  LH   +K G  +D  + TAL+ MY +CG
Sbjct: 206 KMLALKVWPTNATYSCILKVFDTPDLLSVGMQLHGCLLKMGTEVDTALGTALMTMYGRCG 265

Query: 404 SIDDAEAV---FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVV 460
            +D+   +    +  AL  TA    ++G Y + G   +A+  F+ M+ +    D+     
Sbjct: 266 GVDEIPRLACRIRHDALSRTA----LLGAYARTGYNAEAIGVFKEMIMKNMAIDQSAMTG 321

Query: 461 VLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIEN--FITET 517
           +L  CS  G +   ++ H  ++K  + +   +      I + GR G     E   ++ E 
Sbjct: 322 MLQVCSSFGQLRMVRQVHCYALKTFFKLDTLL--LNATITVYGRCGDINSAETVFYLMEE 379

Query: 518 KLTPNALVWENLLGACSWHGNIELDEK 544
               + + W  LL   + +G   LDE+
Sbjct: 380 N---DIISWTALLTCYTQNG---LDEE 400



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 10/149 (6%)

Query: 366 PVATL----ANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           P+A L     N   +H +A+K G ++  F+   L+  Y +     DA  +F     R+  
Sbjct: 14  PLAALLRSGGNPHSVHGVAIKLGCIVSTFLCNNLLYAYLRRQVPADARRLFDEMPRRNLV 73

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLD-EGY----VPDEITFVVVLSACSHMGLIEEGKK 476
           SW+++I G   HG+  +A   F  ML   G+     PD  T   +++ CS    ++ G +
Sbjct: 74  SWSVVISGSAHHGVLAEAFALFSHMLHGAGHGSWDRPDSFTLGALVAGCSRARDVDAGMQ 133

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAG 505
             + + K +G+       A ++D+  + G
Sbjct: 134 VHACVAK-FGVDEDDSVAAALVDMYAKCG 161



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/133 (21%), Positives = 61/133 (45%), Gaps = 2/133 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +++A ++F SM   ++V+WNALL  +++ G     + LF  M++       ++   +L  
Sbjct: 468 VQVALKIFNSMSNRDIVTWNALLTSFSQHGSEVAAIQLFDLMQEEGICPDAYTFVGLLSS 527

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            +  G +K G +  + M  +            +VD+ ++ G   +A+     +  +PD +
Sbjct: 528 CSRMGLVKEGCEYFNEMKEKYNLEPKMVHYTCMVDLLARAGRFCDAMDFIDAMPYEPDQI 587

Query: 119 AWGAIITCLDQQG 131
            W A++      G
Sbjct: 588 LWEALLASCKVHG 600


>gi|449433319|ref|XP_004134445.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 190/554 (34%), Positives = 291/554 (52%), Gaps = 2/554 (0%)

Query: 49  FSKFSLSTVLKGFANSGYIKAGQVVHAMAIR-LGCALDKFLSCSLVDMYSKCGLADNALK 107
            S+ SL++V++   +      G+  HA  ++ L      FL   LV+MY+K    ++A  
Sbjct: 4   LSQNSLASVVELAVSVRSSLLGRAAHAQILKTLKTPFPAFLYNHLVNMYAKLDHLNSAKL 63

Query: 108 VFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD 167
           +        VV W A+I    Q GC   A   F+ M    V+PN F    +++A+T    
Sbjct: 64  ILELAPCRSVVTWTALIAGSVQNGCFVSALLHFSDMLSDCVRPNDFTFPCVLKASTGLRM 123

Query: 168 QRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR 227
              G+ +HA+  K G  +D  VG ++  MY + G ++   +VF+ + H++  +WNA  S 
Sbjct: 124 DTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAYISN 183

Query: 228 FQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGN 287
              +  P+  +  F ++L  G KP+  TF   L ACS    +G G QLH   I+     N
Sbjct: 184 SVLHGRPEDSVIAFIELLRVGGKPDSITFCAFLNACSDKLGLGPGCQLHGFIIRSGYGQN 243

Query: 288 HVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL 347
             V   L+D Y K G +E + + FD +  ++  +++++I +Y Q  E E A   F + R 
Sbjct: 244 VSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLRARK 303

Query: 348 EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
           E I+  +F ++S L  C+ ++ +  GR + ++AVK     ++FV++ALV MY KCGSID+
Sbjct: 304 EDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGSIDN 363

Query: 408 AEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD-EGYVPDEITFVVVLSACS 466
           AE  F     R+  SWN ++GGY   G   KA+     M    G VP  ++ +  LSACS
Sbjct: 364 AEQAFNAMPERNLVSWNALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICALSACS 423

Query: 467 HMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVW 526
             G ++ G K F S+K+ YG+ P  +H+AC++D+LGRAG      +FI      P   +W
Sbjct: 424 RAGDLKTGMKIFESMKERYGVEPGPEHYACLVDLLGRAGMVECAYDFIKRMPFPPTISIW 483

Query: 527 ENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQ 586
             LLGAC  HG  EL +  AEKL EL+PK   N+V  S++ A  GRW + + VR  +   
Sbjct: 484 GALLGACRMHGKPELGKLAAEKLFELDPKDSGNHVVLSNMFAATGRWEEVTVVRNEMKEV 543

Query: 587 GIKKEPSCSWIEVD 600
           GIKK    SWI VD
Sbjct: 544 GIKKGAGFSWITVD 557



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/444 (26%), Positives = 208/444 (46%), Gaps = 6/444 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AK + +  P  +VV+W AL+ G  ++G     +  F  M     + + F+   VLK    
Sbjct: 61  AKLILELAPCRSVVTWTALIAGSVQNGCFVSALLHFSDMLSDCVRPNDFTFPCVLKASTG 120

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G+ +HA+A++ G   D F+ CS+ DMYSK G  ++A KVF  +   ++  W A 
Sbjct: 121 LRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAY 180

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+     G  +++   F  +     KP+     + + A ++      G  +H  I + G+
Sbjct: 181 ISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCAFLNACSDKLGLGPGCQLHGFIIRSGY 240

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             +  V N L+  Y + G V     VF+ +  ++SVSW++L + +      ++   +F +
Sbjct: 241 GQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLR 300

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
              +  +P       +L AC+ LS++ FG+ + A  +K  ++ N  V ++LVDMY K G 
Sbjct: 301 ARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGS 360

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFTLASCLN 362
           +++A  AF+++  ++L ++ A++  YA  G A  A+    +M    GI  +  +L   L+
Sbjct: 361 IDNAEQAFNAMPERNLVSWNALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICALS 420

Query: 363 GCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
            CS    L  G ++  S+  + G          LV +  + G ++ A    K      T 
Sbjct: 421 ACSRAGDLKTGMKIFESMKERYGVEPGPEHYACLVDLLGRAGMVECAYDFIKRMPFPPTI 480

Query: 422 S-WNMMIGGYVKHG---LGEKALE 441
           S W  ++G    HG   LG+ A E
Sbjct: 481 SIWGALLGACRMHGKPELGKLAAE 504



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 117/240 (48%), Gaps = 3/240 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E ++ VF  M E N VSW++L+  Y ++ + +K   LF   +  + + + F +S+VL  
Sbjct: 260 VECSEMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCA 319

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    I+ G+ V A+A++     + F++ +LVDMY KCG  DNA + F  + + ++V+W
Sbjct: 320 CAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGSIDNAEQAFNAMPERNLVSW 379

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESS-VKPNQFVLTSLVRATTETGDQRCGESI-HAVI 178
            A++     QG   +A  +   M  ++ + P+   L   + A +  GD + G  I  ++ 
Sbjct: 380 NALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICALSACSRAGDLKTGMKIFESMK 439

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS-WNALFSRFQDYESPDQG 237
            +YG E        LV +    G V       + +    ++S W AL    + +  P+ G
Sbjct: 440 ERYGVEPGPEHYACLVDLLGRAGMVECAYDFIKRMPFPPTISIWGALLGACRMHGKPELG 499


>gi|255542116|ref|XP_002512122.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549302|gb|EEF50791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 800

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 184/598 (30%), Positives = 315/598 (52%), Gaps = 4/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AK+VF +M   ++VSW+++++ Y ++G+  + + +F  +   + +    ++ ++      
Sbjct: 153 AKKVFDNMTTRDLVSWSSIISCYVDNGESSEGLEMFRLLVSQDVELDSVTMLSIAGACGE 212

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G+++  + VH   IR        L+ +LV MYS+C    +A ++F  + +  + +W A+
Sbjct: 213 LGFLRLAKSVHGCIIRQRIETRGPLNDALVLMYSRCDDFSSAERIFSNMFNRSIASWTAM 272

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+C ++    ++A ++F  M E  V PN   + +++ +       R G+S+H    K+  
Sbjct: 273 ISCYNRSRWFKQALQVFVEMLEFKVAPNAVTIMAVLSSCAGFNLLREGKSVHCYAVKHID 332

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D  +G AL+  Y + G++SY  +V   I  ++ +SWN L S +       + L IF Q
Sbjct: 333 LDDDSLGPALIEYYAQFGKLSYCEKVLHTIGKRNIISWNMLISVYASQGLFKEALGIFVQ 392

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK-HSLDGNHVVGTSLVDMYDKSG 302
           M  +G  P+  +    + AC+++  +  G Q+H + IK H LD    V  SL+DMY K G
Sbjct: 393 MQRQGQIPDSFSLSSSISACANVGLLWLGHQIHGYAIKRHILD--EFVQNSLIDMYSKCG 450

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            ++ A + FD + +K + A+ ++I  ++Q G +  A++ F +M L  +  NE T  + + 
Sbjct: 451 HVDLAYLIFDRIQSKSVVAWNSMICGFSQIGNSLEAIRLFDQMYLNCLDMNEVTFLTAIQ 510

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            CS +  L  G+ LH   +  G   D+F+ TAL+ MYAKCG +  A  VF   + R   S
Sbjct: 511 ACSHMGHLEKGKWLHHKLIAYGVKKDLFIDTALIDMYAKCGDLRIAHRVFDSMSERSVVS 570

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           W+ MIGG   HG  + A+  F  M+     P++ITF+ +LSACSH G +EEGK +F+S+K
Sbjct: 571 WSAMIGGCGMHGDIDAAISLFAEMIQREMKPNDITFMNILSACSHSGYVEEGKFYFNSMK 630

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
             + + P ++HFACM+D+L RAG   E    I        A +W  LL  C  H  +++ 
Sbjct: 631 N-FEVEPNLEHFACMVDLLSRAGDLDEAYRIINSMPFPAEASIWGALLNGCRIHQRMDMI 689

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
                 LL++       Y   S+I A +G W+    VR+ +   G+KK P  S IE+D
Sbjct: 690 RNIERDLLDMRTDDTGYYTLLSNIYAEEGNWDVSRKVRSAMKGIGLKKVPGYSTIELD 747



 Score =  235 bits (600), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 156/568 (27%), Positives = 278/568 (48%), Gaps = 12/568 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ +K VF++    +   W  L+  +  S    + + L+  M   +   S F  S+VL+ 
Sbjct: 49  LQSSKLVFETFQNPDSFMWAVLIKCHVWSNFCGEAISLYNKMIYKQIPISDFIFSSVLRA 108

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A  G +  G+ VH   I+ G  +D  +  SL+ MY   G   NA KVF  +   D+V+W
Sbjct: 109 CAGFGNLDVGEEVHGRIIKYGLDVDHVVETSLLGMYGDLGCLSNAKKVFDNMTTRDLVSW 168

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +II+C    G   E  ++F L+    V+ +   + S+  A  E G  R  +S+H  I +
Sbjct: 169 SSIISCYVDNGESSEGLEMFRLLVSQDVELDSVTMLSIAGACGELGFLRLAKSVHGCIIR 228

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              E+   + +ALV MY      S   R+F  + ++   SW A+ S +       Q L++
Sbjct: 229 QRIETRGPLNDALVLMYSRCDDFSSAERIFSNMFNRSIASWTAMISCYNRSRWFKQALQV 288

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +ML     PN  T + +L +C+  + +  GK +H + +KH    +  +G +L++ Y +
Sbjct: 289 FVEMLEFKVAPNAVTIMAVLSSCAGFNLLREGKSVHCYAVKHIDLDDDSLGPALIEYYAQ 348

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L        ++  +++ ++  +I+ YA  G  + AL  F +M+ +G   + F+L+S 
Sbjct: 349 FGKLSYCEKVLHTIGKRNIISWNMLISVYASQGLFKEALGIFVQMQRQGQIPDSFSLSSS 408

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           ++ C+ V  L  G  +H  A+K  H+LD FV  +L+ MY+KCG +D A  +F     +  
Sbjct: 409 ISACANVGLLWLGHQIHGYAIKR-HILDEFVQNSLIDMYSKCGHVDLAYLIFDRIQSKSV 467

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK-KHFS 479
            +WN MI G+ + G   +A+  F  M       +E+TF+  + ACSHMG +E+GK  H  
Sbjct: 468 VAWNSMICGFSQIGNSLEAIRLFDQMYLNCLDMNEVTFLTAIQACSHMGHLEKGKWLHHK 527

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
            I   YG+   +     +ID+  + G    I + + ++    + + W  ++G C  HG+I
Sbjct: 528 LIA--YGVKKDLFIDTALIDMYAKCGDL-RIAHRVFDSMSERSVVSWSAMIGGCGMHGDI 584

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDIS 567
           +       ++++ E K       P+DI+
Sbjct: 585 DAAISLFAEMIQREMK-------PNDIT 605



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 126/479 (26%), Positives = 237/479 (49%), Gaps = 5/479 (1%)

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           F +   ++   ++H+  +  G   D   S  L++ YS+ G   ++  VF   ++PD   W
Sbjct: 8   FRSCTSLRPLTLLHSHLLVTGLHHDPQASTKLIESYSQIGCLQSSKLVFETFQNPDSFMW 67

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I C      C EA  ++N M    +  + F+ +S++RA    G+   GE +H  I K
Sbjct: 68  AVLIKCHVWSNFCGEAISLYNKMIYKQIPISDFIFSSVLRACAGFGNLDVGEEVHGRIIK 127

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           YG + D +V  +L+ MY + G +S   +VF+ +  +D VSW+++ S + D     +GL +
Sbjct: 128 YGLDVDHVVETSLLGMYGDLGCLSNAKKVFDNMTTRDLVSWSSIISCYVDNGESSEGLEM 187

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  ++ +  + +  T + I  AC  L  +   K +H   I+  ++    +  +LV MY +
Sbjct: 188 FRLLVSQDVELDSVTMLSIAGACGELGFLRLAKSVHGCIIRQRIETRGPLNDALVLMYSR 247

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
                 A   F ++ N+ + ++TA+I+ Y ++   + AL+ F +M    +  N  T+ + 
Sbjct: 248 CDDFSSAERIFSNMFNRSIASWTAMISCYNRSRWFKQALQVFVEMLEFKVAPNAVTIMAV 307

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L+ C+    L  G+ +H  AVK   L D  +  AL+  YA+ G +   E V      R+ 
Sbjct: 308 LSSCAGFNLLREGKSVHCYAVKHIDLDDDSLGPALIEYYAQFGKLSYCEKVLHTIGKRNI 367

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFS 479
            SWNM+I  Y   GL ++AL  F  M  +G +PD  +    +SAC+++GL+  G + H  
Sbjct: 368 ISWNMLISVYASQGLFKEALGIFVQMQRQGQIPDSFSLSSSISACANVGLLWLGHQIHGY 427

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           +IK+ + +   +++   +ID+  + G   ++   I +   + + + W +++   S  GN
Sbjct: 428 AIKR-HILDEFVQN--SLIDMYSKCGH-VDLAYLIFDRIQSKSVVAWNSMICGFSQIGN 482



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 112/236 (47%), Gaps = 1/236 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++LA  +F  +   +VV+WN+++ G+++ G+  + + LF  M       ++ +  T ++ 
Sbjct: 452 VDLAYLIFDRIQSKSVVAWNSMICGFSQIGNSLEAIRLFDQMYLNCLDMNEVTFLTAIQA 511

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ++ G+++ G+ +H   I  G   D F+  +L+DMY+KCG    A +VF  + +  VV+W
Sbjct: 512 CSHMGHLEKGKWLHHKLIAYGVKKDLFIDTALIDMYAKCGDLRIAHRVFDSMSERSVVSW 571

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I      G    A  +F  M +  +KPN     +++ A + +G    G+     +  
Sbjct: 572 SAMIGGCGMHGDIDAAISLFAEMIQREMKPNDITFMNILSACSHSGYVEEGKFYFNSMKN 631

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS-WNALFSRFQDYESPD 235
           +  E +      +V +    G +    R+  ++      S W AL +  + ++  D
Sbjct: 632 FEVEPNLEHFACMVDLLSRAGDLDEAYRIINSMPFPAEASIWGALLNGCRIHQRMD 687


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 185/575 (32%), Positives = 293/575 (50%), Gaps = 66/575 (11%)

Query: 91  SLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKP 150
           +++  ++K G  D+A +VF  I  PD V+W  +I   +  G  + A   F  M  S + P
Sbjct: 84  TILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISP 143

Query: 151 NQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF 210
            QF  T+++ +         G+ +H+ + K G      V N+L++MY + G       VF
Sbjct: 144 TQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVF 203

Query: 211 EAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM----------LLKGF----------- 249
           + +  +D+ +WN + S    +   D  L +F QM          ++ G+           
Sbjct: 204 DRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALE 263

Query: 250 -----------KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
                      KP+  T   +L AC++   +  GKQ+HAH ++  +D    VG +L+ MY
Sbjct: 264 TFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMY 323

Query: 299 DKSGCLE---------------------------------DAGVAFDSLANKDLFAYTAI 325
            KSG +E                                  A   FDSL ++D+ A+TA+
Sbjct: 324 AKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAM 383

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH 385
           I  YAQ G    AL  FR M  EG K N +TLA+ L+  S +A+L +G+ LH++A++   
Sbjct: 384 IVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEE 443

Query: 386 LLDMFVSTALVAMYAKCGSIDDAEAVFKG-SALRDTASWNMMIGGYVKHGLGEKALEAFR 444
           +  + V  AL+ MY++ GSI DA  +F    + RDT +W  MI    +HGLG +A+E F 
Sbjct: 444 VSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFE 503

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA 504
            ML     PD IT+V VLSAC+H+GL+E+GK +F+ +K ++ I PT  H+ACMID+LGRA
Sbjct: 504 KMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRA 563

Query: 505 GKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564
           G   E  NFI    + P+ + W +LL +C  H  ++L +  AEKLL ++P     Y+  +
Sbjct: 564 GLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALA 623

Query: 565 DISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +  +  G+W D + VR  +  + +KKE   SW+++
Sbjct: 624 NTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQI 658



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 144/559 (25%), Positives = 250/559 (44%), Gaps = 87/559 (15%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+RVF  +P+ + VSW  ++ GY   G  +  +H F  M       ++F+ + VL  
Sbjct: 95  LDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLAS 154

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLA------------------ 102
            A +  +  G+ VH+  ++LG +    ++ SL++MY+KCG +                  
Sbjct: 155 CAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTW 214

Query: 103 -------------DNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLM-RESSV 148
                        D AL +F ++ DPD+V+W +IIT    QG    A + F+ M + SS+
Sbjct: 215 NTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSL 274

Query: 149 KPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSR 208
           KP++F L S++ A       + G+ IHA I +   +    VGNAL+SMY ++G V    R
Sbjct: 275 KPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHR 334

Query: 209 ---------------------------------VFEAIAHQDSVSWNALFSRFQDYESPD 235
                                            +F+++ H+D V+W A+   +       
Sbjct: 335 IVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLIS 394

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
             L +F  M+ +G KPN  T   +L   SSL+ +  GKQLHA  I+     +  VG +L+
Sbjct: 395 DALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALI 454

Query: 296 DMYDKSGCLEDAGVAFDSLAN-KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
            MY +SG ++DA   F+ + + +D   +T++I S AQ G    A++ F KM    +K + 
Sbjct: 455 TMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDH 514

Query: 355 FTLASCLNGCSPVATLANGRL-------LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
            T    L+ C+ V  +  G+        +H+I   + H         ++ +  + G +++
Sbjct: 515 ITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHY------ACMIDLLGRAGLLEE 568

Query: 408 AEAVFKGSALR-DTASWNMMIGGYVKH---GLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           A    +   +  D  +W  ++     H    L + A E   +++D       +     LS
Sbjct: 569 AYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKL-LLIDPNNSGAYLALANTLS 627

Query: 464 ACSHMGLIEEGKKHFSSIK 482
           AC   G  E+  K   S+K
Sbjct: 628 AC---GKWEDAAKVRKSMK 643



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 118/488 (24%), Positives = 202/488 (41%), Gaps = 102/488 (20%)

Query: 158 LVRATTETGDQRCGESIHAVICKYGFES-DTLVGNALVSMYMENGRVSYGSRVFEAIAHQ 216
           L+++  ++ D   G  IHA I K+G       + N L+++Y++ G  S   R+F+ +  +
Sbjct: 18  LLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLK 77

Query: 217 DSVSWNALFSR-------------FQDYESPD------------------QGLRIFYQML 245
            + SWN + S              F +   PD                    +  F +M+
Sbjct: 78  TTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMV 137

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG--- 302
             G  P   TF  +L +C++   +  GK++H+  +K    G   V  SL++MY K G   
Sbjct: 138 SSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSV 197

Query: 303 ---------------------------CLEDAGVA-FDSLANKDLFAYTAIITSYAQAGE 334
                                      C  D  +A FD + + D+ ++ +IIT Y   G 
Sbjct: 198 MAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGY 257

Query: 335 AEMALKCFRKM-RLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST 393
              AL+ F  M +   +K ++FTL S L+ C+   +L  G+ +H+  V+    +   V  
Sbjct: 258 DIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGN 317

Query: 394 ALVAMYAKCGS---------------------------------IDDAEAVFKGSALRDT 420
           AL++MYAK G+                                 ID A A+F     RD 
Sbjct: 318 ALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDV 377

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            +W  MI GY ++GL   AL  FR+M+ EG  P+  T   VLS  S +  ++ GK+  + 
Sbjct: 378 VAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAV 437

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG--- 537
             ++  ++ ++     +I +  R+G   +            + L W +++ + + HG   
Sbjct: 438 AIRLEEVS-SVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGN 496

Query: 538 -NIELDEK 544
             IEL EK
Sbjct: 497 EAIELFEK 504


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 172/516 (33%), Positives = 290/516 (56%), Gaps = 9/516 (1%)

Query: 91  SLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKP 150
           +L+  Y+K  L   A  +F +I  PD+V++  +I     +G    A  +F  MRE  +  
Sbjct: 79  ALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLVM 138

Query: 151 NQFVLTSLVRAT-TETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRV 209
           + F  + ++ A     G  R    +H++    GF+S   V N+L++ Y +NG +     V
Sbjct: 139 DGFTFSGVITACCNHVGLIR---QLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMV 195

Query: 210 FEAIAHQ--DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLS 267
           F  +  +  D VSWN++   +  ++   + L ++  M+ +GF+ +M T   +L   S + 
Sbjct: 196 FNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVE 255

Query: 268 DVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC-LEDAGVAFDSLANKDLFAYTAII 326
           D+  G Q HA  IK   + N  VG+ L+DMY K G  + ++   F+ +   DL  +  +I
Sbjct: 256 DLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMI 315

Query: 327 TSYAQAGEAEM-ALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH 385
           + Y+Q  E  + AL+CFR+M+  G   ++ +    ++ CS +++ + G+  H++A+K+  
Sbjct: 316 SGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEI 375

Query: 386 LLDMF-VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
             +   V+ ALV MY+KCG++ DA  +F+     +T + N +I GY +HG+G ++L  F 
Sbjct: 376 PSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFE 435

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA 504
            ML     P  IT V +LSAC+H G +EEGKK+F+ +K I+GI P  +H++CMID+LGRA
Sbjct: 436 QMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRA 495

Query: 505 GKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564
           GK +E E  I     +P +  W  LLGAC  +GN+EL EK A + L+LEP     Y+  +
Sbjct: 496 GKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEPTNAVPYIMLA 555

Query: 565 DISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
            + +   +W + + +R L+  +GI+K+P CSWIE++
Sbjct: 556 SMYSAARKWEEAARIRKLMRDRGIRKKPGCSWIELN 591



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 135/472 (28%), Positives = 220/472 (46%), Gaps = 30/472 (6%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + +A  +F  +P+ ++VS+N L+N YA+ GD    + LF  M++M      F+ S V+  
Sbjct: 90  IHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLVMDGFTFSGVITA 149

Query: 61  FANS-GYIKAGQVVHAMAIRLGCALDKFLSC--SLVDMYSKCGLADNALKVFYRIKDP-- 115
             N  G I+    +H++A   G   D ++S   SL+  YSK G+ + A  VF  + +   
Sbjct: 150 CCNHVGLIRQ---LHSLAFSSG--FDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVR 204

Query: 116 DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH 175
           D V+W ++I    Q     +A  ++  M     + + F L S++   +   D   G   H
Sbjct: 205 DEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFH 264

Query: 176 AVICKYGFESDTLVGNALVSMYMENGR-VSYGSRVFEAIAHQDSVSWNALFSRF-QDYES 233
           A   K GF  +  VG+ L+ MY + G  +S   +VFE I   D V WN + S + Q+ E 
Sbjct: 265 AKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKEL 324

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGT 292
             + L  F QM   G+ P+ C+F+  + ACS+LS    GKQ HA  +K  +  N + V  
Sbjct: 325 SVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNN 384

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           +LV MY K G L+DA   F  +   +     +II  YAQ G    +L  F +M    I  
Sbjct: 385 ALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAP 444

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF-------VSTALVAMYAKCGSI 405
              TL S L+ C+    +  G+   ++      + D+F         + ++ +  + G +
Sbjct: 445 TSITLVSILSACAHTGRVEEGKKYFNM------MKDIFGIEPEAEHYSCMIDLLGRAGKL 498

Query: 406 DDAEAVFKGSALRD-TASWNMMIGGYVKHG---LGEKALEAFRMMLDEGYVP 453
            +AE +         +A+W  ++G   K+G   L EKA   F  +     VP
Sbjct: 499 SEAERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEPTNAVP 550



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/297 (32%), Positives = 151/297 (50%), Gaps = 6/297 (2%)

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E +    NAL++ Y +   +     +F+ I   D VS+N L + + D       L +F +
Sbjct: 71  EPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGE 130

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G   +  TF  ++ AC   + VG  +QLH+       D    V  SL+  Y K+G 
Sbjct: 131 MREMGLVMDGFTFSGVITACC--NHVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGI 188

Query: 304 LEDAGVAFDSLAN--KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           LE+A + F+ +    +D  ++ ++I +Y Q      AL  +R M   G + + FTLAS L
Sbjct: 189 LEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVL 248

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS-IDDAEAVFKGSALRDT 420
              S V  L+ G   H+ A+KTG   +  V + L+ MYAKCG+ + ++  VF+     D 
Sbjct: 249 TTFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDL 308

Query: 421 ASWNMMIGGYVKHG-LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
             WN MI GY ++  L  +ALE FR M   GY PD+ +FV  +SACS++    +GK+
Sbjct: 309 VVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQ 365



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 146/353 (41%), Gaps = 44/353 (12%)

Query: 249 FKPNMCTFIVILKACSSLSDVGFGKQLHA------------------------------- 277
           F   + +F  ILK+C +  D+  GK LH                                
Sbjct: 4   FSWTLQSFRQILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAH 63

Query: 278 HTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEM 337
           H    + + N     +L+  Y K   +  A   FD +   DL ++  +I +YA  G+   
Sbjct: 64  HAFNQTHEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLS 123

Query: 338 ALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVA 397
           AL  F +MR  G+  + FT +  +  C     L   R LHS+A  +G    + V  +L+ 
Sbjct: 124 ALSLFGEMREMGLVMDGFTFSGVITACCNHVGLI--RQLHSLAFSSGFDSYVSVKNSLLT 181

Query: 398 MYAKCGSIDDAEAVFK--GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE 455
            Y+K G +++AE VF   G  +RD  SWN MI  Y +H  G KAL  +R M+  G+  D 
Sbjct: 182 YYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDM 241

Query: 456 ITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFI 514
            T   VL+  S +  +  G + H  +IK   G        + +ID+  + G        +
Sbjct: 242 FTLASVLTTFSCVEDLSGGLQFHAKAIKT--GFNKNRHVGSGLIDMYAKCGAGMSESRKV 299

Query: 515 TETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            E     + +VW  ++   S +  + ++       LE   +M+    +P D S
Sbjct: 300 FEEICGSDLVVWNTMISGYSQNKELSVEA------LECFRQMQRAGYWPDDCS 346


>gi|302773754|ref|XP_002970294.1| hypothetical protein SELMODRAFT_93439 [Selaginella moellendorffii]
 gi|300161810|gb|EFJ28424.1| hypothetical protein SELMODRAFT_93439 [Selaginella moellendorffii]
          Length = 1096

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 184/604 (30%), Positives = 319/604 (52%), Gaps = 17/604 (2%)

Query: 4   AKRVFKSM-PELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           A+ VF+++    NVVSW  ++  YA+ G  +    L+   K M+ + +  +   V+    
Sbjct: 383 ARDVFENLGSSRNVVSWTVMIWAYAQQGFIRAAFDLY---KRMDCEPNAVTFMAVMDSCL 439

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
               +   + +HA  +  G   D  L   LV MY KCG  D+A  +F  +K+  VVAW +
Sbjct: 440 RPEDLPRAEQIHAHMVASGFESDVVLQVCLVTMYGKCGSVDSAWSIFENLKERSVVAWNS 499

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +++     GC + + K++  M     KP++    +++ A     + R           + 
Sbjct: 500 MLSAFASNGCYERSLKLYERMLLEGTKPDKITYLAVLDACQSVSEAR------RYAATFE 553

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALFSRFQDYESPDQGLRIF 241
            E D    NA VS Y   G +      F+AI    ++V+WNA+ S    +    Q L  F
Sbjct: 554 LELDIAARNAAVSAYARCGSLKEAKAAFDAIQWKNNAVTWNAMISGLAQHGESKQALECF 613

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
           ++M L+G + N  T++  L+ACSSL D+  G+QLHA  +  ++   ++   ++++MY K 
Sbjct: 614 WKMELEGVRANSVTYLASLEACSSLKDLTRGRQLHARILLENIHEANL-SNAVINMYGKC 672

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G L++A   F  +  +D+ ++  +I +YAQ G    AL+ F++M LEG   +  T    +
Sbjct: 673 GSLDEAMDEFVKMPERDVISWNTMIATYAQHGSGRQALEFFKQMDLEGWTPDRATYLGAI 732

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLL--DMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
           + C  V +LA G+ +HSI       L  D  V+TALV MYA+CGS+ DA++VF  S  R+
Sbjct: 733 DACGSVPSLALGKTIHSIVATAAPCLEQDPGVATALVTMYARCGSLHDAKSVFWRSHSRN 792

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE-GKKHF 478
             +W+ +I    +HG   +AL+ FR M  +G  PD +TF  +++ACS  G++++ G++ F
Sbjct: 793 LVTWSNLIAACAQHGRENEALDLFREMQLQGTKPDALTFSTLVAACSRRGVVKDGGRRIF 852

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            ++ ++Y ++ + +H+ CM+++LGRAGK  E E  I       +  +W  LL AC+  G+
Sbjct: 853 DALGRVYPVSASAEHYGCMVEVLGRAGKLEEAEGLIQGMPRKASGAIWMALLAACNRRGD 912

Query: 539 IELDEKDAEKLLELEP-KMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSC-SW 596
           +E   + A +  +L+P    ++    +++    GRW D + VR  + S+  ++EP   SW
Sbjct: 913 LERGIRAANRAQQLDPGSFAASMAMLAELYGAAGRWEDAARVRKAVESRNARREPGGRSW 972

Query: 597 IEVD 600
           IEV+
Sbjct: 973 IEVN 976



 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 164/572 (28%), Positives = 290/572 (50%), Gaps = 26/572 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  VF+ +P  NV SW AL+  YA+ G  ++V+  F  M+    K   F  STVL  
Sbjct: 77  LQDAVEVFELLPCPNVFSWTALITAYAKEGHLREVLGFFRKMQLDGTKPDAFVFSTVLTA 136

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +++G +  G+ +H   +  G    + +  ++V++Y KCG    A  VF R+ + ++V+W
Sbjct: 137 CSSAGALNEGKAIHDCVVLAGME-TQVVGNAIVNLYGKCGRVHEAKAVFERLPERNLVSW 195

Query: 121 GAIITCLDQQGCCQEAAKIFNLMR-ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            A+I    Q G C++A ++F LM  + SV+PN     S+V A +   D   G+S H  I 
Sbjct: 196 NALIAANAQNGHCKDAMQVFQLMDLDGSVRPNDATFVSVVDACSNLLDLPRGKSTHERII 255

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS---WNALFSRFQDYESPDQ 236
           + GF+S   VGN+LV+MY + G V +   VFE +  +D +S   W  + + F       +
Sbjct: 256 RTGFDSYLFVGNSLVNMYGKCGSVDHARLVFEKMRLRDVLSVYSWTVIIAAFAHNGHLLE 315

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
              +FY+M L+G  PN  TF+ +L+AC++L+     +++ A      L+ +  +GT+ V 
Sbjct: 316 AFVLFYKMDLEGVLPNKVTFVTVLRACTTLAQC---EKIFARVKHLGLELDTTLGTAFVS 372

Query: 297 MYDKSGCLEDAGVAFDSL-ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
            + K G L  A   F++L +++++ ++T +I +YAQ G    A   +++M  E    N  
Sbjct: 373 TFAKLGDLAAARDVFENLGSSRNVVSWTVMIWAYAQQGFIRAAFDLYKRMDCE---PNAV 429

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
           T  + ++ C     L     +H+  V +G   D+ +   LV MY KCGS+D A ++F+  
Sbjct: 430 TFMAVMDSCLRPEDLPRAEQIHAHMVASGFESDVVLQVCLVTMYGKCGSVDSAWSIFENL 489

Query: 416 ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
             R   +WN M+  +  +G  E++L+ +  ML EG  PD+IT++ VL AC     + E +
Sbjct: 490 KERSVVAWNSMLSAFASNGCYERSLKLYERMLLEGTKPDKITYLAVLDACQS---VSEAR 546

Query: 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
           ++ ++    + +   I      +    R G   E +      +   NA+ W  ++   + 
Sbjct: 547 RYAAT----FELELDIAARNAAVSAYARCGSLKEAKAAFDAIQWKNNAVTWNAMISGLAQ 602

Query: 536 HGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           HG       ++++ LE   KME   V  + ++
Sbjct: 603 HG-------ESKQALECFWKMELEGVRANSVT 627



 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 151/518 (29%), Positives = 259/518 (50%), Gaps = 22/518 (4%)

Query: 42  MKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGL 101
           +K   +       +++L+  A      AG++VH   +  GC ++++L   L+ MY+KCG 
Sbjct: 17  LKKSSESLQPARYASLLQKCAEQKSAAAGKLVHQHILSSGCGVNRYLQNHLIFMYAKCGC 76

Query: 102 ADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRA 161
             +A++VF  +  P+V +W A+IT   ++G  +E    F  M+    KP+ FV ++++ A
Sbjct: 77  LQDAVEVFELLPCPNVFSWTALITAYAKEGHLREVLGFFRKMQLDGTKPDAFVFSTVLTA 136

Query: 162 TTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSW 221
            +  G    G++IH  +   G E+  +VGNA+V++Y + GRV     VFE +  ++ VSW
Sbjct: 137 CSSAGALNEGKAIHDCVVLAGMETQ-VVGNAIVNLYGKCGRVHEAKAVFERLPERNLVSW 195

Query: 222 NALFSRFQDYESPDQGLRIFYQMLLKG-FKPNMCTFIVILKACSSLSDVGFGKQLHAHTI 280
           NAL +           +++F  M L G  +PN  TF+ ++ ACS+L D+  GK  H   I
Sbjct: 196 NALIAANAQNGHCKDAMQVFQLMDLDGSVRPNDATFVSVVDACSNLLDLPRGKSTHERII 255

Query: 281 KHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKD---LFAYTAIITSYAQAGEAEM 337
           +   D    VG SLV+MY K G ++ A + F+ +  +D   ++++T II ++A  G    
Sbjct: 256 RTGFDSYLFVGNSLVNMYGKCGSVDHARLVFEKMRLRDVLSVYSWTVIIAAFAHNGHLLE 315

Query: 338 ALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVA 397
           A   F KM LEG+  N+ T  + L  C+   TLA    + +     G  LD  + TA V+
Sbjct: 316 AFVLFYKMDLEGVLPNKVTFVTVLRACT---TLAQCEKIFARVKHLGLELDTTLGTAFVS 372

Query: 398 MYAKCGSIDDAEAVFK--GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE 455
            +AK G +  A  VF+  GS+ R+  SW +MI  Y + G    A + ++ M  E   P+ 
Sbjct: 373 TFAKLGDLAAARDVFENLGSS-RNVVSWTVMIWAYAQQGFIRAAFDLYKRMDCE---PNA 428

Query: 456 ITFVVVLSAC---SHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIEN 512
           +TF+ V+ +C     +   E+   H  +     G    +    C++ + G+ G      +
Sbjct: 429 VTFMAVMDSCLRPEDLPRAEQIHAHMVA----SGFESDVVLQVCLVTMYGKCGSVDSAWS 484

Query: 513 FITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLL 550
                K   + + W ++L A + +G  E   K  E++L
Sbjct: 485 IFENLK-ERSVVAWNSMLSAFASNGCYERSLKLYERML 521



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 117/412 (28%), Positives = 199/412 (48%), Gaps = 12/412 (2%)

Query: 147 SVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYG 206
           S++P ++   SL++   E      G+ +H  I   G   +  + N L+ MY + G +   
Sbjct: 23  SLQPARY--ASLLQKCAEQKSAAAGKLVHQHILSSGCGVNRYLQNHLIFMYAKCGCLQDA 80

Query: 207 SRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266
             VFE +   +  SW AL + +       + L  F +M L G KP+   F  +L ACSS 
Sbjct: 81  VEVFELLPCPNVFSWTALITAYAKEGHLREVLGFFRKMQLDGTKPDAFVFSTVLTACSSA 140

Query: 267 SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
             +  GK +H   +   ++   VVG ++V++Y K G + +A   F+ L  ++L ++ A+I
Sbjct: 141 GALNEGKAIHDCVVLAGME-TQVVGNAIVNLYGKCGRVHEAKAVFERLPERNLVSWNALI 199

Query: 327 TSYAQAGEAEMALKCFRKMRLEG-IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH 385
            + AQ G  + A++ F+ M L+G ++ N+ T  S ++ CS +  L  G+  H   ++TG 
Sbjct: 200 AANAQNGHCKDAMQVFQLMDLDGSVRPNDATFVSVVDACSNLLDLPRGKSTHERIIRTGF 259

Query: 386 LLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA---SWNMMIGGYVKHGLGEKALEA 442
              +FV  +LV MY KCGS+D A  VF+   LRD     SW ++I  +  +G   +A   
Sbjct: 260 DSYLFVGNSLVNMYGKCGSVDHARLVFEKMRLRDVLSVYSWTVIIAAFAHNGHLLEAFVL 319

Query: 443 FRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILG 502
           F  M  EG +P+++TFV VL AC+ +   E   K F+ +K + G+          +    
Sbjct: 320 FYKMDLEGVLPNKVTFVTVLRACTTLAQCE---KIFARVKHL-GLELDTTLGTAFVSTFA 375

Query: 503 RAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEP 554
           + G      +       + N + W  ++ A +  G I     D  K ++ EP
Sbjct: 376 KLGDLAAARDVFENLGSSRNVVSWTVMIWAYAQQGFIRA-AFDLYKRMDCEP 426


>gi|18409250|ref|NP_564961.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75168871|sp|Q9C507.1|PP111_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial; Flags: Precursor
 gi|12325094|gb|AAG52503.1|AC018364_21 hypothetical protein; 27026-24663 [Arabidopsis thaliana]
 gi|12597785|gb|AAG60097.1|AC073178_8 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332196793|gb|AEE34914.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 787

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 190/601 (31%), Positives = 325/601 (54%), Gaps = 10/601 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF  MP  ++V+W+ L++   E+G+  K + +F  M D   +    ++ +V++G A 
Sbjct: 155 AEKVFDGMPVRDLVAWSTLVSSCLENGEVVKALRMFKCMVDDGVEPDAVTMISVVEGCAE 214

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G ++  + VH    R    LD+ L  SL+ MYSKCG   ++ ++F +I   + V+W A+
Sbjct: 215 LGCLRIARSVHGQITRKMFDLDETLCNSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAM 274

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY-- 181
           I+  ++    ++A + F+ M +S ++PN   L S++ +    G  R G+S+H    +   
Sbjct: 275 ISSYNRGEFSEKALRSFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKSVHGFAVRREL 334

Query: 182 --GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
              +ES +L   ALV +Y E G++S    V   ++ ++ V+WN+L S +       Q L 
Sbjct: 335 DPNYESLSL---ALVELYAECGKLSDCETVLRVVSDRNIVAWNSLISLYAHRGMVIQALG 391

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F QM+ +  KP+  T    + AC +   V  GKQ+H H I+  +  +  V  SL+DMY 
Sbjct: 392 LFRQMVTQRIKPDAFTLASSISACENAGLVPLGKQIHGHVIRTDV-SDEFVQNSLIDMYS 450

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           KSG ++ A   F+ + ++ +  + +++  ++Q G +  A+  F  M    ++ NE T  +
Sbjct: 451 KSGSVDSASTVFNQIKHRSVVTWNSMLCGFSQNGNSVEAISLFDYMYHSYLEMNEVTFLA 510

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            +  CS + +L  G+ +H   + +G L D+F  TAL+ MYAKCG ++ AE VF+  + R 
Sbjct: 511 VIQACSSIGSLEKGKWVHHKLIISG-LKDLFTDTALIDMYAKCGDLNAAETVFRAMSSRS 569

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SW+ MI  Y  HG    A+  F  M++ G  P+E+ F+ VLSAC H G +EEGK +F+
Sbjct: 570 IVSWSSMINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSACGHSGSVEEGKYYFN 629

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
            +K  +G++P  +HFAC ID+L R+G   E    I E     +A VW +L+  C  H  +
Sbjct: 630 LMKS-FGVSPNSEHFACFIDLLSRSGDLKEAYRTIKEMPFLADASVWGSLVNGCRIHQKM 688

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           ++ +     L ++       Y   S+I A +G W +F  +R+ + S  +KK P  S IE+
Sbjct: 689 DIIKAIKNDLSDIVTDDTGYYTLLSNIYAEEGEWEEFRRLRSAMKSSNLKKVPGYSAIEI 748

Query: 600 D 600
           D
Sbjct: 749 D 749



 Score =  248 bits (633), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 161/571 (28%), Positives = 281/571 (49%), Gaps = 35/571 (6%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           ++ VF++ P  +   +  L+            + L+  +     + SKF   +VL+  A 
Sbjct: 53  SRLVFEAFPYPDSFMYGVLIKCNVWCHLLDAAIDLYHRLVSETTQISKFVFPSVLRACAG 112

Query: 64  SG-YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           S  ++  G  VH   I+ G   D  +  SL+ MY + G   +A KVF  +   D+VAW  
Sbjct: 113 SREHLSVGGKVHGRIIKGGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWST 172

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +++   + G   +A ++F  M +  V+P+   + S+V    E G  R   S+H  I +  
Sbjct: 173 LVSSCLENGEVVKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKM 232

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F+ D  + N+L++MY + G +    R+FE IA +++VSW A+ S +   E  ++ LR F 
Sbjct: 233 FDLDETLCNSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFS 292

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH-VVGTSLVDMYDKS 301
           +M+  G +PN+ T   +L +C  +  +  GK +H   ++  LD N+  +  +LV++Y + 
Sbjct: 293 EMIKSGIEPNLVTLYSVLSSCGLIGLIREGKSVHGFAVRRELDPNYESLSLALVELYAEC 352

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G L D       ++++++ A+ ++I+ YA  G    AL  FR+M  + IK + FTLAS +
Sbjct: 353 GKLSDCETVLRVVSDRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSI 412

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           + C     +  G+ +H   ++T  + D FV  +L+ MY+K GS+D A  VF     R   
Sbjct: 413 SACENAGLVPLGKQIHGHVIRT-DVSDEFVQNSLIDMYSKSGSVDSASTVFNQIKHRSVV 471

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK--KH-- 477
           +WN M+ G+ ++G   +A+  F  M       +E+TF+ V+ ACS +G +E+GK   H  
Sbjct: 472 TWNSMLCGFSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKL 531

Query: 478 -FSSIKKIYGITPTIKHFA------------------------CMID---ILGRAGKFTE 509
             S +K ++  T  I  +A                         MI+   + GR G    
Sbjct: 532 IISGLKDLFTDTALIDMYAKCGDLNAAETVFRAMSSRSIVSWSSMINAYGMHGRIGSAIS 591

Query: 510 IENFITETKLTPNALVWENLLGACSWHGNIE 540
             N + E+   PN +V+ N+L AC   G++E
Sbjct: 592 TFNQMVESGTKPNEVVFMNVLSACGHSGSVE 622



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 125/460 (27%), Positives = 223/460 (48%), Gaps = 13/460 (2%)

Query: 85  DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMR 144
           D      L++ Y+  G  D++  VF     PD   +G +I C         A  +++ + 
Sbjct: 33  DPLPVTKLIESYAFMGSPDSSRLVFEAFPYPDSFMYGVLIKCNVWCHLLDAAIDLYHRLV 92

Query: 145 ESSVKPNQFVLTSLVRATTETGDQ-RCGESIHAVICKYGFESDTLVGNALVSMYMENGRV 203
             + + ++FV  S++RA   + +    G  +H  I K G + D ++  +L+ MY + G +
Sbjct: 93  SETTQISKFVFPSVLRACAGSREHLSVGGKVHGRIIKGGVDDDAVIETSLLCMYGQTGNL 152

Query: 204 SYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKAC 263
           S   +VF+ +  +D V+W+ L S   +     + LR+F  M+  G +P+  T I +++ C
Sbjct: 153 SDAEKVFDGMPVRDLVAWSTLVSSCLENGEVVKALRMFKCMVDDGVEPDAVTMISVVEGC 212

Query: 264 SSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYT 323
           + L  +   + +H    +   D +  +  SL+ MY K G L  +   F+ +A K+  ++T
Sbjct: 213 AELGCLRIARSVHGQITRKMFDLDETLCNSLLTMYSKCGDLLSSERIFEKIAKKNAVSWT 272

Query: 324 AIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKT 383
           A+I+SY +   +E AL+ F +M   GI+ N  TL S L+ C  +  +  G+ +H  AV+ 
Sbjct: 273 AMISSYNRGEFSEKALRSFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKSVHGFAVRR 332

Query: 384 GHLLDM---FVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKAL 440
              LD     +S ALV +YA+CG + D E V +  + R+  +WN +I  Y   G+  +AL
Sbjct: 333 E--LDPNYESLSLALVELYAECGKLSDCETVLRVVSDRNIVAWNSLISLYAHRGMVIQAL 390

Query: 441 EAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFA--CMI 498
             FR M+ +   PD  T    +SAC + GL+  GK+    + +    T     F    +I
Sbjct: 391 GLFRQMVTQRIKPDAFTLASSISACENAGLVPLGKQIHGHVIR----TDVSDEFVQNSLI 446

Query: 499 DILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           D+  ++G          + K   + + W ++L   S +GN
Sbjct: 447 DMYSKSGSVDSASTVFNQIK-HRSVVTWNSMLCGFSQNGN 485



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 184/375 (49%), Gaps = 7/375 (1%)

Query: 169 RCGESIHAVICKYG-FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR 227
           R    +HA +   G    D L    L+  Y   G       VFEA  + DS  +  L   
Sbjct: 15  RLVSQLHAHLLVTGRLRRDPLPVTKLIESYAFMGSPDSSRLVFEAFPYPDSFMYGVLIKC 74

Query: 228 FQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACS-SLSDVGFGKQLHAHTIKHSLDG 286
                  D  + ++++++ +  + +   F  +L+AC+ S   +  G ++H   IK  +D 
Sbjct: 75  NVWCHLLDAAIDLYHRLVSETTQISKFVFPSVLRACAGSREHLSVGGKVHGRIIKGGVDD 134

Query: 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR 346
           + V+ TSL+ MY ++G L DA   FD +  +DL A++ +++S  + GE   AL+ F+ M 
Sbjct: 135 DAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLENGEVVKALRMFKCMV 194

Query: 347 LEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSID 406
            +G++ +  T+ S + GC+ +  L   R +H    +    LD  +  +L+ MY+KCG + 
Sbjct: 195 DDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDLDETLCNSLLTMYSKCGDLL 254

Query: 407 DAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
            +E +F+  A ++  SW  MI  Y +    EKAL +F  M+  G  P+ +T   VLS+C 
Sbjct: 255 SSERIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMIKSGIEPNLVTLYSVLSSCG 314

Query: 467 HMGLIEEGKK-HFSSIKKIYGITPTIKHFA-CMIDILGRAGKFTEIENFITETKLTPNAL 524
            +GLI EGK  H  ++++   + P  +  +  ++++    GK ++ E  +       N +
Sbjct: 315 LIGLIREGKSVHGFAVRR--ELDPNYESLSLALVELYAECGKLSDCETVLRVVS-DRNIV 371

Query: 525 VWENLLGACSWHGNI 539
            W +L+   +  G +
Sbjct: 372 AWNSLISLYAHRGMV 386


>gi|147836314|emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera]
          Length = 768

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 195/645 (30%), Positives = 332/645 (51%), Gaps = 64/645 (9%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +++A+++F  MP+  VVSWN +++ Y++ G   + + L  SM     K S+ + S+VL  
Sbjct: 88  LDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMHRSHMKLSESTFSSVLSV 147

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKC--------------------- 99
            A    ++ G+++H + ++ G    + +  +L+  Y+ C                     
Sbjct: 148 CARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIGEARRVFDVLVRRNEVLW 207

Query: 100 ----------GLADNALKVFYRIKDPDVVAWGAIITCLDQQG-CCQEAAKIFNLM-RESS 147
                      + D+AL VF ++   DVVAW  +I+   + G  C +A ++F LM R   
Sbjct: 208 SLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKALEMFRLMMRSGE 267

Query: 148 VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGS 207
             PN+F    +VRA    G    G ++H ++ K G E D  +G ALV  Y E   +    
Sbjct: 268 TTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDAL 327

Query: 208 RVFEAIAHQDSVSWNALFS------RFQDYESPDQGLR----IFYQMLLKGFKPNMCTFI 257
           RV + + +    + N+L        R +D E    G+     + Y +++KG+        
Sbjct: 328 RVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMTEMNPVSYNLMIKGYAVG----- 382

Query: 258 VILKACSSLSDVG-FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
                   + D     +++   TI  S         +++ +Y ++G ++ A   F+   N
Sbjct: 383 ------GQMDDSKRLFEKMPCRTIFSS--------NTMISVYSRNGEIDKALELFEETKN 428

Query: 317 -KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRL 375
            KD   + ++I+ Y  +G+ E ALK +  M    I+    T ++  + CS + +L  G+L
Sbjct: 429 EKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTRSTFSALFHACSCLGSLQQGQL 488

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           LH+  +KT    +++V T+L+ MY+KCGSI +A+  F      + A+W  +I G+  HGL
Sbjct: 489 LHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTALINGHAYHGL 548

Query: 436 GEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFA 495
           G +A+  F  M+++G  P+  TFV VLSACS  GL+ EG K F S+++ Y +TPT++H+A
Sbjct: 549 GSEAISLFDXMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSMERCYSVTPTLEHYA 608

Query: 496 CMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPK 555
           C++D+LGR+G   E E FI +  L  + +VW  LL AC +  ++E+ E+ AEK+   +PK
Sbjct: 609 CVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSACWFWMDLEVGERVAEKMFSFDPK 668

Query: 556 MESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
             S+YV  S+I A  GRW +   VR +L    +KK+P CSWIE++
Sbjct: 669 PISSYVILSNIYAGLGRWREKMMVRKILRGFKVKKDPGCSWIELN 713



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 113/481 (23%), Positives = 204/481 (42%), Gaps = 48/481 (9%)

Query: 93  VDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQ 152
           +  Y+K    D A ++F ++    VV+W  +I+   + G   EA  +   M  S +K ++
Sbjct: 79  ISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMHRSHMKLSE 138

Query: 153 FVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEA 212
              +S++         R G+ IH ++ K G ES  LVG+AL+  Y     +    RVF+ 
Sbjct: 139 STFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIGEARRVFDV 198

Query: 213 IAHQDSVSWNALFSRFQDYESPDQGLRIFYQM----------LLKGFK------------ 250
           +  ++ V W+ +   +      D  L +F +M          L+ GF             
Sbjct: 199 LVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKALEM 258

Query: 251 -----------PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
                      PN  TF  +++AC  L  +  G+ +H   +K  L+ +  +G +LV+ Y 
Sbjct: 259 FRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYC 318

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           +   ++DA      + N  L A  ++I      G  E A   F  M     + N  +   
Sbjct: 319 ECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGM----TEMNPVSYNL 374

Query: 360 CLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA-L 417
            + G +    + +  RL   +  +T     +F S  ++++Y++ G ID A  +F+ +   
Sbjct: 375 MIKGYAVGGQMDDSKRLFEKMPCRT-----IFSSNTMISVYSRNGEIDKALELFEETKNE 429

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK-K 476
           +D  +WN MI GY+  G  E+AL+ +  M          TF  +  ACS +G +++G+  
Sbjct: 430 KDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTRSTFSALFHACSCLGSLQQGQLL 489

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
           H   IK  +     +     +ID+  + G   E +        +PN   W  L+   ++H
Sbjct: 490 HAHLIKTPFESNVYVG--TSLIDMYSKCGSIMEAQTSFVSI-FSPNVAAWTALINGHAYH 546

Query: 537 G 537
           G
Sbjct: 547 G 547



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 108/228 (47%), Gaps = 34/228 (14%)

Query: 282 HSLDGNHVVGTSL-VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALK 340
           H  + + ++ T++ +  Y K   L+ A   FD +  + + ++  +I+SY++ G    AL 
Sbjct: 65  HQSNLSEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALF 124

Query: 341 CFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYA 400
               M    +K +E T +S L+ C+ +  L +G+L+H + +K+G      V +AL+  YA
Sbjct: 125 LVYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYA 184

Query: 401 KCGSIDDAEAVFKGSALRDTASWNMMIGGYV----------------------------- 431
            C  I +A  VF     R+   W++M+ GYV                             
Sbjct: 185 SCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISG 244

Query: 432 --KHGLG-EKALEAFRMMLDEG-YVPDEITFVVVLSACSHMGLIEEGK 475
             K+G G  KALE FR+M+  G   P+E TF  V+ AC  +G++  G+
Sbjct: 245 FSKNGDGCGKALEMFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGR 292


>gi|297830924|ref|XP_002883344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329184|gb|EFH59603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 824

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 202/612 (33%), Positives = 324/612 (52%), Gaps = 17/612 (2%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           ++ ++VF +M   NVV+WN L++ Y ++G   +    F  M  ME K S  S   V    
Sbjct: 169 DVVRKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFAIMMRMEIKPSPVSFVNVFPAV 228

Query: 62  ANSGYIKAGQVVHAMAIRLG--CALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           A S  IK   V + + ++LG     D F+  S + MY++ G  +++ +VF    + ++  
Sbjct: 229 ATSRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDLESSRRVFDSCVERNIEV 288

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFV---LTSLVRATTETGDQRC--GESI 174
           W  +I    Q  C  E+ ++F      ++   + V   +T L+ A+  +G Q+   G   
Sbjct: 289 WNTMIGVYVQNDCLVESIELF----LEAIGSKEIVSDEVTFLLAASAVSGLQQVELGRQF 344

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H  + K   E   ++ N+L+ MY   G V     VF ++  +D VSWN + S F      
Sbjct: 345 HGFVSKNFRELPIVIINSLMVMYSRCGFVQKSFGVFHSMRERDVVSWNTMISAFVQNGLD 404

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
           D+GL + Y+M  +GFK +  T   +L A S+L +   GKQ H   I+  +    +  + L
Sbjct: 405 DEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHGFLIRQGIQFEGM-NSYL 463

Query: 295 VDMYDKSGCLEDAGVAFDS--LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           +DMY KSG +  +   F+    A +D   + ++I+ Y Q G  E     FRKM  + I+ 
Sbjct: 464 IDMYAKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEETFLVFRKMLEQNIRP 523

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
           N  T+AS L  CS V ++  G+ LH  +++     ++FV++ALV MY+K G+I  AE +F
Sbjct: 524 NAVTVASILPACSQVGSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAENMF 583

Query: 413 KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE 472
             +  R++ ++  MI GY +HG+GE+A+  F  M + G  PD I FV VLSACS+ GL++
Sbjct: 584 SQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQELGIKPDAIAFVAVLSACSYSGLVD 643

Query: 473 EGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPN-ALVWENLLG 531
           EG K F  ++++Y I P+ +H+ C+ D+LGR G+  E   F+       N A +W +LLG
Sbjct: 644 EGLKIFEDMREVYNIQPSSEHYCCITDMLGRVGRVNEAYEFVKGLGEEGNIAELWGSLLG 703

Query: 532 ACSWHGNIELDEKDAEKLLELEP-KMESNY-VFPSDISATQGRWNDFSGVRALLSSQGIK 589
           +C  HG +EL E  +E+L +L+  K  S Y V  S++ A +  W     VR  +  +G+K
Sbjct: 704 SCRLHGELELAETVSERLAKLDKGKNFSGYEVLLSNMYAEEQNWKSVDRVRKGMREKGLK 763

Query: 590 KEPSCSWIEVDG 601
           KE   S IEV G
Sbjct: 764 KEVGRSGIEVAG 775



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 155/629 (24%), Positives = 294/629 (46%), Gaps = 59/629 (9%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK--KFSKFSLSTVLK 59
           +LA+++F ++P+   V WN ++ G+  +    + +  +  MK      K   ++ S+ LK
Sbjct: 56  QLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTKCDAYTYSSTLK 115

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLA----------DNALKVF 109
             A +  +KAG+ VH   IR      + +  SL++MY  C  A          D   KVF
Sbjct: 116 ACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPGSELDCFEYDVVRKVF 175

Query: 110 YRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
             ++  +VVAW  +I+   + G   EA + F +M    +KP+     ++  A   +   +
Sbjct: 176 DNMRRKNVVAWNTLISWYVKTGRNAEACRQFAIMMRMEIKPSPVSFVNVFPAVATSRSIK 235

Query: 170 CGESIHAVICKYGFE--SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR 227
                + ++ K G E   D  V ++ +SMY E G +    RVF++   ++   WN +   
Sbjct: 236 KANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDLESSRRVFDSCVERNIEVWNTMIGV 295

Query: 228 FQDYESPDQGLRIFYQML-LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDG 286
           +   +   + + +F + +  K    +  TF++   A S L  V  G+Q H    K+  + 
Sbjct: 296 YVQNDCLVESIELFLEAIGSKEIVSDEVTFLLAASAVSGLQQVELGRQFHGFVSKNFREL 355

Query: 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR 346
             V+  SL+ MY + G ++ +   F S+  +D+ ++  +I+++ Q G  +  L    +M+
Sbjct: 356 PIVIINSLMVMYSRCGFVQKSFGVFHSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQ 415

Query: 347 LEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSID 406
            +G K +  T+ + L+  S +     G+  H   ++ G   +  +++ L+ MYAK G I 
Sbjct: 416 KQGFKIDYITVTALLSAASNLRNKEIGKQTHGFLIRQGIQFEG-MNSYLIDMYAKSGLIR 474

Query: 407 DAEAVFKGS--ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
            ++ +F+GS  A RD A+WN MI GY ++G  E+    FR ML++   P+ +T   +L A
Sbjct: 475 ISQKLFEGSGYAERDQATWNSMISGYTQNGHTEETFLVFRKMLEQNIRPNAVTVASILPA 534

Query: 465 CSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK----- 518
           CS +G ++ GK+ H  SI++   +   +   + ++D+  +AG     EN  ++TK     
Sbjct: 535 CSQVGSVDLGKQLHGFSIRQY--LDQNVFVASALVDMYSKAGAIKYAENMFSQTKERNSV 592

Query: 519 -----------------------------LTPNALVWENLLGACSWHGNIELDEK---DA 546
                                        + P+A+ +  +L ACS+ G ++   K   D 
Sbjct: 593 TYTTMILGYGQHGMGERAISLFLSMQELGIKPDAIAFVAVLSACSYSGLVDEGLKIFEDM 652

Query: 547 EKLLELEPKMESNYVFPSDISATQGRWND 575
            ++  ++P  E +Y   +D+    GR N+
Sbjct: 653 REVYNIQPSSE-HYCCITDMLGRVGRVNE 680



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 116/447 (25%), Positives = 208/447 (46%), Gaps = 21/447 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E ++RVF S  E N+  WN ++  Y ++    + + LF       K+     ++ +L  
Sbjct: 271 LESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIG-SKEIVSDEVTFLLAA 329

Query: 61  FANSGY--IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
            A SG   ++ G+  H    +    L   +  SL+ MYS+CG    +  VF+ +++ DVV
Sbjct: 330 SAVSGLQQVELGRQFHGFVSKNFRELPIVIINSLMVMYSRCGFVQKSFGVFHSMRERDVV 389

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +W  +I+   Q G   E   +   M++   K +   +T+L+ A +   ++  G+  H  +
Sbjct: 390 SWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHGFL 449

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFE--AIAHQDSVSWNALFSRFQDYESPDQ 236
            + G + + +  + L+ MY ++G +    ++FE    A +D  +WN++ S +      ++
Sbjct: 450 IRQGIQFEGM-NSYLIDMYAKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEE 508

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
              +F +ML +  +PN  T   IL ACS +  V  GKQLH  +I+  LD N  V ++LVD
Sbjct: 509 TFLVFRKMLEQNIRPNAVTVASILPACSQVGSVDLGKQLHGFSIRQYLDQNVFVASALVD 568

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           MY K+G ++ A   F     ++   YT +I  Y Q G  E A+  F  M+  GIK +   
Sbjct: 569 MYSKAGAIKYAENMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQELGIKPDAIA 628

Query: 357 LASCLNGCSPVATLANG-------RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
             + L+ CS    +  G       R +++I   + H         +  M  + G +++A 
Sbjct: 629 FVAVLSACSYSGLVDEGLKIFEDMREVYNIQPSSEHY------CCITDMLGRVGRVNEAY 682

Query: 410 AVFKGSALRDTAS--WNMMIGGYVKHG 434
              KG       +  W  ++G    HG
Sbjct: 683 EFVKGLGEEGNIAELWGSLLGSCRLHG 709



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/405 (23%), Positives = 181/405 (44%), Gaps = 41/405 (10%)

Query: 199 ENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMC---T 255
           + G      ++F+AI    +V WN +   F     P + L +FY  + K      C   T
Sbjct: 51  QEGNPQLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEAL-LFYSRMKKTAPFTKCDAYT 109

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV------ 309
           +   LKAC+   ++  GK +H H I+   + + VV  SL++MY    CL   G       
Sbjct: 110 YSSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMY--VSCLNAPGSELDCFE 167

Query: 310 ------AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
                  FD++  K++ A+  +I+ Y + G    A + F  M    IK +  +  +    
Sbjct: 168 YDVVRKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFAIMMRMEIKPSPVSFVNVFPA 227

Query: 364 CSPVATLANGRLLHSIAVKTG--HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
            +   ++    + + + +K G  ++ D+FV ++ ++MYA+ G ++ +  VF     R+  
Sbjct: 228 VATSRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDLESSRRVFDSCVERNIE 287

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMML-DEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            WN MIG YV++    +++E F   +  +  V DE+TF++  SA S +  +E G++    
Sbjct: 288 VWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTFLLAASAVSGLQQVELGRQFHGF 347

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + K +   P +   + M+ +  R G F +    +  +    + + W  ++ A   +G   
Sbjct: 348 VSKNFRELPIVIINSLMV-MYSRCG-FVQKSFGVFHSMRERDVVSWNTMISAFVQNG--- 402

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSS 585
           LD++    + E++                QG   D+  V ALLS+
Sbjct: 403 LDDEGLMLVYEMQ---------------KQGFKIDYITVTALLSA 432


>gi|225216963|gb|ACN85255.1| EMB2261 putative [Oryza officinalis]
          Length = 622

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 179/538 (33%), Positives = 302/538 (56%), Gaps = 7/538 (1%)

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLA-DNALKVFYRIKDPDVVAWGAIITC 126
           + G  +HA A R G   D++L+ +L+  Y +      +AL+ F  +   DVVA  +I+  
Sbjct: 51  RLGYCLHARAARAGLLADRYLANALLAFYVRLPRHLPHALRAFDDLPRRDVVAHSSILAA 110

Query: 127 LDQQGCCQEAAKIFNLM---RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
             + G  + A      M    +  V PN   L++ V+A     D++ G  +H  +   GF
Sbjct: 111 FLRAGMPRRALASLRSMLAGADDDVSPNAHALSAAVKACAVLRDRKAGACLHGSVLVRGF 170

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D +V ++LV MY          +VFE +   D + + +L S F   +  ++ +R F  
Sbjct: 171 GDDDVVLSSLVDMYGHVAAPGDARKVFEEMRAPDGICYTSLISAFVRNDWFEEAVRWFRS 230

Query: 244 MLL-KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           ML+  G +P+ CTF  ++ A  +L     G+Q HA  +   L GN +V +S +DMY K G
Sbjct: 231 MLMMNGVRPDGCTFGSMMTALGNLKRGSQGRQAHAQVVTRGLCGNVIVESSTLDMYAKCG 290

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            + +A   FD +  ++  +  A++  Y Q GE E  +  FR+M  E    + ++L + L 
Sbjct: 291 LMVEARKVFDRMQVRNEVSRCALLGGYCQNGEYEKVIALFREMDKE--DGDWYSLGTVLR 348

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+ ++++  G+ +H   ++ G   D+ V +ALV +YAKCG++D A +VF+ S +R+T +
Sbjct: 349 ACAGLSSVKPGKEIHCRFLRMGGWRDVVVESALVDLYAKCGAVDYAYSVFEASTVRNTIT 408

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN MIGG+ ++G GE+A+  F  M+ EG  PD I+F+ VL ACSH G++E+G+ +F+S+ 
Sbjct: 409 WNAMIGGFAQNGHGERAINLFNRMVREGPRPDYISFIGVLFACSHTGMVEQGRNYFNSMC 468

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           K YGI P I+H+ CM+D+L R     E E+ I ++    ++ +W  +LGA + H N ++ 
Sbjct: 469 KDYGIAPGIEHYNCMVDLLSRVELLEEAEDLINKSPFRNDSSLWAAILGASATHSNPDVA 528

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           E+ A+K++ELEP+   +Y+   ++  T GRW D   +R L+ S+ +KKEP  SWI+ +
Sbjct: 529 ERVAKKMMELEPQYHLSYILLENVYRTVGRWEDALEIRRLMESRKVKKEPGMSWIDTN 586



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 105/451 (23%), Positives = 208/451 (46%), Gaps = 8/451 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM---KDMEKKFSKFSLSTVLKG 60
           A R F  +P  +VV+ +++L  +  +G  ++ +    SM    D +   +  +LS  +K 
Sbjct: 89  ALRAFDDLPRRDVVAHSSILAAFLRAGMPRRALASLRSMLAGADDDVSPNAHALSAAVKA 148

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A     KAG  +H   +  G   D  +  SLVDMY       +A KVF  ++ PD + +
Sbjct: 149 CAVLRDRKAGACLHGSVLVRGFGDDDVVLSSLVDMYGHVAAPGDARKVFEEMRAPDGICY 208

Query: 121 GAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            ++I+   +    +EA + F +++  + V+P+     S++ A         G   HA + 
Sbjct: 209 TSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNLKRGSQGRQAHAQVV 268

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
             G   + +V ++ + MY + G +    +VF+ +  ++ VS  AL   +      ++ + 
Sbjct: 269 TRGLCGNVIVESSTLDMYAKCGLMVEARKVFDRMQVRNEVSRCALLGGYCQNGEYEKVIA 328

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F +M       +  +   +L+AC+ LS V  GK++H   ++     + VV ++LVD+Y 
Sbjct: 329 LFREM--DKEDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMGGWRDVVVESALVDLYA 386

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G ++ A   F++   ++   + A+I  +AQ G  E A+  F +M  EG + +  +   
Sbjct: 387 KCGAVDYAYSVFEASTVRNTITWNAMIGGFAQNGHGERAINLFNRMVREGPRPDYISFIG 446

Query: 360 CLNGCSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
            L  CS    +  GR   +S+    G    +     +V + ++   +++AE +   S  R
Sbjct: 447 VLFACSHTGMVEQGRNYFNSMCKDYGIAPGIEHYNCMVDLLSRVELLEEAEDLINKSPFR 506

Query: 419 -DTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
            D++ W  ++G    H   + A    + M++
Sbjct: 507 NDSSLWAAILGASATHSNPDVAERVAKKMME 537



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 63/128 (49%), Gaps = 6/128 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  VF++    N ++WNA++ G+A++G G++ ++LF  M     +    S   VL  
Sbjct: 391 VDYAYSVFEASTVRNTITWNAMIGGFAQNGHGERAINLFNRMVREGPRPDYISFIGVLFA 450

Query: 61  FANSGYIKAGQ-VVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP---D 116
            +++G ++ G+   ++M    G A        +VD+ S+  L + A  +    K P   D
Sbjct: 451 CSHTGMVEQGRNYFNSMCKDYGIAPGIEHYNCMVDLLSRVELLEEAEDLIN--KSPFRND 508

Query: 117 VVAWGAII 124
              W AI+
Sbjct: 509 SSLWAAIL 516


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 181/629 (28%), Positives = 317/629 (50%), Gaps = 43/629 (6%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F+ MPE N+VSW  +++GY    +  K   +FC M        + + ++ L     
Sbjct: 177 ARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKG 236

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSK-CGLADNALKVFYRIKDPDVVAWGA 122
            G +   + +  +A++ G   D  +  +++++YS+   + D A+K F  + + +   W  
Sbjct: 237 LGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWST 296

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I  L   G    A  ++      S+           R    TG  +CG    A I    
Sbjct: 297 MIAALSHGGRIDAAIAVYERDPVKSIA---------CRTALITGLAQCGRIDDARILFEQ 347

Query: 183 FESDTLVG-NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
                +V  NAL++ YM+NG V+    +F+ +  ++++SW  + + +      ++ L + 
Sbjct: 348 IPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLL 407

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK- 300
            ++   G  P++ +   I  ACS++  +  G Q+H+  +K     N     +L+ MY K 
Sbjct: 408 QELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKC 467

Query: 301 ------------------------------SGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
                                         +  L++A   FD++ ++D  ++T II++YA
Sbjct: 468 RNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYA 527

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
            A ++  A+  F+ M  E    N   L   L  C  +     G+ +H++A+K G   ++ 
Sbjct: 528 HAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELI 587

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
           V+ AL++MY KCG  D +  +F     RD  +WN +I GY +HGLG +A++ ++ M   G
Sbjct: 588 VANALISMYFKCGCAD-SRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAG 646

Query: 451 YVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEI 510
            +P+E+TFV +L+ACSH GL++EG K F S+ + YG+TP  +H+ACM+D+LGR G     
Sbjct: 647 VLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGA 706

Query: 511 ENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQ 570
           E FI +  + P+ ++W  LLGAC  H N E+ ++ AEKL  +EP    NYV  S+I ++ 
Sbjct: 707 EQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSL 766

Query: 571 GRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           G W + + VR ++  QG+ KEP CSW ++
Sbjct: 767 GMWGEVAEVRKIMKQQGVIKEPGCSWTQI 795



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 114/510 (22%), Positives = 224/510 (43%), Gaps = 52/510 (10%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLST---VLKG 60
           A+ VF +MP  ++++WN++++ Y  +G       +  + +D+    S  ++ T   +L G
Sbjct: 53  AREVFDAMPRRDIIAWNSMISAYCHNG-------MPDAARDLYDAISGGNMRTGAILLSG 105

Query: 61  FANSGYI-KAGQVVHAMAIRLGCALDKFLSC--------------------------SLV 93
           +   G + +A +V   M  R   A +  +SC                          S++
Sbjct: 106 YGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSML 165

Query: 94  DMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQF 153
             Y       +A  +F ++ + ++V+W  +I+   +     +A  IF  M    + P+Q 
Sbjct: 166 TGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQS 225

Query: 154 VLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRV-SYGSRVFEA 212
              S + A    G+    ES+  +  K GFE D ++G A++++Y  +  V     + FE+
Sbjct: 226 NFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFES 285

Query: 213 IAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFG 272
           +  ++  +W+ + +        D  + ++ +  +K         I  L  C  + D    
Sbjct: 286 MIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACR-TALITGLAQCGRIDD---- 340

Query: 273 KQLHAHTIKHSLDGNHVVG-TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQ 331
               A  +   +    VV   +L+  Y ++G + +A   FD +  ++  ++  +I  YAQ
Sbjct: 341 ----ARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQ 396

Query: 332 AGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFV 391
            G +E AL   +++   G+  +  +L S    CS +  L  G  +HS+AVK G   + F 
Sbjct: 397 NGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFA 456

Query: 392 STALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGY 451
             AL+ MY KC +++ A  VF     +D  SWN  +   V++ L ++A   F  ML    
Sbjct: 457 CNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSR-- 514

Query: 452 VPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
             D++++  ++SA +H     E    F ++
Sbjct: 515 --DDVSWTTIISAYAHAEQSNEAMGAFKTM 542



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/485 (23%), Positives = 208/485 (42%), Gaps = 52/485 (10%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A + F+SM E N  +W+ ++   +  G     + ++   +D  K  +    + ++ G
Sbjct: 276 LDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVY--ERDPVKSIA--CRTALITG 331

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCS---LVDMYSKCGLADNALKVFYRIKDPDV 117
            A  G I   +++          + + +  S   L+  Y + G+ + A ++F ++   + 
Sbjct: 332 LAQCGRIDDARILFEQ-------IPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNT 384

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           ++W  +I    Q G  +EA  +   +  S + P+   LTS+  A +       G  +H++
Sbjct: 385 ISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSL 444

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
             K G + ++   NAL++MY +   + Y  +VF  +  +D VSWN+  +     +  D+ 
Sbjct: 445 AVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEA 504

Query: 238 LRIFYQML-----------------------LKGFK--------PNMCTFIVILKACSSL 266
              F  ML                       +  FK        PN     ++L  C SL
Sbjct: 505 RNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSL 564

Query: 267 SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
                G+Q+H   IK  +D   +V  +L+ MY K GC  D+   FD +  +D+F +  II
Sbjct: 565 GASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGC-ADSRRIFDLMEERDIFTWNTII 623

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG-RLLHSIAVKTGH 385
           T YAQ G    A+K ++ M   G+  NE T    LN CS    +  G +   S++   G 
Sbjct: 624 TGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGL 683

Query: 386 LLDMFVSTALVAMYAKCGSIDDAEA-VFKGSALRDTASWNMMIGGYVKHG---LGEKALE 441
                    +V +  + G +  AE  ++      DT  W+ ++G    H    +G++A E
Sbjct: 684 TPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAE 743

Query: 442 A-FRM 445
             FR+
Sbjct: 744 KLFRI 748



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 97/472 (20%), Positives = 206/472 (43%), Gaps = 60/472 (12%)

Query: 98  KCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTS 157
           + G    A +VF  +   D++AW ++I+     G    A  +++ +   +++    +L+ 
Sbjct: 46  RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLS- 104

Query: 158 LVRATTETGDQRCGESIHAVICKYG-FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ 216
                   G  R G  + A     G  E +T+  NA++S Y++NG ++   R+F+A+  +
Sbjct: 105 --------GYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSR 156

Query: 217 DSVSWNALF-------------------------------SRFQDYESPDQGLRIFYQML 245
           D  SWN++                                S +   E+  +   IF +M 
Sbjct: 157 DVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMH 216

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
            +G  P+   F   L A   L ++   + L    +K   + + V+GT+++++Y +   + 
Sbjct: 217 REGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVL 276

Query: 306 DAGVA-FDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
           D  +  F+S+  ++ + ++ +I + +  G  + A+  + +  ++ I        + + G 
Sbjct: 277 DTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACR----TALITGL 332

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVS-TALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           +    + + R+L     +      + VS  AL+  Y + G +++A+ +F     R+T SW
Sbjct: 333 AQCGRIDDARILFEQIPEP-----IVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISW 387

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK 482
             MI GY ++G  E+AL   + +   G +P   +   +  ACS++  +E G + H  ++K
Sbjct: 388 AGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVK 447

Query: 483 KIYGITPTIKHFAC--MIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
               +      FAC  +I + G+  +  E    +    +T + + W + L A
Sbjct: 448 ----VGCQFNSFACNALITMYGKC-RNMEYARQVFSRMVTKDIVSWNSFLAA 494



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 84/402 (20%), Positives = 161/402 (40%), Gaps = 59/402 (14%)

Query: 201 GRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVIL 260
           GRV     VF+A+  +D ++WN++ S +     PD   R  Y  +  G   NM T  ++L
Sbjct: 48  GRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAA-RDLYDAISGG---NMRTGAILL 103

Query: 261 KACSSLSDVGFGKQLHAHTI-KHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKD- 318
                L     G+ L A  +    L+ N V   +++  Y ++G +  A   FD++ ++D 
Sbjct: 104 SGYGRL-----GRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDV 158

Query: 319 ------------------------------LFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
                                         L ++T +I+ Y +      A   F KM  E
Sbjct: 159 SSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHRE 218

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSI-DD 407
           G+  ++   AS L+    +  L     L  +A+KTG   D+ + TA++ +Y++  S+ D 
Sbjct: 219 GLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDT 278

Query: 408 AEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
           A   F+    R+  +W+ MI      G  + A+  +    +   V        +++  + 
Sbjct: 279 AIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVY----ERDPVKSIACRTALITGLAQ 334

Query: 468 MGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWE 527
            G I++ +  F  I +     P +  +  +I    + G   E +    +     N + W 
Sbjct: 335 CGRIDDARILFEQIPE-----PIVVSWNALITGYMQNGMVNEAKELFDKMPFR-NTISWA 388

Query: 528 NLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISAT 569
            ++   + +G        +E+ L L  ++  + + PS  S T
Sbjct: 389 GMIAGYAQNGR-------SEEALGLLQELHRSGMLPSLSSLT 423


>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
          Length = 770

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 179/547 (32%), Positives = 286/547 (52%), Gaps = 12/547 (2%)

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
           G + A + VH    + G   D F++ SLV+ Y +CG A +A ++F  + + +VV W A++
Sbjct: 92  GSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGAARDARRLFDGMPERNVVTWTALV 151

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
           T            ++F  M E    P+ + L + + A   + D   G+ +H    KYG E
Sbjct: 152 TGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAE 211

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR-FQDYESPDQGLRIFYQ 243
           S T +GN+L S+Y + G +    R F  I  ++ ++W  + S   +D E  + GL +F  
Sbjct: 212 SITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEECVELGLSLFID 271

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           ML+ G  PN  T   ++  C +  D+  GKQ+ A + K   + N  V  S + +Y + G 
Sbjct: 272 MLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGE 331

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAE-----------MALKCFRKMRLEGIKS 352
            ++A   F+ + +  +  + A+I+ YAQ  ++             AL  FR ++   +K 
Sbjct: 332 TDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKP 391

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
           + FT +S L+ CS +  L  G  +H+  +K+G L D+ V++ALV MY KCG I DA   F
Sbjct: 392 DLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAF 451

Query: 413 KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE 472
                R   +W  MI GY +HG  ++A++ F  M   G  P+EITFV +LSACS+ GL+E
Sbjct: 452 LEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVE 511

Query: 473 EGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
           E + +F  +KK Y I P + H+ CMID+  R G+  +  +FI  T   PN  +W +L+  
Sbjct: 512 EAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAG 571

Query: 533 CSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEP 592
           C  HGN+EL    A+KLLEL+PK    Y+   ++  +  RW D + VR L+  + +    
Sbjct: 572 CRSHGNMELAFYAADKLLELKPKGIETYILLLNMYISTERWQDVARVRKLMKQEDVGILR 631

Query: 593 SCSWIEV 599
             SWI +
Sbjct: 632 DRSWITI 638



 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 136/460 (29%), Positives = 234/460 (50%), Gaps = 16/460 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R+F  MPE NVV+W AL+ GY  +      + +F  M +M +  S ++L   L     
Sbjct: 132 ARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLA 191

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           S  +  G+ VH  AI+ G      +  SL  +Y+K G  D+AL+ F+RI + +V+ W  +
Sbjct: 192 SCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTM 251

Query: 124 IT-CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I+ C + + C +    +F  M    V PN+F LTS++       D   G+ + A   K G
Sbjct: 252 ISACAEDEECVELGLSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIG 311

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNAL---FSRFQDYESPD---- 235
            E++  V N+ + +Y+  G      R+FE +     ++WNA+   +++  D    D    
Sbjct: 312 CETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQAR 371

Query: 236 ----QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
               Q L IF  +     KP++ TF  IL  CS++  +  G+Q+HA TIK     + VV 
Sbjct: 372 SRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVN 431

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
           ++LV+MY+K GC++DA  AF  +  +    +T++I+ Y+Q G+ + A++ F +MRL G++
Sbjct: 432 SALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVR 491

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST--ALVAMYAKCGSIDDAE 409
            NE T  S L+ CS    +        + +K  + ++  V     ++ M+ + G ++DA 
Sbjct: 492 PNEITFVSLLSACSYAGLVEEAEHYFDM-MKKEYCIEPVVDHYGCMIDMFVRLGRVEDAF 550

Query: 410 AVFKGSALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
           +  K +    + A W+ ++ G   HG  E A  A   +L+
Sbjct: 551 SFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLE 590



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 114/423 (26%), Positives = 197/423 (46%), Gaps = 23/423 (5%)

Query: 158 LVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQD 217
           L+    E G      ++H  + K G  +D  V  +LV+ YM  G      R+F+ +  ++
Sbjct: 84  LLHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGAARDARRLFDGMPERN 143

Query: 218 SVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHA 277
            V+W AL + +     P  GL +F +ML  G  P+  T    L AC +  DV  GKQ+H 
Sbjct: 144 VVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQVHG 203

Query: 278 HTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGE-AE 336
           + IK+  +    +G SL  +Y K G L+ A  AF  +  K++  +T +I++ A+  E  E
Sbjct: 204 YAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEECVE 263

Query: 337 MALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALV 396
           + L  F  M ++G+  NEFTL S ++ C     L  G+ + + + K G   ++ V  + +
Sbjct: 264 LGLSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTM 323

Query: 397 AMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK-----------HGLGEKALEAFRM 445
            +Y + G  D+A  +F+        +WN MI GY +              G +AL  FR 
Sbjct: 324 YLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRD 383

Query: 446 MLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRA 504
           +      PD  TF  +LS CS M  +E+G++ H  +IK   G    +   + ++++  + 
Sbjct: 384 LKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKS--GFLSDVVVNSALVNMYNKC 441

Query: 505 GKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564
           G   +      E   T   + W +++   S HG         ++ ++L  +M    V P+
Sbjct: 442 GCIQDANKAFLEMP-TRTFVTWTSMISGYSQHGQ-------PQEAIQLFEEMRLAGVRPN 493

Query: 565 DIS 567
           +I+
Sbjct: 494 EIT 496



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/413 (25%), Positives = 195/413 (47%), Gaps = 53/413 (12%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKV-MHLFCSMKDMEKKFSKFSLSTVLK 59
           ++ A R F  +PE NV++W  +++  AE  +  ++ + LF  M       ++F+L++V+ 
Sbjct: 230 LDSALRAFWRIPEKNVITWTTMISACAEDEECVELGLSLFIDMLMDGVMPNEFTLTSVMS 289

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
                  +  G+ V A + ++GC  +  +  S + +Y + G  D A+++F +++D  ++ 
Sbjct: 290 LCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIIT 349

Query: 120 WGAIITCL---------DQQGCCQ--EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ 168
           W A+I+           D Q   +  +A  IF  ++ S +KP+ F  +S++   +     
Sbjct: 350 WNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMAL 409

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228
             GE IHA   K GF SD +V +ALV+MY + G +   ++ F  +  +  V+W ++ S +
Sbjct: 410 EQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGY 469

Query: 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH 288
             +  P + +++F +M L G +PN  TF+ +L ACS           +A  ++   +  H
Sbjct: 470 SQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACS-----------YAGLVE---EAEH 515

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
                  DM  K  C+E             +  Y  +I  + + G  E A   F  ++  
Sbjct: 516 Y-----FDMMKKEYCIEPV-----------VDHYGCMIDMFVRLGRVEDA---FSFIKRT 556

Query: 349 GIKSNEFTLASCLNGCSP-----VATLANGRLLH--SIAVKTG-HLLDMFVST 393
           G + NE   +S + GC       +A  A  +LL      ++T   LL+M++ST
Sbjct: 557 GFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYILLLNMYIST 609



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 104/223 (46%), Gaps = 1/223 (0%)

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           ML +G       ++ +L  C  +  +G  + +H H  K     +  V TSLV+ Y + G 
Sbjct: 69  MLTEGKAVQSAMYVPLLHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGA 128

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
             DA   FD +  +++  +TA++T Y    +  + L+ F +M   G   + +TL + LN 
Sbjct: 129 ARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNA 188

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C     +  G+ +H  A+K G      +  +L ++YAK GS+D A   F     ++  +W
Sbjct: 189 CLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITW 248

Query: 424 NMMIGGYVK-HGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC 465
             MI    +     E  L  F  ML +G +P+E T   V+S C
Sbjct: 249 TTMISACAEDEECVELGLSLFIDMLMDGVMPNEFTLTSVMSLC 291



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 98/229 (42%), Gaps = 16/229 (6%)

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404
           M  EG           L+ C  + +L   R +H    KTG   DMFV+T+LV  Y +CG+
Sbjct: 69  MLTEGKAVQSAMYVPLLHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGA 128

Query: 405 IDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
             DA  +F G   R+  +W  ++ GY  +      LE F  ML+ G  P   T    L+A
Sbjct: 129 ARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNA 188

Query: 465 CSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKF-TEIENF--ITETKLT 520
           C     ++ GK+ H  +IK  YG          +  +  + G   + +  F  I E    
Sbjct: 189 CLASCDVDLGKQVHGYAIK--YGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEK--- 243

Query: 521 PNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISAT 569
            N + W  ++ AC+       DE+  E  L L   M  + V P++ + T
Sbjct: 244 -NVITWTTMISACAE------DEECVELGLSLFIDMLMDGVMPNEFTLT 285


>gi|15233292|ref|NP_188854.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273371|sp|Q9LIE7.1|PP246_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22150, chloroplastic; Flags: Precursor
 gi|11994734|dbj|BAB03063.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|110739449|dbj|BAF01634.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643073|gb|AEE76594.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 820

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 200/612 (32%), Positives = 325/612 (53%), Gaps = 17/612 (2%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           ++ ++VF +M   NVV+WN L++ Y ++G   +    F  M  ME K S  S   V    
Sbjct: 165 DVVRKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAV 224

Query: 62  ANSGYIKAGQVVHAMAIRLG--CALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           + S  IK   V + + ++LG     D F+  S + MY++ G  +++ +VF    + ++  
Sbjct: 225 SISRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEV 284

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFV---LTSLVRATTETGDQRC--GESI 174
           W  +I    Q  C  E+ ++F      ++   + V   +T L+ A+  +  Q+   G   
Sbjct: 285 WNTMIGVYVQNDCLVESIELF----LEAIGSKEIVSDEVTYLLAASAVSALQQVELGRQF 340

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H  + K   E   ++ N+L+ MY   G V     VF ++  +D VSWN + S F      
Sbjct: 341 HGFVSKNFRELPIVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLD 400

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
           D+GL + Y+M  +GFK +  T   +L A S+L +   GKQ HA  I+  +    +  + L
Sbjct: 401 DEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQGIQFEGM-NSYL 459

Query: 295 VDMYDKSGCLEDAGVAFDS--LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           +DMY KSG +  +   F+    A +D   + ++I+ Y Q G  E     FRKM  + I+ 
Sbjct: 460 IDMYSKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRP 519

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
           N  T+AS L  CS + ++  G+ LH  +++     ++FV++ALV MY+K G+I  AE +F
Sbjct: 520 NAVTVASILPACSQIGSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAEDMF 579

Query: 413 KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE 472
             +  R++ ++  MI GY +HG+GE+A+  F  M + G  PD ITFV VLSACS+ GLI+
Sbjct: 580 SQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQESGIKPDAITFVAVLSACSYSGLID 639

Query: 473 EGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPN-ALVWENLLG 531
           EG K F  ++++Y I P+ +H+ C+ D+LGR G+  E   F+       N A +W +LLG
Sbjct: 640 EGLKIFEEMREVYNIQPSSEHYCCITDMLGRVGRVNEAYEFVKGLGEEGNIAELWGSLLG 699

Query: 532 ACSWHGNIELDEKDAEKLLELEP-KMESNY-VFPSDISATQGRWNDFSGVRALLSSQGIK 589
           +C  HG +EL E  +E+L + +  K  S Y V  S++ A + +W     VR  +  +G+K
Sbjct: 700 SCKLHGELELAETVSERLAKFDKGKNFSGYEVLLSNMYAEEQKWKSVDKVRRGMREKGLK 759

Query: 590 KEPSCSWIEVDG 601
           KE   S IE+ G
Sbjct: 760 KEVGRSGIEIAG 771



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 155/625 (24%), Positives = 296/625 (47%), Gaps = 55/625 (8%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK--KFSKFSLSTVLK 59
           +LA+++F ++P+   V WN ++ G+  +    + +  +  MK          ++ S+ LK
Sbjct: 56  QLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTNCDAYTYSSTLK 115

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLA------DNALKVFYRIK 113
             A +  +KAG+ VH   IR      + +  SL++MY  C  A      D   KVF  ++
Sbjct: 116 ACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPDCFEYDVVRKVFDNMR 175

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES 173
             +VVAW  +I+   + G   EA + F +M    VKP+     ++  A + +   +    
Sbjct: 176 RKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSISRSIKKANV 235

Query: 174 IHAVICKYGFE--SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY 231
            + ++ K G E   D  V ++ +SMY E G +    RVF++   ++   WN +   +   
Sbjct: 236 FYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTMIGVYVQN 295

Query: 232 ESPDQGLRIFYQML-LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
           +   + + +F + +  K    +  T+++   A S+L  V  G+Q H    K+  +   V+
Sbjct: 296 DCLVESIELFLEAIGSKEIVSDEVTYLLAASAVSALQQVELGRQFHGFVSKNFRELPIVI 355

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
             SL+ MY + G +  +   F S+  +D+ ++  +I+++ Q G  +  L    +M+ +G 
Sbjct: 356 VNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGF 415

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
           K +  T+ + L+  S +     G+  H+  ++ G   +  +++ L+ MY+K G I  ++ 
Sbjct: 416 KIDYITVTALLSAASNLRNKEIGKQTHAFLIRQGIQFEG-MNSYLIDMYSKSGLIRISQK 474

Query: 411 VFKGS--ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
           +F+GS  A RD A+WN MI GY ++G  EK    FR ML++   P+ +T   +L ACS +
Sbjct: 475 LFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQI 534

Query: 469 GLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK--------- 518
           G ++ GK+ H  SI++   +   +   + ++D+  +AG     E+  ++TK         
Sbjct: 535 GSVDLGKQLHGFSIRQY--LDQNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTT 592

Query: 519 -------------------------LTPNALVWENLLGACSWHGNIELDEKDAEKLLE-- 551
                                    + P+A+ +  +L ACS+ G I+   K  E++ E  
Sbjct: 593 MILGYGQHGMGERAISLFLSMQESGIKPDAITFVAVLSACSYSGLIDEGLKIFEEMREVY 652

Query: 552 -LEPKMESNYVFPSDISATQGRWND 575
            ++P  E +Y   +D+    GR N+
Sbjct: 653 NIQPSSE-HYCCITDMLGRVGRVNE 676



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 117/447 (26%), Positives = 208/447 (46%), Gaps = 21/447 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E ++RVF S  E N+  WN ++  Y ++    + + LF       K+     ++ +L  
Sbjct: 267 IESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIG-SKEIVSDEVTYLLAA 325

Query: 61  FANSGY--IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
            A S    ++ G+  H    +    L   +  SL+ MYS+CG    +  VF  +++ DVV
Sbjct: 326 SAVSALQQVELGRQFHGFVSKNFRELPIVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVV 385

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +W  +I+   Q G   E   +   M++   K +   +T+L+ A +   ++  G+  HA +
Sbjct: 386 SWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHAFL 445

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFE--AIAHQDSVSWNALFSRFQDYESPDQ 236
            + G + + +  + L+ MY ++G +    ++FE    A +D  +WN++ S +      ++
Sbjct: 446 IRQGIQFEGM-NSYLIDMYSKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEK 504

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
              +F +ML +  +PN  T   IL ACS +  V  GKQLH  +I+  LD N  V ++LVD
Sbjct: 505 TFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQYLDQNVFVASALVD 564

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           MY K+G ++ A   F     ++   YT +I  Y Q G  E A+  F  M+  GIK +  T
Sbjct: 565 MYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQESGIKPDAIT 624

Query: 357 LASCLNGCSPVATLANG-------RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
             + L+ CS    +  G       R +++I   + H         +  M  + G +++A 
Sbjct: 625 FVAVLSACSYSGLIDEGLKIFEEMREVYNIQPSSEHY------CCITDMLGRVGRVNEAY 678

Query: 410 AVFKGSALRDTAS--WNMMIGGYVKHG 434
              KG       +  W  ++G    HG
Sbjct: 679 EFVKGLGEEGNIAELWGSLLGSCKLHG 705



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 147/305 (48%), Gaps = 13/305 (4%)

Query: 199 ENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMC---T 255
           ++G      ++F+AI    +V WN +   F     P + L +FY  + K      C   T
Sbjct: 51  QDGNPQLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEAL-LFYSRMKKTAPFTNCDAYT 109

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY----DKSGCLEDAGV-- 309
           +   LKAC+   ++  GK +H H I+   + + VV  SL++MY    +   C E   V  
Sbjct: 110 YSSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPDCFEYDVVRK 169

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369
            FD++  K++ A+  +I+ Y + G    A + F  M    +K +  +  +     S   +
Sbjct: 170 VFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSISRS 229

Query: 370 LANGRLLHSIAVKTG--HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
           +    + + + +K G  ++ D+FV ++ ++MYA+ G I+ +  VF     R+   WN MI
Sbjct: 230 IKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTMI 289

Query: 428 GGYVKHGLGEKALEAFRMML-DEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           G YV++    +++E F   +  +  V DE+T+++  SA S +  +E G++    + K + 
Sbjct: 290 GVYVQNDCLVESIELFLEAIGSKEIVSDEVTYLLAASAVSALQQVELGRQFHGFVSKNFR 349

Query: 487 ITPTI 491
             P +
Sbjct: 350 ELPIV 354


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 181/629 (28%), Positives = 317/629 (50%), Gaps = 43/629 (6%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F+ MPE N+VSW  +++GY    +  K   +FC M        + + ++ L     
Sbjct: 177 ARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKG 236

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSK-CGLADNALKVFYRIKDPDVVAWGA 122
            G +   + +  +A++ G   D  +  +++++YS+   + D A+K F  + + +   W  
Sbjct: 237 LGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWST 296

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I  L   G    A  ++      S+           R    TG  +CG    A I    
Sbjct: 297 MIAALSHGGRIDAAIAVYERDPVKSIA---------CRTALITGLAQCGRIDDARILFEQ 347

Query: 183 FESDTLVG-NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
                +V  NAL++ YM+NG V+    +F+ +  ++++SW  + + +      ++ L + 
Sbjct: 348 IPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLL 407

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK- 300
            ++   G  P++ +   I  ACS++  +  G Q+H+  +K     N     +L+ MY K 
Sbjct: 408 QELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKC 467

Query: 301 ------------------------------SGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
                                         +  L++A   FD++ ++D  ++T II++YA
Sbjct: 468 RNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYA 527

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
            A ++  A+  F+ M  E    N   L   L  C  +     G+ +H++A+K G   ++ 
Sbjct: 528 HAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELI 587

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
           V+ AL++MY KCG  D +  +F     RD  +WN +I GY +HGLG +A++ ++ M   G
Sbjct: 588 VANALISMYFKCGCAD-SRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAG 646

Query: 451 YVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEI 510
            +P+E+TFV +L+ACSH GL++EG K F S+ + YG+TP  +H+ACM+D+LGR G     
Sbjct: 647 VLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGA 706

Query: 511 ENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQ 570
           E FI +  + P+ ++W  LLGAC  H N E+ ++ AEKL  +EP    NYV  S+I ++ 
Sbjct: 707 EQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSL 766

Query: 571 GRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           G W + + VR ++  QG+ KEP CSW ++
Sbjct: 767 GMWGEVAEVRKIMKQQGVIKEPGCSWTQI 795



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 114/510 (22%), Positives = 224/510 (43%), Gaps = 52/510 (10%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLST---VLKG 60
           A+ VF +MP  ++++WN++++ Y  +G       +  + +D+    S  ++ T   +L G
Sbjct: 53  AREVFDAMPRRDIIAWNSMISAYCHNG-------MPDAARDLYDAISGGNMRTGAILLSG 105

Query: 61  FANSGYI-KAGQVVHAMAIRLGCALDKFLSC--------------------------SLV 93
           +   G + +A +V   M  R   A +  +SC                          S++
Sbjct: 106 YGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSML 165

Query: 94  DMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQF 153
             Y       +A  +F ++ + ++V+W  +I+   +     +A  IF  M    + P+Q 
Sbjct: 166 TGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQS 225

Query: 154 VLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRV-SYGSRVFEA 212
              S + A    G+    ES+  +  K GFE D ++G A++++Y  +  V     + FE+
Sbjct: 226 NFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFES 285

Query: 213 IAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFG 272
           +  ++  +W+ + +        D  + ++ +  +K         I  L  C  + D    
Sbjct: 286 MIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACR-TALITGLAQCGRIDD---- 340

Query: 273 KQLHAHTIKHSLDGNHVVG-TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQ 331
               A  +   +    VV   +L+  Y ++G + +A   FD +  ++  ++  +I  YAQ
Sbjct: 341 ----ARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQ 396

Query: 332 AGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFV 391
            G +E AL   +++   G+  +  +L S    CS +  L  G  +HS+AVK G   + F 
Sbjct: 397 NGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFA 456

Query: 392 STALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGY 451
             AL+ MY KC +++ A  VF     +D  SWN  +   V++ L ++A   F  ML    
Sbjct: 457 CNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSR-- 514

Query: 452 VPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
             D++++  ++SA +H     E    F ++
Sbjct: 515 --DDVSWTTIISAYAHAEQSNEAMGAFKTM 542



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 114/485 (23%), Positives = 208/485 (42%), Gaps = 52/485 (10%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A + F+SM E N  +W+ ++   +  G     + ++   +D  K  +    + ++ G
Sbjct: 276 LDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVY--ERDPVKSIA--CRTALITG 331

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCS---LVDMYSKCGLADNALKVFYRIKDPDV 117
            A  G I   +++          + + +  S   L+  Y + G+ + A ++F ++   + 
Sbjct: 332 LAQCGRIDDARILFEQ-------IPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNT 384

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           ++W  +I    Q G  +EA  +   +  S + P+   LTS+  A +       G  +H++
Sbjct: 385 ISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSL 444

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
             K G + ++   NAL++MY +   + Y  +VF  +  +D VSWN+  +     +  D+ 
Sbjct: 445 AVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEA 504

Query: 238 LRIFYQML-----------------------LKGFK--------PNMCTFIVILKACSSL 266
              F  ML                       +  FK        PN     ++L  C SL
Sbjct: 505 RNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSL 564

Query: 267 SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
                G+Q+H   IK  +D   +V  +L+ MY K GC  D+   FD +  +D+F +  II
Sbjct: 565 GASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGC-ADSRRIFDLMEERDIFTWNTII 623

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG-RLLHSIAVKTGH 385
           T YAQ G    A+K ++ M   G+  NE T    LN CS    +  G +   S++   G 
Sbjct: 624 TGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGL 683

Query: 386 LLDMFVSTALVAMYAKCGSIDDAEA-VFKGSALRDTASWNMMIGGYVKHG---LGEKALE 441
                    +V +  + G +  AE  ++      DT  W+ ++G    H    +G++A E
Sbjct: 684 TPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAE 743

Query: 442 A-FRM 445
             FR+
Sbjct: 744 KLFRI 748



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 97/472 (20%), Positives = 206/472 (43%), Gaps = 60/472 (12%)

Query: 98  KCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTS 157
           + G    A +VF  +   D++AW ++I+     G    A  +++ +   +++    +L+ 
Sbjct: 46  RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLS- 104

Query: 158 LVRATTETGDQRCGESIHAVICKYG-FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ 216
                   G  R G  + A     G  E +T+  NA++S Y++NG ++   R+F+A+  +
Sbjct: 105 --------GYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSR 156

Query: 217 DSVSWNALF-------------------------------SRFQDYESPDQGLRIFYQML 245
           D  SWN++                                S +   E+  +   IF +M 
Sbjct: 157 DVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMH 216

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
            +G  P+   F   L A   L ++   + L    +K   + + V+GT+++++Y +   + 
Sbjct: 217 REGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVL 276

Query: 306 DAGVA-FDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
           D  +  F+S+  ++ + ++ +I + +  G  + A+  + +  ++ I        + + G 
Sbjct: 277 DTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACR----TALITGL 332

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVS-TALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           +    + + R+L     +      + VS  AL+  Y + G +++A+ +F     R+T SW
Sbjct: 333 AQCGRIDDARILFEQIPEP-----IVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISW 387

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK 482
             MI GY ++G  E+AL   + +   G +P   +   +  ACS++  +E G + H  ++K
Sbjct: 388 AGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVK 447

Query: 483 KIYGITPTIKHFAC--MIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
               +      FAC  +I + G+  +  E    +    +T + + W + L A
Sbjct: 448 ----VGCQFNSFACNALITMYGKC-RNMEYARQVFSRMVTKDIVSWNSFLAA 494



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 84/402 (20%), Positives = 161/402 (40%), Gaps = 59/402 (14%)

Query: 201 GRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVIL 260
           GRV     VF+A+  +D ++WN++ S +     PD   R  Y  +  G   NM T  ++L
Sbjct: 48  GRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAA-RDLYDAISGG---NMRTGAILL 103

Query: 261 KACSSLSDVGFGKQLHAHTI-KHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKD- 318
                L     G+ L A  +    L+ N V   +++  Y ++G +  A   FD++ ++D 
Sbjct: 104 SGYGRL-----GRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDV 158

Query: 319 ------------------------------LFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
                                         L ++T +I+ Y +      A   F KM  E
Sbjct: 159 SSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHRE 218

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSI-DD 407
           G+  ++   AS L+    +  L     L  +A+KTG   D+ + TA++ +Y++  S+ D 
Sbjct: 219 GLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDT 278

Query: 408 AEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
           A   F+    R+  +W+ MI      G  + A+  +    +   V        +++  + 
Sbjct: 279 AIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVY----ERDPVKSIACRTALITGLAQ 334

Query: 468 MGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWE 527
            G I++ +  F  I +     P +  +  +I    + G   E +    +     N + W 
Sbjct: 335 CGRIDDARILFEQIPE-----PIVVSWNALITGYMQNGMVNEAKELFDKMPFR-NTISWA 388

Query: 528 NLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISAT 569
            ++   + +G        +E+ L L  ++  + + PS  S T
Sbjct: 389 GMIAGYAQNGR-------SEEALGLLQELHRSGMLPSLSSLT 423


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 167/458 (36%), Positives = 260/458 (56%), Gaps = 1/458 (0%)

Query: 143 MRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGR 202
           MR S   PNQF  +S++ A+  T     G+ +H++I K+GF+++  VG ALV MY +   
Sbjct: 1   MRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCAD 60

Query: 203 VSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL-KGFKPNMCTFIVILK 261
           +    RVF+ +  ++ VSWN++   F      D+ + +F  +L  K   PN  +   +L 
Sbjct: 61  MHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLS 120

Query: 262 ACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFA 321
           AC+++  + FG+Q+H   +K  L     V  SL+DMY K    ++    F  + ++D+  
Sbjct: 121 ACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVT 180

Query: 322 YTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAV 381
           +  ++  + Q  + E A   F  MR EGI  +E + ++ L+  + +A L  G  +H   +
Sbjct: 181 WNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQII 240

Query: 382 KTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALE 441
           K G++ +M +  +L+ MYAKCGS+ DA  VF+G    +  SW  MI  Y  HG   + +E
Sbjct: 241 KLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIE 300

Query: 442 AFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDIL 501
            F  ML EG  P  +TFV VLSACSH G +EEG  HF+S+KKI+ + P  +H+ACM+D+L
Sbjct: 301 LFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLL 360

Query: 502 GRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYV 561
           GRAG   E + FI    + P   VW  LLGAC  +GN+++  + AE+L E+EP    NYV
Sbjct: 361 GRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYV 420

Query: 562 FPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
             +++    GR  + + VR L+   G++KEP CSWI+V
Sbjct: 421 LLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDV 458



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/467 (26%), Positives = 234/467 (50%), Gaps = 17/467 (3%)

Query: 50  SKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF 109
           ++F+ S++L   A +  +  GQ +H++  + G   + F+  +LVDMY+KC    +A++VF
Sbjct: 9   NQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVF 68

Query: 110 YRIKDPDVVAWGAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQ 168
            ++ + ++V+W ++I           A  +F +++RE +V PN+  ++S++ A    G  
Sbjct: 69  DQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGL 128

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228
             G  +H V+ K+G    T V N+L+ MY +      G ++F+ +  +D V+WN L   F
Sbjct: 129 NFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGF 188

Query: 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH 288
              +  ++    F+ M  +G  P+  +F  +L + +SL+ +  G  +H   IK     N 
Sbjct: 189 VQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNM 248

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
            +  SL+ MY K G L DA   F+ + + ++ ++TA+I++Y   G A   ++ F  M  E
Sbjct: 249 CILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSE 308

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS--TALVAMYAKCGSID 406
           GI+ +  T    L+ CS    +  G L H  ++K  H ++        +V +  + G +D
Sbjct: 309 GIEPSHVTFVCVLSACSHTGRVEEG-LAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLD 367

Query: 407 DAEAVFKGSALRDTAS-WNMMIGGYVKHG---LGEKALEAFRMMLDEGYVPDEITFVVVL 462
           +A+   +   ++ T S W  ++G   K+G   +G +A E  R+   E Y P    +V++ 
Sbjct: 368 EAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAE--RLFEMEPYNPG--NYVLLA 423

Query: 463 SACSHMGLIEEGKKHFSSIKKIYGITPTIKHFAC-MIDILGRAGKFT 508
           + C+  G +EE  +    ++++ G+    K   C  ID+      FT
Sbjct: 424 NMCTRSGRLEEANE----VRRLMGVNGVRKEPGCSWIDVKNMTFVFT 466



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 169/323 (52%), Gaps = 10/323 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFS----KFSLST 56
           M  A RVF  MPE N+VSWN+++ G+  +    + + +F   KD+ ++ +    + S+S+
Sbjct: 61  MHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVF---KDVLREKTVIPNEVSVSS 117

Query: 57  VLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD 116
           VL   AN G +  G+ VH + ++ G     ++  SL+DMY KC   D  +K+F  + D D
Sbjct: 118 VLSACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRD 177

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
           VV W  ++    Q    +EA   F +MR   + P++   ++++ ++        G +IH 
Sbjct: 178 VVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHD 237

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
            I K G+  +  +  +L++MY + G +    +VFE I   + +SW A+ S +Q +   +Q
Sbjct: 238 QIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQ 297

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK--HSLDGNHVVGTSL 294
            + +F  ML +G +P+  TF+ +L ACS    V  G   H +++K  H ++        +
Sbjct: 298 VIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLA-HFNSMKKIHDMNPGPEHYACM 356

Query: 295 VDMYDKSGCLEDAGVAFDSLANK 317
           VD+  ++G L++A    +S+  K
Sbjct: 357 VDLLGRAGWLDEAKRFIESMPMK 379


>gi|356540705|ref|XP_003538826.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g50420-like [Glycine max]
          Length = 715

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 190/596 (31%), Positives = 317/596 (53%), Gaps = 6/596 (1%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKV--MHLFCSMKDMEKKFSKFSLSTVLKGFANS 64
           VF  MP   +VS+NALL  Y+ +     +  + L+  M     + S  + +++L+  +  
Sbjct: 70  VFDKMPRRTIVSYNALLAAYSRASPNHAISALELYTQMVTNGLRPSSTTFTSLLQASSLL 129

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
            +   G  +HA   +LG   D  L  SL++MYS CG   +A  VF+ + D D VAW ++I
Sbjct: 130 EHWWFGSSLHAKGFKLGLN-DICLQTSLLNMYSNCGDLSSAELVFWDMVDRDHVAWNSLI 188

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
               +    +E   +F  M      P QF    ++ + +   D R G  IHA +      
Sbjct: 189 MGYLKNNKIEEGIWLFIKMMSVGFAPTQFTYCMVLNSCSRLKDYRSGRLIHAHVIVRNVS 248

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
            D  + NALV MY   G +    R+F  + + D VSWN++ + + + E  ++ + +F Q+
Sbjct: 249 LDLHLQNALVDMYCNAGNMQTAYRIFSRMENPDLVSWNSMIAGYSENEDGEKAMNLFVQL 308

Query: 245 LLKGF-KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
               F KP+  T+  I+ A        +GK LHA  IK   + +  VG++LV MY K+  
Sbjct: 309 QEMCFPKPDDYTYAGIISATGVFPSSSYGKSLHAEVIKTGFERSVFVGSTLVSMYFKNHE 368

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
            + A   F S++ KD+  +T +IT Y++  +   A++CF +M  EG + +++ L+  +N 
Sbjct: 369 SDAAWRVFCSISVKDVVLWTEMITGYSKMTDGICAIRCFFQMVHEGHEVDDYVLSGVVNA 428

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +A L  G ++H  AVK G+ ++M VS +L+ MYAK GS++ A  VF   +  D   W
Sbjct: 429 CANLAVLRQGEIIHCYAVKLGYDVEMSVSGSLIDMYAKNGSLEAAYLVFSQVSEPDLKCW 488

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N M+GGY  HG+ E+AL+ F  +L +G +PD++TF+ +LSACSH  L+E+GK  ++ +  
Sbjct: 489 NSMLGGYSHHGMVEEALQVFEEILKQGLIPDQVTFLSLLSACSHSRLVEQGKFLWNYMNS 548

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNAL-VWENLLGACSWHGNIELD 542
           I G+ P +KH++CM+ +  RA    E E  I ++    + L +W  LL AC  + N ++ 
Sbjct: 549 I-GLIPGLKHYSCMVTLFSRAALLEEAEEIINKSPYIEDNLELWRTLLSACVINKNFKVG 607

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
              AE++L L+ +     V  S++ A   +W+  + +R  +    + K P  SWIE
Sbjct: 608 IHAAEEVLRLKAEDGPTLVLLSNLYAAARKWDKVAEIRRNMRGLMLDKYPGLSWIE 663



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 126/492 (25%), Positives = 250/492 (50%), Gaps = 11/492 (2%)

Query: 67  IKAGQVVHAMAIRLGCAL---DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           ++  + +HA+ +    A      F+  +++ MY++CG   ++  VF ++    +V++ A+
Sbjct: 26  LREARQLHALILTTTTAFTSQSPFVYNNILSMYARCGSLTDSHLVFDKMPRRTIVSYNAL 85

Query: 124 ITCLDQQGCCQ--EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           +    +        A +++  M  + ++P+    TSL++A++       G S+HA   K 
Sbjct: 86  LAAYSRASPNHAISALELYTQMVTNGLRPSSTTFTSLLQASSLLEHWWFGSSLHAKGFKL 145

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G  +D  +  +L++MY   G +S    VF  +  +D V+WN+L   +      ++G+ +F
Sbjct: 146 GL-NDICLQTSLLNMYSNCGDLSSAELVFWDMVDRDHVAWNSLIMGYLKNNKIEEGIWLF 204

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M+  GF P   T+ ++L +CS L D   G+ +HAH I  ++  +  +  +LVDMY  +
Sbjct: 205 IKMMSVGFAPTQFTYCMVLNSCSRLKDYRSGRLIHAHVIVRNVSLDLHLQNALVDMYCNA 264

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR-LEGIKSNEFTLASC 360
           G ++ A   F  + N DL ++ ++I  Y++  + E A+  F +++ +   K +++T A  
Sbjct: 265 GNMQTAYRIFSRMENPDLVSWNSMIAGYSENEDGEKAMNLFVQLQEMCFPKPDDYTYAGI 324

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           ++      + + G+ LH+  +KTG    +FV + LV+MY K    D A  VF   +++D 
Sbjct: 325 ISATGVFPSSSYGKSLHAEVIKTGFERSVFVGSTLVSMYFKNHESDAAWRVFCSISVKDV 384

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK-KHFS 479
             W  MI GY K   G  A+  F  M+ EG+  D+     V++AC+++ ++ +G+  H  
Sbjct: 385 VLWTEMITGYSKMTDGICAIRCFFQMVHEGHEVDDYVLSGVVNACANLAVLRQGEIIHCY 444

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           ++K  Y +  ++     +ID+  + G   E    +      P+   W ++LG  S HG +
Sbjct: 445 AVKLGYDVEMSVS--GSLIDMYAKNGSL-EAAYLVFSQVSEPDLKCWNSMLGGYSHHGMV 501

Query: 540 ELDEKDAEKLLE 551
           E   +  E++L+
Sbjct: 502 EEALQVFEEILK 513



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 112/413 (27%), Positives = 214/413 (51%), Gaps = 1/413 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF  M + + V+WN+L+ GY ++   ++ + LF  M  +    ++F+   VL   + 
Sbjct: 169 AELVFWDMVDRDHVAWNSLIMGYLKNNKIEEGIWLFIKMMSVGFAPTQFTYCMVLNSCSR 228

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
               ++G+++HA  I    +LD  L  +LVDMY   G    A ++F R+++PD+V+W ++
Sbjct: 229 LKDYRSGRLIHAHVIVRNVSLDLHLQNALVDMYCNAGNMQTAYRIFSRMENPDLVSWNSM 288

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSV-KPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I    +    ++A  +F  ++E    KP+ +    ++ AT        G+S+HA + K G
Sbjct: 289 IAGYSENEDGEKAMNLFVQLQEMCFPKPDDYTYAGIISATGVFPSSSYGKSLHAEVIKTG 348

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           FE    VG+ LVSMY +N       RVF +I+ +D V W  + + +         +R F+
Sbjct: 349 FERSVFVGSTLVSMYFKNHESDAAWRVFCSISVKDVVLWTEMITGYSKMTDGICAIRCFF 408

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           QM+ +G + +      ++ AC++L+ +  G+ +H + +K   D    V  SL+DMY K+G
Sbjct: 409 QMVHEGHEVDDYVLSGVVNACANLAVLRQGEIIHCYAVKLGYDVEMSVSGSLIDMYAKNG 468

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            LE A + F  ++  DL  + +++  Y+  G  E AL+ F ++  +G+  ++ T  S L+
Sbjct: 469 SLEAAYLVFSQVSEPDLKCWNSMLGGYSHHGMVEEALQVFEEILKQGLIPDQVTFLSLLS 528

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
            CS    +  G+ L +     G +  +   + +V ++++   +++AE +   S
Sbjct: 529 ACSHSRLVEQGKFLWNYMNSIGLIPGLKHYSCMVTLFSRAALLEEAEEIINKS 581



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/315 (30%), Positives = 157/315 (49%), Gaps = 9/315 (2%)

Query: 157 SLVRATTETGDQRCGESIHAVI--CKYGFESDT-LVGNALVSMYMENGRVSYGSRVFEAI 213
           SL++  +     R    +HA+I      F S +  V N ++SMY   G ++    VF+ +
Sbjct: 15  SLLQKCSTVTSLREARQLHALILTTTTAFTSQSPFVYNNILSMYARCGSLTDSHLVFDKM 74

Query: 214 AHQDSVSWNALFSRFQDYESPDQ---GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVG 270
             +  VS+NAL + +    SP+     L ++ QM+  G +P+  TF  +L+A S L    
Sbjct: 75  PRRTIVSYNALLAAYSR-ASPNHAISALELYTQMVTNGLRPSSTTFTSLLQASSLLEHWW 133

Query: 271 FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
           FG  LHA   K  L+ +  + TSL++MY   G L  A + F  + ++D  A+ ++I  Y 
Sbjct: 134 FGSSLHAKGFKLGLN-DICLQTSLLNMYSNCGDLSSAELVFWDMVDRDHVAWNSLIMGYL 192

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
           +  + E  +  F KM   G    +FT    LN CS +    +GRL+H+  +     LD+ 
Sbjct: 193 KNNKIEEGIWLFIKMMSVGFAPTQFTYCMVLNSCSRLKDYRSGRLIHAHVIVRNVSLDLH 252

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
           +  ALV MY   G++  A  +F      D  SWN MI GY ++  GEKA+  F  + +  
Sbjct: 253 LQNALVDMYCNAGNMQTAYRIFSRMENPDLVSWNSMIAGYSENEDGEKAMNLFVQLQEMC 312

Query: 451 YV-PDEITFVVVLSA 464
           +  PD+ T+  ++SA
Sbjct: 313 FPKPDDYTYAGIISA 327



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 158/313 (50%), Gaps = 11/313 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDM-EKKFSKFSLSTVLK 59
           M+ A R+F  M   ++VSWN+++ GY+E+ DG+K M+LF  +++M   K   ++ + ++ 
Sbjct: 267 MQTAYRIFSRMENPDLVSWNSMIAGYSENEDGEKAMNLFVQLQEMCFPKPDDYTYAGIIS 326

Query: 60  G---FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD 116
               F +S Y   G+ +HA  I+ G     F+  +LV MY K   +D A +VF  I   D
Sbjct: 327 ATGVFPSSSY---GKSLHAEVIKTGFERSVFVGSTLVSMYFKNHESDAAWRVFCSISVKD 383

Query: 117 VVAWGAIITCLDQ--QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
           VV W  +IT   +   G C  A + F  M     + + +VL+ +V A       R GE I
Sbjct: 384 VVLWTEMITGYSKMTDGIC--AIRCFFQMVHEGHEVDDYVLSGVVNACANLAVLRQGEII 441

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H    K G++ +  V  +L+ MY +NG +     VF  ++  D   WN++   +  +   
Sbjct: 442 HCYAVKLGYDVEMSVSGSLIDMYAKNGSLEAAYLVFSQVSEPDLKCWNSMLGGYSHHGMV 501

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
           ++ L++F ++L +G  P+  TF+ +L ACS    V  GK L  +     L       + +
Sbjct: 502 EEALQVFEEILKQGLIPDQVTFLSLLSACSHSRLVEQGKFLWNYMNSIGLIPGLKHYSCM 561

Query: 295 VDMYDKSGCLEDA 307
           V ++ ++  LE+A
Sbjct: 562 VTLFSRAALLEEA 574



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 157/323 (48%), Gaps = 22/323 (6%)

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSL---DGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
           +L+ CS+++ +   +QLHA  +  +      +  V  +++ MY + G L D+ + FD + 
Sbjct: 16  LLQKCSTVTSLREARQLHALILTTTTAFTSQSPFVYNNILSMYARCGSLTDSHLVFDKMP 75

Query: 316 NKDLFAYTAIITSYAQA--GEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG 373
            + + +Y A++ +Y++A    A  AL+ + +M   G++ +  T  S L   S +     G
Sbjct: 76  RRTIVSYNALLAAYSRASPNHAISALELYTQMVTNGLRPSSTTFTSLLQASSLLEHWWFG 135

Query: 374 RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKH 433
             LH+   K G L D+ + T+L+ MY+ CG +  AE VF     RD  +WN +I GY+K+
Sbjct: 136 SSLHAKGFKLG-LNDICLQTSLLNMYSNCGDLSSAELVFWDMVDRDHVAWNSLIMGYLKN 194

Query: 434 GLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKH 493
              E+ +  F  M+  G+ P + T+ +VL++CS +     G+   + +  +  ++  +  
Sbjct: 195 NKIEEGIWLFIKMMSVGFAPTQFTYCMVLNSCSRLKDYRSGRLIHAHV-IVRNVSLDLHL 253

Query: 494 FACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELE 553
              ++D+   AG         +  +  P+ + W +++   S       + +D EK + L 
Sbjct: 254 QNALVDMYCNAGNMQTAYRIFSRME-NPDLVSWNSMIAGYS-------ENEDGEKAMNLF 305

Query: 554 PKMES-------NYVFPSDISAT 569
            +++        +Y +   ISAT
Sbjct: 306 VQLQEMCFPKPDDYTYAGIISAT 328



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 5/113 (4%)

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLL---DMFVSTALVAMYAKCGSIDDAEAVFKGS 415
           S L  CS V +L   R LH++ + T         FV   +++MYA+CGS+ D+  VF   
Sbjct: 15  SLLQKCSTVTSLREARQLHALILTTTTAFTSQSPFVYNNILSMYARCGSLTDSHLVFDKM 74

Query: 416 ALRDTASWNMMIGGYVKHGLGE--KALEAFRMMLDEGYVPDEITFVVVLSACS 466
             R   S+N ++  Y +        ALE +  M+  G  P   TF  +L A S
Sbjct: 75  PRRTIVSYNALLAAYSRASPNHAISALELYTQMVTNGLRPSSTTFTSLLQASS 127


>gi|302793632|ref|XP_002978581.1| hypothetical protein SELMODRAFT_109016 [Selaginella moellendorffii]
 gi|300153930|gb|EFJ20567.1| hypothetical protein SELMODRAFT_109016 [Selaginella moellendorffii]
          Length = 785

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 178/568 (31%), Positives = 304/568 (53%), Gaps = 3/568 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ +F SM E ++++WNAL+  Y + G  ++ + L+  M     K  K +   +L  
Sbjct: 212 LEDARAIFSSMVERDIIAWNALITEYGQHGHVEEAVLLYQLMLQEGCKPDKVTFVALLTM 271

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 +   ++VH+  +  G +++  L  +LV MYSKC   ++   +F ++   +V++W
Sbjct: 272 SNGPEALTEVKLVHSHIVESGVSINIALGTALVAMYSKCESLEDTRWLFEKMPQRNVISW 331

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             ++T   + G  ++A +I   M+   VKP+      L+   T + D + G  +H  I +
Sbjct: 332 NVMVTAYAKHGLGRKAVQITEYMQLDGVKPDNVTCVGLLNVCTGSADLKLGRKVHGWIAE 391

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              E+D ++ N+L++MY   G V     VF+ I  ++ +SW A+ + +      D  L +
Sbjct: 392 GRCEADLILWNSLLNMYGRCGEVEQAEMVFDGILQRNVISWTAMLTAYSRQNRQDMALLL 451

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F+ + L G KP   TF+  L AC     +  G+ +H+  ++   D +  +G++LV MY +
Sbjct: 452 FHAIHLSGVKPTCITFLEALDACVGAEALDKGRLVHSCAVQSGNDIDVSLGSALVAMYGR 511

Query: 301 SGCLEDAGVAFDSL-ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
            G + DA   FD     K+   ++A+I ++ Q G+    L+  R M+ +G+  +  T AS
Sbjct: 512 CGSIRDAKACFDDTEVRKNHVTWSAMIAAFVQHGQDREGLQHLRFMQQQGLDMSPATFAS 571

Query: 360 CLNGCSPVATLANGRLLHS-IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
            L+ CS +A L  G+ +HS +  +        V+ +LV MY KCGS+D A  VF+ S  +
Sbjct: 572 TLSACSNLADLREGKRIHSYVRERRFDTEAATVTNSLVTMYGKCGSLDCAREVFETSRRQ 631

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           DT  WN +I GY +H     A+E F  M  EG  PD +TFV +LS CSH GL++EG   +
Sbjct: 632 DTICWNAIISGYAQHSQTRDAVELFHRMQQEGVAPDPVTFVCILSVCSHGGLLDEGVYAY 691

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           +S+ ++ G+ PT  ++AC+ID+LGRAGK  E E FI      P      +LL +C  HG+
Sbjct: 692 ASMVEL-GLEPTQDNYACVIDLLGRAGKLQEAEEFIQSLGTRPAIETLTSLLSSCKSHGD 750

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDI 566
           ++   + AE ++E++P+  S +V  S I
Sbjct: 751 VQRGRRAAEGIMEMDPRSSSAHVVLSSI 778



 Score =  270 bits (690), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 158/570 (27%), Positives = 299/570 (52%), Gaps = 20/570 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQ--KVMHLFCSMKDMEKKFSKF-SLSTVLKG 60
           AKRVF +MP  NV++W A++  +A +   Q  KV  L     ++E   S F +  T+++ 
Sbjct: 115 AKRVFDAMPARNVITWTAMIGAHAVTSLEQAFKVFRLM----ELEGFKSNFVTYVTLVQA 170

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +   +++ G ++H  ++    A++  L  +L+ MY +CG  ++A  +F  + + D++AW
Sbjct: 171 CSKPEFLEVGIILHMRSVESSSAMETPLCNALITMYGRCGRLEDARAIFSSMVERDIIAW 230

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES--IHAVI 178
            A+IT   Q G  +EA  ++ LM +   KP++    +L+  T   G +   E   +H+ I
Sbjct: 231 NALITEYGQHGHVEEAVLLYQLMLQEGCKPDKVTFVALL--TMSNGPEALTEVKLVHSHI 288

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            + G   +  +G ALV+MY +   +     +FE +  ++ +SWN + + +  +    + +
Sbjct: 289 VESGVSINIALGTALVAMYSKCESLEDTRWLFEKMPQRNVISWNVMVTAYAKHGLGRKAV 348

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           +I   M L G KP+  T + +L  C+  +D+  G+++H    +   + + ++  SL++MY
Sbjct: 349 QITEYMQLDGVKPDNVTCVGLLNVCTGSADLKLGRKVHGWIAEGRCEADLILWNSLLNMY 408

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            + G +E A + FD +  +++ ++TA++T+Y++    +MAL  F  + L G+K    T  
Sbjct: 409 GRCGEVEQAEMVFDGILQRNVISWTAMLTAYSRQNRQDMALLLFHAIHLSGVKPTCITFL 468

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
             L+ C     L  GRL+HS AV++G+ +D+ + +ALVAMY +CGSI DA+A F  + +R
Sbjct: 469 EALDACVGAEALDKGRLVHSCAVQSGNDIDVSLGSALVAMYGRCGSIRDAKACFDDTEVR 528

Query: 419 -DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
            +  +W+ MI  +V+HG   + L+  R M  +G      TF   LSACS++  + EGK+ 
Sbjct: 529 KNHVTWSAMIAAFVQHGQDREGLQHLRFMQQQGLDMSPATFASTLSACSNLADLREGKRI 588

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
            S +++    T        ++ + G+ G   +    + ET    + + W  ++   + H 
Sbjct: 589 HSYVRERRFDTEAATVTNSLVTMYGKCGSL-DCAREVFETSRRQDTICWNAIISGYAQHS 647

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDIS 567
                 +DA   +EL  +M+   V P  ++
Sbjct: 648 QT----RDA---VELFHRMQQEGVAPDPVT 670



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 138/523 (26%), Positives = 249/523 (47%), Gaps = 25/523 (4%)

Query: 32  GQKVMHLF--C-SMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRL-------G 81
           G  ++H +  C S+ D  + F + S   V    A  G + A    H++AI L       G
Sbjct: 33  GNHLIHTYGKCHSLDDAWETFERMSYKNVYTWTAIIG-VCAQHHCHSLAIILLRQMLLEG 91

Query: 82  CALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII-----TCLDQQGCCQEA 136
              D     + + MY  CG  D+A +VF  +   +V+ W A+I     T L+Q      A
Sbjct: 92  VKPDNITLLAALTMYGSCGSVDDAKRVFDAMPARNVITWTAMIGAHAVTSLEQ------A 145

Query: 137 AKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSM 196
            K+F LM     K N     +LV+A ++      G  +H    +     +T + NAL++M
Sbjct: 146 FKVFRLMELEGFKSNFVTYVTLVQACSKPEFLEVGIILHMRSVESSSAMETPLCNALITM 205

Query: 197 YMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTF 256
           Y   GR+     +F ++  +D ++WNAL + +  +   ++ + ++  ML +G KP+  TF
Sbjct: 206 YGRCGRLEDARAIFSSMVERDIIAWNALITEYGQHGHVEEAVLLYQLMLQEGCKPDKVTF 265

Query: 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
           + +L   +    +   K +H+H ++  +  N  +GT+LV MY K   LED    F+ +  
Sbjct: 266 VALLTMSNGPEALTEVKLVHSHIVESGVSINIALGTALVAMYSKCESLEDTRWLFEKMPQ 325

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL 376
           +++ ++  ++T+YA+ G    A++    M+L+G+K +  T    LN C+  A L  GR +
Sbjct: 326 RNVISWNVMVTAYAKHGLGRKAVQITEYMQLDGVKPDNVTCVGLLNVCTGSADLKLGRKV 385

Query: 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
           H    +     D+ +  +L+ MY +CG ++ AE VF G   R+  SW  M+  Y +    
Sbjct: 386 HGWIAEGRCEADLILWNSLLNMYGRCGEVEQAEMVFDGILQRNVISWTAMLTAYSRQNRQ 445

Query: 437 EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK-KHFSSIKKIYGITPTIKHFA 495
           + AL  F  +   G  P  ITF+  L AC     +++G+  H  +++    I  ++   +
Sbjct: 446 DMALLLFHAIHLSGVKPTCITFLEALDACVGAEALDKGRLVHSCAVQSGNDIDVSLG--S 503

Query: 496 CMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            ++ + GR G   + +    +T++  N + W  ++ A   HG 
Sbjct: 504 ALVAMYGRCGSIRDAKACFDDTEVRKNHVTWSAMIAAFVQHGQ 546



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 132/462 (28%), Positives = 218/462 (47%), Gaps = 38/462 (8%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           +H+  +R       FL   L+  Y KC   D+A + F R+   +V  W AII    Q  C
Sbjct: 17  LHSQIVRASLDNRVFLGNHLIHTYGKCHSLDDAWETFERMSYKNVYTWTAIIGVCAQHHC 76

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
              A  +   M    VKP+   L                                    A
Sbjct: 77  HSLAIILLRQMLLEGVKPDNITLL-----------------------------------A 101

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
            ++MY   G V    RVF+A+  ++ ++W A+        S +Q  ++F  M L+GFK N
Sbjct: 102 ALTMYGSCGSVDDAKRVFDAMPARNVITWTAMIGA-HAVTSLEQAFKVFRLMELEGFKSN 160

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
             T++ +++ACS    +  G  LH  +++ S      +  +L+ MY + G LEDA   F 
Sbjct: 161 FVTYVTLVQACSKPEFLEVGIILHMRSVESSSAMETPLCNALITMYGRCGRLEDARAIFS 220

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
           S+  +D+ A+ A+IT Y Q G  E A+  ++ M  EG K ++ T  + L   +    L  
Sbjct: 221 SMVERDIIAWNALITEYGQHGHVEEAVLLYQLMLQEGCKPDKVTFVALLTMSNGPEALTE 280

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
            +L+HS  V++G  +++ + TALVAMY+KC S++D   +F+    R+  SWN+M+  Y K
Sbjct: 281 VKLVHSHIVESGVSINIALGTALVAMYSKCESLEDTRWLFEKMPQRNVISWNVMVTAYAK 340

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK 492
           HGLG KA++    M  +G  PD +T V +L+ C+    ++ G+K    I +       I 
Sbjct: 341 HGLGRKAVQITEYMQLDGVKPDNVTCVGLLNVCTGSADLKLGRKVHGWIAEGRCEADLIL 400

Query: 493 HFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
            +  ++++ GR G+  + E  + +  L  N + W  +L A S
Sbjct: 401 -WNSLLNMYGRCGEVEQAE-MVFDGILQRNVISWTAMLTAYS 440



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 179/394 (45%), Gaps = 45/394 (11%)

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           +H+ I +   ++   +GN L+  Y +   +      FE +++++  +W A+      +  
Sbjct: 17  LHSQIVRASLDNRVFLGNHLIHTYGKCHSLDDAWETFERMSYKNVYTWTAIIGVCAQHHC 76

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
               + +  QMLL+G KP+  T +  L                                 
Sbjct: 77  HSLAIILLRQMLLEGVKPDNITLLAALT-------------------------------- 104

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
              MY   G ++DA   FD++  +++  +TA+I ++A     E A K FR M LEG KSN
Sbjct: 105 ---MYGSCGSVDDAKRVFDAMPARNVITWTAMIGAHA-VTSLEQAFKVFRLMELEGFKSN 160

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
             T  + +  CS    L  G +LH  +V++   ++  +  AL+ MY +CG ++DA A+F 
Sbjct: 161 FVTYVTLVQACSKPEFLEVGIILHMRSVESSSAMETPLCNALITMYGRCGRLEDARAIFS 220

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
               RD  +WN +I  Y +HG  E+A+  +++ML EG  PD++TFV +L+  +    + E
Sbjct: 221 SMVERDIIAWNALITEYGQHGHVEEAVLLYQLMLQEGCKPDKVTFVALLTMSNGPEALTE 280

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
            K   S I +  G++  I     ++ +  +     E   ++ E     N + W  ++ A 
Sbjct: 281 VKLVHSHIVE-SGVSINIALGTALVAMYSKCESL-EDTRWLFEKMPQRNVISWNVMVTAY 338

Query: 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           + HG          K +++   M+ + V P +++
Sbjct: 339 AKHGL-------GRKAVQITEYMQLDGVKPDNVT 365



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 131/284 (46%), Gaps = 42/284 (14%)

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKD 318
           +L+AC  +  +   ++LH+  ++ SLD    +G  L+  Y K   L+DA   F+ ++ K+
Sbjct: 1   LLQACPKVKALDVARRLHSQIVRASLDNRVFLGNHLIHTYGKCHSLDDAWETFERMSYKN 60

Query: 319 LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHS 378
           ++ +TAII   AQ     +A+   R+M LEG+K +  TL + L                 
Sbjct: 61  VYTWTAIIGVCAQHHCHSLAIILLRQMLLEGVKPDNITLLAALT---------------- 104

Query: 379 IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEK 438
                              MY  CGS+DDA+ VF     R+  +W  MIG +    L E+
Sbjct: 105 -------------------MYGSCGSVDDAKRVFDAMPARNVITWTAMIGAHAVTSL-EQ 144

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG-KKHFSSIKKIYGI-TPTIKHFAC 496
           A + FR+M  EG+  + +T+V ++ ACS    +E G   H  S++    + TP       
Sbjct: 145 AFKVFRLMELEGFKSNFVTYVTLVQACSKPEFLEVGIILHMRSVESSSAMETPLCN---A 201

Query: 497 MIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +I + GR G+  E    I  + +  + + W  L+     HG++E
Sbjct: 202 LITMYGRCGRL-EDARAIFSSMVERDIIAWNALITEYGQHGHVE 244



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 97/228 (42%), Gaps = 11/228 (4%)

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L  C  V  L   R LHS  V+      +F+   L+  Y KC S+DDA   F+  + ++ 
Sbjct: 2   LQACPKVKALDVARRLHSQIVRASLDNRVFLGNHLIHTYGKCHSLDDAWETFERMSYKNV 61

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            +W  +IG   +H     A+   R ML EG  PD IT +  L+     G +++ K+ F +
Sbjct: 62  YTWTAIIGVCAQHHCHSLAIILLRQMLLEGVKPDNITLLAALTMYGSCGSVDDAKRVFDA 121

Query: 481 IKKIYGITPTIKHFACMIDILGRAGK---FTEIENFITETKLTPNALVWENLLGACSWHG 537
           +     IT T    A  +  L +A K     E+E F        N + +  L+ ACS   
Sbjct: 122 MPARNVITWTAMIGAHAVTSLEQAFKVFRLMELEGF------KSNFVTYVTLVQACSKPE 175

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSS 585
            +E+      + +E    ME+     + +    GR       RA+ SS
Sbjct: 176 FLEVGIILHMRSVESSSAMETP--LCNALITMYGRCGRLEDARAIFSS 221


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 182/530 (34%), Positives = 286/530 (53%), Gaps = 3/530 (0%)

Query: 73  VHAMAIRLGCALDK-FLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQG 131
           +HA A+RLG      F S SLV  Y + G    A KVF  + + DV AW A+++ L +  
Sbjct: 89  LHACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNA 148

Query: 132 CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGN 191
              EA  +F  M    V  +   ++S++      GDQ     +H    K+G + +  V N
Sbjct: 149 RAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCN 208

Query: 192 ALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKP 251
           AL+ +Y + G +     VF  +  +D V+WN++ S  +        L++F  M   G  P
Sbjct: 209 ALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSP 268

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV-GTSLVDMYDKSGCLEDAGVA 310
           ++ T + +  A +   D    K LH + ++   D + ++ G ++VDMY K   +E A   
Sbjct: 269 DVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRM 328

Query: 311 FDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFTLASCLNGCSPVAT 369
           FDS+  +D  ++  +IT Y Q G A  A++ +  M + EG+K+ + T  S L   S +  
Sbjct: 329 FDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGA 388

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           L  G  +H++++K G  +D++V T L+ +YAKCG + +A  +F+    R T  WN +I G
Sbjct: 389 LQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISG 448

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITP 489
              HG G +AL  F  M  EG  PD +TFV +L+ACSH GL+++G+  F  ++  Y I P
Sbjct: 449 LGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVP 508

Query: 490 TIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKL 549
             KH+ACM D+LGRAG+  E  NFI    + P++ VW  LLGAC  HGN+E+ +  ++ L
Sbjct: 509 IAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVASQNL 568

Query: 550 LELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            EL+P+    YV  S++ A  G+W+    VR+L+  Q ++K P  S IEV
Sbjct: 569 FELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEV 618



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 136/464 (29%), Positives = 233/464 (50%), Gaps = 6/464 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A +VF  M E +V +WNA+L+G   +    + + LF  M          ++S+VL     
Sbjct: 122 AYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVL 181

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G      V+H  A++ G   + F+  +L+D+Y K G+ + A  VF+ ++  D+V W +I
Sbjct: 182 LGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSI 241

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+  +Q+G    A K+F  MR S V P+   L SL  A  + GD R  +S+H  + + G+
Sbjct: 242 ISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGW 301

Query: 184 ESDTLV-GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           + D ++ GNA+V MY +   +    R+F+++  QDSVSWN L + +      ++ +  + 
Sbjct: 302 DVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYG 361

Query: 243 QMLL-KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            M   +G K    TF+ +L A S L  +  G ++HA +IK  L+ +  VGT L+D+Y K 
Sbjct: 362 HMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKC 421

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G L +A + F+ +  +    + AII+     G    AL  F +M+ EGIK +  T  S L
Sbjct: 422 GKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLL 481

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVA-MYAKCGSIDDAEAVFKGSALR-D 419
             CS    +  GR    +   T  ++ +    A +A M  + G +D+A    +   ++ D
Sbjct: 482 AACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPD 541

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           +A W  ++G    HG  E    A + + +    P+ + + V++S
Sbjct: 542 SAVWGALLGACRIHGNVEMGKVASQNLFE--LDPENVGYYVLMS 583



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 98/179 (54%), Gaps = 1/179 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLK 59
           +E A+R+F SMP  + VSWN L+ GY ++G   + +  +  M+  E  K  + +  +VL 
Sbjct: 322 IEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLP 381

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
            +++ G ++ G  +HA++I++G  +D ++   L+D+Y+KCG    A+ +F ++       
Sbjct: 382 AYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGP 441

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           W AII+ L   G   EA  +F+ M++  +KP+     SL+ A +  G    G S   V+
Sbjct: 442 WNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVM 500


>gi|242093006|ref|XP_002436993.1| hypothetical protein SORBIDRAFT_10g014210 [Sorghum bicolor]
 gi|241915216|gb|EER88360.1| hypothetical protein SORBIDRAFT_10g014210 [Sorghum bicolor]
          Length = 698

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 185/603 (30%), Positives = 311/603 (51%), Gaps = 9/603 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-----KDMEKKFSKFSLSTVL 58
           A+R+F  M   N+VSW+ +++G A  G   +   LF  M     +    +   F L  ++
Sbjct: 80  ARRLFDEMSRRNLVSWSVVISGSARHGVLAEAFALFSHMLHGAGQGSWDRPDSFMLGALV 139

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
            G + + ++ AG  VHA   + G   D+ ++ +LVDMY+KCG  D++ + F       V+
Sbjct: 140 AGCSRARHVDAGVQVHACVAKFGVDEDESVAAALVDMYAKCGWVDSSWRAFTLAPQRSVL 199

Query: 119 AWGAIITCLDQQGCC---QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH 175
           +W ++I CL  QG       A  +F  M    V P     + +++          G  IH
Sbjct: 200 SWTSMIACLVNQGSSGYHDAAMLLFKKMLALKVWPTNVTFSCILKVFNTPDLLSVGMQIH 259

Query: 176 AVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD 235
             + K G E DT +G+AL++MY   G V   +R+   I H D  S  +L   +       
Sbjct: 260 GCLLKIGTEVDTALGSALMTMYGRCGGVDEIARLACRIRH-DVFSRTSLLGAYARNGYNA 318

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
           + + +F +M+L     +      +L+ CSS+  +   +++H + +K     + ++  +++
Sbjct: 319 EAIGVFKEMILTNMAIDQSAMTCLLQVCSSVGQLRMVREVHCYALKTFFKLDTLLLNAII 378

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
            +Y + G    A   F+ +  +D+ ++TA++T YAQ G  E  L  FR+M   G+ S  F
Sbjct: 379 TVYGRCGDTTSAETVFNLMEEQDIISWTALLTCYAQNGLDEEVLLFFREMLRRGLGSPVF 438

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
            + S L  CS  + LA G  +HS  VK G   D  V  ALV +YA CGS+  A  +F   
Sbjct: 439 CMTSVLRACSRTSNLAIGLQIHSRTVKLGIDDDNSVENALVTLYANCGSVQVALKIFNSM 498

Query: 416 ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           + RD  +WN ++  + +HG    A++ F +M +E   PD+ TFV +LS+CS MGL++EG 
Sbjct: 499 SNRDIVTWNALLTSFSQHGNEVAAIQLFDLMQEEEVCPDDYTFVGLLSSCSRMGLVKEGC 558

Query: 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
           ++F+ +K  Y + P + H+ CM+D+  RAG+F +  +FI      P+ ++WE LL +C  
Sbjct: 559 EYFNEMKAKYNLEPKMVHYTCMVDLFARAGRFCDAMDFIDAMPYEPDQILWEALLASCKI 618

Query: 536 HGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCS 595
           HGN+ L    A+K+LE+ P   S Y+  S I A+   W++    R +  +Q  +K+   S
Sbjct: 619 HGNLGLGRIAAKKILEITPHDYSAYITLSSIHASVDMWDEKCWNRTVFDTQQARKDTGRS 678

Query: 596 WIE 598
           WI+
Sbjct: 679 WID 681



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 140/526 (26%), Positives = 238/526 (45%), Gaps = 26/526 (4%)

Query: 74  HAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCC 133
           H +AI+LGC    FL  +L+  Y    +  +A ++F  +   ++V+W  +I+   + G  
Sbjct: 49  HGVAIKLGCIASTFLCNNLLHAYLSRSVPAHARRLFDEMSRRNLVSWSVVISGSARHGVL 108

Query: 134 QEAAKIFNLM-----RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTL 188
            EA  +F+ M     + S  +P+ F+L +LV   +       G  +HA + K+G + D  
Sbjct: 109 AEAFALFSHMLHGAGQGSWDRPDSFMLGALVAGCSRARHVDAGVQVHACVAKFGVDEDES 168

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP---DQGLRIFYQML 245
           V  ALV MY + G V    R F     +  +SW ++ +   +  S    D  + +F +ML
Sbjct: 169 VAAALVDMYAKCGWVDSSWRAFTLAPQRSVLSWTSMIACLVNQGSSGYHDAAMLLFKKML 228

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
                P   TF  ILK  ++   +  G Q+H   +K   + +  +G++L+ MY + G ++
Sbjct: 229 ALKVWPTNVTFSCILKVFNTPDLLSVGMQIHGCLLKIGTEVDTALGSALMTMYGRCGGVD 288

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
           +           D+F+ T+++ +YA+ G    A+  F++M L  +  ++  +   L  CS
Sbjct: 289 EIA-RLACRIRHDVFSRTSLLGAYARNGYNAEAIGVFKEMILTNMAIDQSAMTCLLQVCS 347

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
            V  L   R +H  A+KT   LD  +  A++ +Y +CG    AE VF     +D  SW  
Sbjct: 348 SVGQLRMVREVHCYALKTFFKLDTLLLNAIITVYGRCGDTTSAETVFNLMEEQDIISWTA 407

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIY 485
           ++  Y ++GL E+ L  FR ML  G          VL ACS    +  G +  S   K+ 
Sbjct: 408 LLTCYAQNGLDEEVLLFFREMLRRGLGSPVFCMTSVLRACSRTSNLAIGLQIHSRTVKL- 466

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKD 545
           GI         ++ +    G   ++   I  +    + + W  LL + S HGN    E  
Sbjct: 467 GIDDDNSVENALVTLYANCGS-VQVALKIFNSMSNRDIVTWNALLTSFSQHGN----EVA 521

Query: 546 AEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
           A +L +L   M+   V P D +        F G+ +  S  G+ KE
Sbjct: 522 AIQLFDL---MQEEEVCPDDYT--------FVGLLSSCSRMGLVKE 556



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 97/422 (22%), Positives = 182/422 (43%), Gaps = 28/422 (6%)

Query: 135 EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALV 194
           E ++     R +   P +  L +L+R+           S H V  K G  + T + N L+
Sbjct: 15  EYSQPLTAARAADAVPMRDPLAALLRSGGHP------HSAHGVAIKLGCIASTFLCNNLL 68

Query: 195 SMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF----- 249
             Y+     ++  R+F+ ++ ++ VSW+ + S    +    +   +F  ML         
Sbjct: 69  HAYLSRSVPAHARRLFDEMSRRNLVSWSVVISGSARHGVLAEAFALFSHMLHGAGQGSWD 128

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
           +P+      ++  CS    V  G Q+HA   K  +D +  V  +LVDMY K G ++ +  
Sbjct: 129 RPDSFMLGALVAGCSRARHVDAGVQVHACVAKFGVDEDESVAAALVDMYAKCGWVDSSWR 188

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEA---EMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           AF     + + ++T++I      G +   + A+  F+KM    +     T +  L   + 
Sbjct: 189 AFTLAPQRSVLSWTSMIACLVNQGSSGYHDAAMLLFKKMLALKVWPTNVTFSCILKVFNT 248

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
              L+ G  +H   +K G  +D  + +AL+ MY +CG +D+  A        D  S   +
Sbjct: 249 PDLLSVGMQIHGCLLKIGTEVDTALGSALMTMYGRCGGVDEI-ARLACRIRHDVFSRTSL 307

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIY 485
           +G Y ++G   +A+  F+ M+      D+     +L  CS +G +   ++ H  ++K  +
Sbjct: 308 LGAYARNGYNAEAIGVFKEMILTNMAIDQSAMTCLLQVCSSVGQLRMVREVHCYALKTFF 367

Query: 486 GITPTIKHFACMIDILGRAGKFTEIE---NFITETKLTPNALVWENLLGACSWHGNIELD 542
            +   +     +I + GR G  T  E   N + E  +    + W  LL   + +G   LD
Sbjct: 368 KLDTLL--LNAIITVYGRCGDTTSAETVFNLMEEQDI----ISWTALLTCYAQNG---LD 418

Query: 543 EK 544
           E+
Sbjct: 419 EE 420



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 83/175 (47%), Gaps = 7/175 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +++A ++F SM   ++V+WNALL  +++ G+    + LF  M++ E     ++   +L  
Sbjct: 488 VQVALKIFNSMSNRDIVTWNALLTSFSQHGNEVAAIQLFDLMQEEEVCPDDYTFVGLLSS 547

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            +  G +K G +  + M  +            +VD++++ G   +A+     +  +PD +
Sbjct: 548 CSRMGLVKEGCEYFNEMKAKYNLEPKMVHYTCMVDLFARAGRFCDAMDFIDAMPYEPDQI 607

Query: 119 AWGAIITCLDQQGCC---QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC 170
            W A++      G     + AAK   ++  +    + ++  S + A+ +  D++C
Sbjct: 608 LWEALLASCKIHGNLGLGRIAAK--KILEITPHDYSAYITLSSIHASVDMWDEKC 660


>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g35130, chloroplastic; Flags: Precursor
 gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
 gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
 gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 804

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 182/603 (30%), Positives = 320/603 (53%), Gaps = 6/603 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A ++F  M + +   WN ++ G+   G   + +  +  M     K   F+   V+K 
Sbjct: 80  MEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKS 139

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    ++ G+ +HAM I+LG   D ++  SL+ +Y K G A +A KVF  + + D+V+W
Sbjct: 140 VAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSW 199

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I+     G    +  +F  M +   KP++F   S + A +     + G+ IH    +
Sbjct: 200 NSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVR 259

Query: 181 YGFES-DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
              E+ D +V  +++ MY + G VSY  R+F  +  ++ V+WN +   +           
Sbjct: 260 SRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFL 319

Query: 240 IFYQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            F +M  + G +P++ T I +L A + L     G+ +H + ++     + V+ T+L+DMY
Sbjct: 320 CFQKMSEQNGLQPDVITSINLLPASAILE----GRTIHGYAMRRGFLPHMVLETALIDMY 375

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            + G L+ A V FD +A K++ ++ +II +Y Q G+   AL+ F+++    +  +  T+A
Sbjct: 376 GECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIA 435

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L   +   +L+ GR +H+  VK+ +  +  +  +LV MYA CG ++DA   F    L+
Sbjct: 436 SILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLK 495

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D  SWN +I  Y  HG G  ++  F  M+     P++ TF  +L+ACS  G+++EG ++F
Sbjct: 496 DVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACSISGMVDEGWEYF 555

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            S+K+ YGI P I+H+ CM+D++GR G F+  + F+ E    P A +W +LL A   H +
Sbjct: 556 ESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLEEMPFVPTARIWGSLLNASRNHKD 615

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           I + E  AE++ ++E      YV   ++ A  GRW D + ++ L+ S+GI +  S S +E
Sbjct: 616 ITIAEFAAEQIFKMEHDNTGCYVLLLNMYAEAGRWEDVNRIKLLMESKGISRTSSRSTVE 675

Query: 599 VDG 601
             G
Sbjct: 676 AKG 678



 Score =  208 bits (529), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 134/450 (29%), Positives = 226/450 (50%), Gaps = 20/450 (4%)

Query: 96  YSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVL 155
           ++   L ++AL++F  +   D   W  +I      G   EA + ++ M  + VK + F  
Sbjct: 74  FADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTY 133

Query: 156 TSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH 215
             ++++         G+ IHA++ K GF SD  V N+L+S+YM+ G      +VFE +  
Sbjct: 134 PFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPE 193

Query: 216 QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL 275
           +D VSWN++ S +         L +F +ML  GFKP+  + +  L ACS +     GK++
Sbjct: 194 RDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEI 253

Query: 276 HAHTIKHSLD-GNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGE 334
           H H ++  ++ G+ +V TS++DMY K G +  A   F+ +  +++ A+  +I  YA+ G 
Sbjct: 254 HCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGR 313

Query: 335 AEMALKCFRKMRLE-GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST 393
              A  CF+KM  + G++ +  T  + L    P + +  GR +H  A++ G L  M + T
Sbjct: 314 VTDAFLCFQKMSEQNGLQPDVITSINLL----PASAILEGRTIHGYAMRRGFLPHMVLET 369

Query: 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP 453
           AL+ MY +CG +  AE +F   A ++  SWN +I  YV++G    ALE F+ + D   VP
Sbjct: 370 ALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVP 429

Query: 454 DEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYG----ITPTIKHFACMIDILGRAGK-F 507
           D  T   +L A +    + EG++ H   +K  Y     I  ++ H   M   L  A K F
Sbjct: 430 DSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCF 489

Query: 508 TEIENFITETKLTPNALVWENLLGACSWHG 537
             I        L  + + W +++ A + HG
Sbjct: 490 NHI--------LLKDVVSWNSIIMAYAVHG 511



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 121/242 (50%), Gaps = 1/242 (0%)

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           +  S  +EDA   FD +   D F +  +I  +   G    A++ + +M   G+K++ FT 
Sbjct: 74  FADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTY 133

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
              +   + +++L  G+ +H++ +K G + D++V  +L+++Y K G   DAE VF+    
Sbjct: 134 PFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPE 193

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           RD  SWN MI GY+  G G  +L  F+ ML  G+ PD  + +  L ACSH+   + GK+ 
Sbjct: 194 RDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEI 253

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
                +    T  +     ++D+  + G+ +  E  I    +  N + W  ++G  + +G
Sbjct: 254 HCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAER-IFNGMIQRNIVAWNVMIGCYARNG 312

Query: 538 NI 539
            +
Sbjct: 313 RV 314


>gi|297824009|ref|XP_002879887.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297325726|gb|EFH56146.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1359

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 191/599 (31%), Positives = 314/599 (52%), Gaps = 3/599 (0%)

Query: 4    AKRVFKSMPEL-NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
            A RVF  + +  NVV WN ++ G+  S   +  + L+   K    K    S +  L   +
Sbjct: 723  AWRVFVEIEDKSNVVLWNVMIVGFGGSEICESSLELYMLAKSNSVKLVSTSFTGALGACS 782

Query: 63   NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
             S     G+ +H   +++G   D ++S SL+ MYSKCG+   A  VF  + D  +  W A
Sbjct: 783  QSENSAFGRQIHCDVVKMGLDNDPYVSTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNA 842

Query: 123  IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
            ++    +      A ++F  MR+ SV P+ F L++++   +  G    G+S+HA + K  
Sbjct: 843  MVAAYVENDNGYSALELFGFMRQKSVLPDSFTLSNVISCCSMFGLYDYGKSVHAELFKRP 902

Query: 183  FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
             +S   + +AL+++Y + G  +    VF+++  +D V+W +L S         + L++F 
Sbjct: 903  IQSTPAIESALLTLYSKCGCDTDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFG 962

Query: 243  QMLLK--GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
             M       KP+      ++ AC+ L  + FG Q+H   IK     N  VG+SL+D+Y K
Sbjct: 963  DMKDDDDSLKPDSDIMTSVINACAGLEALSFGLQVHGSMIKTGQVLNVFVGSSLIDLYSK 1022

Query: 301  SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
             G  E A   F S+  +++ A+ ++I+ Y++    E++++ F  M  +GI  +  ++ S 
Sbjct: 1023 CGLPEMALKVFTSMRPENIVAWNSMISCYSRNNLPELSIELFNLMLSQGIFPDSVSITSV 1082

Query: 361  LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
            L   S  A+L  G+ LH   ++ G   D  +  AL+ MY KCG    AE +FK    +  
Sbjct: 1083 LVAISSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSL 1142

Query: 421  ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
             +WN+MI GY  HG    AL  F  +   G  PD++TF+ ++SAC+H G +EEGK  F  
Sbjct: 1143 ITWNLMIYGYGSHGDCRTALSLFDELKKAGETPDDVTFLSLISACNHSGFVEEGKNFFEI 1202

Query: 481  IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
            +K+ YGI P ++H+A M+D+LGRAG+  E  +FI       ++ +W  LL A   H N+E
Sbjct: 1203 MKQDYGIEPKMEHYANMVDLLGRAGRLEEAYSFIKAMPTEADSSIWLCLLSASRTHHNVE 1262

Query: 541  LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            L    AEKLL +EP+  S YV   ++    G  N+ + +   +  +G++K+P CSWIEV
Sbjct: 1263 LGILSAEKLLRMEPERGSTYVQLINLYMEAGLKNEAAKLLGEMKERGLQKQPGCSWIEV 1321



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 150/564 (26%), Positives = 260/564 (46%), Gaps = 22/564 (3%)

Query: 18   SWNALLNGYAESGDGQKVMHLFCSMKDMEKKF-SKFSLSTVLKGFANSGYIKAGQVVHAM 76
            S N+ +    + G+  + +HL+         + S F+  ++LK  ++   + +G+ +H  
Sbjct: 527  SVNSGIRALIQKGEYLQALHLYTKHDGSSPLWTSVFTFPSLLKACSSLTNLSSGKTIHGS 586

Query: 77   AIRLGCALDKFLSCSLVDMYSKCGLADNALKVF-----YRIKDPDVVAWGAIITCLDQQG 131
             I LG   D F++ SLV+MY KCG  D A++VF       +   DV    ++I    +  
Sbjct: 587  IIVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSGVSARDVTVCNSMIDGYFKFR 646

Query: 132  CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC--GESIHAVICKYGFESDTLV 189
              +E    F  M    V+P+ F L+ +V    + G+ R   G+ IH  + +   + D+ +
Sbjct: 647  RFKEGVGCFRRMLVLGVRPDAFSLSIVVSVLCKEGNFRREDGKQIHGYMLRNSLDGDSFL 706

Query: 190  GNALVSMYMENGRVSYGSRVFEAIAHQDSVS-WNALFSRFQDYESPDQGLRIFYQMLLKG 248
              AL+ MY + G  +   RVF  I  + +V  WN +   F   E  +  L ++       
Sbjct: 707  KTALIDMYFKFGLSTDAWRVFVEIEDKSNVVLWNVMIVGFGGSEICESSLELYMLAKSNS 766

Query: 249  FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
             K    +F   L ACS   +  FG+Q+H   +K  LD +  V TSL+ MY K G + +A 
Sbjct: 767  VKLVSTSFTGALGACSQSENSAFGRQIHCDVVKMGLDNDPYVSTSLLSMYSKCGMVGEAE 826

Query: 309  VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
              F  + +K L  + A++ +Y +      AL+ F  MR + +  + FTL++ ++ CS   
Sbjct: 827  TVFSCVVDKRLEIWNAMVAAYVENDNGYSALELFGFMRQKSVLPDSFTLSNVISCCSMFG 886

Query: 369  TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
                G+ +H+   K        + +AL+ +Y+KCG   DA  VFK    +D  +W  +I 
Sbjct: 887  LYDYGKSVHAELFKRPIQSTPAIESALLTLYSKCGCDTDAYLVFKSMEEKDMVAWGSLIS 946

Query: 429  GYVKHGLGEKALEAFRMML--DEGYVPDEITFVVVLSACSHMGLIEEG-KKHFSSIKKIY 485
            G  K+G  ++AL+ F  M   D+   PD      V++AC+ +  +  G + H S IK   
Sbjct: 947  GLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVINACAGLEALSFGLQVHGSMIKT-- 1004

Query: 486  GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKD 545
            G    +   + +ID+  + G   E+   +  +    N + W +++   S +   EL    
Sbjct: 1005 GQVLNVFVGSSLIDLYSKCG-LPEMALKVFTSMRPENIVAWNSMISCYSRNNLPELS--- 1060

Query: 546  AEKLLELEPKMESNYVFPSDISAT 569
                +EL   M S  +FP  +S T
Sbjct: 1061 ----IELFNLMLSQGIFPDSVSIT 1080



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 116/239 (48%), Gaps = 2/239 (0%)

Query: 2    ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
            E+A +VF SM   N+V+WN++++ Y+ +   +  + LF  M          S+++VL   
Sbjct: 1027 EMALKVFTSMRPENIVAWNSMISCYSRNNLPELSIELFNLMLSQGIFPDSVSITSVLVAI 1086

Query: 62   ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
            +++  +  G+ +H   +RLG   D  L  +L+DMY KCG +  A  +F +++   ++ W 
Sbjct: 1087 SSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWN 1146

Query: 122  AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK- 180
             +I      G C+ A  +F+ ++++   P+     SL+ A   +G    G++   ++ + 
Sbjct: 1147 LMIYGYGSHGDCRTALSLFDELKKAGETPDDVTFLSLISACNHSGFVEEGKNFFEIMKQD 1206

Query: 181  YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-DSVSWNALFSRFQDYESPDQGL 238
            YG E        +V +    GR+       +A+  + DS  W  L S  + + + + G+
Sbjct: 1207 YGIEPKMEHYANMVDLLGRAGRLEEAYSFIKAMPTEADSSIWLCLLSASRTHHNVELGI 1265


>gi|242039301|ref|XP_002467045.1| hypothetical protein SORBIDRAFT_01g018760 [Sorghum bicolor]
 gi|241920899|gb|EER94043.1| hypothetical protein SORBIDRAFT_01g018760 [Sorghum bicolor]
          Length = 564

 Score =  324 bits (831), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 191/538 (35%), Positives = 286/538 (53%), Gaps = 5/538 (0%)

Query: 62  ANSGYIKAGQVVHAMAIRLGCA-LDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +G I+ G+ +HA  +  G A    FL+  L+ MYS C  A +A++VF  +  P+ V+W
Sbjct: 28  GRTGDIRRGRALHARLLLTGAAATSTFLANHLITMYSYCADAASAVRVFGVLPRPNPVSW 87

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +++ L Q     +A   F  MR + V P QF L+S  RA       R G  +H +  +
Sbjct: 88  TTLVSGLVQNSMHHDALAAFAAMRRAHVAPTQFALSSAARAAAALSAPRPGTQLHCIGTR 147

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +GF+++  V + L  MY + G +    RVF+ + H+D+V+W  +   +    S    +  
Sbjct: 148 FGFDTELFVASNLADMYSKCGLLDEACRVFDQMPHRDAVTWTTMIDGYAKNGSLKAAILA 207

Query: 241 FYQMLLKGF-KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           F  M  +G    +   F   L A   L D  FG+ LH   IK   +   VV  +L+DMY 
Sbjct: 208 FRDMKCEGLVGADQHVFCSALSASGGLKDGWFGRSLHCCIIKAGFELETVVRNALLDMYA 267

Query: 300 KSGCLEDAG--VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           KSG LE A   V  D     ++ + T++I  Y +    E AL+ + ++  +G++ NEFT 
Sbjct: 268 KSGDLESASRVVKIDP-GGWNVVSGTSLIDGYIEVDRIEEALETYTELGRQGVEPNEFTF 326

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           AS + GC+    L  G  LH+  +KT  + D FV + LV MY KCG I  +  +F     
Sbjct: 327 ASMIKGCAMQDLLEQGAQLHAQVIKTSLISDSFVGSTLVYMYGKCGLISLSLQLFNEIGY 386

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
               +WN +I  Y +HG G  A++AF  M   G  P+ ITFV +L+ACSH GL++EG ++
Sbjct: 387 HSEVAWNAVINVYAQHGHGWGAIQAFDRMTASGIRPNHITFVCLLTACSHAGLVDEGLEY 446

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F S+K  +GI P  +H++C+ID+ GRAG+  E E FI+E  + PNA  W +LLGAC   G
Sbjct: 447 FYSMKDAHGIEPKEEHYSCIIDMYGRAGRLDEAEKFISEMPVKPNAYGWCSLLGACRMRG 506

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCS 595
           N EL E  A+ L++L+P     +V  S I A+ G+W D   VR L+    IK  P  S
Sbjct: 507 NKELGEIAAQNLMKLDPDNTGIHVSLSGIYASLGQWEDAKSVRKLMKDSSIKNLPGFS 564



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 151/508 (29%), Positives = 235/508 (46%), Gaps = 38/508 (7%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A RVF  +P  N VSW  L++G  ++      +  F +M+      ++F+LS+  +  A 
Sbjct: 72  AVRVFGVLPRPNPVSWTTLVSGLVQNSMHHDALAAFAAMRRAHVAPTQFALSSAARAAAA 131

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
               + G  +H +  R G   + F++ +L DMYSKCGL D A +VF ++   D V W  +
Sbjct: 132 LSAPRPGTQLHCIGTRFGFDTELFVASNLADMYSKCGLLDEACRVFDQMPHRDAVTWTTM 191

Query: 124 ITCLDQQGCCQEAAKIFNLMR-ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I    + G  + A   F  M+ E  V  +Q V  S + A+    D   G S+H  I K G
Sbjct: 192 IDGYAKNGSLKAAILAFRDMKCEGLVGADQHVFCSALSASGGLKDGWFGRSLHCCIIKAG 251

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWN-----ALFSRFQDYESPDQG 237
           FE +T+V NAL+ MY ++G +   SRV +     D   WN     +L   + + +  ++ 
Sbjct: 252 FELETVVRNALLDMYAKSGDLESASRVVKI----DPGGWNVVSGTSLIDGYIEVDRIEEA 307

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           L  + ++  +G +PN  TF  ++K C+    +  G QLHA  IK SL  +  VG++LV M
Sbjct: 308 LETYTELGRQGVEPNEFTFASMIKGCAMQDLLEQGAQLHAQVIKTSLISDSFVGSTLVYM 367

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K G +  +   F+ +      A+ A+I  YAQ G    A++ F +M   GI+ N  T 
Sbjct: 368 YGKCGLISLSLQLFNEIGYHSEVAWNAVINVYAQHGHGWGAIQAFDRMTASGIRPNHITF 427

Query: 358 ASCLNGCSPVATLANG-------RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
              L  CS    +  G       +  H I  K  H       + ++ MY + G +D+AE 
Sbjct: 428 VCLLTACSHAGLVDEGLEYFYSMKDAHGIEPKEEHY------SCIIDMYGRAGRLDEAEK 481

Query: 411 VFKGSALRDTA-SWNMMIGGYVKHG---LGEKALEAFRMMLDEGYVPDEITFVVVLSAC- 465
                 ++  A  W  ++G     G   LGE A +   M LD    PD     V LS   
Sbjct: 482 FISEMPVKPNAYGWCSLLGACRMRGNKELGEIAAQNL-MKLD----PDNTGIHVSLSGIY 536

Query: 466 SHMGLIEEGKK-----HFSSIKKIYGIT 488
           + +G  E+ K        SSIK + G +
Sbjct: 537 ASLGQWEDAKSVRKLMKDSSIKNLPGFS 564



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 159/319 (49%), Gaps = 21/319 (6%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMK-------DMEKKFSKFS 53
           ++ A RVF  MP  + V+W  +++GYA++G  +  +  F  MK       D     S  S
Sbjct: 170 LDEACRVFDQMPHRDAVTWTTMIDGYAKNGSLKAAILAFRDMKCEGLVGADQHVFCSALS 229

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
            S  LK     G+   G+ +H   I+ G  L+  +  +L+DMY+K G  ++A +V  +I 
Sbjct: 230 ASGGLK----DGWF--GRSLHCCIIKAGFELETVVRNALLDMYAKSGDLESASRVV-KI- 281

Query: 114 DP---DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC 170
           DP   +VV+  ++I    +    +EA + +  +    V+PN+F   S+++          
Sbjct: 282 DPGGWNVVSGTSLIDGYIEVDRIEEALETYTELGRQGVEPNEFTFASMIKGCAMQDLLEQ 341

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
           G  +HA + K    SD+ VG+ LV MY + G +S   ++F  I +   V+WNA+ + +  
Sbjct: 342 GAQLHAQVIKTSLISDSFVGSTLVYMYGKCGLISLSLQLFNEIGYHSEVAWNAVINVYAQ 401

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACS--SLSDVGFGKQLHAHTIKHSLDGNH 288
           +      ++ F +M   G +PN  TF+ +L ACS   L D G  +  ++    H ++   
Sbjct: 402 HGHGWGAIQAFDRMTASGIRPNHITFVCLLTACSHAGLVDEGL-EYFYSMKDAHGIEPKE 460

Query: 289 VVGTSLVDMYDKSGCLEDA 307
              + ++DMY ++G L++A
Sbjct: 461 EHYSCIIDMYGRAGRLDEA 479



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 141/316 (44%), Gaps = 24/316 (7%)

Query: 261 KACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT----SLVDMYDKSGCLEDAGVAFDSLAN 316
           ++C    D+  G+ LHA  +   L G     T     L+ MY        A   F  L  
Sbjct: 25  QSCGRTGDIRRGRALHARLL---LTGAAATSTFLANHLITMYSYCADAASAVRVFGVLPR 81

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL 376
            +  ++T +++   Q      AL  F  MR   +   +F L+S     + ++    G  L
Sbjct: 82  PNPVSWTTLVSGLVQNSMHHDALAAFAAMRRAHVAPTQFALSSAARAAAALSAPRPGTQL 141

Query: 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
           H I  + G   ++FV++ L  MY+KCG +D+A  VF     RD  +W  MI GY K+G  
Sbjct: 142 HCIGTRFGFDTELFVASNLADMYSKCGLLDEACRVFDQMPHRDAVTWTTMIDGYAKNGSL 201

Query: 437 EKALEAFRMMLDEGYV-PDEITFVVVLSACSHMGLIEEG----KKHFSSIKKIYGITPTI 491
           + A+ AFR M  EG V  D+  F   LSA    G +++G      H   IK  + +   +
Sbjct: 202 KAAILAFRDMKCEGLVGADQHVFCSALSAS---GGLKDGWFGRSLHCCIIKAGFELETVV 258

Query: 492 KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551
           ++   ++D+  ++G   ++E+     K+ P    W  + G     G IE+D    E+ LE
Sbjct: 259 RN--ALLDMYAKSG---DLESASRVVKIDPGG--WNVVSGTSLIDGYIEVDR--IEEALE 309

Query: 552 LEPKMESNYVFPSDIS 567
              ++    V P++ +
Sbjct: 310 TYTELGRQGVEPNEFT 325



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 108/228 (47%), Gaps = 3/228 (1%)

Query: 1   MELAKRVFKSMPE-LNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           +E A RV K  P   NVVS  +L++GY E    ++ +  +  +     + ++F+ ++++K
Sbjct: 272 LESASRVVKIDPGGWNVVSGTSLIDGYIEVDRIEEALETYTELGRQGVEPNEFTFASMIK 331

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           G A    ++ G  +HA  I+     D F+  +LV MY KCGL   +L++F  I     VA
Sbjct: 332 GCAMQDLLEQGAQLHAQVIKTSLISDSFVGSTLVYMYGKCGLISLSLQLFNEIGYHSEVA 391

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG-ESIHAVI 178
           W A+I    Q G    A + F+ M  S ++PN      L+ A +  G    G E  +++ 
Sbjct: 392 WNAVINVYAQHGHGWGAIQAFDRMTASGIRPNHITFVCLLTACSHAGLVDEGLEYFYSMK 451

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSR-VFEAIAHQDSVSWNALF 225
             +G E      + ++ MY   GR+    + + E     ++  W +L 
Sbjct: 452 DAHGIEPKEEHYSCIIDMYGRAGRLDEAEKFISEMPVKPNAYGWCSLL 499


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  324 bits (830), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 195/621 (31%), Positives = 319/621 (51%), Gaps = 29/621 (4%)

Query: 6   RVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSG 65
           +VF  + + + VSWN+ +         ++ +  F +M+    + S F+L +V    +N G
Sbjct: 149 KVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLG 208

Query: 66  Y---IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
               ++ G+ +H  ++R+G     F + +L+ MY+K G  D++  +F    D D+V+W  
Sbjct: 209 VMHGLRLGKQLHGYSLRVG-DQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNT 267

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I+   Q     EA   F LM    V+ +   + S++ A +       G+ IHA + +  
Sbjct: 268 MISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNN 327

Query: 183 -FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
               ++ VG+ALV MY    +V  G RVF+ I  +    WNA+ S +      ++ L +F
Sbjct: 328 DLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILF 387

Query: 242 YQML-LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
            +M+ + G  PN  T   ++ AC         + +H + +K     +  V  +L+DMY +
Sbjct: 388 IEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSR 447

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGI--------- 350
            G ++ +   FDS+  +D  ++  +IT Y  +G    AL    +M R+E           
Sbjct: 448 MGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDND 507

Query: 351 -------KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403
                  K N  TL + L GC+ +A +A G+ +H+ A++     D+ V +ALV MYAKCG
Sbjct: 508 DEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCG 567

Query: 404 SIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG-----YVPDEITF 458
            ++ +  VF     ++  +WN++I     HG GE+ALE F+ M+ E        P+E+TF
Sbjct: 568 CLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTF 627

Query: 459 VVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK 518
           + V +ACSH GLI EG   F  +K  +G+ PT  H+AC++D+LGRAG+  E    +    
Sbjct: 628 ITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMP 687

Query: 519 LTPNAL-VWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFS 577
              + +  W +LLGAC  H N+EL E  A+ LL LEP + S+YV  S+I ++ G WN   
Sbjct: 688 AEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAM 747

Query: 578 GVRALLSSQGIKKEPSCSWIE 598
            VR  +   G+KKEP CSWIE
Sbjct: 748 EVRKNMRQMGVKKEPGCSWIE 768



 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 164/553 (29%), Positives = 264/553 (47%), Gaps = 28/553 (5%)

Query: 12  PELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQ 71
           P  +  SW   L     S D ++ +  +  M     +   F+   VLK  +    +K G+
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 72  VVHAMAIRLGCALDKF-LSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
            +HA A++ G       ++ +LV+MY KCG   +  KVF RI D D V+W + I  L + 
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRF 172

Query: 131 GCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG---DQRCGESIHAVICKYGFESDT 187
              ++A + F  M+  +++ + F L S+  A +  G     R G+ +H    + G +  T
Sbjct: 173 EKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVG-DQKT 231

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK 247
              NAL++MY + GRV     +FE+   +D VSWN + S F   +   + L  F  M+L+
Sbjct: 232 FTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLE 291

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS-LDGNHVVGTSLVDMYDKSGCLED 306
           G + +  T   +L ACS L  +  GK++HA+ ++++ L  N  VG++LVDMY     +E 
Sbjct: 292 GVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVES 351

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFTLASCLNGCS 365
               FD +  + +  + A+I+ YA+ G  E AL  F +M ++ G+  N  T+AS +  C 
Sbjct: 352 GRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACV 411

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
                +N   +H  AVK G   D +V  AL+ MY++ G +D +E +F    +RD  SWN 
Sbjct: 412 HCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNT 471

Query: 426 MIGGYVKHGLGEKAL----EAFRM-------------MLDEGYVPDEITFVVVLSACSHM 468
           MI GYV  G    AL    E  RM                  Y P+ IT + VL  C+ +
Sbjct: 472 MITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAAL 531

Query: 469 GLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWE 527
             I +GK+ H  +I+ +     T+   + ++D+  + G          E     N + W 
Sbjct: 532 AAIAKGKEIHAYAIRNMLASDITVG--SALVDMYAKCGCLNLSRRVFNEMP-NKNVITWN 588

Query: 528 NLLGACSWHGNIE 540
            L+ AC  HG  E
Sbjct: 589 VLIMACGMHGKGE 601



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 119/470 (25%), Positives = 223/470 (47%), Gaps = 38/470 (8%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           +K +F+S  + ++VSWN +++ +++S    + +  F  M     +    ++++VL   ++
Sbjct: 250 SKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSH 309

Query: 64  SGYIKAGQVVHAMAIRLGCALDK-FLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
              +  G+ +HA  +R    ++  F+  +LVDMY  C   ++  +VF  I    +  W A
Sbjct: 310 LERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNA 369

Query: 123 IITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           +I+   + G  ++A  +F  +++ + + PN   + S++ A          ESIH    K 
Sbjct: 370 MISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKL 429

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           GF+ D  V NAL+ MY   G++     +F+++  +D VSWN + + +         L + 
Sbjct: 430 GFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLL 489

Query: 242 YQMLLK-----------------GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL 284
           ++M                     +KPN  T + +L  C++L+ +  GK++HA+ I++ L
Sbjct: 490 HEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNML 549

Query: 285 DGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRK 344
             +  VG++LVDMY K GCL  +   F+ + NK++  +  +I +    G+ E AL+ F+ 
Sbjct: 550 ASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKN 609

Query: 345 MRLEG-----IKSNEFTLASCLNGCSPVATLANG-----RLLHSIAVKTGHLLDMFVSTA 394
           M  E       K NE T  +    CS    ++ G     R+ H   V+     D +    
Sbjct: 610 MVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTS--DHY--AC 665

Query: 395 LVAMYAKCGSIDDA-EAVFKGSALRD-TASWNMMIGGYVKHG---LGEKA 439
           +V +  + G +++A E V    A  D   +W+ ++G    H    LGE A
Sbjct: 666 VVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVA 715



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 152/335 (45%), Gaps = 32/335 (9%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKF-SKFSLSTVLK 59
           +E  +RVF  +    +  WNA+++GYA +G  +K + LF  M  +     +  ++++V+ 
Sbjct: 349 VESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMP 408

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
              +       + +H  A++LG   D+++  +L+DMYS+ G  D +  +F  ++  D V+
Sbjct: 409 ACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVS 468

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRE-----------------SSVKPNQFVLTSLVRAT 162
           W  +IT     G    A  + + M+                     KPN   L +++   
Sbjct: 469 WNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGC 528

Query: 163 TETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWN 222
                   G+ IHA   +    SD  VG+ALV MY + G ++   RVF  + +++ ++WN
Sbjct: 529 AALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWN 588

Query: 223 ALFSRFQDYESPDQGLRIFYQMLLKG-----FKPNMCTFIVILKACSSLSDVGFGKQL-- 275
            L      +   ++ L +F  M+ +       KPN  TFI +  ACS    +  G  L  
Sbjct: 589 VLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFY 648

Query: 276 ---HAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
              H H ++ + D    V    VD+  ++G LE+A
Sbjct: 649 RMKHDHGVEPTSDHYACV----VDLLGRAGQLEEA 679



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 45/153 (29%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-----KDMEKKFSKFSLS 55
           + L++RVF  MP  NV++WN L+      G G++ + LF +M     +  E K ++ +  
Sbjct: 569 LNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFI 628

Query: 56  TVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-- 113
           TV    ++SG I  G                                   L +FYR+K  
Sbjct: 629 TVFAACSHSGLISEG-----------------------------------LNLFYRMKHD 653

Query: 114 ---DPDVVAWGAIITCLDQQGCCQEAAKIFNLM 143
              +P    +  ++  L + G  +EA ++ N M
Sbjct: 654 HGVEPTSDHYACVVDLLGRAGQLEEAYELVNTM 686


>gi|224084249|ref|XP_002307242.1| predicted protein [Populus trichocarpa]
 gi|222856691|gb|EEE94238.1| predicted protein [Populus trichocarpa]
          Length = 561

 Score =  324 bits (830), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 182/531 (34%), Positives = 295/531 (55%), Gaps = 3/531 (0%)

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
           G ++H  +++ G   D F+  SL+ MYS CG  ++A KVF  +   D V W ++I    +
Sbjct: 29  GSLIHGQSVKHGFFNDVFVQTSLLGMYSNCGDLESANKVFGCVVQKDAVLWNSMIFGNLK 88

Query: 130 QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
               +E   +F  M    + P +F  + ++ A  + GD R G+ IHA +      +D  +
Sbjct: 89  NEKLEEGVLLFGKMVRHGIVPTEFTYSMILNACGKLGDCRWGQVIHAQVIVLNVLADLPL 148

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
            NAL+ MY   G    G  VF  I + D VSWN++ S + +       + +F Q++    
Sbjct: 149 QNALLDMYCSCGDTETGFNVFNKIENPDLVSWNSMISGYAENGEGADAMNLFLQLVGVFL 208

Query: 250 -KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
            KP+  TF  ++ A S+ S   +GK LHA  +K   + +  +GT+L+ MY K+G +E A 
Sbjct: 209 PKPDEYTFAAVISATSAFSATCYGKPLHAQVLKVGSERSVFIGTTLLSMYLKNGDIESAE 268

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
             F+ +  KD+  +T +I  +++ G  E A+K F  M  EG K + F L+  L+ C+ +A
Sbjct: 269 QVFNMIEGKDVVLWTEMIMGHSRLGGGESAIKLFSMMCHEGYKIDSFALSGALSACADLA 328

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
           TL  G ++H+  VK G   ++ V  +LV MYAK G +  A ++F   +  D   WN M+G
Sbjct: 329 TLNQGEMIHTQTVKRGCDAEISVCGSLVHMYAKNGDLHAARSIFSQVSNPDLKCWNSMLG 388

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGIT 488
           GY +HG+ E+A+  F  +L  G  PD++TF+ +LSACSH GL+EEGK  +S IKK   + 
Sbjct: 389 GYSQHGMAEEAMIIFAKILVNGQRPDQVTFLSLLSACSHSGLVEEGKLLWSHIKK-NDVI 447

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTPNAL-VWENLLGACSWHGNIELDEKDAE 547
           P  KH++CM+ +L RAG   E E  I ++  + + L +W  LL +C    N+++  + AE
Sbjct: 448 PGPKHYSCMVSLLSRAGLLDEAEELIIKSTYSKDHLELWRTLLSSCVNKRNLKIGVRAAE 507

Query: 548 KLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           ++L+LEP+  + ++  S++ A  GRW   + +R  +S   I+K+P  SWIE
Sbjct: 508 EILQLEPEDSATHILLSNLYAAAGRWEAVAEMRRKISGLMIEKDPGLSWIE 558



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 116/413 (28%), Positives = 208/413 (50%), Gaps = 1/413 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A +VF  + + + V WN+++ G  ++   ++ + LF  M       ++F+ S +L  
Sbjct: 61  LESANKVFGCVVQKDAVLWNSMIFGNLKNEKLEEGVLLFGKMVRHGIVPTEFTYSMILNA 120

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
               G  + GQV+HA  I L    D  L  +L+DMY  CG  +    VF +I++PD+V+W
Sbjct: 121 CGKLGDCRWGQVIHAQVIVLNVLADLPLQNALLDMYCSCGDTETGFNVFNKIENPDLVSW 180

Query: 121 GAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            ++I+   + G   +A  +F  L+     KP+++   +++ AT+       G+ +HA + 
Sbjct: 181 NSMISGYAENGEGADAMNLFLQLVGVFLPKPDEYTFAAVISATSAFSATCYGKPLHAQVL 240

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K G E    +G  L+SMY++NG +    +VF  I  +D V W  +          +  ++
Sbjct: 241 KVGSERSVFIGTTLLSMYLKNGDIESAEQVFNMIEGKDVVLWTEMIMGHSRLGGGESAIK 300

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F  M  +G+K +       L AC+ L+ +  G+ +H  T+K   D    V  SLV MY 
Sbjct: 301 LFSMMCHEGYKIDSFALSGALSACADLATLNQGEMIHTQTVKRGCDAEISVCGSLVHMYA 360

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K+G L  A   F  ++N DL  + +++  Y+Q G AE A+  F K+ + G + ++ T  S
Sbjct: 361 KNGDLHAARSIFSQVSNPDLKCWNSMLGGYSQHGMAEEAMIIFAKILVNGQRPDQVTFLS 420

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
            L+ CS    +  G+LL S   K   +      + +V++ ++ G +D+AE + 
Sbjct: 421 LLSACSHSGLVEEGKLLWSHIKKNDVIPGPKHYSCMVSLLSRAGLLDEAEELI 473



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/402 (28%), Positives = 198/402 (49%), Gaps = 9/402 (2%)

Query: 143 MRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGR 202
           M    + PN    +S ++A     D   G  IH    K+GF +D  V  +L+ MY   G 
Sbjct: 1   MGTQGLTPNGSTFSSSLQACCLLEDWFMGSLIHGQSVKHGFFNDVFVQTSLLGMYSNCGD 60

Query: 203 VSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKA 262
           +   ++VF  +  +D+V WN++       E  ++G+ +F +M+  G  P   T+ +IL A
Sbjct: 61  LESANKVFGCVVQKDAVLWNSMIFGNLKNEKLEEGVLLFGKMVRHGIVPTEFTYSMILNA 120

Query: 263 CSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAY 322
           C  L D  +G+ +HA  I  ++  +  +  +L+DMY   G  E     F+ + N DL ++
Sbjct: 121 CGKLGDCRWGQVIHAQVIVLNVLADLPLQNALLDMYCSCGDTETGFNVFNKIENPDLVSW 180

Query: 323 TAIITSYAQAGEAEMALKCFRKMRLEGI---KSNEFTLASCLNGCSPVATLANGRLLHSI 379
            ++I+ YA+ GE   A+  F  ++L G+   K +E+T A+ ++  S  +    G+ LH+ 
Sbjct: 181 NSMISGYAENGEGADAMNLF--LQLVGVFLPKPDEYTFAAVISATSAFSATCYGKPLHAQ 238

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
            +K G    +F+ T L++MY K G I+ AE VF     +D   W  MI G+ + G GE A
Sbjct: 239 VLKVGSERSVFIGTTLLSMYLKNGDIESAEQVFNMIEGKDVVLWTEMIMGHSRLGGGESA 298

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMI 498
           ++ F MM  EGY  D       LSAC+ +  + +G+  H  ++K+  G    I     ++
Sbjct: 299 IKLFSMMCHEGYKIDSFALSGALSACADLATLNQGEMIHTQTVKR--GCDAEISVCGSLV 356

Query: 499 DILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
            +  + G      +  ++    P+   W ++LG  S HG  E
Sbjct: 357 HMYAKNGDLHAARSIFSQVS-NPDLKCWNSMLGGYSQHGMAE 397


>gi|255538308|ref|XP_002510219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
 gi|223550920|gb|EEF52406.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
          Length = 1113

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 192/584 (32%), Positives = 295/584 (50%), Gaps = 6/584 (1%)

Query: 4    AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
            A   F  MP  +VVSWNAL+ GY+ +G     + LF  M  +     + +L  +L     
Sbjct: 496  AHNAFDYMPIRDVVSWNALICGYSRNGYDFSALELFVQMLKLGFCPRQTTLVGLLPSCGQ 555

Query: 64   SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
               +  G+ +H   I+ G  LD  +  +L  MY+KCG  + A  +F  + D  VV+W  +
Sbjct: 556  LELVFQGKSIHGFGIKSGLHLDPQVKNALTSMYAKCGDLEAAEYLFEEMMDKSVVSWNTM 615

Query: 124  ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
            I    Q G   EA  +F  M  + V+ +Q  + SL  A          ESIH    K G 
Sbjct: 616  IGAYGQNGFFDEAMFVFKRMIGAGVEVSQVTIMSLPSANANP------ESIHCYTIKVGL 669

Query: 184  ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
              D  V  +L+ MY   G   +   ++ ++  ++ VS  A+ + + +  +    +  F Q
Sbjct: 670  ADDASVVTSLICMYARYGSTDHAELLYWSLPQKNLVSLTAIITSYAEAGNLGLVMESFSQ 729

Query: 244  MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
            M     KP+    + IL   +    +  G   H + IK  LD  ++V   L+ MY K   
Sbjct: 730  MHQLNMKPDSVAMLSILHGIADPVHICIGHVFHGYAIKSGLDTFNLVTNGLISMYSKFNN 789

Query: 304  LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
            +E     F  +  K L ++ ++I+   QAG A  A++ F +M++ G   +  T+AS L+G
Sbjct: 790  VEALFGLFSGMHEKPLISWNSVISGCVQAGRASHAIELFCQMKMHGCNPDAITIASLLSG 849

Query: 364  CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
            CS +  L  G  LHS  ++    ++ FV TAL+ MY KCGSI  AE VFK       A+W
Sbjct: 850  CSQLGYLQFGERLHSYILRNKLEMEDFVGTALIHMYTKCGSIVHAERVFKSIGKPCLATW 909

Query: 424  NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
            N MI GY  +G   KAL  +  M ++G  PD+ITF+ VL+AC+H GLI EG+++F  + K
Sbjct: 910  NAMISGYSCYGFEHKALTCYSEMQEQGVEPDKITFLGVLAACTHGGLIHEGRRYFQIMTK 969

Query: 484  IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            +Y + PT++H ACM+ +L R G F E   FI   +  P++ VW   L AC  H  ++L E
Sbjct: 970  VYDMVPTLQHCACMVGLLARVGLFEEALLFIKNMEKEPDSAVWGAFLSACCIHQEVKLGE 1029

Query: 544  KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQG 587
              A+KL  L+ +    YV  S++ A  GRW+D + VR ++   G
Sbjct: 1030 YLAKKLYLLDCRNGGLYVLMSNLYAVTGRWDDVARVREMMKDAG 1073



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 123/408 (30%), Positives = 202/408 (49%), Gaps = 10/408 (2%)

Query: 78  IRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAA 137
           I+ G     ++S +L+D+Y K G    A   F  +   DVV+W A+I    + G    A 
Sbjct: 469 IKRGIDQFVYVSTALLDLYMKLGRVSYAHNAFDYMPIRDVVSWNALICGYSRNGYDFSAL 528

Query: 138 KIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMY 197
           ++F  M +    P Q  L  L+ +  +      G+SIH    K G   D  V NAL SMY
Sbjct: 529 ELFVQMLKLGFCPRQTTLVGLLPSCGQLELVFQGKSIHGFGIKSGLHLDPQVKNALTSMY 588

Query: 198 MENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFI 257
            + G +     +FE +  +  VSWN +   +      D+ + +F +M+  G + +  T +
Sbjct: 589 AKCGDLEAAEYLFEEMMDKSVVSWNTMIGAYGQNGFFDEAMFVFKRMIGAGVEVSQVTIM 648

Query: 258 VILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK 317
            +  A ++       + +H +TIK  L  +  V TSL+ MY + G  + A + + SL  K
Sbjct: 649 SLPSANAN------PESIHCYTIKVGLADDASVVTSLICMYARYGSTDHAELLYWSLPQK 702

Query: 318 DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLH 377
           +L + TAIITSYA+AG   + ++ F +M    +K +   + S L+G +    +  G + H
Sbjct: 703 NLVSLTAIITSYAEAGNLGLVMESFSQMHQLNMKPDSVAMLSILHGIADPVHICIGHVFH 762

Query: 378 SIAVKTGHLLDMF--VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
             A+K+G  LD F  V+  L++MY+K  +++    +F G   +   SWN +I G V+ G 
Sbjct: 763 GYAIKSG--LDTFNLVTNGLISMYSKFNNVEALFGLFSGMHEKPLISWNSVISGCVQAGR 820

Query: 436 GEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
              A+E F  M   G  PD IT   +LS CS +G ++ G++  S I +
Sbjct: 821 ASHAIELFCQMKMHGCNPDAITIASLLSGCSQLGYLQFGERLHSYILR 868



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 109/425 (25%), Positives = 204/425 (48%), Gaps = 8/425 (1%)

Query: 1    MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
            +E A+ +F+ M + +VVSWN ++  Y ++G   + M +F  M     + S+ ++ ++   
Sbjct: 594  LEAAEYLFEEMMDKSVVSWNTMIGAYGQNGFFDEAMFVFKRMIGAGVEVSQVTIMSLPSA 653

Query: 61   FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             AN       + +H   I++G A D  +  SL+ MY++ G  D+A  +++ +   ++V+ 
Sbjct: 654  NANP------ESIHCYTIKVGLADDASVVTSLICMYARYGSTDHAELLYWSLPQKNLVSL 707

Query: 121  GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             AIIT   + G      + F+ M + ++KP+   + S++    +      G   H    K
Sbjct: 708  TAIITSYAEAGNLGLVMESFSQMHQLNMKPDSVAMLSILHGIADPVHICIGHVFHGYAIK 767

Query: 181  YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             G ++  LV N L+SMY +   V     +F  +  +  +SWN++ S           + +
Sbjct: 768  SGLDTFNLVTNGLISMYSKFNNVEALFGLFSGMHEKPLISWNSVISGCVQAGRASHAIEL 827

Query: 241  FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
            F QM + G  P+  T   +L  CS L  + FG++LH++ +++ L+    VGT+L+ MY K
Sbjct: 828  FCQMKMHGCNPDAITIASLLSGCSQLGYLQFGERLHSYILRNKLEMEDFVGTALIHMYTK 887

Query: 301  SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
             G +  A   F S+    L  + A+I+ Y+  G    AL C+ +M+ +G++ ++ T    
Sbjct: 888  CGSIVHAERVFKSIGKPCLATWNAMISGYSCYGFEHKALTCYSEMQEQGVEPDKITFLGV 947

Query: 361  LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA-LVAMYAKCGSIDDAEAVFKG-SALR 418
            L  C+    +  GR    I  K   ++      A +V + A+ G  ++A    K      
Sbjct: 948  LAACTHGGLIHEGRRYFQIMTKVYDMVPTLQHCACMVGLLARVGLFEEALLFIKNMEKEP 1007

Query: 419  DTASW 423
            D+A W
Sbjct: 1008 DSAVW 1012



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 112/418 (26%), Positives = 185/418 (44%), Gaps = 41/418 (9%)

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           I   + K G +    V  AL+ +YM+ GRVSY    F+ +  +D VSWNAL   +     
Sbjct: 464 IQNHLIKRGIDQFVYVSTALLDLYMKLGRVSYAHNAFDYMPIRDVVSWNALICGYSRNGY 523

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
               L +F QML  GF P   T + +L +C  L  V  GK +H   IK  L  +  V  +
Sbjct: 524 DFSALELFVQMLKLGFCPRQTTLVGLLPSCGQLELVFQGKSIHGFGIKSGLHLDPQVKNA 583

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           L  MY K G LE A   F+ + +K + ++  +I +Y Q G  + A+  F++M   G++ +
Sbjct: 584 LTSMYAKCGDLEAAEYLFEEMMDKSVVSWNTMIGAYGQNGFFDEAMFVFKRMIGAGVEVS 643

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
           + T+ S      P A  AN   +H   +K G   D  V T+L+ MYA+ GS D AE ++ 
Sbjct: 644 QVTIMSL-----PSAN-ANPESIHCYTIKVGLADDASVVTSLICMYARYGSTDHAELLYW 697

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVL----------- 462
               ++  S   +I  Y + G     +E+F  M      PD +  + +L           
Sbjct: 698 SLPQKNLVSLTAIITSYAEAGNLGLVMESFSQMHQLNMKPDSVAMLSILHGIADPVHICI 757

Query: 463 ----------SACSHMGLIEEG----KKHFSSIKKIYGI------TPTIKHFACMIDILG 502
                     S      L+  G       F++++ ++G+       P I  +  +I    
Sbjct: 758 GHVFHGYAIKSGLDTFNLVTNGLISMYSKFNNVEALFGLFSGMHEKPLIS-WNSVISGCV 816

Query: 503 RAGKFTEIENFITETKL---TPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKME 557
           +AG+ +       + K+    P+A+   +LL  CS  G ++  E+    +L  + +ME
Sbjct: 817 QAGRASHAIELFCQMKMHGCNPDAITIASLLSGCSQLGYLQFGERLHSYILRNKLEME 874



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 113/219 (51%), Gaps = 5/219 (2%)

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
           +K  +PN+       K  +SL       Q+  H IK  +D    V T+L+D+Y K G + 
Sbjct: 440 MKSQRPNLAP-----KGSNSLDANTEAIQIQNHLIKRGIDQFVYVSTALLDLYMKLGRVS 494

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
            A  AFD +  +D+ ++ A+I  Y++ G    AL+ F +M   G    + TL   L  C 
Sbjct: 495 YAHNAFDYMPIRDVVSWNALICGYSRNGYDFSALELFVQMLKLGFCPRQTTLVGLLPSCG 554

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
            +  +  G+ +H   +K+G  LD  V  AL +MYAKCG ++ AE +F+    +   SWN 
Sbjct: 555 QLELVFQGKSIHGFGIKSGLHLDPQVKNALTSMYAKCGDLEAAEYLFEEMMDKSVVSWNT 614

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
           MIG Y ++G  ++A+  F+ M+  G    ++T + + SA
Sbjct: 615 MIGAYGQNGFFDEAMFVFKRMIGAGVEVSQVTIMSLPSA 653


>gi|357122034|ref|XP_003562721.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Brachypodium distachyon]
          Length = 689

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 188/601 (31%), Positives = 322/601 (53%), Gaps = 7/601 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+RVF  +P  +  SWN+LL  +  +G       L  +M       + F+L + L+  A 
Sbjct: 44  ARRVFDEIPRPDAASWNSLLTAHVSAGAHPAAWCLLRAMHAQGVAANTFALGSSLRSAAA 103

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +     G  + ++A + G A + F + +L+ MY+KCG   +A +VF  + + + V+W A+
Sbjct: 104 ARCPALGAQLQSLAFKSGLADNVFAASALLHMYAKCGRVRDARRVFDGMPERNTVSWNAL 163

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    + G   +A ++F  M    + P++    +L+ A  ++ +      +H  I KYG 
Sbjct: 164 IAGYVESGKVLQALELFINMETERLVPDEATFAALLTAFDDS-NYFLMHQLHGKIVKYGS 222

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALFSRFQDYESPDQGLRIFY 242
                V NA ++ Y + G ++   R+F+ I   +D +SWNA+   +  +      +  F 
Sbjct: 223 ALGLTVSNAAITAYSQCGALAESRRIFDQIGDSRDLISWNAMLGAYTYHGMDYDAMGFFV 282

Query: 243 QMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK- 300
           +M+ + G + +M +F  I+  C    D   G+ +H   IK+ L+G   V  +L+ MY + 
Sbjct: 283 RMIRESGVQLDMYSFTSIISTCPEHDDHQ-GRAIHGLVIKNGLEGATPVCNALIAMYTRI 341

Query: 301 SG--CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
           SG   +EDA   FDSL  KD  ++ +++T Y+Q   +  AL+ FR M+   I+ +E+  +
Sbjct: 342 SGNCMMEDACKCFDSLLIKDTVSWNSMLTGYSQHNLSADALRFFRCMQSANIRCDEYAFS 401

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           + L  CS +A L  GR +H   + +G   + FVS++L+ MY+K G +DDA+  F+ +   
Sbjct: 402 AALRSCSELAVLQLGRQIHGSIIHSGFASNNFVSSSLIFMYSKSGILDDAKKSFEEADKG 461

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
            +  WN MI GY +HG        F  M++     D +TFV ++++CSH GL++EG +  
Sbjct: 462 SSVPWNSMIFGYAQHGHAHIVHSLFNEMVELKVPLDHVTFVGLITSCSHAGLVDEGSEIL 521

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           ++++  YGI   ++H+AC +D+ GRAG+  + +  I      P+A+VW  LLGAC  HGN
Sbjct: 522 NAMETRYGIPLRMEHYACGVDLYGRAGQLEKAKELIDSMPFEPDAMVWMTLLGACRIHGN 581

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           +EL  + A  LL  EPK  S Y+  S + +  G W+D + V+  + ++G+ K P  SWIE
Sbjct: 582 MELASEVASHLLVSEPKQHSTYILLSSMYSGLGMWSDRAIVQREMKNRGLSKVPGWSWIE 641

Query: 599 V 599
           V
Sbjct: 642 V 642



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 127/502 (25%), Positives = 226/502 (45%), Gaps = 44/502 (8%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYA-------------------------------ESG 30
           +L    FKS    NV + +ALL+ YA                               ESG
Sbjct: 112 QLQSLAFKSGLADNVFAASALLHMYAKCGRVRDARRVFDGMPERNTVSWNALIAGYVESG 171

Query: 31  DGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSC 90
              + + LF +M+       + + + +L  F +S Y    Q +H   ++ G AL   +S 
Sbjct: 172 KVLQALELFINMETERLVPDEATFAALLTAFDDSNYFLMHQ-LHGKIVKYGSALGLTVSN 230

Query: 91  SLVDMYSKCGLADNALKVFYRIKDP-DVVAWGAIITCLDQQGCCQEAAKIF-NLMRESSV 148
           + +  YS+CG    + ++F +I D  D+++W A++      G   +A   F  ++RES V
Sbjct: 231 AAITAYSQCGALAESRRIFDQIGDSRDLISWNAMLGAYTYHGMDYDAMGFFVRMIRESGV 290

Query: 149 KPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYME---NGRVSY 205
           + + +  TS++    E  D + G +IH ++ K G E  T V NAL++MY     N  +  
Sbjct: 291 QLDMYSFTSIISTCPEHDDHQ-GRAIHGLVIKNGLEGATPVCNALIAMYTRISGNCMMED 349

Query: 206 GSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSS 265
             + F+++  +D+VSWN++ + +  +      LR F  M     + +   F   L++CS 
Sbjct: 350 ACKCFDSLLIKDTVSWNSMLTGYSQHNLSADALRFFRCMQSANIRCDEYAFSAALRSCSE 409

Query: 266 LSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
           L+ +  G+Q+H   I      N+ V +SL+ MY KSG L+DA  +F+         + ++
Sbjct: 410 LAVLQLGRQIHGSIIHSGFASNNFVSSSLIFMYSKSGILDDAKKSFEEADKGSSVPWNSM 469

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG-RLLHSIAVKTG 384
           I  YAQ G A +    F +M    +  +  T    +  CS    +  G  +L+++  + G
Sbjct: 470 IFGYAQHGHAHIVHSLFNEMVELKVPLDHVTFVGLITSCSHAGLVDEGSEILNAMETRYG 529

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DTASWNMMIGGYVKHGLGEKALE-A 442
             L M      V +Y + G ++ A+ +        D   W  ++G    HG  E A E A
Sbjct: 530 IPLRMEHYACGVDLYGRAGQLEKAKELIDSMPFEPDAMVWMTLLGACRIHGNMELASEVA 589

Query: 443 FRMMLDEGYVPDEITFVVVLSA 464
             +++ E   P + +  ++LS+
Sbjct: 590 SHLLVSE---PKQHSTYILLSS 608



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 136/297 (45%), Gaps = 11/297 (3%)

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           HA + K    S T     L +  +    ++   RVF+ I   D+ SWN+L +      + 
Sbjct: 13  HATLLKSCIISPTRWNQLLTAYSLSPLGLAAARRVFDEIPRPDAASWNSLLTAHVSAGAH 72

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
                +   M  +G   N       L++ ++      G QL +   K  L  N    ++L
Sbjct: 73  PAAWCLLRAMHAQGVAANTFALGSSLRSAAAARCPALGAQLQSLAFKSGLADNVFAASAL 132

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           + MY K G + DA   FD +  ++  ++ A+I  Y ++G+   AL+ F  M  E +  +E
Sbjct: 133 LHMYAKCGRVRDARRVFDGMPERNTVSWNALIAGYVESGKVLQALELFINMETERLVPDE 192

Query: 355 FTLASCLNGCSPVATLANGRLLHSI---AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            T A+ L         +N  L+H +    VK G  L + VS A +  Y++CG++ ++  +
Sbjct: 193 ATFAALLTAFDD----SNYFLMHQLHGKIVKYGSALGLTVSNAAITAYSQCGALAESRRI 248

Query: 412 FK--GSALRDTASWNMMIGGYVKHGLGEKALEAF-RMMLDEGYVPDEITFVVVLSAC 465
           F   G + RD  SWN M+G Y  HG+   A+  F RM+ + G   D  +F  ++S C
Sbjct: 249 FDQIGDS-RDLISWNAMLGAYTYHGMDYDAMGFFVRMIRESGVQLDMYSFTSIISTC 304



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 102/227 (44%), Gaps = 2/227 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A + F S+   + VSWN++L GY++       +  F  M+    +  +++ S  L+ 
Sbjct: 347 MEDACKCFDSLLIKDTVSWNSMLTGYSQHNLSADALRFFRCMQSANIRCDEYAFSAALRS 406

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    ++ G+ +H   I  G A + F+S SL+ MYSK G+ D+A K F        V W
Sbjct: 407 CSELAVLQLGRQIHGSIIHSGFASNNFVSSSLIFMYSKSGILDDAKKSFEEADKGSSVPW 466

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG-ESIHAVIC 179
            ++I    Q G       +FN M E  V  +      L+ + +  G    G E ++A+  
Sbjct: 467 NSMIFGYAQHGHAHIVHSLFNEMVELKVPLDHVTFVGLITSCSHAGLVDEGSEILNAMET 526

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-DSVSWNALF 225
           +YG           V +Y   G++     + +++  + D++ W  L 
Sbjct: 527 RYGIPLRMEHYACGVDLYGRAGQLEKAKELIDSMPFEPDAMVWMTLL 573


>gi|356509887|ref|XP_003523674.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Glycine max]
          Length = 750

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 186/594 (31%), Positives = 315/594 (53%), Gaps = 17/594 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQK----VMHLFCSMKDMEKKFSKFSLST 56
           MELA++VF  +P+ +VV+W AL+ G+  +G+ +K    + H+   ++D EK  +K    T
Sbjct: 154 MELARKVFDEIPKRDVVAWTALIIGHVHNGEPEKGLRCLRHVHGVVEDDEKPNAK----T 209

Query: 57  VLKGF---ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
              GF    N G +  G  +H + ++ G A   F+  S++DMYSKCG+   A + F  + 
Sbjct: 210 WEGGFLACGNLGAVSEGSCLHGVVVKNGVA--SFIQSSVLDMYSKCGVPREAYRSFCEVI 267

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES 173
             D++ W ++I    + G   E  ++F  M+E+ ++P+  V+  ++     + D   G++
Sbjct: 268 HKDLLCWTSVIGVYARIGMMGECLRLFREMQENEIRPDGVVVGCVLSGFGNSMDVFQGKA 327

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
            H VI +  +  D  V ++L+ MY + G +S   R+F  +       WN +   +     
Sbjct: 328 FHGVIIRRYYVDDEKVNDSLLFMYCKFGMLSLAERIF-PLCQGSGDGWNFMVFGYGKVGE 386

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGT 292
             + + +F +M   G           + +C+ L  V  G+ +H + IK  LDG ++ V  
Sbjct: 387 NVKCVELFREMQWLGIHSETIGIASAIASCAQLGAVNLGRSIHCNVIKGFLDGKNISVTN 446

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           SLV+MY K G +  A   F++ +  D+ ++  +I+S+    + E A+  F KM  E  K 
Sbjct: 447 SLVEMYGKCGKMTFAWRIFNT-SETDVVSWNTLISSHVHIKQHEEAVNLFSKMVREDQKP 505

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
           N  TL   L+ CS +A+L  G  +H    ++G  L++ + TAL+ MYAKCG +  +  VF
Sbjct: 506 NTATLVVVLSACSHLASLEKGERVHCYINESGFTLNLPLGTALIDMYAKCGQLQKSRMVF 565

Query: 413 KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE 472
                +D   WN MI GY  +G  E ALE F+ M +   +P+ ITF+ +LSAC+H GL+E
Sbjct: 566 DSMMEKDVICWNAMISGYGMNGYAESALEIFQHMEESNVMPNGITFLSLLSACAHAGLVE 625

Query: 473 EGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
           EGK  F+ +K  Y + P +KH+ CM+D+LGR G   E E  +    ++P+  VW  LLG 
Sbjct: 626 EGKYMFARMKS-YSVNPNLKHYTCMVDLLGRYGNVQEAEAMVLSMPISPDGGVWGALLGH 684

Query: 533 CSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQ 586
           C  H  IE+  + A+  ++LEP+ +  Y+  +++ +  GRW +   VR  +  +
Sbjct: 685 CKTHNQIEMGIRIAKYAIDLEPENDGYYIIMANMYSFIGRWEEAENVRRTMKER 738



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 154/570 (27%), Positives = 250/570 (43%), Gaps = 30/570 (5%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           +F S+P  +   +N+ L          +V+ LF  M+      + F+L  V+   A+   
Sbjct: 62  LFHSLPSKDTFLYNSFLKSLFSRSLFPRVLSLFSHMRASNLSPNHFTLPIVVSAAAHLTL 121

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +  G  +HA+A + G       S S V +YS+CG  + A KVF  I   DVVAW A+I  
Sbjct: 122 LPHGASLHALASKTGLFHS---SASFVSLYSRCGRMELARKVFDEIPKRDVVAWTALIIG 178

Query: 127 LDQQGCCQEAAKIFNLMR------ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
               G   E  K    +R      E   KPN         A    G    G  +H V+ K
Sbjct: 179 HVHNG---EPEKGLRCLRHVHGVVEDDEKPNAKTWEGGFLACGNLGAVSEGSCLHGVVVK 235

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G  S   + ++++ MY + G      R F  + H+D + W ++   +       + LR+
Sbjct: 236 NGVAS--FIQSSVLDMYSKCGVPREAYRSFCEVIHKDLLCWTSVIGVYARIGMMGECLRL 293

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M     +P+      +L    +  DV  GK  H   I+     +  V  SL+ MY K
Sbjct: 294 FREMQENEIRPDGVVVGCVLSGFGNSMDVFQGKAFHGVIIRRYYVDDEKVNDSLLFMYCK 353

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L  A   F  L       +  ++  Y + GE    ++ FR+M+  GI S    +AS 
Sbjct: 354 FGMLSLAERIF-PLCQGSGDGWNFMVFGYGKVGENVKCVELFREMQWLGIHSETIGIASA 412

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLD---MFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           +  C+ +  +  GR +H   +K    LD   + V+ +LV MY KCG +  A  +F  S  
Sbjct: 413 IASCAQLGAVNLGRSIHCNVIKG--FLDGKNISVTNSLVEMYGKCGKMTFAWRIFNTSE- 469

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
            D  SWN +I  +V     E+A+  F  M+ E   P+  T VVVLSACSH+  +E+G++ 
Sbjct: 470 TDVVSWNTLISSHVHIKQHEEAVNLFSKMVREDQKPNTATLVVVLSACSHLASLEKGERV 529

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
              I +  G T  +     +ID+  + G+  +    + ++ +  + + W  ++     +G
Sbjct: 530 HCYINE-SGFTLNLPLGTALIDMYAKCGQLQK-SRMVFDSMMEKDVICWNAMISGYGMNG 587

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDIS 567
                   AE  LE+   ME + V P+ I+
Sbjct: 588 Y-------AESALEIFQHMEESNVMPNGIT 610



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 143/318 (44%), Gaps = 14/318 (4%)

Query: 175 HAVICKYGFESDTLVGNALVSMYME-NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           HA+    G  ++  + + L+S+Y   N   S  S +F ++  +D+  +N+          
Sbjct: 27  HALTVTSGHSTNLFMASKLISLYDSLNNDPSSCSTLFHSLPSKDTFLYNSFLKSLFSRSL 86

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
             + L +F  M      PN  T  +++ A + L+ +  G  LHA   K  L  +     S
Sbjct: 87  FPRVLSLFSHMRASNLSPNHFTLPIVVSAAAHLTLLPHGASLHALASKTGLFHS---SAS 143

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI--- 350
            V +Y + G +E A   FD +  +D+ A+TA+I  +   GE E  L+C R   + G+   
Sbjct: 144 FVSLYSRCGRMELARKVFDEIPKRDVVAWTALIIGHVHNGEPEKGLRCLR--HVHGVVED 201

Query: 351 --KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
             K N  T       C  +  ++ G  LH + VK G  +  F+ ++++ MY+KCG   +A
Sbjct: 202 DEKPNAKTWEGGFLACGNLGAVSEGSCLHGVVVKNG--VASFIQSSVLDMYSKCGVPREA 259

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
              F     +D   W  +IG Y + G+  + L  FR M +    PD +    VLS   + 
Sbjct: 260 YRSFCEVIHKDLLCWTSVIGVYARIGMMGECLRLFREMQENEIRPDGVVVGCVLSGFGNS 319

Query: 469 GLIEEGKK-HFSSIKKIY 485
             + +GK  H   I++ Y
Sbjct: 320 MDVFQGKAFHGVIIRRYY 337



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 135/302 (44%), Gaps = 28/302 (9%)

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYD-----KSGCLEDAGVAFDSLANKDLFAYTAIITS 328
           + HA T+      N  + + L+ +YD      S C       F SL +KD F Y + + S
Sbjct: 25  RFHALTVTSGHSTNLFMASKLISLYDSLNNDPSSC----STLFHSLPSKDTFLYNSFLKS 80

Query: 329 YAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLD 388
                     L  F  MR   +  N FTL   ++  + +  L +G  LH++A KTG    
Sbjct: 81  LFSRSLFPRVLSLFSHMRASNLSPNHFTLPIVVSAAAHLTLLPHGASLHALASKTG---- 136

Query: 389 MFVSTA-LVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRM-- 445
           +F S+A  V++Y++CG ++ A  VF     RD  +W  +I G+V +G  EK L   R   
Sbjct: 137 LFHSSASFVSLYSRCGRMELARKVFDEIPKRDVVAWTALIIGHVHNGEPEKGLRCLRHVH 196

Query: 446 -MLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA 504
            ++++   P+  T+     AC ++G + EG      + K  G+   I+  + ++D+  + 
Sbjct: 197 GVVEDDEKPNAKTWEGGFLACGNLGAVSEGSCLHGVVVK-NGVASFIQ--SSVLDMYSKC 253

Query: 505 GKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564
           G   E      E  +  + L W +++G  +  G +        + L L  +M+ N + P 
Sbjct: 254 GVPREAYRSFCEV-IHKDLLCWTSVIGVYARIGMM-------GECLRLFREMQENEIRPD 305

Query: 565 DI 566
            +
Sbjct: 306 GV 307



 Score = 46.2 bits (108), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 81/200 (40%), Gaps = 20/200 (10%)

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA-EAVFKGSALRDTASWNM 425
           + TL +    H++ V +GH  ++F+++ L+++Y    +   +   +F     +DT  +N 
Sbjct: 17  IRTLDSLLRFHALTVTSGHSTNLFMASKLISLYDSLNNDPSSCSTLFHSLPSKDTFLYNS 76

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIY 485
            +       L  + L  F  M      P+  T  +V+SA +H+ L+  G    +S+  + 
Sbjct: 77  FLKSLFSRSLFPRVLSLFSHMRASNLSPNHFTLPIVVSAAAHLTLLPHG----ASLHALA 132

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA------------C 533
             T      A  + +  R G+  E+   + +     + + W  L+              C
Sbjct: 133 SKTGLFHSSASFVSLYSRCGRM-ELARKVFDEIPKRDVVAWTALIIGHVHNGEPEKGLRC 191

Query: 534 --SWHGNIELDEKDAEKLLE 551
               HG +E DEK   K  E
Sbjct: 192 LRHVHGVVEDDEKPNAKTWE 211


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 173/547 (31%), Positives = 296/547 (54%), Gaps = 3/547 (0%)

Query: 55  STVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
           + +++GF+   ++K    +HA  +RLG   D +L   ++      G  + + ++  + K+
Sbjct: 14  NRLIQGFSCLKHLKH---IHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKE 70

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
           P++  +  +I  L    C QE+ +I++ MR+  + P+ F    +++A     D   G  +
Sbjct: 71  PNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKM 130

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H+++ K G E+D  V  +L+++Y + G +    +VF+ I  ++  SW A  S +      
Sbjct: 131 HSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKC 190

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
            + + +F ++L  G +P+  + + +L AC    D+  G+ +  +  ++ +  N  V T+L
Sbjct: 191 REAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATAL 250

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           VD Y K G +E A   FD +  K++ +++++I  YA  G  + AL  F KM  EG+K + 
Sbjct: 251 VDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDC 310

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
           + +   L  C+ +  L  G    ++      L +  + TAL+ MYAKCG +D A  VF+G
Sbjct: 311 YAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRG 370

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
              +D   WN  I G    G  + AL  F  M   G  PD  TFV +L AC+H GL+EEG
Sbjct: 371 MRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEG 430

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
           +++F+S++ ++ +TP I+H+ CM+D+LGRAG   E    I    +  NA+VW  LLG C 
Sbjct: 431 RRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCR 490

Query: 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSC 594
            H + +L E   +KL+ LEP    NYV  S+I A   +W + + +R+++S +G+KK P  
Sbjct: 491 LHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGY 550

Query: 595 SWIEVDG 601
           SWIEVDG
Sbjct: 551 SWIEVDG 557



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/430 (27%), Positives = 204/430 (47%), Gaps = 2/430 (0%)

Query: 6   RVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSG 65
           R+     E N+  +N ++ G   +   Q+ + ++ SM+        F+   VLK  A   
Sbjct: 63  RILDQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVL 122

Query: 66  YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT 125
             + G  +H++ ++ GC  D F+  SL+++Y+KCG  DNA KVF  I D +  +W A I+
Sbjct: 123 DSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATIS 182

Query: 126 CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
                G C+EA  +F  + E  ++P+ F L  ++ A   TGD R GE I   I + G   
Sbjct: 183 GYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVR 242

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           +  V  ALV  Y + G +     VF+ +  ++ VSW+++   +     P + L +F++ML
Sbjct: 243 NVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKML 302

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
            +G KP+    + +L +C+ L  +  G         +    N V+GT+L+DMY K G ++
Sbjct: 303 NEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMD 362

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
            A   F  +  KD   + A I+  A +G  + AL  F +M   GIK +  T    L  C+
Sbjct: 363 RAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACT 422

Query: 366 PVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA-SW 423
               +  G R  +S+        ++     +V +  + G +D+A  + K   +   A  W
Sbjct: 423 HAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVW 482

Query: 424 NMMIGGYVKH 433
             ++GG   H
Sbjct: 483 GALLGGCRLH 492



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 148/305 (48%), Gaps = 1/305 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A +VF  +P+ N  SW A ++GY   G  ++ + +F  + +M  +   FSL  VL     
Sbjct: 162 AFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKR 221

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +G +++G+ +       G   + F++ +LVD Y KCG  + A  VF  + + ++V+W ++
Sbjct: 222 TGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSM 281

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I      G  +EA  +F  M    +KP+ + +  ++ +    G    G+    +I    F
Sbjct: 282 IQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEF 341

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             ++++G AL+ MY + GR+     VF  +  +D V WNA  S           L +F Q
Sbjct: 342 LDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQ 401

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQ-LHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           M   G KP+  TF+ +L AC+    V  G++  ++     +L         +VD+  ++G
Sbjct: 402 MEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAG 461

Query: 303 CLEDA 307
           CL++A
Sbjct: 462 CLDEA 466



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 111/237 (46%), Gaps = 20/237 (8%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A+ VF  M E N+VSW++++ GYA +G  ++ + LF  M +   K   +++  VL  
Sbjct: 260 MERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCS 319

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A  G ++ G     +        +  L  +L+DMY+KCG  D A +VF  ++  D V W
Sbjct: 320 CARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVW 379

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG----------DQRC 170
            A I+ L   G  ++A  +F  M +S +KP++     L+ A T  G             C
Sbjct: 380 NAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMEC 439

Query: 171 GESIHAVICKYGFESDTLVGNA---------LVSMYMENGRVSYGSRVFEAIAHQDS 218
             ++   I  YG   D L+G A         + SM ME   + +G+ +     H+D+
Sbjct: 440 VFTLTPEIEHYGCMVD-LLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDT 495


>gi|413933941|gb|AFW68492.1| hypothetical protein ZEAMMB73_143921 [Zea mays]
          Length = 564

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 188/536 (35%), Positives = 289/536 (53%), Gaps = 5/536 (0%)

Query: 64  SGYIKAGQVVHAMAIRLGCAL-DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           +G I+ G+ +HA  +  G A    FL+  L+ MYS C  A +A++VF  +  P++V+W  
Sbjct: 30  TGDIRRGRALHARLLLTGAAAASTFLANHLITMYSHCADAVSAVRVFGVVPRPNLVSWTT 89

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +++ L Q     +A   F  MR + + P QF L+S  RA       R G  +H +  + G
Sbjct: 90  LVSGLVQNSMHHDALAAFAAMRRAHIAPTQFALSSAARAAAALSAPRPGTQLHCIGIRLG 149

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F+++  V + L  MY + G +    RVF+ +  +D+V+W  +   +    S +  + IF 
Sbjct: 150 FDNELFVASNLADMYSKCGLLHEACRVFDQMPQKDAVTWTTMIDGYAKNGSLEAAILIFR 209

Query: 243 QMLLKGF-KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            M  +G    +   F   L A   L D  FG+ LH   IK   +   VV  +L+DMY KS
Sbjct: 210 DMKCEGLVGADQHVFCSALSASGGLKDGWFGRSLHCCIIKAGFELETVVRNALLDMYAKS 269

Query: 302 GCLEDAG--VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           G LE+A   V+ D     ++ + T++I  Y +AG  E AL+ + ++  +G++ NEFT AS
Sbjct: 270 GDLENASRVVSIDP-GGWNVVSATSLIDGYVEAGRIEEALETYTELGRQGVEPNEFTFAS 328

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            + GC+    L  G  LH+  +KT  + D FV + LV MY  CG I  +  +F     R 
Sbjct: 329 MIKGCAMHDLLEQGAQLHAQVLKTNLISDSFVGSTLVYMYGNCGLISLSLQLFNEIGYRT 388

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             +WN +I  Y +HG G  A++AF  M   G  P+ ITFV +L+ACSH GL++EG  +F 
Sbjct: 389 EIAWNAVINVYAQHGHGWGAIQAFDRMTSSGIRPNHITFVCLLTACSHAGLVDEGLGYFH 448

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           S+K  +GI P  +H++C+ID+ GRAG+  E E FI+E  + P+A  W +LLGAC   GN 
Sbjct: 449 SMKDAHGIEPKAEHYSCIIDMYGRAGRLDEAEKFISEMPVKPSAYAWCSLLGACRMQGNK 508

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCS 595
           EL E  A+ L++L+P     ++  S I  + G+W D   V+  +    IKK P  S
Sbjct: 509 ELGEVAAQNLMKLDPNNTGIHISLSGIYTSLGQWEDVKAVKKSMKDISIKKLPGFS 564



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 145/504 (28%), Positives = 236/504 (46%), Gaps = 30/504 (5%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A RVF  +P  N+VSW  L++G  ++      +  F +M+      ++F+LS+  +  A 
Sbjct: 72  AVRVFGVVPRPNLVSWTTLVSGLVQNSMHHDALAAFAAMRRAHIAPTQFALSSAARAAAA 131

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
               + G  +H + IRLG   + F++ +L DMYSKCGL   A +VF ++   D V W  +
Sbjct: 132 LSAPRPGTQLHCIGIRLGFDNELFVASNLADMYSKCGLLHEACRVFDQMPQKDAVTWTTM 191

Query: 124 ITCLDQQGCCQEAAKIFNLMR-ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I    + G  + A  IF  M+ E  V  +Q V  S + A+    D   G S+H  I K G
Sbjct: 192 IDGYAKNGSLEAAILIFRDMKCEGLVGADQHVFCSALSASGGLKDGWFGRSLHCCIIKAG 251

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWN-----ALFSRFQDYESPDQG 237
           FE +T+V NAL+ MY ++G +   SRV       D   WN     +L   + +    ++ 
Sbjct: 252 FELETVVRNALLDMYAKSGDLENASRVVSI----DPGGWNVVSATSLIDGYVEAGRIEEA 307

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           L  + ++  +G +PN  TF  ++K C+    +  G QLHA  +K +L  +  VG++LV M
Sbjct: 308 LETYTELGRQGVEPNEFTFASMIKGCAMHDLLEQGAQLHAQVLKTNLISDSFVGSTLVYM 367

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y   G +  +   F+ +  +   A+ A+I  YAQ G    A++ F +M   GI+ N  T 
Sbjct: 368 YGNCGLISLSLQLFNEIGYRTEIAWNAVINVYAQHGHGWGAIQAFDRMTSSGIRPNHITF 427

Query: 358 ASCLNGCSPVATLANG-------RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
              L  CS    +  G       +  H I  K  H       + ++ MY + G +D+AE 
Sbjct: 428 VCLLTACSHAGLVDEGLGYFHSMKDAHGIEPKAEHY------SCIIDMYGRAGRLDEAEK 481

Query: 411 VFKGSALRDTA-SWNMMIGGYVKHG---LGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
                 ++ +A +W  ++G     G   LGE A +   M LD       I+   + ++  
Sbjct: 482 FISEMPVKPSAYAWCSLLGACRMQGNKELGEVAAQNL-MKLDPNNTGIHISLSGIYTSLG 540

Query: 467 HMGLIEEGKKHFS--SIKKIYGIT 488
               ++  KK     SIKK+ G +
Sbjct: 541 QWEDVKAVKKSMKDISIKKLPGFS 564



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 109/229 (47%), Gaps = 5/229 (2%)

Query: 1   MELAKRVFKSMPE-LNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           +E A RV    P   NVVS  +L++GY E+G  ++ +  +  +     + ++F+ ++++K
Sbjct: 272 LENASRVVSIDPGGWNVVSATSLIDGYVEAGRIEEALETYTELGRQGVEPNEFTFASMIK 331

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           G A    ++ G  +HA  ++     D F+  +LV MY  CGL   +L++F  I     +A
Sbjct: 332 GCAMHDLLEQGAQLHAQVLKTNLISDSFVGSTLVYMYGNCGLISLSLQLFNEIGYRTEIA 391

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG--DQRCGESIHAV 177
           W A+I    Q G    A + F+ M  S ++PN      L+ A +  G  D+  G   H++
Sbjct: 392 WNAVINVYAQHGHGWGAIQAFDRMTSSGIRPNHITFVCLLTACSHAGLVDEGLG-YFHSM 450

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSR-VFEAIAHQDSVSWNALF 225
              +G E      + ++ MY   GR+    + + E      + +W +L 
Sbjct: 451 KDAHGIEPKAEHYSCIIDMYGRAGRLDEAEKFISEMPVKPSAYAWCSLL 499



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 2/206 (0%)

Query: 261 KACSSLSDVGFGKQLHAH-TIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL 319
           ++C    D+  G+ LHA   +  +   +  +   L+ MY        A   F  +   +L
Sbjct: 25  QSCGRTGDIRRGRALHARLLLTGAAAASTFLANHLITMYSHCADAVSAVRVFGVVPRPNL 84

Query: 320 FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSI 379
            ++T +++   Q      AL  F  MR   I   +F L+S     + ++    G  LH I
Sbjct: 85  VSWTTLVSGLVQNSMHHDALAAFAAMRRAHIAPTQFALSSAARAAAALSAPRPGTQLHCI 144

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
            ++ G   ++FV++ L  MY+KCG + +A  VF     +D  +W  MI GY K+G  E A
Sbjct: 145 GIRLGFDNELFVASNLADMYSKCGLLHEACRVFDQMPQKDAVTWTTMIDGYAKNGSLEAA 204

Query: 440 LEAFRMMLDEGYV-PDEITFVVVLSA 464
           +  FR M  EG V  D+  F   LSA
Sbjct: 205 ILIFRDMKCEGLVGADQHVFCSALSA 230


>gi|217426788|gb|ACK44496.1| AT5G09950-like protein [Arabidopsis arenosa]
          Length = 772

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 206/579 (35%), Positives = 302/579 (52%), Gaps = 16/579 (2%)

Query: 32  GQKVMHLFCSMKDMEKKFSKFSLSTVLKGF-----ANSGYIKAGQVVHAMAIRLGCALDK 86
           G++   LF  M  M    S  S   +L  F     A    +K G+ VH   I  G  L  
Sbjct: 10  GEEATKLFMDMNSM-IDVSPESYVILLSSFPEYSLAEQVGLKKGREVHGHVITTG--LVD 66

Query: 87  FL---SCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLM 143
           F+      LV+MY+KCG   +A +VF  + + D V+W ++IT LDQ GC  EA + +  M
Sbjct: 67  FMVGIGNGLVNMYAKCGSIADARRVFCFMMEKDSVSWNSMITGLDQNGCFIEAVERYQSM 126

Query: 144 RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRV 203
           R   + P  F L S + +       + G+ IH    K G + +  V NAL+++Y E G +
Sbjct: 127 RRHEILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYL 186

Query: 204 SYGSRVFEAIAHQDSVSWNALFSRFQDYE-SPDQGLRIFYQMLLKGFKPNMCTFIVILKA 262
           +   ++F ++   D VSWN++       E S  + +  F   L  G K N  TF  +L A
Sbjct: 187 NECRKIFSSMPEHDQVSWNSIIGALASSERSLPEAVACFLNALRAGQKLNRITFSSVLSA 246

Query: 263 CSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA-NKDLFA 321
            SSLS    GKQ+H   +K+++        +L+  Y K G ++     F  ++  +D   
Sbjct: 247 VSSLSFGELGKQIHGLALKYNIADEATTENALIACYGKCGEMDGCEKIFSRMSERRDDVT 306

Query: 322 YTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAV 381
           + ++I+ Y        AL     M   G + + F  A+ L+  + VATL  G  +H+ +V
Sbjct: 307 WNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSV 366

Query: 382 KTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALE 441
           +     D+ V +ALV MY+KCG +D A   F    +R++ SWN MI GY +HG GE+AL+
Sbjct: 367 RACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALK 426

Query: 442 AF-RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDI 500
            F  M LD    PD +TFV VLSACSH GL+EEG KHF S+   YG+ P I+HF+CM D+
Sbjct: 427 LFANMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADL 486

Query: 501 LGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG--NIELDEKDAEKLLELEPKMES 558
           LGRAG+  ++E+FI +  + PN L+W  +LGAC        EL +K AE L +LEP+   
Sbjct: 487 LGRAGELDKLEDFIDKMPVKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAV 546

Query: 559 NYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           NYV   ++ A  GRW D    R  +    +KKE   SW+
Sbjct: 547 NYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWV 585



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 119/460 (25%), Positives = 231/460 (50%), Gaps = 12/460 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+RVF  M E + VSWN+++ G  ++G   + +  + SM+  E     F+L + L   A+
Sbjct: 88  ARRVFCFMMEKDSVSWNSMITGLDQNGCFIEAVERYQSMRRHEILPGSFTLISSLSSCAS 147

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
             + K GQ +H  +++LG  L+  +S +L+ +Y++ G  +   K+F  + + D V+W +I
Sbjct: 148 LKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSI 207

Query: 124 ITCL--DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           I  L   ++   +  A   N +R +  K N+   +S++ A +       G+ IH +  KY
Sbjct: 208 IGALASSERSLPEAVACFLNALR-AGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKY 266

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALFSRFQDYESPDQGLRI 240
               +    NAL++ Y + G +    ++F  ++  +D V+WN++ S +   E   + L +
Sbjct: 267 NIADEATTENALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMISGYIHNELLAKALDL 326

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
            + ML  G + +   +  +L A +S++ +  G ++HA +++  L+ + VVG++LVDMY K
Sbjct: 327 VWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSK 386

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG-IKSNEFTLAS 359
            G L+ A   F+++  ++ +++ ++I+ YA+ G+ E ALK F  M+L+G    +  T   
Sbjct: 387 CGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFANMKLDGQTPPDHVTFVG 446

Query: 360 CLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
            L+ CS    L  G +   S++   G    +   + +  +  + G +D  E       ++
Sbjct: 447 VLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADLLGRAGELDKLEDFIDKMPVK 506

Query: 419 -DTASWNMMIGGYV-----KHGLGEKALEAFRMMLDEGYV 452
            +   W  ++G        K  LG+KA E    +  E  V
Sbjct: 507 PNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAV 546



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 86/168 (51%), Gaps = 2/168 (1%)

Query: 1   MELAKRVFKSMPEL-NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           M+  +++F  M E  + V+WN++++GY  +    K + L   M    ++   F  +TVL 
Sbjct: 288 MDGCEKIFSRMSERRDDVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLS 347

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
            FA+   ++ G  VHA ++R     D  +  +LVDMYSKCG  D AL+ F  +   +  +
Sbjct: 348 AFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYS 407

Query: 120 WGAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETG 166
           W ++I+   + G  +EA K+F N+  +    P+      ++ A +  G
Sbjct: 408 WNSMISGYARHGQGEEALKLFANMKLDGQTPPDHVTFVGVLSACSHAG 455


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 180/575 (31%), Positives = 299/575 (52%), Gaps = 54/575 (9%)

Query: 71  QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADN------ALKVFYRIKDPDVVAWGAII 124
           +++HA  I+ G     +    L++    C L+ +      A+ VF  I++P+++ W  + 
Sbjct: 4   RMIHAQMIKTGLHNTNYALSKLIEF---CVLSPHFDGLPYAISVFETIQEPNLLIWNTMF 60

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
                      A  ++  M    + PN +    L+++  ++   R G+ IH  + K G++
Sbjct: 61  RGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYD 120

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS------------------------ 220
            D  V  +L+SMY++NGR+    +VF+  +H+D VS                        
Sbjct: 121 LDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEI 180

Query: 221 -------WNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGK 273
                  WNA+ S + +  +  + L +F +M+    +P+  T + ++ AC+  + +  G+
Sbjct: 181 PIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGR 240

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
           Q+H+    H    N  +  +L+D+Y K G +E A   F+ L+ KD+ ++  +I  Y    
Sbjct: 241 QVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMN 300

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLH--------SIAVKTGH 385
             + AL  F++M   G   N+ T+ S L  C+ +  +  GR +H         +A  + H
Sbjct: 301 LYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSH 360

Query: 386 LLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRM 445
                  T+L+ MYAKCG I+ A+ VF     R  +SWN MI G+  HG    A + F  
Sbjct: 361 ------RTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSR 414

Query: 446 MLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAG 505
           M      PD+ITFV +LSACSH G+++ G+  F S+K+ Y ITP ++H+ CMID+LG +G
Sbjct: 415 MRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSG 474

Query: 506 KFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSD 565
            F E E  I   ++ P+ ++W +LL AC  HGN+EL E  A+ L+++EPK   +YV  S+
Sbjct: 475 LFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSN 534

Query: 566 ISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           I AT GRWN+ + +RALL+ +G+KK P CS IE+D
Sbjct: 535 IYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEID 569



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 147/546 (26%), Positives = 250/546 (45%), Gaps = 74/546 (13%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A  VF+++ E N++ WN +  G+A S D    ++L+  M  +    + ++   +LK 
Sbjct: 38  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKS 97

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYR--------- 111
            A S   + GQ +H   ++LG  LD ++  SL+ MY + G  ++A KVF +         
Sbjct: 98  CAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSY 157

Query: 112 ----------------------IKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK 149
                                 I   DVV+W A+I+   + G  +EA ++F  M +++V+
Sbjct: 158 TALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVR 217

Query: 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRV 209
           P++  + S+V A  ++     G  +H+ I  +GF S+  + NAL+ +Y++ G V     +
Sbjct: 218 PDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGL 277

Query: 210 FEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDV 269
           FE ++++D +SWN L   +       + L +F +ML  G  PN  T + IL AC+ L  +
Sbjct: 278 FEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAI 337

Query: 270 GFGKQLHAHTIKHSLDG-----NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA 324
             G+ +H + I   L G     +H   TSL+DMY K G +E A   FDS+ N+ L ++ A
Sbjct: 338 EIGRWIHVY-INKRLKGVANASSH--RTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNA 394

Query: 325 IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           +I  +A  G A  A   F +MR   I+ ++ T    L+ CS    L  GR          
Sbjct: 395 MIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGR---------- 444

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
               +F S             +D +   K         +  MI      GL ++A E   
Sbjct: 445 ---HIFRSMK-----------EDYKITPK------LEHYGCMIDLLGHSGLFKEAEEMIN 484

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA 504
            M  E   PD + +  +L AC   G +E G+ +  ++ KI    P    +  + +I   A
Sbjct: 485 TMEME---PDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPG--SYVLLSNIYATA 539

Query: 505 GKFTEI 510
           G++ E+
Sbjct: 540 GRWNEV 545


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 185/573 (32%), Positives = 299/573 (52%), Gaps = 42/573 (7%)

Query: 67  IKAGQVVHAMAIRLGC-----ALDKFLS-CSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           +++ +++HA  I+ G      AL K L  C L   +   GL   A+ VF  I++P ++ W
Sbjct: 15  LQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFD--GLP-YAISVFDTIQEPXLLIW 71

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +            A K++  M    + PN +    L+++  ++   + G+ +H  + K
Sbjct: 72  NTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLK 131

Query: 181 YGFESDTLVGNALVSMYMENGRVS-----------------------YGSR--------V 209
           +GF+ D  +  +L+SMY++NGR+                        Y SR        +
Sbjct: 132 FGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKM 191

Query: 210 FEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDV 269
           F+ I  +D VSWNA  S + +  +  + L +F +M+    +P+  T + +L AC+    +
Sbjct: 192 FDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSI 251

Query: 270 GFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSY 329
             G+Q+H+    H    N  +  +L+D+Y K G LE A   F  L+NKD+ ++  +I  Y
Sbjct: 252 ELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGY 311

Query: 330 AQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVK--TGHLL 387
                 + AL  F+ M   G K N+ T+ S L+ C+ +  +  GR +H    K   G   
Sbjct: 312 THMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTN 371

Query: 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML 447
              + T+L+ MYAKCG I+ A+ VF     R  +SWN MI G+  HG    A + F  M 
Sbjct: 372 ASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMR 431

Query: 448 DEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKF 507
             G  PD+ITFV +LSACSH G+++ G+  F S+ + Y + P ++H+ CMID+ G +G F
Sbjct: 432 KNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLF 491

Query: 508 TEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            E E  I   ++ P+ ++W +LL AC  HGN+EL E  A+ L+++EP+   +YV  S+I 
Sbjct: 492 KEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPENPGSYVLLSNIY 551

Query: 568 ATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           AT  RWN+ +  RALL+ +G+KK P CS IE+D
Sbjct: 552 ATAERWNEVAKTRALLNDKGMKKVPGCSSIEID 584



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 114/407 (28%), Positives = 195/407 (47%), Gaps = 33/407 (8%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A  VF ++ E  ++ WN +  G+A S D    + L+  M  +    + ++   +LK 
Sbjct: 53  LPYAISVFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKS 112

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKV------------ 108
            A S   K GQ +H   ++ G  LD ++  SL+ MY + G  ++A KV            
Sbjct: 113 CAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSY 172

Query: 109 -------------------FYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK 149
                              F  I   DVV+W A I+   + G  +EA ++F  M +++V+
Sbjct: 173 TALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVR 232

Query: 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRV 209
           P++  + +++ A  ++G    G  +H+ I  +GF  +  + NAL+ +Y + G +     +
Sbjct: 233 PDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGL 292

Query: 210 FEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDV 269
           F+ ++++D +SWN L   +       + L +F  ML  G KPN  T + IL AC+ L  +
Sbjct: 293 FQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAI 352

Query: 270 GFGKQLHAHTIKH--SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIIT 327
             G+ +H +  K    +     + TSL+DMY K G +E A   FDS+ N+ L ++ A+I 
Sbjct: 353 DIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIF 412

Query: 328 SYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
            +A  G A  A   F +MR  GI+ ++ T    L+ CS    L  GR
Sbjct: 413 GFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGR 459



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 142/277 (51%), Gaps = 2/277 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A ++F  +P  +VVSWNA ++GYAE+G+ ++ + LF  M     +  + ++ TVL  
Sbjct: 185 IESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSA 244

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A SG I+ G+ VH+     G   +  +  +L+D+YSKCG  + A  +F  + + DV++W
Sbjct: 245 CAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISW 304

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I         +EA  +F  M  S  KPN   + S++ A    G    G  IH  I K
Sbjct: 305 NTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDK 364

Query: 181 Y--GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
              G  + + +  +L+ MY + G +    +VF+++ ++   SWNA+   F  +   +   
Sbjct: 365 RLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAF 424

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL 275
            IF +M   G +P+  TF+ +L ACS    +  G+ +
Sbjct: 425 DIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHI 461


>gi|225450928|ref|XP_002280725.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340
           [Vitis vinifera]
          Length = 656

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 183/567 (32%), Positives = 307/567 (54%), Gaps = 16/567 (2%)

Query: 50  SKFSLSTVLKGF-----ANSGYIKAGQVVHAMAIRLGCALDK----------FLSCSLVD 94
           SKF+++ V   F        GY+  G  +HA  I+    LD            +  SL+ 
Sbjct: 38  SKFAINQVDISFLLSLCGREGYLHLGSSLHASIIKNFGFLDGNNRDNLRNVIVVWNSLLS 97

Query: 95  MYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSV-KPNQF 153
           MYS+CG   +A KVF  +   D ++W + I+ L   G  +   ++F  + ES + + +Q 
Sbjct: 98  MYSRCGELRDATKVFDHMPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQA 157

Query: 154 VLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAI 213
            LT+++ A  +       + IH+++  YG+E +  VGNAL++ Y   G  S G RVF+ +
Sbjct: 158 TLTTVLTACDKPEFCYVSKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEM 217

Query: 214 AHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGK 273
           + ++ V+W A+ S     +  ++ L++F +M      PN  T++  L ACS L  +  G+
Sbjct: 218 SEKNVVTWTAVISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGR 277

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
           Q+H    K  +  +  + ++L+DMY K G LEDA   F+S    D  + T I+   AQ G
Sbjct: 278 QIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQNG 337

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST 393
             E +++ F KM   G+  +   +++ L       +LA G+ +HS+ +K     + FV+ 
Sbjct: 338 FEEESIQVFVKMVKNGVVIDPNMISAILGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNN 397

Query: 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP 453
            L+ MY+KCG +DD+  +F     R++ SWN MI  + +HG G +AL+ +  M  EG  P
Sbjct: 398 GLINMYSKCGDLDDSIKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGVWP 457

Query: 454 DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENF 513
            ++TF+ +L AC+H+GL+E+G     S+ K YGI P ++H+AC++D++GRAG   E + F
Sbjct: 458 TDVTFLSLLHACAHVGLVEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRAGLLNEAKKF 517

Query: 514 ITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRW 573
           I      P  LVW+ LLGACS HGN E+ +  A +L    P+  + Y+  ++I +++G+W
Sbjct: 518 IERLPEKPGILVWQALLGACSIHGNSEMGKYAANQLFLQAPESPAPYILLANIYSSEGKW 577

Query: 574 NDFSGVRALLSSQGIKKEPSCSWIEVD 600
            + +     +   G+ KE   SWIE++
Sbjct: 578 KERARTIKKMKDMGVTKETGISWIEIE 604



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 133/536 (24%), Positives = 252/536 (47%), Gaps = 23/536 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDME-KKFSKFSLSTVLKGFA 62
           A +VF  MP  + +SWN+ ++G   +GD +    +F  + +    +F + +L+TVL    
Sbjct: 108 ATKVFDHMPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQATLTTVLTACD 167

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
              +    +++H++    G   +  +  +L+  Y +CG   +  +VF  + + +VV W A
Sbjct: 168 KPEFCYVSKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTA 227

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I+ L Q    +E+ K+F  MR+  V PN     S + A +     R G  IH ++ K G
Sbjct: 228 VISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLG 287

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
              D  + +AL+ MY + G +    ++FE+    D VS   +          ++ +++F 
Sbjct: 288 VHFDLCIESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFV 347

Query: 243 QMLLKG--FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           +M+  G    PNM +   IL      + +  GKQ+H+  IK S   N+ V   L++MY K
Sbjct: 348 KMVKNGVVIDPNMIS--AILGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSK 405

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L+D+   F  +  ++  ++ ++I ++A+ G    AL+ + +MRLEG+   + T  S 
Sbjct: 406 CGDLDDSIKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLSL 465

Query: 361 LNGCSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
           L+ C+ V  +  G   L S+A   G    M     +V M  + G +++A+   +    + 
Sbjct: 466 LHACAHVGLVEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRAGLLNEAKKFIERLPEKP 525

Query: 420 -TASWNMMIGGYVKHG---LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
               W  ++G    HG   +G+ A     +   E   P    ++++ +  S  G   + K
Sbjct: 526 GILVWQALLGACSIHGNSEMGKYAANQLFLQAPESPAP----YILLANIYSSEG---KWK 578

Query: 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLG 531
           +   +IKK+  +  T +     I+I        +I +F+ E ++ P+A +   +LG
Sbjct: 579 ERARTIKKMKDMGVTKETGISWIEIE------KQIHSFVVEDRMHPHAEIIYGVLG 628


>gi|357143265|ref|XP_003572861.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Brachypodium distachyon]
          Length = 697

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 187/600 (31%), Positives = 312/600 (52%), Gaps = 6/600 (1%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           LA+ +F  +P       NALL  +  +      + L   ++    +   F+LS +LK  A
Sbjct: 54  LARHLFDEIPVPTPRLANALLRAHVRARQWCDALLLIPCLR---VRPDAFTLSLLLKACA 110

Query: 63  NSGYIKAGQVVHAMAIRLGCAL-DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
               +  G+ +HA+AIR   A  D F++ +LV MY+KC     ++  +    +PD+V   
Sbjct: 111 MLPALAHGRALHALAIRSCTAYTDAFVAAALVHMYAKCRGMVGSINAYNAFSEPDMVLRT 170

Query: 122 AIITCLDQQGCCQEAAKIFNL-MRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
           +++T  +Q     EA + F+  +      P+   L S++ A  +  D   G++ HA + +
Sbjct: 171 SMVTGYEQNRMAAEALEFFSRHVVGQGFMPSPVTLVSVISAAAQLKDVLNGQACHAFVIR 230

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             FE D ++ NA++  YM  G V    R+FE +  +D V+W+ + + +       + L  
Sbjct: 231 NNFEYDLVLVNAILGFYMRIGAVQAARRLFEGMTEKDVVTWSCMVTGYVQSGDICEALTA 290

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           + +M+  G KPN  T + +++ACS   D+  G+++H   +K   +    V T+LVDMY K
Sbjct: 291 YKKMVEAGIKPNAVTVVSVVQACSLAPDIEEGRRVHDIAVKIGCELEMTVATALVDMYMK 350

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
             C E+A   F  ++ KD  A+  +I+ + Q G  + +++ F+ M   G   +  T+   
Sbjct: 351 CSCHEEAMQLFCRMSKKDAVAWAVVISGFTQNGLPDESMRVFKCMLFGGPFPDAVTMVKV 410

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L  CS    +     LH   V TG    +FV+ ALV +Y+KCG++  A  VF+ +  +D 
Sbjct: 411 LAACSESGVMRQAFCLHGYLVITGFCDKIFVAAALVDLYSKCGNLGCAVRVFESAMEKDV 470

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
             W+ MI GY  HGLG++A+E F+MM+     P+ +TFV VLSACSH GL++EGK+ F S
Sbjct: 471 VLWSSMISGYGVHGLGQQAVELFQMMVASSVKPNSLTFVSVLSACSHSGLVQEGKRIFES 530

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + ++YG+ P   H + M+D+LGRAG+  E    +       +A  W  LL AC  H + E
Sbjct: 531 MTQVYGVVPNAVHHSAMVDLLGRAGELQEAAKLLHGNG-RADAHTWCALLAACRAHHDTE 589

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           + E  A KLL+L+P     Y   ++I      W+     R ++  +G+ K P CS +E++
Sbjct: 590 MSEVVAAKLLKLDPDHAGYYNLLNNIYTFDENWSSAKENRNIIRDRGLNKVPGCSAVELN 649



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 178/339 (52%), Gaps = 1/339 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+R+F+ M E +VV+W+ ++ GY +SGD  + +  +  M +   K +  ++ +V++ 
Sbjct: 253 VQAARRLFEGMTEKDVVTWSCMVTGYVQSGDICEALTAYKKMVEAGIKPNAVTVVSVVQA 312

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            + +  I+ G+ VH +A+++GC L+  ++ +LVDMY KC   + A+++F R+   D VAW
Sbjct: 313 CSLAPDIEEGRRVHDIAVKIGCELEMTVATALVDMYMKCSCHEEAMQLFCRMSKKDAVAW 372

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+   Q G   E+ ++F  M      P+   +  ++ A +E+G  R    +H  +  
Sbjct: 373 AVVISGFTQNGLPDESMRVFKCMLFGGPFPDAVTMVKVLAACSESGVMRQAFCLHGYLVI 432

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GF     V  ALV +Y + G +    RVFE+   +D V W+++ S +  +    Q + +
Sbjct: 433 TGFCDKIFVAAALVDLYSKCGNLGCAVRVFESAMEKDVVLWSSMISGYGVHGLGQQAVEL 492

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL-HAHTIKHSLDGNHVVGTSLVDMYD 299
           F  M+    KPN  TF+ +L ACS    V  GK++  + T  + +  N V  +++VD+  
Sbjct: 493 FQMMVASSVKPNSLTFVSVLSACSHSGLVQEGKRIFESMTQVYGVVPNAVHHSAMVDLLG 552

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMA 338
           ++G L++A          D   + A++ +     + EM+
Sbjct: 553 RAGELQEAAKLLHGNGRADAHTWCALLAACRAHHDTEMS 591


>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
 gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
          Length = 815

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 176/600 (29%), Positives = 313/600 (52%), Gaps = 2/600 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + +A+R+F    E  VV+W  ++  Y++S        LF  M     +    +  T+L G
Sbjct: 90  LTVARRIFDDTDERTVVAWTTMIGAYSKSNRFGDAFKLFAEMHRSGSQPDYVTYITLLTG 149

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +    K     HA  ++LG  L+  +  +L+D Y K G  D+A ++F  +   D V++
Sbjct: 150 CNDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMCGWDSVSF 209

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +IT     G  +EA ++F  M+    KP+ F   +++ A+    D   G+ IH  + K
Sbjct: 210 NVMITGYANNGLNEEAIELFVEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGFVVK 269

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             F  +  VGNA +  Y ++  V+   ++F  +   D VS+N + + +       + + +
Sbjct: 270 TSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDL 329

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F ++    F      F  +L   +S  D+  G+QLHA  +    D +  V  SLVDMY K
Sbjct: 330 FQELQFTTFDRKNFPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAK 389

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G  E+A   F  L+++    +TA+I++  Q G  E  LK F +MR   + +++ T A  
Sbjct: 390 CGKFEEADRIFLRLSSRSTVPWTAMISANVQRGLHENGLKLFYEMRRANVSADQATFACV 449

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L   + +A++  G+ LHS  +++G  ++++   AL+ MYA C SI DA   F+  + R+ 
Sbjct: 450 LKASANLASILLGKQLHSCVIRSG-FMNVYSGCALLDMYANCASIKDAIKTFEEMSERNV 508

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            +WN ++  Y ++G G+  L++F  M+  GY PD ++F+ +L+ACSH  L+EEG K+F+ 
Sbjct: 509 VTWNALLSAYAQNGDGKGTLKSFEEMIMSGYQPDSVSFLCILTACSHCRLVEEGLKYFND 568

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +  +Y + P  +H+  M+D L R+G+F E E  + +    P+ +VW ++L +C  H N  
Sbjct: 569 MSGVYNLAPKREHYTAMVDALCRSGRFDEAEKLMGQMPFEPDEIVWTSVLNSCRIHKNYA 628

Query: 541 LDEKDAEKLLELEP-KMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           L  K A +L  ++  +  + YV  S+I A  G+W+    V+  +  +G++K P+ SW+E+
Sbjct: 629 LARKAAGQLFNMKVLRDAAPYVTMSNIFAEAGQWDSVVKVKKAMRDRGVRKLPAYSWVEI 688



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 132/495 (26%), Positives = 223/495 (45%), Gaps = 21/495 (4%)

Query: 50  SKFSLSTVLKGFANSGYI-KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKV 108
           S+F+   ++K  +  G + +A Q++  M  R   ++D  +S      Y K G    A ++
Sbjct: 44  SRFNF--MIKDLSERGQLCQARQLLDQMPNRNSFSIDIIISG-----YVKSGNLTVARRI 96

Query: 109 FYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ 168
           F    +  VVAW  +I    +     +A K+F  M  S  +P+     +L+    +    
Sbjct: 97  FDDTDERTVVAWTTMIGAYSKSNRFGDAFKLFAEMHRSGSQPDYVTYITLLTGCNDLEVA 156

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228
           +     HA I K G   +  V N L+  Y + G +    R+F  +   DSVS+N + + +
Sbjct: 157 KELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMCGWDSVSFNVMITGY 216

Query: 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH 288
            +    ++ + +F +M   GFKP+  TF  ++ A   L D  FG+Q+H   +K S   N 
Sbjct: 217 ANNGLNEEAIELFVEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFIRNV 276

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
            VG + +D Y K  C+ +    F+ +   D  +Y  IIT+YA  G+ + ++  F++++  
Sbjct: 277 FVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQELQFT 336

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
                 F   + L+  +    L  GR LH+  V +    D  VS +LV MYAKCG  ++A
Sbjct: 337 TFDRKNFPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGKFEEA 396

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
           + +F   + R T  W  MI   V+ GL E  L+ F  M       D+ TF  VL A +++
Sbjct: 397 DRIFLRLSSRSTVPWTAMISANVQRGLHENGLKLFYEMRRANVSADQATFACVLKASANL 456

Query: 469 GLIEEGKKHFSSIKK-----IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNA 523
             I  GK+  S + +     +Y     +  +A    I      F E+           N 
Sbjct: 457 ASILLGKQLHSCVIRSGFMNVYSGCALLDMYANCASIKDAIKTFEEMSE--------RNV 508

Query: 524 LVWENLLGACSWHGN 538
           + W  LL A + +G+
Sbjct: 509 VTWNALLSAYAQNGD 523


>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 853

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 179/601 (29%), Positives = 312/601 (51%), Gaps = 1/601 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +++A ++F  + + + V WN +LNGYA+ G    V+  F  M+  +   +  +   VL  
Sbjct: 185 IDVAGKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIKGFSLMRMDQISPNAVTFDCVLSV 244

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+   I  G  +H + +  G   +  +  SL+ MYSKCG  D+A+K+F  +   D V W
Sbjct: 245 CASKLLIDLGVQLHGLVVVSGLDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMSRADTVTW 304

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+   Q G  +E+   F  M  S V P+    +SL+ + ++  +      IH  I +
Sbjct: 305 NCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCRQIHCYIMR 364

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +    D  + +AL+  Y +   VS   ++F      D V + A+ S +         L +
Sbjct: 365 HSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALEM 424

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  ++     PN  T + IL     L  +  G++LH   IK   D    +G +++DMY K
Sbjct: 425 FRWLVKVKISPNEITLVSILPVIGGLLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAK 484

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +  A   F  L+ +D+ ++ ++IT  AQ+     A+  FR+M + GI  +  ++++ 
Sbjct: 485 CGRMNLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICFDCVSISAA 544

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L+ C+ + + + G+ +H   +K    LD++  + L+ MYAKCG++  A  VF     ++ 
Sbjct: 545 LSACANLPSESFGKAIHGFMIKHSLALDVYSESTLIDMYAKCGNLKAAMNVFDTMKEKNI 604

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDE-GYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
            SWN +I  Y  HG  + +L  F  M+++ G  PD+ITF+ ++S C H+G ++EG + F 
Sbjct: 605 VSWNSIIAAYGNHGKLKDSLCLFHEMVEKSGNRPDQITFLEIISLCCHVGDVDEGVRFFR 664

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           S+ + YGI P  +H+AC++D+ GRAG+ +E    +      P+A VW  LLGA   H N+
Sbjct: 665 SMTQDYGIQPQQEHYACVVDLFGRAGRLSEAYETVKSMPFPPDAGVWGTLLGASRLHKNV 724

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           EL +  + +L++L+P     YV  S+  A  G W   + VR+L+  + ++K P  SWIE+
Sbjct: 725 ELAKVASSRLMDLDPWNSGYYVLISNAHANTGEWESVTKVRSLMKEREVQKIPGYSWIEI 784

Query: 600 D 600
           +
Sbjct: 785 N 785



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 132/512 (25%), Positives = 236/512 (46%), Gaps = 13/512 (2%)

Query: 33  QKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSL 92
           +K + L  S + +E+   +  LS +L+  +N   ++ G+ VHA  I    + D +    +
Sbjct: 14  KKSLPLRNSYRFLEETLPR-RLSLLLQDCSNLTLLRQGKQVHAFVIVNRISGDSYTDERI 72

Query: 93  VDMYSKCGLADNALKVFYRI--KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKP 150
           + MY+ CG   N  K+FYR+  +   +  W +II+   + G   +A   +  M    V P
Sbjct: 73  LGMYAMCGSFSNCGKMFYRLDSRLSSIRPWNSIISSFVRMGLLNQALAFYFKMLCFGVSP 132

Query: 151 NQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF 210
           +      LV+A     + +  E +   +   G + +  V ++L+  Y+E G++    ++F
Sbjct: 133 DVSTFPCLVKACVALKNFKGIEFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVAGKLF 192

Query: 211 EAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVG 270
           + +  +D V WN + + +    + D  ++ F  M +    PN  TF  +L  C+S   + 
Sbjct: 193 DRVLQKDCVIWNVMLNGYAKCGASDSVIKGFSLMRMDQISPNAVTFDCVLSVCASKLLID 252

Query: 271 FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
            G QLH   +   LD    +  SL+ MY K G  +DA   F  ++  D   +  +I+ Y 
Sbjct: 253 LGVQLHGLVVVSGLDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYV 312

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
           Q+G  E +L  F +M   G+  +  T +S L   S    L   R +H   ++    LD+F
Sbjct: 313 QSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCRQIHCYIMRHSISLDIF 372

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
           +++AL+  Y KC  +  A+ +F      D   +  MI GY+ +GL   ALE FR ++   
Sbjct: 373 LTSALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALEMFRWLVKVK 432

Query: 451 YVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTE 509
             P+EIT V +L     +  ++ G++ H   IKK  G          +ID+  + G+   
Sbjct: 433 ISPNEITLVSILPVIGGLLALKLGRELHGFIIKK--GFDNRCNIGCAVIDMYAKCGRM-- 488

Query: 510 IENFITET--KLTPNALV-WENLLGACSWHGN 538
             N   E   +L+   +V W +++  C+   N
Sbjct: 489 --NLAYEIFGRLSKRDIVSWNSMITRCAQSDN 518


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 179/602 (29%), Positives = 310/602 (51%), Gaps = 2/602 (0%)

Query: 1   MELAKRVFKSMPEL-NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           M  A+RVF +MP   NV  WN ++ GYA++ + ++ + LF  M ++     + +LS +LK
Sbjct: 359 MGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLK 418

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
                   + G V H   ++LG      +  +L+  Y+K  + DNA+ VF R+   D ++
Sbjct: 419 CITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTIS 478

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W ++I+     G   EA ++F  M     + +   L S++ A   +     G  +H    
Sbjct: 479 WNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSV 538

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K G   +T + NAL+ MY         +++F  +A ++ VSW A+ + +      D+   
Sbjct: 539 KTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAG 598

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +  +M+L G KP++     +L   +    +  GK +H + I++ ++    V  +L++MY 
Sbjct: 599 LLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALMEMYV 658

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
               +E+A + FD + NKD+ ++  +I  Y++   A  +   F  M L+  K N  T+  
Sbjct: 659 NCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANESFSLFSDMLLQ-FKPNTVTMTC 717

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L   + +++L  GR +H+ A++ G L D + S ALV MY KCG++  A  +F     ++
Sbjct: 718 ILPAVASISSLERGREIHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVLFDRLTKKN 777

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SW +MI GY  HG G+ A+  F  M   G  PD  +F  +L AC H GL  EG K F+
Sbjct: 778 LISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAILYACCHSGLTAEGWKFFN 837

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           +++K Y I P +KH+ C++D+L   G   E   FI    + P++ +W +LL  C  H ++
Sbjct: 838 AMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIESMPIEPDSSIWVSLLHGCRIHRDV 897

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +L EK A+++ +LEP+    YV  ++I A   RW     ++  +  +G+++   CSWIEV
Sbjct: 898 KLAEKVADRVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGCSWIEV 957

Query: 600 DG 601
            G
Sbjct: 958 RG 959



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 154/578 (26%), Positives = 280/578 (48%), Gaps = 22/578 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A +VF SM   + +SWN+ ++GY  +G   + + LF  M     + S  ++ +VL  
Sbjct: 249 MEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPA 308

Query: 61  FANSGYIKAGQVVHAMAIRLG---------CALDKFLSCSLVDMYSKCGLADNALKVFYR 111
            A  G+   G+VVH  +++ G           +D+ L   LV MY KCG   +A +VF  
Sbjct: 309 CAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDA 368

Query: 112 IKDP-DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC 170
           +    +V  W  I+    +    +E+  +F  M E  + P++  L+ L++  T     R 
Sbjct: 369 MPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARD 428

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
           G   H  + K GF +   V NAL+S Y ++  +     VF+ + HQD++SWN++ S    
Sbjct: 429 GLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTS 488

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
                + + +F +M ++G + +  T + +L AC+       G+ +H +++K  L G   +
Sbjct: 489 NGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSL 548

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
             +L+DMY            F ++A K++ ++TA+ITSY +AG  +      ++M L+GI
Sbjct: 549 ANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGI 608

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
           K + F + S L+G +   +L  G+ +H  A++ G    + V+ AL+ MY  C ++++A  
Sbjct: 609 KPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARL 668

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           VF     +D  SWN +IGGY ++    ++   F  ML + + P+ +T   +L A + +  
Sbjct: 669 VFDHVTNKDIISWNTLIGGYSRNNFANESFSLFSDMLLQ-FKPNTVTMTCILPAVASISS 727

Query: 471 IEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENL 529
           +E G++ H  ++++  G          ++D+  + G    +   + +     N + W  +
Sbjct: 728 LERGREIHAYALRR--GFLEDSYTSNALVDMYVKCGALL-VARVLFDRLTKKNLISWTIM 784

Query: 530 LGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           +     HG      KDA  L E   +M  + V P   S
Sbjct: 785 IAGYGMHGC----GKDAVALFE---QMRGSGVEPDTAS 815



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 130/484 (26%), Positives = 235/484 (48%), Gaps = 12/484 (2%)

Query: 4   AKRVFKSMPE--LNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           A+ VF  MP    +V  W +L++ YA++GD Q+ + LF  M+         ++S VLK  
Sbjct: 149 ARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCI 208

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           A+ G I  G+V+H +  +LG      ++ +L+ +YS+CG  ++A++VF  +   D ++W 
Sbjct: 209 ASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWN 268

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           + I+     G    A  +F+ M     + +   + S++ A  E G +  G+ +H    K 
Sbjct: 269 STISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKS 328

Query: 182 G----FES-----DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS-WNALFSRFQDY 231
           G     ES     D  +G+ LV MY++ G +    RVF+A+  + +V  WN +   +   
Sbjct: 329 GLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKA 388

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
              ++ L +F QM   G  P+      +LK  + LS    G   H + +K        V 
Sbjct: 389 AEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVC 448

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
            +L+  Y KS  +++A + FD + ++D  ++ ++I+     G    A++ F +M ++G +
Sbjct: 449 NALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHE 508

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            +  TL S L  C+       GR++H  +VKTG + +  ++ AL+ MY+ C        +
Sbjct: 509 LDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQI 568

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F+  A ++  SW  MI  Y + GL +K     + M+ +G  PD      VL   +    +
Sbjct: 569 FRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESL 628

Query: 472 EEGK 475
           ++GK
Sbjct: 629 KQGK 632



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 203/414 (49%), Gaps = 15/414 (3%)

Query: 67  IKAGQVVHAMAIRLGCA--LDKFLSCSLVDMYSKCGLADNALKVFYRI--KDPDVVAWGA 122
           ++A +  HA+ +R G    +   L   LV  Y KCG    A  VF  +  +  DV  W +
Sbjct: 110 LEAARRAHAL-VRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWTS 168

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +++   + G  QE   +F  M+   V P+   ++ +++     G    GE IH ++ K G
Sbjct: 169 LMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLG 228

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
                 V NAL+++Y   G +    +VF+++  +D++SWN+  S +      D+ + +F 
Sbjct: 229 LGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFS 288

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL---------DGNHVVGTS 293
           +M  +G + +  T + +L AC+ L     GK +H +++K  L           +  +G+ 
Sbjct: 289 KMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSK 348

Query: 294 LVDMYDKSGCLEDAGVAFDSLANK-DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           LV MY K G +  A   FD++ +K ++  +  I+  YA+A E E +L  F +M   GI  
Sbjct: 349 LVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITP 408

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
           +E  L+  L   + ++   +G + H   VK G      V  AL++ YAK   ID+A  VF
Sbjct: 409 DEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVF 468

Query: 413 KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
                +DT SWN +I G   +GL  +A+E F  M  +G+  D  T + VL AC+
Sbjct: 469 DRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACA 522



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 145/305 (47%), Gaps = 17/305 (5%)

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQ--DSVSWNALFSRFQDYESPDQGLRIFYQM 244
           +++G  LV  Y++ G +     VF+ +  +  D   W +L S +       +G+ +F QM
Sbjct: 130 SVLGKRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQM 189

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
              G  P+      +LK  +SL  +  G+ +H    K  L     V  +L+ +Y + GC+
Sbjct: 190 QCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCM 249

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
           EDA   FDS+  +D  ++ + I+ Y   G  + A+  F KM  EG + +  T+ S L  C
Sbjct: 250 EDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPAC 309

Query: 365 SPVATLANGRLLHSIAVKTGHLLDM---------FVSTALVAMYAKCGSIDDAEAVFKGS 415
           + +     G+++H  ++K+G L D+          + + LV MY KCG +  A  VF   
Sbjct: 310 AELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAM 369

Query: 416 ALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS-----ACSHMG 469
             + +   WN+++GGY K    E++L  F  M + G  PDE     +L      +C+  G
Sbjct: 370 PSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDG 429

Query: 470 LIEEG 474
           L+  G
Sbjct: 430 LVAHG 434



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 117/225 (52%), Gaps = 5/225 (2%)

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDG--NHVVGTSLVDMYDKSGCLEDAGVAFD 312
           ++  +++ C     +   ++ HA  ++    G    V+G  LV  Y K G L  A + FD
Sbjct: 96  SYCAVVQLCGEERSLEAARRAHA-LVRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVFD 154

Query: 313 SLANK--DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATL 370
            +  +  D+  +T+++++YA+AG+ +  +  FR+M+  G+  +   ++  L   + + ++
Sbjct: 155 EMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSI 214

Query: 371 ANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGY 430
             G ++H +  K G      V+ AL+A+Y++CG ++DA  VF     RD  SWN  I GY
Sbjct: 215 TEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGY 274

Query: 431 VKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
             +G  ++A++ F  M  EG     +T + VL AC+ +G    GK
Sbjct: 275 FSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGK 319



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 62/153 (40%), Gaps = 7/153 (4%)

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHS-IAVKTG 384
           I    QAG+   AL+        G++S      + +  C    +L   R  H+ +   TG
Sbjct: 70  IQRLCQAGDLAAALRLLGSDGGVGVRS----YCAVVQLCGEERSLEAARRAHALVRAGTG 125

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR--DTASWNMMIGGYVKHGLGEKALEA 442
            ++   +   LV  Y KCG +  A  VF     R  D   W  ++  Y K G  ++ +  
Sbjct: 126 GIIGSVLGKRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSL 185

Query: 443 FRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           FR M   G  PD      VL   + +G I EG+
Sbjct: 186 FRQMQCCGVSPDAHAVSCVLKCIASLGSITEGE 218


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 182/581 (31%), Positives = 301/581 (51%), Gaps = 1/581 (0%)

Query: 20  NALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIR 79
           +A L   A   D    +  F +M          + +++LK  A  G +  G+ VHA    
Sbjct: 28  HARLRASAARSDLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAA 87

Query: 80  LGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAK- 138
            G   +   + +L +MY+KC    +A +VF R+   D VAW A++    + G  + A + 
Sbjct: 88  RGIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEM 147

Query: 139 IFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYM 198
           +  +  E   +P+   L S++ A             HA   + G E    V  A++  Y 
Sbjct: 148 VVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYC 207

Query: 199 ENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIV 258
           + G +     VF+ +  ++SVSWNA+   +       + L +F +M+ +G      + + 
Sbjct: 208 KCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLA 267

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKD 318
            L+AC  L  +  G ++H   ++  LD N  V  +L+ MY K   ++ A   FD L  + 
Sbjct: 268 ALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRT 327

Query: 319 LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHS 378
             ++ A+I   AQ G +E A++ F +M+LE +K + FTL S +   + ++     R +H 
Sbjct: 328 QVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHG 387

Query: 379 IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEK 438
            +++     D++V TAL+ MYAKCG ++ A  +F  +  R   +WN MI GY  HG G+ 
Sbjct: 388 YSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKA 447

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMI 498
           A+E F  M   G VP+E TF+ VLSACSH GL++EG+++F+S+K+ YG+ P ++H+  M+
Sbjct: 448 AVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMV 507

Query: 499 DILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMES 558
           D+LGRAGK  E   FI +  + P   V+  +LGAC  H N+EL E+ A+K+ EL P+   
Sbjct: 508 DLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGV 567

Query: 559 NYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            +V  ++I A    W D + VR  +   G++K P  S I++
Sbjct: 568 YHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQL 608



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 137/463 (29%), Positives = 231/463 (49%), Gaps = 5/463 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDME-KKFSKFSLSTVLKGFA 62
           A+RVF  MP  + V+WNAL+ GYA +G  +  M +   M++ E ++    +L +VL   A
Sbjct: 113 ARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACA 172

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           N+  + A +  HA AIR G      ++ +++D Y KCG    A  VF  +   + V+W A
Sbjct: 173 NARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNA 232

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I    Q G  +EA  +FN M E  V      + + ++A  E G    G  +H ++ + G
Sbjct: 233 MIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIG 292

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            +S+  V NAL++MY +  RV   S VF+ +  +  VSWNA+          +  +R+F 
Sbjct: 293 LDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFT 352

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M L+  KP+  T + ++ A + +SD    + +H ++I+  LD +  V T+L+DMY K G
Sbjct: 353 RMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCG 412

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            +  A + F+S   + +  + A+I  Y   G  + A++ F +M+  GI  NE T  S L+
Sbjct: 413 RVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLS 472

Query: 363 GCSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
            CS    +  GR    S+    G    M     +V +  + G +D+A A  +   +    
Sbjct: 473 ACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGL 532

Query: 422 S-WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           S +  M+G    H   E A E+ + + + G  P E  + V+L+
Sbjct: 533 SVYGAMLGACKLHKNVELAEESAQKIFELG--PQEGVYHVLLA 573



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 84/166 (50%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++LA  VF  +     VSWNA++ G A++G  +  + LF  M+    K   F+L +V+  
Sbjct: 313 VDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPA 372

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+       + +H  +IRL    D ++  +L+DMY+KCG  + A  +F   ++  V+ W
Sbjct: 373 LADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITW 432

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
            A+I      G  + A ++F  M+   + PN+    S++ A +  G
Sbjct: 433 NAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAG 478



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 18/160 (11%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + +A+ +F S  E +V++WNA+++GY   G G+  + LF  MK +    ++ +  +VL  
Sbjct: 414 VNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSA 473

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            +++G +  G +   +M    G         ++VD+  + G  D A     ++  DP + 
Sbjct: 474 CSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLS 533

Query: 119 AWGAIITCLDQQGCC----------QEAAKIFNLMRESSV 148
            +GA++      G C          + A KIF L  +  V
Sbjct: 534 VYGAML------GACKLHKNVELAEESAQKIFELGPQEGV 567


>gi|225457491|ref|XP_002267777.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22070
           [Vitis vinifera]
 gi|296087996|emb|CBI35279.3| unnamed protein product [Vitis vinifera]
          Length = 598

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 186/562 (33%), Positives = 293/562 (52%), Gaps = 20/562 (3%)

Query: 55  STVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
           +T+L+ FA +   + G+ +HA  I+       FL+  +++MY+KCG   +A K+F     
Sbjct: 39  ATLLRRFAETRDSQHGRALHAKLIKGPLHNSLFLNNHILNMYAKCGHLPHAHKLFDHFPH 98

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATT---ETGDQRCG 171
            + V+W  +I    Q      A  +F+ M  + V  N+F L S + A +      D   G
Sbjct: 99  RNAVSWSVLIAGFVQHNRPSCALVLFSQMHAAGVNINEFTLVSALHACSLYDNDSDNNEG 158

Query: 172 E----------SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSW 221
                       ++A + + GFE +  + N  ++  + + +++    VFEA   +D VSW
Sbjct: 159 YYYSYYLSRLYQVYAFVVRLGFEWNVFLMNVFMTALIRSRKLAEALEVFEACRGKDVVSW 218

Query: 222 NALFSRFQDY---ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAH 278
           NA+ +    +   E P      + +M  +G KP+   F  +L   ++L D G G Q+H  
Sbjct: 219 NAVMAGLVQFCCGEVPG----FWRRMCCEGVKPDNFAFSGVLSGLAALGDGGMGVQVHGQ 274

Query: 279 TIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMA 338
            +K    G   +G SLVDMY K G LE+   AF+ +  +D+  +  +       G+   A
Sbjct: 275 LVKCGHGGEVCIGNSLVDMYLKCGSLENGIKAFEEMVERDVCTWNQMAAGCLNCGKPGRA 334

Query: 339 LKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAM 398
           L+   +MR  G++ N+FTLA+ L  C+ +A+L  G+  H + +K G+ +D+ V  AL+ M
Sbjct: 335 LELIEEMRRSGVRMNKFTLATALTACANLASLEEGKKAHGLRIKLGNDVDVCVDNALLDM 394

Query: 399 YAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITF 458
           YAKCGS+ DA  VF     R   SW  MI G+ ++G   KALE F  M  EG  P+ ITF
Sbjct: 395 YAKCGSMGDALKVFGTVEARSVVSWTTMIMGFAQNGQARKALEIFEQMRAEGKAPNYITF 454

Query: 459 VVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK 518
           + VL ACS  GLI EG ++F S+ + +GI+P   H+ACM+D+LGRAG   E    I    
Sbjct: 455 ICVLYACSQGGLINEGWEYFLSMDRDHGISPGEDHYACMVDMLGRAGHIKEARELIRRMP 514

Query: 519 LTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSG 578
              + LVW+ LLGAC  HG++E     A++ L L+    S YV  S++ A    W     
Sbjct: 515 FQASVLVWQTLLGACRVHGDVETGLLAAKQALSLDKHDSSTYVVLSNMFADGRNWKGVGS 574

Query: 579 VRALLSSQGIKKEPSCSWIEVD 600
           +R L+ ++ +KK P  SWI+++
Sbjct: 575 LRELMETRDVKKMPGSSWIQLN 596



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 129/481 (26%), Positives = 213/481 (44%), Gaps = 33/481 (6%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVL----- 58
           A ++F   P  N VSW+ L+ G+ +       + LF  M       ++F+L + L     
Sbjct: 89  AHKLFDHFPHRNAVSWSVLIAGFVQHNRPSCALVLFSQMHAAGVNINEFTLVSALHACSL 148

Query: 59  --------KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFY 110
                   +G+  S Y+     V+A  +RLG   + FL    +    +      AL+VF 
Sbjct: 149 YDNDSDNNEGYYYSYYLSRLYQVYAFVVRLGFEWNVFLMNVFMTALIRSRKLAEALEVFE 208

Query: 111 RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC 170
             +  DVV+W A++  L  Q CC E    +  M    VKP+ F  + ++      GD   
Sbjct: 209 ACRGKDVVSWNAVMAGL-VQFCCGEVPGFWRRMCCEGVKPDNFAFSGVLSGLAALGDGGM 267

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
           G  +H  + K G   +  +GN+LV MY++ G +  G + FE +  +D  +WN + +   +
Sbjct: 268 GVQVHGQLVKCGHGGEVCIGNSLVDMYLKCGSLENGIKAFEEMVERDVCTWNQMAAGCLN 327

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
              P + L +  +M   G + N  T    L AC++L+ +  GK+ H   IK   D +  V
Sbjct: 328 CGKPGRALELIEEMRRSGVRMNKFTLATALTACANLASLEEGKKAHGLRIKLGNDVDVCV 387

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
             +L+DMY K G + DA   F ++  + + ++T +I  +AQ G+A  AL+ F +MR EG 
Sbjct: 388 DNALLDMYAKCGSMGDALKVFGTVEARSVVSWTTMIMGFAQNGQARKALEIFEQMRAEGK 447

Query: 351 KSNEFTLASCLNGCSPVATLANGRLL-------HSIAVKTGHLLDMFVSTALVAMYAKCG 403
             N  T    L  CS    +  G          H I+    H         +V M  + G
Sbjct: 448 APNYITFICVLYACSQGGLINEGWEYFLSMDRDHGISPGEDHY------ACMVDMLGRAG 501

Query: 404 SIDDAEAVFKGSALRDTA-SWNMMIGGYVKHGLGEKALEAFR--MMLDEGYVPDEITFVV 460
            I +A  + +    + +   W  ++G    HG  E  L A +  + LD+    D  T+VV
Sbjct: 502 HIKEARELIRRMPFQASVLVWQTLLGACRVHGDVETGLLAAKQALSLDK---HDSSTYVV 558

Query: 461 V 461
           +
Sbjct: 559 L 559



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 86/166 (51%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E   + F+ M E +V +WN +  G    G   + + L   M+    + +KF+L+T L  
Sbjct: 300 LENGIKAFEEMVERDVCTWNQMAAGCLNCGKPGRALELIEEMRRSGVRMNKFTLATALTA 359

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            AN   ++ G+  H + I+LG  +D  +  +L+DMY+KCG   +ALKVF  ++   VV+W
Sbjct: 360 CANLASLEEGKKAHGLRIKLGNDVDVCVDNALLDMYAKCGSMGDALKVFGTVEARSVVSW 419

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
             +I    Q G  ++A +IF  MR     PN      ++ A ++ G
Sbjct: 420 TTMIMGFAQNGQARKALEIFEQMRAEGKAPNYITFICVLYACSQGG 465



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 100/227 (44%), Gaps = 14/227 (6%)

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
           +  +L+  +   D   G+ LHA  IK  L  +  +   +++MY K G L  A   FD   
Sbjct: 38  YATLLRRFAETRDSQHGRALHAKLIKGPLHNSLFLNNHILNMYAKCGHLPHAHKLFDHFP 97

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR- 374
           +++  +++ +I  + Q      AL  F +M   G+  NEFTL S L+ CS     ++   
Sbjct: 98  HRNAVSWSVLIAGFVQHNRPSCALVLFSQMHAAGVNINEFTLVSALHACSLYDNDSDNNE 157

Query: 375 ------------LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
                        +++  V+ G   ++F+    +    +   + +A  VF+    +D  S
Sbjct: 158 GYYYSYYLSRLYQVYAFVVRLGFEWNVFLMNVFMTALIRSRKLAEALEVFEACRGKDVVS 217

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
           WN ++ G V+   GE     +R M  EG  PD   F  VLS  + +G
Sbjct: 218 WNAVMAGLVQFCCGEVP-GFWRRMCCEGVKPDNFAFSGVLSGLAALG 263


>gi|302822082|ref|XP_002992701.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
 gi|300139547|gb|EFJ06286.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
          Length = 941

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 185/574 (32%), Positives = 304/574 (52%), Gaps = 10/574 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMK-------DME--KKFSKFSL 54
           A RVF S+P  + VSWNA+++ YA+ G  +  + L   M+       D+         S 
Sbjct: 365 ASRVFSSIPCKDAVSWNAIVSAYAKQGLFRDAIFLSRQMQVEGFVPDDITFITILYSCSQ 424

Query: 55  STVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
           S +LK + NS  +  G+ VH+  I  G   D +L   LV MY +CG  D+A   F  I  
Sbjct: 425 SALLKQYGNSKSLTDGRQVHSQMISNGLDGDTYLGNLLVQMYGRCGSLDDARAAFQGIHQ 484

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
            +V +W  +I+ L Q G   E  ++   M     + N+    SL+ A + TGD   G++I
Sbjct: 485 RNVFSWTILISLLVQNGEASEGLELLKSMDLEGTEANKITFISLLGACSVTGDLSLGKTI 544

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H  I   G ESD +  NAL++MY     +     VFE +  +D VSW  + S +     P
Sbjct: 545 HERIRTKGLESDIITSNALLNMYTTCESLDEARLVFERMVFRDVVSWTIIISAYAHAGYP 604

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
            + L+++ +M  +  +P+  T I +L+AC+SL  +  GK +H   +   ++ +  VGT++
Sbjct: 605 LEALQLYRRMEQEFSRPDAVTLISVLEACASLRALVEGKAIHERIVASGVETDVFVGTAV 664

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           V  Y K   +EDA   FD + +KD+  + A+I +YAQ    E A   + +M    +  N+
Sbjct: 665 VSFYGKCEAVEDARQVFDRILDKDIVCWNAMIGAYAQNHCEEKAFALYLEMVENQMPPND 724

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAK-CGSIDDAEAVFK 413
            TL + L+ CS    +  G  LH  A   G+L    V  AL+ MYAK CG+++ A+  F+
Sbjct: 725 VTLITLLDSCSSTCKMERGSSLHREAAARGYLSHTSVVNALINMYAKCCGNLEAAQTAFE 784

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
             A ++  SW+ ++  Y ++G  ++A   F  M  +G +P+ +TF  VL ACSH GL +E
Sbjct: 785 SVASKNVVSWSSIVAAYARNGEEDRARNLFWTMNQDGVLPNIVTFTSVLHACSHAGLADE 844

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           G  +F S++  + + PT +H+ CM+++L ++G+  +  +F++   + P+A  W +LLGAC
Sbjct: 845 GWSYFLSMQGDHHLEPTPEHYGCMVNLLAKSGRVKQAASFMSAMPVQPDASAWRSLLGAC 904

Query: 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
             H + E     A++LL+ EP+  + YV   +IS
Sbjct: 905 EVHTDKEYGALAAKQLLDAEPRNSAAYVLLYNIS 938



 Score =  229 bits (583), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 129/405 (31%), Positives = 206/405 (50%), Gaps = 4/405 (0%)

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
           G+ +HA  +  G      LS SLV MY KCG  + A   F R+ + D+++W A+IT   Q
Sbjct: 29  GKQIHARILSSGLGASVLLSNSLVYMYGKCGSVEEARNAFDRMPERDLISWNAMITVYAQ 88

Query: 130 QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
             C ++A +++   R    KP++    SL+ A   +GD + G  +H       F SD +V
Sbjct: 89  HECGKQAIQLYAYSRLEGTKPDEVTFASLLNACFASGDLKFGRMLHEHFLGTSFVSDQIV 148

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
            N L+SMY + G +   + VFE     D  +W  + + +  +   +     + +M  +G 
Sbjct: 149 CNGLISMYSDCGSLDDATAVFEWSFRPDVCTWTTVIAAYTRHGKLECAFATWSKMHQEGL 208

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK-SGCLEDAG 308
           + N  TF+ +L  CSSL  +  GK +H   +   LD +  +  SL+ MY K S   ++A 
Sbjct: 209 RSNEITFLTVLDTCSSLEVLETGKHVHRLALGSGLDFSLRMENSLISMYGKCSRHPDEAR 268

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
             F  ++   + +++A I +Y Q  E   A+K F  M LEG+K N  TL S L  C+ V 
Sbjct: 269 EVFLRISRPSVISWSAFIAAYGQHWE---AIKTFELMNLEGVKPNATTLTSVLRACATVG 325

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
               GR +H++ +   +  +  V  A  ++YAKC  + DA  VF     +D  SWN ++ 
Sbjct: 326 AHEQGRRIHALVLAGPYTQNTTVLNAAASLYAKCSRVADASRVFSSIPCKDAVSWNAIVS 385

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
            Y K GL   A+   R M  EG+VPD+ITF+ +L +CS   L+++
Sbjct: 386 AYAKQGLFRDAIFLSRQMQVEGFVPDDITFITILYSCSQSALLKQ 430



 Score =  228 bits (581), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 160/611 (26%), Positives = 291/611 (47%), Gaps = 25/611 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+  F  MPE +++SWNA++  YA+   G++ + L+   +    K  + + +++L  
Sbjct: 61  VEEARNAFDRMPERDLISWNAMITVYAQHECGKQAIQLYAYSRLEGTKPDEVTFASLLNA 120

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              SG +K G+++H   +      D+ +   L+ MYS CG  D+A  VF     PDV  W
Sbjct: 121 CFASGDLKFGRMLHEHFLGTSFVSDQIVCNGLISMYSDCGSLDDATAVFEWSFRPDVCTW 180

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I    + G  + A   ++ M +  ++ N+    +++   +       G+ +H +   
Sbjct: 181 TTVIAAYTRHGKLECAFATWSKMHQEGLRSNEITFLTVLDTCSSLEVLETGKHVHRLALG 240

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSR-VFEAIAHQDSVSWNALFSRF-QDYESPDQGL 238
            G +    + N+L+SMY +  R    +R VF  I+    +SW+A  + + Q +E+    +
Sbjct: 241 SGLDFSLRMENSLISMYGKCSRHPDEAREVFLRISRPSVISWSAFIAAYGQHWEA----I 296

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           + F  M L+G KPN  T   +L+AC+++     G+++HA  +      N  V  +   +Y
Sbjct: 297 KTFELMNLEGVKPNATTLTSVLRACATVGAHEQGRRIHALVLAGPYTQNTTVLNAAASLY 356

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K   + DA   F S+  KD  ++ AI+++YA+ G    A+   R+M++EG   ++ T  
Sbjct: 357 AKCSRVADASRVFSSIPCKDAVSWNAIVSAYAKQGLFRDAIFLSRQMQVEGFVPDDITFI 416

Query: 359 SCLNGCSPVA---------TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           + L  CS  A         +L +GR +HS  +  G   D ++   LV MY +CGS+DDA 
Sbjct: 417 TILYSCSQSALLKQYGNSKSLTDGRQVHSQMISNGLDGDTYLGNLLVQMYGRCGSLDDAR 476

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
           A F+G   R+  SW ++I   V++G   + LE  + M  EG   ++ITF+ +L ACS  G
Sbjct: 477 AAFQGIHQRNVFSWTILISLLVQNGEASEGLELLKSMDLEGTEANKITFISLLGACSVTG 536

Query: 470 LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENL 529
            +  GK     I+   G+   I     ++++        E    + E  +  + + W  +
Sbjct: 537 DLSLGKTIHERIRT-KGLESDIITSNALLNMYTTCESLDE-ARLVFERMVFRDVVSWTII 594

Query: 530 LGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589
           + A + H    L+       L+L  +ME  +  P  ++         + +RAL+  + I 
Sbjct: 595 ISAYA-HAGYPLEA------LQLYRRMEQEFSRPDAVTLI-SVLEACASLRALVEGKAIH 646

Query: 590 KEPSCSWIEVD 600
           +    S +E D
Sbjct: 647 ERIVASGVETD 657



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 104/330 (31%), Positives = 172/330 (52%), Gaps = 4/330 (1%)

Query: 148 VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGS 207
           V  ++  L + V A    GD   G+ IHA I   G  +  L+ N+LV MY + G V    
Sbjct: 6   VPGDEITLLNAVSACAALGDSLQGKQIHARILSSGLGASVLLSNSLVYMYGKCGSVEEAR 65

Query: 208 RVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLS 267
             F+ +  +D +SWNA+ + +  +E   Q ++++    L+G KP+  TF  +L AC +  
Sbjct: 66  NAFDRMPERDLISWNAMITVYAQHECGKQAIQLYAYSRLEGTKPDEVTFASLLNACFASG 125

Query: 268 DVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIIT 327
           D+ FG+ LH H +  S   + +V   L+ MY   G L+DA   F+     D+  +T +I 
Sbjct: 126 DLKFGRMLHEHFLGTSFVSDQIVCNGLISMYSDCGSLDDATAVFEWSFRPDVCTWTTVIA 185

Query: 328 SYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL 387
           +Y + G+ E A   + KM  EG++SNE T  + L+ CS +  L  G+ +H +A+ +G   
Sbjct: 186 AYTRHGKLECAFATWSKMHQEGLRSNEITFLTVLDTCSSLEVLETGKHVHRLALGSGLDF 245

Query: 388 DMFVSTALVAMYAKCGS-IDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM 446
            + +  +L++MY KC    D+A  VF   +     SW+  I  Y +H    +A++ F +M
Sbjct: 246 SLRMENSLISMYGKCSRHPDEAREVFLRISRPSVISWSAFIAAYGQHW---EAIKTFELM 302

Query: 447 LDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
             EG  P+  T   VL AC+ +G  E+G++
Sbjct: 303 NLEGVKPNATTLTSVLRACATVGAHEQGRR 332



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 98/293 (33%), Positives = 152/293 (51%), Gaps = 1/293 (0%)

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M L+G   +  T +  + AC++L D   GKQ+HA  +   L  + ++  SLV MY K G 
Sbjct: 1   MDLEGVPGDEITLLNAVSACAALGDSLQGKQIHARILSSGLGASVLLSNSLVYMYGKCGS 60

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +E+A  AFD +  +DL ++ A+IT YAQ    + A++ +   RLEG K +E T AS LN 
Sbjct: 61  VEEARNAFDRMPERDLISWNAMITVYAQHECGKQAIQLYAYSRLEGTKPDEVTFASLLNA 120

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C     L  GR+LH   + T  + D  V   L++MY+ CGS+DDA AVF+ S   D  +W
Sbjct: 121 CFASGDLKFGRMLHEHFLGTSFVSDQIVCNGLISMYSDCGSLDDATAVFEWSFRPDVCTW 180

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
             +I  Y +HG  E A   +  M  EG   +EITF+ VL  CS + ++E G KH   +  
Sbjct: 181 TTVIAAYTRHGKLECAFATWSKMHQEGLRSNEITFLTVLDTCSSLEVLETG-KHVHRLAL 239

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
             G+  +++    +I + G+  +  +    +      P+ + W   + A   H
Sbjct: 240 GSGLDFSLRMENSLISMYGKCSRHPDEAREVFLRISRPSVISWSAFIAAYGQH 292



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 166/320 (51%), Gaps = 22/320 (6%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSK---FSLSTV 57
           ++ A+ VF+ M   +VVSW  +++ YA +G   + + L+   + ME++FS+    +L +V
Sbjct: 573 LDEARLVFERMVFRDVVSWTIIISAYAHAGYPLEALQLY---RRMEQEFSRPDAVTLISV 629

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
           L+  A+   +  G+ +H   +  G   D F+  ++V  Y KC   ++A +VF RI D D+
Sbjct: 630 LEACASLRALVEGKAIHERIVASGVETDVFVGTAVVSFYGKCEAVEDARQVFDRILDKDI 689

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           V W A+I    Q  C ++A  ++  M E+ + PN   L +L+ + + T     G S+H  
Sbjct: 690 VCWNAMIGAYAQNHCEEKAFALYLEMVENQMPPNDVTLITLLDSCSSTCKMERGSSLHRE 749

Query: 178 ICKYGFESDTLVGNALVSMYME-NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
               G+ S T V NAL++MY +  G +      FE++A ++ VSW+++ + +      D+
Sbjct: 750 AAARGYLSHTSVVNALINMYAKCCGNLEAAQTAFESVASKNVVSWSSIVAAYARNGEEDR 809

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACS--SLSDVGFGKQLHAHTIKHSLDGNHVVGTS- 293
              +F+ M   G  PN+ TF  +L ACS   L+D G+   L       S+ G+H +  + 
Sbjct: 810 ARNLFWTMNQDGVLPNIVTFTSVLHACSHAGLADEGWSYFL-------SMQGDHHLEPTP 862

Query: 294 -----LVDMYDKSGCLEDAG 308
                +V++  KSG ++ A 
Sbjct: 863 EHYGCMVNLLAKSGRVKQAA 882


>gi|225216882|gb|ACN85180.1| EMB2261 putative [Oryza nivara]
 gi|225216899|gb|ACN85196.1| EMB2261 putative [Oryza rufipogon]
          Length = 615

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 173/538 (32%), Positives = 302/538 (56%), Gaps = 7/538 (1%)

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLA-DNALKVFYRIKDPDVVAWGAIITC 126
           + G  +H  A R G   D++L+ +L+  Y +      +AL+ F  +   DVVA  +I+  
Sbjct: 55  RLGCCLHGRAARAGLLADRYLANALLAFYVRLPRHLPHALRAFDDLPRRDVVAHSSILAA 114

Query: 127 LDQQGCCQEA-AKIFNLMR--ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
             + G  + A A + +++   +  V PN   L++ V+A     D+  G  +H  +   GF
Sbjct: 115 FLRAGMPRRALASLRDMLAGADDDVSPNAHALSAAVKACAVLRDRNAGACLHGSVLVRGF 174

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D +V ++LV MY          +VFE +   D + + +L S F   +  ++ +R F  
Sbjct: 175 GDDGVVLSSLVDMYGHVAAPGDARKVFEEMRAPDGICYTSLISAFVRNDWFEEAVRWFRS 234

Query: 244 MLL-KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           ML+  G +P+ CTF  ++ A  +      G+Q HA  +   L GN +V +S +DMY K G
Sbjct: 235 MLMMNGVRPDGCTFGSMMTALGNSKRGSQGRQAHAQVVTRGLCGNVIVESSTLDMYAKCG 294

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            + +A   FD +  ++  +  A++  Y Q GE E  +  FR+M  E    + ++L + L 
Sbjct: 295 LMVEAHKVFDRMQVRNEVSRCALLGGYCQNGEYEKVIALFREMDKE--DGDWYSLGTVLR 352

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+ ++++  G+ +H   ++     D+ V +ALV +YAKCG++D A +VF+ S +R+T +
Sbjct: 353 ACAGLSSVKPGKEIHCRFLRMAGWRDVVVESALVDLYAKCGAVDYAYSVFEASTVRNTIT 412

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN MIGG+ ++G GE+A+  F  M+ EG  PD I+F+ VL ACSH G++E+G+ +F+S+ 
Sbjct: 413 WNAMIGGFAQNGHGERAINLFNRMVREGPRPDYISFIGVLFACSHTGMVEQGRNYFNSMC 472

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           K YGI P I+H+ CM+D+  R     E E+ I ++    ++ +W ++LGA + H N ++ 
Sbjct: 473 KDYGIAPGIEHYNCMVDLFSRVELLEEAEDLINKSPFRNDSSLWADILGASATHSNPDVA 532

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           E+ ++K++ELEP+   +Y+   ++  T GRW D   +R L+ S+ +KKEP  SW++ +
Sbjct: 533 ERVSKKMMELEPQYHLSYILLENVYRTVGRWEDALEIRRLMESRKVKKEPGMSWVDAN 590



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/454 (22%), Positives = 212/454 (46%), Gaps = 14/454 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDM------EKKFSKFSLSTV 57
           A R F  +P  +VV+ +++L  +  +G  ++ +    S++DM      +   +  +LS  
Sbjct: 93  ALRAFDDLPRRDVVAHSSILAAFLRAGMPRRAL---ASLRDMLAGADDDVSPNAHALSAA 149

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
           +K  A      AG  +H   +  G   D  +  SLVDMY       +A KVF  ++ PD 
Sbjct: 150 VKACAVLRDRNAGACLHGSVLVRGFGDDGVVLSSLVDMYGHVAAPGDARKVFEEMRAPDG 209

Query: 118 VAWGAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
           + + ++I+   +    +EA + F +++  + V+P+     S++ A   +     G   HA
Sbjct: 210 ICYTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNSKRGSQGRQAHA 269

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
            +   G   + +V ++ + MY + G +    +VF+ +  ++ VS  AL   +      ++
Sbjct: 270 QVVTRGLCGNVIVESSTLDMYAKCGLMVEAHKVFDRMQVRNEVSRCALLGGYCQNGEYEK 329

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            + +F +M       +  +   +L+AC+ LS V  GK++H   ++ +   + VV ++LVD
Sbjct: 330 VIALFREM--DKEDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMAGWRDVVVESALVD 387

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           +Y K G ++ A   F++   ++   + A+I  +AQ G  E A+  F +M  EG + +  +
Sbjct: 388 LYAKCGAVDYAYSVFEASTVRNTITWNAMIGGFAQNGHGERAINLFNRMVREGPRPDYIS 447

Query: 357 LASCLNGCSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
               L  CS    +  GR   +S+    G    +     +V ++++   +++AE +   S
Sbjct: 448 FIGVLFACSHTGMVEQGRNYFNSMCKDYGIAPGIEHYNCMVDLFSRVELLEEAEDLINKS 507

Query: 416 ALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
             R D++ W  ++G    H   + A    + M++
Sbjct: 508 PFRNDSSLWADILGASATHSNPDVAERVSKKMME 541



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 56/106 (52%), Gaps = 1/106 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  VF++    N ++WNA++ G+A++G G++ ++LF  M     +    S   VL  
Sbjct: 395 VDYAYSVFEASTVRNTITWNAMIGGFAQNGHGERAINLFNRMVREGPRPDYISFIGVLFA 454

Query: 61  FANSGYIKAGQ-VVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNA 105
            +++G ++ G+   ++M    G A        +VD++S+  L + A
Sbjct: 455 CSHTGMVEQGRNYFNSMCKDYGIAPGIEHYNCMVDLFSRVELLEEA 500


>gi|302817788|ref|XP_002990569.1| hypothetical protein SELMODRAFT_131810 [Selaginella moellendorffii]
 gi|300141737|gb|EFJ08446.1| hypothetical protein SELMODRAFT_131810 [Selaginella moellendorffii]
          Length = 564

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 181/565 (32%), Positives = 293/565 (51%), Gaps = 12/565 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLK 59
           +E A+ VF S+   +  SWN +L  Y  +G G + + LF  M D+   +  + +  T   
Sbjct: 8   VEEARAVFNSIKRSSCFSWNLMLGAYCNNGSGDQALELFKQMVDVHGIRADRVTFVTAAT 67

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             +  G ++ G+  H+  +  G      L  +L++MY +CG A+ A K+F RI   +VV 
Sbjct: 68  ACSLVGSLEEGKQFHSRFVESGLESSLILDSALMNMYGRCGSAEEARKIFDRIPVKNVVC 127

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  +I    Q G   EA +++  M   ++KP++    +++ A T       G  IH  + 
Sbjct: 128 WNVMIAAYAQNGHFSEALELYYDM---NLKPDRVTFLNVLHACT----LESGRLIHQDVV 180

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
             G E D  VGNALV+M+ + G +S   RVF+ IA +D +SWNAL S +       +   
Sbjct: 181 SAGLERDKFVGNALVNMFGKCGSLSDAKRVFDRIAFRDVISWNALMSVYIQQGHRKEAFE 240

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F +M   G +PN  T++ +L ACSSL  +   +++H       L+ +  VG +L+  Y+
Sbjct: 241 LFKRMDKAGLQPNSVTYLSLLPACSSLEQL---REIHQELADQGLEQDEQVGNTLITAYN 297

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K   LED+   F+ +  + + ++T +I    + G    AL  +R+M +EG++ +   L  
Sbjct: 298 KFS-LEDSVAVFERMKRRSVVSWTCMIMGMVEHGYGGRALDLYREMVVEGVRPDAVALVC 356

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L+ C+ V  LA GR +H +   T  + D+FV+TA+V MY KCG   +AEAVF+G     
Sbjct: 357 ALDACTSVENLAEGRKIHRLVEGTTMVTDVFVATAVVNMYGKCGKFAEAEAVFQGMKTTT 416

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
            A+WN +IG Y +HG    AL+ +  M   G  PD +T +  L ACSH+GL++  ++ +S
Sbjct: 417 VATWNSLIGAYAQHGHATDALKLYERMELSGTRPDGVTLLCALFACSHLGLLDRAREFYS 476

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
            + + Y +     HF C++D+  RAG   E E  I    + P+   W  LL AC  H ++
Sbjct: 477 GMVEDYQVEAVPAHFGCLVDLFCRAGWIDEAEELIASMPVRPHISAWTALLNACKAHNDM 536

Query: 540 ELDEKDAEKLLELEPKMESNYVFPS 564
           E     A K  EL+ +  S +V  S
Sbjct: 537 ERGAWAACKAHELDSRRSSPFVVLS 561



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 139/474 (29%), Positives = 231/474 (48%), Gaps = 21/474 (4%)

Query: 95  MYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRE-SSVKPNQF 153
           MY KCG  + A  VF  IK     +W  ++      G   +A ++F  M +   ++ ++ 
Sbjct: 1   MYGKCGSVEEARAVFNSIKRSSCFSWNLMLGAYCNNGSGDQALELFKQMVDVHGIRADRV 60

Query: 154 VLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAI 213
              +   A +  G    G+  H+   + G ES  ++ +AL++MY   G      ++F+ I
Sbjct: 61  TFVTAATACSLVGSLEEGKQFHSRFVESGLESSLILDSALMNMYGRCGSAEEARKIFDRI 120

Query: 214 AHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGK 273
             ++ V WN + + +       + L ++Y M L   KP+  TF+ +L AC+  S    G+
Sbjct: 121 PVKNVVCWNVMIAAYAQNGHFSEALELYYDMNL---KPDRVTFLNVLHACTLES----GR 173

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
            +H   +   L+ +  VG +LV+M+ K G L DA   FD +A +D+ ++ A+++ Y Q G
Sbjct: 174 LIHQDVVSAGLERDKFVGNALVNMFGKCGSLSDAKRVFDRIAFRDVISWNALMSVYIQQG 233

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST 393
             + A + F++M   G++ N  T  S L  CS +  L   R +H      G   D  V  
Sbjct: 234 HRKEAFELFKRMDKAGLQPNSVTYLSLLPACSSLEQL---REIHQELADQGLEQDEQVGN 290

Query: 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP 453
            L+  Y K  S++D+ AVF+    R   SW  MI G V+HG G +AL+ +R M+ EG  P
Sbjct: 291 TLITAYNKF-SLEDSVAVFERMKRRSVVSWTCMIMGMVEHGYGGRALDLYREMVVEGVRP 349

Query: 454 DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENF 513
           D +  V  L AC+ +  + EG+K    ++    +T      A ++++ G+ GKF E E  
Sbjct: 350 DAVALVCALDACTSVENLAEGRKIHRLVEGTTMVTDVFVATA-VVNMYGKCGKFAEAEAV 408

Query: 514 ITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
               K T  A  W +L+GA + HG+      DA KL E   +ME +   P  ++
Sbjct: 409 FQGMKTTTVA-TWNSLIGAYAQHGH----ATDALKLYE---RMELSGTRPDGVT 454


>gi|255562697|ref|XP_002522354.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538432|gb|EEF40038.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 704

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 192/598 (32%), Positives = 316/598 (52%), Gaps = 4/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKV-MHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           A+++F  MP  N +S+NAL+  Y      + +   LF  M     + +  + +++L+   
Sbjct: 62  AQKLFDRMPRKNAISYNALIAAYCRDSSYETLSFKLFSDMGIQRLRPNGATFTSLLQVCC 121

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
                  G  +H   ++ G   D  +   L+ MYS CG  ++A KVF    + D V W +
Sbjct: 122 LLEDWFLGSTLHGQVLQFGYVNDICVQTMLLGMYSDCGDLESACKVFGYAVEKDDVFWNS 181

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I+   +    +E+  +F  M  S     QF  +  + A ++ G    G  IHA +    
Sbjct: 182 MISGYLKNDRIKESLSLFGEMVRSGTIFTQFTCSMALNACSKLGYYSQGRIIHAQVIVSN 241

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
              D+ + NAL+ MY   G       +F  I     +SWN++ S F   E  ++ + +F 
Sbjct: 242 ILPDSALQNALLDMYYSCGDRRTALTLFSRIQIPSLISWNSMISWFAKNEEGEKAMGLFV 301

Query: 243 QML-LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
           ++L +   KP+  TF  I+ A        +G+ LHA  IK  L  +  +G +L+ MY ++
Sbjct: 302 KLLGMSTCKPDEYTFTAIISATGEFRATDYGQPLHAQVIKAGLQWSVFIGNALLSMYFRN 361

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
             +E A   F  +  KD+  +T +I  + + G+ E A+K F KMR EG KS+ F L+  L
Sbjct: 362 SDVEAARGVFSLMEEKDVVLWTEMIMGHCRLGDGESAIKLFCKMRQEGHKSDSFALSGAL 421

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           + C+ +A L  G++LH+ AVKTG   ++ V  +LV MYAK G++  A+ +F      D  
Sbjct: 422 SVCADLAILKQGQMLHTQAVKTGCEAEISVCGSLVDMYAKNGNLQAAQLIFSQVCNPDLK 481

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
            WN MIGGY  HG+ E+A+  F  +L+ G  PD++TF+ +LSAC+H GL+E+GK  +  +
Sbjct: 482 CWNSMIGGYSHHGMAEEAVMLFAEVLECGLTPDQVTFLSLLSACNHSGLVEKGKFLWDYM 541

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNAL-VWENLLGACSWHGNIE 540
           KK  GITP  KH++CM+ +L RAG   E E  ITE+  +   L +W  LL +C    N+ 
Sbjct: 542 KK-NGITPGPKHYSCMVSLLSRAGLLDEAEELITESTCSEEHLKLWRTLLSSCVNRRNLT 600

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           +  + A+++L L+P+  + Y+  S++ A  GRW+  + +R  +    ++K+P  SWIE
Sbjct: 601 VGARAAKQVLRLDPEDSATYILLSNLYAVTGRWDGVAELRKKIRGLMLEKDPGVSWIE 658



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 120/419 (28%), Positives = 209/419 (49%), Gaps = 7/419 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A +VF    E + V WN++++GY ++   ++ + LF  M      F++F+ S  L  
Sbjct: 161 LESACKVFGYAVEKDDVFWNSMISGYLKNDRIKESLSLFGEMVRSGTIFTQFTCSMALNA 220

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +  GY   G+++HA  I      D  L  +L+DMY  CG    AL +F RI+ P +++W
Sbjct: 221 CSKLGYYSQGRIIHAQVIVSNILPDSALQNALLDMYYSCGDRRTALTLFSRIQIPSLISW 280

Query: 121 GAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            ++I+   +    ++A  +F  L+  S+ KP+++  T+++ AT E      G+ +HA + 
Sbjct: 281 NSMISWFAKNEEGEKAMGLFVKLLGMSTCKPDEYTFTAIISATGEFRATDYGQPLHAQVI 340

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALF---SRFQDYESPDQ 236
           K G +    +GNAL+SMY  N  V     VF  +  +D V W  +     R  D ES   
Sbjct: 341 KAGLQWSVFIGNALLSMYFRNSDVEAARGVFSLMEEKDVVLWTEMIMGHCRLGDGES--- 397

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            +++F +M  +G K +       L  C+ L+ +  G+ LH   +K   +    V  SLVD
Sbjct: 398 AIKLFCKMRQEGHKSDSFALSGALSVCADLAILKQGQMLHTQAVKTGCEAEISVCGSLVD 457

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           MY K+G L+ A + F  + N DL  + ++I  Y+  G AE A+  F ++   G+  ++ T
Sbjct: 458 MYAKNGNLQAAQLIFSQVCNPDLKCWNSMIGGYSHHGMAEEAVMLFAEVLECGLTPDQVT 517

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
             S L+ C+    +  G+ L     K G        + +V++ ++ G +D+AE +   S
Sbjct: 518 FLSLLSACNHSGLVEKGKFLWDYMKKNGITPGPKHYSCMVSLLSRAGLLDEAEELITES 576



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 120/494 (24%), Positives = 228/494 (46%), Gaps = 10/494 (2%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGC----ALDKFLSCSLVDMYSKCGLADNALKVF 109
           L  ++K       +K  + +HA+ +        A   +L+ +L+ MY+ CG   +A K+F
Sbjct: 7   LEALIKKCTTINSLKKARQLHALILATTASTSYAQSPYLNNNLIAMYAHCGSRSDAQKLF 66

Query: 110 YRIKDPDVVAWGAIITCLDQQGCCQEAA-KIFNLMRESSVKPNQFVLTSLVRATTETGDQ 168
            R+   + +++ A+I    +    +  + K+F+ M    ++PN    TSL++      D 
Sbjct: 67  DRMPRKNAISYNALIAAYCRDSSYETLSFKLFSDMGIQRLRPNGATFTSLLQVCCLLEDW 126

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228
             G ++H  + ++G+ +D  V   L+ MY + G +    +VF     +D V WN++ S +
Sbjct: 127 FLGSTLHGQVLQFGYVNDICVQTMLLGMYSDCGDLESACKVFGYAVEKDDVFWNSMISGY 186

Query: 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH 288
              +   + L +F +M+  G      T  + L ACS L     G+ +HA  I  ++  + 
Sbjct: 187 LKNDRIKESLSLFGEMVRSGTIFTQFTCSMALNACSKLGYYSQGRIIHAQVIVSNILPDS 246

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR-L 347
            +  +L+DMY   G    A   F  +    L ++ ++I+ +A+  E E A+  F K+  +
Sbjct: 247 ALQNALLDMYYSCGDRRTALTLFSRIQIPSLISWNSMISWFAKNEEGEKAMGLFVKLLGM 306

Query: 348 EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
              K +E+T  + ++          G+ LH+  +K G    +F+  AL++MY +   ++ 
Sbjct: 307 STCKPDEYTFTAIISATGEFRATDYGQPLHAQVIKAGLQWSVFIGNALLSMYFRNSDVEA 366

Query: 408 AEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
           A  VF     +D   W  MI G+ + G GE A++ F  M  EG+  D       LS C+ 
Sbjct: 367 ARGVFSLMEEKDVVLWTEMIMGHCRLGDGESAIKLFCKMRQEGHKSDSFALSGALSVCAD 426

Query: 468 MGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVW 526
           + ++++G+  H  ++K   G    I     ++D+  + G   +    I      P+   W
Sbjct: 427 LAILKQGQMLHTQAVKT--GCEAEISVCGSLVDMYAKNGNL-QAAQLIFSQVCNPDLKCW 483

Query: 527 ENLLGACSWHGNIE 540
            +++G  S HG  E
Sbjct: 484 NSMIGGYSHHGMAE 497



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 151/326 (46%), Gaps = 13/326 (3%)

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHA----HTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
            +C    ++K C++++ +   +QLHA     T   S   +  +  +L+ MY   G   DA
Sbjct: 3   TICCLEALIKKCTTINSLKKARQLHALILATTASTSYAQSPYLNNNLIAMYAHCGSRSDA 62

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAE-MALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
              FD +  K+  +Y A+I +Y +    E ++ K F  M ++ ++ N  T  S L  C  
Sbjct: 63  QKLFDRMPRKNAISYNALIAAYCRDSSYETLSFKLFSDMGIQRLRPNGATFTSLLQVCCL 122

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           +     G  LH   ++ G++ D+ V T L+ MY+ CG ++ A  VF  +  +D   WN M
Sbjct: 123 LEDWFLGSTLHGQVLQFGYVNDICVQTMLLGMYSDCGDLESACKVFGYAVEKDDVFWNSM 182

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           I GY+K+   +++L  F  M+  G +  + T  + L+ACS +G   +G+   + +  +  
Sbjct: 183 ISGYLKNDRIKESLSLFGEMVRSGTIFTQFTCSMALNACSKLGYYSQGRIIHAQV-IVSN 241

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDA 546
           I P       ++D+    G         +  ++ P+ + W +++   SW    E  EK  
Sbjct: 242 ILPDSALQNALLDMYYSCGDRRTALTLFSRIQI-PSLISWNSMI---SWFAKNEEGEKAM 297

Query: 547 E---KLLELEPKMESNYVFPSDISAT 569
               KLL +       Y F + ISAT
Sbjct: 298 GLFVKLLGMSTCKPDEYTFTAIISAT 323



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 117/247 (47%), Gaps = 2/247 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ VF  M E +VV W  ++ G+   GDG+  + LFC M+    K   F+LS  L  
Sbjct: 364 VEAARGVFSLMEEKDVVLWTEMIMGHCRLGDGESAIKLFCKMRQEGHKSDSFALSGALSV 423

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+   +K GQ++H  A++ GC  +  +  SLVDMY+K G    A  +F ++ +PD+  W
Sbjct: 424 CADLAILKQGQMLHTQAVKTGCEAEISVCGSLVDMYAKNGNLQAAQLIFSQVCNPDLKCW 483

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I      G  +EA  +F  + E  + P+Q    SL+ A   +G    G+ +   + K
Sbjct: 484 NSMIGGYSHHGMAEEAVMLFAEVLECGLTPDQVTFLSLLSACNHSGLVEKGKFLWDYMKK 543

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVF-EAIAHQDSVS-WNALFSRFQDYESPDQGL 238
            G        + +VS+    G +     +  E+   ++ +  W  L S   +  +   G 
Sbjct: 544 NGITPGPKHYSCMVSLLSRAGLLDEAEELITESTCSEEHLKLWRTLLSSCVNRRNLTVGA 603

Query: 239 RIFYQML 245
           R   Q+L
Sbjct: 604 RAAKQVL 610


>gi|125556039|gb|EAZ01645.1| hypothetical protein OsI_23682 [Oryza sativa Indica Group]
          Length = 615

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 173/538 (32%), Positives = 302/538 (56%), Gaps = 7/538 (1%)

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLA-DNALKVFYRIKDPDVVAWGAIITC 126
           + G  +H  A R G   D++L+ +L+  Y +      +AL+ F  +   DVVA  +I+  
Sbjct: 55  RLGCCLHGRAARAGLLADRYLANALLAFYVRLPRHLPHALRAFDDLPRRDVVAHSSILAA 114

Query: 127 LDQQGCCQEA-AKIFNLMR--ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
             + G  + A A + +++   +  V PN   L++ V+A     D+  G  +H  +   GF
Sbjct: 115 FLRAGMPRRALASLRDMLAGADDDVSPNAHALSAAVKACAVLRDRNAGACLHGSVLVRGF 174

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D +V ++LV MY          +VFE +   D + + +L S F   +  ++ +R F  
Sbjct: 175 GDDGVVLSSLVDMYGHVAAPGDARKVFEEMRAPDGICYTSLISAFVRNDWFEEAVRWFRS 234

Query: 244 MLL-KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           ML+  G +P+ CTF  ++ A  +      G+Q HA  +   L GN +V +S +DMY K G
Sbjct: 235 MLMMNGVRPDGCTFGSMMTALGNSKRGSQGRQAHAQVVTRGLCGNVIVESSTLDMYAKCG 294

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            + +A   FD +  ++  +  A++  Y Q GE E  +  FR+M  E    + ++L + L 
Sbjct: 295 LMVEARKVFDRMQVRNEVSRCALLGGYCQNGEYEKVIALFREMDKE--DGDWYSLGTVLR 352

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+ ++++  G+ +H   ++     D+ V +ALV +YAKCG++D A +VF+ S +R+T +
Sbjct: 353 ACAGLSSVKPGKEIHCRFLRMAGWRDVVVESALVDLYAKCGAVDYAYSVFEASTVRNTIT 412

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN MIGG+ ++G GE+A+  F  M+ EG  PD I+F+ VL ACSH G++E+G+ +F+S+ 
Sbjct: 413 WNAMIGGFAQNGHGERAINLFNRMVREGPRPDYISFIGVLFACSHTGMVEQGRNYFNSMC 472

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           K YGI P I+H+ CM+D+  R     E E+ I ++    ++ +W ++LGA + H N ++ 
Sbjct: 473 KDYGIAPGIEHYNCMVDLFSRVELLEEAEDLINKSPFRNDSSLWADILGASATHSNPDVA 532

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           E+ ++K++ELEP+   +Y+   ++  T GRW D   +R L+ S+ +KKEP  SW++ +
Sbjct: 533 ERVSKKMMELEPQYHLSYILLENVYRTVGRWEDALEIRRLMESRKVKKEPGMSWVDAN 590



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/454 (22%), Positives = 212/454 (46%), Gaps = 14/454 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDM------EKKFSKFSLSTV 57
           A R F  +P  +VV+ +++L  +  +G  ++ +    S++DM      +   +  +LS  
Sbjct: 93  ALRAFDDLPRRDVVAHSSILAAFLRAGMPRRAL---ASLRDMLAGADDDVSPNAHALSAA 149

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
           +K  A      AG  +H   +  G   D  +  SLVDMY       +A KVF  ++ PD 
Sbjct: 150 VKACAVLRDRNAGACLHGSVLVRGFGDDGVVLSSLVDMYGHVAAPGDARKVFEEMRAPDG 209

Query: 118 VAWGAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
           + + ++I+   +    +EA + F +++  + V+P+     S++ A   +     G   HA
Sbjct: 210 ICYTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNSKRGSQGRQAHA 269

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
            +   G   + +V ++ + MY + G +    +VF+ +  ++ VS  AL   +      ++
Sbjct: 270 QVVTRGLCGNVIVESSTLDMYAKCGLMVEARKVFDRMQVRNEVSRCALLGGYCQNGEYEK 329

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            + +F +M       +  +   +L+AC+ LS V  GK++H   ++ +   + VV ++LVD
Sbjct: 330 VIALFREM--DKEDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMAGWRDVVVESALVD 387

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           +Y K G ++ A   F++   ++   + A+I  +AQ G  E A+  F +M  EG + +  +
Sbjct: 388 LYAKCGAVDYAYSVFEASTVRNTITWNAMIGGFAQNGHGERAINLFNRMVREGPRPDYIS 447

Query: 357 LASCLNGCSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
               L  CS    +  GR   +S+    G    +     +V ++++   +++AE +   S
Sbjct: 448 FIGVLFACSHTGMVEQGRNYFNSMCKDYGIAPGIEHYNCMVDLFSRVELLEEAEDLINKS 507

Query: 416 ALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
             R D++ W  ++G    H   + A    + M++
Sbjct: 508 PFRNDSSLWADILGASATHSNPDVAERVSKKMME 541



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 56/106 (52%), Gaps = 1/106 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  VF++    N ++WNA++ G+A++G G++ ++LF  M     +    S   VL  
Sbjct: 395 VDYAYSVFEASTVRNTITWNAMIGGFAQNGHGERAINLFNRMVREGPRPDYISFIGVLFA 454

Query: 61  FANSGYIKAGQ-VVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNA 105
            +++G ++ G+   ++M    G A        +VD++S+  L + A
Sbjct: 455 CSHTGMVEQGRNYFNSMCKDYGIAPGIEHYNCMVDLFSRVELLEEA 500


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 180/599 (30%), Positives = 308/599 (51%), Gaps = 1/599 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A RVF  +     + WN L+N  A+SGD    + LF  M     +   ++ S V K F++
Sbjct: 148 ASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSS 207

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G+ +H   ++ G      +  SLV  Y K    D+A KVF  + + DV++W +I
Sbjct: 208 LRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSI 267

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I      G  ++   +F  M  S ++ +   + S+     ++     G ++H++  K  F
Sbjct: 268 INGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACF 327

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             +    N L+ MY + G +     VF  ++ +  VS+ ++ + +       + +++F +
Sbjct: 328 SREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEE 387

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +G  P++ T   +L  C+    +  GK++H    ++ L  +  V  +L+DMY K G 
Sbjct: 388 MEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGS 447

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG-IKSNEFTLASCLN 362
           +++A + F  +  KD+ ++  II  Y++   A  AL  F  +  E     +E T+A  L 
Sbjct: 448 MQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLP 507

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+ ++    GR +H   ++ G+  D  V+ +LV MYAKCG++  A  +F   A +D  S
Sbjct: 508 ACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVS 567

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           W +MI GY  HG G++A+  F  M   G   DEI+FV +L ACSH GL++EG + F+ ++
Sbjct: 568 WTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMR 627

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
               I PT++H+AC++D+L R G   +   FI    + P+A +W  LL  C  H +++L 
Sbjct: 628 HECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLA 687

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           EK AEK+ ELEP+    YV  ++I A   +W     +R  +  +G++K P CSWIE+ G
Sbjct: 688 EKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKG 746



 Score =  240 bits (613), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 140/465 (30%), Positives = 242/465 (52%), Gaps = 7/465 (1%)

Query: 15  NVVSWNALLNGYAESGDGQKVMHLFC--SMKDMEKKFSKFSLSTVLKGFANSGYIKAGQV 72
           +V   N  L  + ESG+ +  + L C     D++ +    +L +VL+  A+S  +K G+ 
Sbjct: 60  SVTDANTQLRRFCESGNLENAVKLLCVSGKWDIDPR----TLCSVLQLCADSKSLKDGKE 115

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           V       G  +D  L   L  MY+ CG    A +VF  +K    + W  ++  L + G 
Sbjct: 116 VDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGD 175

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
              +  +F  M  S V+ + +  + + ++ +       GE +H  I K GF     VGN+
Sbjct: 176 FSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNS 235

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           LV+ Y++N RV    +VF+ +  +D +SWN++ + +      ++GL +F QML+ G + +
Sbjct: 236 LVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEID 295

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
           + T + +   C+    +  G+ +H+  +K           +L+DMY K G L+ A   F 
Sbjct: 296 LATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFR 355

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
            ++++ + +YT++I  YA+ G A  A+K F +M  EGI  + +T+ + LN C+    L  
Sbjct: 356 EMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDE 415

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
           G+ +H    +     D+FVS AL+ MYAKCGS+ +AE VF    ++D  SWN +IGGY K
Sbjct: 416 GKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSK 475

Query: 433 HGLGEKALEAFRMMLDEG-YVPDEITFVVVLSACSHMGLIEEGKK 476
           +    +AL  F ++L+E  + PDE T   VL AC+ +   ++G++
Sbjct: 476 NCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGRE 520



 Score = 46.6 bits (109), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 84/176 (47%), Gaps = 17/176 (9%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           LA  +F  +   ++VSW  ++ GY   G G++ + LF  M+    +  + S  ++L   +
Sbjct: 552 LAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACS 611

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLS--CSLVDMYSKCGLADNALKVFYRIKD----PD 116
           +SG +  G     + +R  C ++  +     +VDM ++ G   + +K +  I++    PD
Sbjct: 612 HSGLVDEGWRFFNI-MRHECKIEPTVEHYACIVDMLARTG---DLIKAYRFIENMPIPPD 667

Query: 117 VVAWGAIIT-CL---DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ 168
              WGA++  C    D +   + A K+F L  E++     +VL + + A  E  +Q
Sbjct: 668 ATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENT---GYYVLMANIYAEAEKWEQ 720


>gi|218194084|gb|EEC76511.1| hypothetical protein OsI_14286 [Oryza sativa Indica Group]
          Length = 656

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 184/578 (31%), Positives = 278/578 (48%), Gaps = 52/578 (8%)

Query: 75  AMAIRLGCA--LDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           A A   GCA   D  L C  ++   K G   +AL +F R+   +VVAW ++++   + G 
Sbjct: 35  AAAADNGCAESPDVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGCTRNGR 94

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
            + A  +F  M ES V PN F   + + A  + G  R GE +H++  + GF  D  +G+ 
Sbjct: 95  PEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSC 154

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           L+ MY   G +     VF+ +   D V + +L S F      +       QML +G KPN
Sbjct: 155 LIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPN 214

Query: 253 MCTFIVILKACSSL---------------------------------------------- 266
             T   IL AC  +                                              
Sbjct: 215 EHTMTTILTACPRVLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNEGVDPNEFALSIV 274

Query: 267 ----SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAY 322
                 +G G+QLH   IKH L  +  V  +L+ MY ++G +E+     + + N DL ++
Sbjct: 275 LGACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSW 334

Query: 323 TAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVK 382
           T  I++  Q G  E A+    +M  EG   N +  +S L+ C+ VA+L  G   H +A+K
Sbjct: 335 TTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALK 394

Query: 383 TGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEA 442
            G   ++    AL+ MY+KCG +  A   F      D  SWN +I G+ +HG   KALE 
Sbjct: 395 LGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEV 454

Query: 443 FRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILG 502
           F  M   G  PD+ TF+ VL  C+H G++EEG+  F  +   Y  TP   H+ACMID+LG
Sbjct: 455 FSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLG 514

Query: 503 RAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVF 562
           R G+F E    I +    P+AL+W+ LL +C  H N+++ +  A++L+EL  +  ++YV 
Sbjct: 515 RNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVL 574

Query: 563 PSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
            S+I A  G W D   VR  +   G+KK+  CSWIE++
Sbjct: 575 MSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEIN 612



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 148/340 (43%), Gaps = 39/340 (11%)

Query: 50  SKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF 109
           ++F+LS VL      G I  G+ +H  AI+     D  +S +L+ MY + GL +    + 
Sbjct: 267 NEFALSIVLGA---CGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAML 323

Query: 110 YRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
            +I++PD+V+W   I+   Q G  ++A  +   M      PN +  +S++ +  +     
Sbjct: 324 NKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLD 383

Query: 170 CGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
            G   H +  K G +S+   GNAL++MY + G++      F+ +   D  SWN+L     
Sbjct: 384 QGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHA 443

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTI-KHSLDGNH 288
            +   ++ L +F +M   G KP+  TF+ +L  C+    V  G+      I ++S     
Sbjct: 444 QHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAP 503

Query: 289 VVGTSLVDMYDKSGCLEDA-----GVAFDS------------------------------ 313
                ++DM  ++G  ++A      + F+                               
Sbjct: 504 SHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLME 563

Query: 314 LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           L+++D  +Y  +   YA  GE E A K  R+M   G+K +
Sbjct: 564 LSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKD 603



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 16/133 (12%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A+  F  M   +V SWN+L++G+A+ GD  K + +F  M+    K    +   VL G
Sbjct: 417 MGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMG 476

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKF--------LSCSLVDMYSKCGLADNALKVFYRI 112
             +SG ++ G++   + I      D++         +C ++DM  + G  D AL++   +
Sbjct: 477 CNHSGMVEEGELFFRLMI------DQYSFTPAPSHYAC-MIDMLGRNGRFDEALRMINDM 529

Query: 113 K-DPDVVAWGAII 124
             +PD + W  ++
Sbjct: 530 PFEPDALIWKTLL 542


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 188/597 (31%), Positives = 309/597 (51%), Gaps = 26/597 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA- 62
           A RVFK MP  + VS+NA+++GY  +G+ +    LF  M + +      S + ++KG+  
Sbjct: 78  ALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMPERDL----VSWNVMIKGYVR 133

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           N    KA ++   M  R  C+ +  LS      Y++ G  D+A +VF R+ + + V+W A
Sbjct: 134 NRNLGKARELFERMPERDVCSWNTILSG-----YAQNGCVDDARRVFDRMPEKNDVSWNA 188

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +++   Q    +EA  +F      ++     +L   V+       ++  +S+        
Sbjct: 189 LLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKV------ 242

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
              D +  N +++ Y +NG +    ++F+     D  +W A+ S +      ++   +F 
Sbjct: 243 --RDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFD 300

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M  +    N  ++  +L        V   K+L       ++        +++  Y + G
Sbjct: 301 RMPER----NEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVS----TWNTMITGYAQCG 352

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            + +A   FD +  +D  ++ A+I  Y+Q+G +  AL+ F  M  EG + N  + +S L+
Sbjct: 353 KISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALS 412

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+ V  L  G+ LH   VK G+    FV  AL+ MY KCGSI++A  +FK  A +D  S
Sbjct: 413 TCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVS 472

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN MI GY +HG GE+AL  F  M  EG  PD+ T V VLSACSH GL+++G+++F ++ 
Sbjct: 473 WNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMT 532

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           + YG+ P  +H+ACM+D+LGRAG   E  N +      P+A +W  LLGA   HGN EL 
Sbjct: 533 QDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELA 592

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           E  A+K+  +EP+    YV  S++ A+ GRW D   +R  +  +G+KK P  SWIE+
Sbjct: 593 ETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEI 649



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 128/497 (25%), Positives = 218/497 (43%), Gaps = 64/497 (12%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           ELA+ +F  MPE ++VSWN ++ GY  + +  K   LF  M + +      S +T+L G+
Sbjct: 107 ELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERD----VCSWNTILSGY 162

Query: 62  ANSGYI-KAGQVVHAMAIRLGCALDKFLS-----------CSLVDMYSKCGLAD------ 103
           A +G +  A +V   M  +   + +  LS           C L        L        
Sbjct: 163 AQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLG 222

Query: 104 ---------NALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFV 154
                     A + F  +K  DVV+W  IIT   Q G   EA ++F+   ES V  + F 
Sbjct: 223 GFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFD---ESPVH-DVFT 278

Query: 155 LTSLV------------RATTETGDQRCGESIHAVICKYG-----------FE----SDT 187
            T++V            R   +   +R   S +A++  Y            F+     + 
Sbjct: 279 WTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNV 338

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK 247
              N +++ Y + G++S    +F+ +  +D VSW A+ + +       + LR+F  M  +
Sbjct: 339 STWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMERE 398

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           G + N  +F   L  C+ +  +  GKQLH   +K   +    VG +L+ MY K G +E+A
Sbjct: 399 GGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEA 458

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367
              F  +A KD+ ++  +I  Y++ G  E AL+ F  M+ EG+K ++ T+ + L+ CS  
Sbjct: 459 NDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHT 518

Query: 368 ATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DTASWNM 425
             +  GR   H++    G   +      +V +  + G +++A  + K      D A W  
Sbjct: 519 GLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGT 578

Query: 426 MIGGYVKHGLGEKALEA 442
           ++G    HG  E A  A
Sbjct: 579 LLGASRVHGNTELAETA 595



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 153/366 (41%), Gaps = 63/366 (17%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  +F S     +VSWN LL G+ +     +    F SMK  +      S +T++ G
Sbjct: 199 LEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRD----VVSWNTIITG 254

Query: 61  FAN--------------------------SGYIKAGQV---------------------- 72
           +A                           SGYI+   V                      
Sbjct: 255 YAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAML 314

Query: 73  ---VHAMAIRLGCALDKFLSC-------SLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
              V    + +   L   + C       +++  Y++CG    A  +F ++   D V+W A
Sbjct: 315 AGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAA 374

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I    Q G   EA ++F LM     + N+   +S +    +      G+ +H  + K G
Sbjct: 375 MIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGG 434

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           +E+   VGNAL+ MY + G +   + +F+ +A +D VSWN + + +  +   ++ LR F 
Sbjct: 435 YETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFE 494

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ-LHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            M  +G KP+  T + +L ACS    V  G+Q  H  T  + +  N      +VD+  ++
Sbjct: 495 SMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRA 554

Query: 302 GCLEDA 307
           G LE+A
Sbjct: 555 GLLEEA 560



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 163/387 (42%), Gaps = 41/387 (10%)

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIFNLM-RESSVKPNQFVLT-------SLVRATTET 165
           D D+  W   I+   + G C EA ++F  M R SSV  N  +          L R   + 
Sbjct: 56  DSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDE 115

Query: 166 GDQRCGESIHAVICKYGF---------------ESDTLVGNALVSMYMENGRVSYGSRVF 210
             +R   S + +I  Y                 E D    N ++S Y +NG V    RVF
Sbjct: 116 MPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVF 175

Query: 211 EAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVG 270
           + +  ++ VSWNAL S +      ++   +F      G + N   + ++   C     V 
Sbjct: 176 DRMPEKNDVSWNALLSAYVQNSKLEEACVLF------GSREN---WALVSWNCLLGGFVK 226

Query: 271 FGKQLHAHTIKHSLDGNHVVG-TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSY 329
             K + A     S+    VV   +++  Y ++G +++A   FD     D+F +TA+++ Y
Sbjct: 227 KKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGY 286

Query: 330 AQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDM 389
            Q    E A + F +M     + NE +  + L G      +   + L  +        ++
Sbjct: 287 IQNRMVEEARELFDRM----PERNEVSWNAMLAGYVQGERVEMAKELFDVMP----CRNV 338

Query: 390 FVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDE 449
                ++  YA+CG I +A+ +F     RD  SW  MI GY + G   +AL  F +M  E
Sbjct: 339 STWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMERE 398

Query: 450 GYVPDEITFVVVLSACSHMGLIEEGKK 476
           G   +  +F   LS C+ +  +E GK+
Sbjct: 399 GGRLNRSSFSSALSTCADVVALELGKQ 425



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 163/362 (45%), Gaps = 40/362 (11%)

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           +SD    N  +S YM  GR S   RVF+ +    SVS+NA+ S +      +    +F +
Sbjct: 56  DSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDE 115

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +    ++ ++ V++K      ++G  ++L     +  +        +++  Y ++GC
Sbjct: 116 MPER----DLVSWNVMIKGYVRNRNLGKARELFERMPERDV----CSWNTILSGYAQNGC 167

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS--CL 361
           ++DA   FD +  K+  ++ A++++Y Q  + E A   F      G + N + L S  CL
Sbjct: 168 VDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLF------GSREN-WALVSWNCL 220

Query: 362 NG--CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            G        +   +   S+ V+     D+     ++  YA+ G ID+A  +F  S + D
Sbjct: 221 LGGFVKKKKIVEARQFFDSMKVR-----DVVSWNTIITGYAQNGEIDEARQLFDESPVHD 275

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             +W  M+ GY+++ + E+A E F  M +     +E+++  +L+       +E       
Sbjct: 276 VFTWTAMVSGYIQNRMVEEARELFDRMPER----NEVSWNAMLAGYVQGERVEMA----- 326

Query: 480 SIKKIYGITP--TIKHFACMIDILGRAGKFTEIEN-FITETKLTPNALVWENLLGACSWH 536
             K+++ + P   +  +  MI    + GK +E +N F    K  P  + W  ++   S  
Sbjct: 327 --KELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDP--VSWAAMIAGYSQS 382

Query: 537 GN 538
           G+
Sbjct: 383 GH 384



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 9/169 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  +FK M   ++VSWN ++ GY+  G G++ +  F SMK    K    ++  VL  
Sbjct: 455 IEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSA 514

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            +++G +  G Q  H M    G   +      +VD+  + GL + A  +   +  +PD  
Sbjct: 515 CSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAA 574

Query: 119 AWGAIITCLDQQGCCQ----EAAKIFNLMRESSVKPNQFVLTSLVRATT 163
            WG ++      G  +     A KIF +  E+S     +VL S + A++
Sbjct: 575 IWGTLLGASRVHGNTELAETAADKIFAMEPENS---GMYVLLSNLYASS 620


>gi|125591533|gb|EAZ31883.1| hypothetical protein OsJ_16048 [Oryza sativa Japonica Group]
          Length = 674

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 198/609 (32%), Positives = 320/609 (52%), Gaps = 13/609 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +++ +R+F +MP+ NVVSWN L   Y ++G  Q+ + LF  M +   + +  S   +   
Sbjct: 33  VDVVRRLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELFVRMLEDGFRPTPVSFVNIFPA 92

Query: 61  FANSGYIKAGQVVHAMAIRLGCAL--DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
                     Q+ + + ++ G     D F+  S +DM+S+ G   +A +VF R    +  
Sbjct: 93  AVADDPSWPFQL-YGLLVKYGVEYINDLFVVSSAIDMFSEFGDVQSARRVFDRAAKKNTE 151

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFV-LTSLVRATTETGDQRCGESIHAV 177
            W  +IT   Q G   EA  +F+ +  S   P   V   S + A +++ D   G+ +H  
Sbjct: 152 VWNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSLGQQLHGY 211

Query: 178 ICKYGFES-DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
           + K    +   ++GNALV MY   G V     +F+ +  +D V+WN + + F   +   +
Sbjct: 212 LIKGMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPEKDIVTWNTMVTAFIQNDFDLE 271

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
           GL + Y+M   GF  +  T   +L A S+  D+  GKQ H + I+H ++G  +  + L+D
Sbjct: 272 GLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQAHGYLIRHGIEGEGL-ESYLID 330

Query: 297 MYDKSGCLEDAGVAFDSLAN--KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           MY KSG +E A   FDS  N  +D   + A+I  Y Q+G+ E A+  FR M   G++   
Sbjct: 331 MYAKSGRVEMAQRVFDSFKNAKRDEVTWNAMIAGYTQSGQPEKAILVFRAMLEAGLEPTS 390

Query: 355 FTLASCLNGCSPVAT-LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
            TLAS L  C PV   + +G+ +H  AV+     ++FV TAL+ MY+KCG I  AE VF 
Sbjct: 391 VTLASVLPACDPVGGGVYSGKQIHCFAVRRCLDTNVFVGTALIDMYSKCGEITTAENVFG 450

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
           G   + T ++  MI G  +HG G+KAL  F  M ++G  PD +TF+  +SAC++ GL++E
Sbjct: 451 GMTGKSTVTYTTMISGLGQHGFGKKALALFNSMQEKGLKPDAVTFLSAISACNYSGLVDE 510

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNAL-VWENLLGA 532
           G   + S+   +GI+ T +H  C+ D+L +AG+  E   FI       N + +W +LL +
Sbjct: 511 GLALYRSMDS-FGISATPQHHCCVADLLAKAGRVEEAYEFIEGLGEEGNFVAIWGSLLAS 569

Query: 533 CSWHGNIELDEKDAEKLLELEPKM-ESNY-VFPSDISATQGRWNDFSGVRALLSSQGIKK 590
           C   G  EL +   +KLL++E +   + Y V  S + A +  WN    +R  + ++G+KK
Sbjct: 570 CKAQGKQELAKLVTKKLLDIEKQYGHAGYSVLLSQVLAAESNWNSADSLRKEMRARGLKK 629

Query: 591 EPSCSWIEV 599
           E   SWI+V
Sbjct: 630 EAGSSWIKV 638



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 146/295 (49%), Gaps = 10/295 (3%)

Query: 191 NALVSMY-----MENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           N+L+++Y         RV    R+F+A+  ++ VSWN LF  +     P + L +F +ML
Sbjct: 16  NSLLNLYASSVRYREARVDVVRRLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELFVRML 75

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLD--GNHVVGTSLVDMYDKSGC 303
             GF+P   +F+ I  A  +  D  +  QL+   +K+ ++   +  V +S +DM+ + G 
Sbjct: 76  EDGFRPTPVSFVNIFPAAVA-DDPSWPFQLYGLLVKYGVEYINDLFVVSSAIDMFSEFGD 134

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRK-MRLEGIKSNEFTLASCLN 362
           ++ A   FD  A K+   +  +IT Y Q G+   A+  F K +    +  +  T  S L 
Sbjct: 135 VQSARRVFDRAAKKNTEVWNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLSALT 194

Query: 363 GCSPVATLANGRLLHSIAVKTGH-LLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
             S    ++ G+ LH   +K  H  L + +  ALV MY++CG++  A  +F     +D  
Sbjct: 195 AASQSQDVSLGQQLHGYLIKGMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPEKDIV 254

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
           +WN M+  ++++    + L     M   G+  D +T   VLSA S+ G ++ GK+
Sbjct: 255 TWNTMVTAFIQNDFDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQ 309


>gi|115468918|ref|NP_001058058.1| Os06g0611200 [Oryza sativa Japonica Group]
 gi|113596098|dbj|BAF19972.1| Os06g0611200 [Oryza sativa Japonica Group]
          Length = 615

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 173/538 (32%), Positives = 302/538 (56%), Gaps = 7/538 (1%)

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLA-DNALKVFYRIKDPDVVAWGAIITC 126
           + G  +H  A R G   D++L+ +L+  Y +      +AL+ F  +   DVVA  +I+  
Sbjct: 55  RLGCCLHGRAARAGLLADRYLANALLAFYVRLPRHLPHALRAFDDLPRRDVVAHSSILAA 114

Query: 127 LDQQGCCQEA-AKIFNLMR--ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
             + G  + A A + +++   +  V PN   L++ V+A     D+  G  +H  +   GF
Sbjct: 115 FLRAGMPRRALASLRDMLAGADDDVSPNAHALSAAVKACAVLRDRNAGACLHGSVLVRGF 174

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D +V ++LV MY          +VFE +   D + + +L S F   +  ++ +R F  
Sbjct: 175 GDDGVVLSSLVDMYGHVAAPGDARKVFEEMRAPDGICYTSLISAFVRNDWFEEAVRWFRS 234

Query: 244 MLL-KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           ML+  G +P+ CTF  ++ A  +      G+Q HA  +   L GN +V +S +DMY K G
Sbjct: 235 MLMMNGVRPDGCTFGSMMTALGNSKRGSQGRQAHAQVVTRGLCGNVIVESSTLDMYAKCG 294

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            + +A   FD +  ++  +  A++  Y Q GE E  +  FR+M  E    + ++L + L 
Sbjct: 295 LMVEARKVFDRMQVRNEVSRCALLGGYCQNGEYEKVIALFREMDKE--DGDWYSLGTVLR 352

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+ ++++  G+ +H   ++     D+ V +ALV +YAKCG++D A +VF+ S +R+T +
Sbjct: 353 ACAGLSSVKPGKEIHCRFLRMAGWRDVVVESALVDLYAKCGAVDYAYSVFEASTVRNTIT 412

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN MIGG+ ++G GE+A+  F  M+ EG  PD I+F+ VL ACSH G++E+G+ +F+S+ 
Sbjct: 413 WNAMIGGFAQNGHGERAINLFNRMVREGPRPDYISFIGVLFACSHTGMVEQGRNYFNSMC 472

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           K YGI P I+H+ CM+D+  R     E E+ I ++    ++ +W ++LGA + H N ++ 
Sbjct: 473 KDYGIAPGIEHYNCMVDLFSRVELLEEAEDLINKSPFRNDSSLWADILGASATHSNPDVA 532

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           E+ ++K++ELEP+   +Y+   ++  T GRW D   +R L+ S+ +KKEP  SW++ +
Sbjct: 533 ERVSKKMMELEPQYHLSYILLENVYRTVGRWEDALEIRRLMESRKVKKEPGMSWVDAN 590



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/454 (22%), Positives = 212/454 (46%), Gaps = 14/454 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDM------EKKFSKFSLSTV 57
           A R F  +P  +VV+ +++L  +  +G  ++ +    S++DM      +   +  +LS  
Sbjct: 93  ALRAFDDLPRRDVVAHSSILAAFLRAGMPRRAL---ASLRDMLAGADDDVSPNAHALSAA 149

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
           +K  A      AG  +H   +  G   D  +  SLVDMY       +A KVF  ++ PD 
Sbjct: 150 VKACAVLRDRNAGACLHGSVLVRGFGDDGVVLSSLVDMYGHVAAPGDARKVFEEMRAPDG 209

Query: 118 VAWGAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
           + + ++I+   +    +EA + F +++  + V+P+     S++ A   +     G   HA
Sbjct: 210 ICYTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNSKRGSQGRQAHA 269

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
            +   G   + +V ++ + MY + G +    +VF+ +  ++ VS  AL   +      ++
Sbjct: 270 QVVTRGLCGNVIVESSTLDMYAKCGLMVEARKVFDRMQVRNEVSRCALLGGYCQNGEYEK 329

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            + +F +M       +  +   +L+AC+ LS V  GK++H   ++ +   + VV ++LVD
Sbjct: 330 VIALFREM--DKEDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMAGWRDVVVESALVD 387

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           +Y K G ++ A   F++   ++   + A+I  +AQ G  E A+  F +M  EG + +  +
Sbjct: 388 LYAKCGAVDYAYSVFEASTVRNTITWNAMIGGFAQNGHGERAINLFNRMVREGPRPDYIS 447

Query: 357 LASCLNGCSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
               L  CS    +  GR   +S+    G    +     +V ++++   +++AE +   S
Sbjct: 448 FIGVLFACSHTGMVEQGRNYFNSMCKDYGIAPGIEHYNCMVDLFSRVELLEEAEDLINKS 507

Query: 416 ALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
             R D++ W  ++G    H   + A    + M++
Sbjct: 508 PFRNDSSLWADILGASATHSNPDVAERVSKKMME 541



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 56/106 (52%), Gaps = 1/106 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  VF++    N ++WNA++ G+A++G G++ ++LF  M     +    S   VL  
Sbjct: 395 VDYAYSVFEASTVRNTITWNAMIGGFAQNGHGERAINLFNRMVREGPRPDYISFIGVLFA 454

Query: 61  FANSGYIKAGQ-VVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNA 105
            +++G ++ G+   ++M    G A        +VD++S+  L + A
Sbjct: 455 CSHTGMVEQGRNYFNSMCKDYGIAPGIEHYNCMVDLFSRVELLEEA 500


>gi|115460348|ref|NP_001053774.1| Os04g0602600 [Oryza sativa Japonica Group]
 gi|38344148|emb|CAE01824.2| OSJNBa0041A02.15 [Oryza sativa Japonica Group]
 gi|113565345|dbj|BAF15688.1| Os04g0602600 [Oryza sativa Japonica Group]
 gi|125549608|gb|EAY95430.1| hypothetical protein OsI_17272 [Oryza sativa Indica Group]
          Length = 804

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 198/609 (32%), Positives = 320/609 (52%), Gaps = 13/609 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +++ +R+F +MP+ NVVSWN L   Y ++G  Q+ + LF  M +   + +  S   +   
Sbjct: 163 VDVVRRLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELFVRMLEDGFRPTPVSFVNIFPA 222

Query: 61  FANSGYIKAGQVVHAMAIRLGCAL--DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
                     Q+ + + ++ G     D F+  S +DM+S+ G   +A +VF R    +  
Sbjct: 223 AVADDPSWPFQL-YGLLVKYGVEYINDLFVVSSAIDMFSEFGDVQSARRVFDRAAKKNTE 281

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFV-LTSLVRATTETGDQRCGESIHAV 177
            W  +IT   Q G   EA  +F+ +  S   P   V   S + A +++ D   G+ +H  
Sbjct: 282 VWNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSLGQQLHGY 341

Query: 178 ICKYGFES-DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
           + K    +   ++GNALV MY   G V     +F+ +  +D V+WN + + F   +   +
Sbjct: 342 LIKGMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPEKDIVTWNTMVTAFIQNDFDLE 401

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
           GL + Y+M   GF  +  T   +L A S+  D+  GKQ H + I+H ++G  +  + L+D
Sbjct: 402 GLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQAHGYLIRHGIEGEGL-ESYLID 460

Query: 297 MYDKSGCLEDAGVAFDSLAN--KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           MY KSG +E A   FDS  N  +D   + A+I  Y Q+G+ E A+  FR M   G++   
Sbjct: 461 MYAKSGRVEMAQRVFDSFKNAKRDEVTWNAMIAGYTQSGQPEKAILVFRAMLEAGLEPTS 520

Query: 355 FTLASCLNGCSPVAT-LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
            TLAS L  C PV   + +G+ +H  AV+     ++FV TAL+ MY+KCG I  AE VF 
Sbjct: 521 VTLASVLPACDPVGGGVYSGKQIHCFAVRRCLDTNVFVGTALIDMYSKCGEITTAENVFG 580

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
           G   + T ++  MI G  +HG G+KAL  F  M ++G  PD +TF+  +SAC++ GL++E
Sbjct: 581 GMTGKSTVTYTTMISGLGQHGFGKKALALFNSMQEKGLKPDAVTFLSAISACNYSGLVDE 640

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNAL-VWENLLGA 532
           G   + S+   +GI+ T +H  C+ D+L +AG+  E   FI       N + +W +LL +
Sbjct: 641 GLALYRSMDS-FGISATPQHHCCVADLLAKAGRVEEAYEFIEGLGEEGNFVAIWGSLLAS 699

Query: 533 CSWHGNIELDEKDAEKLLELEPKM-ESNY-VFPSDISATQGRWNDFSGVRALLSSQGIKK 590
           C   G  EL +   +KLL++E +   + Y V  S + A +  WN    +R  + ++G+KK
Sbjct: 700 CKAQGKQELAKLVTKKLLDIEKQYGHAGYSVLLSQVLAAESNWNSADSLRKEMRARGLKK 759

Query: 591 EPSCSWIEV 599
           E   SWI+V
Sbjct: 760 EAGSSWIKV 768



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 190/402 (47%), Gaps = 17/402 (4%)

Query: 91  SLVDMYSKCGLADNALKVFYRI--KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSV 148
           S V    K G  D+A ++      + P  +   A++     +   +EA +++ L+  ++ 
Sbjct: 39  SQVKKLCKQGRLDHARRLLLEALPRPPPTLLCNALLIAYAARALPEEALRLYALLNHAAR 98

Query: 149 KP---NQFVLTSLVRATTETGDQRCGESIHAVICKYG--FESDTLVGNALVSMY-----M 198
            P   + +  ++ + A   +   R G S+HA + +         ++ N+L+++Y      
Sbjct: 99  PPVRSDHYTYSAALTACARSRRLRLGRSVHAHMLRRARSLPDTAVLRNSLLNLYASSVRY 158

Query: 199 ENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIV 258
              RV    R+F+A+  ++ VSWN LF  +     P + L +F +ML  GF+P   +F+ 
Sbjct: 159 REARVDVVRRLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELFVRMLEDGFRPTPVSFVN 218

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLD--GNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
           I  A  +  D  +  QL+   +K+ ++   +  V +S +DM+ + G ++ A   FD  A 
Sbjct: 219 IFPAAVA-DDPSWPFQLYGLLVKYGVEYINDLFVVSSAIDMFSEFGDVQSARRVFDRAAK 277

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRK-MRLEGIKSNEFTLASCLNGCSPVATLANGRL 375
           K+   +  +IT Y Q G+   A+  F K +    +  +  T  S L   S    ++ G+ 
Sbjct: 278 KNTEVWNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSLGQQ 337

Query: 376 LHSIAVKTGH-LLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
           LH   +K  H  L + +  ALV MY++CG++  A  +F     +D  +WN M+  ++++ 
Sbjct: 338 LHGYLIKGMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPEKDIVTWNTMVTAFIQND 397

Query: 435 LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
              + L     M   G+  D +T   VLSA S+ G ++ GK+
Sbjct: 398 FDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQ 439


>gi|116310930|emb|CAH67868.1| B0403H10-OSIGBa0105A11.20 [Oryza sativa Indica Group]
          Length = 804

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 198/609 (32%), Positives = 320/609 (52%), Gaps = 13/609 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +++ +R+F +MP+ NVVSWN L   Y ++G  Q+ + LF  M +   + +  S   +   
Sbjct: 163 VDVVRRLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELFVRMLEDGFRPTPVSFVNIFPA 222

Query: 61  FANSGYIKAGQVVHAMAIRLGCAL--DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
                     Q+ + + ++ G     D F+  S +DM+S+ G   +A +VF R    +  
Sbjct: 223 AVADDPSWPFQL-YGLLVKYGVEYINDLFVVSSAIDMFSEFGDVQSARRVFDRAAKKNTE 281

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFV-LTSLVRATTETGDQRCGESIHAV 177
            W  +IT   Q G   EA  +F+ +  S   P   V   S + A +++ D   G+ +H  
Sbjct: 282 VWNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSLGQQLHGY 341

Query: 178 ICKYGFES-DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
           + K    +   ++GNALV MY   G V     +F+ +  +D V+WN + + F   +   +
Sbjct: 342 LIKGMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPEKDIVTWNTMVTAFIQNDFDLE 401

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
           GL + Y+M   GF  +  T   +L A S+  D+  GKQ H + I+H ++G  +  + L+D
Sbjct: 402 GLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQAHGYLIRHGIEGEGL-ESYLID 460

Query: 297 MYDKSGCLEDAGVAFDSLAN--KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           MY KSG +E A   FDS  N  +D   + A+I  Y Q+G+ E A+  FR M   G++   
Sbjct: 461 MYAKSGRVEMAQRVFDSFKNAKRDEVTWNAMIAGYTQSGQPEKAILVFRAMLEAGLEPTS 520

Query: 355 FTLASCLNGCSPVAT-LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
            TLAS L  C PV   + +G+ +H  AV+     ++FV TAL+ MY+KCG I  AE VF 
Sbjct: 521 VTLASVLPACDPVGGGVYSGKQIHCFAVRRCLDTNVFVGTALIDMYSKCGEITTAENVFG 580

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
           G   + T ++  MI G  +HG G+KAL  F  M ++G  PD +TF+  +SAC++ GL++E
Sbjct: 581 GMTGKSTVTYTTMISGLGQHGFGKKALALFNSMQEKGLKPDAVTFLSAISACNYSGLVDE 640

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNAL-VWENLLGA 532
           G   + S+   +GI+ T +H  C+ D+L +AG+  E   FI       N + +W +LL +
Sbjct: 641 GLALYRSMDS-FGISATPQHHCCVADLLAKAGRVEEAYEFIEGLGEEGNFVAIWGSLLAS 699

Query: 533 CSWHGNIELDEKDAEKLLELEPKM-ESNY-VFPSDISATQGRWNDFSGVRALLSSQGIKK 590
           C   G  EL +   +KLL++E +   + Y V  S + A +  WN    +R  + ++G+KK
Sbjct: 700 CKAQGKQELAKLVTKKLLDIEKQYGHAGYSVLLSQVLAAESNWNSADSLRKEMRARGLKK 759

Query: 591 EPSCSWIEV 599
           E   SWI+V
Sbjct: 760 EAGSSWIKV 768



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 189/402 (47%), Gaps = 17/402 (4%)

Query: 91  SLVDMYSKCGLADNALKVFYRI--KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSV 148
           S V    K G  D+A ++      + P  +   A++     +   +EA ++  L+  ++ 
Sbjct: 39  SQVKKLCKQGRLDHARRLLLEALPRPPPTLLCNALLIAYADRALQEEALRLNALLNHAAR 98

Query: 149 KP---NQFVLTSLVRATTETGDQRCGESIHAVICKYG--FESDTLVGNALVSMY-----M 198
            P   + +  ++ + A   +   R G S+HA + +         ++ N+L+++Y      
Sbjct: 99  PPVRSDHYTYSAALTACARSRRLRLGRSVHAHMLRRARSLPDTAVLRNSLLNLYASSVRY 158

Query: 199 ENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIV 258
              RV    R+F+A+  ++ VSWN LF  +     P + L +F +ML  GF+P   +F+ 
Sbjct: 159 REARVDVVRRLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELFVRMLEDGFRPTPVSFVN 218

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLD--GNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
           I  A  +  D  +  QL+   +K+ ++   +  V +S +DM+ + G ++ A   FD  A 
Sbjct: 219 IFPAAVA-DDPSWPFQLYGLLVKYGVEYINDLFVVSSAIDMFSEFGDVQSARRVFDRAAK 277

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRK-MRLEGIKSNEFTLASCLNGCSPVATLANGRL 375
           K+   +  +IT Y Q G+   A+  F K +    +  +  T  S L   S    ++ G+ 
Sbjct: 278 KNTEVWNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSLGQQ 337

Query: 376 LHSIAVKTGH-LLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
           LH   +K  H  L + +  ALV MY++CG++  A  +F     +D  +WN M+  ++++ 
Sbjct: 338 LHGYLIKGMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPEKDIVTWNTMVTAFIQND 397

Query: 435 LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
              + L     M   G+  D +T   VLSA S+ G ++ GK+
Sbjct: 398 FDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQ 439


>gi|51091970|dbj|BAD35499.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
          Length = 665

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 173/538 (32%), Positives = 302/538 (56%), Gaps = 7/538 (1%)

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLA-DNALKVFYRIKDPDVVAWGAIITC 126
           + G  +H  A R G   D++L+ +L+  Y +      +AL+ F  +   DVVA  +I+  
Sbjct: 105 RLGCCLHGRAARAGLLADRYLANALLAFYVRLPRHLPHALRAFDDLPRRDVVAHSSILAA 164

Query: 127 LDQQGCCQEA-AKIFNLMR--ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
             + G  + A A + +++   +  V PN   L++ V+A     D+  G  +H  +   GF
Sbjct: 165 FLRAGMPRRALASLRDMLAGADDDVSPNAHALSAAVKACAVLRDRNAGACLHGSVLVRGF 224

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D +V ++LV MY          +VFE +   D + + +L S F   +  ++ +R F  
Sbjct: 225 GDDGVVLSSLVDMYGHVAAPGDARKVFEEMRAPDGICYTSLISAFVRNDWFEEAVRWFRS 284

Query: 244 MLL-KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           ML+  G +P+ CTF  ++ A  +      G+Q HA  +   L GN +V +S +DMY K G
Sbjct: 285 MLMMNGVRPDGCTFGSMMTALGNSKRGSQGRQAHAQVVTRGLCGNVIVESSTLDMYAKCG 344

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            + +A   FD +  ++  +  A++  Y Q GE E  +  FR+M  E    + ++L + L 
Sbjct: 345 LMVEARKVFDRMQVRNEVSRCALLGGYCQNGEYEKVIALFREMDKE--DGDWYSLGTVLR 402

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+ ++++  G+ +H   ++     D+ V +ALV +YAKCG++D A +VF+ S +R+T +
Sbjct: 403 ACAGLSSVKPGKEIHCRFLRMAGWRDVVVESALVDLYAKCGAVDYAYSVFEASTVRNTIT 462

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN MIGG+ ++G GE+A+  F  M+ EG  PD I+F+ VL ACSH G++E+G+ +F+S+ 
Sbjct: 463 WNAMIGGFAQNGHGERAINLFNRMVREGPRPDYISFIGVLFACSHTGMVEQGRNYFNSMC 522

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           K YGI P I+H+ CM+D+  R     E E+ I ++    ++ +W ++LGA + H N ++ 
Sbjct: 523 KDYGIAPGIEHYNCMVDLFSRVELLEEAEDLINKSPFRNDSSLWADILGASATHSNPDVA 582

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           E+ ++K++ELEP+   +Y+   ++  T GRW D   +R L+ S+ +KKEP  SW++ +
Sbjct: 583 ERVSKKMMELEPQYHLSYILLENVYRTVGRWEDALEIRRLMESRKVKKEPGMSWVDAN 640



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/454 (22%), Positives = 212/454 (46%), Gaps = 14/454 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDM------EKKFSKFSLSTV 57
           A R F  +P  +VV+ +++L  +  +G  ++ +    S++DM      +   +  +LS  
Sbjct: 143 ALRAFDDLPRRDVVAHSSILAAFLRAGMPRRAL---ASLRDMLAGADDDVSPNAHALSAA 199

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
           +K  A      AG  +H   +  G   D  +  SLVDMY       +A KVF  ++ PD 
Sbjct: 200 VKACAVLRDRNAGACLHGSVLVRGFGDDGVVLSSLVDMYGHVAAPGDARKVFEEMRAPDG 259

Query: 118 VAWGAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
           + + ++I+   +    +EA + F +++  + V+P+     S++ A   +     G   HA
Sbjct: 260 ICYTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNSKRGSQGRQAHA 319

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
            +   G   + +V ++ + MY + G +    +VF+ +  ++ VS  AL   +      ++
Sbjct: 320 QVVTRGLCGNVIVESSTLDMYAKCGLMVEARKVFDRMQVRNEVSRCALLGGYCQNGEYEK 379

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            + +F +M       +  +   +L+AC+ LS V  GK++H   ++ +   + VV ++LVD
Sbjct: 380 VIALFREM--DKEDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMAGWRDVVVESALVD 437

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           +Y K G ++ A   F++   ++   + A+I  +AQ G  E A+  F +M  EG + +  +
Sbjct: 438 LYAKCGAVDYAYSVFEASTVRNTITWNAMIGGFAQNGHGERAINLFNRMVREGPRPDYIS 497

Query: 357 LASCLNGCSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
               L  CS    +  GR   +S+    G    +     +V ++++   +++AE +   S
Sbjct: 498 FIGVLFACSHTGMVEQGRNYFNSMCKDYGIAPGIEHYNCMVDLFSRVELLEEAEDLINKS 557

Query: 416 ALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
             R D++ W  ++G    H   + A    + M++
Sbjct: 558 PFRNDSSLWADILGASATHSNPDVAERVSKKMME 591



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 56/106 (52%), Gaps = 1/106 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  VF++    N ++WNA++ G+A++G G++ ++LF  M     +    S   VL  
Sbjct: 445 VDYAYSVFEASTVRNTITWNAMIGGFAQNGHGERAINLFNRMVREGPRPDYISFIGVLFA 504

Query: 61  FANSGYIKAGQ-VVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNA 105
            +++G ++ G+   ++M    G A        +VD++S+  L + A
Sbjct: 505 CSHTGMVEQGRNYFNSMCKDYGIAPGIEHYNCMVDLFSRVELLEEA 550


>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 749

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 180/541 (33%), Positives = 284/541 (52%), Gaps = 11/541 (2%)

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
            +++H   ++ G   D F+   LV++YSKCG+ ++A KVF  +   +V AW  ++T   Q
Sbjct: 77  ARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQ 136

Query: 130 QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
                 A ++F  M E+   P+ + L  ++ A +       G+ +HA + KY  + DT +
Sbjct: 137 NSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDTSI 196

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
           GN+L S Y +  R+ +  + F+ I  +D +SW ++ S   D     + L  F  ML  G 
Sbjct: 197 GNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGM 256

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
           KPN  T   +L AC  +  +  G Q+H+ +IK     + ++  S++ +Y K G L +A  
Sbjct: 257 KPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQK 316

Query: 310 AFDSLANKDLFAYTAIITSYAQAGE-----------AEMALKCFRKMRLEGIKSNEFTLA 358
            F+ +   +L  + A+I  +A+  +              AL  F+K+   G+K + FT +
Sbjct: 317 LFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFS 376

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L+ CS +  L  G  +H   +K+G L D+ V TALV+MY KCGSID A   F     R
Sbjct: 377 SVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSR 436

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
              SW  MI G+ +HGL ++AL+ F  M   G  P+++TFV VLSACSH GL +E   +F
Sbjct: 437 TMISWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALYYF 496

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
             ++K Y I P + HFAC+ID+  R G+  E  + + +    PN  +W  L+  C  HG 
Sbjct: 497 ELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGK 556

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
            +L    AE+LL+L+PK    YV   ++  + GRW D S VR L+  + + K    SWI 
Sbjct: 557 SDLGFYAAEQLLKLKPKDVETYVSLLNMHISAGRWKDVSKVRKLMKEEKVGKLKDWSWIS 616

Query: 599 V 599
           +
Sbjct: 617 I 617



 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 138/463 (29%), Positives = 239/463 (51%), Gaps = 19/463 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A +VF ++P  NV +W  LL GY ++      + LF  M +     S ++L  VL  
Sbjct: 109 MESAHKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNA 168

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ++   I+ G+ VHA  I+     D  +  SL   YSK    + A+K F  IK+ DV++W
Sbjct: 169 CSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISW 228

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I+     G    +   F  M    +KPN++ LTS++ A         G  IH++  K
Sbjct: 229 TSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIK 288

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALF---SRFQD------- 230
            G+ S  L+ N+++ +Y++ G +    ++FE +   + V+WNA+    ++  D       
Sbjct: 289 LGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVA 348

Query: 231 -YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
            ++S    L +F ++   G KP++ TF  +L  CS+L  +  G+Q+H   IK  +  + V
Sbjct: 349 AHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVV 408

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           VGT+LV MY+K G ++ A  AF  + ++ + ++T++IT +A+ G ++ AL+ F  MRL G
Sbjct: 409 VGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVG 468

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH----LLDMFVSTALVAMYAKCGSI 405
           IK N+ T    L+ CS  A LA+  L +   ++  +    ++D F    L+ MY + G +
Sbjct: 469 IKPNQVTFVGVLSACSH-AGLADEALYYFELMQKQYNIKPVMDHF--ACLIDMYLRLGRV 525

Query: 406 DDA-EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML 447
           ++A + V K +   +   W+M+I G   HG  +    A   +L
Sbjct: 526 EEAFDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLL 568



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 146/320 (45%), Gaps = 15/320 (4%)

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
           D E P  G RI               +  +L+ C   +     + +H H +K     +  
Sbjct: 46  DAEEPKLGTRI-----------ESSYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLF 94

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           V T LV++Y K G +E A   FD+L  +++ A+T ++T Y Q     +AL+ F KM   G
Sbjct: 95  VMTFLVNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAG 154

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
              + +TL   LN CS + ++  G+ +H+  +K     D  +  +L + Y+K   ++ A 
Sbjct: 155 AYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAI 214

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
             FK    +D  SW  +I     +G   ++L  F  ML +G  P+E T   VLSAC  M 
Sbjct: 215 KAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVML 274

Query: 470 LIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWEN 528
            ++ G + H  SIK  YG +  IK+   ++ +  + G   E +    E   T N + W  
Sbjct: 275 TLDLGAQIHSLSIKLGYGSSILIKN--SIMYLYLKCGWLIEAQKLF-EGMETLNLVTWNA 331

Query: 529 LLGACSWHGNIELDEKDAEK 548
           ++   +   ++  D+  A K
Sbjct: 332 MIAGHAKMMDLAEDDVAAHK 351


>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 755

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 180/541 (33%), Positives = 284/541 (52%), Gaps = 11/541 (2%)

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
            +++H   ++ G   D F+   LV++YSKCG+ ++A KVF  +   +V AW  ++T   Q
Sbjct: 83  ARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQ 142

Query: 130 QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
                 A ++F  M E+   P+ + L  ++ A +       G+ +HA + KY  + DT +
Sbjct: 143 NSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDTSI 202

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
           GN+L S Y +  R+ +  + F+ I  +D +SW ++ S   D     + L  F  ML  G 
Sbjct: 203 GNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGM 262

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
           KPN  T   +L AC  +  +  G Q+H+ +IK     + ++  S++ +Y K G L +A  
Sbjct: 263 KPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQK 322

Query: 310 AFDSLANKDLFAYTAIITSYAQAGE-----------AEMALKCFRKMRLEGIKSNEFTLA 358
            F+ +   +L  + A+I  +A+  +              AL  F+K+   G+K + FT +
Sbjct: 323 LFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFS 382

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L+ CS +  L  G  +H   +K+G L D+ V TALV+MY KCGSID A   F     R
Sbjct: 383 SVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSR 442

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
              SW  MI G+ +HGL ++AL+ F  M   G  P+++TFV VLSACSH GL +E   +F
Sbjct: 443 TMISWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALYYF 502

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
             ++K Y I P + HFAC+ID+  R G+  E  + + +    PN  +W  L+  C  HG 
Sbjct: 503 ELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGK 562

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
            +L    AE+LL+L+PK    YV   ++  + GRW D S VR L+  + + K    SWI 
Sbjct: 563 SDLGFYAAEQLLKLKPKDVETYVSLLNMHISAGRWKDVSKVRKLMKEEKVGKLKDWSWIS 622

Query: 599 V 599
           +
Sbjct: 623 I 623



 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 138/463 (29%), Positives = 239/463 (51%), Gaps = 19/463 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A +VF ++P  NV +W  LL GY ++      + LF  M +     S ++L  VL  
Sbjct: 115 MESAHKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNA 174

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ++   I+ G+ VHA  I+     D  +  SL   YSK    + A+K F  IK+ DV++W
Sbjct: 175 CSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISW 234

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I+     G    +   F  M    +KPN++ LTS++ A         G  IH++  K
Sbjct: 235 TSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIK 294

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALF---SRFQD------- 230
            G+ S  L+ N+++ +Y++ G +    ++FE +   + V+WNA+    ++  D       
Sbjct: 295 LGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVA 354

Query: 231 -YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
            ++S    L +F ++   G KP++ TF  +L  CS+L  +  G+Q+H   IK  +  + V
Sbjct: 355 AHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVV 414

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           VGT+LV MY+K G ++ A  AF  + ++ + ++T++IT +A+ G ++ AL+ F  MRL G
Sbjct: 415 VGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVG 474

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH----LLDMFVSTALVAMYAKCGSI 405
           IK N+ T    L+ CS  A LA+  L +   ++  +    ++D F    L+ MY + G +
Sbjct: 475 IKPNQVTFVGVLSACSH-AGLADEALYYFELMQKQYNIKPVMDHF--ACLIDMYLRLGRV 531

Query: 406 DDA-EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML 447
           ++A + V K +   +   W+M+I G   HG  +    A   +L
Sbjct: 532 EEAFDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLL 574



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 146/320 (45%), Gaps = 15/320 (4%)

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
           D E P  G RI               +  +L+ C   +     + +H H +K     +  
Sbjct: 52  DAEEPKLGTRI-----------ESSYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLF 100

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           V T LV++Y K G +E A   FD+L  +++ A+T ++T Y Q     +AL+ F KM   G
Sbjct: 101 VMTFLVNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAG 160

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
              + +TL   LN CS + ++  G+ +H+  +K     D  +  +L + Y+K   ++ A 
Sbjct: 161 AYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAI 220

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
             FK    +D  SW  +I     +G   ++L  F  ML +G  P+E T   VLSAC  M 
Sbjct: 221 KAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVML 280

Query: 470 LIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWEN 528
            ++ G + H  SIK  YG +  IK+   ++ +  + G   E +    E   T N + W  
Sbjct: 281 TLDLGAQIHSLSIKLGYGSSILIKN--SIMYLYLKCGWLIEAQKLF-EGMETLNLVTWNA 337

Query: 529 LLGACSWHGNIELDEKDAEK 548
           ++   +   ++  D+  A K
Sbjct: 338 MIAGHAKMMDLAEDDVAAHK 357


>gi|317106770|dbj|BAJ53262.1| JMS10C05.5 [Jatropha curcas]
          Length = 638

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 180/589 (30%), Positives = 313/589 (53%), Gaps = 4/589 (0%)

Query: 15  NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVH 74
           N ++W +L+ GY +  + +  +++   M    +  ++ + S +L+  ++  Y   GQ  H
Sbjct: 5   NTITWTSLIKGYLDDNEFESALNIASEMHKSGEALNEHTCSVILQACSSPDYRIFGQQFH 64

Query: 75  AMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQ 134
              I+ G   +  +  SL+ MY++  L  +A KVF  +   DV  +  +I    + G  +
Sbjct: 65  CFVIKCGFDENVVVGTSLIAMYTRSKLFGDAEKVFDSMACKDVRCFNFMILEYARAGNGE 124

Query: 135 EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALV 194
           +A ++F  M  + ++PN +  T+++ A         GE    +  KYGF ++T +GNA++
Sbjct: 125 KAIRVFINMLNAGLQPNDYTFTNIISACDGDLGIEEGEQFLGLSFKYGFLNETSIGNAII 184

Query: 195 SMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMC 254
           +MY + G      R+F A+  ++ +SW AL S +       + +  F ++ L G   +  
Sbjct: 185 NMYGKKGMAREAERMFSAMTDRNLISWTALISGYTRSGDGKKAVDTFMELHLCGVNFDSS 244

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
               IL  CS   ++  G Q+H   IK        +GT+LVD+Y K G L  A + FD L
Sbjct: 245 LLTTILDGCSECRNLELGLQIHGLVIKLGYACAVNIGTALVDLYAKCGNLMSARMVFDGL 304

Query: 315 ANKDLFAYTAIITSY---AQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLA 371
           ++K + ++ AI+  +   ++ GE E  +  F   RL+GIK +  T +  L+  +  +TL 
Sbjct: 305 SSKRIASFNAILAGFMENSRDGE-EDPIVLFNHFRLDGIKPDMVTFSRLLSLSANHSTLG 363

Query: 372 NGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV 431
            GR  H+ A+KTG   D+ V+ A++ MYAKCGSI++A  +F      D+ SWN MI  Y 
Sbjct: 364 RGRCYHAYAIKTGFEADLSVANAVITMYAKCGSIEEAHRMFNVMNDHDSISWNAMISAYA 423

Query: 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI 491
            HG G K L  F  M+ + + PDEIT + +L AC++ GL  +G   F+ ++  YGI P +
Sbjct: 424 LHGQGAKVLLLFEEMIKKEFAPDEITILSILQACTYSGLFRDGISLFNVMEPKYGIKPLL 483

Query: 492 KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551
           +H+ACM+D+LGRAG  +E  + I ++  + + L+W  L+  C   G+    +  ++ LLE
Sbjct: 484 EHYACMVDLLGRAGHLSEAMDIINKSPFSKSTLLWRTLVNVCKLCGDRNFGKLASKYLLE 543

Query: 552 LEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           L P    +Y+  S++ A +   ++ + VR +++   + KE   SWIE+D
Sbjct: 544 LSPVEAGSYILVSNMYAGERMLDEAAKVRTVMNDLKLSKEAGTSWIEID 592



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 102/430 (23%), Positives = 215/430 (50%), Gaps = 8/430 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF SM   +V  +N ++  YA +G+G+K + +F +M +   + + ++ + ++     
Sbjct: 95  AEKVFDSMACKDVRCFNFMILEYARAGNGEKAIRVFINMLNAGLQPNDYTFTNIISACDG 154

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              I+ G+    ++ + G   +  +  ++++MY K G+A  A ++F  + D ++++W A+
Sbjct: 155 DLGIEEGEQFLGLSFKYGFLNETSIGNAIINMYGKKGMAREAERMFSAMTDRNLISWTAL 214

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   + G  ++A   F  +    V  +  +LT+++   +E  +   G  IH ++ K G+
Sbjct: 215 ISGYTRSGDGKKAVDTFMELHLCGVNFDSSLLTTILDGCSECRNLELGLQIHGLVIKLGY 274

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD--YESPDQGLRIF 241
                +G ALV +Y + G +     VF+ ++ +   S+NA+ + F +   +  +  + +F
Sbjct: 275 ACAVNIGTALVDLYAKCGNLMSARMVFDGLSSKRIASFNAILAGFMENSRDGEEDPIVLF 334

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
               L G KP+M TF  +L   ++ S +G G+  HA+ IK   + +  V  +++ MY K 
Sbjct: 335 NHFRLDGIKPDMVTFSRLLSLSANHSTLGRGRCYHAYAIKTGFEADLSVANAVITMYAKC 394

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G +E+A   F+ + + D  ++ A+I++YA  G+    L  F +M  +    +E T+ S L
Sbjct: 395 GSIEEAHRMFNVMNDHDSISWNAMISAYALHGQGAKVLLLFEEMIKKEFAPDEITILSIL 454

Query: 362 NGCSPVATLANG-RLLHSIAVKTG--HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL- 417
             C+      +G  L + +  K G   LL+ +    +V +  + G + +A  +   S   
Sbjct: 455 QACTYSGLFRDGISLFNVMEPKYGIKPLLEHY--ACMVDLLGRAGHLSEAMDIINKSPFS 512

Query: 418 RDTASWNMMI 427
           + T  W  ++
Sbjct: 513 KSTLLWRTLV 522



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/285 (31%), Positives = 141/285 (49%), Gaps = 8/285 (2%)

Query: 216 QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL 275
           +++++W +L   + D    +  L I  +M   G   N  T  VIL+ACSS     FG+Q 
Sbjct: 4   RNTITWTSLIKGYLDDNEFESALNIASEMHKSGEALNEHTCSVILQACSSPDYRIFGQQF 63

Query: 276 HAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEA 335
           H   IK   D N VVGTSL+ MY +S    DA   FDS+A KD+  +  +I  YA+AG  
Sbjct: 64  HCFVIKCGFDENVVVGTSLIAMYTRSKLFGDAEKVFDSMACKDVRCFNFMILEYARAGNG 123

Query: 336 EMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTAL 395
           E A++ F  M   G++ N++T  + ++ C     +  G     ++ K G L +  +  A+
Sbjct: 124 EKAIRVFINMLNAGLQPNDYTFTNIISACDGDLGIEEGEQFLGLSFKYGFLNETSIGNAI 183

Query: 396 VAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE 455
           + MY K G   +AE +F     R+  SW  +I GY + G G+KA++ F  +   G   D 
Sbjct: 184 INMYGKKGMAREAERMFSAMTDRNLISWTALISGYTRSGDGKKAVDTFMELHLCGVNFDS 243

Query: 456 ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDI 500
                +L  CS    +E G        +I+G+   +  +AC ++I
Sbjct: 244 SLLTTILDGCSECRNLELG-------LQIHGLVIKLG-YACAVNI 280



 Score = 45.8 bits (107), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 3/110 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A R+F  M + + +SWNA+++ YA  G G KV+ LF  M   E    + ++ ++L+ 
Sbjct: 397 IEEAHRMFNVMNDHDSISWNAMISAYALHGQGAKVLLLFEEMIKKEFAPDEITILSILQA 456

Query: 61  FANSGYIKAG-QVVHAMAIRLGC-ALDKFLSCSLVDMYSKCGLADNALKV 108
              SG  + G  + + M  + G   L +  +C +VD+  + G    A+ +
Sbjct: 457 CTYSGLFRDGISLFNVMEPKYGIKPLLEHYAC-MVDLLGRAGHLSEAMDI 505


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 180/601 (29%), Positives = 311/601 (51%), Gaps = 1/601 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +++  ++F  + + + V WN +LNGYA+ G    V+  F  M+  +   +  +   VL  
Sbjct: 189 IDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSV 248

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+   I  G  +H + +  G   +  +  SL+ MYSKCG  D+A K+F  +   D V W
Sbjct: 249 CASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTW 308

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+   Q G  +E+   F  M  S V P+    +SL+ + ++  +    + IH  I +
Sbjct: 309 NCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMR 368

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +    D  + +AL+  Y +   VS    +F      D V + A+ S +         L +
Sbjct: 369 HSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEM 428

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  ++     PN  T + IL     L  +  G++LH   IK   D    +G +++DMY K
Sbjct: 429 FRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAK 488

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +  A   F+ L+ +D+ ++ ++IT  AQ+     A+  FR+M + GI  +  ++++ 
Sbjct: 489 CGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAA 548

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L+ C+ + + + G+ +H   +K     D++  + L+ MYAKCG++  A  VFK    ++ 
Sbjct: 549 LSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNI 608

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDE-GYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
            SWN +I     HG  + +L  F  M+++ G  PD+ITF+ ++S+C H+G ++EG + F 
Sbjct: 609 VSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFR 668

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           S+ + YGI P  +H+AC++D+ GRAG+ TE    +      P+A VW  LLGAC  H N+
Sbjct: 669 SMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNV 728

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           EL E  + KL++L+P     YV  S+  A    W   + VR+L+  + ++K P  SWIE+
Sbjct: 729 ELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSWIEI 788

Query: 600 D 600
           +
Sbjct: 789 N 789



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 126/509 (24%), Positives = 235/509 (46%), Gaps = 7/509 (1%)

Query: 33  QKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSL 92
           +K + L  S + +E+   +  LS +L+  +N   ++ G+ VHA  I    + D +    +
Sbjct: 18  KKSLPLRNSSRFLEETIPR-RLSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERI 76

Query: 93  VDMYSKCGLADNALKVFYRI--KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKP 150
           + MY+ CG   +  K+FYR+  +   +  W +II+   + G   +A   +  M    V P
Sbjct: 77  LGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSP 136

Query: 151 NQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF 210
           +      LV+A     + +  + +   +   G + +  V ++L+  Y+E G++   S++F
Sbjct: 137 DVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLF 196

Query: 211 EAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVG 270
           + +  +D V WN + + +    + D  ++ F  M +    PN  TF  +L  C+S   + 
Sbjct: 197 DRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLID 256

Query: 271 FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
            G QLH   +   +D    +  SL+ MY K G  +DA   F  ++  D   +  +I+ Y 
Sbjct: 257 LGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYV 316

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
           Q+G  E +L  F +M   G+  +  T +S L   S    L   + +H   ++    LD+F
Sbjct: 317 QSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIF 376

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
           +++AL+  Y KC  +  A+ +F      D   +  MI GY+ +GL   +LE FR ++   
Sbjct: 377 LTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVK 436

Query: 451 YVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTE 509
             P+EIT V +L     +  ++ G++ H   IKK  G          +ID+  + G+   
Sbjct: 437 ISPNEITLVSILPVIGILLALKLGRELHGFIIKK--GFDNRCNIGCAVIDMYAKCGRMN- 493

Query: 510 IENFITETKLTPNALVWENLLGACSWHGN 538
           +   I E     + + W +++  C+   N
Sbjct: 494 LAYEIFERLSKRDIVSWNSMITRCAQSDN 522


>gi|242055533|ref|XP_002456912.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
 gi|241928887|gb|EES02032.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
          Length = 648

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 181/537 (33%), Positives = 284/537 (52%), Gaps = 8/537 (1%)

Query: 68  KAGQVVHAMAIRL-GCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           + G+  HA A+RL   AL  F+   LV++YSK  L   A         P VV++ A I+ 
Sbjct: 30  RLGRAAHARALRLLAPALPPFICAHLVNLYSKLDLPGAAAAALAADPSPTVVSYTAFISG 89

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC----GESIHAVICKYG 182
             Q     +A   F  M    ++PN F   S  +A   +   RC    G  +HA+  ++G
Sbjct: 90  AAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAA-SAPPRCAAAVGPQVHALALRFG 148

Query: 183 F-ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           +   D  V  A + MY + GR++   R+F+ + +++ V+WNA+ +       P + +  +
Sbjct: 149 YLPDDAFVSCAALDMYFKTGRLALARRLFDEMPNRNVVAWNAVMTNAVLDGRPIETVEAY 208

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
           + +   G  PN+ +      AC+ ++ +  G+Q H    K   D +  V  S+VD Y K 
Sbjct: 209 FGLRGAGGMPNVVSVCAFFNACAGMTCLSLGEQFHGFVAKCGFDKDVSVSNSMVDFYGKC 268

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
            C+  A + FD +  ++  ++ +++ +YAQ G  E A   +   R  G +  +F ++S L
Sbjct: 269 RCMGKARLVFDGMGVRNSVSWCSMVVAYAQNGAEEEAFLVYLGARRAGEEPTDFMVSSLL 328

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
             C+ +  L  GR LH++A ++    ++FV++ALV MY KCG I DAE VF     R+  
Sbjct: 329 TTCAGLLGLDLGRALHAVAARSCIDANIFVASALVDMYGKCGGIQDAEQVFFEMPQRNLV 388

Query: 422 SWNMMIGGYVKHGLGEKALEAF-RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
           +WN MIGGY   G    AL  F  M++     P+ IT V VL+ACS  GL +EG + F +
Sbjct: 389 TWNAMIGGYAHIGDAWNALAVFDEMIMGRETAPNYITIVNVLTACSRGGLTKEGYELFQT 448

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +K+ +GI P I+H+AC++D+LGRAG   +    I    + P+  VW  LLG C  HG  E
Sbjct: 449 MKQRFGIEPRIEHYACVVDLLGRAGMEEQAYEIIQGMPMRPSISVWGALLGGCKMHGKTE 508

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           L    AEKL EL+P+   N+V  S++ A+ GRW + + VR  + + GIKK+P  SWI
Sbjct: 509 LGRVAAEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKKDPGRSWI 565



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 123/265 (46%), Gaps = 1/265 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + LA+R+F  MP  NVV+WNA++      G   + +  +  ++      +  S+      
Sbjct: 170 LALARRLFDEMPNRNVVAWNAVMTNAVLDGRPIETVEAYFGLRGAGGMPNVVSVCAFFNA 229

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    +  G+  H    + G   D  +S S+VD Y KC     A  VF  +   + V+W
Sbjct: 230 CAGMTCLSLGEQFHGFVAKCGFDKDVSVSNSMVDFYGKCRCMGKARLVFDGMGVRNSVSW 289

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +++    Q G  +EA  ++   R +  +P  F+++SL+           G ++HAV  +
Sbjct: 290 CSMVVAYAQNGAEEEAFLVYLGARRAGEEPTDFMVSSLLTTCAGLLGLDLGRALHAVAAR 349

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              +++  V +ALV MY + G +    +VF  +  ++ V+WNA+   +         L +
Sbjct: 350 SCIDANIFVASALVDMYGKCGGIQDAEQVFFEMPQRNLVTWNAMIGGYAHIGDAWNALAV 409

Query: 241 FYQMLL-KGFKPNMCTFIVILKACS 264
           F +M++ +   PN  T + +L ACS
Sbjct: 410 FDEMIMGRETAPNYITIVNVLTACS 434


>gi|225433310|ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Vitis vinifera]
          Length = 625

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 182/547 (33%), Positives = 304/547 (55%), Gaps = 14/547 (2%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +K  +  H+  + LG + +  L+  L+  Y+ C    ++  VF  ++  +V  W ++I  
Sbjct: 39  LKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLING 98

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             +     EA ++FN M  S V P+ F L++L + ++E G    G+SIH    + GF SD
Sbjct: 99  YAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSD 158

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ---DYESPDQGLRIFYQ 243
           T+V N+++SMY + G      +VF+ +  ++S SWN L + +    +    ++      Q
Sbjct: 159 TVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQ 218

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVG---FGKQLHAHTIKHSL----DGNHVVGTSLVD 296
           M +   +P+  T   +L  C    D G   +G++LH + +K+ L    D +  +G  L+D
Sbjct: 219 MQMDEVRPDAYTISSLLPLCDG--DKGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLID 276

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR-LEGIKSNEF 355
           MY +S  +      FD +  +++F++TA+I  Y + G+++ AL  FR M+ ++GI+ N  
Sbjct: 277 MYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRV 336

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
           +L S L  CS  + L +GR +H  AV+     ++ +  AL+ MY+KCGS+D A  VF+  
Sbjct: 337 SLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDD 396

Query: 416 AL-RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
           +L +D  SW+ MI GY  HG G++A+  +  ML  G  PD IT V +LSACS  GL+ EG
Sbjct: 397 SLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEG 456

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
              +SS+   YGI PT++ FAC++D+LGRAG+     +FI    + P   VW  L+    
Sbjct: 457 LNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKAMPVEPGPSVWGALVSCSI 516

Query: 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSC 594
            HG++E+ E     L++LEP+  SNYV  S++ A+  RW+  + VR ++  + ++K P C
Sbjct: 517 IHGDLEMQELAYRFLIQLEPENPSNYVSISNLYASSRRWDAVAEVRRMMKDKRLRKVPGC 576

Query: 595 SWIEVDG 601
           SWI ++ 
Sbjct: 577 SWISINN 583



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 126/459 (27%), Positives = 226/459 (49%), Gaps = 18/459 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           ++ VF S+   NV  WN+L+NGYA++    +   LF  M   +     F+LST+ K  + 
Sbjct: 77  SRLVFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSE 136

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G + +G+ +H  +IR+G   D  ++ S++ MY KCG  + + KVF  +   +  +W  +
Sbjct: 137 LGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVL 196

Query: 124 ITCLDQQGCC---QEAAKIFNLMRESSVKPNQFVLTSLVR-ATTETGDQRCGESIHAVIC 179
           I      G C   +E  +    M+   V+P+ + ++SL+     + G    G  +H  I 
Sbjct: 197 IAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDKGKWDYGRELHCYIV 256

Query: 180 K----YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD 235
           K     G +SD  +G  L+ MY  + +V  G RVF+ +  ++  SW A+ + + +    D
Sbjct: 257 KNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSD 316

Query: 236 QGLRIFYQM-LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
           + L +F  M ++ G +PN  + + +L ACSS S +  G+Q+H   ++  L+    +  +L
Sbjct: 317 EALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNAL 376

Query: 295 VDMYDKSGCLEDAGVAF--DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           +DMY K G L+ A   F  DSL  KD  +++++I+ Y   G+ + A+  + KM   GI+ 
Sbjct: 377 IDMYSKCGSLDSARRVFEDDSLC-KDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRP 435

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL---LDMFVSTALVAMYAKCGSIDDAE 409
           +  T    L+ CS    +  G  ++S  +    +   L++F    +V M  + G +D A 
Sbjct: 436 DMITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIF--ACIVDMLGRAGQLDPAL 493

Query: 410 AVFKGSALRDTAS-WNMMIGGYVKHGLGEKALEAFRMML 447
              K   +    S W  ++   + HG  E    A+R ++
Sbjct: 494 DFIKAMPVEPGPSVWGALVSCSIIHGDLEMQELAYRFLI 532



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 156/317 (49%), Gaps = 11/317 (3%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGD---GQKVMHLFCSMKDMEKKFSKFSLSTVL 58
           E +++VF  M   N  SWN L+ GYA SG+    ++       M+  E +   +++S++L
Sbjct: 176 EESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLL 235

Query: 59  K-GFANSGYIKAGQVVHAMAIR----LGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
                + G    G+ +H   ++    LG   D  L C L+DMYS+        +VF R+K
Sbjct: 236 PLCDGDKGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMK 295

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRE-SSVKPNQFVLTSLVRATTETGDQRCGE 172
             +V +W A+I    + G   EA  +F  M+    ++PN+  L S++ A +       G 
Sbjct: 296 CRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGR 355

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH-QDSVSWNALFSRFQDY 231
            IH    +    ++  + NAL+ MY + G +    RVFE  +  +D++SW+++ S +  +
Sbjct: 356 QIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLH 415

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK-HSLDGNHVV 290
               + + ++ +ML  G +P+M T + IL ACS    V  G  +++  I  + ++    +
Sbjct: 416 GKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEI 475

Query: 291 GTSLVDMYDKSGCLEDA 307
              +VDM  ++G L+ A
Sbjct: 476 FACIVDMLGRAGQLDPA 492



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 121/231 (52%), Gaps = 10/231 (4%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLKGF 61
           + +RVF  M   NV SW A++NGY E+GD  + + LF  M+ ++  + ++ SL +VL   
Sbjct: 286 VGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPAC 345

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD----PDV 117
           ++   + +G+ +H  A+R     +  L  +L+DMYSKCG  D+A +VF   +D     D 
Sbjct: 346 SSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVF---EDDSLCKDA 402

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH-A 176
           ++W ++I+     G  QEA  +++ M ++ ++P+      ++ A + +G    G +I+ +
Sbjct: 403 ISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSS 462

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS-WNALFS 226
           VI  YG E    +   +V M    G++       +A+  +   S W AL S
Sbjct: 463 VINDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKAMPVEPGPSVWGALVS 513


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 170/457 (37%), Positives = 258/457 (56%), Gaps = 7/457 (1%)

Query: 148 VKP--NQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALV--SMYMENGRV 203
           +KP  +Q  L + ++  T  GD +   +I A + +     DT + + L+  S    +G V
Sbjct: 1   MKPMLDQGSLVAAIKRCTRVGDLK---AIQAHMVRANLTQDTFLTSKLIESSAVTLSGHV 57

Query: 204 SYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKAC 263
           +Y  R+F    H +   WN +   +   +SP   + ++  M L G  PN  TF  +LKAC
Sbjct: 58  AYAHRIFSCTHHPNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKAC 117

Query: 264 SSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYT 323
             L  +  G++LH+  +K  LD    +   L+ +Y   GC++ A V FD +   D  +++
Sbjct: 118 CKLLRLCEGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWS 177

Query: 324 AIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKT 383
            +++ YAQ G+A  ALK FR+M+ E + S+ FTLAS +  C  +  L  G+ +HS   K 
Sbjct: 178 TMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKE 237

Query: 384 GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF 443
           G  +D+ + TALV MY+KCGS+D+A  VF+G A RD  +W+ MI GY  HG GEKAL+ F
Sbjct: 238 GVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLF 297

Query: 444 RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGR 503
             M     +P+ +TF  VLSACSH GL+E+G + F ++   Y ITP IKH+ CM+D+  R
Sbjct: 298 DAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCR 357

Query: 504 AGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFP 563
           AG       FI    + PN ++W  LLGAC  HG  +L E  + K+L+L+P    NYV  
Sbjct: 358 AGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPENYVLV 417

Query: 564 SDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           S++ A+ GRW+    VR+L+  +  KK+   S IE++
Sbjct: 418 SNVYASLGRWSSVCQVRSLMKDKAPKKQHGWSSIEIN 454



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 131/272 (48%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A R+F      N+  WN ++ GY+ S      + L+  M       + ++   VLK    
Sbjct: 60  AHRIFSCTHHPNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCK 119

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  GQ +H+  +++G   +  L   L+ +Y+ CG  D A  +F  + +PD  +W  +
Sbjct: 120 LLRLCEGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTM 179

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           ++   Q G   EA K+F  M+  +V  + F L S+V    + G    G+ +H+ + K G 
Sbjct: 180 VSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGV 239

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           + D ++G ALV MY + G +    +VF+ +A +D  +W+ + + +  +   ++ L++F  
Sbjct: 240 KIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDA 299

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQL 275
           M      PN  TF  +L ACS    V  G Q+
Sbjct: 300 MKRSKTIPNCVTFTSVLSACSHSGLVEKGHQI 331



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 120/247 (48%), Gaps = 2/247 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A  +F  MPE +  SW+ +++GYA++G   + + LF  M+        F+L++V+  
Sbjct: 158 MDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGV 217

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             + G +  G+ VH+   + G  +D  L  +LV MYSKCG  DNALKVF  + + DV AW
Sbjct: 218 CGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAW 277

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI-C 179
             +I      G  ++A ++F+ M+ S   PN    TS++ A + +G    G  I   +  
Sbjct: 278 STMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWT 337

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS-WNALFSRFQDYESPDQGL 238
           +Y           +V ++   G V +  +  + +  + +V  W  L    + +   D G 
Sbjct: 338 EYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKDLGE 397

Query: 239 RIFYQML 245
            I  ++L
Sbjct: 398 HISRKIL 404


>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
 gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
          Length = 770

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 177/548 (32%), Positives = 287/548 (52%), Gaps = 12/548 (2%)

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +G + A + VH    + G + D F++ SLV+ Y +C  A +A ++F  + + +VV W A+
Sbjct: 91  TGSLGAARAVHGHMAKTGASADMFVATSLVNAYMRCSAARDARRLFDGMPERNVVTWTAL 150

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +T            ++F  M E    P+ + L + + A   + D   G+ +H    KYG 
Sbjct: 151 VTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGA 210

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR-FQDYESPDQGLRIFY 242
           ES T +GN+L S+Y + G +    R F  I  ++ ++W  + S   +D E  + G+ +F 
Sbjct: 211 ESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEECVELGMSLFI 270

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            ML+ G  PN  T   ++  C +  D+  GKQ+ A + K   + N  V  S + +Y + G
Sbjct: 271 DMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKG 330

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAE-----------MALKCFRKMRLEGIK 351
             ++A   F+ + +  +  + A+I+ YAQ  ++             AL  FR ++   +K
Sbjct: 331 ETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMK 390

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            + FT +S L+ CS +  L  G  +H+  +K+G L D+ V++ALV MY KCG I DA   
Sbjct: 391 PDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKA 450

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F     R   +W  MI GY +HG  ++A++ F  M   G  P+EITFV +LSACS+ GL+
Sbjct: 451 FLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLV 510

Query: 472 EEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLG 531
           EE + +F  +KK Y I P + H+ CMID+  R G+  +  +FI  T   PN  +W +L+ 
Sbjct: 511 EEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVA 570

Query: 532 ACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
            C  HGN+EL    A+KLLEL+PK    Y+   ++  +  RW D + VR L+  + +   
Sbjct: 571 GCRSHGNMELAFYAADKLLELKPKGIETYILLLNMYISTERWQDVARVRKLMKQEDVGIL 630

Query: 592 PSCSWIEV 599
              SWI +
Sbjct: 631 RDRSWITI 638



 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 136/460 (29%), Positives = 234/460 (50%), Gaps = 16/460 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R+F  MPE NVV+W AL+ GY  +      + +F  M +M +  S ++L   L     
Sbjct: 132 ARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLA 191

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           S  +  G+ VH  AI+ G      +  SL  +Y+K G  D+AL+ F+RI + +V+ W  +
Sbjct: 192 SCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTM 251

Query: 124 IT-CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I+ C + + C +    +F  M    V PN+F LTS++       D   G+ + A   K G
Sbjct: 252 ISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIG 311

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNAL---FSRFQDYESPD---- 235
            E++  V N+ + +Y+  G      R+FE +     ++WNA+   +++  D    D    
Sbjct: 312 CETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQAR 371

Query: 236 ----QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
               Q L IF  +     KP++ TF  IL  CS++  +  G+Q+HA TIK     + VV 
Sbjct: 372 SRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVN 431

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
           ++LV+MY+K GC++DA  AF  +  +    +T++I+ Y+Q G+ + A++ F +MRL G++
Sbjct: 432 SALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVR 491

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST--ALVAMYAKCGSIDDAE 409
            NE T  S L+ CS    +        + +K  + ++  V     ++ M+ + G ++DA 
Sbjct: 492 PNEITFVSLLSACSYAGLVEEAEHYFDM-MKKEYCIEPVVDHYGCMIDMFVRLGRVEDAF 550

Query: 410 AVFKGSALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
           +  K +    + A W+ ++ G   HG  E A  A   +L+
Sbjct: 551 SFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLE 590



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 118/428 (27%), Positives = 192/428 (44%), Gaps = 45/428 (10%)

Query: 158 LVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQD 217
           L+    ETG      ++H  + K G  +D  V  +LV+ YM         R+F+ +  ++
Sbjct: 84  LLHRCVETGSLGAARAVHGHMAKTGASADMFVATSLVNAYMRCSAARDARRLFDGMPERN 143

Query: 218 SVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHA 277
            V+W AL + +     P  GL +F +ML  G  P+  T    L AC +  DV  GKQ+H 
Sbjct: 144 VVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQVHG 203

Query: 278 HTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGE-AE 336
           + IK+  +    +G SL  +Y K G L+ A  AF  +  K++  +T +I++ A+  E  E
Sbjct: 204 YAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEECVE 263

Query: 337 MALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALV 396
           + +  F  M ++G+  NEFTL S ++ C     L  G+ + + + K G   ++ V  + +
Sbjct: 264 LGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTM 323

Query: 397 AMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK-----------HGLGEKALEAFRM 445
            +Y + G  D+A  +F+        +WN MI GY +              G +AL  FR 
Sbjct: 324 YLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRD 383

Query: 446 MLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK--------------KIYG---- 486
           +      PD  TF  +LS CS M  +E+G++ H  +IK               +Y     
Sbjct: 384 LKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGC 443

Query: 487 -----------ITPTIKHFACMIDILGRAGKFTEIENFITETKLT---PNALVWENLLGA 532
                       T T   +  MI    + G+  E      E +L    PN + + +LL A
Sbjct: 444 IQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSA 503

Query: 533 CSWHGNIE 540
           CS+ G +E
Sbjct: 504 CSYAGLVE 511



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 95/376 (25%), Positives = 178/376 (47%), Gaps = 45/376 (11%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKV-MHLFCSMKDMEKKFSKFSLSTVLK 59
           ++ A R F  +PE NV++W  +++  AE  +  ++ M LF  M       ++F+L++V+ 
Sbjct: 230 LDSALRAFWRIPEKNVITWTTMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMS 289

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
                  +  G+ V A + ++GC  +  +  S + +Y + G  D A+++F +++D  ++ 
Sbjct: 290 LCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIIT 349

Query: 120 WGAIITCL---------DQQGCCQ--EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ 168
           W A+I+           D Q   +  +A  IF  ++ S +KP+ F  +S++   +     
Sbjct: 350 WNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMAL 409

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228
             GE IHA   K GF SD +V +ALV+MY + G +   ++ F  +  +  V+W ++ S +
Sbjct: 410 EQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGY 469

Query: 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH 288
             +  P + +++F +M L G +PN  TF+ +L ACS           +A  ++   +  H
Sbjct: 470 SQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACS-----------YAGLVE---EAEH 515

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
                  DM  K  C+E             +  Y  +I  + + G  E A   F  ++  
Sbjct: 516 Y-----FDMMKKEYCIEPV-----------VDHYGCMIDMFVRLGRVEDA---FSFIKRT 556

Query: 349 GIKSNEFTLASCLNGC 364
           G + NE   +S + GC
Sbjct: 557 GFEPNEAIWSSLVAGC 572



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 102/223 (45%), Gaps = 1/223 (0%)

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           ML +G       ++ +L  C     +G  + +H H  K     +  V TSLV+ Y +   
Sbjct: 69  MLTEGKAVQSAMYVPLLHRCVETGSLGAARAVHGHMAKTGASADMFVATSLVNAYMRCSA 128

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
             DA   FD +  +++  +TA++T Y    +  + L+ F +M   G   + +TL + LN 
Sbjct: 129 ARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNA 188

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C     +  G+ +H  A+K G      +  +L ++YAK GS+D A   F     ++  +W
Sbjct: 189 CLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITW 248

Query: 424 NMMIGGYVK-HGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC 465
             MI    +     E  +  F  ML +G +P+E T   V+S C
Sbjct: 249 TTMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLC 291



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 96/229 (41%), Gaps = 16/229 (6%)

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404
           M  EG           L+ C    +L   R +H    KTG   DMFV+T+LV  Y +C +
Sbjct: 69  MLTEGKAVQSAMYVPLLHRCVETGSLGAARAVHGHMAKTGASADMFVATSLVNAYMRCSA 128

Query: 405 IDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
             DA  +F G   R+  +W  ++ GY  +      LE F  ML+ G  P   T    L+A
Sbjct: 129 ARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNA 188

Query: 465 CSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKF-TEIENF--ITETKLT 520
           C     ++ GK+ H  +IK  YG          +  +  + G   + +  F  I E    
Sbjct: 189 CLASCDVDLGKQVHGYAIK--YGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEK--- 243

Query: 521 PNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISAT 569
            N + W  ++ AC+       DE+  E  + L   M  + V P++ + T
Sbjct: 244 -NVITWTTMISACAE------DEECVELGMSLFIDMLMDGVMPNEFTLT 285


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 182/600 (30%), Positives = 313/600 (52%), Gaps = 1/600 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A  +F++M + +   WN ++ G+ ++G     +  +  M+    +   F+   V+K 
Sbjct: 76  MKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVRGDNFTYPFVIKA 135

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 +  G+ VH   I+ G  LD ++  SL+ MY+K G  ++A  VF  +   D+V+W
Sbjct: 136 CGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREMPVRDLVSW 195

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I+     G    +   F  M+ S +K ++F +  ++ A +  G  R G+ IH  + +
Sbjct: 196 NSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMR 255

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              E D +V  +LV MY + GR+ Y  R+F+ I  +  V+WNA+   +       +    
Sbjct: 256 SRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFESFAY 315

Query: 241 FYQMLLKG-FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
             +M   G   P+  T I +L  C+ L  +  GK +H   I++    + V+ T+LVDMY 
Sbjct: 316 VRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYG 375

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           + G L+ A   F  +  ++L ++ A+I SY + GE   A+  F+ +  + +K +  T+AS
Sbjct: 376 ECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIAS 435

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L   + +A+L     +H    K     + FVS ++V MY KCG++  A  +F     +D
Sbjct: 436 ILPAYAELASLREAEQIHGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKD 495

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SWN +I  Y  HG G  ++E F  M ++G+ P+  TFV +L +CS  GL+ EG ++F+
Sbjct: 496 VISWNTVIMAYAIHGFGRISIELFSEMREKGFEPNGSTFVSLLLSCSVAGLVNEGWEYFN 555

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           S+K+ Y I P I+H+ C++D++GR G     +NFI E  L P A +W +LL A    G++
Sbjct: 556 SMKRDYNINPGIEHYGCILDLIGRTGNLDHAKNFIEEMPLAPTARIWGSLLTASRNKGDV 615

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           EL E  AE +L LE      YV  S++ A  GRW D   ++  +  +G++K   CS +++
Sbjct: 616 ELAEIAAEHILSLEHDNTGCYVLLSNMYAEAGRWEDVERIKFHMKKEGLEKSVGCSVVDL 675



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 125/461 (27%), Positives = 220/461 (47%), Gaps = 7/461 (1%)

Query: 96  YSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVL 155
           Y + G   NAL +F  ++  D   W  +I      G   +A   ++ M    V+ + F  
Sbjct: 70  YVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVRGDNFTY 129

Query: 156 TSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH 215
             +++A     D   GE +H  + K G + D  +GN+L+ MY + G +     VF  +  
Sbjct: 130 PFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREMPV 189

Query: 216 QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL 275
           +D VSWN++ S +       + L  F +M   G K +  + I IL ACS    +  GK++
Sbjct: 190 RDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEI 249

Query: 276 HAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEA 335
           H   ++  L+ + +V TSLVDMY K G ++ A   FD + +K + A+ A+I  Y+   ++
Sbjct: 250 HCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQS 309

Query: 336 EMALKCFRKMRLEG-IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA 394
             +    RKM+  G +  +  T+ + L  C+ +  +  G+ +H  A++ G L  + + TA
Sbjct: 310 FESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGFLPHLVLETA 369

Query: 395 LVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD 454
           LV MY +CG +  AE +F     R+  SWN MI  Y K+G   KA+  F+ + ++   PD
Sbjct: 370 LVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRKAMTLFQDLCNKTLKPD 429

Query: 455 EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFI 514
             T   +L A + +  + E ++    + K+   + T    + ++ + G+ G        I
Sbjct: 430 ATTIASILPAYAELASLREAEQIHGYVTKLKLDSNTFVSNS-IVFMYGKCGNLLRARE-I 487

Query: 515 TETKLTPNALVWENLLGACSWHG----NIELDEKDAEKLLE 551
            +     + + W  ++ A + HG    +IEL  +  EK  E
Sbjct: 488 FDRMTFKDVISWNTVIMAYAIHGFGRISIELFSEMREKGFE 528



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 108/359 (30%), Positives = 183/359 (50%), Gaps = 11/359 (3%)

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E +++     +S Y+E G +     +FE +   D+  WN +   F D       +  +++
Sbjct: 57  ERNSVSLTRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHR 116

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G + +  T+  ++KAC  L D+  G+++H   IK  LD +  +G SL+ MY K GC
Sbjct: 117 MEFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGC 176

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +E A + F  +  +DL ++ ++I+ Y   G+   +L CFR+M+  GIK + F++   L  
Sbjct: 177 IESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGA 236

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           CS    L NG+ +H   +++   LD+ V T+LV MYAKCG +D AE +F     +   +W
Sbjct: 237 CSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAW 296

Query: 424 NMMIGGYVKHGLGEKALEAF---RMMLDEGYV-PDEITFVVVLSACSHMGLIEEGKK-HF 478
           N MIGGY    L  ++ E+F   R M + G + PD IT + +L  C+ +  I  GK  H 
Sbjct: 297 NAMIGGY---SLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHG 353

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
            +I+   G  P +     ++D+ G  GK    E    +     N + W  ++ + + +G
Sbjct: 354 FAIRN--GFLPHLVLETALVDMYGECGKLKPAECLFGQMN-ERNLISWNAMIASYTKNG 409



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 125/253 (49%), Gaps = 6/253 (2%)

Query: 284 LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFR 343
           ++ N V  T  +  Y + G +++A   F+++   D F +  +I  +   G    A+  + 
Sbjct: 56  VERNSVSLTRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYH 115

Query: 344 KMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403
           +M   G++ + FT    +  C  +  LA G  +H   +K+G  LD+++  +L+ MYAK G
Sbjct: 116 RMEFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIG 175

Query: 404 SIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
            I+ AE VF+   +RD  SWN MI GYV  G G ++L  FR M   G   D  + + +L 
Sbjct: 176 CIESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILG 235

Query: 464 ACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPN 522
           ACS  G +  GK+ H   ++    +   ++    ++D+  + G+    E    +  +T  
Sbjct: 236 ACSLEGFLRNGKEIHCQMMRSRLELDVMVQ--TSLVDMYAKCGRMDYAERLFDQ--ITDK 291

Query: 523 ALV-WENLLGACS 534
           ++V W  ++G  S
Sbjct: 292 SIVAWNAMIGGYS 304


>gi|15240444|ref|NP_198063.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635756|sp|O04659.2|PP398_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g27110
 gi|332006268|gb|AED93651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 191/603 (31%), Positives = 309/603 (51%), Gaps = 11/603 (1%)

Query: 4   AKRVFKSMP-ELNVVSWNALLNGYAESGDGQKVMHLF-----CSMKDMEKKFSKFSLSTV 57
           A+ VF++     +V  WN+L++GY+++      + +F     CS+   +     F+   V
Sbjct: 58  ARHVFENFDIRSDVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDS----FTFPNV 113

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
           +K +   G    G+++H + ++ G   D  ++ SLV MY+K  L +N+L+VF  + + DV
Sbjct: 114 IKAYGALGREFLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDV 173

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
            +W  +I+C  Q G  ++A ++F  M  S  +PN   LT  + A +       G+ IH  
Sbjct: 174 ASWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRK 233

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
             K GFE D  V +ALV MY +   +     VF+ +  +  V+WN++   +         
Sbjct: 234 CVKKGFELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSC 293

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           + I  +M+++G +P+  T   IL ACS   ++  GK +H + I+  ++ +  V  SL+D+
Sbjct: 294 VEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDL 353

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K G    A   F         ++  +I+SY   G    A++ + +M   G+K +  T 
Sbjct: 354 YFKCGEANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTF 413

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
            S L  CS +A L  G+ +H    ++    D  + +AL+ MY+KCG+  +A  +F     
Sbjct: 414 TSVLPACSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPK 473

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           +D  SW +MI  Y  HG   +AL  F  M   G  PD +T + VLSAC H GLI+EG K 
Sbjct: 474 KDVVSWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKF 533

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTP-NALVWENLLGACSWH 536
           FS ++  YGI P I+H++CMIDILGRAG+  E    I +T  T  NA +   L  AC  H
Sbjct: 534 FSQMRSKYGIEPIIEHYSCMIDILGRAGRLLEAYEIIQQTPETSDNAELLSTLFSACCLH 593

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSW 596
               L ++ A  L+E  P   S Y+   ++ A+   W+    VR  +   G++K+P CSW
Sbjct: 594 LEHSLGDRIARLLVENYPDDASTYMVLFNLYASGESWDAARRVRLKMKEMGLRKKPGCSW 653

Query: 597 IEV 599
           IE+
Sbjct: 654 IEM 656



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 140/490 (28%), Positives = 247/490 (50%), Gaps = 9/490 (1%)

Query: 54  LSTVLKGFANSGY-IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF--Y 110
           L ++L+   NS   ++  ++VH   + LG   D  L  SL+++Y  C    +A  VF  +
Sbjct: 6   LLSLLRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENF 65

Query: 111 RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSV-KPNQFVLTSLVRATTETGDQR 169
            I+  DV  W ++++   +     +  ++F  +   S+  P+ F   ++++A    G + 
Sbjct: 66  DIRS-DVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREF 124

Query: 170 CGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
            G  IH ++ K G+  D +V ++LV MY +        +VF+ +  +D  SWN + S F 
Sbjct: 125 LGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFY 184

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
                ++ L +F +M   GF+PN  +  V + ACS L  +  GK++H   +K   + +  
Sbjct: 185 QSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEY 244

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           V ++LVDMY K  CLE A   F  +  K L A+ ++I  Y   G+++  ++   +M +EG
Sbjct: 245 VNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEG 304

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
            + ++ TL S L  CS    L +G+ +H   +++    D++V+ +L+ +Y KCG  + AE
Sbjct: 305 TRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAE 364

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
            VF  +      SWN+MI  Y+  G   KA+E +  M+  G  PD +TF  VL ACS + 
Sbjct: 365 TVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLA 424

Query: 470 LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENF-ITETKLTPNALVWEN 528
            +E+GK+   SI +    T  +   + ++D+  + G   E E F I  +    + + W  
Sbjct: 425 ALEKGKQIHLSISESRLETDELL-LSALLDMYSKCG--NEKEAFRIFNSIPKKDVVSWTV 481

Query: 529 LLGACSWHGN 538
           ++ A   HG 
Sbjct: 482 MISAYGSHGQ 491



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 139/263 (52%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E+A+ VF+ MP  ++V+WN+++ GY   GD +  + +   M     + S+ +L+++L  
Sbjct: 259 LEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMA 318

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            + S  +  G+ +H   IR     D +++CSL+D+Y KCG A+ A  VF + +     +W
Sbjct: 319 CSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESW 378

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+     G   +A ++++ M    VKP+    TS++ A ++      G+ IH  I +
Sbjct: 379 NVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISE 438

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              E+D L+ +AL+ MY + G      R+F +I  +D VSW  + S +  +  P + L  
Sbjct: 439 SRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQ 498

Query: 241 FYQMLLKGFKPNMCTFIVILKAC 263
           F +M   G KP+  T + +L AC
Sbjct: 499 FDEMQKFGLKPDGVTLLAVLSAC 521


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 176/548 (32%), Positives = 292/548 (53%), Gaps = 1/548 (0%)

Query: 53  SLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI 112
           + +++LK  A  G +  G+ VHA     G   +   + +L +MY+KC    +A +VF R+
Sbjct: 61  TFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRM 120

Query: 113 KDPDVVAWGAIITCLDQQGCCQEAAK-IFNLMRESSVKPNQFVLTSLVRATTETGDQRCG 171
              D VAW A++    + G  + A + +  +  E   +P+   L S++ A          
Sbjct: 121 PVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAAC 180

Query: 172 ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY 231
              HA   + G E    V  A++  Y + G +     VF+ +  ++SVSWNA+   +   
Sbjct: 181 REAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQN 240

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
               + L +F +M+ +G      + +  L+AC  L  +  G ++H   ++  LD N  V 
Sbjct: 241 GDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVM 300

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
            +L+ MY K   ++ A   FD L  +   ++ A+I   AQ G +E A++ F +M+LE +K
Sbjct: 301 NALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVK 360

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            + FTL S +   + ++     R +H  +++     D++V TAL+ MYAKCG ++ A  +
Sbjct: 361 PDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARIL 420

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F  +  R   +WN MI GY  HG G+ A+E F  M   G VP+E TF+ VLSACSH GL+
Sbjct: 421 FNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLV 480

Query: 472 EEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLG 531
           +EG+++F+S+K+ YG+ P ++H+  M+D+LGRAGK  E   FI +  + P   V+  +LG
Sbjct: 481 DEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLG 540

Query: 532 ACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
           AC  H N+EL E+ A+K+ EL P+    +V  ++I A    W D + VR  +   G++K 
Sbjct: 541 ACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKT 600

Query: 592 PSCSWIEV 599
           P  S I++
Sbjct: 601 PGWSIIQL 608



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 137/463 (29%), Positives = 231/463 (49%), Gaps = 5/463 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDME-KKFSKFSLSTVLKGFA 62
           A+RVF  MP  + V+WNAL+ GYA +G  +  M +   M++ E ++    +L +VL   A
Sbjct: 113 ARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACA 172

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           N+  + A +  HA AIR G      ++ +++D Y KCG    A  VF  +   + V+W A
Sbjct: 173 NARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNA 232

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I    Q G  +EA  +FN M E  V      + + ++A  E G    G  +H ++ + G
Sbjct: 233 MIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIG 292

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            +S+  V NAL++MY +  RV   S VF+ +  +  VSWNA+          +  +R+F 
Sbjct: 293 LDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFT 352

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M L+  KP+  T + ++ A + +SD    + +H ++I+  LD +  V T+L+DMY K G
Sbjct: 353 RMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCG 412

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            +  A + F+S   + +  + A+I  Y   G  + A++ F +M+  GI  NE T  S L+
Sbjct: 413 RVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLS 472

Query: 363 GCSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
            CS    +  GR    S+    G    M     +V +  + G +D+A A  +   +    
Sbjct: 473 ACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGL 532

Query: 422 S-WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           S +  M+G    H   E A E+ + + + G  P E  + V+L+
Sbjct: 533 SVYGAMLGACKLHKNVELAEESAQKIFELG--PQEGVYHVLLA 573



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 84/166 (50%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++LA  VF  +     VSWNA++ G A++G  +  + LF  M+    K   F+L +V+  
Sbjct: 313 VDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPA 372

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+       + +H  +IRL    D ++  +L+DMY+KCG  + A  +F   ++  V+ W
Sbjct: 373 LADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITW 432

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
            A+I      G  + A ++F  M+   + PN+    S++ A +  G
Sbjct: 433 NAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAG 478



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 18/160 (11%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + +A+ +F S  E +V++WNA+++GY   G G+  + LF  MK +    ++ +  +VL  
Sbjct: 414 VNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSA 473

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            +++G +  G +   +M    G         ++VD+  + G  D A     ++  DP + 
Sbjct: 474 CSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLS 533

Query: 119 AWGAIITCLDQQGCC----------QEAAKIFNLMRESSV 148
            +GA++      G C          + A KIF L  +  V
Sbjct: 534 VYGAML------GACKLHKNVELAEESAQKIFELGPQEGV 567


>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
 gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
          Length = 693

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 183/600 (30%), Positives = 308/600 (51%), Gaps = 3/600 (0%)

Query: 4   AKRVFKSMP-ELNVVSWNALLNGYAESGDGQKVMHLFCSMK-DMEKKFSKFSLSTVLKGF 61
           A+ VF++    L+V  WNALL+ Y  +    + + LF  +  +   +   ++   VLK  
Sbjct: 57  AELVFQTNDCPLDVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKAC 116

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
              G +  G+ +H   ++ G   D F+  SL++MY+KC    +A+K+F      DV  W 
Sbjct: 117 GGLGRVIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWN 176

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           A+I+C  + G  + A K F+ M+E   +PN    T +V + T   +   G+ +H  + + 
Sbjct: 177 AVISCYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIER 236

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
               D  V +ALV MY + G +     VFE I  +++++WNA+ + +         + + 
Sbjct: 237 RILLDAFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELL 296

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M  +G KP + T   I+ A S    +  GK +H + +++ +D +  +  SL+D Y K 
Sbjct: 297 MRMNDEGTKPTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKC 356

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G +  A   F +++  ++ ++  +I+ +   G    AL  +  M+   +K +  T +S L
Sbjct: 357 GYVSSAETIFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTL 416

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           + CS +A L  GR LH   +      +  V  AL+ MYAKCG +D+A  +F     RD  
Sbjct: 417 SACSQLAALDKGRELHYCIINHKLEANEIVMGALLDMYAKCGDVDEARKLFHQLPKRDLV 476

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SW  MI  Y  HG   +AL  F  M       D +TF+ VLSACSH GL++EG  +F+ +
Sbjct: 477 SWTSMIFAYGSHGQASEALRLFDEMQKLNVRADSVTFLAVLSACSHAGLVDEGYMYFNEM 536

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNAL-VWENLLGACSWHGNIE 540
              Y I P I+H++C+ID+LGRAG+  E    +  +K T + + +   L  AC  H N  
Sbjct: 537 VVQYDIKPGIEHYSCLIDLLGRAGRLHEAYEILQRSKETRSDIGLLSTLFSACLLHNNFV 596

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           L  +  + L+E++P   S Y+  S++ A+  +W++   VR  +   G+KK P CSWIE++
Sbjct: 597 LGIQIGKMLIEVDPDDPSTYILLSNMYASVNKWDEVRKVRRKMKELGLKKSPGCSWIEIN 656



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 135/490 (27%), Positives = 238/490 (48%), Gaps = 8/490 (1%)

Query: 53  SLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI 112
           +L + L+   +S  +K G+++H      G   +  LS SL+  Y  C    +A  VF   
Sbjct: 5   TLLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVFQTN 64

Query: 113 KDP-DVVAWGAIITCLDQQGCCQEAAKIFNLMR-ESSVKPNQFVLTSLVRATTETGDQRC 170
             P DV  W A+++         EA ++F+ +   S V+P+ +    +++A    G    
Sbjct: 65  DCPLDVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVIY 124

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
           G  IH  + K G   D  VG++L++MY +  +     ++F+    +D   WNA+ S +  
Sbjct: 125 GRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFK 184

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
               +  L+ F +M   GF+PN  TF V++ +C+ L ++  GK++H   I+  +  +  V
Sbjct: 185 DGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDAFV 244

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
            ++LVDMY K GCLE A   F+ +  K+   + A+IT Y+  G++   ++   +M  EG 
Sbjct: 245 LSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEGT 304

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
           K    TL S +   S    L +G+ +H   ++    +D+F+  +L+  Y KCG +  AE 
Sbjct: 305 KPTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSSAET 364

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           +F+  +  +  SWN+MI G+V  G   +AL  +  M +    PD +TF   LSACS +  
Sbjct: 365 IFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACSQLAA 424

Query: 471 IEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV-WEN 528
           +++G++ H+  I         +     ++D+  + G   E      +  L    LV W +
Sbjct: 425 LDKGRELHYCIINHKLEANEIV--MGALLDMYAKCGDVDEARKLFHQ--LPKRDLVSWTS 480

Query: 529 LLGACSWHGN 538
           ++ A   HG 
Sbjct: 481 MIFAYGSHGQ 490



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 160/312 (51%), Gaps = 9/312 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E+AK VF+ +P  N ++WNA++ GY+  GD +  + L   M D   K +  +L++++  
Sbjct: 258 LEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEGTKPTLMTLTSIIYA 317

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            + S  ++ G+ +H   +R    +D F+  SL+D Y KCG   +A  +F  I   +VV+W
Sbjct: 318 SSRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSSAETIFRTISKNEVVSW 377

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+     G   +A  I++ M+E  VKP+    +S + A ++      G  +H  I  
Sbjct: 378 NVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACSQLAALDKGRELHYCIIN 437

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +  E++ +V  AL+ MY + G V    ++F  +  +D VSW ++   +  +    + LR+
Sbjct: 438 HKLEANEIVMGALLDMYAKCGDVDEARKLFHQLPKRDLVSWTSMIFAYGSHGQASEALRL 497

Query: 241 FYQMLLKGFKPNMCTFIVILKACS--SLSDVG---FGKQLHAHTIKHSLDGNHVVGTSLV 295
           F +M     + +  TF+ +L ACS   L D G   F + +  + IK  ++      + L+
Sbjct: 498 FDEMQKLNVRADSVTFLAVLSACSHAGLVDEGYMYFNEMVVQYDIKPGIEHY----SCLI 553

Query: 296 DMYDKSGCLEDA 307
           D+  ++G L +A
Sbjct: 554 DLLGRAGRLHEA 565



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 89/203 (43%), Gaps = 6/203 (2%)

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK-G 414
           TL S L  C+    L  G+L+H      G   ++ +S +L+  Y  C     AE VF+  
Sbjct: 5   TLLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVFQTN 64

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV-PDEITFVVVLSACSHMGLIEE 473
               D + WN ++  Y  +    +AL+ F  +    YV PD  T+ VVL AC  +G +  
Sbjct: 65  DCPLDVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVIY 124

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           G++  + + K  G+   +   + ++++  +  +F +      E     +   W  ++   
Sbjct: 125 GRRIHNHLLKT-GLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFP-QRDVGCWNAVISCY 182

Query: 534 SWHGNIELDEKDAEKLLEL--EP 554
              G  E+  K  +K+ EL  EP
Sbjct: 183 FKDGKAEMALKTFDKMKELGFEP 205


>gi|357128440|ref|XP_003565881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Brachypodium distachyon]
          Length = 682

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 181/535 (33%), Positives = 287/535 (53%), Gaps = 4/535 (0%)

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
           G +  G+ +HA  IR     D      L+  Y KCG    A ++F  +   + V+   ++
Sbjct: 25  GELCTGKAIHAQMIR-AAHFDVIQHNHLIAFYGKCGRLGLARQMFDAMPSRNAVSGNLLM 83

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
           +     G   +A     L++ +    N++VL++ + A         G   H    K G +
Sbjct: 84  SGYASAGRHSDA---LALLKAADFSLNEYVLSTALSAAAHVRSYGMGRQCHGYAVKSGLQ 140

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
               V NA++ MY +   V    +VFE ++  D  ++N++ + F D    D  +RI   M
Sbjct: 141 EHPYVCNAVLHMYCQCAHVEDAVKVFENVSGFDIFAFNSMINGFLDLGEFDGSIRIVRSM 200

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
           + +  + +  +++ +L  C+S  ++  G Q+HA  +K  L+ N  VG++LVDMY K  C 
Sbjct: 201 VGEVEQWDHVSYVAVLGHCASTKELLLGCQVHAQALKRRLEQNVYVGSALVDMYGKCDCA 260

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
            DA  AF+ L  K++ ++TA++T+Y Q    E AL+ F  + +EG++ NEFT A  LN C
Sbjct: 261 RDAHSAFEVLPEKNVVSWTAVMTAYTQNERFEDALQLFLDLEIEGVRPNEFTYAVALNSC 320

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
           + +A L NG  L + A+KTGH   + V  AL+ MY+K GSI DA  VF     RD  SWN
Sbjct: 321 AGLAALKNGNALSASAMKTGHWGALSVCNALMNMYSKSGSIHDAWRVFLSMPWRDVVSWN 380

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
            +I GY  HGL  +A+  F  ML    VP  +TFV VL AC+ +GL++EG  + + + K 
Sbjct: 381 SVIIGYAHHGLAREAMCVFHDMLLAEIVPSYVTFVGVLLACAQLGLVDEGLYYLNIMMKE 440

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEK 544
            GI P  +H+ CM+ +L RAG+  E E FI    +  + + W++LL +C  + N  L  +
Sbjct: 441 MGIKPGREHYTCMVGLLCRAGRLDEAEQFILSNCIGTDVVAWKSLLSSCQVYKNYGLGHR 500

Query: 545 DAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            AE++L+L+P     YV  S++ A   RW+    VR L+  +G++KEP  SWI+V
Sbjct: 501 VAEQILQLKPNDVGTYVLLSNMYAKANRWDGVVKVRKLMRERGVRKEPGVSWIQV 555



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 118/470 (25%), Positives = 219/470 (46%), Gaps = 21/470 (4%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           LA+++F +MP  N VS N L++GYA +G     + L   +K  +   +++ LST L   A
Sbjct: 63  LARQMFDAMPSRNAVSGNLLMSGYASAGRHSDALAL---LKAADFSLNEYVLSTALSAAA 119

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           +      G+  H  A++ G     ++  +++ MY +C   ++A+KVF  +   D+ A+ +
Sbjct: 120 HVRSYGMGRQCHGYAVKSGLQEHPYVCNAVLHMYCQCAHVEDAVKVFENVSGFDIFAFNS 179

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I      G    + +I   M     + +     +++     T +   G  +HA   K  
Sbjct: 180 MINGFLDLGEFDGSIRIVRSMVGEVEQWDHVSYVAVLGHCASTKELLLGCQVHAQALKRR 239

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            E +  VG+ALV MY +          FE +  ++ VSW A+ + +   E  +  L++F 
Sbjct: 240 LEQNVYVGSALVDMYGKCDCARDAHSAFEVLPEKNVVSWTAVMTAYTQNERFEDALQLFL 299

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            + ++G +PN  T+ V L +C+ L+ +  G  L A  +K    G   V  +L++MY KSG
Sbjct: 300 DLEIEGVRPNEFTYAVALNSCAGLAALKNGNALSASAMKTGHWGALSVCNALMNMYSKSG 359

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            + DA   F S+  +D+ ++ ++I  YA  G A  A+  F  M L  I  +  T    L 
Sbjct: 360 SIHDAWRVFLSMPWRDVVSWNSVIIGYAHHGLAREAMCVFHDMLLAEIVPSYVTFVGVLL 419

Query: 363 GCSPVATLANGR-----LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
            C+ +  +  G      ++  + +K G   + +  T +V +  + G +D+AE     + +
Sbjct: 420 ACAQLGLVDEGLYYLNIMMKEMGIKPGR--EHY--TCMVGLLCRAGRLDEAEQFILSNCI 475

Query: 418 -RDTASWNMMIGG---YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
             D  +W  ++     Y  +GLG +  E    +      P+++   V+LS
Sbjct: 476 GTDVVAWKSLLSSCQVYKNYGLGHRVAEQILQL-----KPNDVGTYVLLS 520



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 141/272 (51%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A +VF+++   ++ ++N+++NG+ + G+    + +  SM    +++   S   VL  
Sbjct: 159 VEDAVKVFENVSGFDIFAFNSMINGFLDLGEFDGSIRIVRSMVGEVEQWDHVSYVAVLGH 218

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A++  +  G  VHA A++     + ++  +LVDMY KC  A +A   F  + + +VV+W
Sbjct: 219 CASTKELLLGCQVHAQALKRRLEQNVYVGSALVDMYGKCDCARDAHSAFEVLPEKNVVSW 278

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A++T   Q    ++A ++F  +    V+PN+F     + +       + G ++ A   K
Sbjct: 279 TAVMTAYTQNERFEDALQLFLDLEIEGVRPNEFTYAVALNSCAGLAALKNGNALSASAMK 338

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G      V NAL++MY ++G +    RVF ++  +D VSWN++   +  +    + + +
Sbjct: 339 TGHWGALSVCNALMNMYSKSGSIHDAWRVFLSMPWRDVVSWNSVIIGYAHHGLAREAMCV 398

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFG 272
           F+ MLL    P+  TF+ +L AC+ L  V  G
Sbjct: 399 FHDMLLAEIVPSYVTFVGVLLACAQLGLVDEG 430


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 174/582 (29%), Positives = 298/582 (51%)

Query: 20  NALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIR 79
           N  L   ++ G  ++       M D +   +  S   + +       +  G+++H    R
Sbjct: 56  NLHLVSLSKQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRR 115

Query: 80  LGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKI 139
                   +   L+ MY  CG   +  KVF  +   ++V+W  +I+   + G  ++A ++
Sbjct: 116 TVKNPSGSIENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRL 175

Query: 140 FNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYME 199
           F+ M+ S ++PN  V  SL+++         G+ IH+ + +    ++  V  A+ +MY+ 
Sbjct: 176 FSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVR 235

Query: 200 NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVI 259
            G +     VF+ +  Q++V+W  L   +   +  +  L +F +M ++G + +   F ++
Sbjct: 236 CGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIV 295

Query: 260 LKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL 319
           LK C  L D   G+Q+H+H +K   +    VGT LVD Y K G +E A  +F  ++  + 
Sbjct: 296 LKVCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPND 355

Query: 320 FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSI 379
            +++A+I+ ++Q+G  E  +K F  +R EG+  N F   S    C+  A L  G   H  
Sbjct: 356 VSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGD 415

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
           A+K G +  ++  +A+V MY+KCG +D A   F+     D  +W  +I GY  HG   +A
Sbjct: 416 AIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEA 475

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMID 499
           L  FR M   G  P+ +TF+ VL+ACSH GL+ E K++  S+ + YG+ PTI H+ CMID
Sbjct: 476 LGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMID 535

Query: 500 ILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESN 559
              RAG   E    I      P+A+ W++LLG C  H +++L +  AE L  L+P   + 
Sbjct: 536 TYSRAGLLQEALELINRMPFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPGDTAG 595

Query: 560 YVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           Y+   ++ +  G+W +   VR L++ + +KKE SCSWI V G
Sbjct: 596 YILLFNLYSAFGKWEEAGHVRKLMAERELKKEVSCSWISVKG 637



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 137/511 (26%), Positives = 243/511 (47%), Gaps = 16/511 (3%)

Query: 5   KRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANS 64
           ++VF  M   N+VSW  +++ YA++G+ +K + LF  M+    + +     ++L+     
Sbjct: 142 QKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGP 201

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
            +++ G+ +H+  IR     +  +  ++ +MY +CG  + A  VF  +   + V W  ++
Sbjct: 202 SFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLM 261

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
               Q    + A ++F  M    V+ ++FV + +++      D   G  IH+ I K G E
Sbjct: 262 VGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQIHSHIVKLGAE 321

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
           S+  VG  LV  Y++ G +    R F  I+  + VSW+AL S F      +  ++IF  +
Sbjct: 322 SEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSL 381

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
             +G   N   +  + +AC++ +++  G Q H   IK  L       +++V MY K G L
Sbjct: 382 RSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRL 441

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
           + A  AF+S+   D  A+TAII+ YA  G A  AL  FR+M+  G++ N  T  + L  C
Sbjct: 442 DYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTAC 501

Query: 365 SPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA-EAVFKGSALRDTAS 422
           S    +A  +  L S++   G    +     ++  Y++ G + +A E + +     D  S
Sbjct: 502 SHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGLLQEALELINRMPFEPDAMS 561

Query: 423 WNMMIGGYVKH---GLGEKALEA-FRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           W  ++GG   H    LG+ A E  FR  LD G   D   ++++ +  S  G  EE     
Sbjct: 562 WKSLLGGCWAHCDLKLGKIAAENLFR--LDPG---DTAGYILLFNLYSAFGKWEEA---- 612

Query: 479 SSIKKIYGITPTIKHFAC-MIDILGRAGKFT 508
             ++K+       K  +C  I + G+  +F 
Sbjct: 613 GHVRKLMAERELKKEVSCSWISVKGQVHRFV 643



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/312 (30%), Positives = 153/312 (49%), Gaps = 9/312 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E AK VF  M   N V+W  L+ GY ++   +  + LF  M     +  +F  S VLK 
Sbjct: 239 LEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKV 298

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                    G+ +H+  ++LG   +  +   LVD Y KCG  ++A + F RI +P+ V+W
Sbjct: 299 CCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSW 358

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I+   Q G  ++  KIF  +R   V  N F+ TS+ +A     +   G   H    K
Sbjct: 359 SALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIK 418

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G  S     +A+V+MY + GR+ Y  R FE+I   D+V+W A+ S +  + +  + L  
Sbjct: 419 RGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGF 478

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL-----HAHTIKHSLDGNHVVGTSLV 295
           F +M   G +PN  TFI +L ACS    V   KQ        + +K ++D        ++
Sbjct: 479 FRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDC----MI 534

Query: 296 DMYDKSGCLEDA 307
           D Y ++G L++A
Sbjct: 535 DTYSRAGLLQEA 546



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 138/320 (43%), Gaps = 36/320 (11%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A R F  + E N VSW+AL++G+++SG  +  + +F S++      + F  ++V + 
Sbjct: 340 IESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQA 399

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    +  G   H  AI+ G     +   ++V MYSKCG  D A + F  I +PD VAW
Sbjct: 400 CAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAW 459

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            AII+     G   EA   F  M+   V+PN     +++ A + +G              
Sbjct: 460 TAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSG-------------- 505

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
                  LV  A    Y+ +    YG  V   I H D      +   +       + L +
Sbjct: 506 -------LVAEA--KQYLGSMSRDYG--VKPTIDHYD-----CMIDTYSRAGLLQEALEL 549

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV-DMYD 299
             +M    F+P+  ++  +L  C +  D+  GK    +  +  LD     G  L+ ++Y 
Sbjct: 550 INRM---PFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFR--LDPGDTAGYILLFNLYS 604

Query: 300 KSGCLEDAGVAFDSLANKDL 319
             G  E+AG     +A ++L
Sbjct: 605 AFGKWEEAGHVRKLMAEREL 624


>gi|302771700|ref|XP_002969268.1| hypothetical protein SELMODRAFT_92008 [Selaginella moellendorffii]
 gi|300162744|gb|EFJ29356.1| hypothetical protein SELMODRAFT_92008 [Selaginella moellendorffii]
          Length = 849

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 183/572 (31%), Positives = 300/572 (52%), Gaps = 9/572 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+ VF  M   +V SWNA++   A+ G   + + LF  M   E    K +L   L  
Sbjct: 275 LDRARDVFHRMKRWDVKSWNAMVAALAQHGFSSEALELFRRMPS-EVAVDKTTLVIALST 333

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    ++ G+ +H+   RLG   D     +LV MYS+CG    A +VF  I   +VV+W
Sbjct: 334 CAAPESLEDGKSIHSRVARLGLETDVVAGTALVTMYSRCGDLGEARRVFDGILGKNVVSW 393

Query: 121 GAIITCLDQ-QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
             +I    + +     A +IF LM    V+P +   T+ +   +    Q  G+ +H  I 
Sbjct: 394 NNMIAAYGRDESLHSRALEIFRLMLLDGVRPTR---TTALNVVSAVECQSVGKQLHGWIV 450

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
             G  SD+ +G+ALV+MY   G +    RVFE I  +D  +WNA+      +  P + L 
Sbjct: 451 DTGLYSDSFIGSALVNMYERTGSLGDARRVFEKIIERDVFAWNAIVGVCVGHGQPREALE 510

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
            F +MLL+G   N  TF++ L A S    V +G++LH    +  L+ ++ V  +L+ MY 
Sbjct: 511 WFSRMLLEGASGNRATFLLALSAVSP-DRVCYGRRLHGLIAESGLEADNNVANALISMYA 569

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           +   LEDA   FD L +K + ++T++I +    G  + A+  F++M LE    +  T  +
Sbjct: 570 RCKSLEDARNTFDRLEDKSIVSWTSVIAACVDLGSCQEAIDLFQRMELE---PDRVTFTT 626

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L  C+ V+    G+L+HS A + G   ++FV+TAL+ M++K G++ +A  +F+      
Sbjct: 627 VLEACTIVSAHREGKLVHSRARELGLESNVFVATALIHMHSKFGNLGEARRIFEAVEAPT 686

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
            A WN M+GGY + G  +  ++ F  M   G  PD ITF+ V+SACSH GL+E+G + F+
Sbjct: 687 LACWNAMLGGYAQTGHSQSVIDFFHAMQQRGVAPDHITFLAVVSACSHAGLVEKGARTFA 746

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           S+   YG+   ++ + C+ID+L RAG+  E  +F+      P+ + W+ LL AC   G++
Sbjct: 747 SMGTDYGVGHGLEDYGCLIDLLARAGQLEEAYDFLQGMPCGPSDVTWKTLLAACKIQGDV 806

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQG 571
                 A  ++E EP   + +V  S++S+  G
Sbjct: 807 RRGSAAARSVIEREPYGAAAFVELSNMSSIAG 838



 Score =  244 bits (624), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 166/568 (29%), Positives = 278/568 (48%), Gaps = 27/568 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A R F+ MP  +V+SW  ++  YA +G   +    +  M       +  +   VL   ++
Sbjct: 180 AARFFQRMPRRDVISWTGMVTAYARNGHIAEAFGYYLRMLLEGVVPNNITFLAVLAACSS 239

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +   +  ++V+   +      D  ++ + ++M+SKCG  D A  VF+R+K  DV +W A+
Sbjct: 240 A---RDAELVYGNVVEAEWESDTMVANASINMFSKCGCLDRARDVFHRMKRWDVKSWNAM 296

Query: 124 ITCLDQQGCCQEAAKIFNLM-RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +  L Q G   EA ++F  M  E +V     V+     A  E+ +   G+SIH+ + + G
Sbjct: 297 VAALAQHGFSSEALELFRRMPSEVAVDKTTLVIALSTCAAPESLED--GKSIHSRVARLG 354

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES-PDQGLRIF 241
            E+D + G ALV+MY   G +    RVF+ I  ++ VSWN + + +   ES   + L IF
Sbjct: 355 LETDVVAGTALVTMYSRCGDLGEARRVFDGILGKNVVSWNNMIAAYGRDESLHSRALEIF 414

Query: 242 YQMLLKGFKPNMCTFIVILKA--CSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
             MLL G +P   T + ++ A  C S+     GKQLH   +   L  +  +G++LV+MY+
Sbjct: 415 RLMLLDGVRPTRTTALNVVSAVECQSV-----GKQLHGWIVDTGLYSDSFIGSALVNMYE 469

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           ++G L DA   F+ +  +D+FA+ AI+      G+   AL+ F +M LEG   N  T   
Sbjct: 470 RTGSLGDARRVFEKIIERDVFAWNAIVGVCVGHGQPREALEWFSRMLLEGASGNRATFLL 529

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L+  SP   +  GR LH +  ++G   D  V+ AL++MYA+C S++DA   F     + 
Sbjct: 530 ALSAVSP-DRVCYGRRLHGLIAESGLEADNNVANALISMYARCKSLEDARNTFDRLEDKS 588

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SW  +I   V  G  ++A++ F+ M  E   PD +TF  VL AC+ +    EGK   S
Sbjct: 589 IVSWTSVIAACVDLGSCQEAIDLFQRMELE---PDRVTFTTVLEACTIVSAHREGKLVHS 645

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
             +++ G+   +     +I +  + G   E    I E    P    W  +LG  +  G+ 
Sbjct: 646 RAREL-GLESNVFVATALIHMHSKFGNLGEARR-IFEAVEAPTLACWNAMLGGYAQTGH- 702

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDIS 567
                 ++ +++    M+   V P  I+
Sbjct: 703 ------SQSVIDFFHAMQQRGVAPDHIT 724



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 150/553 (27%), Positives = 265/553 (47%), Gaps = 17/553 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A RVF+ M + ++V W +++  + +  D  +    F  M+       + +  ++L    +
Sbjct: 82  ASRVFEQMLDRSMVLWTSMVTAFVDDEDVDRAWLFFFRMQLEGVLPDRVTFISILNACES 141

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G++VH + I      D  +  +L+ M +KC   D A + F R+   DV++W  +
Sbjct: 142 ---LAQGELVHRLIIDKNLESDVVIGNALMKMLAKCYDLDGAARFFQRMPRRDVISWTGM 198

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +T   + G   EA   +  M    V PN     +++ A +   D    E ++  + +  +
Sbjct: 199 VTAYARNGHIAEAFGYYLRMLLEGVVPNNITFLAVLAACSSARD---AELVYGNVVEAEW 255

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           ESDT+V NA ++M+ + G +     VF  +   D  SWNA+ +    +    + L +F +
Sbjct: 256 ESDTMVANASINMFSKCGCLDRARDVFHRMKRWDVKSWNAMVAALAQHGFSSEALELFRR 315

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +    +  T ++ L  C++   +  GK +H+   +  L+ + V GT+LV MY + G 
Sbjct: 316 MPSE-VAVDKTTLVIALSTCAAPESLEDGKSIHSRVARLGLETDVVAGTALVTMYSRCGD 374

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAE-MALKCFRKMRLEGIKSNEFTLASCLN 362
           L +A   FD +  K++ ++  +I +Y +       AL+ FR M L+G++    T  + LN
Sbjct: 375 LGEARRVFDGILGKNVVSWNNMIAAYGRDESLHSRALEIFRLMLLDGVRP---TRTTALN 431

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
             S V   + G+ LH   V TG   D F+ +ALV MY + GS+ DA  VF+    RD  +
Sbjct: 432 VVSAVECQSVGKQLHGWIVDTGLYSDSFIGSALVNMYERTGSLGDARRVFEKIIERDVFA 491

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN ++G  V HG   +ALE F  ML EG   +  TF++ LSA S    +  G++    I 
Sbjct: 492 WNAIVGVCVGHGQPREALEWFSRMLLEGASGNRATFLLALSAVSP-DRVCYGRRLHGLIA 550

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV-WENLLGACSWHGNIEL 541
           +  G+         +I +  R     +  N  T  +L   ++V W +++ AC   G+ + 
Sbjct: 551 E-SGLEADNNVANALISMYARCKSLEDARN--TFDRLEDKSIVSWTSVIAACVDLGSCQ- 606

Query: 542 DEKDAEKLLELEP 554
           +  D  + +ELEP
Sbjct: 607 EAIDLFQRMELEP 619



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 127/467 (27%), Positives = 226/467 (48%), Gaps = 29/467 (6%)

Query: 81  GCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIF 140
           G  LD F   S+V M+ KC    +A +VF ++ D  +V W +++T          A   F
Sbjct: 58  GILLDGFFGASVVRMFIKCRSIHDASRVFEQMLDRSMVLWTSMVTAFVDDEDVDRAWLFF 117

Query: 141 NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMEN 200
             M+   V P++    S++ A         GE +H +I     ESD ++GNAL+ M  + 
Sbjct: 118 FRMQLEGVLPDRVTFISILNACESLAQ---GELVHRLIIDKNLESDVVIGNALMKMLAKC 174

Query: 201 GRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVIL 260
             +   +R F+ +  +D +SW  + + +       +    + +MLL+G  PN  TF+ +L
Sbjct: 175 YDLDGAARFFQRMPRRDVISWTGMVTAYARNGHIAEAFGYYLRMLLEGVVPNNITFLAVL 234

Query: 261 KACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLF 320
            ACSS  D    + ++ + ++   + + +V  + ++M+ K GCL+ A   F  +   D+ 
Sbjct: 235 AACSSARD---AELVYGNVVEAEWESDTMVANASINMFSKCGCLDRARDVFHRMKRWDVK 291

Query: 321 AYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIA 380
           ++ A++ + AQ G +  AL+ FR+M  E +  ++ TL   L+ C+   +L +G+ +HS  
Sbjct: 292 SWNAMVAALAQHGFSSEALELFRRMPSE-VAVDKTTLVIALSTCAAPESLEDGKSIHSRV 350

Query: 381 VKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK-HGLGEKA 439
            + G   D+   TALV MY++CG + +A  VF G   ++  SWN MI  Y +   L  +A
Sbjct: 351 ARLGLETDVVAGTALVTMYSRCGDLGEARRVFDGILGKNVVSWNNMIAAYGRDESLHSRA 410

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSA--CSHMGLIEEGKKHFSSIKKIYGITPTIKHF--- 494
           LE FR+ML +G  P   T + V+SA  C  +G            K+++G       +   
Sbjct: 411 LEIFRLMLLDGVRPTRTTALNVVSAVECQSVG------------KQLHGWIVDTGLYSDS 458

Query: 495 ---ACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
              + ++++  R G   +    + E  +  +   W  ++G C  HG 
Sbjct: 459 FIGSALVNMYERTGSLGDARR-VFEKIIERDVFAWNAIVGVCVGHGQ 504



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 116/396 (29%), Positives = 195/396 (49%), Gaps = 15/396 (3%)

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
           S+++ I   G   D   G ++V M+++   +   SRVFE +  +  V W ++ + F D E
Sbjct: 49  SVYSSIQAQGILLDGFFGASVVRMFIKCRSIHDASRVFEQMLDRSMVLWTSMVTAFVDDE 108

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
             D+    F++M L+G  P+  TFI IL AC SL+    G+ +H   I  +L+ + V+G 
Sbjct: 109 DVDRAWLFFFRMQLEGVLPDRVTFISILNACESLAQ---GELVHRLIIDKNLESDVVIGN 165

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           +L+ M  K   L+ A   F  +  +D+ ++T ++T+YA+ G    A   + +M LEG+  
Sbjct: 166 ALMKMLAKCYDLDGAARFFQRMPRRDVISWTGMVTAYARNGHIAEAFGYYLRMLLEGVVP 225

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
           N  T  + L  CS   +  +  L++   V+     D  V+ A + M++KCG +D A  VF
Sbjct: 226 NNITFLAVLAACS---SARDAELVYGNVVEAEWESDTMVANASINMFSKCGCLDRARDVF 282

Query: 413 KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE 472
                 D  SWN M+    +HG   +ALE FR M  E  V D+ T V+ LS C+    +E
Sbjct: 283 HRMKRWDVKSWNAMVAALAQHGFSSEALELFRRMPSEVAV-DKTTLVIALSTCAAPESLE 341

Query: 473 EGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
           +GK   S + ++ G+   +     ++ +  R G   E    + +  L  N + W N++ A
Sbjct: 342 DGKSIHSRVARL-GLETDVVAGTALVTMYSRCGDLGEARR-VFDGILGKNVVSWNNMIAA 399

Query: 533 CSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISA 568
              +G    DE    + LE+   M  + V P+  +A
Sbjct: 400 ---YGR---DESLHSRALEIFRLMLLDGVRPTRTTA 429



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 86/212 (40%), Gaps = 32/212 (15%)

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           +N C+    L     ++S     G LLD F   ++V M+ KC SI DA  VF+    R  
Sbjct: 35  VNLCAERKLLHEATSVYSSIQAQGILLDGFFGASVVRMFIKCRSIHDASRVFEQMLDRSM 94

Query: 421 ASWNMMIGGYVKHGLGEKA-LEAFRMMLDEGYVPDEITFVVVLSACS--------HMGLI 471
             W  M+  +V     ++A L  FRM L EG +PD +TF+ +L+AC         H  +I
Sbjct: 95  VLWTSMVTAFVDDEDVDRAWLFFFRMQL-EGVLPDRVTFISILNACESLAQGELVHRLII 153

Query: 472 EE--------GKKHFSSIKKIYGITPTIKHF-----------ACMIDILGRAGKFTEIEN 512
           ++        G      + K Y +    + F             M+    R G   E   
Sbjct: 154 DKNLESDVVIGNALMKMLAKCYDLDGAARFFQRMPRRDVISWTGMVTAYARNGHIAEAFG 213

Query: 513 FITETKL---TPNALVWENLLGACSWHGNIEL 541
           +     L    PN + +  +L ACS   + EL
Sbjct: 214 YYLRMLLEGVVPNNITFLAVLAACSSARDAEL 245


>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
 gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
          Length = 1108

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 186/588 (31%), Positives = 310/588 (52%), Gaps = 7/588 (1%)

Query: 15  NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVH 74
           +V+SWN +L    +     KV++ F  M       +K S   +L   +NS  +  G+ +H
Sbjct: 401 DVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIH 460

Query: 75  AMAI-RLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD--VVAWGAIITCLDQQG 131
           ++ + R    ++  ++  LV MY KCG    A  VF  +  P   +V W  ++    Q  
Sbjct: 461 SLILTRRRDYVESSVATMLVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGAYAQND 520

Query: 132 CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGN 191
             +EA      M +  V P+    TS++ +   + +    + +   I + G+ S  L   
Sbjct: 521 RSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCSQE---AQVLRMCILESGYRSACL-ET 576

Query: 192 ALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKP 251
           AL+SM+     +     VF+ + H D VSW A+ S   +     +   +F +M L+G  P
Sbjct: 577 ALISMHGRCRELEQARSVFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIP 636

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF 311
           +  T    L  C   + +G GK +HA   +  L+ +  V  +L++MY   G   +A   F
Sbjct: 637 DKFTLATTLDTCLDSTTLGLGKIIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFF 696

Query: 312 DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLA 371
           +++  +DL ++  +  +YAQAG A+ A+  FR M+LEG+K ++ T ++ LN     A ++
Sbjct: 697 ETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVS 756

Query: 372 NGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV 431
           +G+L H +A ++G   D+ V+T LV +YAKCG +D+A ++F+G+        N +IG   
Sbjct: 757 DGKLFHGLAAESGLDSDVSVATGLVKLYAKCGKLDEAISLFRGACQWTVVLLNAIIGALA 816

Query: 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI 491
           +HG  E+A++ F  M  EG  PD  T V ++SAC H G++EEG   F ++K+ +GI+PT+
Sbjct: 817 QHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTL 876

Query: 492 KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551
           +H+AC +D+LGRAG+    E  I +     N LVW +LLG C   G+ EL E+ A+++LE
Sbjct: 877 EHYACFVDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILE 936

Query: 552 LEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           L+P   + +V  S+I    G+W D    R  L  Q +K  P  SW+E+
Sbjct: 937 LDPHNSAAHVVLSNIYCATGKWKDADVDRKKLLDQNVKNAPGMSWLEI 984



 Score =  241 bits (616), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 158/493 (32%), Positives = 256/493 (51%), Gaps = 21/493 (4%)

Query: 55  STVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
           + +L+   +S  +  G+  H +    G     FL   L++MY +CG  + A  +F ++++
Sbjct: 29  TALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKMEE 88

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLM-RESSVKPNQFVLTSLVRATTETGDQRCGES 173
            +VV+W A+I+   Q G    A  +F  M  ESS  PN + L +++ A   + D   G S
Sbjct: 89  RNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRS 148

Query: 174 IHAVICKYGFESD----TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF- 228
           IHA+I + G E +    TLVGNA+++MY + G       VF  I  +D VSW A+   + 
Sbjct: 149 IHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFLTIPEKDVVSWTAMAGAYA 208

Query: 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH 288
           Q+       LRIF +MLL+   PN+ TFI  L AC+SL D   G  LH+   +  L  + 
Sbjct: 209 QERRFYPDALRIFREMLLQPLAPNVITFITALGACTSLRD---GTWLHSLLHEAGLGFDP 265

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANK---DLFAYTAIITSYAQAGEAEMALKCFRKM 345
           + G +L++MY K G  E A   F ++A++   DL ++ A+I++  +AG    A+  FR++
Sbjct: 266 LAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRL 325

Query: 346 RLEGIKSNEFTLASCLNGCSPVAT-LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404
           RLEG++ N  TL + LN  +         R  H    ++G+L D+ V  A+++MYAKCG 
Sbjct: 326 RLEGMRPNSVTLITILNALAASGVDFGAARKFHGRIWESGYLRDVVVGNAIISMYAKCGF 385

Query: 405 IDDAEAVFKGSALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
              A  VF+    + D  SWN M+G         K +  F  ML  G  P++++F+ +L+
Sbjct: 386 FSAAWTVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILN 445

Query: 464 ACSHMGLIEEGKKHFSSI---KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLT 520
           ACS+   ++ G+K  S I   ++ Y +  ++     ++ + G+ G   E E    E  L 
Sbjct: 446 ACSNSEALDFGRKIHSLILTRRRDY-VESSVATM--LVSMYGKCGSIAEAELVFKEMPLP 502

Query: 521 PNALV-WENLLGA 532
             +LV W  +LGA
Sbjct: 503 SRSLVTWNVMLGA 515



 Score =  224 bits (572), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 153/479 (31%), Positives = 242/479 (50%), Gaps = 17/479 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLK 59
           +E A  +F  M E NVVSW AL++  A+SG   +   LF +M  +     + ++L  +L 
Sbjct: 76  LEEAHAIFSKMEERNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLN 135

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDK----FLSCSLVDMYSKCGLADNALKVFYRIKDP 115
             ANS  +  G+ +HAM   LG   +      +  ++++MY+KCG  ++A+ VF  I + 
Sbjct: 136 ACANSRDLAIGRSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFLTIPEK 195

Query: 116 DVVAWGAIITCLDQQ-GCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
           DVV+W A+     Q+     +A +IF  M    + PN     + + A T   D   G  +
Sbjct: 196 DVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTSLRD---GTWL 252

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ---DSVSWNALFSRFQDY 231
           H+++ + G   D L GNAL++MY + G       VF+A+A +   D VSWNA+ S   + 
Sbjct: 253 HSLLHEAGLGFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMISASVEA 312

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKA-CSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
                 + IF ++ L+G +PN  T I IL A  +S  D G  ++ H    +     + VV
Sbjct: 313 GRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASGVDFGAARKFHGRIWESGYLRDVVV 372

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANK-DLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           G +++ MY K G    A   F  +  K D+ ++  ++ +          +  F  M L G
Sbjct: 373 GNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAG 432

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHS-IAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
           I  N+ +  + LN CS    L  GR +HS I  +    ++  V+T LV+MY KCGSI +A
Sbjct: 433 IDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSIAEA 492

Query: 409 EAVFKGSAL--RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC 465
           E VFK   L  R   +WN+M+G Y ++   ++A  A   ML  G +PD ++F  VLS+C
Sbjct: 493 ELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSC 551



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 167/351 (47%), Gaps = 10/351 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ VF  M   +VVSW A+++  AE+ D ++V HLF  M+       KF+L+T L  
Sbjct: 588 LEQARSVFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDT 647

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +S  +  G+++HA    +G   D  +  +L++MYS CG    AL  F  +K  D+V+W
Sbjct: 648 CLDSTTLGLGKIIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSW 707

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +     Q G  +EA  +F  M+   VKP++   ++ +  +  +     G+  H +  +
Sbjct: 708 NIMSAAYAQAGLAKEAVLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHGLAAE 767

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G +SD  V   LV +Y + G++     +F        V  NA+      +   ++ +++
Sbjct: 768 SGLDSDVSVATGLVKLYAKCGKLDEAISLFRGACQWTVVLLNAIIGALAQHGFSEEAVKM 827

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDV-----GFGKQLHAHTIKHSLDGNHVVGTSLV 295
           F++M  +G +P++ T + I+ AC     V      F        I  +L+         V
Sbjct: 828 FWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHY----ACFV 883

Query: 296 DMYDKSGCLEDAGVAFDSLANKD-LFAYTAIITSYAQAGEAEMALKCFRKM 345
           D+  ++G LE A      +  +D    +T+++ +    G+AE+  +C +++
Sbjct: 884 DLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRI 934



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 115/219 (52%), Gaps = 6/219 (2%)

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
           +  +L++C   +D+  GK+ H       L+ +  +G  L++MY + G LE+A   F  + 
Sbjct: 28  YTALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKME 87

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS-NEFTLASCLNGCSPVATLANGR 374
            +++ ++TA+I++ AQ+G    A   FR M LE   + N +TL + LN C+    LA GR
Sbjct: 88  ERNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGR 147

Query: 375 LLHSIAVKTG----HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGY 430
            +H++  + G          V  A++ MYAKCGS +DA AVF     +D  SW  M G Y
Sbjct: 148 SIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFLTIPEKDVVSWTAMAGAY 207

Query: 431 VK-HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
            +       AL  FR ML +   P+ ITF+  L AC+ +
Sbjct: 208 AQERRFYPDALRIFREMLLQPLAPNVITFITALGACTSL 246


>gi|302799994|ref|XP_002981755.1| hypothetical protein SELMODRAFT_115083 [Selaginella moellendorffii]
 gi|300150587|gb|EFJ17237.1| hypothetical protein SELMODRAFT_115083 [Selaginella moellendorffii]
          Length = 673

 Score =  321 bits (823), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 178/555 (32%), Positives = 300/555 (54%), Gaps = 10/555 (1%)

Query: 56  TVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP 115
           ++++  AN   ++AG+ +HA  +R G   ++FL  SLV+MY KC    +A  VF  +   
Sbjct: 15  SLIRRCANPHSLEAGRSIHAHILRHGYGGERFLLNSLVEMYCKCDSLRDATAVFELVARE 74

Query: 116 DVV-AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
            +   W  +I    Q+G  +E+  ++  M    VKPN   L S++ A     D + G  I
Sbjct: 75  RIAFPWNILIAANAQRGQSRESIALYRRMSCEGVKPNAITLVSVLGACANLEDLKTGREI 134

Query: 175 HAVICKYG--------FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS 226
           H      G           D ++  ALV+MY   G V+    VFE I  +D  +WNA+ +
Sbjct: 135 HRSHVLGGRSRPYERPMPVDAVMATALVTMYGRCGSVADARAVFEGICGRDLAAWNAMVA 194

Query: 227 RFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDG 286
            +       Q + +  +M ++G +P   TF+ +L  C ++  +   + +HAH +   L+ 
Sbjct: 195 AYSRNGQMAQAVLVLRRMAVEGVRPGEGTFVGMLSWCCTVGALDEARSIHAHILATGLES 254

Query: 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR 346
              VGT+LV MY + G L  A  AF  + +KD+ A+ A+I +YAQ+G +  +++ +  M 
Sbjct: 255 RPTVGTTLVSMYGRCGSLGGAVCAFQRIRDKDIVAWNAMIAAYAQSGHSRDSIRIYHVMD 314

Query: 347 LEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSID 406
           LEG++ ++ TL   L+ CS +A  +  RL+H+  V TG  LD+ + TALV  YA+ G + 
Sbjct: 315 LEGVRVDKVTLIGVLDACSSLALTSKTRLVHARIVDTGVELDVVLGTALVNAYARGGHLV 374

Query: 407 DAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
           DA+ VF     R+ A+W+ M+  Y + G  +++LE +R M  +G  P+ IT+V +L AC+
Sbjct: 375 DADLVFAEMEERNVATWSAMVAAYAQTGHPDRSLEMYREMQLQGLRPNYITYVSILFACN 434

Query: 467 HMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVW 526
           H GL++ G  +F+S+ + YGI    +H +C++D+LGR+G+  E E  +           W
Sbjct: 435 HAGLLDHGLDYFASMGRDYGIESCEEHCSCIVDLLGRSGRLDEAEALMASVPYRLGISAW 494

Query: 527 ENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQ 586
             LLGAC  HG++E   + A +  ++E    + YV  S++ A  G W++ S VR L+++ 
Sbjct: 495 MCLLGACRTHGDVERGARVARRAFQVESGEVAPYVALSNMYAGHGMWDEVSRVRQLMANT 554

Query: 587 GIKKEPSCSWIEVDG 601
            + K    S++E+DG
Sbjct: 555 -LDKSTGKSFVEIDG 568



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 165/354 (46%), Gaps = 24/354 (6%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF+ +   ++ +WNA++  Y+ +G   + + +   M     +  + +   +L     
Sbjct: 174 ARAVFEGICGRDLAAWNAMVAAYSRNGQMAQAVLVLRRMAVEGVRPGEGTFVGMLSWCCT 233

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G +   + +HA  +  G      +  +LV MY +CG    A+  F RI+D D+VAW A+
Sbjct: 234 VGALDEARSIHAHILATGLESRPTVGTTLVSMYGRCGSLGGAVCAFQRIRDKDIVAWNAM 293

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q G  +++ +I+++M    V+ ++  L  ++ A +          +HA I   G 
Sbjct: 294 IAAYAQSGHSRDSIRIYHVMDLEGVRVDKVTLIGVLDACSSLALTSKTRLVHARIVDTGV 353

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E D ++G ALV+ Y   G +     VF  +  ++  +W+A+ + +     PD+ L ++ +
Sbjct: 354 ELDVVLGTALVNAYARGGHLVDADLVFAEMEERNVATWSAMVAAYAQTGHPDRSLEMYRE 413

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG------------ 291
           M L+G +PN  T++ IL AC+           HA  + H LD    +G            
Sbjct: 414 MQLQGLRPNYITYVSILFACN-----------HAGLLDHGLDYFASMGRDYGIESCEEHC 462

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANK-DLFAYTAIITSYAQAGEAEMALKCFRK 344
           + +VD+  +SG L++A     S+  +  + A+  ++ +    G+ E   +  R+
Sbjct: 463 SCIVDLLGRSGRLDEAEALMASVPYRLGISAWMCLLGACRTHGDVERGARVARR 516


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 171/486 (35%), Positives = 264/486 (54%), Gaps = 3/486 (0%)

Query: 116 DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH 175
           ++V+W A+I+ L Q     EA + F  MR     P QF  +S +RA    G    G+ +H
Sbjct: 5   NLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMH 64

Query: 176 AVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD 235
            +  K+G  S+  VG+ L  MY + G +    +VFE +  +D VSW A+   +      +
Sbjct: 65  CLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFE 124

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
           + L  F +M+ +    +       L AC +L    FG+ +H+  +K   + +  VG +L 
Sbjct: 125 EALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALT 184

Query: 296 DMYDKSGCLEDAGVAF--DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           DMY K+G +E A   F  DS   +++ +YT +I  Y +  + E  L  F ++R +GI+ N
Sbjct: 185 DMYSKAGDMESASNVFGIDSEC-RNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPN 243

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
           EFT +S +  C+  A L  G  LH+  +K     D FVS+ LV MY KCG ++ A   F 
Sbjct: 244 EFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFD 303

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
                   +WN ++  + +HGLG+ A++ F  M+D G  P+ ITF+ +L+ CSH GL+EE
Sbjct: 304 EIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEE 363

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           G  +F S+ K YG+ P  +H++C+ID+LGRAG+  E + FI      PNA  W + LGAC
Sbjct: 364 GLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGAC 423

Query: 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPS 593
             HG+ E+ +  AEKL++LEPK     V  S+I A + +W D   VR  +    +KK P 
Sbjct: 424 RIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPG 483

Query: 594 CSWIEV 599
            SW++V
Sbjct: 484 YSWVDV 489



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 122/364 (33%), Positives = 201/364 (55%), Gaps = 1/364 (0%)

Query: 11  MPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAG 70
           MP+ N+VSW A+++G +++    + +  FC M+   +  ++F+ S+ ++  A+ G I+ G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 71  QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
           + +H +A++ G   + F+  +L DMYSKCG   +A KVF  +   D V+W A+I    + 
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 131 GCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVG 190
           G  +EA   F  M +  V  +Q VL S + A       + G S+H+ + K GFESD  VG
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVG 180

Query: 191 NALVSMYMENGRVSYGSRVFEAIAH-QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
           NAL  MY + G +   S VF   +  ++ VS+  L   + + E  ++GL +F ++  +G 
Sbjct: 181 NALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGI 240

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
           +PN  TF  ++KAC++ + +  G QLHA  +K + D +  V + LVDMY K G LE A  
Sbjct: 241 EPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQ 300

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369
           AFD + +    A+ ++++ + Q G  + A+K F +M   G+K N  T  S L GCS    
Sbjct: 301 AFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGL 360

Query: 370 LANG 373
           +  G
Sbjct: 361 VEEG 364



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 176/365 (48%), Gaps = 14/365 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A +VF+ MP  + VSW A+++GY++ G+ ++ +  F  M D E    +  L + L     
Sbjct: 95  ACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGA 154

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD-PDVVAWGA 122
               K G+ VH+  ++LG   D F+  +L DMYSK G  ++A  VF    +  +VV++  
Sbjct: 155 LKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTC 214

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I    +    ++   +F  +R   ++PN+F  +SL++A         G  +HA + K  
Sbjct: 215 LIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKIN 274

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F+ D  V + LV MY + G +    + F+ I     ++WN+L S F  +      ++IF 
Sbjct: 275 FDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFE 334

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV------GTSLVD 296
           +M+ +G KPN  TFI +L  CS    V  G         +S+D  + V       + ++D
Sbjct: 335 RMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYF-----YSMDKTYGVVPGEEHYSCVID 389

Query: 297 MYDKSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMA-LKCFRKMRLEGIKSNE 354
           +  ++G L++A    + +    + F + + + +    G+ EM  L   + ++LE   S  
Sbjct: 390 LLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGA 449

Query: 355 FTLAS 359
             L S
Sbjct: 450 LVLLS 454



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 138/293 (47%), Gaps = 12/293 (4%)

Query: 314 LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG 373
           +  ++L ++TA+I+  +Q  +   A++ F  MR+ G    +F  +S +  C+ + ++  G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 374 RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKH 433
           + +H +A+K G   ++FV + L  MY+KCG++ DA  VF+    +D  SW  MI GY K 
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 434 GLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKH 493
           G  E+AL AF+ M+DE    D+      L AC  +   + G+   SS+ K+ G    I  
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKL-GFESDIFV 179

Query: 494 FACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD--EKDAEKLLE 551
              + D+  +AG      N         N + +      C   G +E +  EK     +E
Sbjct: 180 GNALTDMYSKAGDMESASNVFGIDSECRNVVSY-----TCLIDGYVETEQIEKGLSVFVE 234

Query: 552 LEPK-MESN-YVFPSDIS--ATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           L  + +E N + F S I   A Q      + + A +      ++P  S I VD
Sbjct: 235 LRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVD 287


>gi|147770185|emb|CAN69881.1| hypothetical protein VITISV_024112 [Vitis vinifera]
          Length = 734

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 174/582 (29%), Positives = 298/582 (51%)

Query: 20  NALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIR 79
           N  L   ++ G  ++       M D +   +  S   + +       +  G+++H    R
Sbjct: 56  NLHLVSLSKQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRR 115

Query: 80  LGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKI 139
                   +   L+ MY  CG   +  KVF  +   ++V+W  +I+   + G  ++A ++
Sbjct: 116 TVKNPSGSIENCLLRMYCDCGSXIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRL 175

Query: 140 FNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYME 199
           F+ M+ S ++PN  V  SL+++         G+ +H+ + +    ++  V  A+ +MY+ 
Sbjct: 176 FSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQMHSHVIRAQLNANITVETAICNMYVR 235

Query: 200 NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVI 259
            G +     VF+ +  Q++V+W  L   +   +  +  L +F +M ++G + +   F ++
Sbjct: 236 CGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIV 295

Query: 260 LKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL 319
           LK C  L D   GKQ+H+H +K   +    VGT LVD Y K G +E A  +F  ++  + 
Sbjct: 296 LKVCCXLEDWDMGKQIHSHIVKLGXESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPND 355

Query: 320 FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSI 379
            +++A+I+ ++Q+G  E  +K F  +R EG+  N F   S    C+  A L  G   H  
Sbjct: 356 VSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGD 415

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
           A+K G +  ++  +A+V MY+KCG +D A   F+     D  +W  +I GY  HG   +A
Sbjct: 416 AIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEA 475

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMID 499
           L  FR M   G  P+ +TF+ VL+ACSH GL+ E K++  S+ + YG+ PTI H+ CMID
Sbjct: 476 LGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMID 535

Query: 500 ILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESN 559
              RAG   E    I      P+A+ W++LLG C  H +++L +  AE L  L+P   + 
Sbjct: 536 TYSRAGLLXEALELINRMPFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPGDTAG 595

Query: 560 YVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           Y+   ++ +  G+W +   VR L++ + +KKE SCSWI V G
Sbjct: 596 YILLFNLYSAFGKWEEAGHVRKLMAERELKKEVSCSWISVKG 637



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 137/515 (26%), Positives = 245/515 (47%), Gaps = 16/515 (3%)

Query: 5   KRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANS 64
           ++VF  M   N+VSW  +++ YA++G+ +K + LF  M+    + +     ++L+     
Sbjct: 142 QKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGP 201

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
            +++ G+ +H+  IR     +  +  ++ +MY +CG  + A  VF  +   + V W  ++
Sbjct: 202 SFLELGKQMHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLM 261

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
               Q    + A ++F  M    V+ ++FV + +++      D   G+ IH+ I K G E
Sbjct: 262 VGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCXLEDWDMGKQIHSHIVKLGXE 321

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
           S+  VG  LV  Y++ G +    R F  I+  + VSW+AL S F      +  ++IF  +
Sbjct: 322 SEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSL 381

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
             +G   N   +  + +AC++ +++  G Q H   IK  L       +++V MY K G L
Sbjct: 382 RSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRL 441

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
           + A  AF+S+   D  A+TAII+ YA  G A  AL  FR+M+  G++ N  T  + L  C
Sbjct: 442 DYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTAC 501

Query: 365 SPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA-EAVFKGSALRDTAS 422
           S    +A  +  L S++   G    +     ++  Y++ G + +A E + +     D  S
Sbjct: 502 SHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGLLXEALELINRMPFEPDAMS 561

Query: 423 WNMMIGGYVKH---GLGEKALE-AFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           W  ++GG   H    LG+ A E  FR  LD G   D   ++++ +  S  G  EE     
Sbjct: 562 WKSLLGGCWAHCDLKLGKIAAENLFR--LDPG---DTAGYILLFNLYSAFGKWEEA---- 612

Query: 479 SSIKKIYGITPTIKHFAC-MIDILGRAGKFTEIEN 512
             ++K+       K  +C  I + G+  +   + N
Sbjct: 613 GHVRKLMAERELKKEVSCSWISVKGQVHRPVRLLN 647



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/312 (30%), Positives = 152/312 (48%), Gaps = 9/312 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E AK VF  M   N V+W  L+ GY ++   +  + LF  M     +  +F  S VLK 
Sbjct: 239 LEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKV 298

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                    G+ +H+  ++LG   +  +   LVD Y KCG  ++A + F RI +P+ V+W
Sbjct: 299 CCXLEDWDMGKQIHSHIVKLGXESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSW 358

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I+   Q G  ++  KIF  +R   V  N F+ TS+ +A     +   G   H    K
Sbjct: 359 SALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIK 418

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G  S     +A+V+MY + GR+ Y  R FE+I   D+V+W A+ S +  + +  + L  
Sbjct: 419 RGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGF 478

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL-----HAHTIKHSLDGNHVVGTSLV 295
           F +M   G +PN  TFI +L ACS    V   KQ        + +K ++D        ++
Sbjct: 479 FRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDC----MI 534

Query: 296 DMYDKSGCLEDA 307
           D Y ++G L +A
Sbjct: 535 DTYSRAGLLXEA 546



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 138/320 (43%), Gaps = 36/320 (11%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A R F  + E N VSW+AL++G+++SG  +  + +F S++      + F  ++V + 
Sbjct: 340 IESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQA 399

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    +  G   H  AI+ G     +   ++V MYSKCG  D A + F  I +PD VAW
Sbjct: 400 CAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAW 459

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            AII+     G   EA   F  M+   V+PN     +++ A + +G              
Sbjct: 460 TAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSG-------------- 505

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
                  LV  A    Y+ +    YG  V   I H D      +   +       + L +
Sbjct: 506 -------LVAEA--KQYLGSMSRDYG--VKPTIDHYD-----CMIDTYSRAGLLXEALEL 549

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV-DMYD 299
             +M    F+P+  ++  +L  C +  D+  GK    +  +  LD     G  L+ ++Y 
Sbjct: 550 INRM---PFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFR--LDPGDTAGYILLFNLYS 604

Query: 300 KSGCLEDAGVAFDSLANKDL 319
             G  E+AG     +A ++L
Sbjct: 605 AFGKWEEAGHVRKLMAEREL 624


>gi|125597837|gb|EAZ37617.1| hypothetical protein OsJ_21952 [Oryza sativa Japonica Group]
          Length = 615

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 178/553 (32%), Positives = 306/553 (55%), Gaps = 10/553 (1%)

Query: 53  SLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGL-ADNALKVFYR 111
           SL+ VL G    G    G      A R G   D++L+ +L+  Y +      +AL+ F  
Sbjct: 43  SLAAVLLGNRQRGL---GFSFKGRAARAGLLADRYLANALLAFYVRLPRHLPHALRAFDD 99

Query: 112 IKDPDVVAWGAIITCLDQQGCCQEA-AKIFNLMR--ESSVKPNQFVLTSLVRATTETGDQ 168
           +   DVVA  +I+    + G  + A A + +++   +  V PN   L++ V+A     D+
Sbjct: 100 LPRRDVVAHSSILAAFLRAGMPRRALASLRDMLAGADDDVSPNAHALSAAVKACAVLRDR 159

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228
             G  +H  +   GF  D +V ++LV MY          +VFE +   D + + +L S F
Sbjct: 160 NAGACLHGSVLVRGFGDDGVVLSSLVDMYGHVAAPGDARKVFEEMRAPDGICYTSLISAF 219

Query: 229 QDYESPDQGLRIFYQMLL-KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGN 287
              +  ++ +R F  ML+  G +P+ CTF  ++ A  +      G+Q HA  +   L GN
Sbjct: 220 VRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNSKRGSQGRQAHAQVVTRGLCGN 279

Query: 288 HVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL 347
            +V +S +DMY K G + +A   FD +  ++  +  A++  Y Q GE E  +  FR+M  
Sbjct: 280 VIVESSTLDMYAKCGLMVEARKVFDRMQVRNEVSRCALLGGYCQNGEYEKVIALFREMDK 339

Query: 348 EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
           E    + ++L + L  C+ ++++  G+ +H   ++     D+ V +ALV +YAKCG++D 
Sbjct: 340 E--DGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMAGWRDVVVESALVDLYAKCGAVDY 397

Query: 408 AEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
           A +VF+ S +R+T +WN MIGG+ ++G GE+A+  F  M+ EG  PD I+F+ VL ACSH
Sbjct: 398 AYSVFEASTVRNTITWNAMIGGFAQNGHGERAINLFNRMVREGPRPDYISFIGVLFACSH 457

Query: 468 MGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWE 527
            G++E+G+ +F+S+ K YGI P I+H+ CM+D+  R     E E+ I ++    ++ +W 
Sbjct: 458 TGMVEQGRNYFNSMCKDYGIAPGIEHYNCMVDLFSRVELLEEAEDLINKSPFRNDSSLWA 517

Query: 528 NLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQG 587
           ++LGA + H N ++ E+ ++K++ELEP+   +Y+   ++  T GRW D   +R L+ S+ 
Sbjct: 518 DILGASATHSNPDVAERVSKKMMELEPQYHLSYILLENVYRTVGRWEDALEIRRLMESRK 577

Query: 588 IKKEPSCSWIEVD 600
           +KKEP  SW++ +
Sbjct: 578 VKKEPGMSWVDAN 590



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 115/248 (46%), Gaps = 12/248 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSK-FSLSTVLKGFA 62
           A++VF  M   N VS  ALL GY ++G+ +KV+ LF   ++M+K+    +SL TVL+  A
Sbjct: 299 ARKVFDRMQVRNEVSRCALLGGYCQNGEYEKVIALF---REMDKEDGDWYSLGTVLRACA 355

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
               +K G+ +H   +R+    D  +  +LVD+Y+KCG  D A  VF      + + W A
Sbjct: 356 GLSSVKPGKEIHCRFLRMAGWRDVVVESALVDLYAKCGAVDYAYSVFEASTVRNTITWNA 415

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK-Y 181
           +I    Q G  + A  +FN M     +P+      ++ A + TG    G +    +CK Y
Sbjct: 416 MIGGFAQNGHGERAINLFNRMVREGPRPDYISFIGVLFACSHTGMVEQGRNYFNSMCKDY 475

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIA----HQDSVSWNALFSRFQDYESPDQG 237
           G        N +V ++    RV       + I       DS  W  +      + +PD  
Sbjct: 476 GIAPGIEHYNCMVDLF---SRVELLEEAEDLINKSPFRNDSSLWADILGASATHSNPDVA 532

Query: 238 LRIFYQML 245
            R+  +M+
Sbjct: 533 ERVSKKMM 540



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 56/106 (52%), Gaps = 1/106 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  VF++    N ++WNA++ G+A++G G++ ++LF  M     +    S   VL  
Sbjct: 395 VDYAYSVFEASTVRNTITWNAMIGGFAQNGHGERAINLFNRMVREGPRPDYISFIGVLFA 454

Query: 61  FANSGYIKAGQ-VVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNA 105
            +++G ++ G+   ++M    G A        +VD++S+  L + A
Sbjct: 455 CSHTGMVEQGRNYFNSMCKDYGIAPGIEHYNCMVDLFSRVELLEEA 500


>gi|224121686|ref|XP_002318647.1| predicted protein [Populus trichocarpa]
 gi|222859320|gb|EEE96867.1| predicted protein [Populus trichocarpa]
          Length = 744

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 184/604 (30%), Positives = 311/604 (51%), Gaps = 7/604 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKF-SKFSLSTVLKGF 61
           A  +F+ M E + VSWN +++G+ +SGD  K + +F  M K+    + ++ +    L   
Sbjct: 93  AVDMFERMEERDSVSWNTMISGFCQSGDYVKSLVMFRRMVKECGGSYHNRVACLAALSSC 152

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA-- 119
           A+   +  G  +H   ++ G   D+FL  +L++MY KCG   NA  VF RI+D ++V   
Sbjct: 153 ASIKCLTHGLEIHGFLVKKGVDSDEFLVSALIEMYMKCGDIKNAENVFERIRDNELVGRN 212

Query: 120 ---WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
              W  +I       C   A ++F  M E  + P+   +  ++   ++  D   G+ IH 
Sbjct: 213 MAVWNVMILGYVSNECLSLALELFVEMLELGISPDSSTVVVVLVLCSQLLDLAVGKQIHG 272

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
           +I   G + D  VG AL+ MY + G      ++F+   + + V W ++         P++
Sbjct: 273 LILGLGLDDDVRVGTALMEMYFKCGDPETSLQIFKRSQNHNLVMWGSVMLNCAQNGYPNE 332

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            L  F + +L    P+    +  L+ACS LS    G  +H   IK   D +  VG +LVD
Sbjct: 333 ALEFFSEFMLDCGFPDPVILLAALRACSFLSLKPRGMAIHGFAIKMGFDSDVFVGGALVD 392

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
            Y K G +E A   F  L+ +DL ++ A+I+ +AQ   A+ ALK FR M+ + IK N  T
Sbjct: 393 FYGKCGDMEYAQQVFYGLSTRDLVSWNALISGFAQNKCADEALKAFRDMQSKQIKPNTVT 452

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
           +A  L+ C+ ++ +   + +H   ++     +  V+ +L++ YAKCG I  +  VF+   
Sbjct: 453 MACILSVCTHLSVMILCKEVHCYLLRHWFETNALVNNSLISAYAKCGDIHSSRTVFEKLP 512

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
           +R+  +WN ++ G+  HG  ++    F  M +    PD  TF  +LS+CSH G ++ G K
Sbjct: 513 VRNEVTWNSILLGFGMHGRTDEMFATFEKMKEANIKPDHGTFTSLLSSCSHSGKVDAGWK 572

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
           +F+S+ + Y + P ++ + CM+D+LGRAG   +  + I     +P+  +W +LL +C  H
Sbjct: 573 YFNSMMEDYNLEPRVEQYTCMVDLLGRAGNLNQAYDLIMSMPCSPDDRIWGSLLASCKNH 632

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSW 596
           GN +L E  A  + EL+       V  +++    G  N+   VR  +   G+KK+P CSW
Sbjct: 633 GNTKLAEVVANHIFELDASSVGYRVLLANLYEDSGNLNEVFRVRTDIKQMGLKKQPGCSW 692

Query: 597 IEVD 600
           IEVD
Sbjct: 693 IEVD 696



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 146/313 (46%), Gaps = 13/313 (4%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLF------CSMKDMEKKFSKFSLS 55
           E + ++FK     N+V W +++   A++G   + +  F      C   D         L 
Sbjct: 300 ETSLQIFKRSQNHNLVMWGSVMLNCAQNGYPNEALEFFSEFMLDCGFPD------PVILL 353

Query: 56  TVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP 115
             L+  +       G  +H  AI++G   D F+  +LVD Y KCG  + A +VFY +   
Sbjct: 354 AALRACSFLSLKPRGMAIHGFAIKMGFDSDVFVGGALVDFYGKCGDMEYAQQVFYGLSTR 413

Query: 116 DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH 175
           D+V+W A+I+   Q  C  EA K F  M+   +KPN   +  ++   T        + +H
Sbjct: 414 DLVSWNALISGFAQNKCADEALKAFRDMQSKQIKPNTVTMACILSVCTHLSVMILCKEVH 473

Query: 176 AVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD 235
             + ++ FE++ LV N+L+S Y + G +     VFE +  ++ V+WN++   F  +   D
Sbjct: 474 CYLLRHWFETNALVNNSLISAYAKCGDIHSSRTVFEKLPVRNEVTWNSILLGFGMHGRTD 533

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFG-KQLHAHTIKHSLDGNHVVGTSL 294
           +    F +M     KP+  TF  +L +CS    V  G K  ++    ++L+      T +
Sbjct: 534 EMFATFEKMKEANIKPDHGTFTSLLSSCSHSGKVDAGWKYFNSMMEDYNLEPRVEQYTCM 593

Query: 295 VDMYDKSGCLEDA 307
           VD+  ++G L  A
Sbjct: 594 VDLLGRAGNLNQA 606



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 154/311 (49%), Gaps = 10/311 (3%)

Query: 235 DQGLRIFYQMLLKGFKPNMCTFI-VILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
           +  +R++   +  GF      F   ++KA   L DV  GKQ+H H +K     +  V  S
Sbjct: 20  EDAIRVYLDFIECGFPVEEFRFFPCLIKAFGGLYDVNKGKQIHGHLLKFGFLQDIFVKNS 79

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE--GIK 351
           L+ MY K G   +A   F+ +  +D  ++  +I+ + Q+G+   +L  FR+M  E  G  
Sbjct: 80  LLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQSGDYVKSLVMFRRMVKECGGSY 139

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            N     + L+ C+ +  L +G  +H   VK G   D F+ +AL+ MY KCG I +AE V
Sbjct: 140 HNRVACLAALSSCASIKCLTHGLEIHGFLVKKGVDSDEFLVSALIEMYMKCGDIKNAENV 199

Query: 412 F---KGSAL--RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
           F   + + L  R+ A WN+MI GYV +     ALE F  ML+ G  PD  T VVVL  CS
Sbjct: 200 FERIRDNELVGRNMAVWNVMILGYVSNECLSLALELFVEMLELGISPDSSTVVVVLVLCS 259

Query: 467 HMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVW 526
            +  +  GK+    I  + G+   ++    ++++  + G   E    I +     N ++W
Sbjct: 260 QLLDLAVGKQIHGLILGL-GLDDDVRVGTALMEMYFKCGD-PETSLQIFKRSQNHNLVMW 317

Query: 527 ENLLGACSWHG 537
            +++  C+ +G
Sbjct: 318 GSVMLNCAQNG 328



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 87/171 (50%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A++VF  +   ++VSWNAL++G+A++    + +  F  M+  + K +  +++ +L  
Sbjct: 400 MEYAQQVFYGLSTRDLVSWNALISGFAQNKCADEALKAFRDMQSKQIKPNTVTMACILSV 459

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +   +   + VH   +R     +  ++ SL+  Y+KCG   ++  VF ++   + V W
Sbjct: 460 CTHLSVMILCKEVHCYLLRHWFETNALVNNSLISAYAKCGDIHSSRTVFEKLPVRNEVTW 519

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG 171
            +I+      G   E    F  M+E+++KP+    TSL+ + + +G    G
Sbjct: 520 NSILLGFGMHGRTDEMFATFEKMKEANIKPDHGTFTSLLSSCSHSGKVDAG 570



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 99/216 (45%), Gaps = 8/216 (3%)

Query: 318 DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL-NGCSPVATLANGRLL 376
           D+     +I    + G  E A++ +      G    EF    CL      +  +  G+ +
Sbjct: 2   DVSKVNRMIKECTEDGFFEDAIRVYLDFIECGFPVEEFRFFPCLIKAFGGLYDVNKGKQI 61

Query: 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
           H   +K G L D+FV  +L+ MY KCG+  +A  +F+    RD+ SWN MI G+ + G  
Sbjct: 62  HGHLLKFGFLQDIFVKNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQSGDY 121

Query: 437 EKALEAFRMMLDE--GYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKH 493
            K+L  FR M+ E  G   + +  +  LS+C+ +  +  G + H   +KK  G+      
Sbjct: 122 VKSLVMFRRMVKECGGSYHNRVACLAALSSCASIKCLTHGLEIHGFLVKK--GVDSDEFL 179

Query: 494 FACMIDILGRAGKFTEIENFITETKLTPNALVWENL 529
            + +I++  + G     EN     ++  N LV  N+
Sbjct: 180 VSALIEMYMKCGDIKNAENVF--ERIRDNELVGRNM 213


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 185/599 (30%), Positives = 306/599 (51%), Gaps = 21/599 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK-GFA 62
           A+R+F  MPE N+VS+  L+  +A+ GD +    LF  ++    + ++F L+T+LK   A
Sbjct: 115 ARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIA 174

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
                 AG V H+ A +LG   + F+   L+D YS C L  +A  VF  I   D V W A
Sbjct: 175 MDAAGLAGGV-HSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTA 233

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +++C  +  C + A +          +    +  S  R           + IH    K  
Sbjct: 234 MVSCYSENDCPENAFR--------CAQSCSLLAISCAR-----------QGIHGCAIKTL 274

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            +++  VG AL+ MY + G +      FE I + D +  + + SR+      +Q   +F 
Sbjct: 275 NDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFL 334

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +++     PN  +   +L+AC+++  + FGKQ+H H IK   + +  VG +L+D Y K  
Sbjct: 335 RLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCN 394

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            ++ +   F SL + +  ++  I+  ++Q+G  E AL  F +M+   +   + T +S L 
Sbjct: 395 DMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLR 454

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+  A++ +   +H    K+    D  +  +L+  YAKCG I DA  VF+    RD  S
Sbjct: 455 ACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIIS 514

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN +I GY  HG    ALE F  M       ++ITFV +LS C   GL+  G   F S++
Sbjct: 515 WNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMR 574

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
             +GI P+++H+ C++ +LGRAG+  +   FI +    P+A+VW  LL +C  H N+ L 
Sbjct: 575 IDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALG 634

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
              AEK+LE+EP+ E+ YV  S++ A  G  +  + +R  + + G++K P  SW+E+ G
Sbjct: 635 RFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKG 693



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 145/521 (27%), Positives = 251/521 (48%), Gaps = 36/521 (6%)

Query: 52  FSLSTVLKGFANSGYIKAGQVVHAMAIRLGCA--LDKFLSCSLVDMYSKCGLADNALKVF 109
           F+ +  L+G    G  + G+ VH   +R G    LD F +  L++MY K G   +A ++F
Sbjct: 60  FACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLF 119

Query: 110 YRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
            R+ + ++V++  ++    Q+G  + AA +F  +R    + NQFVLT++++         
Sbjct: 120 DRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAG 179

Query: 170 CGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
               +H+   K G + +  VG+ L+  Y     VS    VF  I  +D+V W A+ S + 
Sbjct: 180 LAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYS 239

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
           + + P+   R              C      ++CS L+     + +H   IK   D    
Sbjct: 240 ENDCPENAFR--------------CA-----QSCSLLAISCARQGIHGCAIKTLNDTEPH 280

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           VG +L+DMY K G ++DA +AF+ +   D+   + +I+ YAQ+ + E A + F ++    
Sbjct: 281 VGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSS 340

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           +  NE++L+S L  C+ +  L  G+ +H+ A+K GH  D+FV  AL+  YAKC  +D + 
Sbjct: 341 VLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSL 400

Query: 410 AVFKGSALRDT--ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
            +F  S+LRD    SWN ++ G+ + GLGE+AL  F  M        ++T+  VL AC+ 
Sbjct: 401 KIF--SSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACAS 458

Query: 468 MGLIEE-GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVW 526
              I   G+ H S  K  +     I +   +ID   + G   +    + +  +  + + W
Sbjct: 459 TASIRHAGQIHCSIEKSTFNNDTVIGN--SLIDTYAKCGYIRDALK-VFQHLMERDIISW 515

Query: 527 ENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
             ++   + HG        A   LEL  +M  + V  +DI+
Sbjct: 516 NAIISGYALHGQ-------AADALELFDRMNKSNVESNDIT 549



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 118/228 (51%), Gaps = 2/228 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ + ++F S+ + N VSWN ++ G+++SG G++ + +FC M+  +   ++ + S+VL+ 
Sbjct: 396 MDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRA 455

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A++  I+    +H    +     D  +  SL+D Y+KCG   +ALKVF  + + D+++W
Sbjct: 456 CASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISW 515

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI-HAVIC 179
            AII+     G   +A ++F+ M +S+V+ N     +L+     TG    G S+  ++  
Sbjct: 516 NAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRI 575

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDS-VSWNALFS 226
            +G +        +V +    GR++   +    I    S + W AL S
Sbjct: 576 DHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLS 623



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 2/112 (1%)

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL--LDMFVSTALVAMYAKCGSIDDAEA 410
           + F  A  L GC        GR +H   V+ G +  LD+F +  L+ MY K G +  A  
Sbjct: 58  DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARR 117

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVL 462
           +F     R+  S+  ++  + + G  E A   FR +  EG+  ++     +L
Sbjct: 118 LFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTML 169


>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
          Length = 768

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 188/687 (27%), Positives = 347/687 (50%), Gaps = 96/687 (13%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ ++R+F  MP+ ++ +WNA+L  Y ++ + +    LF  M +     +  S +T++  
Sbjct: 56  IDASRRLFDQMPKRDIYTWNAILGAYCKASELEDAHVLFAEMPER----NIVSWNTLISA 111

Query: 61  FANSGY------IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
              +G       ++ G+  H ++I++G   + ++  +L+ MY+KC    +A++ F  + +
Sbjct: 112 LTRNGACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPE 171

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE-- 172
           P+ V++ A++  L       EA ++F LM  + +  +   L+S++   +  G   CGE  
Sbjct: 172 PNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGG---CGEFG 228

Query: 173 ---------------SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQD 217
                           +H +  K+GFESD  + N+L+ MY +NG +     +F  +    
Sbjct: 229 LHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVS 288

Query: 218 SVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHA 277
            VSWN + + +       + +    +M   GF+P+  T++ +L AC    D+  G+Q+  
Sbjct: 289 VVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFD 348

Query: 278 ----------HTI--KHSLDGNH-----------------------VVGTSLVDMYDKSG 302
                     +TI   +S + NH                       ++ +SL  M    G
Sbjct: 349 GMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEG 408

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKC--------------------- 341
             +   V+  ++   D++  + +I  Y++ G+ EMA +                      
Sbjct: 409 GRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSL 468

Query: 342 ----------FRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFV 391
                     F+KMR +G+  ++F+ A+ L+ C+ +++L+ GR +HS   + G++ D FV
Sbjct: 469 NSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFV 528

Query: 392 STALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGY 451
            +AL+ MY+KCG +D A  VF     ++T +WN MI GY ++G G++A+  +  M+  G 
Sbjct: 529 GSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGE 588

Query: 452 VPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIE 511
            PD ITFV VL+ACSH GL++ G K F+S+++ +G+ P + H+ C+ID LGRAG+  E E
Sbjct: 589 KPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAE 648

Query: 512 NFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQG 571
             I +     + ++WE LL +C  + ++ L  + AE+L  L+P+  + YV  ++I ++ G
Sbjct: 649 VLIDKMPCKYDPIIWEVLLSSCRVYADVSLARRAAEELFHLDPQNSAPYVLLANIYSSLG 708

Query: 572 RWNDFSGVRALLSSQGIKKEPSCSWIE 598
           RW+D   VR L+S   + K+P  SWIE
Sbjct: 709 RWDDAKAVRELMSYNQVVKDPGYSWIE 735



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 122/516 (23%), Positives = 227/516 (43%), Gaps = 62/516 (12%)

Query: 69  AGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLD 128
           AG+++HA  +R   + D FLS  L++ Y+KC   D + ++F ++   D+  W AI+    
Sbjct: 23  AGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYC 82

Query: 129 QQGCCQEAAKIFNLMRESSVKPNQFVLTSLVR--ATTETGDQRCGESIHAVICKYGFESD 186
           +    ++A  +F  M E ++     ++++L R  A     D  CG   H +  K G +++
Sbjct: 83  KASELEDAHVLFAEMPERNIVSWNTLISALTRNGACGALVDVECGRRCHGISIKIGLDNN 142

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             VGNAL+ MY +   +    + F  +   + VS+ A+     D +  ++  R+F  ML 
Sbjct: 143 IYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLR 202

Query: 247 KGFKPNMCTFIVILKACSS--------------LSDVGFGKQLHAHTIKHSLDGNHVVGT 292
                +  +   +L  CS               LS    G+Q+H  TIKH  + +  +  
Sbjct: 203 NRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNN 262

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           SL+DMY K+G ++ A + F ++    + ++  +I  Y Q  ++  A++  ++M+  G + 
Sbjct: 263 SLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEP 322

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
           +E T  + L  C                                    K G I+    +F
Sbjct: 323 DEITYVNMLVAC-----------------------------------IKSGDIEAGRQMF 347

Query: 413 KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE 472
            G +    +SWN ++ GY ++   ++A++ FR M      PD  T  ++LS+ + M L+E
Sbjct: 348 DGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLE 407

Query: 473 EGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLG 531
            G++ H  S K ++     I   + +I +  + GK  E+   I +     + + W +++ 
Sbjct: 408 GGRQVHAVSQKAVF--RTDIYLASGLIGMYSKCGK-VEMAKRIFDRIAELDIVCWNSMMA 464

Query: 532 ACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
             S      L+  D E     + KM    +FPS  S
Sbjct: 465 GLS------LNSLDKEAFTFFK-KMREKGMFPSQFS 493



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 167/344 (48%), Gaps = 18/344 (5%)

Query: 155 LTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA 214
           L SL++   +      G+ IHA + +     DT + N L+  Y +   +    R+F+ + 
Sbjct: 8   LASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMP 67

Query: 215 HQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILK---ACSSLSDVGF 271
            +D  +WNA+   +      +    +F +M  +    +  T I  L    AC +L DV  
Sbjct: 68  KRDIYTWNAILGAYCKASELEDAHVLFAEMPERNI-VSWNTLISALTRNGACGALVDVEC 126

Query: 272 GKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQ 331
           G++ H  +IK  LD N  VG +L+ MY K  C+ DA  AF  +   +  ++TA++   A 
Sbjct: 127 GRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLAD 186

Query: 332 AGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP--------------VATLANGRLLH 377
           + +   A + FR M    I  +  +L+S L  CS               +++  +G+ +H
Sbjct: 187 SDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVH 246

Query: 378 SIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGE 437
            + +K G   D+ ++ +L+ MYAK G++D AE +F         SWN+MI GY +     
Sbjct: 247 CLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSS 306

Query: 438 KALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           KA+E  + M   G+ PDEIT+V +L AC   G IE G++ F  +
Sbjct: 307 KAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGM 350


>gi|225217011|gb|ACN85298.1| EMB2261 putative [Oryza coarctata]
          Length = 621

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 180/537 (33%), Positives = 300/537 (55%), Gaps = 6/537 (1%)

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLA-DNALKVFYRIKDPDVVAWGAIITC 126
           + G  +HA A R G   D++L+ +L+  Y +      +AL+ F  +   DVVA  +I+  
Sbjct: 49  RIGYCLHARAARAGLLADRYLANALLAFYVRLPRHLPHALRAFDDLPRRDVVAHSSILAA 108

Query: 127 LDQQGCCQEAAKIFNLMRESS--VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
             + G  + A      M   +  V PN    ++ V+A     D+  G  +H  I   GF 
Sbjct: 109 FLRAGMPRRALSSLRSMLAGADDVSPNAHAFSAAVKACAVLRDRNAGACLHGSILVRGFG 168

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
            D +V +ALV MY          + FE +   D + + +L S F   +  ++ +R    M
Sbjct: 169 DDDIVLSALVDMYGHAAAPGDARKAFEEMRTPDGICYTSLISAFVRNDWFEEAVRWSRSM 228

Query: 245 L-LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           L L G +P+ CTF  ++ A  +L     G+Q HA  +   L GN +V +S +DMY K   
Sbjct: 229 LMLNGVRPDGCTFGSMMTALGNLKMGNRGRQAHAQVVTRGLCGNVIVESSTLDMYAKCRM 288

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           + +A   FD +  ++  ++ A++  Y Q GE E  +  FR+M  +    + ++L + L  
Sbjct: 289 IVEARKVFDRMQVRNAVSWCALLGGYCQNGEYEKVVALFREM--DKDDDDWYSLGTVLRA 346

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ ++++  G+ +H   ++ G   ++ V +ALV +YAKCG++D A  VF+ S +R+T +W
Sbjct: 347 CAGLSSVNPGKEIHCRFLRMGGWRNVVVESALVDLYAKCGAVDYAYGVFEASIVRNTITW 406

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N MIGG+ ++G GE+A++ F  M+ EG  PD I+FV VL ACSH G++E+G+K+F+S+ K
Sbjct: 407 NAMIGGFAQNGHGERAIDLFDRMVKEGPRPDYISFVGVLFACSHTGMVEQGRKYFNSMSK 466

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            Y ITP I+H+ CM+D+L R     E E+ I ++    ++ +W  +LGA + H N ++ E
Sbjct: 467 DYSITPGIEHYNCMVDLLSRVELLEEAEDLINKSPFRDDSSLWAAILGASATHSNPDVAE 526

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           + A+K +ELEP+   +YV   ++  T GRW D   +R+L+ S+ +KKEP  SWI+V+
Sbjct: 527 RVAKKTMELEPQYHLSYVLLENVYRTVGRWEDALDIRSLMKSRKVKKEPGMSWIDVN 583



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 2/163 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF  M   N VSW ALL GY ++G+ +KV+ LF  M   +  +  +SL TVL+  A 
Sbjct: 292 ARKVFDRMQVRNAVSWCALLGGYCQNGEYEKVVALFREMDKDDDDW--YSLGTVLRACAG 349

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G+ +H   +R+G   +  +  +LVD+Y+KCG  D A  VF      + + W A+
Sbjct: 350 LSSVNPGKEIHCRFLRMGGWRNVVVESALVDLYAKCGAVDYAYGVFEASIVRNTITWNAM 409

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
           I    Q G  + A  +F+ M +   +P+      ++ A + TG
Sbjct: 410 IGGFAQNGHGERAIDLFDRMVKEGPRPDYISFVGVLFACSHTG 452



 Score = 40.4 bits (93), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 40/71 (56%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  VF++    N ++WNA++ G+A++G G++ + LF  M     +    S   VL  
Sbjct: 388 VDYAYGVFEASIVRNTITWNAMIGGFAQNGHGERAIDLFDRMVKEGPRPDYISFVGVLFA 447

Query: 61  FANSGYIKAGQ 71
            +++G ++ G+
Sbjct: 448 CSHTGMVEQGR 458


>gi|357461615|ref|XP_003601089.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490137|gb|AES71340.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 745

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 190/624 (30%), Positives = 323/624 (51%), Gaps = 38/624 (6%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDME-KKFSKFSLSTVLKGFA 62
           A+ +F  MP  N+VSW  +++    S    + + L+  M + + ++ ++F  S VLK   
Sbjct: 57  ARNMFDEMPHRNIVSWTTMVSVLTNSSMPHEALSLYNEMIESKIEQPNQFLYSAVLKACG 116

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCG---------------------- 100
               ++ G++VH    +    +D  L  +L+DMY KCG                      
Sbjct: 117 LVRNVELGKMVHYHIFQAKLDVDIVLMNALLDMYVKCGSLRDAQRVFCEIPCKNATSWNT 176

Query: 101 ---------LADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPN 151
                    L D+A+K+F ++ +PD+V+W +II  L        A +  ++M    +K +
Sbjct: 177 LILGYAKQGLIDDAMKLFDKMPEPDIVSWNSIIAGLVDNAS-SRALRFVSMMHGKGLKMD 235

Query: 152 QFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFE 211
           +F   S+++A   + +   G  IH  I K GFES     +AL+ MY     +S  +++F+
Sbjct: 236 EFTFPSVLKACGCSDELMLGREIHCYIIKSGFESSCYCISALIDMYSSCKLLSEATKIFD 295

Query: 212 AIAHQDSVS-----WNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266
                 SVS     WN++ S         + L +   M   G + +  TF ++LK C + 
Sbjct: 296 QYFRNSSVSESLALWNSMLSGHVVNGDYVEALSMISHMHRSGVRFDFYTFSIVLKICMNF 355

Query: 267 SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
            ++    Q+H   I    + + VVG+ L+D+Y K G + +A   F+ L +KD+ A++++I
Sbjct: 356 DNLSLASQVHGFVITSGYELDCVVGSILIDIYAKQGSINNALRLFERLPDKDVVAWSSLI 415

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL 386
           T  A+ G  ++A   F  M   G++ + F ++  L  CS +A+  +G+ +HS+ +K G+ 
Sbjct: 416 TGCARFGSDKLAFSLFMDMIHLGLQIDHFVISIVLKACSSLASHQHGKQVHSLCLKKGYE 475

Query: 387 LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM 446
            +  V+TAL+ MYAKCG I+DA ++F   +  DT SW  +I G  ++G  E+A+     M
Sbjct: 476 SEGVVTTALIDMYAKCGDIEDALSLFGCLSEIDTMSWTSIIVGCAQNGRAEEAISLLHKM 535

Query: 447 LDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGK 506
           ++ G  P++IT + VL+AC H GL+EE    F+SI+  +G+ P  +H+ CM+DILG+AG+
Sbjct: 536 IESGTKPNKITILGVLTACRHSGLVEEAWDVFNSIETNHGLIPCPEHYNCMVDILGQAGR 595

Query: 507 FTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDI 566
           F E    I+E    P+  +W +LLGAC  + N +L    AE LL   P+  S Y+  S++
Sbjct: 596 FEEAVKLISEMPFKPDKTIWSSLLGACGTYKNRDLANIVAEHLLATSPEDVSVYIMLSNV 655

Query: 567 SATQGRWNDFSGVRALLSSQGIKK 590
            A  G W+  S VR  +   G K+
Sbjct: 656 YAALGMWDSVSKVRETVKKIGKKR 679



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 134/543 (24%), Positives = 249/543 (45%), Gaps = 57/543 (10%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           IK  + +H+  I+ G     F+  +++ +YSKC    +A  +F  +   ++V+W  +++ 
Sbjct: 19  IKNAKSLHSHIIKSGFCNHIFILNNMISVYSKCSSIIDARNMFDEMPHRNIVSWTTMVSV 78

Query: 127 LDQQGCCQEAAKIFNLMRESSV-KPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
           L       EA  ++N M ES + +PNQF+ +++++A     +   G+ +H  I +   + 
Sbjct: 79  LTNSSMPHEALSLYNEMIESKIEQPNQFLYSAVLKACGLVRNVELGKMVHYHIFQAKLDV 138

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALF-------------SRFQDYE 232
           D ++ NAL+ MY++ G +    RVF  I  +++ SWN L                F    
Sbjct: 139 DIVLMNALLDMYVKCGSLRDAQRVFCEIPCKNATSWNTLILGYAKQGLIDDAMKLFDKMP 198

Query: 233 SPD-----------------QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL 275
            PD                 + LR    M  KG K +  TF  +LKAC    ++  G+++
Sbjct: 199 EPDIVSWNSIIAGLVDNASSRALRFVSMMHGKGLKMDEFTFPSVLKACGCSDELMLGREI 258

Query: 276 HAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD-----SLANKDLFAYTAIITSYA 330
           H + IK   + +    ++L+DMY     L +A   FD     S  ++ L  + ++++ + 
Sbjct: 259 HCYIIKSGFESSCYCISALIDMYSSCKLLSEATKIFDQYFRNSSVSESLALWNSMLSGHV 318

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
             G+   AL     M   G++ + +T +  L  C     L+    +H   + +G+ LD  
Sbjct: 319 VNGDYVEALSMISHMHRSGVRFDFYTFSIVLKICMNFDNLSLASQVHGFVITSGYELDCV 378

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
           V + L+ +YAK GSI++A  +F+    +D  +W+ +I G  + G  + A   F  M+  G
Sbjct: 379 VGSILIDIYAKQGSINNALRLFERLPDKDVVAWSSLITGCARFGSDKLAFSLFMDMIHLG 438

Query: 451 YVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIY---GITPTIKHFACMIDILGRAGK 506
              D     +VL ACS +   + GK+ H   +KK Y   G+  T      +ID+  + G 
Sbjct: 439 LQIDHFVISIVLKACSSLASHQHGKQVHSLCLKKGYESEGVVTT-----ALIDMYAKCG- 492

Query: 507 FTEIENFITETKLTP--NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564
             +IE+ ++        + + W +++  C+ +G        AE+ + L  KM  +   P+
Sbjct: 493 --DIEDALSLFGCLSEIDTMSWTSIIVGCAQNGR-------AEEAISLLHKMIESGTKPN 543

Query: 565 DIS 567
            I+
Sbjct: 544 KIT 546



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 106/239 (44%), Gaps = 31/239 (12%)

Query: 258 VILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK 317
           +  + C     +   K LH+H IK     +  +  +++ +Y K   + DA   FD + ++
Sbjct: 8   IAFRYCIRFRSIKNAKSLHSHIIKSGFCNHIFILNNMISVYSKCSSIIDARNMFDEMPHR 67

Query: 318 DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI-KSNEFTLASCLNGCSPVATLANGRLL 376
           ++ ++T +++    +     AL  + +M    I + N+F  ++ L  C  V  +  G+++
Sbjct: 68  NIVSWTTMVSVLTNSSMPHEALSLYNEMIESKIEQPNQFLYSAVLKACGLVRNVELGKMV 127

Query: 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
           H    +    +D+ +  AL+ MY KCGS+ DA+ VF     ++  SWN +I GY K GL 
Sbjct: 128 HYHIFQAKLDVDIVLMNALLDMYVKCGSLRDAQRVFCEIPCKNATSWNTLILGYAKQGLI 187

Query: 437 EKALEAF------------------------------RMMLDEGYVPDEITFVVVLSAC 465
           + A++ F                               MM  +G   DE TF  VL AC
Sbjct: 188 DDAMKLFDKMPEPDIVSWNSIIAGLVDNASSRALRFVSMMHGKGLKMDEFTFPSVLKAC 246



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 9/194 (4%)

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C    ++ N + LHS  +K+G    +F+   ++++Y+KC SI DA  +F     R+  SW
Sbjct: 13  CIRFRSIKNAKSLHSHIIKSGFCNHIFILNNMISVYSKCSSIIDARNMFDEMPHRNIVSW 72

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGY-VPDEITFVVVLSACSHMGLIEEGKK-HFSSI 481
             M+       +  +AL  +  M++     P++  +  VL AC  +  +E GK  H+   
Sbjct: 73  TTMVSVLTNSSMPHEALSLYNEMIESKIEQPNQFLYSAVLKACGLVRNVELGKMVHYHIF 132

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
           +    +   + +   ++D+  + G   + +    E     NA  W  L+   +  G I+ 
Sbjct: 133 QAKLDVDIVLMN--ALLDMYVKCGSLRDAQRVFCEIP-CKNATSWNTLILGYAKQGLID- 188

Query: 542 DEKDAEKLLELEPK 555
              DA KL +  P+
Sbjct: 189 ---DAMKLFDKMPE 199


>gi|296087156|emb|CBI33530.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 188/566 (33%), Positives = 299/566 (52%), Gaps = 12/566 (2%)

Query: 41  SMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCG 100
           ++ D   KF +FS   +L+   ++G ++ G  VH   ++L       +   L+ +Y K G
Sbjct: 51  TIDDHSFKFHQFS--QILQECTDAGDLRTGMSVHTYLVKLNINGFILIWNKLLSLYLKFG 108

Query: 101 LADNALKVFYRIKDPDVVAWGAIITC-LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLV 159
              +A ++F  +   DVV++  +I+  +       +   +++ M++  VKPN      L+
Sbjct: 109 HIHHAHQLFDTMPRRDVVSFNTMISASVRNNYDALDLVGLYSKMKKEDVKPNHITFAGLI 168

Query: 160 RATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSV 219
            A       R     HA   + G  S+  VG++LV  Y +  ++    + F  I   D V
Sbjct: 169 GACDGLIALRLRGIFHAHTVRCGLSSNEFVGSSLVDGYAKQMKLEDAIKAFNEIMELDLV 228

Query: 220 SWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHT 279
           SWN +        S +  +R+F QML    + +  T   I+K CS   D+  G Q H   
Sbjct: 229 SWNIMIDGCARNNSKEHAVRMFSQMLKGNVRVDGFTLTSIIKTCSKPGDLKHGMQFHGSA 288

Query: 280 IKHSLDGNHVVGTSLVDMYDKSGCLEDAGVA-----FDSLANKDLFAYTAIITSYAQAGE 334
           IK  L     +  +L+ MY K     + GVA     F S++  ++ ++TA+I+ + Q  +
Sbjct: 289 IKLGLAHETPIYNALITMYSKC----EKGVASPVKIFGSISEPNIISWTAMISGFMQNEQ 344

Query: 335 AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA 394
            E A+  F++M   G++ N+F+ +S L     +A L  G+ +H+  +K+   LD+ V+ A
Sbjct: 345 NEEAIGLFKEMLRLGVRENDFSFSSILPVYGNLANLEQGKQIHARIIKSWFGLDLSVNNA 404

Query: 395 LVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD 454
           L+ MY+KCGS++DA  VF      D  S   MI  Y +HG G++ALE    M  EG VPD
Sbjct: 405 LIDMYSKCGSLEDAHLVFMKMGKHDVVSCTTMIMSYGQHGKGKEALEILAEMKSEGLVPD 464

Query: 455 EITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFI 514
            +TF+  L ACSH GL+EEG + F  + + + + P  +HFAC++D+LGRAG+  E ENFI
Sbjct: 465 GVTFLGCLYACSHGGLVEEGVRVFKIMIEDHNLKPKREHFACVVDMLGRAGRLNEAENFI 524

Query: 515 TETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWN 574
            E  +  + LVWE LLGAC  HG + L EK A+K++EL+P     YV  ++I A +G W 
Sbjct: 525 DEMGIESDVLVWETLLGACRVHGEMVLGEKSAQKIMELQPGRHGPYVLLANIYAERGSWE 584

Query: 575 DFSGVRALLSSQGIKKEPSCSWIEVD 600
           D   VR  L S G+KK+  CSW+ ++
Sbjct: 585 DKVMVREKLVSHGLKKQVGCSWVALE 610



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 126/446 (28%), Positives = 229/446 (51%), Gaps = 9/446 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESG-DGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           A ++F +MP  +VVS+N +++    +  D   ++ L+  MK  + K +  + + ++    
Sbjct: 113 AHQLFDTMPRRDVVSFNTMISASVRNNYDALDLVGLYSKMKKEDVKPNHITFAGLIGACD 172

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
               ++   + HA  +R G + ++F+  SLVD Y+K    ++A+K F  I + D+V+W  
Sbjct: 173 GLIALRLRGIFHAHTVRCGLSSNEFVGSSLVDGYAKQMKLEDAIKAFNEIMELDLVSWNI 232

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I    +    + A ++F+ M + +V+ + F LTS+++  ++ GD + G   H    K G
Sbjct: 233 MIDGCARNNSKEHAVRMFSQMLKGNVRVDGFTLTSIIKTCSKPGDLKHGMQFHGSAIKLG 292

Query: 183 FESDTLVGNALVSMYM--ENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              +T + NAL++MY   E G V+   ++F +I+  + +SW A+ S F   E  ++ + +
Sbjct: 293 LAHETPIYNALITMYSKCEKG-VASPVKIFGSISEPNIISWTAMISGFMQNEQNEEAIGL 351

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +ML  G + N  +F  IL    +L+++  GKQ+HA  IK     +  V  +L+DMY K
Sbjct: 352 FKEMLRLGVRENDFSFSSILPVYGNLANLEQGKQIHARIIKSWFGLDLSVNNALIDMYSK 411

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G LEDA + F  +   D+ + T +I SY Q G+ + AL+   +M+ EG+  +  T   C
Sbjct: 412 CGSLEDAHLVFMKMGKHDVVSCTTMIMSYGQHGKGKEALEILAEMKSEGLVPDGVTFLGC 471

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA-LVAMYAKCGSIDDAEAVFKGSALR- 418
           L  CS    +  G  +  I ++  +L       A +V M  + G +++AE       +  
Sbjct: 472 LYACSHGGLVEEGVRVFKIMIEDHNLKPKREHFACVVDMLGRAGRLNEAENFIDEMGIES 531

Query: 419 DTASWNMMIGGYVKHG---LGEKALE 441
           D   W  ++G    HG   LGEK+ +
Sbjct: 532 DVLVWETLLGACRVHGEMVLGEKSAQ 557



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 175/362 (48%), Gaps = 6/362 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A + F  + EL++VSWN +++G A +   +  + +F  M     +   F+L++++K 
Sbjct: 212 LEDAIKAFNEIMELDLVSWNIMIDGCARNNSKEHAVRMFSQMLKGNVRVDGFTLTSIIKT 271

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKC--GLADNALKVFYRIKDPDVV 118
            +  G +K G   H  AI+LG A +  +  +L+ MYSKC  G+A + +K+F  I +P+++
Sbjct: 272 CSKPGDLKHGMQFHGSAIKLGLAHETPIYNALITMYSKCEKGVA-SPVKIFGSISEPNII 330

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +W A+I+   Q    +EA  +F  M    V+ N F  +S++       +   G+ IHA I
Sbjct: 331 SWTAMISGFMQNEQNEEAIGLFKEMLRLGVRENDFSFSSILPVYGNLANLEQGKQIHARI 390

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K  F  D  V NAL+ MY + G +     VF  +   D VS   +   +  +    + L
Sbjct: 391 IKSWFGLDLSVNNALIDMYSKCGSLEDAHLVFMKMGKHDVVSCTTMIMSYGQHGKGKEAL 450

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK-HSLDGNHVVGTSLVDM 297
            I  +M  +G  P+  TF+  L ACS    V  G ++    I+ H+L         +VDM
Sbjct: 451 EILAEMKSEGLVPDGVTFLGCLYACSHGGLVEEGVRVFKIMIEDHNLKPKREHFACVVDM 510

Query: 298 YDKSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRK-MRLEGIKSNEF 355
             ++G L +A    D +    D+  +  ++ +    GE  +  K  +K M L+  +   +
Sbjct: 511 LGRAGRLNEAENFIDEMGIESDVLVWETLLGACRVHGEMVLGEKSAQKIMELQPGRHGPY 570

Query: 356 TL 357
            L
Sbjct: 571 VL 572


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  321 bits (822), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 177/599 (29%), Positives = 308/599 (51%), Gaps = 1/599 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A RVF  +     + WN L+N  A+SGD    + LF  M     +   ++ S V K F++
Sbjct: 148 ASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSS 207

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G+ +H   ++ G      +  SLV  Y K    D+A KVF  + + DV++W +I
Sbjct: 208 LRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSI 267

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I      G  ++   +F  M  S ++ +   + S+     ++     G ++H    K  F
Sbjct: 268 INGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACF 327

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             +    N L+ MY + G +     VF  ++ +  VS+ ++ + +       + +++F +
Sbjct: 328 SREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEE 387

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +G  P++ T   +L  C+    +  GK++H    ++ +  +  V  +L+DMY K G 
Sbjct: 388 MEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGS 447

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG-IKSNEFTLASCLN 362
           + +A + F  +  KD+ ++  +I  Y++   A  AL  F  + +E     +E T+A  L 
Sbjct: 448 MREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLP 507

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+ ++    GR +H   ++ G+  D  V+ +LV MYAKCG++  A  +F     +D  S
Sbjct: 508 ACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVS 567

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           W +MI GY  HG G++A+  F  M   G  PDEI+FV +L ACSH GL++EG + F+ ++
Sbjct: 568 WTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMR 627

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
               I PT++H+AC++D+L R G  ++   FI    + P+A +W  LL  C  H +++L 
Sbjct: 628 HECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLA 687

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           E+ AEK+ ELEP+    YV  ++I A   +W +   +R  +  +G++K P CSWIE+ G
Sbjct: 688 ERVAEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKG 746



 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 142/465 (30%), Positives = 242/465 (52%), Gaps = 7/465 (1%)

Query: 15  NVVSWNALLNGYAESGDGQKVMHLF-CSMK-DMEKKFSKFSLSTVLKGFANSGYIKAGQV 72
           +V   N  L  + ESG+ +  + L   S K D++ +    +L +VL+  A+S  +K G+ 
Sbjct: 60  SVTDANTQLRRFCESGNLKNAVKLLHVSGKWDIDPR----TLCSVLQLCADSKSLKDGKE 115

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           V       G  LD  L   L  MY+ CG    A +VF ++K    + W  ++  L + G 
Sbjct: 116 VDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGD 175

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
              +  +F  M  S V+ + +  + + ++ +       GE +H  I K GF     VGN+
Sbjct: 176 FSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNS 235

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           LV+ Y++N RV    +VF+ +  +D +SWN++ + +      ++GL +F QML  G + +
Sbjct: 236 LVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEID 295

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
           + T + +   C+    +  G+ +H   +K           +L+DMY K G L+ A V F 
Sbjct: 296 LATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFR 355

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
            ++ + + +YT++I  YA+ G A  A+K F +M  EGI  + +T+ + LN C+    L  
Sbjct: 356 EMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDE 415

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
           G+ +H    +     D+FVS AL+ MYAKCGS+ +AE VF    ++D  SWN +IGGY K
Sbjct: 416 GKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSK 475

Query: 433 HGLGEKALEAFRMML-DEGYVPDEITFVVVLSACSHMGLIEEGKK 476
           +    +AL  F ++L ++ + PDE T   VL AC+ +   ++G++
Sbjct: 476 NCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGRE 520


>gi|147765322|emb|CAN64903.1| hypothetical protein VITISV_019802 [Vitis vinifera]
          Length = 625

 Score =  321 bits (822), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 181/547 (33%), Positives = 304/547 (55%), Gaps = 14/547 (2%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +K  +  H+  + LG + + FL+  L+  Y+ C    ++  VF  ++  +V  W ++I  
Sbjct: 39  LKLTRQSHSRILSLGLSQNSFLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLING 98

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             +     EA ++FN M  S V P+ F L++L + ++E G    G+SIH    + GF SD
Sbjct: 99  CVKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRTGFVSD 158

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ---DYESPDQGLRIFYQ 243
           T+V N+++SMY + G      +VF+ +  ++S SWN L + +    +    ++      Q
Sbjct: 159 TVVANSIMSMYCKCGNFDESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQ 218

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVG---FGKQLHAHTIKHSL----DGNHVVGTSLVD 296
           M +   +P+  T   +L  C    D+G   +G++LH + +K+ L    D +  +G  L+D
Sbjct: 219 MQMDEVRPDAYTISSLLPLCDG--DMGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLID 276

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR-LEGIKSNEF 355
           MY +S  +      FD +  +++F++TA+I  Y + G+++ AL  FR M+ ++G++ N  
Sbjct: 277 MYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGVEPNRV 336

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
           +L S L  CS  + L +GR +H  AV+     ++ +  AL+ MY+KCGS+D A  VF+  
Sbjct: 337 SLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDD 396

Query: 416 AL-RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
           +L +D  SW+ MI GY  HG G++A+  +  ML  G  PD IT V +LSAC   GL+ EG
Sbjct: 397 SLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACGRSGLVNEG 456

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
              +SS+   YGI PT++  AC++D+LGRAG+     +FI    + P   VW  L+    
Sbjct: 457 LNIYSSVINDYGIEPTLEICACIVDMLGRAGQLDRALDFIKAIPVEPGPSVWGALVSCSI 516

Query: 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSC 594
            HG++E+ E     L++LEPK  SNYV  S++ A+  RW+  + VR ++  + ++K P C
Sbjct: 517 IHGDLEMQELAYRFLIQLEPKNPSNYVSISNLYASSRRWDAVAEVRRMMKDKRLRKVPGC 576

Query: 595 SWIEVDG 601
           SWI ++ 
Sbjct: 577 SWISINN 583



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 123/457 (26%), Positives = 220/457 (48%), Gaps = 14/457 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           ++ VF S+   NV  WN+L+NG  ++    +   LF  M   +     F+LST+ K  + 
Sbjct: 77  SRLVFDSLQHKNVFLWNSLINGCVKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSE 136

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G + +G+ +H  +IR G   D  ++ S++ MY KCG  D + KVF  +   +  +W  +
Sbjct: 137 LGALFSGKSIHGKSIRTGFVSDTVVANSIMSMYCKCGNFDESRKVFDEMTIRNSGSWNVL 196

Query: 124 ITCLDQQGCC---QEAAKIFNLMRESSVKPNQFVLTSLVR-ATTETGDQRCGESIHAVIC 179
           I      G C   +E  +    M+   V+P+ + ++SL+     + G    G  +H  I 
Sbjct: 197 IAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDMGKWDYGRELHCYIV 256

Query: 180 K----YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD 235
           K     G +SD  +G  L+ MY  + +V  G RVF+ +  ++  SW A+ + + +    D
Sbjct: 257 KNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSD 316

Query: 236 QGLRIFYQM-LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
           + L +F  M ++ G +PN  + + +L ACSS S +  G+Q+H   ++  L+    +  +L
Sbjct: 317 EALSLFRDMQVIDGVEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNAL 376

Query: 295 VDMYDKSGCLEDAGVAF--DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           +DMY K G L+ A   F  DSL  KD  +++++I+ Y   G+ + A+  + KM   GI+ 
Sbjct: 377 IDMYSKCGSLDSARRVFEDDSLC-KDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRP 435

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKT-GHLLDMFVSTALVAMYAKCGSIDDAEAV 411
           +  T    L+ C     +  G  ++S  +   G    + +   +V M  + G +D A   
Sbjct: 436 DMITTVGILSACGRSGLVNEGLNIYSSVINDYGIEPTLEICACIVDMLGRAGQLDRALDF 495

Query: 412 FKGSALRDTAS-WNMMIGGYVKHGLGEKALEAFRMML 447
            K   +    S W  ++   + HG  E    A+R ++
Sbjct: 496 IKAIPVEPGPSVWGALVSCSIIHGDLEMQELAYRFLI 532



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 120/231 (51%), Gaps = 10/231 (4%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLKGF 61
           + +RVF  M   NV SW A++NGY E+GD  + + LF  M+ ++  + ++ SL +VL   
Sbjct: 286 VGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGVEPNRVSLVSVLPAC 345

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD----PDV 117
           ++   + +G+ +H  A+R     +  L  +L+DMYSKCG  D+A +VF   +D     D 
Sbjct: 346 SSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVF---EDDSLCKDA 402

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH-A 176
           ++W ++I+     G  QEA  +++ M ++ ++P+      ++ A   +G    G +I+ +
Sbjct: 403 ISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACGRSGLVNEGLNIYSS 462

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS-WNALFS 226
           VI  YG E    +   +V M    G++       +AI  +   S W AL S
Sbjct: 463 VINDYGIEPTLEICACIVDMLGRAGQLDRALDFIKAIPVEPGPSVWGALVS 513


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  321 bits (822), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 177/596 (29%), Positives = 321/596 (53%), Gaps = 1/596 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF  MP  ++VSWN+L++GY+  G  ++ + ++  +K+       F++S+VL  F N
Sbjct: 160 ARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGN 219

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +K GQ +H  A++ G      ++  LV MY K     +A +VF  +   D V++  +
Sbjct: 220 LLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTM 279

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    +    +E+ ++F L      KP+   ++S++RA     D    + I+  + K GF
Sbjct: 280 ICGYLKLEMVEESVRMF-LENLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGF 338

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             ++ V N L+ +Y + G +     VF ++  +D+VSWN++ S +       + +++F  
Sbjct: 339 VLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKM 398

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M++   + +  T+++++   + L+D+ FGK LH++ IK  +  +  V  +L+DMY K G 
Sbjct: 399 MMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGE 458

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           + D+   F S+   D   +  +I++  + G+    L+   +MR   +  +  T    L  
Sbjct: 459 VGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPM 518

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +A    G+ +H   ++ G+  ++ +  AL+ MY+KCG ++++  VF+  + RD  +W
Sbjct: 519 CASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTW 578

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
             MI  Y  +G GEKALE F  M   G VPD + F+ ++ ACSH GL++EG   F  +K 
Sbjct: 579 TGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKT 638

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            Y I P I+H+AC++D+L R+ K ++ E FI    + P+A +W ++L AC   G++E  E
Sbjct: 639 HYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAE 698

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           + + +++EL P      +  S+  A   +W+  S +R  L  + I K P  SWIEV
Sbjct: 699 RVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEV 754



 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 152/561 (27%), Positives = 285/561 (50%), Gaps = 11/561 (1%)

Query: 7   VFKSM-PELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSG 65
           VF+ + P  NV  WN+++  ++++G   + +  +  +++ +    K++  +V+K  A   
Sbjct: 61  VFRRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLF 120

Query: 66  YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT 125
             + G +V+   + +G   D F+  +LVDMYS+ GL   A +VF  +   D+V+W ++I+
Sbjct: 121 DAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLIS 180

Query: 126 CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
                G  +EA +I++ ++ S + P+ F ++S++ A       + G+ +H    K G  S
Sbjct: 181 GYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNS 240

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
             +V N LV+MY++  R +   RVF+ +  +DSVS+N +   +   E  ++ +R+F +  
Sbjct: 241 VVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLEN- 299

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
           L  FKP++ T   +L+AC  L D+   K ++ + +K        V   L+D+Y K G + 
Sbjct: 300 LDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMI 359

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
            A   F+S+  KD  ++ +II+ Y Q+G+   A+K F+ M +   +++  T    ++  +
Sbjct: 360 TARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVST 419

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
            +A L  G+ LHS  +K+G  +D+ VS AL+ MYAKCG + D+  +F      DT +WN 
Sbjct: 420 RLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNT 479

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIY 485
           +I   V+ G     L+    M     VPD  TF+V L  C+ +     GK+    + + +
Sbjct: 480 VISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLR-F 538

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKD 545
           G    ++    +I++  + G   E  + + E     + + W  ++ A   +G       +
Sbjct: 539 GYESELQIGNALIEMYSKCGCL-ENSSRVFERMSRRDVVTWTGMIYAYGMYG-------E 590

Query: 546 AEKLLELEPKMESNYVFPSDI 566
            EK LE    ME + + P  +
Sbjct: 591 GEKALETFADMEKSGIVPDSV 611



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 143/516 (27%), Positives = 253/516 (49%), Gaps = 13/516 (2%)

Query: 50  SKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF 109
           ++ S   + +  ++S  +   + +HA+ I LG     F S  L+D YS      ++L VF
Sbjct: 3   TRVSSPFISRALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVF 62

Query: 110 YRIKDP-DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ 168
            R+    +V  W +II    + G   EA + +  +RES V P+++   S+++A     D 
Sbjct: 63  RRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDA 122

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228
             G+ ++  I   GFESD  VGNALV MY   G ++   +VF+ +  +D VSWN+L S +
Sbjct: 123 EMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGY 182

Query: 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH 288
             +   ++ L I++++      P+  T   +L A  +L  V  G+ LH   +K  ++   
Sbjct: 183 SSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVV 242

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
           VV   LV MY K     DA   FD +  +D  +Y  +I  Y +    E +++ F +  L+
Sbjct: 243 VVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLE-NLD 301

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
             K +  T++S L  C  +  L+  + +++  +K G +L+  V   L+ +YAKCG +  A
Sbjct: 302 QFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITA 361

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
             VF     +DT SWN +I GY++ G   +A++ F+MM+      D IT+++++S  + +
Sbjct: 362 RDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRL 421

Query: 469 GLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWE 527
             ++ GK  H + IK   GI   +     +ID+  + G+  +     +    T + + W 
Sbjct: 422 ADLKFGKGLHSNGIKS--GICIDLSVSNALIDMYAKCGEVGDSLKIFSSMG-TGDTVTWN 478

Query: 528 NLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFP 563
            ++ AC   G       D    L++  +M  + V P
Sbjct: 479 TVISACVRFG-------DFATGLQVTTQMRKSEVVP 507



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 174/350 (49%), Gaps = 8/350 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A+ VF SM   + VSWN++++GY +SGD  + M LF  M  ME++    +   ++  
Sbjct: 358 MITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISV 417

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 +K G+ +H+  I+ G  +D  +S +L+DMY+KCG   ++LK+F  +   D V W
Sbjct: 418 STRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTW 477

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+   + G      ++   MR+S V P+       +        +R G+ IH  + +
Sbjct: 478 NTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLR 537

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +G+ES+  +GNAL+ MY + G +   SRVFE ++ +D V+W  +   +  Y   ++ L  
Sbjct: 538 FGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALET 597

Query: 241 FYQMLLKGFKPNMCTFIVILKAC--SSLSDVGFG--KQLHAHTIKHSLDGNHVVGTSLVD 296
           F  M   G  P+   FI I+ AC  S L D G    +++  H   + +D        +VD
Sbjct: 598 FADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTH---YKIDPMIEHYACVVD 654

Query: 297 MYDKSGCLEDAGVAFDSLANK-DLFAYTAIITSYAQAGEAEMALKCFRKM 345
           +  +S  +  A     ++  K D   + +++ +   +G+ E A +  R++
Sbjct: 655 LLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRI 704


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 195/658 (29%), Positives = 325/658 (49%), Gaps = 62/658 (9%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           + A  V + +     V WN L+  + + G     +++ C M     +   F+L  VLK  
Sbjct: 113 DYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKAC 172

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD---PDVV 118
                 + G   H +    G   + F+  +LV MYS+CG  + A  +F  I      DV+
Sbjct: 173 GELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVI 232

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLM------RESSVKPNQFVLTSLVRATTETGDQRCGE 172
           +W +I++   +      A  +F+ M      + ++ + +   + +++ A          +
Sbjct: 233 SWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTK 292

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNAL---FSRFQ 229
            +H    + G   D  VGNAL+  Y + G +    +VF  +  +D VSWNA+   +S+  
Sbjct: 293 EVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSG 352

Query: 230 DYESP--------------------------------DQGLRIFYQMLLKGFKPNMCTFI 257
           ++E+                                  + L +F QM+  G  PN  T I
Sbjct: 353 NFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTII 412

Query: 258 VILKACSSLSDVGFGKQLHAHTIKHSL----------DGNHVVGTSLVDMYDKSGCLEDA 307
            +L AC+SL     G ++HA+++K+ L          D + +V  +L+DMY K    + A
Sbjct: 413 SVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAA 472

Query: 308 GVAFD--SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE--GIKSNEFTLASCLNG 363
              FD   L  +++  +T +I  +AQ G++  ALK F +M  E  G+  N +T++  L  
Sbjct: 473 RSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMA 532

Query: 364 CSPVATLANGRLLHSIAVKTGHLLD---MFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           C+ +A +  G+ +H+  ++  H  +    FV+  L+ MY+KCG +D A  VF   + +  
Sbjct: 533 CAHLAAIRIGKQIHAYVLRH-HRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSA 591

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SW  M+ GY  HG G +AL+ F  M   G+VPD+ITF+VVL ACSH G++++G  +F S
Sbjct: 592 ISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDS 651

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +   YG+TP  +H+AC ID+L R+G+  +    + +  + P A+VW  LL AC  H N+E
Sbjct: 652 MSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVE 711

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           L E    KL+E+  + + +Y   S+I AT GRW D + +R L+   GIKK P CSW++
Sbjct: 712 LAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQ 769



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 144/541 (26%), Positives = 245/541 (45%), Gaps = 67/541 (12%)

Query: 86  KFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRE 145
           + L   +V  Y  CG  D AL V  R+     V W  +I    +QG    A  +   M  
Sbjct: 96  RSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLR 155

Query: 146 SSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSY 205
           +  +P+ F L  +++A  E    RCG + H +IC  GFES+  + NALV+MY   G +  
Sbjct: 156 AGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEE 215

Query: 206 GSRVFEAIAHQ---DSVSWNALFSRFQDYESPDQGLRIFYQM-LLKGFKP-----NMCTF 256
            S +F+ I  +   D +SWN++ S      +    L +F +M L+   KP     ++ + 
Sbjct: 216 ASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISI 275

Query: 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
           + IL AC SL  V   K++H + I++    +  VG +L+D Y K G +E+A   F+ +  
Sbjct: 276 VNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEF 335

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK------------------------- 351
           KD+ ++ A++  Y+Q+G  E A + F+ MR E I                          
Sbjct: 336 KDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNL 395

Query: 352 ----------SNEFTLASCLNGCSPVATLANGRLLHSIAVKT----------GHLLDMFV 391
                      N  T+ S L+ C+ +   + G  +H+ ++K           G   D+ V
Sbjct: 396 FRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMV 455

Query: 392 STALVAMYAKCGSIDDAEAVFKGSAL--RDTASWNMMIGGYVKHGLGEKALEAFRMMLDE 449
             AL+ MY+KC S   A ++F    L  R+  +W +MIGG+ ++G    AL+ F  M+ E
Sbjct: 456 YNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISE 515

Query: 450 GY--VPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFA-CMIDILGRAGK 506
            Y   P+  T   +L AC+H+  I  GK+  + + + +    +    A C+ID+  + G 
Sbjct: 516 PYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGD 575

Query: 507 FTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDI 566
             +    + ++    +A+ W +++     HG          + L++  KM      P DI
Sbjct: 576 -VDTARHVFDSMSQKSAISWTSMMTGYGMHGR-------GSEALDIFDKMRKAGFVPDDI 627

Query: 567 S 567
           +
Sbjct: 628 T 628



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 134/510 (26%), Positives = 216/510 (42%), Gaps = 62/510 (12%)

Query: 1   MELAKRVFKSMPEL---NVVSWNALLNGYAESGDGQKVMHLFCSM------KDMEKKFSK 51
           +E A  +F  + +    +V+SWN++++ + +S +    + LF  M      K   ++   
Sbjct: 213 LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 272

Query: 52  FSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF-- 109
            S+  +L    +   +   + VH  AIR G   D F+  +L+D Y+KCGL +NA+KVF  
Sbjct: 273 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNM 332

Query: 110 YRIKD--------------------------------P-DVVAWGAIITCLDQQGCCQEA 136
              KD                                P DVV W A+I    Q+GC  EA
Sbjct: 333 MEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEA 392

Query: 137 AKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY----------GFESD 186
             +F  M  S   PN   + S++ A    G    G  IHA   K           G + D
Sbjct: 393 LNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDED 452

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIA--HQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
            +V NAL+ MY +         +F+ I    ++ V+W  +      Y   +  L++F +M
Sbjct: 453 LMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEM 512

Query: 245 LLK--GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL--DGNHVVGTSLVDMYDK 300
           + +  G  PN  T   IL AC+ L+ +  GKQ+HA+ ++H       + V   L+DMY K
Sbjct: 513 ISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSK 572

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G ++ A   FDS++ K   ++T+++T Y   G    AL  F KMR  G   ++ T    
Sbjct: 573 CGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVV 632

Query: 361 LNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
           L  CS    +  G     S++   G           + + A+ G +D A    K   +  
Sbjct: 633 LYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEP 692

Query: 420 TA-SWNMMIGGYVKHGLGEKALEAFRMMLD 448
           TA  W  ++     H   E A  A   +++
Sbjct: 693 TAVVWVALLSACRVHSNVELAEHALNKLVE 722



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/422 (25%), Positives = 178/422 (42%), Gaps = 58/422 (13%)

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F S   +G  +V+ Y+  G   Y   V E +    +V WN L          D  + +  
Sbjct: 92  FISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSC 151

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +ML  G +P+  T   +LKAC  L     G   H     +  + N  +  +LV MY + G
Sbjct: 152 RMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCG 211

Query: 303 CLEDAGVAFDSLANK---DLFAYTAIITSYAQAGEAEMALKCFRKMRL------EGIKSN 353
            LE+A + FD +  +   D+ ++ +I++++ ++  A  AL  F KM L         +S+
Sbjct: 212 SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSD 271

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
             ++ + L  C  +  +   + +H  A++ G   D+FV  AL+  YAKCG +++A  VF 
Sbjct: 272 IISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFN 331

Query: 414 GSALRDTASWNMM-----------------------------------IGGYVKHGLGEK 438
               +D  SWN M                                   I GY + G   +
Sbjct: 332 MMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHE 391

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIY--------GITP 489
           AL  FR M+  G +P+ +T + VLSAC+ +G   +G + H  S+K           G   
Sbjct: 392 ALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDE 451

Query: 490 TIKHFACMIDILGRAGKFTEIENFITETKLTP-NALVWENLLGACSWHGNIELDEKDAEK 548
            +  +  +ID+  +   F    +   +  L   N + W  ++G  + +G    D  DA K
Sbjct: 452 DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYG----DSNDALK 507

Query: 549 LL 550
           L 
Sbjct: 508 LF 509



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 34/165 (20%), Positives = 70/165 (42%), Gaps = 3/165 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+ VF SM + + +SW +++ GY   G G + + +F  M+         +   VL  
Sbjct: 576 VDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYA 635

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            ++ G +  G     +M+   G           +D+ ++ G  D A +    +  +P  V
Sbjct: 636 CSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAV 695

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPN-QFVLTSLVRAT 162
            W A+++        + A    N + E + + +  + L S + AT
Sbjct: 696 VWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYAT 740


>gi|359492597|ref|XP_002282781.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g04860-like [Vitis vinifera]
          Length = 724

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 190/596 (31%), Positives = 306/596 (51%), Gaps = 6/596 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F+ MP  +VVSWNAL+ GY+ +G     + +F  M        + +L  ++     
Sbjct: 107 AQHLFEEMPRRDVVSWNALICGYSRNGYDYDALEVFVQMLREGFPPCQRTLVGLVPSCGR 166

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              I  G+ +H   I+ G  LD  +  +L  MY+KC     A  +F  I +   V+W  +
Sbjct: 167 PDIIFQGKAIHGFGIKSGLDLDCRVKNALTSMYAKCADLQAAEVLFEEIFEKTEVSWNTM 226

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q G   EA  +F  M++  V+ N   + SL+ A          +S H  + K GF
Sbjct: 227 IGAYGQNGLFDEAMLVFKQMQKERVEVNYVTIISLLSANAHL------DSTHCYVIKTGF 280

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            +D  V  +LV  Y   G +     ++  +  ++ VS  A+ S + +  +    +  F Q
Sbjct: 281 ATDASVITSLVCSYAGCGNIESAGLLYNLMPQRNLVSLTAMISGYAEKGNMGLVVECFTQ 340

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           ML    KP+    + IL   +  + +G G  +HA+ +K  L  + +V   L+ MY K G 
Sbjct: 341 MLQLKMKPDAVAMVSILHGFTDPTFIGSGLGIHAYGLKTGLCADCLVVNGLISMYSKFGD 400

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +E     F  +  K L ++ ++I++  Q G    A++ F +MR+ G   +  T+AS L G
Sbjct: 401 IETVFSLFSEMGEKQLISWNSVISACIQVGRTSDAMELFCQMRMYGHSPDAITIASLLAG 460

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           CS V  L  G  LH+  ++    ++ F+ TALV MY KCG ++ AE VFK       A+W
Sbjct: 461 CSEVGFLQFGERLHNYVLRNNLDMEDFLETALVDMYIKCGRLESAERVFKSIKEPCLATW 520

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N MI GY   G   +AL  +  M ++G  PD ITF+ VLSAC+H GL+ EGK++F S+++
Sbjct: 521 NTMISGYGLSGHEHRALSCYSEMQEQGLKPDRITFLGVLSACTHGGLVWEGKRYFRSMRE 580

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            +G+ P ++H ACM+D+L RAG   E   F+   ++ P++ +W  LL +C  H  ++L E
Sbjct: 581 DFGMIPGLQHNACMVDLLSRAGFLEEAVIFVKNMEVEPDSAIWGALLTSCCIHQELKLGE 640

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
             A++LL L+      YV  S++ A++GRW+D + VR ++   G       S IEV
Sbjct: 641 CLAKRLLLLDYYSGGLYVLMSNLYASKGRWDDVARVRKMMKDTGGDGSSGISLIEV 696



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 119/445 (26%), Positives = 206/445 (46%), Gaps = 10/445 (2%)

Query: 87  FLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRES 146
           +L+ + +D Y K G    A  +F  +   DVV+W A+I    + G   +A ++F  M   
Sbjct: 89  YLTTAFLDFYGKLGCIYYAQHLFEEMPRRDVVSWNALICGYSRNGYDYDALEVFVQMLRE 148

Query: 147 SVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYG 206
              P Q  L  LV +         G++IH    K G + D  V NAL SMY +   +   
Sbjct: 149 GFPPCQRTLVGLVPSCGRPDIIFQGKAIHGFGIKSGLDLDCRVKNALTSMYAKCADLQAA 208

Query: 207 SRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266
             +FE I  +  VSWN +   +      D+ + +F QM  +  + N  T I +L A + L
Sbjct: 209 EVLFEEIFEKTEVSWNTMIGAYGQNGLFDEAMLVFKQMQKERVEVNYVTIISLLSANAHL 268

Query: 267 SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
                    H + IK     +  V TSLV  Y   G +E AG+ ++ +  ++L + TA+I
Sbjct: 269 DST------HCYVIKTGFATDASVITSLVCSYAGCGNIESAGLLYNLMPQRNLVSLTAMI 322

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL 386
           + YA+ G   + ++CF +M    +K +   + S L+G +    + +G  +H+  +KTG  
Sbjct: 323 SGYAEKGNMGLVVECFTQMLQLKMKPDAVAMVSILHGFTDPTFIGSGLGIHAYGLKTGLC 382

Query: 387 LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM 446
            D  V   L++MY+K G I+   ++F     +   SWN +I   ++ G    A+E F  M
Sbjct: 383 ADCLVVNGLISMYSKFGDIETVFSLFSEMGEKQLISWNSVISACIQVGRTSDAMELFCQM 442

Query: 447 LDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAG 505
              G+ PD IT   +L+ CS +G ++ G++ H   ++    +   ++    ++D+  + G
Sbjct: 443 RMYGHSPDAITIASLLAGCSEVGFLQFGERLHNYVLRNNLDMEDFLE--TALVDMYIKCG 500

Query: 506 KFTEIENFITETKLTPNALVWENLL 530
           +    E      K  P    W  ++
Sbjct: 501 RLESAERVFKSIK-EPCLATWNTMI 524



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 169/333 (50%), Gaps = 8/333 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  ++  MP+ N+VS  A+++GYAE G+   V+  F  M  ++ K    ++ ++L G
Sbjct: 300 IESAGLLYNLMPQRNLVSLTAMISGYAEKGNMGLVVECFTQMLQLKMKPDAVAMVSILHG 359

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           F +  +I +G  +HA  ++ G   D  +   L+ MYSK G  +    +F  + +  +++W
Sbjct: 360 FTDPTFIGSGLGIHAYGLKTGLCADCLVVNGLISMYSKFGDIETVFSLFSEMGEKQLISW 419

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I+   Q G   +A ++F  MR     P+   + SL+   +E G  + GE +H  + +
Sbjct: 420 NSVISACIQVGRTSDAMELFCQMRMYGHSPDAITIASLLAGCSEVGFLQFGERLHNYVLR 479

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              + +  +  ALV MY++ GR+    RVF++I      +WN + S +       + L  
Sbjct: 480 NNLDMEDFLETALVDMYIKCGRLESAERVFKSIKEPCLATWNTMISGYGLSGHEHRALSC 539

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS----LVD 296
           + +M  +G KP+  TF+ +L AC+    V  GK+ +  +++   D   + G      +VD
Sbjct: 540 YSEMQEQGLKPDRITFLGVLSACTHGGLVWEGKR-YFRSMRE--DFGMIPGLQHNACMVD 596

Query: 297 MYDKSGCLEDAGVAFDSL-ANKDLFAYTAIITS 328
           +  ++G LE+A +   ++    D   + A++TS
Sbjct: 597 LLSRAGFLEEAVIFVKNMEVEPDSAIWGALLTS 629



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 102/365 (27%), Positives = 165/365 (45%), Gaps = 18/365 (4%)

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           I   + K GF     +  A +  Y + G + Y   +FE +  +D VSWNAL   +     
Sbjct: 75  IQTHLRKSGFNQYVYLTTAFLDFYGKLGCIYYAQHLFEEMPRRDVVSWNALICGYSRNGY 134

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
               L +F QML +GF P   T + ++ +C     +  GK +H   IK  LD +  V  +
Sbjct: 135 DYDALEVFVQMLREGFPPCQRTLVGLVPSCGRPDIIFQGKAIHGFGIKSGLDLDCRVKNA 194

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           L  MY K   L+ A V F+ +  K   ++  +I +Y Q G  + A+  F++M+ E ++ N
Sbjct: 195 LTSMYAKCADLQAAEVLFEEIFEKTEVSWNTMIGAYGQNGLFDEAMLVFKQMQKERVEVN 254

Query: 354 EFTLASCLNGCSPVATLANGRL--LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
             T+ S L+        AN  L   H   +KTG   D  V T+LV  YA CG+I+ A  +
Sbjct: 255 YVTIISLLS--------ANAHLDSTHCYVIKTGFATDASVITSLVCSYAGCGNIESAGLL 306

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           +     R+  S   MI GY + G     +E F  ML     PD +  V +L   +    I
Sbjct: 307 YNLMPQRNLVSLTAMISGYAEKGNMGLVVECFTQMLQLKMKPDAVAMVSILHGFTDPTFI 366

Query: 472 EEGKKHFSSIKKIYGITPTIKHFACMID-ILGRAGKFTEIEN-FITETKLTPNALV-WEN 528
             G    +     YG+   +     +++ ++    KF +IE  F   +++    L+ W +
Sbjct: 367 GSGLGIHA-----YGLKTGLCADCLVVNGLISMYSKFGDIETVFSLFSEMGEKQLISWNS 421

Query: 529 LLGAC 533
           ++ AC
Sbjct: 422 VISAC 426



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 101/196 (51%)

Query: 273 KQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQA 332
            Q+  H  K   +    + T+ +D Y K GC+  A   F+ +  +D+ ++ A+I  Y++ 
Sbjct: 73  NQIQTHLRKSGFNQYVYLTTAFLDFYGKLGCIYYAQHLFEEMPRRDVVSWNALICGYSRN 132

Query: 333 GEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS 392
           G    AL+ F +M  EG    + TL   +  C     +  G+ +H   +K+G  LD  V 
Sbjct: 133 GYDYDALEVFVQMLREGFPPCQRTLVGLVPSCGRPDIIFQGKAIHGFGIKSGLDLDCRVK 192

Query: 393 TALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV 452
            AL +MYAKC  +  AE +F+    +   SWN MIG Y ++GL ++A+  F+ M  E   
Sbjct: 193 NALTSMYAKCADLQAAEVLFEEIFEKTEVSWNTMIGAYGQNGLFDEAMLVFKQMQKERVE 252

Query: 453 PDEITFVVVLSACSHM 468
            + +T + +LSA +H+
Sbjct: 253 VNYVTIISLLSANAHL 268


>gi|225216941|gb|ACN85235.1| EMB2261 putative [Oryza minuta]
          Length = 612

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 180/556 (32%), Positives = 308/556 (55%), Gaps = 10/556 (1%)

Query: 50  SKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLA-DNALKV 108
           S  SL+ VL         + G  +HA A R G   +++L+ +L+  Y +      +AL+ 
Sbjct: 37  SPISLAAVLLRHPPP---RLGYCLHARAARAGLLANRYLANALLAFYVRLPRHLPHALRA 93

Query: 109 FYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLM---RESSVKPNQFVLTSLVRATTET 165
           F  +   DVVA  +I+    + G  + A      M    +  V PN   L++ V+A    
Sbjct: 94  FDDLPRRDVVAHSSILAAFLRAGMPRRALASLRAMLTGADDDVSPNAHALSAAVKACAVL 153

Query: 166 GDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALF 225
            D + G  +H  +   GF  D +V ++LV MY          +VFE +   D + + +L 
Sbjct: 154 RDHKAGACLHGSVLVRGFGDDDVVLSSLVDMYGHVAAPGDARKVFEEMRAPDGICYTSLI 213

Query: 226 SRFQDYESPDQGLRIFYQMLL-KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL 284
           S F   +  ++ +R F  ML+  G +P+ CTF  ++ A  +L  V  G+Q HA  +   L
Sbjct: 214 SAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNLKRVSQGRQAHAQVVGRGL 273

Query: 285 DGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRK 344
            GN +V +S +DMY K G + +A   FD +  ++  +  A++  Y Q GE E  +  FR+
Sbjct: 274 CGNVIVESSTLDMYAKCGLMVEARKVFDRMQVRNEVSQCALLGGYCQNGEYEKVITLFRE 333

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404
           M  + +  + ++L + L  C+ ++++  G+ +H   ++ G   D+ V +ALV +YAKCG+
Sbjct: 334 M--DKVDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMGGWRDVVVESALVDLYAKCGA 391

Query: 405 IDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
           +D A +VF+ S +R+T +WN MIGG+ ++G GE+A+  F+ M+ EG  PD I+F+ VL A
Sbjct: 392 VDYAYSVFEASTVRNTITWNAMIGGFTQNGHGEQAINLFKRMVREGPRPDYISFIGVLFA 451

Query: 465 CSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNAL 524
           CSH G++E+G+ +F+S+ + Y I P I+H+ CM+D+L R     E E+ I ++    ++ 
Sbjct: 452 CSHTGMVEQGRNYFNSMCEDYSIAPGIEHYNCMVDLLSRVELLEEAEDLINKSPFRNDSS 511

Query: 525 VWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLS 584
           +W  +LGA + H N ++ E+ A+K++ELEP+   +Y+   ++  T GRW     +R L+ 
Sbjct: 512 LWAAILGASATHSNPDVAERVAKKMMELEPQYHLSYILLENVYRTIGRWGYALEIRRLME 571

Query: 585 SQGIKKEPSCSWIEVD 600
           S+ +KKEP  SWI+ +
Sbjct: 572 SRKVKKEPGMSWIDAN 587



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/457 (22%), Positives = 208/457 (45%), Gaps = 20/457 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM---KDMEKKFSKFSLSTVLKG 60
           A R F  +P  +VV+ +++L  +  +G  ++ +    +M    D +   +  +LS  +K 
Sbjct: 90  ALRAFDDLPRRDVVAHSSILAAFLRAGMPRRALASLRAMLTGADDDVSPNAHALSAAVKA 149

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A     KAG  +H   +  G   D  +  SLVDMY       +A KVF  ++ PD + +
Sbjct: 150 CAVLRDHKAGACLHGSVLVRGFGDDDVVLSSLVDMYGHVAAPGDARKVFEEMRAPDGICY 209

Query: 121 GAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            ++I+   +    +EA + F +++  + V+P+     S++ A         G   HA + 
Sbjct: 210 TSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNLKRVSQGRQAHAQVV 269

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
             G   + +V ++ + MY + G +    +VF+ +  ++ VS  AL   +      ++ + 
Sbjct: 270 GRGLCGNVIVESSTLDMYAKCGLMVEARKVFDRMQVRNEVSQCALLGGYCQNGEYEKVIT 329

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F +M       +  +   +L+AC+ LS V  GK++H   ++     + VV ++LVD+Y 
Sbjct: 330 LFREM--DKVDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMGGWRDVVVESALVDLYA 387

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G ++ A   F++   ++   + A+I  + Q G  E A+  F++M  EG + +  +   
Sbjct: 388 KCGAVDYAYSVFEASTVRNTITWNAMIGGFTQNGHGEQAINLFKRMVREGPRPDYISFIG 447

Query: 360 CLNGCSPVATLANGRLL-------HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
            L  CS    +  GR         +SIA    H         +V + ++   +++AE + 
Sbjct: 448 VLFACSHTGMVEQGRNYFNSMCEDYSIAPGIEHY------NCMVDLLSRVELLEEAEDLI 501

Query: 413 KGSALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
             S  R D++ W  ++G    H   + A    + M++
Sbjct: 502 NKSPFRNDSSLWAAILGASATHSNPDVAERVAKKMME 538



 Score = 40.0 bits (92), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 40/71 (56%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  VF++    N ++WNA++ G+ ++G G++ ++LF  M     +    S   VL  
Sbjct: 392 VDYAYSVFEASTVRNTITWNAMIGGFTQNGHGEQAINLFKRMVREGPRPDYISFIGVLFA 451

Query: 61  FANSGYIKAGQ 71
            +++G ++ G+
Sbjct: 452 CSHTGMVEQGR 462


>gi|297843162|ref|XP_002889462.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335304|gb|EFH65721.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 608

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 174/532 (32%), Positives = 295/532 (55%), Gaps = 7/532 (1%)

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGL-ADNALKVFYRIKDPDVVAWGAIITCLD 128
           G   HA  ++ G   D+ +  SL+ +Y K G       +VF  +   D ++W ++++   
Sbjct: 79  GLQFHAHVVKSGLETDRNVGNSLLSLYFKLGPDMRETRRVFDGMFVKDAISWTSMMSGYV 138

Query: 129 QQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTL 188
                 +A ++F  M    ++PN+F L+S V+A  E G+ R G   H V+  +GFE + +
Sbjct: 139 ASKEHVKALEVFVEMVSFGLQPNKFTLSSAVKACFELGEVRLGRCFHGVVITHGFEWNHV 198

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL-K 247
           + + L  MY  N       RVF+ +   D + W A+ S F   +  ++ L +FY M   K
Sbjct: 199 ISSTLAYMYGVNKEPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGK 258

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           G  P+  TF  +L AC +L  +  GK++H   I + +  N VV +SL+DMY KSG + +A
Sbjct: 259 GLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKSGSVREA 318

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367
              F+ +  K++ +++A++  Y Q GE E A++ FR+M     + + +   + L  C+ +
Sbjct: 319 RQVFNGMPRKNIVSWSALLGGYCQNGEHEKAIEMFREME----EKDLYCFGTVLKACAGL 374

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
           A +  G+ +H   V+ G   ++ V +AL+ +Y K G ID A  V+   ++R+  +WN M+
Sbjct: 375 AAVRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDYASRVYSKMSVRNMITWNAML 434

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGI 487
               ++G GE+A+  F  M+ +G  PD I+F+ VL+AC H GL+EEG+ +F+ + K YGI
Sbjct: 435 SALAQNGRGEEAVSFFNDMVKKGIKPDYISFIAVLTACGHTGLVEEGRNYFALMAKSYGI 494

Query: 488 TPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI-ELDEKDA 546
            P  +H++CMID+LGRAG F E EN +   +   +A +W  LLG C+ + +   + E+ A
Sbjct: 495 KPGTEHYSCMIDLLGRAGLFEEAENLLDRAECRNDASLWGVLLGPCAANTDASSIAERIA 554

Query: 547 EKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           ++++ELEPK   +YV  S++    GR  D   +R L+  +G+ K    SWI+
Sbjct: 555 KRMMELEPKYHMSYVLLSNMYKAIGRHGDALKIRKLMVRRGVAKTVGQSWID 606



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/431 (25%), Positives = 217/431 (50%), Gaps = 7/431 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M   +RVF  M   + +SW ++++GY  S +  K + +F  M     + +KF+LS+ +K 
Sbjct: 112 MRETRRVFDGMFVKDAISWTSMMSGYVASKEHVKALEVFVEMVSFGLQPNKFTLSSAVKA 171

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
               G ++ G+  H + I  G   +  +S +L  MY       +A +VF  + +PDV+ W
Sbjct: 172 CFELGEVRLGRCFHGVVITHGFEWNHVISSTLAYMYGVNKEPVDARRVFDEMPEPDVICW 231

Query: 121 GAIITCLDQQGCCQEAAKIFNLM-RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            A+++   +    +EA  +F  M R   + P+     +++ A       + G+ IH  + 
Sbjct: 232 TAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLI 291

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
             G  S+ +V ++L+ MY ++G V    +VF  +  ++ VSW+AL   +      ++ + 
Sbjct: 292 TNGIGSNVVVESSLLDMYGKSGSVREARQVFNGMPRKNIVSWSALLGGYCQNGEHEKAIE 351

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F +M  K    ++  F  +LKAC+ L+ V  GK++H   ++    GN +V ++L+D+Y 
Sbjct: 352 MFREMEEK----DLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLYG 407

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           KSGC++ A   +  ++ +++  + A++++ AQ G  E A+  F  M  +GIK +  +  +
Sbjct: 408 KSGCIDYASRVYSKMSVRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISFIA 467

Query: 360 CLNGCSPVATLANGRLLHSIAVKT-GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
            L  C     +  GR   ++  K+ G        + ++ +  + G  ++AE +   +  R
Sbjct: 468 VLTACGHTGLVEEGRNYFALMAKSYGIKPGTEHYSCMIDLLGRAGLFEEAENLLDRAECR 527

Query: 419 DTAS-WNMMIG 428
           + AS W +++G
Sbjct: 528 NDASLWGVLLG 538



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 206/413 (49%), Gaps = 10/413 (2%)

Query: 131 GCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVG 190
           G   +A +I N    S +     +  SL++   +      G   HA + K G E+D  VG
Sbjct: 39  GQLTDAIRILNSTHSSEISAKSNLYASLLQTCRKVFSFIHGLQFHAHVVKSGLETDRNVG 98

Query: 191 NALVSMYMENGR-VSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
           N+L+S+Y + G  +    RVF+ +  +D++SW ++ S +   +   + L +F +M+  G 
Sbjct: 99  NSLLSLYFKLGPDMRETRRVFDGMFVKDAISWTSMMSGYVASKEHVKALEVFVEMVSFGL 158

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
           +PN  T    +KAC  L +V  G+  H   I H  + NHV+ ++L  MY  +    DA  
Sbjct: 159 QPNKFTLSSAVKACFELGEVRLGRCFHGVVITHGFEWNHVISSTLAYMYGVNKEPVDARR 218

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFTLASCLNGCSPVA 368
            FD +   D+  +TA+++++++    E AL  F  M R +G+  +  T  + L  C  + 
Sbjct: 219 VFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLR 278

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
            L  G+ +H   +  G   ++ V ++L+ MY K GS+ +A  VF G   ++  SW+ ++G
Sbjct: 279 RLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKSGSVREARQVFNGMPRKNIVSWSALLG 338

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGI 487
           GY ++G  EKA+E FR M ++    D   F  VL AC+ +  +  GK+ H   +++  G 
Sbjct: 339 GYCQNGEHEKAIEMFREMEEK----DLYCFGTVLKACAGLAAVRLGKEIHGQYVRR--GC 392

Query: 488 TPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
              +   + +ID+ G++G         ++  +  N + W  +L A + +G  E
Sbjct: 393 FGNVIVESALIDLYGKSGCIDYASRVYSKMSVR-NMITWNAMLSALAQNGRGE 444


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 187/579 (32%), Positives = 296/579 (51%), Gaps = 39/579 (6%)

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGC-----ALDKFLSCSLVDMYSKCGLADNALKVFYRI 112
           LK  +    I+  + +HA  I+ G      AL K +  S V   S+ G    A+ +F  I
Sbjct: 33  LKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAV---SRSGDISYAISLFNSI 89

Query: 113 KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172
           ++P++  W ++I  L        A   F  M  S V+PN +    L+++  +      G+
Sbjct: 90  EEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGK 149

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVS---------------------------- 204
            IHA + K GF SD  +  +L++MY ++G ++                            
Sbjct: 150 QIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWG 209

Query: 205 ---YGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILK 261
                 ++F+ +  +D VSWNA+ + +       + L +F  M      PN  T + +L 
Sbjct: 210 YMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLS 269

Query: 262 ACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFA 321
           AC+  + +  G  + +      L  N  +  +L+DMY K G L+ A   FD +  +D+ +
Sbjct: 270 ACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVIS 329

Query: 322 YTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAV 381
           +  +I  Y      + AL  FR+M   G++  E T  S L  C+ +  +  G+ +H+   
Sbjct: 330 WNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYIN 389

Query: 382 KTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALE 441
           K  + +   +ST+L+ +YAKCG+I  A  VF G  ++  ASWN MI G   HG  +KA E
Sbjct: 390 KNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFE 449

Query: 442 AFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDIL 501
            F  M  +G  P+EITFV +LSAC H GL++ G++ FSS+ + Y I+P  +H+ CMID+L
Sbjct: 450 LFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLL 509

Query: 502 GRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYV 561
           GRAG F E E+ +   ++ P+  +W +LLGAC  HG +EL E  AE+L ELEP     YV
Sbjct: 510 GRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAYV 569

Query: 562 FPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
             S+I A  G+W+D + +R  L+ +G+KK P C+ IEVD
Sbjct: 570 LLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVD 608



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 137/502 (27%), Positives = 234/502 (46%), Gaps = 53/502 (10%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A  +F S+ E N+  WN+++ G + S      +  F  M     + + ++   +LK  A 
Sbjct: 82  AISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAK 141

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF----YR-------- 111
                 G+ +HA  ++LG   D F+  SL++MY++ G  +NA  VF    +R        
Sbjct: 142 LASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTAL 201

Query: 112 -------------------IKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQ 152
                              +   DVV+W A+I    Q G  +EA  +F  MR+++V PN+
Sbjct: 202 IAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNE 261

Query: 153 FVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEA 212
             + S++ A  ++     G S+ + I   G  S+  + NAL+ MY + G +     +F+ 
Sbjct: 262 STIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDD 321

Query: 213 IAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFG 272
           +  +D +SWN +   +    S  + L +F +ML  G +P   TF+ IL +C+ L  +  G
Sbjct: 322 MLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLG 381

Query: 273 KQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQA 332
           K +HA+  K+    +  + TSL+D+Y K G +  A   FD +  K L ++ A+I   A  
Sbjct: 382 KWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMH 441

Query: 333 GEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHS-------IAVKTGH 385
           G+A+ A + F KM  +GI+ NE T    L+ C     +  G+   S       I+ K+ H
Sbjct: 442 GQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQH 501

Query: 386 LLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DTASWNMMIGGYVKHG---LGEKALE 441
                    ++ +  + G  ++AE++ +   ++ D A W  ++G    HG   LGE  L 
Sbjct: 502 Y------GCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGE--LV 553

Query: 442 AFRMMLDEGYVPDEITFVVVLS 463
           A R+   E   PD     V+LS
Sbjct: 554 AERLFELE---PDNPGAYVLLS 572



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 150/310 (48%), Gaps = 5/310 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A+++F  MP  +VVSWNA++ GYA+ G  ++ + LF  M+      ++ ++ +VL  
Sbjct: 211 MDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSA 270

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A S  +  G  + +     G   +  L  +L+DMYSKCG    A ++F  + + DV++W
Sbjct: 271 CAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISW 330

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I         +EA  +F  M  S V+P +    S++ +    G    G+ IHA I K
Sbjct: 331 NVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINK 390

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
                 T +  +L+ +Y + G +    +VF+ +  +   SWNA+      +   D+   +
Sbjct: 391 NFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFEL 450

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTI---KHSLDGNHVVGTSLVDM 297
           F +M   G +PN  TF+ IL AC     V  G+Q  +  +   K S    H     ++D+
Sbjct: 451 FSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHY--GCMIDL 508

Query: 298 YDKSGCLEDA 307
             ++G  E+A
Sbjct: 509 LGRAGLFEEA 518


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 195/658 (29%), Positives = 325/658 (49%), Gaps = 62/658 (9%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           + A  V + +     V WN L+  + + G     +++ C M     +   F+L  VLK  
Sbjct: 106 DYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKAC 165

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD---PDVV 118
                 + G   H +    G   + F+  +LV MYS+CG  + A  +F  I      DV+
Sbjct: 166 GELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVI 225

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLM------RESSVKPNQFVLTSLVRATTETGDQRCGE 172
           +W +I++   +      A  +F+ M      + ++ + +   + +++ A          +
Sbjct: 226 SWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTK 285

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNAL---FSRFQ 229
            +H    + G   D  VGNAL+  Y + G +    +VF  +  +D VSWNA+   +S+  
Sbjct: 286 EVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSG 345

Query: 230 DYESP--------------------------------DQGLRIFYQMLLKGFKPNMCTFI 257
           ++E+                                  + L +F QM+  G  PN  T I
Sbjct: 346 NFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTII 405

Query: 258 VILKACSSLSDVGFGKQLHAHTIKHSL----------DGNHVVGTSLVDMYDKSGCLEDA 307
            +L AC+SL     G ++HA+++K+ L          D + +V  +L+DMY K    + A
Sbjct: 406 SVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAA 465

Query: 308 GVAFD--SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE--GIKSNEFTLASCLNG 363
              FD   L  +++  +T +I  +AQ G++  ALK F +M  E  G+  N +T++  L  
Sbjct: 466 RSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMA 525

Query: 364 CSPVATLANGRLLHSIAVKTGHLLD---MFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           C+ +A +  G+ +H+  ++  H  +    FV+  L+ MY+KCG +D A  VF   + +  
Sbjct: 526 CAHLAAIRIGKQIHAYVLRH-HRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSA 584

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SW  M+ GY  HG G +AL+ F  M   G+VPD+ITF+VVL ACSH G++++G  +F S
Sbjct: 585 ISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDS 644

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +   YG+TP  +H+AC ID+L R+G+  +    + +  + P A+VW  LL AC  H N+E
Sbjct: 645 MSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVE 704

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           L E    KL+E+  + + +Y   S+I AT GRW D + +R L+   GIKK P CSW++
Sbjct: 705 LAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQ 762



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 144/541 (26%), Positives = 245/541 (45%), Gaps = 67/541 (12%)

Query: 86  KFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRE 145
           + L   +V  Y  CG  D AL V  R+     V W  +I    +QG    A  +   M  
Sbjct: 89  RSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLR 148

Query: 146 SSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSY 205
           +  +P+ F L  +++A  E    RCG + H +IC  GFES+  + NALV+MY   G +  
Sbjct: 149 AGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEE 208

Query: 206 GSRVFEAIAHQ---DSVSWNALFSRFQDYESPDQGLRIFYQM-LLKGFKP-----NMCTF 256
            S +F+ I  +   D +SWN++ S      +    L +F +M L+   KP     ++ + 
Sbjct: 209 ASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISI 268

Query: 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
           + IL AC SL  V   K++H + I++    +  VG +L+D Y K G +E+A   F+ +  
Sbjct: 269 VNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEF 328

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK------------------------- 351
           KD+ ++ A++  Y+Q+G  E A + F+ MR E I                          
Sbjct: 329 KDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNL 388

Query: 352 ----------SNEFTLASCLNGCSPVATLANGRLLHSIAVKT----------GHLLDMFV 391
                      N  T+ S L+ C+ +   + G  +H+ ++K           G   D+ V
Sbjct: 389 FRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMV 448

Query: 392 STALVAMYAKCGSIDDAEAVFKGSAL--RDTASWNMMIGGYVKHGLGEKALEAFRMMLDE 449
             AL+ MY+KC S   A ++F    L  R+  +W +MIGG+ ++G    AL+ F  M+ E
Sbjct: 449 YNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISE 508

Query: 450 GY--VPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFA-CMIDILGRAGK 506
            Y   P+  T   +L AC+H+  I  GK+  + + + +    +    A C+ID+  + G 
Sbjct: 509 PYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGD 568

Query: 507 FTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDI 566
             +    + ++    +A+ W +++     HG          + L++  KM      P DI
Sbjct: 569 -VDTARHVFDSMSQKSAISWTSMMTGYGMHGR-------GSEALDIFDKMRKAGFVPDDI 620

Query: 567 S 567
           +
Sbjct: 621 T 621



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 134/510 (26%), Positives = 216/510 (42%), Gaps = 62/510 (12%)

Query: 1   MELAKRVFKSMPEL---NVVSWNALLNGYAESGDGQKVMHLFCSM------KDMEKKFSK 51
           +E A  +F  + +    +V+SWN++++ + +S +    + LF  M      K   ++   
Sbjct: 206 LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 265

Query: 52  FSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF-- 109
            S+  +L    +   +   + VH  AIR G   D F+  +L+D Y+KCGL +NA+KVF  
Sbjct: 266 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNM 325

Query: 110 YRIKD--------------------------------P-DVVAWGAIITCLDQQGCCQEA 136
              KD                                P DVV W A+I    Q+GC  EA
Sbjct: 326 MEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEA 385

Query: 137 AKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY----------GFESD 186
             +F  M  S   PN   + S++ A    G    G  IHA   K           G + D
Sbjct: 386 LNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDED 445

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIA--HQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
            +V NAL+ MY +         +F+ I    ++ V+W  +      Y   +  L++F +M
Sbjct: 446 LMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEM 505

Query: 245 LLK--GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL--DGNHVVGTSLVDMYDK 300
           + +  G  PN  T   IL AC+ L+ +  GKQ+HA+ ++H       + V   L+DMY K
Sbjct: 506 ISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSK 565

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G ++ A   FDS++ K   ++T+++T Y   G    AL  F KMR  G   ++ T    
Sbjct: 566 CGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVV 625

Query: 361 LNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
           L  CS    +  G     S++   G           + + A+ G +D A    K   +  
Sbjct: 626 LYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEP 685

Query: 420 TA-SWNMMIGGYVKHGLGEKALEAFRMMLD 448
           TA  W  ++     H   E A  A   +++
Sbjct: 686 TAVVWVALLSACRVHSNVELAEHALNKLVE 715



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/422 (25%), Positives = 178/422 (42%), Gaps = 58/422 (13%)

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F S   +G  +V+ Y+  G   Y   V E +    +V WN L          D  + +  
Sbjct: 85  FISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSC 144

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +ML  G +P+  T   +LKAC  L     G   H     +  + N  +  +LV MY + G
Sbjct: 145 RMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCG 204

Query: 303 CLEDAGVAFDSLANK---DLFAYTAIITSYAQAGEAEMALKCFRKMRL------EGIKSN 353
            LE+A + FD +  +   D+ ++ +I++++ ++  A  AL  F KM L         +S+
Sbjct: 205 SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSD 264

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
             ++ + L  C  +  +   + +H  A++ G   D+FV  AL+  YAKCG +++A  VF 
Sbjct: 265 IISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFN 324

Query: 414 GSALRDTASWNMM-----------------------------------IGGYVKHGLGEK 438
               +D  SWN M                                   I GY + G   +
Sbjct: 325 MMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHE 384

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIY--------GITP 489
           AL  FR M+  G +P+ +T + VLSAC+ +G   +G + H  S+K           G   
Sbjct: 385 ALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDE 444

Query: 490 TIKHFACMIDILGRAGKFTEIENFITETKLTP-NALVWENLLGACSWHGNIELDEKDAEK 548
            +  +  +ID+  +   F    +   +  L   N + W  ++G  + +G    D  DA K
Sbjct: 445 DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYG----DSNDALK 500

Query: 549 LL 550
           L 
Sbjct: 501 LF 502



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 34/165 (20%), Positives = 70/165 (42%), Gaps = 3/165 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+ VF SM + + +SW +++ GY   G G + + +F  M+         +   VL  
Sbjct: 569 VDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYA 628

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            ++ G +  G     +M+   G           +D+ ++ G  D A +    +  +P  V
Sbjct: 629 CSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAV 688

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPN-QFVLTSLVRAT 162
            W A+++        + A    N + E + + +  + L S + AT
Sbjct: 689 VWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYAT 733


>gi|357516795|ref|XP_003628686.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355522708|gb|AET03162.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 699

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 186/604 (30%), Positives = 315/604 (52%), Gaps = 18/604 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + LA ++F  MP+ + VSWNA+++GY  + D      L  +M+     F   +  + LKG
Sbjct: 50  LPLALQLFDKMPQRDTVSWNAVISGYVNTADLDSTWQLLNAMRVSGHAFDNHTFGSTLKG 109

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A +  ++ GQ +H++ I++    + F   +L+DMY+KCG  D+AL VF  + + + V+W
Sbjct: 110 VARAQRLELGQQLHSVMIKMRLNENVFSGSALLDMYAKCGRVDDALVVFRYMPECNYVSW 169

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I    + G    A  +        V  +   ++ L+              +H  I K
Sbjct: 170 NTLIAGYSRVGDLDMAFWLMRCQELEGVGIDDGTVSPLLTLLDGVRFYSLVMQLHCKIVK 229

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFE---AIAHQDSVSWNALFSRFQDYESPDQG 237
           +G E+  +V NA+++ Y E   +    RVF     +  +D V+WN++ + +  ++  +  
Sbjct: 230 HGLEAFNIVCNAIITAYSECCSLQDAERVFVGAVTVTCRDLVTWNSMLAAYLLHKKENLA 289

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
             +F +M   GF+P+  ++  ++  CS       G+ LH   IK   + +  V  +L+ M
Sbjct: 290 FDVFIEMQSFGFEPDDYSYTGVISGCSIKEHKSRGESLHGLVIKRGAEVSVPVSNALIAM 349

Query: 298 Y--DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
           Y    + C+EDA   F S+  KD   + +++  Y Q G +E AL+ F ++R   ++ +++
Sbjct: 350 YLGFDNRCMEDALRIFFSMDVKDCCTWNSVLAGYVQVGRSEDALRLFVQVRSLFVEIDDY 409

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
           T ++ +  CS +ATL  G+ +H +++K G   + +V               DA+  F+ +
Sbjct: 410 TFSAVIRCCSDLATLQLGQQVHVLSLKVGFDTNKYVGK-------------DAKKCFETT 456

Query: 416 ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           +  +   WN +I GY +HG G  ALE F +M ++   PD ITFV VL+ACSH GL+EEG+
Sbjct: 457 SNDNAIIWNSIIFGYAQHGQGNIALELFYLMREKKVKPDHITFVAVLTACSHNGLVEEGR 516

Query: 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
           K   S++  +GI   ++H+AC +D+ GRAG   E +  +      P+A+V   LLGAC  
Sbjct: 517 KIIQSMESDFGIPLRMEHYACAVDLYGRAGYLEEGKALVETMPFEPDAMVLRTLLGACRS 576

Query: 536 HGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCS 595
            GNIEL    A+ LL LEP+  S YV  SD+      W++ + V  L+  +G+KK P  S
Sbjct: 577 CGNIELASHVAKMLLVLEPEDHSTYVLLSDLYGRLKMWDEKASVTRLMRERGVKKVPGWS 636

Query: 596 WIEV 599
           WIEV
Sbjct: 637 WIEV 640



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 129/520 (24%), Positives = 232/520 (44%), Gaps = 36/520 (6%)

Query: 71  QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
           Q  H +AI+ G   D + S +L+  YSKC     AL++F ++   D V+W A+I+     
Sbjct: 19  QATHCLAIKSGSISDLYTSNNLITAYSKCAQLPLALQLFDKMPQRDTVSWNAVISGYVNT 78

Query: 131 GCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVG 190
                  ++ N MR S    +     S ++          G+ +H+V+ K     +   G
Sbjct: 79  ADLDSTWQLLNAMRVSGHAFDNHTFGSTLKGVARAQRLELGQQLHSVMIKMRLNENVFSG 138

Query: 191 NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFK 250
           +AL+ MY + GRV     VF  +   + VSWN L + +      D    +     L+G  
Sbjct: 139 SALLDMYAKCGRVDDALVVFRYMPECNYVSWNTLIAGYSRVGDLDMAFWLMRCQELEGVG 198

Query: 251 PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVA 310
            +  T   +L     +       QLH   +KH L+  ++V  +++  Y +   L+DA   
Sbjct: 199 IDDGTVSPLLTLLDGVRFYSLVMQLHCKIVKHGLEAFNIVCNAIITAYSECCSLQDAERV 258

Query: 311 F---DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367
           F    ++  +DL  + +++ +Y    +  +A   F +M+  G + ++++    ++GCS  
Sbjct: 259 FVGAVTVTCRDLVTWNSMLAAYLLHKKENLAFDVFIEMQSFGFEPDDYSYTGVISGCSIK 318

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYA----KCGSIDDAEAVFKGSALRDTASW 423
              + G  LH + +K G  + + VS AL+AMY     +C  ++DA  +F    ++D  +W
Sbjct: 319 EHKSRGESLHGLVIKRGAEVSVPVSNALIAMYLGFDNRC--MEDALRIFFSMDVKDCCTW 376

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSI- 481
           N ++ GYV+ G  E AL  F  +       D+ TF  V+  CS +  ++ G++ H  S+ 
Sbjct: 377 NSVLAGYVQVGRSEDALRLFVQVRSLFVEIDDYTFSAVIRCCSDLATLQLGQQVHVLSLK 436

Query: 482 -------------KKIYGITPTIKHFACMIDILGRA----GKFT-EIENFITETKLTPNA 523
                        KK +  T           I G A    G    E+   + E K+ P+ 
Sbjct: 437 VGFDTNKYVGKDAKKCFETTSNDNAIIWNSIIFGYAQHGQGNIALELFYLMREKKVKPDH 496

Query: 524 LVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFP 563
           + +  +L ACS +G +E    +  K+++    MES++  P
Sbjct: 497 ITFVAVLTACSHNGLVE----EGRKIIQ---SMESDFGIP 529



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 82/175 (46%), Gaps = 6/175 (3%)

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
           TL   +  H +A+K+G + D++ S  L+  Y+KC  +  A  +F     RDT SWN +I 
Sbjct: 14  TLPYLQATHCLAIKSGSISDLYTSNNLITAYSKCAQLPLALQLFDKMPQRDTVSWNAVIS 73

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGIT 488
           GYV     +   +    M   G+  D  TF   L   +    +E G++  S + K+  + 
Sbjct: 74  GYVNTADLDSTWQLLNAMRVSGHAFDNHTFGSTLKGVARAQRLELGQQLHSVMIKMR-LN 132

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTP--NALVWENLLGACSWHGNIEL 541
             +   + ++D+  + G+   +++ +   +  P  N + W  L+   S  G++++
Sbjct: 133 ENVFSGSALLDMYAKCGR---VDDALVVFRYMPECNYVSWNTLIAGYSRVGDLDM 184


>gi|302798571|ref|XP_002981045.1| hypothetical protein SELMODRAFT_334 [Selaginella moellendorffii]
 gi|300151099|gb|EFJ17746.1| hypothetical protein SELMODRAFT_334 [Selaginella moellendorffii]
          Length = 833

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 180/582 (30%), Positives = 306/582 (52%), Gaps = 11/582 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLK 59
           +E A+ +F  MPE NVVSWNA++     +    + + LF  M  +   + ++ S  TVL 
Sbjct: 252 LESAREIFHRMPERNVVSWNAMVASCTLNAHFAEAIELFKRMVAVAMVEPTRVSFITVLN 311

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
                  +  G+ +HAM           ++ +LV MY +CG   +A +VF  ++  D+V+
Sbjct: 312 AVTTPEALAEGRRIHAMIQERQLLSQIEVANALVTMYGRCGGVGDAERVFSAMERRDLVS 371

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W A+I+   Q G  +E   +F+ MR   V P++      + A  E  D   G ++H +  
Sbjct: 372 WNAMISAYAQSGLAREVVNLFHRMRAERVPPDRITFLMALDACAEIRDLDSGRTVHHLSV 431

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSR--------VFEAIAHQDSVSWNALFSRFQDY 231
           + GF S   V NA + +Y      S  S         +FE++A +D +SWN + + +   
Sbjct: 432 ESGFGSCISVANATMHLYSSCSSSSSSSSSLMEVVAGIFESMAARDVISWNTMITGYVQA 491

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS--LDGNHV 289
                 L IF +MLL+G + N  TF+ +L  C S + +  G+ +H   I  +  L  + +
Sbjct: 492 GDSFSALSIFKRMLLEGIRGNQVTFMSLLSVCDSRAFLRQGETIHRRVINQTPELSSDPI 551

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           V  ++V+MY K G L+ A   F+  ++++L ++ ++I++YA  G AE A     +MR EG
Sbjct: 552 VAAAIVNMYGKCGELDTARHLFEDTSHRNLASWNSMISAYALHGRAEQAFDLSERMRREG 611

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           +  +  T  + LN C     + +G+++H+  + +G   D  V+ ALV  Y+KCG++D A 
Sbjct: 612 VLPDRVTFITLLNACVAGGAVRHGKMIHARIIDSGLEKDTVVANALVNFYSKCGNLDTAT 671

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
           ++F     RD  SWN +I G+  +G   +AL++  +M  +G  PD ITF+ +LSA SH G
Sbjct: 672 SLFGALDYRDVVSWNGIIAGFAHNGHAREALKSMWLMQQDGVRPDAITFLTILSASSHAG 731

Query: 470 LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENL 529
            + +G   F S+   + +   ++H+ CMID+LGRAG+  + E F++  +     + W  L
Sbjct: 732 FLRQGGDDFVSMAVDHELERGVEHYGCMIDLLGRAGRIGDAEYFVSAMRDEDKEVSWMTL 791

Query: 530 LGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQG 571
           L AC  HG+ E  ++ A  ++E+ P+  S YV  S++ AT G
Sbjct: 792 LSACEVHGDEERAKRVAGSIVEMNPQHSSAYVALSNLYATCG 833



 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 153/485 (31%), Positives = 249/485 (51%), Gaps = 11/485 (2%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           +LA  VF  M E +++SWN  +   AESGD    + L  SM+       K +  + L   
Sbjct: 152 DLAMAVFSEMRERDLISWNNAIAANAESGDYTFTLALLKSMQLEGMAPDKVTFVSALNAC 211

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
             S  +  G+++HA+ +  G   D  L  +LV MY +CG  ++A ++F+R+ + +VV+W 
Sbjct: 212 IGSRSLSNGRLIHALVLERGMEGDVVLGTALVTMYGRCGCLESAREIFHRMPERNVVSWN 271

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESS-VKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
           A++          EA ++F  M   + V+P +    +++ A T       G  IHA+I +
Sbjct: 272 AMVASCTLNAHFAEAIELFKRMVAVAMVEPTRVSFITVLNAVTTPEALAEGRRIHAMIQE 331

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
               S   V NALV+MY   G V    RVF A+  +D VSWNA+ S +       + + +
Sbjct: 332 RQLLSQIEVANALVTMYGRCGGVGDAERVFSAMERRDLVSWNAMISAYAQSGLAREVVNL 391

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY-- 298
           F++M  +   P+  TF++ L AC+ + D+  G+ +H  +++        V  + + +Y  
Sbjct: 392 FHRMRAERVPPDRITFLMALDACAEIRDLDSGRTVHHLSVESGFGSCISVANATMHLYSS 451

Query: 299 ------DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
                   S  +E     F+S+A +D+ ++  +IT Y QAG++  AL  F++M LEGI+ 
Sbjct: 452 CSSSSSSSSSLMEVVAGIFESMAARDVISWNTMITGYVQAGDSFSALSIFKRMLLEGIRG 511

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL--DMFVSTALVAMYAKCGSIDDAEA 410
           N+ T  S L+ C   A L  G  +H   +     L  D  V+ A+V MY KCG +D A  
Sbjct: 512 NQVTFMSLLSVCDSRAFLRQGETIHRRVINQTPELSSDPIVAAAIVNMYGKCGELDTARH 571

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           +F+ ++ R+ ASWN MI  Y  HG  E+A +    M  EG +PD +TF+ +L+AC   G 
Sbjct: 572 LFEDTSHRNLASWNSMISAYALHGRAEQAFDLSERMRREGVLPDRVTFITLLNACVAGGA 631

Query: 471 IEEGK 475
           +  GK
Sbjct: 632 VRHGK 636



 Score =  238 bits (606), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 150/579 (25%), Positives = 289/579 (49%), Gaps = 21/579 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A++VF  M E +VVSW A+++ YA++G  ++ + LF  M       ++ +   +L+ 
Sbjct: 49  LDEARKVFDRMRERDVVSWTAMISAYAQTGHQRQALDLFTEMAGSSLDPNRVTFLALLEA 108

Query: 61  FANSGYIKAGQVVHAM--AIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
             +  +++ G+ +HA   A++L    D  ++ +++ MY KC  AD A+ VF  +++ D++
Sbjct: 109 CDSPEFLEDGKQIHARVSALQL-LESDVPVANAVMGMYRKCERADLAMAVFSEMRERDLI 167

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +W   I    + G       +   M+   + P++    S + A   +     G  IHA++
Sbjct: 168 SWNNAIAANAESGDYTFTLALLKSMQLEGMAPDKVTFVSALNACIGSRSLSNGRLIHALV 227

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            + G E D ++G ALV+MY   G +     +F  +  ++ VSWNA+ +         + +
Sbjct: 228 LERGMEGDVVLGTALVTMYGRCGCLESAREIFHRMPERNVVSWNAMVASCTLNAHFAEAI 287

Query: 239 RIFYQML-LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
            +F +M+ +   +P   +FI +L A ++   +  G+++HA   +  L     V  +LV M
Sbjct: 288 ELFKRMVAVAMVEPTRVSFITVLNAVTTPEALAEGRRIHAMIQERQLLSQIEVANALVTM 347

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y + G + DA   F ++  +DL ++ A+I++YAQ+G A   +  F +MR E +  +  T 
Sbjct: 348 YGRCGGVGDAERVFSAMERRDLVSWNAMISAYAQSGLAREVVNLFHRMRAERVPPDRITF 407

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS--------IDDAE 409
              L+ C+ +  L +GR +H ++V++G    + V+ A + +Y+ C S        ++   
Sbjct: 408 LMALDACAEIRDLDSGRTVHHLSVESGFGSCISVANATMHLYSSCSSSSSSSSSLMEVVA 467

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
            +F+  A RD  SWN MI GYV+ G    AL  F+ ML EG   +++TF+ +LS C    
Sbjct: 468 GIFESMAARDVISWNTMITGYVQAGDSFSALSIFKRMLLEGIRGNQVTFMSLLSVCDSRA 527

Query: 470 LIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWEN 528
            + +G+  H   I +   ++      A ++++ G+ G+     +   +T    N   W +
Sbjct: 528 FLRQGETIHRRVINQTPELSSDPIVAAAIVNMYGKCGELDTARHLFEDTS-HRNLASWNS 586

Query: 529 LLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           ++ A + HG        AE+  +L  +M    V P  ++
Sbjct: 587 MISAYALHGR-------AEQAFDLSERMRREGVLPDRVT 618



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 135/428 (31%), Positives = 217/428 (50%), Gaps = 7/428 (1%)

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           SG ++ G+ VH    R       F    LV+MY +C   D A KVF R+++ DVV+W A+
Sbjct: 11  SGALEQGRRVHGHVQRHADDRSLFFGNRLVNMYRRCSSLDEARKVFDRMRERDVVSWTAM 70

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG- 182
           I+   Q G  ++A  +F  M  SS+ PN+    +L+ A         G+ IHA +     
Sbjct: 71  ISAYAQTGHQRQALDLFTEMAGSSLDPNRVTFLALLEACDSPEFLEDGKQIHARVSALQL 130

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ--GLRI 240
            ESD  V NA++ MY +  R      VF  +  +D +SWN   +   + ES D    L +
Sbjct: 131 LESDVPVANAVMGMYRKCERADLAMAVFSEMRERDLISWNNAIA--ANAESGDYTFTLAL 188

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
              M L+G  P+  TF+  L AC     +  G+ +HA  ++  ++G+ V+GT+LV MY +
Sbjct: 189 LKSMQLEGMAPDKVTFVSALNACIGSRSLSNGRLIHALVLERGMEGDVVLGTALVTMYGR 248

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFTLAS 359
            GCLE A   F  +  +++ ++ A++ S         A++ F++M  +  ++    +  +
Sbjct: 249 CGCLESAREIFHRMPERNVVSWNAMVASCTLNAHFAEAIELFKRMVAVAMVEPTRVSFIT 308

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            LN  +    LA GR +H++  +   L  + V+ ALV MY +CG + DAE VF     RD
Sbjct: 309 VLNAVTTPEALAEGRRIHAMIQERQLLSQIEVANALVTMYGRCGGVGDAERVFSAMERRD 368

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HF 478
             SWN MI  Y + GL  + +  F  M  E   PD ITF++ L AC+ +  ++ G+  H 
Sbjct: 369 LVSWNAMISAYAQSGLAREVVNLFHRMRAERVPPDRITFLMALDACAEIRDLDSGRTVHH 428

Query: 479 SSIKKIYG 486
            S++  +G
Sbjct: 429 LSVESGFG 436



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 201/412 (48%), Gaps = 11/412 (2%)

Query: 158 LVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQD 217
           L+RA   +G    G  +H  + ++  +     GN LV+MY     +    +VF+ +  +D
Sbjct: 4   LMRACGISGALEQGRRVHGHVQRHADDRSLFFGNRLVNMYRRCSSLDEARKVFDRMRERD 63

Query: 218 SVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHA 277
            VSW A+ S +       Q L +F +M      PN  TF+ +L+AC S   +  GKQ+HA
Sbjct: 64  VVSWTAMISAYAQTGHQRQALDLFTEMAGSSLDPNRVTFLALLEACDSPEFLEDGKQIHA 123

Query: 278 H-TIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAE 336
             +    L+ +  V  +++ MY K    + A   F  +  +DL ++   I + A++G+  
Sbjct: 124 RVSALQLLESDVPVANAVMGMYRKCERADLAMAVFSEMRERDLISWNNAIAANAESGDYT 183

Query: 337 MALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALV 396
             L   + M+LEG+  ++ T  S LN C    +L+NGRL+H++ ++ G   D+ + TALV
Sbjct: 184 FTLALLKSMQLEGMAPDKVTFVSALNACIGSRSLSNGRLIHALVLERGMEGDVVLGTALV 243

Query: 397 AMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV-PDE 455
            MY +CG ++ A  +F     R+  SWN M+     +    +A+E F+ M+    V P  
Sbjct: 244 TMYGRCGCLESAREIFHRMPERNVVSWNAMVASCTLNAHFAEAIELFKRMVAVAMVEPTR 303

Query: 456 ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFIT 515
           ++F+ VL+A +    + EG++  + I++   +   I+    ++ + GR G   + E   +
Sbjct: 304 VSFITVLNAVTTPEALAEGRRIHAMIQE-RQLLSQIEVANALVTMYGRCGGVGDAERVFS 362

Query: 516 ETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
             +   + + W  ++ A +  G        A +++ L  +M +  V P  I+
Sbjct: 363 AME-RRDLVSWNAMISAYAQSGL-------AREVVNLFHRMRAERVPPDRIT 406



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 100/239 (41%), Gaps = 10/239 (4%)

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           A  +  C     L  GR +H    +      +F    LV MY +C S+D+A  VF     
Sbjct: 2   ARLMRACGISGALEQGRRVHGHVQRHADDRSLFFGNRLVNMYRRCSSLDEARKVFDRMRE 61

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK- 476
           RD  SW  MI  Y + G   +AL+ F  M      P+ +TF+ +L AC     +E+GK+ 
Sbjct: 62  RDVVSWTAMISAYAQTGHQRQALDLFTEMAGSSLDPNRVTFLALLEACDSPEFLEDGKQI 121

Query: 477 --HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
               S+++ +    P       M     RA     + + + E  L    + W N + A +
Sbjct: 122 HARVSALQLLESDVPVANAVMGMYRKCERADLAMAVFSEMRERDL----ISWNNAIAANA 177

Query: 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSG--VRALLSSQGIKKE 591
             G+         K ++LE        F S ++A  G  +  +G  + AL+  +G++ +
Sbjct: 178 ESGDYTFTLA-LLKSMQLEGMAPDKVTFVSALNACIGSRSLSNGRLIHALVLERGMEGD 235


>gi|297796091|ref|XP_002865930.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311765|gb|EFH42189.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 878

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 186/599 (31%), Positives = 313/599 (52%), Gaps = 2/599 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F S+   + +SW  +++    +    + +  +  M       ++F+   +L   + 
Sbjct: 177 ARELFSSLQNADTISWTMMISSLVGARKWSEALRFYSEMIKAGVPPNEFTFVKLLGASSF 236

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G ++ G+ +H+  I  G  L+  L  SLV  YS   + ++A++V     + DV  W ++
Sbjct: 237 LG-LEFGKTIHSSIIVRGIPLNVVLKTSLVYFYSHFSIMEDAVRVLNSTGEQDVFLWTSV 295

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           ++   +    +EA   F  MR   + PN F  ++++   +       G+ IH+   K GF
Sbjct: 296 VSGFVRNLRAKEAVGTFLEMRSLGLHPNNFTYSAILSLCSAVRSLDLGKQIHSQTIKVGF 355

Query: 184 ESDTLVGNALVSMYME-NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           E  T VGNALVSMYM+ +      SRVF A+   + VSW  L     D+        +  
Sbjct: 356 EDSTDVGNALVSMYMKCSASEVEASRVFGAMISPNVVSWTTLILGLVDHGFEQDCFGLLM 415

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M+ +  +PN  T   +L+ACS L  +    ++H + ++  +DG  +VG SLVD Y  SG
Sbjct: 416 EMVKREVEPNFVTLSGVLRACSKLKYLRLVLEIHGYLLRRHVDGEMIVGNSLVDAYASSG 475

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            ++ A     S+  +D   YT+++T + + G+ EMAL     M  +GI+ ++ +L   ++
Sbjct: 476 KVDYAWNVTRSMDMRDNITYTSLVTRFNELGKHEMALSVINHMYGDGIRMDQLSLPGFIS 535

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
             + +     G+ LH  +VK+G    + V  +LV MY+KCGS++DA+ VF+  A+ D  S
Sbjct: 536 ASANLGAHETGKHLHCYSVKSGFSGAVSVLNSLVDMYSKCGSLEDAKKVFEEIAMPDVVS 595

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN ++ G    G    AL AF  M  +G  PD +TF+++LSACS   L E G ++F S+K
Sbjct: 596 WNGLVSGLASIGRISSALSAFEEMRMKGTEPDSVTFLILLSACSKGRLTEMGLEYFQSMK 655

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
            I+ + P I+H+  ++ ILGRAG+  E    +    L PNA++++ LL AC +HGN+ L 
Sbjct: 656 TIHNMEPQIEHYVHLVGILGRAGRLEEATGVVETMHLKPNAMIFKTLLRACRYHGNLSLG 715

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           E  A K L L P   + Y+  +D+    G+       R L+S +G+ K+ S S +EV G
Sbjct: 716 EDMANKGLALAPSDPAFYILLADLYDESGKPELAQKTRNLMSEKGLCKKLSKSTVEVQG 774



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 121/409 (29%), Positives = 202/409 (49%), Gaps = 2/409 (0%)

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           F  S   + G  +H   I+ G   +  L  +L+ +Y K     NA K+F  +    V AW
Sbjct: 32  FCESSSSRIGLHIHCPVIKFGLLENLDLCNNLLSLYLKTDGIWNARKLFDEMPQRTVFAW 91

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+   +      A  +F  M  S + PN+F  +S++R+    GD   G  +H  + K
Sbjct: 92  TVMISAFTKSQEFASALSLFEEMMASGIHPNEFTFSSVIRSCAGLGDLSYGGRVHGSVLK 151

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GFE +++VG++L  +Y + G++     +F ++ + D++SW  + S         + LR 
Sbjct: 152 TGFEGNSVVGSSLTDLYSKCGKLKEARELFSSLQNADTISWTMMISSLVGARKWSEALRF 211

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           + +M+  G  PN  TF+ +L A SS   + FGK +H+  I   +  N V+ TSLV  Y  
Sbjct: 212 YSEMIKAGVPPNEFTFVKLLGA-SSFLGLEFGKTIHSSIIVRGIPLNVVLKTSLVYFYSH 270

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
              +EDA    +S   +D+F +T++++ + +   A+ A+  F +MR  G+  N FT ++ 
Sbjct: 271 FSIMEDAVRVLNSTGEQDVFLWTSVVSGFVRNLRAKEAVGTFLEMRSLGLHPNNFTYSAI 330

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSID-DAEAVFKGSALRD 419
           L+ CS V +L  G+ +HS  +K G      V  ALV+MY KC + + +A  VF      +
Sbjct: 331 LSLCSAVRSLDLGKQIHSQTIKVGFEDSTDVGNALVSMYMKCSASEVEASRVFGAMISPN 390

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
             SW  +I G V HG  +        M+     P+ +T   VL ACS +
Sbjct: 391 VVSWTTLILGLVDHGFEQDCFGLLMEMVKREVEPNFVTLSGVLRACSKL 439



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 134/538 (24%), Positives = 251/538 (46%), Gaps = 6/538 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F  MP+  V +W  +++ + +S +    + LF  M       ++F+ S+V++  A 
Sbjct: 76  ARKLFDEMPQRTVFAWTVMISAFTKSQEFASALSLFEEMMASGIHPNEFTFSSVIRSCAG 135

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G +  G  VH   ++ G   +  +  SL D+YSKCG    A ++F  +++ D ++W  +
Sbjct: 136 LGDLSYGGRVHGSVLKTGFEGNSVVGSSLTDLYSKCGKLKEARELFSSLQNADTISWTMM 195

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+ L       EA + ++ M ++ V PN+F    L+ A++  G +  G++IH+ I   G 
Sbjct: 196 ISSLVGARKWSEALRFYSEMIKAGVPPNEFTFVKLLGASSFLGLE-FGKTIHSSIIVRGI 254

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             + ++  +LV  Y     +    RV  +   QD   W ++ S F       + +  F +
Sbjct: 255 PLNVVLKTSLVYFYSHFSIMEDAVRVLNSTGEQDVFLWTSVVSGFVRNLRAKEAVGTFLE 314

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G  PN  T+  IL  CS++  +  GKQ+H+ TIK   + +  VG +LV MY K   
Sbjct: 315 MRSLGLHPNNFTYSAILSLCSAVRSLDLGKQIHSQTIKVGFEDSTDVGNALVSMYMKCSA 374

Query: 304 LE-DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            E +A   F ++ + ++ ++T +I      G  +       +M    ++ N  TL+  L 
Sbjct: 375 SEVEASRVFGAMISPNVVSWTTLILGLVDHGFEQDCFGLLMEMVKREVEPNFVTLSGVLR 434

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            CS +  L     +H   ++     +M V  +LV  YA  G +D A  V +   +RD  +
Sbjct: 435 ACSKLKYLRLVLEIHGYLLRRHVDGEMIVGNSLVDAYASSGKVDYAWNVTRSMDMRDNIT 494

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSI 481
           +  ++  + + G  E AL     M  +G   D+++    +SA +++G  E GK  H  S+
Sbjct: 495 YTSLVTRFNELGKHEMALSVINHMYGDGIRMDQLSLPGFISASANLGAHETGKHLHCYSV 554

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           K   G +  +     ++D+  + G   + +    E  + P+ + W  L+   +  G I
Sbjct: 555 KS--GFSGAVSVLNSLVDMYSKCGSLEDAKKVFEEIAM-PDVVSWNGLVSGLASIGRI 609



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/424 (26%), Positives = 207/424 (48%), Gaps = 4/424 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A RV  S  E +V  W ++++G+  +   ++ +  F  M+ +    + F+ S +L  
Sbjct: 274 MEDAVRVLNSTGEQDVFLWTSVVSGFVRNLRAKEAVGTFLEMRSLGLHPNNFTYSAILSL 333

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLAD-NALKVFYRIKDPDVVA 119
            +    +  G+ +H+  I++G      +  +LV MY KC  ++  A +VF  +  P+VV+
Sbjct: 334 CSAVRSLDLGKQIHSQTIKVGFEDSTDVGNALVSMYMKCSASEVEASRVFGAMISPNVVS 393

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  +I  L   G  Q+   +   M +  V+PN   L+ ++RA ++    R    IH  + 
Sbjct: 394 WTTLILGLVDHGFEQDCFGLLMEMVKREVEPNFVTLSGVLRACSKLKYLRLVLEIHGYLL 453

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           +   + + +VGN+LV  Y  +G+V Y   V  ++  +D++++ +L +RF +    +  L 
Sbjct: 454 RRHVDGEMIVGNSLVDAYASSGKVDYAWNVTRSMDMRDNITYTSLVTRFNELGKHEMALS 513

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +   M   G + +  +    + A ++L     GK LH +++K    G   V  SLVDMY 
Sbjct: 514 VINHMYGDGIRMDQLSLPGFISASANLGAHETGKHLHCYSVKSGFSGAVSVLNSLVDMYS 573

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G LEDA   F+ +A  D+ ++  +++  A  G    AL  F +MR++G + +  T   
Sbjct: 574 KCGSLEDAKKVFEEIAMPDVVSWNGLVSGLASIGRISSALSAFEEMRMKGTEPDSVTFLI 633

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS--TALVAMYAKCGSIDDAEAVFKGSAL 417
            L+ CS    L    L +  ++KT H ++  +     LV +  + G +++A  V +   L
Sbjct: 634 LLSACSK-GRLTEMGLEYFQSMKTIHNMEPQIEHYVHLVGILGRAGRLEEATGVVETMHL 692

Query: 418 RDTA 421
           +  A
Sbjct: 693 KPNA 696



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 110/406 (27%), Positives = 203/406 (50%), Gaps = 10/406 (2%)

Query: 164 ETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNA 223
           E+   R G  IH  + K+G   +  + N L+S+Y++   +    ++F+ +  +   +W  
Sbjct: 34  ESSSSRIGLHIHCPVIKFGLLENLDLCNNLLSLYLKTDGIWNARKLFDEMPQRTVFAWTV 93

Query: 224 LFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS 283
           + S F   +     L +F +M+  G  PN  TF  ++++C+ L D+ +G ++H   +K  
Sbjct: 94  MISAFTKSQEFASALSLFEEMMASGIHPNEFTFSSVIRSCAGLGDLSYGGRVHGSVLKTG 153

Query: 284 LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFR 343
            +GN VVG+SL D+Y K G L++A   F SL N D  ++T +I+S   A +   AL+ + 
Sbjct: 154 FEGNSVVGSSLTDLYSKCGKLKEARELFSSLQNADTISWTMMISSLVGARKWSEALRFYS 213

Query: 344 KMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403
           +M   G+  NEFT    L G S    L  G+ +HS  +  G  L++ + T+LV  Y+   
Sbjct: 214 EMIKAGVPPNEFTFVKLL-GASSFLGLEFGKTIHSSIIVRGIPLNVVLKTSLVYFYSHFS 272

Query: 404 SIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
            ++DA  V   +  +D   W  ++ G+V++   ++A+  F  M   G  P+  T+  +LS
Sbjct: 273 IMEDAVRVLNSTGEQDVFLWTSVVSGFVRNLRAKEAVGTFLEMRSLGLHPNNFTYSAILS 332

Query: 464 ACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIE-NFITETKLTPN 522
            CS +  ++ GK+  S   K+ G   +      ++ +  +    +E+E + +    ++PN
Sbjct: 333 LCSAVRSLDLGKQIHSQTIKV-GFEDSTDVGNALVSMYMKCSA-SEVEASRVFGAMISPN 390

Query: 523 ALVWENLLGACSWHGNIELDEKDAEKLL--ELEPKMESNYVFPSDI 566
            + W  L+     HG     E+D   LL   ++ ++E N+V  S +
Sbjct: 391 VVSWTTLILGLVDHGF----EQDCFGLLMEMVKREVEPNFVTLSGV 432


>gi|15242443|ref|NP_198784.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171206|sp|Q9FK93.1|PP406_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39680; AltName: Full=Protein EMBRYO DEFECTIVE 2744
 gi|9758344|dbj|BAB08900.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007080|gb|AED94463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 185/561 (32%), Positives = 294/561 (52%), Gaps = 4/561 (0%)

Query: 43  KDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAI---RLGCALDKFLSCSLVDMYSKC 99
           K  +  F    L+ +LK  ANS Y++ G+ +HA  I   +   A D +   SL+++Y KC
Sbjct: 23  KSKKTPFPIDRLNELLKVCANSSYLRIGESIHAHLIVTNQSSRAEDAYQINSLINLYVKC 82

Query: 100 GLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRES-SVKPNQFVLTSL 158
                A K+F  + + +VV+W A++      G   E  K+F  M  S   +PN+FV T +
Sbjct: 83  RETVRARKLFDLMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMFFSGESRPNEFVATVV 142

Query: 159 VRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDS 218
            ++ + +G    G+  H    KYG  S   V N LV MY          RV + + + D 
Sbjct: 143 FKSCSNSGRIEEGKQFHGCFLKYGLISHEFVRNTLVYMYSLCSGNGEAIRVLDDLPYCDL 202

Query: 219 VSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAH 278
             +++  S + +  +  +GL +  +   + F  N  T++  L+  S+L D+    Q+H+ 
Sbjct: 203 SVFSSALSGYLECGAFKEGLDVLRKTANEDFVWNNLTYLSSLRLFSNLRDLNLALQVHSR 262

Query: 279 TIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMA 338
            ++   +       +L++MY K G +  A   FD    +++F  T I+ +Y Q    E A
Sbjct: 263 MVRFGFNAEVEACGALINMYGKCGKVLYAQRVFDDTHAQNIFLNTTIMDAYFQDKSFEEA 322

Query: 339 LKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAM 398
           L  F KM  + +  NE+T A  LN  + ++ L  G LLH + +K+G+   + V  ALV M
Sbjct: 323 LNLFSKMDTKEVPPNEYTFAILLNSIAELSLLKQGDLLHGLVLKSGYRNHVMVGNALVNM 382

Query: 399 YAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITF 458
           YAK GSI+DA   F G   RD  +WN MI G   HGLG +ALEAF  M+  G +P+ ITF
Sbjct: 383 YAKSGSIEDARKAFSGMTFRDIVTWNTMISGCSHHGLGREALEAFDRMIFTGEIPNRITF 442

Query: 459 VVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK 518
           + VL ACSH+G +E+G  +F+ + K + + P I+H+ C++ +L +AG F + E+F+    
Sbjct: 443 IGVLQACSHIGFVEQGLHYFNQLMKKFDVQPDIQHYTCIVGLLSKAGMFKDAEDFMRTAP 502

Query: 519 LTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSG 578
           +  + + W  LL AC    N  L +K AE  +E  P     YV  S+I A    W   + 
Sbjct: 503 IEWDVVAWRTLLNACYVRRNYRLGKKVAEYAIEKYPNDSGVYVLLSNIHAKSREWEGVAK 562

Query: 579 VRALLSSQGIKKEPSCSWIEV 599
           VR+L++++G+KKEP  SWI +
Sbjct: 563 VRSLMNNRGVKKEPGVSWIGI 583



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 126/446 (28%), Positives = 215/446 (48%), Gaps = 10/446 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLKGFA 62
           A+++F  MPE NVVSW A++ GY  SG   +V+ LF SM    E + ++F  + V K  +
Sbjct: 88  ARKLFDLMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMFFSGESRPNEFVATVVFKSCS 147

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           NSG I+ G+  H   ++ G    +F+  +LV MYS C     A++V   +   D+  + +
Sbjct: 148 NSGRIEEGKQFHGCFLKYGLISHEFVRNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFSS 207

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
            ++   + G  +E   +           N     S +R  +   D      +H+ + ++G
Sbjct: 208 ALSGYLECGAFKEGLDVLRKTANEDFVWNNLTYLSSLRLFSNLRDLNLALQVHSRMVRFG 267

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALF--SRFQDYESPDQGLRI 240
           F ++     AL++MY + G+V Y  RVF+   H  ++  N     + FQD +S ++ L +
Sbjct: 268 FNAEVEACGALINMYGKCGKVLYAQRVFDD-THAQNIFLNTTIMDAYFQD-KSFEEALNL 325

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M  K   PN  TF ++L + + LS +  G  LH   +K     + +VG +LV+MY K
Sbjct: 326 FSKMDTKEVPPNEYTFAILLNSIAELSLLKQGDLLHGLVLKSGYRNHVMVGNALVNMYAK 385

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
           SG +EDA  AF  +  +D+  +  +I+  +  G    AL+ F +M   G   N  T    
Sbjct: 386 SGSIEDARKAFSGMTFRDIVTWNTMISGCSHHGLGREALEAFDRMIFTGEIPNRITFIGV 445

Query: 361 LNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR- 418
           L  CS +  +  G    + +  K     D+   T +V + +K G   DAE   + + +  
Sbjct: 446 LQACSHIGFVEQGLHYFNQLMKKFDVQPDIQHYTCIVGLLSKAGMFKDAEDFMRTAPIEW 505

Query: 419 DTASWNMMIGG-YVK--HGLGEKALE 441
           D  +W  ++   YV+  + LG+K  E
Sbjct: 506 DVVAWRTLLNACYVRRNYRLGKKVAE 531


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 184/588 (31%), Positives = 311/588 (52%), Gaps = 7/588 (1%)

Query: 15  NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVH 74
           +V+SWN +L    +     KV++ F  M       +K S   +L   +NS  +  G+ +H
Sbjct: 401 DVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIH 460

Query: 75  AMAI-RLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD--VVAWGAIITCLDQQG 131
           ++ + R    ++  ++  LV MY KCG    A  VF  +  P   +V W  ++    Q  
Sbjct: 461 SLILTRRRDYVESSVATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAYAQND 520

Query: 132 CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGN 191
             +EA      M +  V P+    TS++ +   + +    + +   I + G+ S  L   
Sbjct: 521 RSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCSQE---AQVLRMCILESGYRSACL-ET 576

Query: 192 ALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKP 251
           AL+SM+     +     VF  + H D VSW A+ S   +     +   +F +M L+G  P
Sbjct: 577 ALISMHGRCRELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIP 636

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF 311
           +  T    L  C + + +G GK +HA   +  L+ +  V  +L++MY   G   +A   F
Sbjct: 637 DKFTLATTLDTCLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFF 696

Query: 312 DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLA 371
           +++  +DL ++  +  +YAQAG A+ A+  FR+M+LEG+K ++ T ++ LN     A ++
Sbjct: 697 ETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVS 756

Query: 372 NGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV 431
           +G+L H++A ++G   D+ V+T LV +YAKCG +D+A ++F+G+        N +IG   
Sbjct: 757 DGKLFHALAAESGLDSDVSVATGLVKLYAKCGKLDEAMSLFRGACDWTVVLLNAIIGALA 816

Query: 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI 491
           +HG  E+A++ F  M  EG  PD  T V ++SAC H G++EEG   F ++K+ +GI+PT+
Sbjct: 817 QHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTL 876

Query: 492 KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551
           +H+AC +D+LGRAG+    E  I +     N LVW +LLG C   G+ EL E+ A+++LE
Sbjct: 877 EHYACFVDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILE 936

Query: 552 LEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           L+P   + +V  S+I    G+W D    R  +  + +K  P  SW E+
Sbjct: 937 LDPHNSAAHVVLSNIYCATGKWKDADVDRKKMLDENVKNAPGMSWFEI 984



 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 158/492 (32%), Positives = 259/492 (52%), Gaps = 19/492 (3%)

Query: 55  STVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
           + +L+   +S  +  G+  H +    G     FL   L++MY +CG  + A  +F ++++
Sbjct: 29  TALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKMEE 88

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLM-RESSVKPNQFVLTSLVRATTETGDQRCGES 173
            +VV+W A+I+   Q G    A  +F  M  ESS  PN + L +++ A   + D   G S
Sbjct: 89  RNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRS 148

Query: 174 IHAVICKYGFE----SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF- 228
           IHA+I + G E    + TLVGNA+++MY + G +     VF AI  +D VSW A+   + 
Sbjct: 149 IHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAYA 208

Query: 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH 288
           Q+       LRIF +MLL+   PN+ TFI  L AC+SL D   G  LH+   + SL  + 
Sbjct: 209 QERRFYPDALRIFREMLLQPLAPNVITFITALGACTSLRD---GTWLHSLLHEASLGFDP 265

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANK---DLFAYTAIITSYAQAGEAEMALKCFRKM 345
           +   +L++MY K G  E A   F ++A++   DL ++ A+I++  +AG    A+  FR++
Sbjct: 266 LASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRL 325

Query: 346 RLEGIKSNEFTLASCLNGCSPVAT-LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404
           RLEG++ N  TL + LN  +         R  H    ++G+L D+ +  A+++MYAKCG 
Sbjct: 326 RLEGMRPNSVTLITILNALAASGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGF 385

Query: 405 IDDAEAVFKGSALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
              A AVF+    + D  SWN M+G         K +  F  ML  G  P++++F+ +L+
Sbjct: 386 FSAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILN 445

Query: 464 ACSHMGLIEEGKKHFSSI--KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTP 521
           ACS+   ++ G+K  S I  ++   +  ++     ++ + G+ G  +E E    E  L  
Sbjct: 446 ACSNSEALDFGRKIHSLILTRRRDYVESSVATM--LVSMYGKCGSISEAELVFKEMPLPS 503

Query: 522 NALV-WENLLGA 532
            +LV W  +LGA
Sbjct: 504 RSLVTWNVMLGA 515



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 149/479 (31%), Positives = 237/479 (49%), Gaps = 17/479 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLK 59
           +E A  +F  M E NVVSW AL++  A+ G   +   LF +M  +     + ++L  +L 
Sbjct: 76  LEEAHAIFSKMEERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLN 135

Query: 60  GFANSGYIKAGQVVHAMAIRLG----CALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP 115
             ANS  +  G+ +HAM   LG          +  ++++MY+KCG  ++A+ VF  I + 
Sbjct: 136 ACANSRDLAIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEK 195

Query: 116 DVVAWGAIITCLDQQ-GCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
           DVV+W A+     Q+     +A +IF  M    + PN     + + A T   D   G  +
Sbjct: 196 DVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTSLRD---GTWL 252

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ---DSVSWNALFSRFQDY 231
           H+++ +     D L  NAL++MY + G       VF+A+A +   D VSWNA+ S   + 
Sbjct: 253 HSLLHEASLGFDPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEA 312

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKA-CSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
                 + IF ++ L+G +PN  T I IL A  +S  D G  +  H    +     + V+
Sbjct: 313 GRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASGVDFGAARGFHGRIWESGYLRDVVI 372

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANK-DLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           G +++ MY K G    A   F  +  K D+ ++  ++ +          +  F  M L G
Sbjct: 373 GNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAG 432

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHS-IAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
           I  N+ +  + LN CS    L  GR +HS I  +    ++  V+T LV+MY KCGSI +A
Sbjct: 433 IDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSISEA 492

Query: 409 EAVFKGSAL--RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC 465
           E VFK   L  R   +WN+M+G Y ++   ++A  A   ML  G +PD ++F  VLS+C
Sbjct: 493 ELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSC 551



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 168/351 (47%), Gaps = 10/351 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ VF  M   +VVSW A+++  AE+ D ++V +LF  M+       KF+L+T L  
Sbjct: 588 LEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDT 647

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              S  +  G+V+HA    +G   D  +  +L++MYS CG    AL  F  +K  D+V+W
Sbjct: 648 CLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSW 707

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +     Q G  +EA  +F  M+   VKP++   ++ +  +  +     G+  HA+  +
Sbjct: 708 NIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHALAAE 767

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G +SD  V   LV +Y + G++     +F        V  NA+      +   ++ +++
Sbjct: 768 SGLDSDVSVATGLVKLYAKCGKLDEAMSLFRGACDWTVVLLNAIIGALAQHGFSEEAVKM 827

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDV-----GFGKQLHAHTIKHSLDGNHVVGTSLV 295
           F++M  +G +P++ T + I+ AC     V      F        I  +L+  H      V
Sbjct: 828 FWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLE--HY--ACFV 883

Query: 296 DMYDKSGCLEDAGVAFDSLANKD-LFAYTAIITSYAQAGEAEMALKCFRKM 345
           D+  ++G LE A      +  +D    +T+++ +    G+AE+  +C +++
Sbjct: 884 DLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRI 934



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 114/219 (52%), Gaps = 6/219 (2%)

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
           +  +L++C   +D+  GK  H       L+ +  +G  L++MY + G LE+A   F  + 
Sbjct: 28  YTALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKME 87

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS-NEFTLASCLNGCSPVATLANGR 374
            +++ ++TA+I++ AQ G    A   FR M LE   + N +TL + LN C+    LA GR
Sbjct: 88  ERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGR 147

Query: 375 LLHS----IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGY 430
            +H+    + ++        V  A++ MYAKCGS++DA AVF     +D  SW  M G Y
Sbjct: 148 SIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAY 207

Query: 431 VK-HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
            +       AL  FR ML +   P+ ITF+  L AC+ +
Sbjct: 208 AQERRFYPDALRIFREMLLQPLAPNVITFITALGACTSL 246


>gi|297798412|ref|XP_002867090.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312926|gb|EFH43349.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 803

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 182/600 (30%), Positives = 317/600 (52%), Gaps = 6/600 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A ++F  M + +   WN ++ G+   G   + + L+C M     K   F+   V+K 
Sbjct: 76  MEDALQLFDEMNKADTFVWNVMIKGFTSCGLYFEALQLYCRMVFSGVKADSFTYPFVIKS 135

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 ++ G+ +HAM I+L    D ++  SL+ +Y K G + +A KVF  + + D+V+W
Sbjct: 136 VTGISSLEEGKKIHAMVIKLRFVSDVYVCNSLISLYMKLGCSWDAEKVFEEMPERDIVSW 195

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I+          +  +F  M +   KP++F   S + A +       G+ +H    +
Sbjct: 196 NSMISGYLALEDGFRSLMLFKEMLKFGFKPDRFSTMSALGACSHVYSPNMGKELHCHAVR 255

Query: 181 YGFES-DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
              E+ D +V  +++ MY + G VSY  R+F+ I  ++ V+WN L   +           
Sbjct: 256 SRIETGDVMVMTSILDMYSKYGEVSYAERIFKCIIQRNIVAWNVLIGCYARNSRVTDAFL 315

Query: 240 IFYQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            F +M  + G +P++ T I +L AC+ L     G+ +H + ++     + V+ T+L+DMY
Sbjct: 316 CFQKMSEQNGLQPDVITLINLLPACAILE----GRTIHGYAMRRGFLPHIVLDTALIDMY 371

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            + G L+ A V FD +A K+L ++ +II +Y Q G+   AL+ F+K+    +  +  T+A
Sbjct: 372 GEWGQLKSAEVIFDRIAEKNLISWNSIIAAYVQNGKNYSALELFQKLWDSSLLPDSTTIA 431

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L   +   +L+ GR +H+  VK+ +  +  +  +LV MYA CG ++DA   F    L+
Sbjct: 432 SILPAYAESLSLSEGRQIHAYIVKSRYGSNTIILNSLVHMYAMCGDLEDARKCFNHVLLK 491

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D  SWN +I  Y  HG G  ++  F  M+     P++ TF  +L+ACS  G+++EG ++F
Sbjct: 492 DVVSWNSIIMAYAVHGFGRISVCLFSEMIASKVDPNKSTFASLLAACSISGMVDEGWEYF 551

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            S+K+ YGI P I+H+  M+D++GR G F+  + FI E    P A +W +LL A   H +
Sbjct: 552 ESMKREYGIDPGIEHYGYMLDLIGRTGNFSSAKRFIREMPFLPTARIWGSLLNASRNHND 611

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           I + E  AE++ ++E      YV   ++ A   RW D + ++ L+ S+GI +  S S +E
Sbjct: 612 ITVAEFAAEQIFKMEHDNTGCYVLLLNMYAEARRWEDVNRIKLLMESKGISRTSSRSTVE 671



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 135/450 (30%), Positives = 228/450 (50%), Gaps = 20/450 (4%)

Query: 96  YSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVL 155
           ++  GL ++AL++F  +   D   W  +I      G   EA +++  M  S VK + F  
Sbjct: 70  FADSGLMEDALQLFDEMNKADTFVWNVMIKGFTSCGLYFEALQLYCRMVFSGVKADSFTY 129

Query: 156 TSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH 215
             ++++ T       G+ IHA++ K  F SD  V N+L+S+YM+ G      +VFE +  
Sbjct: 130 PFVIKSVTGISSLEEGKKIHAMVIKLRFVSDVYVCNSLISLYMKLGCSWDAEKVFEEMPE 189

Query: 216 QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL 275
           +D VSWN++ S +   E   + L +F +ML  GFKP+  + +  L ACS +     GK+L
Sbjct: 190 RDIVSWNSMISGYLALEDGFRSLMLFKEMLKFGFKPDRFSTMSALGACSHVYSPNMGKEL 249

Query: 276 HAHTIKHSLD-GNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGE 334
           H H ++  ++ G+ +V TS++DMY K G +  A   F  +  +++ A+  +I  YA+   
Sbjct: 250 HCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFKCIIQRNIVAWNVLIGCYARNSR 309

Query: 335 AEMALKCFRKMRLE-GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST 393
              A  CF+KM  + G++ +  TL + L  C+    +  GR +H  A++ G L  + + T
Sbjct: 310 VTDAFLCFQKMSEQNGLQPDVITLINLLPACA----ILEGRTIHGYAMRRGFLPHIVLDT 365

Query: 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP 453
           AL+ MY + G +  AE +F   A ++  SWN +I  YV++G    ALE F+ + D   +P
Sbjct: 366 ALIDMYGEWGQLKSAEVIFDRIAEKNLISWNSIIAAYVQNGKNYSALELFQKLWDSSLLP 425

Query: 454 DEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYG----ITPTIKHFACMIDILGRAGK-F 507
           D  T   +L A +    + EG++ H   +K  YG    I  ++ H   M   L  A K F
Sbjct: 426 DSTTIASILPAYAESLSLSEGRQIHAYIVKSRYGSNTIILNSLVHMYAMCGDLEDARKCF 485

Query: 508 TEIENFITETKLTPNALVWENLLGACSWHG 537
             +        L  + + W +++ A + HG
Sbjct: 486 NHV--------LLKDVVSWNSIIMAYAVHG 507


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 179/529 (33%), Positives = 286/529 (54%), Gaps = 1/529 (0%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           +HA  +  G     FL    V+     G    A KVF    +P V  W AII        
Sbjct: 90  IHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNF 149

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
             +A ++++ M+ S V P+ F L  +++A +       G+ +H  I + GFESD  V N 
Sbjct: 150 FGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNG 209

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           LV++Y + GRV     VFE +  ++ VSW ++ S +     P + LRIF QM  +  KP+
Sbjct: 210 LVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPD 269

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
               + +L+A + + D+  GK +H   +K  L+    +  SL  MY K G +  A   FD
Sbjct: 270 WIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFD 329

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
            +   ++  + A+I+ YA+ G    A+  F++M  + I+++  T+ S +  C+ V +L  
Sbjct: 330 QMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDL 389

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
            + +     KT +  D+FV+TAL+ M+AKCGS+D A  VF  +  +D   W+ MI GY  
Sbjct: 390 AKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGL 449

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK 492
           HG G+ A++ F  M   G  P+++TFV +L+AC+H GL+EEG + F S+ K YGI    +
Sbjct: 450 HGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSM-KYYGIEARHQ 508

Query: 493 HFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLEL 552
           H+AC++D+LGR+G   E  +FIT   + P   VW  LLGAC  + ++ L E  AE+L  L
Sbjct: 509 HYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIYRHVTLGEYAAEQLFSL 568

Query: 553 EPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           +P    +YV  S++ A+   W+  + VR L+  +G+ K+   S IE++G
Sbjct: 569 DPFNTGHYVQLSNLYASSRLWDSVAKVRILMREKGLSKDLGYSLIEING 617



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 125/450 (27%), Positives = 213/450 (47%), Gaps = 20/450 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF   PE +V  WNA++ GY+        + ++  M+        F+L  VLK  + 
Sbjct: 122 ARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSG 181

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ G+ VH    RLG   D F+   LV +Y+KCG  + A  VF  + D ++V+W ++
Sbjct: 182 VPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSM 241

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG- 182
           I+   Q G   EA +IF  MR+ +VKP+   L S++RA T+  D   G+SIH  + K G 
Sbjct: 242 ISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGL 301

Query: 183 -FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
            FE D L+  +L +MY + G+V      F+ +   + + WNA+ S +      ++ + +F
Sbjct: 302 EFEPDLLI--SLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLF 359

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M+ K  + +  T    + AC+ +  +   K +  +  K     +  V T+L+DM+ K 
Sbjct: 360 QEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKC 419

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G ++ A   FD   +KD+  ++A+I  Y   G  + A+  F  M+  G+  N+ T    L
Sbjct: 420 GSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLL 479

Query: 362 NGCSPVATLANG-RLLHS-----IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
             C+    +  G  L HS     I  +  H         +V +  + G +++A       
Sbjct: 480 TACNHSGLVEEGWELFHSMKYYGIEARHQHY------ACVVDLLGRSGHLNEAYDFITTM 533

Query: 416 ALRDTAS-WNMMIGG---YVKHGLGEKALE 441
            +    S W  ++G    Y    LGE A E
Sbjct: 534 PIEPGVSVWGALLGACKIYRHVTLGEYAAE 563



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 151/307 (49%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ VF+ + + N+VSW ++++GY ++G   + + +F  M+    K    +L +VL+ 
Sbjct: 220 VEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRA 279

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           + +   ++ G+ +H   +++G   +  L  SL  MY+KCG    A   F +++ P+V+ W
Sbjct: 280 YTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMW 339

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I+   + G   EA  +F  M   +++ +   + S + A  + G     + +   I K
Sbjct: 340 NAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINK 399

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             + +D  V  AL+ M+ + G V     VF+    +D V W+A+   +  +      + +
Sbjct: 400 TEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDL 459

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           FY M   G  PN  TF+ +L AC+    V  G +L      + ++  H     +VD+  +
Sbjct: 460 FYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSMKYYGIEARHQHYACVVDLLGR 519

Query: 301 SGCLEDA 307
           SG L +A
Sbjct: 520 SGHLNEA 526



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 124/265 (46%), Gaps = 2/265 (0%)

Query: 273 KQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQA 332
            Q+HA  +   L  +  + T  V+     G +  A   FD      +F + AII  Y+  
Sbjct: 88  NQIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSH 147

Query: 333 GEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS 392
                A++ + +M+  G+  + FTL   L  CS V  L  G+ +H    + G   D+FV 
Sbjct: 148 NFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQ 207

Query: 393 TALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV 452
             LVA+YAKCG ++ A  VF+G   R+  SW  MI GY ++GL  +AL  F  M      
Sbjct: 208 NGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVK 267

Query: 453 PDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIEN 512
           PD I  V VL A + +  +E+GK     + K+ G+         +  +  + G+     +
Sbjct: 268 PDWIALVSVLRAYTDVEDLEQGKSIHGCVVKM-GLEFEPDLLISLTAMYAKCGQVMVARS 326

Query: 513 FITETKLTPNALVWENLLGACSWHG 537
           F  + ++ PN ++W  ++   + +G
Sbjct: 327 FFDQMEI-PNVMMWNAMISGYAKNG 350


>gi|297838697|ref|XP_002887230.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297333071|gb|EFH63489.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1347

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 182/598 (30%), Positives = 316/598 (52%), Gaps = 4/598 (0%)

Query: 4    AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
            A++VF  MP  ++V+W+ L++   E+ +  K + +F  M D   +    ++ +V++G A 
Sbjct: 713  AEKVFDGMPVRDLVAWSTLVSSCLENCEVLKALRMFKCMVDDGVEPDAVTMISVVEGCAE 772

Query: 64   SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
             G ++  + VH    R     D+ L  SL+ MYSKCG   ++ K+F +I   + V+W A+
Sbjct: 773  LGCLRIARSVHGQITRKMFDFDETLCNSLLTMYSKCGDLLSSEKIFEKIAKKNAVSWTAM 832

Query: 124  ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
            I+  ++    ++A + F+ M +S ++PN   L S++ +    G  R G+S+H    +   
Sbjct: 833  ISSYNRGEFSEKALRSFSEMLKSGIEPNLVTLYSILSSCGLNGLIREGKSVHGFAIRREL 892

Query: 184  ESD-TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            + +   +  ALV +Y E GR+     +   +  ++ V WN+  S +       + L +F 
Sbjct: 893  DPNYESLSPALVELYAECGRLGDCETILHVVGDRNIVLWNSHISLYAHRGMVIEALCLFR 952

Query: 243  QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            QM+    KP+  T   I+ AC +   V  GKQ+H H I+  +  +  V  S++DMY KSG
Sbjct: 953  QMVTWRIKPDSFTLASIISACENTGLVRLGKQIHGHVIRTDV-SDEFVQNSVIDMYSKSG 1011

Query: 303  CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
             +  A   FD + ++ +  + +++  ++Q G +  A+  F  M    ++ N+ T  + + 
Sbjct: 1012 FVNLACTVFDQIKHRSIVTWNSMLCGFSQNGNSLEAINLFDYMYHSCLEINKVTFLAVIQ 1071

Query: 363  GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
             CS + +L  GR +H   +  G + D+F  TAL+ MYAKCG ++ AE VF+  + R   S
Sbjct: 1072 ACSSIGSLEKGRWVHHKLIVCG-IKDLFTDTALIDMYAKCGDLNTAETVFRAMSNRSIVS 1130

Query: 423  WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
            W+ MI  Y  HG    A+  F  M++ G  P+E+ F+ VLSAC H G +EEGK +F ++ 
Sbjct: 1131 WSSMINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSACGHSGSVEEGKYYF-NLM 1189

Query: 483  KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
            K++G++P  +HFAC ID+L R+G   E    I E     +A VW +L+  C  H  +++ 
Sbjct: 1190 KLFGVSPNSEHFACFIDLLSRSGDLKEAYRTIKEMPFLADASVWGSLVNGCRIHQKMDII 1249

Query: 543  EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
            +     + ++       Y   S+I A +G W +F  +R+ + S  +KK P  S IE+D
Sbjct: 1250 KAIKNDISDIVTDDTGYYTLLSNIYAEEGEWEEFRRMRSAMKSLNLKKVPGYSAIEID 1307



 Score =  224 bits (571), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 159/574 (27%), Positives = 279/574 (48%), Gaps = 41/574 (7%)

Query: 4    AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
            ++ VF++ P  +   +  L+            + L+  +   + + SKF   +VL+  A 
Sbjct: 611  SRLVFEAFPYPDSFMYGVLIKCNVWCHLLDAAIDLYHRLVSEKTQISKFVFPSVLRACAG 670

Query: 64   SG-YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
            S  ++  G+ VH   I+ G   D  +  SL+ MY + G   +A KVF  +   D+VAW  
Sbjct: 671  SREHLSVGRKVHGRIIKSGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWST 730

Query: 123  IIT-CLDQQGCCQ--EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            +++ CL+    C+  +A ++F  M +  V+P+   + S+V    E G  R   S+H  I 
Sbjct: 731  LVSSCLEN---CEVLKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQIT 787

Query: 180  KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
            +  F+ D  + N+L++MY + G +    ++FE IA +++VSW A+ S +   E  ++ LR
Sbjct: 788  RKMFDFDETLCNSLLTMYSKCGDLLSSEKIFEKIAKKNAVSWTAMISSYNRGEFSEKALR 847

Query: 240  IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH-VVGTSLVDMY 298
             F +ML  G +PN+ T   IL +C     +  GK +H   I+  LD N+  +  +LV++Y
Sbjct: 848  SFSEMLKSGIEPNLVTLYSILSSCGLNGLIREGKSVHGFAIRRELDPNYESLSPALVELY 907

Query: 299  DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
             + G L D       + ++++  + + I+ YA  G    AL  FR+M    IK + FTLA
Sbjct: 908  AECGRLGDCETILHVVGDRNIVLWNSHISLYAHRGMVIEALCLFRQMVTWRIKPDSFTLA 967

Query: 359  SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
            S ++ C     +  G+ +H   ++T  + D FV  +++ MY+K G ++ A  VF     R
Sbjct: 968  SIISACENTGLVRLGKQIHGHVIRTD-VSDEFVQNSVIDMYSKSGFVNLACTVFDQIKHR 1026

Query: 419  DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK--K 476
               +WN M+ G+ ++G   +A+  F  M       +++TF+ V+ ACS +G +E+G+   
Sbjct: 1027 SIVTWNSMLCGFSQNGNSLEAINLFDYMYHSCLEINKVTFLAVIQACSSIGSLEKGRWVH 1086

Query: 477  H---FSSIKKIYGITPTIKHFA------------------------CMID---ILGRAGK 506
            H      IK ++  T  I  +A                         MI+   + GR G 
Sbjct: 1087 HKLIVCGIKDLFTDTALIDMYAKCGDLNTAETVFRAMSNRSIVSWSSMINAYGMHGRIGS 1146

Query: 507  FTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
                 N + E+   PN +V+ N+L AC   G++E
Sbjct: 1147 AISTFNQMVESGTKPNEVVFMNVLSACGHSGSVE 1180



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 123/460 (26%), Positives = 219/460 (47%), Gaps = 13/460 (2%)

Query: 85   DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMR 144
            D      L++ Y+  G  D++  VF     PD   +G +I C         A  +++ + 
Sbjct: 591  DPLPVTKLIESYAFMGSPDSSRLVFEAFPYPDSFMYGVLIKCNVWCHLLDAAIDLYHRLV 650

Query: 145  ESSVKPNQFVLTSLVRATTETGDQ-RCGESIHAVICKYGFESDTLVGNALVSMYMENGRV 203
                + ++FV  S++RA   + +    G  +H  I K G + D ++  +L+ MY + G +
Sbjct: 651  SEKTQISKFVFPSVLRACAGSREHLSVGRKVHGRIIKSGVDDDAVIETSLLCMYGQTGNL 710

Query: 204  SYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKAC 263
            S   +VF+ +  +D V+W+ L S   +     + LR+F  M+  G +P+  T I +++ C
Sbjct: 711  SDAEKVFDGMPVRDLVAWSTLVSSCLENCEVLKALRMFKCMVDDGVEPDAVTMISVVEGC 770

Query: 264  SSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYT 323
            + L  +   + +H    +   D +  +  SL+ MY K G L  +   F+ +A K+  ++T
Sbjct: 771  AELGCLRIARSVHGQITRKMFDFDETLCNSLLTMYSKCGDLLSSEKIFEKIAKKNAVSWT 830

Query: 324  AIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKT 383
            A+I+SY +   +E AL+ F +M   GI+ N  TL S L+ C     +  G+ +H  A++ 
Sbjct: 831  AMISSYNRGEFSEKALRSFSEMLKSGIEPNLVTLYSILSSCGLNGLIREGKSVHGFAIRR 890

Query: 384  GHLLDM---FVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKAL 440
               LD     +S ALV +YA+CG + D E +      R+   WN  I  Y   G+  +AL
Sbjct: 891  E--LDPNYESLSPALVELYAECGRLGDCETILHVVGDRNIVLWNSHISLYAHRGMVIEAL 948

Query: 441  EAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFA--CMI 498
              FR M+     PD  T   ++SAC + GL+  GK+    + +    T     F    +I
Sbjct: 949  CLFRQMVTWRIKPDSFTLASIISACENTGLVRLGKQIHGHVIR----TDVSDEFVQNSVI 1004

Query: 499  DILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            D+  ++G F  +   + +     + + W ++L   S +GN
Sbjct: 1005 DMYSKSG-FVNLACTVFDQIKHRSIVTWNSMLCGFSQNGN 1043



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 172/350 (49%), Gaps = 6/350 (1%)

Query: 169 RCGESIHAVICKYG-FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR 227
           R    +HA +   G    D L    L+  Y   G       VFEA  + DS  +  L   
Sbjct: 573 RLVSQLHAHLLVTGRLRRDPLPVTKLIESYAFMGSPDSSRLVFEAFPYPDSFMYGVLIKC 632

Query: 228 FQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACS-SLSDVGFGKQLHAHTIKHSLDG 286
                  D  + ++++++ +  + +   F  +L+AC+ S   +  G+++H   IK  +D 
Sbjct: 633 NVWCHLLDAAIDLYHRLVSEKTQISKFVFPSVLRACAGSREHLSVGRKVHGRIIKSGVDD 692

Query: 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR 346
           + V+ TSL+ MY ++G L DA   FD +  +DL A++ +++S  +  E   AL+ F+ M 
Sbjct: 693 DAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLENCEVLKALRMFKCMV 752

Query: 347 LEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSID 406
            +G++ +  T+ S + GC+ +  L   R +H    +     D  +  +L+ MY+KCG + 
Sbjct: 753 DDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDFDETLCNSLLTMYSKCGDLL 812

Query: 407 DAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
            +E +F+  A ++  SW  MI  Y +    EKAL +F  ML  G  P+ +T   +LS+C 
Sbjct: 813 SSEKIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMLKSGIEPNLVTLYSILSSCG 872

Query: 467 HMGLIEEGKK-HFSSIKKIYGITPTIKHFA-CMIDILGRAGKFTEIENFI 514
             GLI EGK  H  +I++   + P  +  +  ++++    G+  + E  +
Sbjct: 873 LNGLIREGKSVHGFAIRR--ELDPNYESLSPALVELYAECGRLGDCETIL 920



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 123/259 (47%), Gaps = 13/259 (5%)

Query: 1    MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
            + LA  VF  +   ++V+WN++L G++++G+  + ++LF  M     + +K +   V++ 
Sbjct: 1013 VNLACTVFDQIKHRSIVTWNSMLCGFSQNGNSLEAINLFDYMYHSCLEINKVTFLAVIQA 1072

Query: 61   FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             ++ G ++ G+ VH   I  G   D F   +L+DMY+KCG  + A  VF  + +  +V+W
Sbjct: 1073 CSSIGSLEKGRWVHHKLIVCGIK-DLFTDTALIDMYAKCGDLNTAETVFRAMSNRSIVSW 1131

Query: 121  GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             ++I      G    A   FN M ES  KPN+ V  +++ A   +G    G+    ++  
Sbjct: 1132 SSMINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSACGHSGSVEEGKYYFNLMKL 1191

Query: 181  YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH-QDSVSWNALFSRFQDYESPDQGLR 239
            +G   ++      + +   +G +    R  + +    D+  W +L +          G R
Sbjct: 1192 FGVSPNSEHFACFIDLLSRSGDLKEAYRTIKEMPFLADASVWGSLVN----------GCR 1241

Query: 240  IFYQM-LLKGFKPNMCTFI 257
            I  +M ++K  K ++   +
Sbjct: 1242 IHQKMDIIKAIKNDISDIV 1260


>gi|356533824|ref|XP_003535458.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 630

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 187/548 (34%), Positives = 295/548 (53%), Gaps = 16/548 (2%)

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127
           K  Q  HA  +  G A + FL+  LV  Y+ CG    +  VF  ++   V  W ++I   
Sbjct: 45  KLAQQSHAQILANGFAQNAFLATRLVSAYATCGELATSRFVFESVEAKSVYLWNSLINGY 104

Query: 128 DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDT 187
            +    ++A  +F  M  + + P+ + L ++ +   E  D   G+ IH    + GF SD 
Sbjct: 105 VKNHDFRQALALFREMGRNGMLPDDYTLATVFKVFGELEDLVSGKLIHGKGIRIGFVSDV 164

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ-----DYESPDQGLRIFY 242
           +VGN+L+SMY   G      +VF+   H++  S+N + S        ++ S D     F 
Sbjct: 165 VVGNSLMSMYCRCGEFGDAVKVFDETPHRNVGSFNVVISGCAALENCNFTSHDDLSNFFL 224

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVG---FGKQLHAHTIKHSLD----GNHVVGTSLV 295
           +M  +GFK +  T   +L  C    D G   +G++LH + +K+ LD     +  +G+SL+
Sbjct: 225 RMQCEGFKADAFTVASLLPVCCG--DTGKWDYGRELHCYVVKNGLDLKMDSDVHLGSSLI 282

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL-EGIKSNE 354
           DMY +S  +      FD + N++++ +TA+I  Y Q G  + AL   R M++ +GI+ N+
Sbjct: 283 DMYSRSKKVVLGRRVFDQMKNRNVYVWTAMINGYVQNGAPDDALVLLRAMQMKDGIRPNK 342

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            +L S L  C  +A L  G+ +H  ++K     D+ +  AL+ MY+KCGS+D A   F+ 
Sbjct: 343 VSLISALPACGLLAGLIGGKQIHGFSIKMELNDDVSLCNALIDMYSKCGSLDYARRAFET 402

Query: 415 SA-LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
           S+  +D  +W+ MI  Y  HG GE+A+ A+  ML +G+ PD IT V VLSACS  GL++E
Sbjct: 403 SSYFKDAITWSSMISAYGLHGRGEEAIIAYYKMLQQGFKPDMITVVGVLSACSKSGLVDE 462

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           G   + S+   Y I PT++  AC++D+LGR+G+  +   FI E  L P   VW +LL A 
Sbjct: 463 GISIYKSLMTKYEIKPTVEICACVVDMLGRSGQLDQALEFIKEMPLDPGPSVWGSLLTAS 522

Query: 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPS 593
             HGN    +     LLELEP+  SNY+  S+  A+  RW+  + VR ++  +G+KK P 
Sbjct: 523 VIHGNSRTRDLAYRHLLELEPENPSNYISLSNTYASDRRWDVVTEVRTIMKERGLKKVPG 582

Query: 594 CSWIEVDG 601
           CSWI + G
Sbjct: 583 CSWITISG 590



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 127/459 (27%), Positives = 226/459 (49%), Gaps = 14/459 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           ++ VF+S+   +V  WN+L+NGY ++ D ++ + LF  M         ++L+TV K F  
Sbjct: 82  SRFVFESVEAKSVYLWNSLINGYVKNHDFRQALALFREMGRNGMLPDDYTLATVFKVFGE 141

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              + +G+++H   IR+G   D  +  SL+ MY +CG   +A+KVF      +V ++  +
Sbjct: 142 LEDLVSGKLIHGKGIRIGFVSDVVVGNSLMSMYCRCGEFGDAVKVFDETPHRNVGSFNVV 201

Query: 124 IT-CLDQQGCC----QEAAKIFNLMRESSVKPNQFVLTSLVRATT-ETGDQRCGESIHAV 177
           I+ C   + C      + +  F  M+    K + F + SL+     +TG    G  +H  
Sbjct: 202 ISGCAALENCNFTSHDDLSNFFLRMQCEGFKADAFTVASLLPVCCGDTGKWDYGRELHCY 261

Query: 178 ICKYGF----ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           + K G     +SD  +G++L+ MY  + +V  G RVF+ + +++   W A+ + +    +
Sbjct: 262 VVKNGLDLKMDSDVHLGSSLIDMYSRSKKVVLGRRVFDQMKNRNVYVWTAMINGYVQNGA 321

Query: 234 PDQGLRIFYQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
           PD  L +   M +K G +PN  + I  L AC  L+ +  GKQ+H  +IK  L+ +  +  
Sbjct: 322 PDDALVLLRAMQMKDGIRPNKVSLISALPACGLLAGLIGGKQIHGFSIKMELNDDVSLCN 381

Query: 293 SLVDMYDKSGCLEDAGVAFDSLAN-KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
           +L+DMY K G L+ A  AF++ +  KD   ++++I++Y   G  E A+  + KM  +G K
Sbjct: 382 ALIDMYSKCGSLDYARRAFETSSYFKDAITWSSMISAYGLHGRGEEAIIAYYKMLQQGFK 441

Query: 352 SNEFTLASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
            +  T+   L+ CS    +  G  +  S+  K      + +   +V M  + G +D A  
Sbjct: 442 PDMITVVGVLSACSKSGLVDEGISIYKSLMTKYEIKPTVEICACVVDMLGRSGQLDQALE 501

Query: 411 VFKGSALRDTAS-WNMMIGGYVKHGLGEKALEAFRMMLD 448
             K   L    S W  ++   V HG       A+R +L+
Sbjct: 502 FIKEMPLDPGPSVWGSLLTASVIHGNSRTRDLAYRHLLE 540



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 105/398 (26%), Positives = 175/398 (43%), Gaps = 14/398 (3%)

Query: 155 LTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA 214
           L  L++   +   Q+  +  HA I   GF  +  +   LVS Y   G ++    VFE++ 
Sbjct: 31  LLHLLQLCIDLRSQKLAQQSHAQILANGFAQNAFLATRLVSAYATCGELATSRFVFESVE 90

Query: 215 HQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ 274
            +    WN+L + +       Q L +F +M   G  P+  T   + K    L D+  GK 
Sbjct: 91  AKSVYLWNSLINGYVKNHDFRQALALFREMGRNGMLPDDYTLATVFKVFGELEDLVSGKL 150

Query: 275 LHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGE 334
           +H   I+     + VVG SL+ MY + G   DA   FD   ++++ ++  +I+  A    
Sbjct: 151 IHGKGIRIGFVSDVVVGNSLMSMYCRCGEFGDAVKVFDETPHRNVGSFNVVISGCAALEN 210

Query: 335 AEMA-----LKCFRKMRLEGIKSNEFTLASCLN-GCSPVATLANGRLLHSIAVKTGHLL- 387
                       F +M+ EG K++ FT+AS L   C        GR LH   VK G  L 
Sbjct: 211 CNFTSHDDLSNFFLRMQCEGFKADAFTVASLLPVCCGDTGKWDYGRELHCYVVKNGLDLK 270

Query: 388 ---DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
              D+ + ++L+ MY++   +     VF     R+   W  MI GYV++G  + AL   R
Sbjct: 271 MDSDVHLGSSLIDMYSRSKKVVLGRRVFDQMKNRNVYVWTAMINGYVQNGAPDDALVLLR 330

Query: 445 -MMLDEGYVPDEITFVVVLSACSHM-GLIEEGKKHFSSIKKIYGITPTIKHFACMIDILG 502
            M + +G  P++++ +  L AC  + GLI   + H  SIK    +   +     +ID+  
Sbjct: 331 AMQMKDGIRPNKVSLISALPACGLLAGLIGGKQIHGFSIK--MELNDDVSLCNALIDMYS 388

Query: 503 RAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + G           +    +A+ W +++ A   HG  E
Sbjct: 389 KCGSLDYARRAFETSSYFKDAITWSSMISAYGLHGRGE 426



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 5/205 (2%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESG--DGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           L +RVF  M   NV  W A++NGY ++G  D   V+     MKD  +  +K SL + L  
Sbjct: 293 LGRRVFDQMKNRNVYVWTAMINGYVQNGAPDDALVLLRAMQMKDGIRP-NKVSLISALPA 351

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD-PDVVA 119
                 +  G+ +H  +I++    D  L  +L+DMYSKCG  D A + F       D + 
Sbjct: 352 CGLLAGLIGGKQIHGFSIKMELNDDVSLCNALIDMYSKCGSLDYARRAFETSSYFKDAIT 411

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH-AVI 178
           W ++I+     G  +EA   +  M +   KP+   +  ++ A +++G    G SI+ +++
Sbjct: 412 WSSMISAYGLHGRGEEAIIAYYKMLQQGFKPDMITVVGVLSACSKSGLVDEGISIYKSLM 471

Query: 179 CKYGFESDTLVGNALVSMYMENGRV 203
            KY  +    +   +V M   +G++
Sbjct: 472 TKYEIKPTVEICACVVDMLGRSGQL 496


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 179/583 (30%), Positives = 302/583 (51%), Gaps = 54/583 (9%)

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADN------ALKVFYRIKDPD 116
           N   +++ +++HA  I+ G     +    L++    C L+ +      A+ VF  I++P+
Sbjct: 11  NCKTLQSLRMIHAQMIKTGLHNTNYALSKLIEF---CVLSPHFDGLPYAISVFETIQEPN 67

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
           ++ W  +            A  ++  M    + PN +    L+++  ++   R G+ IH 
Sbjct: 68  LLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHG 127

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS---------------- 220
            + K G++ D  V  +L+SMY++NGR+    +VF+  +H+D VS                
Sbjct: 128 HVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIAS 187

Query: 221 ---------------WNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSS 265
                          WNA+ S + +  +  + L +F +M+    +P+  T + ++ AC+ 
Sbjct: 188 AQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQ 247

Query: 266 LSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
            + +  G+Q+H+    H    N  +  +L+D+Y K G +E A   F+ L+ KD+ ++  +
Sbjct: 248 SASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTL 307

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLH-------- 377
           I  Y      + AL  F++M   G   N+ T+ S L  C+ +  +  GR +H        
Sbjct: 308 IGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLK 367

Query: 378 SIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGE 437
            +A  + H       T+L+ MYAKCG I+ A+ VF     R  +SWN MI G+  HG   
Sbjct: 368 GVANASSH------RTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRAN 421

Query: 438 KALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACM 497
            A + F  M      PD+ITFV +LSACSH G+++ G+  F S+K+ Y ITP ++H+ CM
Sbjct: 422 AAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCM 481

Query: 498 IDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKME 557
           ID+LG +G F E E  I   ++ P+ ++W +LL AC  + N+EL E  A+ L+++EPK  
Sbjct: 482 IDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNP 541

Query: 558 SNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
            +YV  S+I AT GRWN+ + +RALL+ +G+KK P CS IE+D
Sbjct: 542 GSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEID 584



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 146/546 (26%), Positives = 249/546 (45%), Gaps = 74/546 (13%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A  VF+++ E N++ WN +  G+A S D    ++L+  M  +    + ++   +LK 
Sbjct: 53  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKS 112

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYR--------- 111
            A S   + GQ +H   ++LG  LD ++  SL+ MY + G  ++A KVF +         
Sbjct: 113 CAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSY 172

Query: 112 ----------------------IKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK 149
                                 I   DVV+W A+I+   + G  +EA ++F  M +++V+
Sbjct: 173 TALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVR 232

Query: 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRV 209
           P++  + S+V A  ++     G  +H+ I  +GF S+  + NAL+ +Y++ G V     +
Sbjct: 233 PDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGL 292

Query: 210 FEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDV 269
           FE ++++D +SWN L   +       + L +F +ML  G  PN  T + IL AC+ L  +
Sbjct: 293 FEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAI 352

Query: 270 GFGKQLHAHTIKHSLDG-----NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA 324
             G+ +H + I   L G     +H   TSL+DMY K G +E A   FDS+ N+ L ++ A
Sbjct: 353 EIGRWIHVY-INKRLKGVANASSH--RTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNA 409

Query: 325 IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           +I  +A  G A  A   F +MR   I+ ++ T    L+ CS    L  GR          
Sbjct: 410 MIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGR---------- 459

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
               +F S             +D +   K         +  MI      GL ++A E   
Sbjct: 460 ---HIFRSMK-----------EDYKITPK------LEHYGCMIDLLGHSGLFKEAEEMIN 499

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA 504
            M  E   PD + +  +L AC     +E G+ +  ++ KI    P    +  + +I   A
Sbjct: 500 TMEME---PDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNPG--SYVLLSNIYATA 554

Query: 505 GKFTEI 510
           G++ E+
Sbjct: 555 GRWNEV 560


>gi|326522845|dbj|BAJ88468.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 776

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 176/548 (32%), Positives = 289/548 (52%), Gaps = 12/548 (2%)

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +G + A + +H   ++ G A D F++ SLV++Y +C  + +A ++F  + D +VV W A+
Sbjct: 89  AGGLGAARALHGHMVKTGTAADMFVATSLVNVYMRCASSRDARRLFDGMPDKNVVTWTAL 148

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           IT          A ++F  M E    P+ + L  ++ A +       G+ +H    KYG 
Sbjct: 149 ITGHTLNSEPALALEVFVEMLELGRYPSHYTLGGMLSACSAARRIDLGQQVHGYSIKYGA 208

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR-FQDYESPDQGLRIFY 242
           ++ T +GN+L  +Y ++G +  G R F+    ++ ++W  + S   +D    D GL +F 
Sbjct: 209 DTITSMGNSLCRLYCKSGDLESGLRAFKGTPDKNVITWTTMISSCAEDENYLDLGLSLFL 268

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            ML  G  PN  T   ++  C +  D+  GKQ+ A   K   + N  V  S + +Y + G
Sbjct: 269 DMLEGGVMPNEFTLTSVMSLCGARLDMSLGKQVQAFCYKVGCEANLPVKNSTMYLYLRKG 328

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAE-----------MALKCFRKMRLEGIK 351
             ++A   F+ + +  +  + A+I+ YAQ  ++             ALK FR +    +K
Sbjct: 329 ETDEAMRLFEEMDSSSIITWNAMISGYAQIMDSAKDDLHARSRGFQALKLFRDLVRSELK 388

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            + FT +S L+ CS +  L  G  +H+  +KTG L D+ V++ALV MY KCGSI+ A   
Sbjct: 389 PDLFTFSSILSVCSAMMALEQGEQIHANTIKTGCLSDVVVNSALVNMYNKCGSIECATKA 448

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F     R   +W  MI GY +HG  + A++ F  M+  G  P+EITFV +LSACS+ GL+
Sbjct: 449 FVEMPTRTPVTWTSMISGYSQHGRSQDAIQLFEDMVLSGARPNEITFVSLLSACSYAGLV 508

Query: 472 EEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLG 531
           EE +++F  ++  Y I P + H+ CM+D+  R G+  +  +FI  T   PN  +W +L+ 
Sbjct: 509 EEAERYFDMMRNEYHIEPLVDHYGCMVDMFVRLGRLDDAFSFIKRTGFEPNEAIWSSLVA 568

Query: 532 ACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
            C  HGN+EL    A++LLEL+PK+   YV   ++  + GRW D + VR L   + +   
Sbjct: 569 GCRSHGNMELAFYAADRLLELKPKVIETYVLLLNMYISTGRWRDVARVRKLAKHEDVGVL 628

Query: 592 PSCSWIEV 599
              SWI +
Sbjct: 629 RDRSWIAI 636



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 135/477 (28%), Positives = 237/477 (49%), Gaps = 21/477 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R+F  MP+ NVV+W AL+ G+  + +    + +F  M ++ +  S ++L  +L   + 
Sbjct: 130 ARRLFDGMPDKNVVTWTALITGHTLNSEPALALEVFVEMLELGRYPSHYTLGGMLSACSA 189

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +  I  GQ VH  +I+ G      +  SL  +Y K G  ++ L+ F    D +V+ W  +
Sbjct: 190 ARRIDLGQQVHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTPDKNVITWTTM 249

Query: 124 I-TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I +C + +        +F  M E  V PN+F LTS++       D   G+ + A   K G
Sbjct: 250 ISSCAEDENYLDLGLSLFLDMLEGGVMPNEFTLTSVMSLCGARLDMSLGKQVQAFCYKVG 309

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNAL---FSRFQDYESPD---- 235
            E++  V N+ + +Y+  G      R+FE +     ++WNA+   +++  D    D    
Sbjct: 310 CEANLPVKNSTMYLYLRKGETDEAMRLFEEMDSSSIITWNAMISGYAQIMDSAKDDLHAR 369

Query: 236 ----QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
               Q L++F  ++    KP++ TF  IL  CS++  +  G+Q+HA+TIK     + VV 
Sbjct: 370 SRGFQALKLFRDLVRSELKPDLFTFSSILSVCSAMMALEQGEQIHANTIKTGCLSDVVVN 429

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
           ++LV+MY+K G +E A  AF  +  +    +T++I+ Y+Q G ++ A++ F  M L G +
Sbjct: 430 SALVNMYNKCGSIECATKAFVEMPTRTPVTWTSMISGYSQHGRSQDAIQLFEDMVLSGAR 489

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH---LLDMFVSTALVAMYAKCGSIDDA 408
            NE T  S L+ CS    +        +     H   L+D +    +V M+ + G +DDA
Sbjct: 490 PNEITFVSLLSACSYAGLVEEAERYFDMMRNEYHIEPLVDHY--GCMVDMFVRLGRLDDA 547

Query: 409 EAVFKGSALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI-TFVVVLS 463
            +  K +    + A W+ ++ G   HG  E A  A   +L+    P  I T+V++L+
Sbjct: 548 FSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLLE--LKPKVIETYVLLLN 602



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 114/432 (26%), Positives = 204/432 (47%), Gaps = 25/432 (5%)

Query: 135 EAAKIFNLMRE-SSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNAL 193
           +A +   ++R+  +V+   +V   L+    E G      ++H  + K G  +D  V  +L
Sbjct: 60  DAQEAMGMLRDGQTVQSAMYV--PLLHRCVEAGGLGAARALHGHMVKTGTAADMFVATSL 117

Query: 194 VSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
           V++YM         R+F+ +  ++ V+W AL +       P   L +F +ML  G  P+ 
Sbjct: 118 VNVYMRCASSRDARRLFDGMPDKNVVTWTALITGHTLNSEPALALEVFVEMLELGRYPSH 177

Query: 254 CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
            T   +L ACS+   +  G+Q+H ++IK+  D    +G SL  +Y KSG LE    AF  
Sbjct: 178 YTLGGMLSACSAARRIDLGQQVHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKG 237

Query: 314 LANKDLFAYTAIITSYAQ-AGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
             +K++  +T +I+S A+     ++ L  F  M   G+  NEFTL S ++ C     ++ 
Sbjct: 238 TPDKNVITWTTMISSCAEDENYLDLGLSLFLDMLEGGVMPNEFTLTSVMSLCGARLDMSL 297

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
           G+ + +   K G   ++ V  + + +Y + G  D+A  +F+        +WN MI GY +
Sbjct: 298 GKQVQAFCYKVGCEANLPVKNSTMYLYLRKGETDEAMRLFEEMDSSSIITWNAMISGYAQ 357

Query: 433 -----------HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSS 480
                         G +AL+ FR ++     PD  TF  +LS CS M  +E+G++ H ++
Sbjct: 358 IMDSAKDDLHARSRGFQALKLFRDLVRSELKPDLFTFSSILSVCSAMMALEQGEQIHANT 417

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFT-EIENFITETKLTPNALVWENLLGACSWHGNI 539
           IK   G    +   + ++++  + G      + F+     TP  + W +++   S HG  
Sbjct: 418 IKT--GCLSDVVVNSALVNMYNKCGSIECATKAFVEMPTRTP--VTWTSMISGYSQHGR- 472

Query: 540 ELDEKDAEKLLE 551
               +DA +L E
Sbjct: 473 ---SQDAIQLFE 481



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 155/324 (47%), Gaps = 21/324 (6%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKV-MHLFCSMKDMEKKFSKFSLSTVLK 59
           +E   R FK  P+ NV++W  +++  AE  +   + + LF  M +     ++F+L++V+ 
Sbjct: 228 LESGLRAFKGTPDKNVITWTTMISSCAEDENYLDLGLSLFLDMLEGGVMPNEFTLTSVMS 287

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
                  +  G+ V A   ++GC  +  +  S + +Y + G  D A+++F  +    ++ 
Sbjct: 288 LCGARLDMSLGKQVQAFCYKVGCEANLPVKNSTMYLYLRKGETDEAMRLFEEMDSSSIIT 347

Query: 120 WGAIITCLDQ-----------QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ 168
           W A+I+   Q           +    +A K+F  +  S +KP+ F  +S++   +     
Sbjct: 348 WNAMISGYAQIMDSAKDDLHARSRGFQALKLFRDLVRSELKPDLFTFSSILSVCSAMMAL 407

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228
             GE IHA   K G  SD +V +ALV+MY + G +   ++ F  +  +  V+W ++ S +
Sbjct: 408 EQGEQIHANTIKTGCLSDVVVNSALVNMYNKCGSIECATKAFVEMPTRTPVTWTSMISGY 467

Query: 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVG-----FGKQLHAHTIKHS 283
             +      +++F  M+L G +PN  TF+ +L ACS    V      F    + + I+  
Sbjct: 468 SQHGRSQDAIQLFEDMVLSGARPNEITFVSLLSACSYAGLVEEAERYFDMMRNEYHIEPL 527

Query: 284 LDGNHVVGTSLVDMYDKSGCLEDA 307
           +D        +VDM+ + G L+DA
Sbjct: 528 VDHYGC----MVDMFVRLGRLDDA 547



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 112/239 (46%), Gaps = 3/239 (1%)

Query: 230 DYESPDQGL--RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGN 287
           ++ESP + L  +    ML  G       ++ +L  C     +G  + LH H +K     +
Sbjct: 51  EHESPPRPLDAQEAMGMLRDGQTVQSAMYVPLLHRCVEAGGLGAARALHGHMVKTGTAAD 110

Query: 288 HVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL 347
             V TSLV++Y +     DA   FD + +K++  +TA+IT +    E  +AL+ F +M  
Sbjct: 111 MFVATSLVNVYMRCASSRDARRLFDGMPDKNVVTWTALITGHTLNSEPALALEVFVEMLE 170

Query: 348 EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
            G   + +TL   L+ CS    +  G+ +H  ++K G      +  +L  +Y K G ++ 
Sbjct: 171 LGRYPSHYTLGGMLSACSAARRIDLGQQVHGYSIKYGADTITSMGNSLCRLYCKSGDLES 230

Query: 408 AEAVFKGSALRDTASWNMMIGGYVK-HGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC 465
               FKG+  ++  +W  MI    +     +  L  F  ML+ G +P+E T   V+S C
Sbjct: 231 GLRAFKGTPDKNVITWTTMISSCAEDENYLDLGLSLFLDMLEGGVMPNEFTLTSVMSLC 289



 Score = 45.4 bits (106), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 29/135 (21%), Positives = 62/135 (45%), Gaps = 6/135 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A + F  MP    V+W ++++GY++ G  Q  + LF  M     + ++ +  ++L  
Sbjct: 442 IECATKAFVEMPTRTPVTWTSMISGYSQHGRSQDAIQLFEDMVLSGARPNEITFVSLLSA 501

Query: 61  FANSGYIKAGQVVHAM---AIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPD 116
            + +G ++  +    M      +   +D +  C +VDM+ + G  D+A     R   +P+
Sbjct: 502 CSYAGLVEEAERYFDMMRNEYHIEPLVDHY-GC-MVDMFVRLGRLDDAFSFIKRTGFEPN 559

Query: 117 VVAWGAIITCLDQQG 131
              W +++      G
Sbjct: 560 EAIWSSLVAGCRSHG 574


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 188/602 (31%), Positives = 305/602 (50%), Gaps = 65/602 (10%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           LA+++F+ MP  ++VSWN +++G     + +    LF  M + +      S + +L G+A
Sbjct: 98  LARQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDV----VSWNAMLSGYA 153

Query: 63  NSGYIK-AGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
            +GY+K A ++   M  +   + +  L+      Y + G  ++A ++F    D ++++W 
Sbjct: 154 QNGYVKEAKEIFDEMPCKNSISWNGMLAA-----YVQNGRIEDARRLFESKADWELISWN 208

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD----QRCGESIHAV 177
            ++    ++    +A  IF+ M E     ++    +++    + G+    QR  E     
Sbjct: 209 CMMGGYVKRNRLVDARGIFDRMPER----DEVSWNTMISGYAQNGELLEAQRLFEESPV- 263

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
                   D     A+VS Y++NG +    RVF+ +  ++SVSWNA+ + +   +  DQ 
Sbjct: 264 -------RDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQA 316

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
             +F  M                  C ++S                         +++  
Sbjct: 317 RELFEAM-----------------PCQNVSS----------------------WNTMITG 337

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y ++G +  A   FD +  +D  ++ AII  YAQ+G  E AL  F +M+ +G + N  T 
Sbjct: 338 YAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTF 397

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
            S L+ C+ +A L  G+ +H   VK G     +V  AL+ MY KCG+IDDA  VF+G   
Sbjct: 398 TSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEE 457

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           ++  SWN MI GY +HG G++AL  F  M   G +PD++T V VLSACSH GL+++G ++
Sbjct: 458 KEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEY 517

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F S+ + YGIT   KH+ CMID+LGRAG+  + +N +      P+A  W  LLGA   HG
Sbjct: 518 FYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHG 577

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           N EL EK A+ + E+EP     YV  S++ A  GRW D   +R  +  +G+KK P  SW+
Sbjct: 578 NTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWV 637

Query: 598 EV 599
           EV
Sbjct: 638 EV 639



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/489 (25%), Positives = 227/489 (46%), Gaps = 37/489 (7%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM------------------ 42
           +  A+ +F  MPE +VVSWNA+L+GYA++G  ++   +F  M                  
Sbjct: 127 LRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQN 186

Query: 43  ---KDMEKKF-SKFSLSTVLKGFANSGYIKAGQVVHAMAI--RLGCALDKFLSCSLVDMY 96
              +D  + F SK     +       GY+K  ++V A  I  R+    D+    +++  Y
Sbjct: 187 GRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMP-ERDEVSWNTMISGY 245

Query: 97  SKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLT 156
           ++ G    A ++F      DV  W A+++   Q G   EA ++F+ M E +      ++ 
Sbjct: 246 AQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIA 305

Query: 157 SLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ 216
             V+   +  DQ   E   A+ C+     +    N +++ Y +NG ++     F+ +  +
Sbjct: 306 GYVQC--KRMDQ-ARELFEAMPCQ-----NVSSWNTMITGYAQNGDIAQARNFFDRMPQR 357

Query: 217 DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLH 276
           DS+SW A+ + +      ++ L +F +M   G + N  TF   L  C+ ++ +  GKQ+H
Sbjct: 358 DSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVH 417

Query: 277 AHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAE 336
              +K  L+    VG +L+ MY K G ++DA + F+ +  K++ ++  +I  YA+ G  +
Sbjct: 418 GRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGK 477

Query: 337 MALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTAL 395
            AL  F  M+  GI  ++ T+   L+ CS    +  G    +S+    G   +    T +
Sbjct: 478 EALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCM 537

Query: 396 VAMYAKCGSIDDAEAVFKGSALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPD 454
           + +  + G +DDA+ + K      D A+W  ++G    HG  E   +A +M+ +    PD
Sbjct: 538 IDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFE--MEPD 595

Query: 455 EITFVVVLS 463
                V+LS
Sbjct: 596 NSGMYVLLS 604



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/395 (23%), Positives = 164/395 (41%), Gaps = 43/395 (10%)

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIFNLM-RESSVKPN----------QFVLTSLVRAT 162
           D D+V W   IT   + G C  A ++FN M R SS+  N          +F L   +   
Sbjct: 46  DADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEK 105

Query: 163 TETGDQRCGESIHAVICKYGF------------ESDTLVGNALVSMYMENGRVSYGSRVF 210
             T D      + +   +Y              E D +  NA++S Y +NG V     +F
Sbjct: 106 MPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIF 165

Query: 211 EAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVG 270
           + +  ++S+SWN + + +      +   R+F          +   + +I   C     V 
Sbjct: 166 DEMPCKNSISWNGMLAAYVQNGRIEDARRLF---------ESKADWELISWNCMMGGYVK 216

Query: 271 FGKQLHAHTIKHSL-DGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSY 329
             + + A  I   + + + V   +++  Y ++G L +A   F+    +D+F +TA+++ Y
Sbjct: 217 RNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGY 276

Query: 330 AQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR-LLHSIAVKTGHLLD 388
            Q G  + A + F  M     + N  +  + + G      +   R L  ++  +     +
Sbjct: 277 VQNGMLDEARRVFDGM----PEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQ-----N 327

Query: 389 MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
           +     ++  YA+ G I  A   F     RD+ SW  +I GY + G GE+AL  F  M  
Sbjct: 328 VSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKR 387

Query: 449 EGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           +G   +  TF   LS C+ +  +E GK+    + K
Sbjct: 388 DGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVK 422


>gi|225450537|ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570 [Vitis vinifera]
          Length = 607

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 176/513 (34%), Positives = 268/513 (52%), Gaps = 2/513 (0%)

Query: 88  LSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESS 147
           L+ +L+  Y   GL   A  +F  + + DVVAW  +I           A  +F  M    
Sbjct: 45  LATTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMNEE 104

Query: 148 VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENG-RVSYG 206
           + PN F ++S+++A         G  +H +  K+G +    V NAL+ MY      +   
Sbjct: 105 LDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDA 164

Query: 207 SRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266
             VF  I  ++ VSW  L + +   +    GLR+F QMLL+  + N  +F + ++AC+S+
Sbjct: 165 CMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSI 224

Query: 267 SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
               FG+QLHA   KH  + N  V  S++DMY +  C  +A   F  +  +DL  +  +I
Sbjct: 225 GSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLI 284

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL 386
             Y ++   E +L  F  M  EG   N FT  S +  C+ +A L  G+ +H   ++ G  
Sbjct: 285 AGYERSNPTE-SLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLD 343

Query: 387 LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM 446
            ++ +S AL+ MY+KCG+I D+  VF G + RD  SW  M+ GY  HG GE+A+E F  M
Sbjct: 344 GNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKM 403

Query: 447 LDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGK 506
           +  G  PD + F+ +LSACSH GL++EG ++F  +   Y I+P  + + C++D+LGRAGK
Sbjct: 404 VRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGK 463

Query: 507 FTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDI 566
             E    I      P+  VW   LGAC  H    L +  A ++L+L P M   YV  S+I
Sbjct: 464 VEEAYELIESMPFKPDECVWGPFLGACKAHTFPNLGKLAAHRILDLRPHMAGTYVMLSNI 523

Query: 567 SATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            A  G+W +F+ +R L+   G KKE   SW+EV
Sbjct: 524 YAADGKWGEFARLRKLMKRMGNKKETGRSWVEV 556



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 130/450 (28%), Positives = 224/450 (49%), Gaps = 8/450 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F  MPE +VV+W  ++ GY    +      +FC M + E   + F++S+VLK    
Sbjct: 62  ARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMNEELDPNAFTISSVLKACKG 121

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSC--SLVDMYSKCGLA-DNALKVFYRIKDPDVVAW 120
              +  G++VH +AI+ G  LD F+    +L+DMY+ C ++ D+A  VF  I   + V+W
Sbjct: 122 MKCLSYGRLVHGLAIKHG--LDGFIYVDNALMDMYATCCVSMDDACMVFRGIHLKNEVSW 179

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I     +       ++F  M    V+ N F  +  VRA T  G    GE +HA + K
Sbjct: 180 TTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTK 239

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +GFES+  V N+++ MY      S  +R F  +  +D ++WN L + ++   +P + L +
Sbjct: 240 HGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGYER-SNPTESLYV 298

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  M  +GF PN  TF  I+ AC++L+ +  G+Q+H   I+  LDGN  +  +L+DMY K
Sbjct: 299 FSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYSK 358

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G + D+   F  ++ +DL ++TA++  Y   G  E A++ F KM   GI+ +     + 
Sbjct: 359 CGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAI 418

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHL-LDMFVSTALVAMYAKCGSIDDAEAVFKGSALR- 418
           L+ CS    +  G     + V   ++  D  +   +V +  + G +++A  + +    + 
Sbjct: 419 LSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFKP 478

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
           D   W   +G    H        A   +LD
Sbjct: 479 DECVWGPFLGACKAHTFPNLGKLAAHRILD 508



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 159/326 (48%), Gaps = 7/326 (2%)

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
           +++   L+  Y   G +     +F+ +  +D V+W  + + +    +      +F +M+ 
Sbjct: 43  SVLATTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMN 102

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC--L 304
           +   PN  T   +LKAC  +  + +G+ +H   IKH LDG   V  +L+DMY  + C  +
Sbjct: 103 EELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMY-ATCCVSM 161

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
           +DA + F  +  K+  ++T +I  Y    +    L+ FR+M LE ++ N F+ +  +  C
Sbjct: 162 DDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRAC 221

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
           + + +   G  LH+   K G   ++ V  +++ MY +C    +A   F     RD  +WN
Sbjct: 222 TSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWN 281

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKK 483
            +I GY +    E +L  F MM  EG+ P+  TF  +++AC+ +  +  G++ H   I++
Sbjct: 282 TLIAGYERSNPTE-SLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRR 340

Query: 484 IYGITPTIKHFACMIDILGRAGKFTE 509
             G+   +     +ID+  + G   +
Sbjct: 341 --GLDGNLALSNALIDMYSKCGNIAD 364



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 154/318 (48%), Gaps = 2/318 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A  VF+ +   N VSW  L+ GY    DG   + +F  M   E + + FS S  ++ 
Sbjct: 161 MDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRA 220

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             + G    G+ +HA   + G   +  +  S++DMY +C     A + FY +   D++ W
Sbjct: 221 CTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITW 280

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I   ++     E+  +F++M      PN F  TS++ A        CG+ IH  I +
Sbjct: 281 NTLIAGYERSN-PTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIR 339

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G + +  + NAL+ MY + G ++   +VF  ++ +D VSW A+   +  +   ++ + +
Sbjct: 340 RGLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVEL 399

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTI-KHSLDGNHVVGTSLVDMYD 299
           F +M+  G +P+   F+ IL ACS    V  G +     +  +++  +  +   +VD+  
Sbjct: 400 FDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLG 459

Query: 300 KSGCLEDAGVAFDSLANK 317
           ++G +E+A    +S+  K
Sbjct: 460 RAGKVEEAYELIESMPFK 477



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 121/248 (48%), Gaps = 3/248 (1%)

Query: 286 GNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM 345
           G  V+ T+L+  Y   G + +A   FD +  +D+ A+T +I  Y        A   F +M
Sbjct: 41  GPSVLATTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEM 100

Query: 346 RLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG-S 404
             E +  N FT++S L  C  +  L+ GRL+H +A+K G    ++V  AL+ MYA C  S
Sbjct: 101 MNEELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVS 160

Query: 405 IDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
           +DDA  VF+G  L++  SW  +I GY     G   L  FR ML E    +  +F + + A
Sbjct: 161 MDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRA 220

Query: 465 CSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNAL 524
           C+ +G    G++  +++ K +G    +     ++D+  R   F+E   +  E     + +
Sbjct: 221 CTSIGSHTFGEQLHAAVTK-HGFESNLPVMNSILDMYCRCSCFSEANRYFYEMN-QRDLI 278

Query: 525 VWENLLGA 532
            W  L+  
Sbjct: 279 TWNTLIAG 286



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 125/259 (48%), Gaps = 5/259 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A R F  M + ++++WN L+ GY E  +  + +++F  M+      + F+ ++++   A 
Sbjct: 265 ANRYFYEMNQRDLITWNTLIAGY-ERSNPTESLYVFSMMESEGFSPNCFTFTSIMAACAT 323

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
             ++  GQ +H   IR G   +  LS +L+DMYSKCG   ++ +VF  +   D+V+W A+
Sbjct: 324 LAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAM 383

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG-ESIHAVICKYG 182
           +      G  +EA ++F+ M  S ++P++ V  +++ A +  G    G      ++  Y 
Sbjct: 384 MIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYN 443

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-DSVSWNALFSRFQDYESPDQGLRIF 241
              D  +   +V +    G+V     + E++  + D   W       + +  P+ G    
Sbjct: 444 ISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFKPDECVWGPFLGACKAHTFPNLGKLAA 503

Query: 242 YQMLLKGFKPNMCTFIVIL 260
           +++L    +P+M    V+L
Sbjct: 504 HRIL--DLRPHMAGTYVML 520


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 160/430 (37%), Positives = 245/430 (56%), Gaps = 1/430 (0%)

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
           G  +HA I +  F  D ++GN L++MY + G +    +VFE +  +D V+W  L S +  
Sbjct: 79  GRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQ 138

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
           ++ P   L  F QML  G+ PN  T   ++KA ++      G QLH   +K   D N  V
Sbjct: 139 HDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHV 198

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
           G++L+D+Y + G ++DA + FD+L +++  ++ A+I  +A+    E AL+ F+ M  +G 
Sbjct: 199 GSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGF 258

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
           + + F+ AS    CS    L  G+ +H+  +K+G  L  F    L+ MYAK GSI DA  
Sbjct: 259 RPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARK 318

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           +F   A RD  SWN ++  Y +HG G++A+  F  M   G  P+EI+F+ VL+ACSH GL
Sbjct: 319 IFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGL 378

Query: 471 IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
           ++EG  ++  +KK  GI P   H+  ++D+LGRAG       FI E  + P A +W+ LL
Sbjct: 379 LDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALL 437

Query: 531 GACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKK 590
            AC  H N EL    AE + EL+P     +V   +I A+ GRWND + VR  +   G+KK
Sbjct: 438 NACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKK 497

Query: 591 EPSCSWIEVD 600
           EP+CSW+E++
Sbjct: 498 EPACSWVEIE 507



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 115/380 (30%), Positives = 192/380 (50%), Gaps = 1/380 (0%)

Query: 55  STVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
           +T+LK       +  G++VHA  ++     D  +  +L++MY+KCG  + A KVF ++  
Sbjct: 64  NTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQ 123

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
            D V W  +I+   Q     +A   FN M      PN+F L+S+++A        CG  +
Sbjct: 124 RDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQL 183

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H    K GF+S+  VG+AL+ +Y   G +     VF+A+  ++ VSWNAL +        
Sbjct: 184 HGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGT 243

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
           ++ L +F  ML  GF+P+  ++  +  ACSS   +  GK +HA+ IK         G +L
Sbjct: 244 EKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTL 303

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           +DMY KSG + DA   FD LA +D+ ++ +++T+YAQ G  + A+  F +MR  GI+ NE
Sbjct: 304 LDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNE 363

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            +  S L  CS    L  G   + +  K G + + +    +V +  + G ++ A    + 
Sbjct: 364 ISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEE 423

Query: 415 SALRDTAS-WNMMIGGYVKH 433
             +  TA+ W  ++     H
Sbjct: 424 MPIEPTAAIWKALLNACRMH 443



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 117/483 (24%), Positives = 208/483 (43%), Gaps = 65/483 (13%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A++VF+ MP+ + V+W  L++GY++       +  F  M       ++F+LS+V+K 
Sbjct: 111 LEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKA 170

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A       G  +H   ++ G   +  +  +L+D+Y++ GL D+A  VF  ++  + V+W
Sbjct: 171 AAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSW 230

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    ++   ++A ++F  M     +P+ F   SL  A + TG    G+ +HA + K
Sbjct: 231 NALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIK 290

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G +     GN L+ MY ++G +    ++F+ +A +D VSWN+L + +  +    + +  
Sbjct: 291 SGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWW 350

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS--LDGNHVVGTSLVDMY 298
           F +M   G +PN  +F+ +L ACS                 HS  LD     G    ++ 
Sbjct: 351 FEEMRRVGIRPNEISFLSVLTACS-----------------HSGLLDE----GWHYYELM 389

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G + +A            + Y  ++    +AG+   AL+   +M +E   +      
Sbjct: 390 KKDGIVPEA------------WHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAA---IWK 434

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLL-----DMFVSTALVAMYAKCGSIDDAEAVFK 413
           + LN C        G      A    H+      D      L  +YA  G  +DA  V K
Sbjct: 435 ALLNACRMHKNTELG------AYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRK 488

Query: 414 -----GSALRDTASW-------NMMIGGYVKHGLGEKALEAFRMMLDE----GYVPDEIT 457
                G       SW       +M +    +H   E+    +  +L +    GYVPD   
Sbjct: 489 KMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSH 548

Query: 458 FVV 460
            +V
Sbjct: 549 VIV 551



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 144/285 (50%), Gaps = 8/285 (2%)

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
           +  +LK C+    +  G+ +HAH ++     + V+G +L++MY K G LE+A   F+ + 
Sbjct: 63  YNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMP 122

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRL 375
            +D   +T +I+ Y+Q      AL  F +M   G   NEFTL+S +   +       G  
Sbjct: 123 QRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQ 182

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           LH   VK G   ++ V +AL+ +Y + G +DDA+ VF     R+  SWN +I G+ +   
Sbjct: 183 LHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSG 242

Query: 436 GEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK-KHFSSIKKIYGITPTIKHF 494
            EKALE F+ ML +G+ P   ++  +  ACS  G +E+GK  H   IK    +      F
Sbjct: 243 TEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVA----F 298

Query: 495 A--CMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           A   ++D+  ++G   +    I +     + + W +LL A + HG
Sbjct: 299 AGNTLLDMYAKSGSIHDARK-IFDRLAKRDVVSWNSLLTAYAQHG 342


>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 181/562 (32%), Positives = 296/562 (52%), Gaps = 11/562 (1%)

Query: 46  EKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNA 105
            + +  FSLS +     N  + ++   + + AI  G   D  +S  L+  YS     D A
Sbjct: 24  RQSYHNFSLSLL----QNLSHPRSFNQILSHAIASGVFRDPVVSSKLL-YYSLSHDHDFA 78

Query: 106 LK--VFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATT 163
               +F++I  P+V +W  +     +     E   ++NLM  +   P+ +    +++A  
Sbjct: 79  FSRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACA 138

Query: 164 ETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH--QDSVSW 221
                  G  IH+   K G   D  V NAL+S +   G V     VF+ +    +D VSW
Sbjct: 139 RLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSW 198

Query: 222 NALFSRFQDYESPDQGLRIFYQMLLKG-FKPNMCTFIVILKACSSLSDVGFGKQLHAHTI 280
           N++ S +      +  L++F+++L  G   P+  T +  L  C  L  +  GK++H    
Sbjct: 199 NSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFT 258

Query: 281 KHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALK 340
                 +  VG+SL+DMY K G +EDA   FD + +++   +T++I  YAQ+   + A++
Sbjct: 259 GSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIE 318

Query: 341 CFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYA 400
            FR+M++ G  ++  T+A  L+ C     LA GR +H    +    +D+    AL+ MY+
Sbjct: 319 LFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYS 378

Query: 401 KCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF-RMMLDEGYVPDEITFV 459
           KCG I  A  +F G    D  SW+ +I G   +G  +KAL  F +M +     P+EITF+
Sbjct: 379 KCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFL 438

Query: 460 VVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKL 519
            VL AC+H G +++G  +F+++ +IY +TP I+H+ CM+D+LGRA    E E FI    +
Sbjct: 439 GVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPI 498

Query: 520 TPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGV 579
            P+ ++W +LL AC  HGNIEL E  A+++ ELEP+     V  S++ A+  RW D   V
Sbjct: 499 QPDVVIWRSLLFACRNHGNIELAEFAAKQIEELEPRRCGARVLLSNVYASASRWGDVKRV 558

Query: 580 RALLSSQGIKKEPSCSWIEVDG 601
           R  +++Q IKK+P CS++E+DG
Sbjct: 559 RKDMATQRIKKQPGCSFVEIDG 580



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 183/367 (49%), Gaps = 4/367 (1%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
            ++ +F  + + NV SWN +   Y+ S    + + L+  M         +S   VLK  A
Sbjct: 79  FSRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACA 138

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD--PDVVAW 120
               +  G+ +H+  ++LG  LD F+  +L+  +S CG  + A  VF  +     DVV+W
Sbjct: 139 RLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSW 198

Query: 121 GAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            ++I+   Q    + A K+F  L+ + S+ P++  L S +      G    G+ IH +  
Sbjct: 199 NSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFT 258

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
             GF  D  VG++L+ MY + G++    +VF+ I H+++V W ++ + +   +   + + 
Sbjct: 259 GSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIE 318

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F +M + GF  +  T   +L AC     +  G+ +H +  ++S++ +     +L+ MY 
Sbjct: 319 LFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYS 378

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL-EGIKSNEFTLA 358
           K G ++ A   F  L   D+F+++A+I+  A  GE++ AL  F +M +   I+ NE T  
Sbjct: 379 KCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFL 438

Query: 359 SCLNGCS 365
             L  C+
Sbjct: 439 GVLCACN 445



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 1/167 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A++VF  +P  N V W +++ GYA+S   ++ + LF  M+         +++ VL  
Sbjct: 282 IEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSA 341

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             + G +  G+ +H    R    +D     +L+ MYSKCG    AL++F+ +  PD+ +W
Sbjct: 342 CGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSW 401

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRE-SSVKPNQFVLTSLVRATTETG 166
            A+I+ L   G   +A  +F+ M   S ++PN+     ++ A    G
Sbjct: 402 SAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGG 448



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 67/136 (49%), Gaps = 7/136 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDM-EKKFSKFSLSTVLK 59
           ++ A  +F  + + ++ SW+A+++G A +G+  K +HLF  M+ + + + ++ +   VL 
Sbjct: 383 IQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLC 442

Query: 60  GFANSGYIKAG-QVVHAMA--IRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DP 115
              + G++  G    +AM     L   ++ +  C +VD+  +  L   A K    +   P
Sbjct: 443 ACNHGGFVDKGLYYFNAMTQIYNLTPGIEHY-GC-MVDLLGRANLLVEAEKFIRTLPIQP 500

Query: 116 DVVAWGAIITCLDQQG 131
           DVV W +++      G
Sbjct: 501 DVVIWRSLLFACRNHG 516


>gi|302810303|ref|XP_002986843.1| hypothetical protein SELMODRAFT_124816 [Selaginella moellendorffii]
 gi|300145497|gb|EFJ12173.1| hypothetical protein SELMODRAFT_124816 [Selaginella moellendorffii]
          Length = 845

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 183/572 (31%), Positives = 298/572 (52%), Gaps = 9/572 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  VF  M   +V SWNA++   A+ G   + + LF  M   E    K +L   L  
Sbjct: 275 LDRAHDVFHRMKRWDVKSWNAMVAALAQHGFSSEALELFRRMPS-EVAVDKTTLVIALST 333

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    ++ G+ +H+   RLG   D     +LV MYS+CG    A +VF  I   +VV+W
Sbjct: 334 CAAPESLEDGKSIHSRVARLGLETDVVAGTALVTMYSRCGDLGEARRVFDGILGKNVVSW 393

Query: 121 GAIITCLDQ-QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
             +I    + +     A +IF LM    V+P +   T+ +   +    Q  G+ +H  I 
Sbjct: 394 NNMIAAYGRDESLHSRALEIFRLMLLDGVRPTR---TTALNVVSAVECQSVGKQLHGWIV 450

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
             G  SD+ +G+ALV+MY   G +    RVFE I  +D  +WNA+      +  P + L 
Sbjct: 451 DTGLYSDSFIGSALVNMYERTGSLGDARRVFEKIIERDVFAWNAIVGVCVGHGQPREALE 510

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
            F +MLL+G   N  TF++ L A S    V +G++LH    +  L+ ++ V  +L+ MY 
Sbjct: 511 WFSRMLLEGASGNRATFLLALSAVSP-DRVSYGRKLHGLIAESGLEADNNVANALISMYA 569

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           +   LEDA   FD L +K + ++T++I +    G  + A+  F++M LE    +  T  +
Sbjct: 570 RCKSLEDARNTFDRLEDKSIVSWTSVIAACVDLGSCQEAIDLFQRMELE---PDRVTFTT 626

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L  C+ V+    G+L+HS A + G   ++FV+TAL+ M++K G++ +A  +F+      
Sbjct: 627 VLEACTIVSAHREGKLVHSRARELGLESNVFVATALIHMHSKFGNLGEARRIFEAVEAPT 686

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
            A WN M+GGY + G  +  ++ F  M   G  PD ITF+ V+SACSH GL+E+G + F+
Sbjct: 687 LACWNAMLGGYAQTGHSQSVIDFFHAMQQRGVAPDHITFLAVVSACSHAGLVEKGARTFA 746

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           S+   YG+   ++ + C+ID+L RAG+  E  +F+      P+ + W+ LL AC   G++
Sbjct: 747 SMGPDYGVGHGLEDYGCLIDLLARAGQLEEAYDFLQGMPCGPSDVTWKTLLAACKIQGDV 806

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQG 571
                 A  ++E EP   + +V  S +S+  G
Sbjct: 807 RRGSAAARSVIEREPYGAAAFVELSYMSSIAG 838



 Score =  244 bits (624), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 166/568 (29%), Positives = 278/568 (48%), Gaps = 27/568 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A R F+ MP  +V+SW  ++  YA +G   +    +  M       +  +   VL   ++
Sbjct: 180 AARFFQRMPRRDVISWTGMVTAYARNGHIAEAFGYYLRMLLEGVVPNNITFLAVLAACSS 239

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +   +   +V+   +      D  ++ + ++M+SKCG  D A  VF+R+K  DV +W A+
Sbjct: 240 A---RDADLVYGNVVEAEWETDTMVANASINMFSKCGCLDRAHDVFHRMKRWDVKSWNAM 296

Query: 124 ITCLDQQGCCQEAAKIFNLM-RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +  L Q G   EA ++F  M  E +V     V+     A  E+ +   G+SIH+ + + G
Sbjct: 297 VAALAQHGFSSEALELFRRMPSEVAVDKTTLVIALSTCAAPESLED--GKSIHSRVARLG 354

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES-PDQGLRIF 241
            E+D + G ALV+MY   G +    RVF+ I  ++ VSWN + + +   ES   + L IF
Sbjct: 355 LETDVVAGTALVTMYSRCGDLGEARRVFDGILGKNVVSWNNMIAAYGRDESLHSRALEIF 414

Query: 242 YQMLLKGFKPNMCTFIVILKA--CSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
             MLL G +P   T + ++ A  C S+     GKQLH   +   L  +  +G++LV+MY+
Sbjct: 415 RLMLLDGVRPTRTTALNVVSAVECQSV-----GKQLHGWIVDTGLYSDSFIGSALVNMYE 469

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           ++G L DA   F+ +  +D+FA+ AI+      G+   AL+ F +M LEG   N  T   
Sbjct: 470 RTGSLGDARRVFEKIIERDVFAWNAIVGVCVGHGQPREALEWFSRMLLEGASGNRATFLL 529

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L+  SP   ++ GR LH +  ++G   D  V+ AL++MYA+C S++DA   F     + 
Sbjct: 530 ALSAVSP-DRVSYGRKLHGLIAESGLEADNNVANALISMYARCKSLEDARNTFDRLEDKS 588

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SW  +I   V  G  ++A++ F+ M  E   PD +TF  VL AC+ +    EGK   S
Sbjct: 589 IVSWTSVIAACVDLGSCQEAIDLFQRMELE---PDRVTFTTVLEACTIVSAHREGKLVHS 645

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
             +++ G+   +     +I +  + G   E    I E    P    W  +LG  +  G+ 
Sbjct: 646 RAREL-GLESNVFVATALIHMHSKFGNLGEARR-IFEAVEAPTLACWNAMLGGYAQTGH- 702

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDIS 567
                 ++ +++    M+   V P  I+
Sbjct: 703 ------SQSVIDFFHAMQQRGVAPDHIT 724



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 148/553 (26%), Positives = 265/553 (47%), Gaps = 17/553 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A RVF+ M + ++V W +++  + +  D  +    F  M+       + +  ++L    +
Sbjct: 82  ASRVFEQMLDRSMVLWTSMVTAFVDDEDVDRAWLFFFRMQLEGVLPDRVTFISILNACES 141

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G++VH + +      D  +  +L+ M +KC   D A + F R+   DV++W  +
Sbjct: 142 ---LAQGELVHRLIVDKNLESDVVIGNALMKMLAKCYDLDGAARFFQRMPRRDVISWTGM 198

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +T   + G   EA   +  M    V PN     +++ A +   D    + ++  + +  +
Sbjct: 199 VTAYARNGHIAEAFGYYLRMLLEGVVPNNITFLAVLAACSSARD---ADLVYGNVVEAEW 255

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E+DT+V NA ++M+ + G +     VF  +   D  SWNA+ +    +    + L +F +
Sbjct: 256 ETDTMVANASINMFSKCGCLDRAHDVFHRMKRWDVKSWNAMVAALAQHGFSSEALELFRR 315

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +    +  T ++ L  C++   +  GK +H+   +  L+ + V GT+LV MY + G 
Sbjct: 316 MPSE-VAVDKTTLVIALSTCAAPESLEDGKSIHSRVARLGLETDVVAGTALVTMYSRCGD 374

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAE-MALKCFRKMRLEGIKSNEFTLASCLN 362
           L +A   FD +  K++ ++  +I +Y +       AL+ FR M L+G++    T  + LN
Sbjct: 375 LGEARRVFDGILGKNVVSWNNMIAAYGRDESLHSRALEIFRLMLLDGVRP---TRTTALN 431

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
             S V   + G+ LH   V TG   D F+ +ALV MY + GS+ DA  VF+    RD  +
Sbjct: 432 VVSAVECQSVGKQLHGWIVDTGLYSDSFIGSALVNMYERTGSLGDARRVFEKIIERDVFA 491

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN ++G  V HG   +ALE F  ML EG   +  TF++ LSA S    +  G+K    I 
Sbjct: 492 WNAIVGVCVGHGQPREALEWFSRMLLEGASGNRATFLLALSAVSP-DRVSYGRKLHGLIA 550

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV-WENLLGACSWHGNIEL 541
           +  G+         +I +  R     +  N  T  +L   ++V W +++ AC   G+ + 
Sbjct: 551 E-SGLEADNNVANALISMYARCKSLEDARN--TFDRLEDKSIVSWTSVIAACVDLGSCQ- 606

Query: 542 DEKDAEKLLELEP 554
           +  D  + +ELEP
Sbjct: 607 EAIDLFQRMELEP 619



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 127/467 (27%), Positives = 225/467 (48%), Gaps = 29/467 (6%)

Query: 81  GCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIF 140
           G  LD F   S+V M+ KC    +A +VF ++ D  +V W +++T          A   F
Sbjct: 58  GILLDGFFGASVVRMFIKCRSIHDASRVFEQMLDRSMVLWTSMVTAFVDDEDVDRAWLFF 117

Query: 141 NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMEN 200
             M+   V P++    S++ A         GE +H +I     ESD ++GNAL+ M  + 
Sbjct: 118 FRMQLEGVLPDRVTFISILNACESLAQ---GELVHRLIVDKNLESDVVIGNALMKMLAKC 174

Query: 201 GRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVIL 260
             +   +R F+ +  +D +SW  + + +       +    + +MLL+G  PN  TF+ +L
Sbjct: 175 YDLDGAARFFQRMPRRDVISWTGMVTAYARNGHIAEAFGYYLRMLLEGVVPNNITFLAVL 234

Query: 261 KACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLF 320
            ACSS  D      ++ + ++   + + +V  + ++M+ K GCL+ A   F  +   D+ 
Sbjct: 235 AACSSARDADL---VYGNVVEAEWETDTMVANASINMFSKCGCLDRAHDVFHRMKRWDVK 291

Query: 321 AYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIA 380
           ++ A++ + AQ G +  AL+ FR+M  E +  ++ TL   L+ C+   +L +G+ +HS  
Sbjct: 292 SWNAMVAALAQHGFSSEALELFRRMPSE-VAVDKTTLVIALSTCAAPESLEDGKSIHSRV 350

Query: 381 VKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK-HGLGEKA 439
            + G   D+   TALV MY++CG + +A  VF G   ++  SWN MI  Y +   L  +A
Sbjct: 351 ARLGLETDVVAGTALVTMYSRCGDLGEARRVFDGILGKNVVSWNNMIAAYGRDESLHSRA 410

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSA--CSHMGLIEEGKKHFSSIKKIYGITPTIKHF--- 494
           LE FR+ML +G  P   T + V+SA  C  +G            K+++G       +   
Sbjct: 411 LEIFRLMLLDGVRPTRTTALNVVSAVECQSVG------------KQLHGWIVDTGLYSDS 458

Query: 495 ---ACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
              + ++++  R G   +    + E  +  +   W  ++G C  HG 
Sbjct: 459 FIGSALVNMYERTGSLGDARR-VFEKIIERDVFAWNAIVGVCVGHGQ 504



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/396 (29%), Positives = 195/396 (49%), Gaps = 15/396 (3%)

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
           S+++ I   G   D   G ++V M+++   +   SRVFE +  +  V W ++ + F D E
Sbjct: 49  SVYSSIQAQGILLDGFFGASVVRMFIKCRSIHDASRVFEQMLDRSMVLWTSMVTAFVDDE 108

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
             D+    F++M L+G  P+  TFI IL AC SL+    G+ +H   +  +L+ + V+G 
Sbjct: 109 DVDRAWLFFFRMQLEGVLPDRVTFISILNACESLAQ---GELVHRLIVDKNLESDVVIGN 165

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           +L+ M  K   L+ A   F  +  +D+ ++T ++T+YA+ G    A   + +M LEG+  
Sbjct: 166 ALMKMLAKCYDLDGAARFFQRMPRRDVISWTGMVTAYARNGHIAEAFGYYLRMLLEGVVP 225

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
           N  T  + L  CS   +  +  L++   V+     D  V+ A + M++KCG +D A  VF
Sbjct: 226 NNITFLAVLAACS---SARDADLVYGNVVEAEWETDTMVANASINMFSKCGCLDRAHDVF 282

Query: 413 KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE 472
                 D  SWN M+    +HG   +ALE FR M  E  V D+ T V+ LS C+    +E
Sbjct: 283 HRMKRWDVKSWNAMVAALAQHGFSSEALELFRRMPSEVAV-DKTTLVIALSTCAAPESLE 341

Query: 473 EGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
           +GK   S + ++ G+   +     ++ +  R G   E    + +  L  N + W N++ A
Sbjct: 342 DGKSIHSRVARL-GLETDVVAGTALVTMYSRCGDLGEARR-VFDGILGKNVVSWNNMIAA 399

Query: 533 CSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISA 568
              +G    DE    + LE+   M  + V P+  +A
Sbjct: 400 ---YGR---DESLHSRALEIFRLMLLDGVRPTRTTA 429



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 2/110 (1%)

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           +N C+    L     ++S     G LLD F   ++V M+ KC SI DA  VF+    R  
Sbjct: 35  VNLCAERKLLHEATSVYSSIQAQGILLDGFFGASVVRMFIKCRSIHDASRVFEQMLDRSM 94

Query: 421 ASWNMMIGGYVKHGLGEKA-LEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
             W  M+  +V     ++A L  FRM L EG +PD +TF+ +L+AC  + 
Sbjct: 95  VLWTSMVTAFVDDEDVDRAWLFFFRMQL-EGVLPDRVTFISILNACESLA 143


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 173/537 (32%), Positives = 280/537 (52%), Gaps = 32/537 (5%)

Query: 95  MYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFV 154
           +YS   L  ++L++F  I  P  +AW ++I C    G   ++   F  M  S + P+  V
Sbjct: 49  IYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNV 108

Query: 155 LTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYM------ENGRVSYGS- 207
             S++++     D   GES+H  I + G + D   GNAL++MY       E+GR   G+ 
Sbjct: 109 FPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAG 168

Query: 208 -------------------------RVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
                                    ++FE +  +D VSWN + +        ++ LR+  
Sbjct: 169 EVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIR 228

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M     KP+  T   +L   +   D+  GK++H  +I+  LD +  V +SL+DMY K  
Sbjct: 229 EMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCT 288

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            + D+   F  L  +D  ++ +II    Q G  +  L+ FR+M +  IK   ++ +S + 
Sbjct: 289 RVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMP 348

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+ + TL  G+ LH    + G   ++F++++LV MYAKCG+I  A+ +F    LRD  S
Sbjct: 349 ACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVS 408

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           W  MI G   HG    A+E F  M  EG  P+ + F+ VL+ACSH GL++E  K+F+S+ 
Sbjct: 409 WTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMT 468

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           + +GI P ++H+A + D+LGRAG+  E  +FI    + P   +W  LL AC  H NI++ 
Sbjct: 469 RDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMA 528

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           EK A ++LE++P     Y+  ++I +   RW + +  RA +   GI+K P+CSWIEV
Sbjct: 529 EKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEV 585



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 137/260 (52%)

Query: 5   KRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANS 64
           +++F+ MPE ++VSWN ++ G A +G  ++ + +   M     K   F+LS+VL   A +
Sbjct: 193 RKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAEN 252

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
             I  G+ +H  +IR G   D +++ SL+DMY+KC    ++ +VF  + + D ++W +II
Sbjct: 253 VDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSII 312

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
               Q G   E  + F  M  + +KP  +  +S++ A         G+ +H  I + GF+
Sbjct: 313 AGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFD 372

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
            +  + ++LV MY + G +    ++F+ +  +D VSW A+      +      + +F QM
Sbjct: 373 ENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQM 432

Query: 245 LLKGFKPNMCTFIVILKACS 264
             +G KPN   F+ +L ACS
Sbjct: 433 ETEGIKPNHVAFMAVLTACS 452



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 84/161 (52%)

Query: 6   RVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSG 65
           RVF  + E + +SWN+++ G  ++G   + +  F  M   + K   +S S+++   A+  
Sbjct: 295 RVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLT 354

Query: 66  YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT 125
            +  G+ +H    R G   + F++ SLVDMY+KCG    A ++F R++  D+V+W A+I 
Sbjct: 355 TLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIM 414

Query: 126 CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
                G   +A ++F  M    +KPN     +++ A +  G
Sbjct: 415 GCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGG 455


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 175/600 (29%), Positives = 309/600 (51%), Gaps = 2/600 (0%)

Query: 1   MELAKRVFKSMPEL-NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           M  A+RVF +M    NV  WN ++ GYA+ G+ ++ + LF  M ++     + ++S +LK
Sbjct: 366 MASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLK 425

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
                   + G V H   ++LG      +  +L+  Y+K  +  +A+ VF R+   D ++
Sbjct: 426 CITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTIS 485

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W ++I+     G   EA ++F  M     + +   L S++ A  ++     G  +H    
Sbjct: 486 WNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSV 545

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K G   +T + NAL+ MY         +++F ++  ++ VSW A+ + +      D+   
Sbjct: 546 KTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAG 605

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +  +M+L G +P++      L A +    +  GK +H +TI++ ++    V  +L++MY 
Sbjct: 606 LLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYV 665

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K   +E+A + FD + NKD+ ++  +I  Y++      +   F  M L+  + N  T+  
Sbjct: 666 KCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQ-FRPNAVTMTC 724

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L   + +++L  GR +H+ A++ G L D + S ALV MY KCG++  A  +F     ++
Sbjct: 725 ILPAAASISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKN 784

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SW +MI GY  HG G+ A+  F  M   G  PD  +F  +L AC H GL  EG++ F 
Sbjct: 785 LISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFK 844

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           +++K Y I P +KH+ C++D+L R G   E   FI    + P++ +W +LL  C  H N+
Sbjct: 845 AMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSIWVSLLHGCRIHKNV 904

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +L EK A+K+ +LEP+    YV  ++I A   RW     ++  +  +G+++    SWIEV
Sbjct: 905 KLAEKVADKVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGYSWIEV 964



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 142/549 (25%), Positives = 261/549 (47%), Gaps = 16/549 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A RVF SM   + +SWN+++ G   +G     + LF  M     + S  ++ +VL  
Sbjct: 255 MEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPA 314

Query: 61  FANSGYIKAGQVVHAMAIRLGCAL----------DKFLSCSLVDMYSKCGLADNALKVFY 110
            A  GY   G+ VH  +++ G             D  L   LV MY KCG   +A +VF 
Sbjct: 315 CAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFD 374

Query: 111 RIKDP-DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
            +    +V  W  I+    + G  +E+  +F  M E  + P++  ++ L++  T     R
Sbjct: 375 AMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCAR 434

Query: 170 CGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
            G   H  I K GF +   V NAL+S Y ++  +     VF  +  QD++SWN++ S   
Sbjct: 435 DGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCS 494

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
                 + + +F +M  +G + +  T + +L AC+       G+ +H +++K  L G   
Sbjct: 495 SNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETS 554

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           +  +L+DMY      +     F S+  K++ ++TA+ITSY +AG  +      ++M L+G
Sbjct: 555 LANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDG 614

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           I+ + F + S L+  +   +L  G+ +H   ++ G    + V+ AL+ MY KC ++++A 
Sbjct: 615 IRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEAR 674

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
            +F     +D  SWN +IGGY ++    ++   F  ML + + P+ +T   +L A + + 
Sbjct: 675 LIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQ-FRPNAVTMTCILPAAASIS 733

Query: 470 LIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWEN 528
            +E G++ H  ++++  G          ++D+  + G    +   + +     N + W  
Sbjct: 734 SLERGREIHAYALRR--GFLEDSYASNALVDMYVKCGALL-VARVLFDRLTKKNLISWTI 790

Query: 529 LLGACSWHG 537
           ++     HG
Sbjct: 791 MIAGYGMHG 799



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 134/545 (24%), Positives = 257/545 (47%), Gaps = 17/545 (3%)

Query: 4   AKRVFKSMPE--LNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           A+ VF  MP    +V  W +L++ YA++GD Q+ + LF  M+         ++S VLK  
Sbjct: 155 ARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCV 214

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           ++ G +  G+V+H +  +LG      ++ +L+ +YS+CG  ++A +VF  +   D ++W 
Sbjct: 215 SSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWN 274

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK- 180
           ++I      G    A  +F+ M     + +   + S++ A    G    G+++H    K 
Sbjct: 275 SMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKS 334

Query: 181 ---YGFES------DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS-WNALFSRFQD 230
              +G +S      D  +G+ LV MY++ G ++   RVF+A++ + +V  WN +   +  
Sbjct: 335 GLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAK 394

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
               ++ L +F QM   G  P+      +LK  + LS    G   H + +K        V
Sbjct: 395 VGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAV 454

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
             +L+  Y KS  + DA + F+ +  +D  ++ ++I+  +  G    A++ F +M  +G 
Sbjct: 455 CNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQ 514

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
           + +  TL S L  C+       GR++H  +VKTG + +  ++ AL+ MY+ C        
Sbjct: 515 ELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQ 574

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           +F+    ++  SW  MI  Y++ GL +K     + M+ +G  PD       L A +    
Sbjct: 575 IFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDES 634

Query: 471 IEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENL 529
           +++GK  H  +I+   G+   +     ++++  +  +  E    I +     + + W  L
Sbjct: 635 LKQGKSVHGYTIRN--GMEKLLPVANALMEMYVKC-RNVEEARLIFDRVTNKDVISWNTL 691

Query: 530 LGACS 534
           +G  S
Sbjct: 692 IGGYS 696



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 120/235 (51%), Gaps = 7/235 (2%)

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGN----HVVGTSLVDMYDKSGCLEDAGVA 310
           ++ ++++ C     +   K+ HA     S         V+G  LV  Y K G L +A   
Sbjct: 99  SYCMVVQLCGEERSLEAAKRAHALIRASSAAATGGKGSVLGKRLVLAYLKCGDLGEARTV 158

Query: 311 FDSLANK--DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
           FD +  +  D+  +T+++++YA+AG+ + A+  FR+M+  G+  +   ++  L   S + 
Sbjct: 159 FDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLG 218

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
           +L  G ++H +  K G      V+ AL+A+Y++CG ++DA  VF     RD  SWN MIG
Sbjct: 219 SLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIG 278

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK 482
           G   +G    A++ F  M  +G     +T + VL AC+ +G    GK  H  S+K
Sbjct: 279 GCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVK 333



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 7/149 (4%)

Query: 395 LVAMYAKCGSIDDAEAVFKGSALR--DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV 452
           LV  Y KCG + +A  VF G   +  D   W  ++  Y K G  ++A+  FR M   G  
Sbjct: 142 LVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVS 201

Query: 453 PDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIEN 512
           PD      VL   S +G + EG+     ++K+ G+         +I +  R G+  +   
Sbjct: 202 PDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKL-GLGQACAVANALIAVYSRCGRMEDAAR 260

Query: 513 FITETKLTPNALVWENLLGAC---SWHGN 538
            + ++    +A+ W +++G C    WHG 
Sbjct: 261 -VFDSMHPRDAISWNSMIGGCFSNGWHGT 288


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 176/584 (30%), Positives = 302/584 (51%), Gaps = 1/584 (0%)

Query: 19  WNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAI 78
           WN L+N  A+SGD    + LF  M     +   ++ S V K F++   +  G+ +H   +
Sbjct: 12  WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFIL 71

Query: 79  RLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAK 138
           + G      +  SLV  Y K    D+A KVF  + + DV++W +II      G  ++   
Sbjct: 72  KSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLS 131

Query: 139 IFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYM 198
           +F  M  S ++ +   + S+     ++     G ++H++  K  F  +    N L+ MY 
Sbjct: 132 VFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYS 191

Query: 199 ENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIV 258
           + G +     VF  ++ +  VS+ ++ + +       + +++F +M  +G  P++ T   
Sbjct: 192 KCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTA 251

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKD 318
           +L  C+    +  GK++H    ++ L  +  V  +L+DMY K G +++A + F  +  KD
Sbjct: 252 VLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKD 311

Query: 319 LFAYTAIITSYAQAGEAEMALKCFRKMRLEG-IKSNEFTLASCLNGCSPVATLANGRLLH 377
           + ++  II  Y++   A  AL  F  +  E     +E T+A  L  C+ ++    GR +H
Sbjct: 312 IISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIH 371

Query: 378 SIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGE 437
              ++ G+  D  V+ +LV MYAKCG++  A  +F   A +D  SW +MI GY  HG G+
Sbjct: 372 GYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGK 431

Query: 438 KALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACM 497
           +A+  F  M   G   DEI+FV +L ACSH GL++EG + F+ ++    I PT++H+AC+
Sbjct: 432 EAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACI 491

Query: 498 IDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKME 557
           +D+L R G   +   FI    + P+A +W  LL  C  H +++L EK AEK+ ELEP+  
Sbjct: 492 VDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENT 551

Query: 558 SNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
             YV  ++I A   +W     +R  +  +G++K P CSWIE+ G
Sbjct: 552 GYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKG 595



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 198/369 (53%), Gaps = 1/369 (0%)

Query: 109 FYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ 168
           F  +K    + W  ++  L + G    +  +F  M  S V+ + +  + + ++ +     
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228
             GE +H  I K GF     VGN+LV+ Y++N RV    +VF+ +  +D +SWN++ + +
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH 288
                 ++GL +F QML+ G + ++ T + +   C+    +  G+ +H+  +K       
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 180

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
               +L+DMY K G L+ A   F  ++++ + +YT++I  YA+ G A  A+K F +M  E
Sbjct: 181 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 240

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
           GI  + +T+ + LN C+    L  G+ +H    +     D+FVS AL+ MYAKCGS+ +A
Sbjct: 241 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEA 300

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG-YVPDEITFVVVLSACSH 467
           E VF    ++D  SWN +IGGY K+    +AL  F ++L+E  + PDE T   VL AC+ 
Sbjct: 301 ELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACAS 360

Query: 468 MGLIEEGKK 476
           +   ++G++
Sbjct: 361 LSAFDKGRE 369



 Score =  197 bits (502), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 114/371 (30%), Positives = 195/371 (52%), Gaps = 1/371 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF  M E +V+SWN+++NGY  +G  +K + +F  M     +    ++ +V  G A+
Sbjct: 98  ARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCAD 157

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           S  I  G+ VH++ ++   + +     +L+DMYSKCG  D+A  VF  + D  VV++ ++
Sbjct: 158 SRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSM 217

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    ++G   EA K+F  M E  + P+ + +T+++           G+ +H  I +   
Sbjct: 218 IAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDL 277

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D  V NAL+ MY + G +     VF  +  +D +SWN +   +      ++ L +F  
Sbjct: 278 GFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNL 337

Query: 244 ML-LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +L  K F P+  T   +L AC+SLS    G+++H + +++    +  V  SLVDMY K G
Sbjct: 338 LLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCG 397

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            L  A + FD +A+KDL ++T +I  Y   G  + A+  F +MR  GI+++E +  S L 
Sbjct: 398 ALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLY 457

Query: 363 GCSPVATLANG 373
            CS    +  G
Sbjct: 458 ACSHSGLVDEG 468



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 84/176 (47%), Gaps = 17/176 (9%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           LA  +F  +   ++VSW  ++ GY   G G++ + LF  M+    +  + S  ++L   +
Sbjct: 401 LAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACS 460

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLS--CSLVDMYSKCGLADNALKVFYRIKD----PD 116
           +SG +  G     + +R  C ++  +     +VDM ++ G   + +K +  I++    PD
Sbjct: 461 HSGLVDEGWRFFNI-MRHECKIEPTVEHYACIVDMLARTG---DLIKAYRFIENMPIPPD 516

Query: 117 VVAWGAIIT-CL---DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ 168
              WGA++  C    D +   + A K+F L  E++     +VL + + A  E  +Q
Sbjct: 517 ATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENT---GYYVLMANIYAEAEKWEQ 569


>gi|225216917|gb|ACN85213.1| EMB2261 putative [Oryza glaberrima]
          Length = 615

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 171/538 (31%), Positives = 301/538 (55%), Gaps = 7/538 (1%)

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLA-DNALKVFYRIKDPDVVAWGAIITC 126
           + G  +H  A R G   D++L+ +L+  Y +      +AL+ F  +   DVVA  +I+  
Sbjct: 55  RLGCCLHGRAARAGLLADRYLANALLAFYVRLPRHLPHALRAFDDLPRRDVVAHSSILAA 114

Query: 127 LDQQGCCQEA-AKIFNLMR--ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
             + G  + A A + +++   +  V PN   L++ V+A     D+  G  +H  +   GF
Sbjct: 115 FLRAGMPRRALASLRDMLAGADDDVSPNAHALSAAVKACAVLRDRNAGACLHGSVLVRGF 174

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D++V ++LV MY          +VFE +   D + + +L S F   +  ++ +R F  
Sbjct: 175 GDDSVVLSSLVDMYGHVAAPGDARKVFEEMRAPDGICYTSLISAFVRNDWFEEAVRWFRS 234

Query: 244 MLL-KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           ML+  G +P+ CTF  ++ A  +       +Q HA  +   L GN +V +S +DMY K G
Sbjct: 235 MLMMNGVRPDGCTFGSMMTALGNSKRGSQARQAHAQVVTRGLCGNVIVESSTLDMYAKCG 294

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            + +A   FD +   +  +  A++  Y Q GE E  +  F++M  E    + ++L + L 
Sbjct: 295 LMVEARKVFDRMQVSNEVSRCALLGGYCQNGEYEKVIALFKEMDKE--DGDWYSLGTVLR 352

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+ ++++  G+ +H   ++     D+ V +ALV +YAKCG++D A +VF+ S +R+T +
Sbjct: 353 ACAGLSSVKPGKEIHCRFLRMAGWRDVVVESALVDLYAKCGAVDYAYSVFEASTVRNTIT 412

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN MIGG+ ++G GE+A+  F  M+ EG  PD I+F+ VL ACSH G++E+G+ +F+S+ 
Sbjct: 413 WNAMIGGFAQNGHGERAINLFNRMVREGPRPDYISFIGVLFACSHTGMVEQGRNYFNSMC 472

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           K YGI P I+H+ CM+D+  R     E E+ I ++    ++ +W ++LGA + H N ++ 
Sbjct: 473 KDYGIAPGIEHYNCMVDLFSRVELLEEAEDLINKSPFRNDSSLWADILGASATHSNPDVA 532

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           E+ ++K++ELEP+   +Y+   ++  T GRW D   +R L+ S+ +KKEP  SW++ +
Sbjct: 533 ERVSKKMMELEPQYHLSYILLENVYRTVGRWEDALEIRRLMESRKVKKEPGMSWVDAN 590



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/454 (22%), Positives = 210/454 (46%), Gaps = 14/454 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDM------EKKFSKFSLSTV 57
           A R F  +P  +VV+ +++L  +  +G  ++ +    S++DM      +   +  +LS  
Sbjct: 93  ALRAFDDLPRRDVVAHSSILAAFLRAGMPRRAL---ASLRDMLAGADDDVSPNAHALSAA 149

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
           +K  A      AG  +H   +  G   D  +  SLVDMY       +A KVF  ++ PD 
Sbjct: 150 VKACAVLRDRNAGACLHGSVLVRGFGDDSVVLSSLVDMYGHVAAPGDARKVFEEMRAPDG 209

Query: 118 VAWGAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
           + + ++I+   +    +EA + F +++  + V+P+     S++ A   +         HA
Sbjct: 210 ICYTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNSKRGSQARQAHA 269

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
            +   G   + +V ++ + MY + G +    +VF+ +   + VS  AL   +      ++
Sbjct: 270 QVVTRGLCGNVIVESSTLDMYAKCGLMVEARKVFDRMQVSNEVSRCALLGGYCQNGEYEK 329

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            + +F +M       +  +   +L+AC+ LS V  GK++H   ++ +   + VV ++LVD
Sbjct: 330 VIALFKEM--DKEDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMAGWRDVVVESALVD 387

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           +Y K G ++ A   F++   ++   + A+I  +AQ G  E A+  F +M  EG + +  +
Sbjct: 388 LYAKCGAVDYAYSVFEASTVRNTITWNAMIGGFAQNGHGERAINLFNRMVREGPRPDYIS 447

Query: 357 LASCLNGCSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
               L  CS    +  GR   +S+    G    +     +V ++++   +++AE +   S
Sbjct: 448 FIGVLFACSHTGMVEQGRNYFNSMCKDYGIAPGIEHYNCMVDLFSRVELLEEAEDLINKS 507

Query: 416 ALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
             R D++ W  ++G    H   + A    + M++
Sbjct: 508 PFRNDSSLWADILGASATHSNPDVAERVSKKMME 541



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 56/106 (52%), Gaps = 1/106 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  VF++    N ++WNA++ G+A++G G++ ++LF  M     +    S   VL  
Sbjct: 395 VDYAYSVFEASTVRNTITWNAMIGGFAQNGHGERAINLFNRMVREGPRPDYISFIGVLFA 454

Query: 61  FANSGYIKAGQ-VVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNA 105
            +++G ++ G+   ++M    G A        +VD++S+  L + A
Sbjct: 455 CSHTGMVEQGRNYFNSMCKDYGIAPGIEHYNCMVDLFSRVELLEEA 500


>gi|357167761|ref|XP_003581320.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Brachypodium distachyon]
          Length = 773

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 179/606 (29%), Positives = 324/606 (53%), Gaps = 10/606 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGD-GQKVMHLFCSMK---DMEKKFSKFSLSTVLK 59
           A ++F  M E +VV+W A+++G   +G+ G+ + +L   ++   D   + +  ++ + L+
Sbjct: 170 AVKLFDEMVERDVVAWTAVVSGCVRNGECGKGICYLVQMIRLAGDSGARPNSRTMESGLE 229

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
                G + AG+ +H  A++ G      +  +L  MYSKC + ++A  +F  + + DVV+
Sbjct: 230 ACGVLGELSAGRCLHGYAVKEGIRDCALVVSALFSMYSKCDMTEDACILFPELTEKDVVS 289

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  +I    ++G  +EA ++F  M +S ++P++ +++ ++     + +   G++ HAVI 
Sbjct: 290 WTGLIGAYCRRGLAREAVELFQEMEQSGLQPDEVLVSCVLSGLGSSANVNRGKAFHAVII 349

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           +  F    L+ N+L+SMY +   V     VF  +  +D  SW+ + + +       + L 
Sbjct: 350 RRNFGDSVLIANSLISMYGKFELVDVAGTVFGMLHQRDDESWSLMVAGYCKAGLDVKCLE 409

Query: 240 IFYQMLLKGFKPNMC---TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
           ++ QM  +     +C   + +  + +CS L  +  G+ +H ++IK  LD N +   SL+ 
Sbjct: 410 LYRQMQCRDHDEFLCDITSLVSAISSCSRLGRLRLGQSVHCYSIKCLLDENSIT-NSLIG 468

Query: 297 MYDKSGCLEDAGVAFD-SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
           MY + G  E A   F  +   +D+  + A+I+SY+  G +  AL  + +M  E +K N  
Sbjct: 469 MYGRCGNFELACKIFAVAKLRRDVVTWNALISSYSHVGRSNDALSLYGQMLTEDVKPNSS 528

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
           TL + ++ C+ +A L +G LLHS     G   D+ +STALV MY KCG +  A  +F   
Sbjct: 529 TLITVISACANLAALEHGELLHSYVKNMGLESDVSISTALVDMYTKCGQLGTARGIFDSM 588

Query: 416 ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
             RD  +WN+MI GY  HG   +AL+ F  M      P+ +TF+ +LSAC H GL++EG+
Sbjct: 589 LQRDVVTWNVMISGYGMHGEANQALKLFSEMEAGSIKPNSLTFLAILSACCHAGLVDEGR 648

Query: 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
           K F  +   Y + P +KH+ACM+D+LG++G   E E+ +    + P+  VW  LL AC  
Sbjct: 649 KLFIRMGG-YRLEPNLKHYACMVDLLGKSGLLQEAEDLVLAMPIKPDGGVWGTLLSACKV 707

Query: 536 HGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCS 595
           H N E+  + A+K    +P+ +  Y+  S+   +  +W++   +R  + + G++K    S
Sbjct: 708 HDNFEMGLRVAKKAFSSDPRNDGYYILMSNSYGSAEKWDEIEKLRDTMKNYGVEKGVGWS 767

Query: 596 WIEVDG 601
            ++V G
Sbjct: 768 AVDVWG 773



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 144/579 (24%), Positives = 267/579 (46%), Gaps = 27/579 (4%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
            A   F + P  +   WN+LL  +  + D    +     M+    + S+F+        A
Sbjct: 65  FATLAFSASPCPDTFLWNSLLRSHHCASDFDSALSAHRRMRASGARPSRFTAPLAASAAA 124

Query: 63  NSGYIKAGQVVHAMAIRLGCALDK---FLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
               +  G  VH+ +++ G         +S SLV MY++CG   +A+K+F  + + DVVA
Sbjct: 125 ELAALPVGTSVHSYSVKFGLLAGDGSVAVSSSLVYMYARCGSLGDAVKLFDEMVERDVVA 184

Query: 120 WGAIITCLDQQGCCQEA----AKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH 175
           W A+++   + G C +      ++  L  +S  +PN   + S + A    G+   G  +H
Sbjct: 185 WTAVVSGCVRNGECGKGICYLVQMIRLAGDSGARPNSRTMESGLEACGVLGELSAGRCLH 244

Query: 176 AVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD 235
               K G     LV +AL SMY +         +F  +  +D VSW  L   +       
Sbjct: 245 GYAVKEGIRDCALVVSALFSMYSKCDMTEDACILFPELTEKDVVSWTGLIGAYCRRGLAR 304

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
           + + +F +M   G +P+      +L    S ++V  GK  HA  I+ +   + ++  SL+
Sbjct: 305 EAVELFQEMEQSGLQPDEVLVSCVLSGLGSSANVNRGKAFHAVIIRRNFGDSVLIANSLI 364

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
            MY K   ++ AG  F  L  +D  +++ ++  Y +AG     L+ +R+M+      +EF
Sbjct: 365 SMYGKFELVDVAGTVFGMLHQRDDESWSLMVAGYCKAGLDVKCLELYRQMQCR--DHDEF 422

Query: 356 -----TLASCLNGCSPVATLANGRLLHSIAVKTGHLLD-MFVSTALVAMYAKCGSIDDAE 409
                +L S ++ CS +  L  G+ +H  ++K   LLD   ++ +L+ MY +CG+ + A 
Sbjct: 423 LCDITSLVSAISSCSRLGRLRLGQSVHCYSIKC--LLDENSITNSLIGMYGRCGNFELAC 480

Query: 410 AVFKGSAL-RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
            +F  + L RD  +WN +I  Y   G    AL  +  ML E   P+  T + V+SAC+++
Sbjct: 481 KIFAVAKLRRDVVTWNALISSYSHVGRSNDALSLYGQMLTEDVKPNSSTLITVISACANL 540

Query: 469 GLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWEN 528
             +E G+   S +K + G+   +     ++D+  + G+       I ++ L  + + W  
Sbjct: 541 AALEHGELLHSYVKNM-GLESDVSISTALVDMYTKCGQLGTARG-IFDSMLQRDVVTWNV 598

Query: 529 LLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           ++     HG       +A + L+L  +ME+  + P+ ++
Sbjct: 599 MISGYGMHG-------EANQALKLFSEMEAGSIKPNSLT 630



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 129/478 (26%), Positives = 216/478 (45%), Gaps = 16/478 (3%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           +HA+A   G +     +  LV  YS  GL   A   F     PD   W +++        
Sbjct: 34  LHALASTSGLSSRPDFAAKLVSAYSSSGLPGFATLAFSASPCPDTFLWNSLLRSHHCASD 93

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF---ESDTLV 189
              A      MR S  +P++F       A  E      G S+H+   K+G    +    V
Sbjct: 94  FDSALSAHRRMRASGARPSRFTAPLAASAAAELAALPVGTSVHSYSVKFGLLAGDGSVAV 153

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL--- 246
            ++LV MY   G +    ++F+ +  +D V+W A+ S         +G+    QM+    
Sbjct: 154 SSSLVYMYARCGSLGDAVKLFDEMVERDVVAWTAVVSGCVRNGECGKGICYLVQMIRLAG 213

Query: 247 -KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
             G +PN  T    L+AC  L ++  G+ LH + +K  +    +V ++L  MY K    E
Sbjct: 214 DSGARPNSRTMESGLEACGVLGELSAGRCLHGYAVKEGIRDCALVVSALFSMYSKCDMTE 273

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
           DA + F  L  KD+ ++T +I +Y + G A  A++ F++M   G++ +E  ++  L+G  
Sbjct: 274 DACILFPELTEKDVVSWTGLIGAYCRRGLAREAVELFQEMEQSGLQPDEVLVSCVLSGLG 333

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
             A +  G+  H++ ++      + ++ +L++MY K   +D A  VF     RD  SW++
Sbjct: 334 SSANVNRGKAFHAVIIRRNFGDSVLIANSLISMYGKFELVDVAGTVFGMLHQRDDESWSL 393

Query: 426 MIGGYVKHGLGEKALEAFRMML----DEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSS 480
           M+ GY K GL  K LE +R M     DE ++ D  + V  +S+CS +G +  G+  H  S
Sbjct: 394 MVAGYCKAGLDVKCLELYRQMQCRDHDE-FLCDITSLVSAISSCSRLGRLRLGQSVHCYS 452

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           IK +            +I + GR G F          KL  + + W  L+ + S  G 
Sbjct: 453 IKCLLDENSITNS---LIGMYGRCGNFELACKIFAVAKLRRDVVTWNALISSYSHVGR 507



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 159/312 (50%), Gaps = 7/312 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM--KDMEKKFSKF-SLSTV 57
           +++A  VF  + + +  SW+ ++ GY ++G   K + L+  M  +D ++      SL + 
Sbjct: 373 VDVAGTVFGMLHQRDDESWSLMVAGYCKAGLDVKCLELYRQMQCRDHDEFLCDITSLVSA 432

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCALDK-FLSCSLVDMYSKCGLADNALKVFYRIK-DP 115
           +   +  G ++ GQ VH  +I+  C LD+  ++ SL+ MY +CG  + A K+F   K   
Sbjct: 433 ISSCSRLGRLRLGQSVHCYSIK--CLLDENSITNSLIGMYGRCGNFELACKIFAVAKLRR 490

Query: 116 DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH 175
           DVV W A+I+     G   +A  ++  M    VKPN   L +++ A         GE +H
Sbjct: 491 DVVTWNALISSYSHVGRSNDALSLYGQMLTEDVKPNSSTLITVISACANLAALEHGELLH 550

Query: 176 AVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD 235
           + +   G ESD  +  ALV MY + G++     +F+++  +D V+WN + S +  +   +
Sbjct: 551 SYVKNMGLESDVSISTALVDMYTKCGQLGTARGIFDSMLQRDVVTWNVMISGYGMHGEAN 610

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
           Q L++F +M     KPN  TF+ IL AC     V  G++L      + L+ N      +V
Sbjct: 611 QALKLFSEMEAGSIKPNSLTFLAILSACCHAGLVDEGRKLFIRMGGYRLEPNLKHYACMV 670

Query: 296 DMYDKSGCLEDA 307
           D+  KSG L++A
Sbjct: 671 DLLGKSGLLQEA 682



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 134/301 (44%), Gaps = 18/301 (5%)

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
           +LHA      L         LV  Y  SG    A +AF +    D F + +++ S+  A 
Sbjct: 33  RLHALASTSGLSSRPDFAAKLVSAYSSSGLPGFATLAFSASPCPDTFLWNSLLRSHHCAS 92

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL---DMF 390
           + + AL   R+MR  G + + FT     +  + +A L  G  +HS +VK G L     + 
Sbjct: 93  DFDSALSAHRRMRASGARPSRFTAPLAASAAAELAALPVGTSVHSYSVKFGLLAGDGSVA 152

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKAL----EAFRMM 446
           VS++LV MYA+CGS+ DA  +F     RD  +W  ++ G V++G   K +    +  R+ 
Sbjct: 153 VSSSLVYMYARCGSLGDAVKLFDEMVERDVVAWTAVVSGCVRNGECGKGICYLVQMIRLA 212

Query: 447 LDEGYVPDEITFVVVLSACSHMGLIEEGK-KHFSSIKKIYGITPTIKHFACMIDILGRAG 505
            D G  P+  T    L AC  +G +  G+  H  ++K+  GI       + +  +  +  
Sbjct: 213 GDSGARPNSRTMESGLEACGVLGELSAGRCLHGYAVKE--GIRDCALVVSALFSMYSKC- 269

Query: 506 KFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSD 565
             TE    +       + + W  L+GA    G        A + +EL  +ME + + P +
Sbjct: 270 DMTEDACILFPELTEKDVVSWTGLIGAYCRRGL-------AREAVELFQEMEQSGLQPDE 322

Query: 566 I 566
           +
Sbjct: 323 V 323


>gi|302801528|ref|XP_002982520.1| hypothetical protein SELMODRAFT_116755 [Selaginella moellendorffii]
 gi|300149619|gb|EFJ16273.1| hypothetical protein SELMODRAFT_116755 [Selaginella moellendorffii]
          Length = 694

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 190/610 (31%), Positives = 309/610 (50%), Gaps = 40/610 (6%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           +LA  VF  M E +++SWN  +   AESGD    + L  SM+       K +  + L   
Sbjct: 63  DLAMAVFSEMRERDLISWNNAIAANAESGDYTFTLALLKSMQLEGMAPDKVTFVSALNAC 122

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
             S  +  G+++HA+ +  G   D  L  +LV MY +CG  ++A ++F+R+ + +VV+W 
Sbjct: 123 IGSRSLSNGRLIHALVLERGMEGDVVLGTALVTMYGRCGCLESAREIFHRMPERNVVSWN 182

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESS-VKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
           A++          EA ++F  M   + V+P +    +++ A T       G  IH +I +
Sbjct: 183 AMVASCTLNAHFAEAIELFKRMVAVAMVEPTRVSFITVLNAVTTREALAEGRRIHEMIQE 242

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNA----------------L 224
               S   V NALV+MY   G V    RVF A+  +D VSWNA                L
Sbjct: 243 RQLLSQIEVANALVTMYGRCGGVGDAERVFSAMERRDLVSWNAMISAYAQSGLACEVVNL 302

Query: 225 FSRFQDYES---------------------PDQGLRIFYQMLLKGFKPNMCTFIVILKAC 263
           F R +   S                     P   L IF +MLL+G + N  TF+ +L  C
Sbjct: 303 FHRMRAERSMAARDVISWNTMITGYVQAGDPFSALSIFKRMLLEGIRGNQVTFMSLLSVC 362

Query: 264 SSLSDVGFGKQLHAHTIKHS--LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFA 321
            S + +  G+ +H   I  +  L  + +V  ++V+MY K G L+ A   F+  ++++L +
Sbjct: 363 DSRALLRQGETIHRCVIDQTPELSSDPIVAAAIVNMYGKCGELDTARHLFEDTSHRNLAS 422

Query: 322 YTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAV 381
           + ++I++YA  G AE A     +MR EG+  +  T  + LN C     +  G+++H+  +
Sbjct: 423 WNSMISAYALHGRAEQAFDLSERMRREGVLPDRVTFITLLNACVAGGAVRQGKMIHARII 482

Query: 382 KTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALE 441
            +G   D  V+ ALV  Y+KCG++D A ++F     RD  SWN +I G+  +G   +AL+
Sbjct: 483 DSGLEKDTVVANALVNFYSKCGNLDTATSLFGALDYRDVVSWNGIIAGFAHNGHAREALK 542

Query: 442 AFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDIL 501
           +  +M  +G  PD ITF+ +LSA SH G + +G   F S+   + +   ++H+ CMID+L
Sbjct: 543 SMWLMQQDGVRPDAITFLTILSASSHAGFLRQGGDDFVSMAVDHELERGVEHYGCMIDLL 602

Query: 502 GRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYV 561
           GRAG+  E E F++  +     + W  LL AC  HG+ E  ++ A  ++E+ P+  S YV
Sbjct: 603 GRAGRIGEAEYFVSAMRDEDKEVSWMTLLSACEVHGDEERAKRVAGSIVEMNPQHSSAYV 662

Query: 562 FPSDISATQG 571
             S++ AT G
Sbjct: 663 ALSNLYATCG 672



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 127/468 (27%), Positives = 225/468 (48%), Gaps = 43/468 (9%)

Query: 50  SKFSLSTVLKGFANSGYIKAGQVVHAM--AIRLGCALDKFLSCSLVDMYSKCGLADNALK 107
           ++ +   +L+   +  +++ G+ +HA   A++L    D  ++ +++ MY KC  AD A+ 
Sbjct: 9   NRVTFLALLEACDSPEFLEDGKQIHARVSALQL-LESDVPVANAVMGMYRKCERADLAMA 67

Query: 108 VFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD 167
           VF  +++ D+++W   I    + G       +   M+   + P++    S + A   +  
Sbjct: 68  VFSEMRERDLISWNNAIAANAESGDYTFTLALLKSMQLEGMAPDKVTFVSALNACIGSRS 127

Query: 168 QRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR 227
              G  IHA++ + G E D ++G ALV+MY   G +     +F  +  ++ VSWNA+ + 
Sbjct: 128 LSNGRLIHALVLERGMEGDVVLGTALVTMYGRCGCLESAREIFHRMPERNVVSWNAMVAS 187

Query: 228 FQDYESPDQGLRIFYQML-LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDG 286
                   + + +F +M+ +   +P   +FI +L A ++   +  G+++H    +  L  
Sbjct: 188 CTLNAHFAEAIELFKRMVAVAMVEPTRVSFITVLNAVTTREALAEGRRIHEMIQERQLLS 247

Query: 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYA---------------- 330
              V  +LV MY + G + DA   F ++  +DL ++ A+I++YA                
Sbjct: 248 QIEVANALVTMYGRCGGVGDAERVFSAMERRDLVSWNAMISAYAQSGLACEVVNLFHRMR 307

Query: 331 ---------------------QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369
                                QAG+   AL  F++M LEGI+ N+ T  S L+ C   A 
Sbjct: 308 AERSMAARDVISWNTMITGYVQAGDPFSALSIFKRMLLEGIRGNQVTFMSLLSVCDSRAL 367

Query: 370 LANGRLLHSIAVKTGHLL--DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
           L  G  +H   +     L  D  V+ A+V MY KCG +D A  +F+ ++ R+ ASWN MI
Sbjct: 368 LRQGETIHRCVIDQTPELSSDPIVAAAIVNMYGKCGELDTARHLFEDTSHRNLASWNSMI 427

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
             Y  HG  E+A +    M  EG +PD +TF+ +L+AC   G + +GK
Sbjct: 428 SAYALHGRAEQAFDLSERMRREGVLPDRVTFITLLNACVAGGAVRQGK 475



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 125/467 (26%), Positives = 210/467 (44%), Gaps = 52/467 (11%)

Query: 143 MRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG-FESDTLVGNALVSMYMENG 201
           M  SS+ PN+    +L+ A         G+ IHA +      ESD  V NA++ MY +  
Sbjct: 1   MAGSSLDPNRVTFLALLEACDSPEFLEDGKQIHARVSALQLLESDVPVANAVMGMYRKCE 60

Query: 202 RVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ--GLRIFYQMLLKGFKPNMCTFIVI 259
           R      VF  +  +D +SWN   +   + ES D    L +   M L+G  P+  TF+  
Sbjct: 61  RADLAMAVFSEMRERDLISWNNAIA--ANAESGDYTFTLALLKSMQLEGMAPDKVTFVSA 118

Query: 260 LKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL 319
           L AC     +  G+ +HA  ++  ++G+ V+GT+LV MY + GCLE A   F  +  +++
Sbjct: 119 LNACIGSRSLSNGRLIHALVLERGMEGDVVLGTALVTMYGRCGCLESAREIFHRMPERNV 178

Query: 320 FAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFTLASCLNGCSPVATLANGRLLHS 378
            ++ A++ S         A++ F++M  +  ++    +  + LN  +    LA GR +H 
Sbjct: 179 VSWNAMVASCTLNAHFAEAIELFKRMVAVAMVEPTRVSFITVLNAVTTREALAEGRRIHE 238

Query: 379 IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF-------------------------- 412
           +  +   L  + V+ ALV MY +CG + DAE VF                          
Sbjct: 239 MIQERQLLSQIEVANALVTMYGRCGGVGDAERVFSAMERRDLVSWNAMISAYAQSGLACE 298

Query: 413 -----------KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVV 461
                      +  A RD  SWN MI GYV+ G    AL  F+ ML EG   +++TF+ +
Sbjct: 299 VVNLFHRMRAERSMAARDVISWNTMITGYVQAGDPFSALSIFKRMLLEGIRGNQVTFMSL 358

Query: 462 LSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLT 520
           LS C    L+ +G+  H   I +   ++      A ++++ G+ G+     +   +T   
Sbjct: 359 LSVCDSRALLRQGETIHRCVIDQTPELSSDPIVAAAIVNMYGKCGELDTARHLFEDTS-H 417

Query: 521 PNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            N   W +++ A + HG        AE+  +L  +M    V P  ++
Sbjct: 418 RNLASWNSMISAYALHGR-------AEQAFDLSERMRREGVLPDRVT 457



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 129/484 (26%), Positives = 216/484 (44%), Gaps = 48/484 (9%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLK 59
           +E A+ +F  MPE NVVSWNA++     +    + + LF  M  +   + ++ S  TVL 
Sbjct: 163 LESAREIFHRMPERNVVSWNAMVASCTLNAHFAEAIELFKRMVAVAMVEPTRVSFITVLN 222

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
                  +  G+ +H M           ++ +LV MY +CG   +A +VF  ++  D+V+
Sbjct: 223 AVTTREALAEGRRIHEMIQERQLLSQIEVANALVTMYGRCGGVGDAERVFSAMERRDLVS 282

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESS-------------------------------- 147
           W A+I+   Q G   E   +F+ MR                                   
Sbjct: 283 WNAMISAYAQSGLACEVVNLFHRMRAERSMAARDVISWNTMITGYVQAGDPFSALSIFKR 342

Query: 148 -----VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE--SDTLVGNALVSMYMEN 200
                ++ NQ    SL+         R GE+IH  +     E  SD +V  A+V+MY + 
Sbjct: 343 MLLEGIRGNQVTFMSLLSVCDSRALLRQGETIHRCVIDQTPELSSDPIVAAAIVNMYGKC 402

Query: 201 GRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVIL 260
           G +     +FE  +H++  SWN++ S +  +   +Q   +  +M  +G  P+  TFI +L
Sbjct: 403 GELDTARHLFEDTSHRNLASWNSMISAYALHGRAEQAFDLSERMRREGVLPDRVTFITLL 462

Query: 261 KACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLF 320
            AC +   V  GK +HA  I   L+ + VV  +LV+ Y K G L+ A   F +L  +D+ 
Sbjct: 463 NACVAGGAVRQGKMIHARIIDSGLEKDTVVANALVNFYSKCGNLDTATSLFGALDYRDVV 522

Query: 321 AYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIA 380
           ++  II  +A  G A  ALK    M+ +G++ +  T  + L+  S    L  G     ++
Sbjct: 523 SWNGIIAGFAHNGHAREALKSMWLMQQDGVRPDAITFLTILSASSHAGFLRQGG-DDFVS 581

Query: 381 VKTGHLLDMFVST--ALVAMYAKCGSIDDAEAVFKGSALRD---TASWNMMIGGYVKHGL 435
           +   H L+  V     ++ +  + G I +AE  +  SA+RD     SW  ++     HG 
Sbjct: 582 MAVDHELERGVEHYGCMIDLLGRAGRIGEAE--YFVSAMRDEDKEVSWMTLLSACEVHGD 639

Query: 436 GEKA 439
            E+A
Sbjct: 640 EERA 643



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 112/242 (46%), Gaps = 2/242 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+ +F+     N+ SWN++++ YA  G  ++   L   M+       + +  T+L  
Sbjct: 405 LDTARHLFEDTSHRNLASWNSMISAYALHGRAEQAFDLSERMRREGVLPDRVTFITLLNA 464

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
               G ++ G+++HA  I  G   D  ++ +LV+ YSKCG  D A  +F  +   DVV+W
Sbjct: 465 CVAGGAVRQGKMIHARIIDSGLEKDTVVANALVNFYSKCGNLDTATSLFGALDYRDVVSW 524

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR-CGESIHAVIC 179
             II      G  +EA K   LM++  V+P+     +++ A++  G  R  G+   ++  
Sbjct: 525 NGIIAGFAHNGHAREALKSMWLMQQDGVRPDAITFLTILSASSHAGFLRQGGDDFVSMAV 584

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQD-SVSWNALFSRFQDYESPDQGL 238
            +  E        ++ +    GR+        A+  +D  VSW  L S  + +   ++  
Sbjct: 585 DHELERGVEHYGCMIDLLGRAGRIGEAEYFVSAMRDEDKEVSWMTLLSACEVHGDEERAK 644

Query: 239 RI 240
           R+
Sbjct: 645 RV 646


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 160/430 (37%), Positives = 245/430 (56%), Gaps = 1/430 (0%)

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
           G  +HA I +  F  D ++GN L++MY + G +    +VFE +  +D V+W  L S +  
Sbjct: 79  GRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQ 138

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
           ++ P   L  F QML  G+ PN  T   ++KA ++      G QLH   +K   D N  V
Sbjct: 139 HDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHV 198

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
           G++L+D+Y + G ++DA + FD+L +++  ++ A+I  +A+    E AL+ F+ M  +G 
Sbjct: 199 GSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGF 258

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
           + + F+ AS    CS    L  G+ +H+  +K+G  L  F    L+ MYAK GSI DA  
Sbjct: 259 RPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARK 318

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           +F   A RD  SWN ++  Y +HG G++A+  F  M   G  P+EI+F+ VL+ACSH GL
Sbjct: 319 IFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGL 378

Query: 471 IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
           ++EG  ++  +KK  GI P   H+  ++D+LGRAG       FI E  + P A +W+ LL
Sbjct: 379 LDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALL 437

Query: 531 GACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKK 590
            AC  H N EL    AE + EL+P     +V   +I A+ GRWND + VR  +   G+KK
Sbjct: 438 NACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKK 497

Query: 591 EPSCSWIEVD 600
           EP+CSW+E++
Sbjct: 498 EPACSWVEIE 507



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 115/380 (30%), Positives = 192/380 (50%), Gaps = 1/380 (0%)

Query: 55  STVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
           +T+LK       +  G++VHA  ++     D  +  +L++MY+KCG  + A KVF ++  
Sbjct: 64  NTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQ 123

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
            D V W  +I+   Q     +A   FN M      PN+F L+S+++A        CG  +
Sbjct: 124 RDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQL 183

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H    K GF+S+  VG+AL+ +Y   G +     VF+A+  ++ VSWNAL +        
Sbjct: 184 HGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGT 243

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
           ++ L +F  ML  GF+P+  ++  +  ACSS   +  GK +HA+ IK         G +L
Sbjct: 244 EKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTL 303

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           +DMY KSG + DA   FD LA +D+ ++ +++T+YAQ G  + A+  F +MR  GI+ NE
Sbjct: 304 LDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNE 363

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            +  S L  CS    L  G   + +  K G + + +    +V +  + G ++ A    + 
Sbjct: 364 ISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEE 423

Query: 415 SALRDTAS-WNMMIGGYVKH 433
             +  TA+ W  ++     H
Sbjct: 424 MPIEPTAAIWKALLNACRMH 443



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 117/483 (24%), Positives = 208/483 (43%), Gaps = 65/483 (13%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A++VF+ MP+ + V+W  L++GY++       +  F  M       ++F+LS+V+K 
Sbjct: 111 LEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKA 170

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A       G  +H   ++ G   +  +  +L+D+Y++ GL D+A  VF  ++  + V+W
Sbjct: 171 AAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSW 230

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    ++   ++A ++F  M     +P+ F   SL  A + TG    G+ +HA + K
Sbjct: 231 NALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIK 290

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G +     GN L+ MY ++G +    ++F+ +A +D VSWN+L + +  +    + +  
Sbjct: 291 SGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWW 350

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS--LDGNHVVGTSLVDMY 298
           F +M   G +PN  +F+ +L ACS                 HS  LD     G    ++ 
Sbjct: 351 FEEMRRVGIRPNEISFLSVLTACS-----------------HSGLLDE----GWHYYELM 389

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G + +A            + Y  ++    +AG+   AL+   +M +E   +      
Sbjct: 390 KKDGIVPEA------------WHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAA---IWK 434

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLL-----DMFVSTALVAMYAKCGSIDDAEAVFK 413
           + LN C        G      A    H+      D      L  +YA  G  +DA  V K
Sbjct: 435 ALLNACRMHKNTELG------AYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRK 488

Query: 414 -----GSALRDTASW-------NMMIGGYVKHGLGEKALEAFRMMLDE----GYVPDEIT 457
                G       SW       +M +    +H   E+    +  +L +    GYVPD   
Sbjct: 489 KMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSH 548

Query: 458 FVV 460
            +V
Sbjct: 549 VIV 551



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 144/285 (50%), Gaps = 8/285 (2%)

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
           +  +LK C+    +  G+ +HAH ++     + V+G +L++MY K G LE+A   F+ + 
Sbjct: 63  YNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMP 122

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRL 375
            +D   +T +I+ Y+Q      AL  F +M   G   NEFTL+S +   +       G  
Sbjct: 123 QRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQ 182

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           LH   VK G   ++ V +AL+ +Y + G +DDA+ VF     R+  SWN +I G+ +   
Sbjct: 183 LHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSG 242

Query: 436 GEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK-KHFSSIKKIYGITPTIKHF 494
            EKALE F+ ML +G+ P   ++  +  ACS  G +E+GK  H   IK    +      F
Sbjct: 243 TEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVA----F 298

Query: 495 A--CMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           A   ++D+  ++G   +    I +     + + W +LL A + HG
Sbjct: 299 AGNTLLDMYAKSGSIHDARK-IFDRLAKRDVVSWNSLLTAYAQHG 342


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 184/589 (31%), Positives = 306/589 (51%), Gaps = 10/589 (1%)

Query: 19  WNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTV-----LKGFANSGYIKAGQVV 73
           +N+  + +++ GD  +++    SM+  E    ++ L+++     L+ F N+   K GQ +
Sbjct: 25  YNSFTSHFSQ-GDVAQMVERSLSMR--EHPLQQYPLTSLQCGALLQSFTNTKSFKQGQQL 81

Query: 74  HAMAIRLGCALDK-FLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           HA  I      +  +L+  L   Y+ CGL   A  +F  I   +   W  +I      G 
Sbjct: 82  HAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYASNGL 141

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
             ++  ++  M     + + F    +++A  +      G  +H+ +   G ESD  VGN+
Sbjct: 142 PMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNS 201

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           L++MY + G +     VF+ +A +D  SWN + S +           +F  M   G   +
Sbjct: 202 LLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFAD 261

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSL-DGNHVVGTSLVDMYDKSGCLEDAGVAF 311
             T + +L AC+ L  V  GK +H + +++S+ + N     SL++MY    C+ DA   F
Sbjct: 262 CTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLF 321

Query: 312 DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLA 371
           + +  KD  ++ ++I  YA+ G+A  +L+ FR+M L+G   ++ T  + L  C  +A L 
Sbjct: 322 ERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALR 381

Query: 372 NGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV 431
            G  +HS  VK G   +  V TALV MY+KCGS+  +  VF     +   SW+ M+ GY 
Sbjct: 382 YGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYG 441

Query: 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI 491
            HG G +A+     M     +PD   F  +LSACSH GL+ EGK+ F  ++K Y + P +
Sbjct: 442 LHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPAL 501

Query: 492 KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551
            H++CM+D+LGRAG   E    I   ++ P + +W  LL A   H NI+L E  A+K+ +
Sbjct: 502 SHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFD 561

Query: 552 LEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           + PK+ S+Y+  S+I A + RW+D   VRA++  +G+KK P CS+IE+D
Sbjct: 562 MNPKVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELD 610



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 105/423 (24%), Positives = 202/423 (47%), Gaps = 2/423 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A+ +F  +   N   WN ++ GYA +G   K + L+  M    ++   F+   VLK 
Sbjct: 111 MSQAEVIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKA 170

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +   ++ G+ VH+  +  G   D ++  SL+ MY+K G    A  VF R+ + D+ +W
Sbjct: 171 CGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSW 230

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+   +      A  +F+LM ++ +  +   L  L+ A  +    + G+ IH    +
Sbjct: 231 NTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVR 290

Query: 181 YGFES-DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
               + +    N+L+ MY     +    R+FE +  +D+VSWN++   +       + LR
Sbjct: 291 NSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLR 350

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F +M L G  P+  TFI +L AC  ++ + +G  +H++ +K   D N +VGT+LVDMY 
Sbjct: 351 LFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYS 410

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G L  +   FD + +K L +++A++  Y   G    A+     M+   +  +     S
Sbjct: 411 KCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTS 470

Query: 360 CLNGCSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
            L+ CS    +  G+ + + +  +      +   + +V +  + G +D+A  + +   ++
Sbjct: 471 ILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIK 530

Query: 419 DTA 421
            T+
Sbjct: 531 PTS 533


>gi|357120534|ref|XP_003561982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 989

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 170/597 (28%), Positives = 326/597 (54%), Gaps = 3/597 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ AK +F S  E N + WN++++GY  + +    +  FC M+         ++  V+ G
Sbjct: 393 LDSAKHLFDSCTEKNNLLWNSIISGYLVNNEWNMALDTFCKMQIENVAPDATTVIKVIYG 452

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +   ++  + +HA A+R    L++ +  +L+ MY  CG   ++ K+F +++   +++W
Sbjct: 453 CRHIKDLRMAKSIHAYAVRNRFELNQSVMNALLAMYGDCGELSSSYKLFQKMEVRMLISW 512

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             II+   +    + + K+F  MR+  ++ +   L  L+ + +   D   GES+H++  K
Sbjct: 513 NTIISGYAEIRDLEASVKLFFQMRQEGLQFDVVTLIGLISSISVAEDTTVGESLHSLAVK 572

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G   D  + N L++MY   G V    R+F+ ++ +++VS+N L + ++     ++ L +
Sbjct: 573 SGCNMDISLTNTLITMYSNCGSVEACQRLFDNLSSRNTVSYNVLMTGYRKNNLSEEILPL 632

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QM+    +PN  T + +L  C +      GK +H + I++         TS + MY +
Sbjct: 633 FRQMVKNEQEPNHITVLNLLPVCQNHQQ---GKSVHCYAIRNFSTLETSFFTSAICMYSR 689

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
              ++ +   F+S+  +++  + AI+++  Q   A+ A   FR+M    +K +E T+ S 
Sbjct: 690 FNNVDYSCKLFNSVGERNIIVWNAILSACVQCKLADTAFDFFRQMHFLNMKPDEVTMMSL 749

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           ++ C+ +     G  + ++ ++ G    + V  AL+ M+++CGS+  A  +F  S ++D+
Sbjct: 750 VSACAQLGNSDLGECVTALILQKGFGGTLLVVNALIDMHSRCGSLSFARELFDSSVVKDS 809

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            +W+ MI  Y  HG  E AL  F MM+D G  PD+ITFV++LSACSH G +E+ +  F S
Sbjct: 810 VTWSAMINSYSMHGDCESALAIFSMMIDSGVKPDDITFVIILSACSHSGFVEQARALFKS 869

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           ++  +GITP ++H+ACM+D+LGR+G   E  + +      P+  + E+LLGAC +HGN +
Sbjct: 870 LQIDHGITPRMEHYACMVDLLGRSGHLDEAYDVVRSMSFRPSESLLESLLGACRFHGNSK 929

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           + E     L++ +     +YV  S+I A+ G+WND+  +R  + ++G++K+   S +
Sbjct: 930 IGEAVGNLLIDSQHGNPRSYVMLSNIYASVGKWNDYEWLRVDMEAKGLRKDAGVSLV 986



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 135/532 (25%), Positives = 269/532 (50%), Gaps = 9/532 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           ++ VF  M + +++SWNA+++GY+ +G  ++ +     M+    + +  +L  +      
Sbjct: 194 SRTVFDFMGQKDLISWNAMISGYSLNGSLREAVEATQEMQQDGMRANASTLVCIAGACGA 253

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +G   AG  +HA A++ G   D+ L+ +L+ +Y+      ++  +F      D+V++ ++
Sbjct: 254 AGDSDAGGSLHAFALKCGVLGDESLAPALISLYAALDDLSSSRVLFDLQHVKDLVSYNSM 313

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   Q G  +E+  +F  M  + + PN   + S++   ++      G+S+H ++ K+G 
Sbjct: 314 ISAYMQHGKWKESFDVFRQMHCAGLGPNLVTVISVLPTCSDFFGVNLGDSVHGMVIKFGL 373

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
                V +ALVSMY + G +     +F++   ++++ WN++ S +      +  L  F +
Sbjct: 374 AEQISVVSALVSMYSKLGELDSAKHLFDSCTEKNNLLWNSIISGYLVNNEWNMALDTFCK 433

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M ++   P+  T I ++  C  + D+   K +HA+ +++  + N  V  +L+ MY   G 
Sbjct: 434 MQIENVAPDATTVIKVIYGCRHIKDLRMAKSIHAYAVRNRFELNQSVMNALLAMYGDCGE 493

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L  +   F  +  + L ++  II+ YA+  + E ++K F +MR EG++ +  TL   ++ 
Sbjct: 494 LSSSYKLFQKMEVRMLISWNTIISGYAEIRDLEASVKLFFQMRQEGLQFDVVTLIGLISS 553

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
            S       G  LHS+AVK+G  +D+ ++  L+ MY+ CGS++  + +F   + R+T S+
Sbjct: 554 ISVAEDTTVGESLHSLAVKSGCNMDISLTNTLITMYSNCGSVEACQRLFDNLSSRNTVSY 613

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK 482
           N+++ GY K+ L E+ L  FR M+     P+ IT + +L  C +    ++GK  H  +I+
Sbjct: 614 NVLMTGYRKNNLSEEILPLFRQMVKNEQEPNHITVLNLLPVCQNH---QQGKSVHCYAIR 670

Query: 483 KIYGI-TPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
               + T       CM           ++ N + E     N +VW  +L AC
Sbjct: 671 NFSTLETSFFTSAICMYSRFNNVDYSCKLFNSVGER----NIIVWNAILSAC 718



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 126/451 (27%), Positives = 215/451 (47%), Gaps = 2/451 (0%)

Query: 16  VVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHA 75
           V S N  +  +++ G  ++++ L+ ++         F+   V+K  A    +  G+ +H 
Sbjct: 107 VYSLNLAVRCFSDHGFHRELLDLYRTLCTFGSD--NFTFPPVIKACAAVSCLPLGREMHC 164

Query: 76  MAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQE 135
             +R G   +  +  +L+DMY+K G    +  VF  +   D+++W A+I+     G  +E
Sbjct: 165 RVLRTGHEGNVGVQTALLDMYAKAGWIGASRTVFDFMGQKDLISWNAMISGYSLNGSLRE 224

Query: 136 AAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVS 195
           A +    M++  ++ N   L  +  A    GD   G S+HA   K G   D  +  AL+S
Sbjct: 225 AVEATQEMQQDGMRANASTLVCIAGACGAAGDSDAGGSLHAFALKCGVLGDESLAPALIS 284

Query: 196 MYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCT 255
           +Y     +S    +F+    +D VS+N++ S +  +    +   +F QM   G  PN+ T
Sbjct: 285 LYAALDDLSSSRVLFDLQHVKDLVSYNSMISAYMQHGKWKESFDVFRQMHCAGLGPNLVT 344

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
            I +L  CS    V  G  +H   IK  L     V ++LV MY K G L+ A   FDS  
Sbjct: 345 VISVLPTCSDFFGVNLGDSVHGMVIKFGLAEQISVVSALVSMYSKLGELDSAKHLFDSCT 404

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRL 375
            K+   + +II+ Y    E  MAL  F KM++E +  +  T+   + GC  +  L   + 
Sbjct: 405 EKNNLLWNSIISGYLVNNEWNMALDTFCKMQIENVAPDATTVIKVIYGCRHIKDLRMAKS 464

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           +H+ AV+    L+  V  AL+AMY  CG +  +  +F+   +R   SWN +I GY +   
Sbjct: 465 IHAYAVRNRFELNQSVMNALLAMYGDCGELSSSYKLFQKMEVRMLISWNTIISGYAEIRD 524

Query: 436 GEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
            E +++ F  M  EG   D +T + ++S+ S
Sbjct: 525 LEASVKLFFQMRQEGLQFDVVTLIGLISSIS 555



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 111/424 (26%), Positives = 196/424 (46%), Gaps = 8/424 (1%)

Query: 73  VHAM-AIRLGCALDKFLSCSLVDMYSKCGLADNALKVF---YRIKDPDVVAWGAIITCLD 128
           +HA+ A+    A D  +  ++VD Y   G   +A  VF   YR + P V +    + C  
Sbjct: 60  LHALLAVAGAIARDTSVVTAVVDRYLSFGRPASAASVFAGAYR-RRPTVYSLNLAVRCFS 118

Query: 129 QQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTL 188
             G  +E   ++  +   +   + F    +++A         G  +H  + + G E +  
Sbjct: 119 DHGFHRELLDLYRTL--CTFGSDNFTFPPVIKACAAVSCLPLGREMHCRVLRTGHEGNVG 176

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG 248
           V  AL+ MY + G +     VF+ +  +D +SWNA+ S +    S  + +    +M   G
Sbjct: 177 VQTALLDMYAKAGWIGASRTVFDFMGQKDLISWNAMISGYSLNGSLREAVEATQEMQQDG 236

Query: 249 FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
            + N  T + I  AC +  D   G  LHA  +K  + G+  +  +L+ +Y     L  + 
Sbjct: 237 MRANASTLVCIAGACGAAGDSDAGGSLHAFALKCGVLGDESLAPALISLYAALDDLSSSR 296

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
           V FD    KDL +Y ++I++Y Q G+ + +   FR+M   G+  N  T+ S L  CS   
Sbjct: 297 VLFDLQHVKDLVSYNSMISAYMQHGKWKESFDVFRQMHCAGLGPNLVTVISVLPTCSDFF 356

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
            +  G  +H + +K G    + V +ALV+MY+K G +D A+ +F     ++   WN +I 
Sbjct: 357 GVNLGDSVHGMVIKFGLAEQISVVSALVSMYSKLGELDSAKHLFDSCTEKNNLLWNSIIS 416

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGI 487
           GY+ +     AL+ F  M  E   PD  T + V+  C H+  +   K  H  +++  + +
Sbjct: 417 GYLVNNEWNMALDTFCKMQIENVAPDATTVIKVIYGCRHIKDLRMAKSIHAYAVRNRFEL 476

Query: 488 TPTI 491
             ++
Sbjct: 477 NQSV 480


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 181/553 (32%), Positives = 292/553 (52%), Gaps = 3/553 (0%)

Query: 50  SKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFL--SCSLVDMYSKCGLADNALK 107
           S   L  +LK  A++  +K G+ +H+  I    A +  +    SL++ Y+K      A  
Sbjct: 28  SPLDLIKLLKLSADTKNLKVGKTIHSHLIVTSRATENSIIEVNSLINFYAKVNQVSIAHN 87

Query: 108 VFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETG 166
           +F R+ + +VV+W A++T     G   +  ++  +++ E +V PN+++L   + +  + G
Sbjct: 88  LFDRMPERNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAIAISSCCDRG 147

Query: 167 DQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS 226
               G   H ++ K GF     V NALVSMY +   V     V+  +   D V++N++ S
Sbjct: 148 RVEEGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILS 207

Query: 227 RFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDG 286
              +     +GL +   M+ +  K +  TF+     C+SL D+  G  +H   +   ++ 
Sbjct: 208 SLVENGYLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVEC 267

Query: 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR 346
           +  V +++++MY K G    A   FD L ++++  +TA++ S  Q G  E AL  F KM 
Sbjct: 268 DAYVSSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKME 327

Query: 347 LEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSID 406
            E +KSNEFT A  LN C+ ++   NG LLH  + K+G    + V  AL+ MYAK G I+
Sbjct: 328 QENVKSNEFTYAVLLNACAGLSARRNGSLLHGHSEKSGFKHHVMVGNALINMYAKSGDIE 387

Query: 407 DAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
            A+ VF     RD  +WN MI G+  HGLG+KAL  F+ ML     P+ +TF  VLSAC 
Sbjct: 388 AAKKVFSDMMHRDIITWNAMICGFSHHGLGKKALLVFQDMLAAEEHPNYVTFTGVLSACG 447

Query: 467 HMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVW 526
           H+GL++EG  +   + K +G+ P ++H+ C++ +L + G+  E  NF+    +  + + W
Sbjct: 448 HLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNEARNFMRTAPVKWDVVAW 507

Query: 527 ENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQ 586
             LL AC  H N  L    AE +LE++P     Y   S+I A + RW+    VR L+  +
Sbjct: 508 RTLLNACHVHQNYGLGRWVAEFVLEMDPNDVGTYTLLSNIYAKEKRWDGVVKVRKLMRDK 567

Query: 587 GIKKEPSCSWIEV 599
            IKKEP  SWIE+
Sbjct: 568 KIKKEPGVSWIEI 580



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 124/472 (26%), Positives = 231/472 (48%), Gaps = 17/472 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDM--EKKFS--KFSLST 56
           + +A  +F  MPE NVVSW+AL+ GY  +G   KV+ L   +KDM  E   S  ++ L+ 
Sbjct: 82  VSIAHNLFDRMPERNVVSWSALMTGYLLNGFSLKVIRL---LKDMISEGNVSPNEYILAI 138

Query: 57  VLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD 116
            +    + G ++ G+  H + ++ G +   ++  +LV MYSKC +  +A+ V+  +   D
Sbjct: 139 AISSCCDRGRVEEGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVND 198

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
           +VA+ +I++ L + G  +E  ++   M   SVK ++    +         D R G  +H 
Sbjct: 199 IVAYNSILSSLVENGYLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHG 258

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
            +     E D  V +A+++MY + G+      VF+ +  ++ V W A+ +        ++
Sbjct: 259 KMLTSDVECDAYVSSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEE 318

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            L +F +M  +  K N  T+ V+L AC+ LS    G  LH H+ K     + +VG +L++
Sbjct: 319 ALNLFSKMEQENVKSNEFTYAVLLNACAGLSARRNGSLLHGHSEKSGFKHHVMVGNALIN 378

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           MY KSG +E A   F  + ++D+  + A+I  ++  G  + AL  F+ M       N  T
Sbjct: 379 MYAKSGDIEAAKKVFSDMMHRDIITWNAMICGFSHHGLGKKALLVFQDMLAAEEHPNYVT 438

Query: 357 LASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
               L+ C  +  +  G   LH +  + G    +   T +V++ +K G +++A    + +
Sbjct: 439 FTGVLSACGHLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNEARNFMRTA 498

Query: 416 ALR-DTASWNMMIGG---YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
            ++ D  +W  ++     +  +GLG    E F + +D    P+++    +LS
Sbjct: 499 PVKWDVVAWRTLLNACHVHQNYGLGRWVAE-FVLEMD----PNDVGTYTLLS 545


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 177/573 (30%), Positives = 296/573 (51%), Gaps = 42/573 (7%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADN------ALKVFYRIKDPDVVAW 120
           +++ +++HA  I+ G     +    L++    C L+ +      A+ VF  I++P+++ W
Sbjct: 3   LQSLRMIHAQMIKTGLHNTNYALSKLIEF---CILSPHFDGLPYAISVFETIQEPNLLIW 59

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +            A K++  M    + PN +    L+++  ++   + G+ IH  + K
Sbjct: 60  NTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLK 119

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ------------------------ 216
            G + D  V  +L+SMY++NGR+    +VF+   H+                        
Sbjct: 120 LGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKM 179

Query: 217 -------DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDV 269
                  D VSWNA+ S + +  +  + L +F  M+    +P+  T + ++ AC+    +
Sbjct: 180 FDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSI 239

Query: 270 GFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSY 329
             G+Q+H+    H    N  +  +L+D+Y K G LE A   F+ L  KD+ ++  +I  Y
Sbjct: 240 ELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGY 299

Query: 330 AQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVK--TGHLL 387
                 + AL  F++M   G   N+ T+ S L  C+ +  +  GR +H    K   G   
Sbjct: 300 THMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVAN 359

Query: 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML 447
              + T+L+ MYAKCG I+ A  VF     +  +SWN MI G+  HG  + + + F  M 
Sbjct: 360 ASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMR 419

Query: 448 DEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKF 507
             G  PD+ITFV +LSACSH G+++ G+  F S+ + Y +TP ++H+ CMID+LG +G F
Sbjct: 420 KNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLF 479

Query: 508 TEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            E E  I   ++ P+ ++W +LL AC  HGN+EL E  A+ L+++EP+   +YV  S+I 
Sbjct: 480 KEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIY 539

Query: 568 ATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           AT GRWN+ +  RALL+ +G+KK P CS IE+D
Sbjct: 540 ATAGRWNEVANTRALLNDKGMKKVPGCSSIEID 572



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 142/545 (26%), Positives = 247/545 (45%), Gaps = 68/545 (12%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A  VF+++ E N++ WN +  G+A S D    + L+  M  +    + ++   +LK 
Sbjct: 41  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKS 100

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDM------------------------- 95
            A S   K GQ +H   ++LGC LD ++  SL+ M                         
Sbjct: 101 CAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSY 160

Query: 96  ------YSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK 149
                 Y+  G  +NA K+F  I   DVV+W A+I+   + G  +EA ++F  M +++V+
Sbjct: 161 TALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVR 220

Query: 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRV 209
           P++  + ++V A  ++G    G  +H+ I  +GF S+  + NAL+ +Y + G +     +
Sbjct: 221 PDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGL 280

Query: 210 FEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDV 269
           FE + ++D +SWN L   +       + L +F +ML  G  PN  T + IL AC+ L  +
Sbjct: 281 FEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 340

Query: 270 GFGKQLHAHTIKH--SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIIT 327
             G+ +H +  K    +     + TSL+DMY K G +E A   F+S+ +K L ++ A+I 
Sbjct: 341 DIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIF 400

Query: 328 SYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL 387
            +A  G A+ +   F +MR  GI+ ++ T    L+ CS    L  GR             
Sbjct: 401 GFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGR------------- 447

Query: 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML 447
              +  ++   Y     ++                +  MI      GL ++A E    M 
Sbjct: 448 --HIFRSMTQDYKMTPKLE---------------HYGCMIDLLGHSGLFKEAEEMINTME 490

Query: 448 DEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKF 507
            E   PD + +  +L AC   G +E G+    ++ KI    P    +  + +I   AG++
Sbjct: 491 ME---PDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPENPG--SYVLLSNIYATAGRW 545

Query: 508 TEIEN 512
            E+ N
Sbjct: 546 NEVAN 550


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 164/434 (37%), Positives = 253/434 (58%), Gaps = 2/434 (0%)

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228
           R G+ +HA + K  +E    +   L+ +Y +   +    RV + +  ++ VSW A+ S +
Sbjct: 27  REGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGY 86

Query: 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH 288
                  + L +F +ML+ G  PN  TF  +L +C+S S    G+Q+H+  IK S + + 
Sbjct: 87  SQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHI 146

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
            VG+SL+DMY K+G + +A   FD L  +D+ + TAII+ YAQ G  E AL  FR+++ E
Sbjct: 147 FVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQRE 206

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
           G++SN  T AS L   S +A L +GR +HS  ++      + +  +L+ MY+KCGS+  +
Sbjct: 207 GMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYS 266

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV-PDEITFVVVLSACSH 467
             +F     R   SWN M+ GY KHGLG +A+E F++M +E  V PD +TF+ VLS CSH
Sbjct: 267 RRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSH 326

Query: 468 MGLIEEGKKHFSS-IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVW 526
            G+ + G + F   + +  G  P I+H+ C++D+ GRAG+  E   FI +    P A +W
Sbjct: 327 GGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIW 386

Query: 527 ENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQ 586
            +LLGAC  H N+ + E  A +LLE+E +   NYV  S++ A+ GRW+D   VR L+  +
Sbjct: 387 GSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEK 446

Query: 587 GIKKEPSCSWIEVD 600
            + KEP  SWIE+D
Sbjct: 447 AVIKEPGRSWIELD 460



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/396 (26%), Positives = 199/396 (50%), Gaps = 6/396 (1%)

Query: 42  MKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGL 101
           ++ +E +F  +   +VL    +   I+ GQ VHA  I+       +L   L+ +Y+KC  
Sbjct: 3   IQGLEVEFQGYD--SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRC 60

Query: 102 ADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRA 161
             +A +V   + + +VV+W A+I+   Q+G   EA  +F  M  S   PN+F   +++ +
Sbjct: 61  LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTS 120

Query: 162 TTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSW 221
            T +   + G  IH+++ K  FES   VG++L+ MY + G++    RVF+ +  +D VS 
Sbjct: 121 CTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSC 180

Query: 222 NALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK 281
            A+ S +      ++ L +F ++  +G + N  T+  +L A S L+ +  G+Q+H+H ++
Sbjct: 181 TAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLR 240

Query: 282 HSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKC 341
             L    V+  SL+DMY K G L  +   FDS+  + + ++ A++  Y++ G    A++ 
Sbjct: 241 AKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVEL 300

Query: 342 FRKMRLEG-IKSNEFTLASCLNGCSPVATLANGR--LLHSIAVKTGHLLDMFVSTALVAM 398
           F+ M+ E  +K +  T  + L+GCS       G       +  K G   ++     +V +
Sbjct: 301 FKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDL 360

Query: 399 YAKCGSIDDAEAVFKGSALRDTAS-WNMMIGGYVKH 433
           + + G +++A    K      TA+ W  ++G    H
Sbjct: 361 FGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVH 396



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 166/319 (52%), Gaps = 5/319 (1%)

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M ++G +     +  +L  C S + +  G+++HAH IK   +    + T L+ +Y+K  C
Sbjct: 1   MGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRC 60

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L DA    D +  +++ ++TA+I+ Y+Q G A  AL  F +M + G   NEFT A+ L  
Sbjct: 61  LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTS 120

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+  +    GR +HS+ +KT     +FV ++L+ MYAK G I +A  VF G   RD  S 
Sbjct: 121 CTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSC 180

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK 482
             +I GY + GL E+AL+ FR +  EG   + +T+  VL+A S +  ++ G++ H   ++
Sbjct: 181 TAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLR 240

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
                   +++   +ID+  + G  T     I ++      + W  +L   S HG +  +
Sbjct: 241 AKLPFYVVLQN--SLIDMYSKCGSLT-YSRRIFDSMPERTVISWNAMLVGYSKHG-LGRE 296

Query: 543 EKDAEKLLELEPKMESNYV 561
             +  KL++ E K++ + V
Sbjct: 297 AVELFKLMKEENKVKPDSV 315



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 104/421 (24%), Positives = 184/421 (43%), Gaps = 58/421 (13%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+RV   MPE NVVSW A+++GY++ G   + +HLF  M       ++F+ +TVL    +
Sbjct: 64  ARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTS 123

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           S   + G+ +H++ I+       F+  SL+DMY+K G    A +VF  + + DVV+  AI
Sbjct: 124 SSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAI 183

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   Q G  +EA  +F  ++   ++ N     S++ A +       G  +H+ + +   
Sbjct: 184 ISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKL 243

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
               ++ N+L+ MY + G ++Y  R+F+++  +  +SWNA+   +  +    + + +F  
Sbjct: 244 PFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKL 303

Query: 244 MLLKG-FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           M  +   KP+  TF+ +L  CS                                     G
Sbjct: 304 MKEENKVKPDSVTFLAVLSGCS------------------------------------HG 327

Query: 303 CLEDAG--VAFDSLANKDLFA-----YTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
            +ED G  + ++ +  KD F      Y  ++  + +AG  E A +  +KM  E   +   
Sbjct: 328 GMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAA--- 384

Query: 356 TLASCLNGCS-----PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
              S L  C       +      RLL   +   G+ +       L  +YA  G  DD   
Sbjct: 385 IWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYV------ILSNLYASAGRWDDVRT 438

Query: 411 V 411
           V
Sbjct: 439 V 439


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 175/564 (31%), Positives = 294/564 (52%), Gaps = 37/564 (6%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDM--YSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
           +H+  I++G + D      ++      + G    A +VF  I  P +  W  +I    + 
Sbjct: 26  IHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQPTLFIWNTMIKGYSRI 85

Query: 131 GCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI--HAVICKYGFESDTL 188
              Q    ++ LM  S++KP++F    L++  T     + G+ +  HAV  K+GF+S+  
Sbjct: 86  NHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAV--KHGFDSNLF 143

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG 248
           V  A + M+     V    +VF+     + V+WN + S +   +   +   +F +M  +G
Sbjct: 144 VQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRG 203

Query: 249 FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
             PN  T +++L ACS L D+  GK ++ +     ++ N ++   L+DM+   G +++A 
Sbjct: 204 VSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQ 263

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEM------------------------------- 337
             FD++ N+D+ ++T+I+T +A  G+ ++                               
Sbjct: 264 SVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIE 323

Query: 338 ALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVA 397
           AL  FR+M++  +K +EFT+ S L  C+ +  L  G  + +   K     D FV  AL+ 
Sbjct: 324 ALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALID 383

Query: 398 MYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEIT 457
           MY KCG++  A+ VFK    +D  +W  MI G   +G GE+AL  F  M++    PDEIT
Sbjct: 384 MYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEIT 443

Query: 458 FVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET 517
           ++ VL AC+H G++E+G+  F S+   +GI P + H+ CM+D+LGRAG+  E    I   
Sbjct: 444 YIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNM 503

Query: 518 KLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFS 577
            + PN++VW +LLGAC  H N++L E  A+++LELEP+  + YV   +I A   RW +  
Sbjct: 504 PVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLCNIYAACKRWENLR 563

Query: 578 GVRALLSSQGIKKEPSCSWIEVDG 601
            VR L+  +GIKK P CS +E++G
Sbjct: 564 QVRKLMMERGIKKTPGCSLMELNG 587



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/481 (23%), Positives = 217/481 (45%), Gaps = 33/481 (6%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A++VF ++P+  +  WN ++ GY+     Q  + ++  M     K  +F+   +LKG
Sbjct: 57  MIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKG 116

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           F  +  ++ G+V+   A++ G   + F+  + + M+S C L D A KVF      +VV W
Sbjct: 117 FTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTW 176

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +++  ++    +++  +F  M +  V PN   L  ++ A ++  D   G+ I+  I  
Sbjct: 177 NIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYING 236

Query: 181 YGFESDTLVGNALVSMY---------------MEN----------------GRVSYGSRV 209
              E + ++ N L+ M+               M+N                G++    + 
Sbjct: 237 GIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKY 296

Query: 210 FEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDV 269
           F+ I  +D VSW A+   +       + L +F +M +   KP+  T + IL AC+ L  +
Sbjct: 297 FDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGAL 356

Query: 270 GFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSY 329
             G+ +  +  K+S+  +  VG +L+DMY K G +  A   F  + +KD F +TA+I   
Sbjct: 357 ELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGL 416

Query: 330 AQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR-LLHSIAVKTGHLLD 388
           A  G  E AL  F  M    I  +E T    L  C+    +  G+    S+ ++ G   +
Sbjct: 417 AINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPN 476

Query: 389 MFVSTALVAMYAKCGSIDDAEAVFKGSALR-DTASWNMMIGGYVKHGLGEKALEAFRMML 447
           +     +V +  + G +++A  V     ++ ++  W  ++G    H   + A  A + +L
Sbjct: 477 VTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQIL 536

Query: 448 D 448
           +
Sbjct: 537 E 537



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 140/298 (46%), Gaps = 9/298 (3%)

Query: 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM--YDKSGCLEDAGVAFDSL 314
           I +L+ C S+  +   KQ+H+HTIK  L  + +    ++      +SG +  A   FD++
Sbjct: 11  ISLLEKCKSMYQL---KQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAI 67

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
               LF +  +I  Y++    +  +  +  M    IK + FT    L G +    L  G+
Sbjct: 68  PQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGK 127

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
           +L + AVK G   ++FV  A + M++ C  +D A  VF      +  +WN+M+ GY +  
Sbjct: 128 VLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVK 187

Query: 435 LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITP-TIKH 493
             +K+   F  M   G  P+ +T V++LSACS +  +E GK  +  I    GI    +  
Sbjct: 188 QFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYING--GIVERNLIL 245

Query: 494 FACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551
              +ID+    G+  E ++     K   + + W +++   +  G I+L  K  +++ E
Sbjct: 246 ENVLIDMFAACGEMDEAQSVFDNMK-NRDVISWTSIVTGFANIGQIDLARKYFDQIPE 302


>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
 gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
          Length = 583

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 163/468 (34%), Positives = 260/468 (55%), Gaps = 4/468 (0%)

Query: 134 QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNAL 193
           Q A  ++  M      P+ F    L++A +     R G  +H V+ K G  +D  V N+L
Sbjct: 87  QMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQVHGVVVKLGLLADHYVQNSL 146

Query: 194 VSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
           +  Y   G  S   +VF+ +  +D VSWN+L S F      D+ + +F++M     +P+M
Sbjct: 147 IRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFDEAISVFFRM---DVEPSM 203

Query: 254 CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
            T + +L AC+   D+  GK +H   I+     N V+G +++DMY K+GC  +A   FD 
Sbjct: 204 TTLVSVLAACARNGDLCTGKGIHG-VIERRFKVNLVLGNAMLDMYVKNGCFYEAKNIFDE 262

Query: 314 LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG 373
           L  +D+ ++T +IT   Q+   + +L+ F  MR  GI  +   L S L+ C+ + TL  G
Sbjct: 263 LPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSACASLGTLDFG 322

Query: 374 RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKH 433
             +H    + G   D+ + TA+V MYAKCG I+ A  +F   + R+T +WN ++ G   H
Sbjct: 323 TWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIEMALKIFYSMSQRNTFTWNALLCGLAMH 382

Query: 434 GLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKH 493
           GL  +AL  F +M+  G  P+EITF+ +L+AC H GL++EG+K+F ++ K+Y + P ++H
Sbjct: 383 GLVHEALNLFEVMIISGVKPNEITFLAILTACCHCGLVDEGRKYFDNMSKLYNLLPKLEH 442

Query: 494 FACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELE 553
           + CMID+  RAG   E         + P+ L+W  LL AC+  GNIEL  +  + +LEL+
Sbjct: 443 YGCMIDLFCRAGLLEEAVELARTMPMKPDVLIWGLLLNACTTVGNIELSHRIQDYILELD 502

Query: 554 PKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
                 +V  S+ISA   RW++ + +R L+  +G++K P  S IEVDG
Sbjct: 503 HDDSGVFVLLSNISAINQRWSNVTRLRRLMKDRGVRKAPGSSVIEVDG 550



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/384 (27%), Positives = 182/384 (47%), Gaps = 12/384 (3%)

Query: 158 LVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQD 217
           L+ +  +  + R    IHA +   G   D  V + ++  +     V YG    + +   +
Sbjct: 8   LLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFAN--FVEYGDYACDYLEQGN 65

Query: 218 ----SVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGK 273
               S  +N+L + +   E P   + ++ +M+  GF P+M TF V+LKACS+ S    G+
Sbjct: 66  TRLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGR 125

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
           Q+H   +K  L  +H V  SL+  Y   G    AG  FD +  +D+ ++ ++I+ + +AG
Sbjct: 126 QVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAG 185

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST 393
             + A+  F +M +E   +   TL S L  C+    L  G+ +H + ++    +++ +  
Sbjct: 186 HFDEAISVFFRMDVEPSMT---TLVSVLAACARNGDLCTGKGIHGV-IERRFKVNLVLGN 241

Query: 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP 453
           A++ MY K G   +A+ +F     RD  SW +MI G V+    +++LE F MM   G  P
Sbjct: 242 AMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISP 301

Query: 454 DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENF 513
           D I    VLSAC+ +G ++ G      I +  GI   I     ++D+  + G   E+   
Sbjct: 302 DAIILTSVLSACASLGTLDFGTWVHEYINQ-RGIKWDIHIGTAIVDMYAKCGCI-EMALK 359

Query: 514 ITETKLTPNALVWENLLGACSWHG 537
           I  +    N   W  LL   + HG
Sbjct: 360 IFYSMSQRNTFTWNALLCGLAMHG 383



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 175/337 (51%), Gaps = 6/337 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A +VF  M   +VVSWN+L++G+ ++G   + + +F  M D+E   +  +L +VL   A 
Sbjct: 159 AGKVFDEMLVRDVVSWNSLISGFMKAGHFDEAISVFFRM-DVEPSMT--TLVSVLAACAR 215

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +G +  G+ +H + I     ++  L  +++DMY K G    A  +F  +   D+V+W  +
Sbjct: 216 NGDLCTGKGIHGV-IERRFKVNLVLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIM 274

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           IT L Q    +++ ++F++MR   + P+  +LTS++ A    G    G  +H  I + G 
Sbjct: 275 ITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSACASLGTLDFGTWVHEYINQRGI 334

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           + D  +G A+V MY + G +    ++F +++ +++ +WNAL      +    + L +F  
Sbjct: 335 KWDIHIGTAIVDMYAKCGCIEMALKIFYSMSQRNTFTWNALLCGLAMHGLVHEALNLFEV 394

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK-HSLDGNHVVGTSLVDMYDKSG 302
           M++ G KPN  TF+ IL AC     V  G++   +  K ++L         ++D++ ++G
Sbjct: 395 MIISGVKPNEITFLAILTACCHCGLVDEGRKYFDNMSKLYNLLPKLEHYGCMIDLFCRAG 454

Query: 303 CLEDAGVAFDSLANK-DLFAYTAIITSYAQAGEAEMA 338
            LE+A     ++  K D+  +  ++ +    G  E++
Sbjct: 455 LLEEAVELARTMPMKPDVLIWGLLLNACTTVGNIELS 491



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 5/168 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E+A ++F SM + N  +WNALL G A  G   + ++LF  M     K ++ +   +L  
Sbjct: 354 IEMALKIFYSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTA 413

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKF--LSCSLVDMYSKCGLADNALKVFYRIK-DPDV 117
             + G +  G+       +L   L K     C ++D++ + GL + A+++   +   PDV
Sbjct: 414 CCHCGLVDEGRKYFDNMSKLYNLLPKLEHYGC-MIDLFCRAGLLEEAVELARTMPMKPDV 472

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRE-SSVKPNQFVLTSLVRATTE 164
           + WG ++      G  + + +I + + E        FVL S + A  +
Sbjct: 473 LIWGLLLNACTTVGNIELSHRIQDYILELDHDDSGVFVLLSNISAINQ 520


>gi|297811443|ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319442|gb|EFH49864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 750

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 181/584 (30%), Positives = 302/584 (51%), Gaps = 3/584 (0%)

Query: 20  NALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIR 79
           N  L   ++ G   +    F  M       S +S   + +       +  G+++H   +R
Sbjct: 50  NLHLVSLSKHGKLNEAFEFFQEMDKAGVSVSLYSYQCLFEACRELRSLSHGRLLHN-RMR 108

Query: 80  LGCALDK-FLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAK 138
           +G       L   ++ MY +CG  ++A K+F  + D + V+   +I+   +QG   +A  
Sbjct: 109 MGIENPSVLLQNCVLQMYCECGSLEDADKLFDEMSDLNAVSRTTMISAYAEQGLLDKAVG 168

Query: 139 IFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYM 198
           +F+ M ES  KP   + T+L+++         G  IHA + + G  S+  +   +V+MY+
Sbjct: 169 LFSRMLESGDKPPSSMYTTLLKSLVNPRALDIGRQIHAHVIRAGLCSNASIETGIVNMYV 228

Query: 199 ENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIV 258
           + G +    RVF+ +A +  V+W  L   +         L++F  ++ +G + +   F V
Sbjct: 229 KCGWLVGAKRVFDQMAVKKPVAWTGLMVGYTQAGRARDALKLFVDLITEGVEWDSFVFSV 288

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKD 318
           +LKAC+SL ++ FGKQ+HA   K  L+    VGT LVD Y K    E A  AF  +   +
Sbjct: 289 VLKACASLEELRFGKQIHACVAKLGLECEVSVGTPLVDFYIKCSSFESACRAFQEIREPN 348

Query: 319 LFAYTAIITSYAQAGEAEMALKCFRKMRLE-GIKSNEFTLASCLNGCSPVATLANGRLLH 377
             +++AII+ Y Q  + E A+K F+ +R +  +  N FT  S    CS +A    G  +H
Sbjct: 349 DVSWSAIISGYCQMSQFEEAVKTFKSLRSKNAVVLNSFTYTSIFQACSVLADCNIGGQVH 408

Query: 378 SIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGE 437
           + A+K   +   +  +AL+ MY+KCG +DDA  VF+     D  +W   I G+  +G   
Sbjct: 409 ADAIKRSLIGSQYGESALITMYSKCGCLDDAHEVFESMDNPDIVAWTAFISGHAYYGNAS 468

Query: 438 KALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACM 497
           +AL  F  M+  G  P+ +TF+ VL+ACSH GL+E+GK +  ++ + Y + PTI H+ CM
Sbjct: 469 EALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHYLDTMLRKYNVAPTIDHYDCM 528

Query: 498 IDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKME 557
           IDI  R+G   E   F+      P+A+ W+  L  C  H N+EL +   E+L +L+P+  
Sbjct: 529 IDIYARSGLLDEALRFMKNMPFEPDAMSWKCFLSGCWTHKNLELGKIAGEELRQLDPEDT 588

Query: 558 SNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           + YV P ++    G+W + + V  L++ + +KKE SCSWI+  G
Sbjct: 589 AGYVLPFNLYTWAGKWEEAAEVMKLMNERMLKKELSCSWIQEKG 632



 Score =  214 bits (546), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 143/461 (31%), Positives = 224/461 (48%), Gaps = 9/461 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A ++F  M +LN VS   +++ YAE G   K + LF  M +   K      +T+LK 
Sbjct: 132 LEDADKLFDEMSDLNAVSRTTMISAYAEQGLLDKAVGLFSRMLESGDKPPSSMYTTLLKS 191

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             N   +  G+ +HA  IR G   +  +   +V+MY KCG    A +VF ++     VAW
Sbjct: 192 LVNPRALDIGRQIHAHVIRAGLCSNASIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVAW 251

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             ++    Q G  ++A K+F  +    V+ + FV + +++A     + R G+ IHA + K
Sbjct: 252 TGLMVGYTQAGRARDALKLFVDLITEGVEWDSFVFSVVLKACASLEELRFGKQIHACVAK 311

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G E +  VG  LV  Y++        R F+ I   + VSW+A+ S +      ++ ++ 
Sbjct: 312 LGLECEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKT 371

Query: 241 FYQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           F  +  K     N  T+  I +ACS L+D   G Q+HA  IK SL G+    ++L+ MY 
Sbjct: 372 FKSLRSKNAVVLNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGESALITMYS 431

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K GCL+DA   F+S+ N D+ A+TA I+ +A  G A  AL+ F KM   G+K N  T  +
Sbjct: 432 KCGCLDDAHEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIA 491

Query: 360 CLNGCSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
            L  CS    +  G+  L ++  K      +     ++ +YA+ G +D+A    K     
Sbjct: 492 VLTACSHAGLVEQGKHYLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEALRFMKNMPFE 551

Query: 419 -DTASWNMMIGGYVKHG---LGEKALEAFRMMLDE---GYV 452
            D  SW   + G   H    LG+ A E  R +  E   GYV
Sbjct: 552 PDAMSWKCFLSGCWTHKNLELGKIAGEELRQLDPEDTAGYV 592


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 187/582 (32%), Positives = 297/582 (51%), Gaps = 44/582 (7%)

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDM--YSKCGLADNALKVFYRIKDPDVV 118
           F      K  + +HA  +R     D + +  L     +S     D A KVF +I  P++ 
Sbjct: 146 FQQCTSFKQLKQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQPNLY 205

Query: 119 AWGAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRC---GESI 174
           +W  +I  L       ++  +F  ++ +S   PN+F    L++A  E   +RC   G+++
Sbjct: 206 SWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAE---RRCFLVGKAV 262

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA--HQDSVSWNALFSRFQDYE 232
           H +  K  F  D  V N+L+  Y   G +     VFE I   ++D VSWN++ + F    
Sbjct: 263 HGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGG 322

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
            PD+ L +F +M  +G  PN  T + ++ AC+   ++  G+++  +  ++ +  N  V  
Sbjct: 323 YPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCN 382

Query: 293 SLVDMYDKSGCLEDA----------------------------GVA---FDSLANKDLFA 321
           + +DM+ K G +E A                            G+A   FDS+  KD+ A
Sbjct: 383 ATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPA 442

Query: 322 YTAIITSYAQAGEAEMALKCFRKMRL--EGIKSNEFTLASCLNGCSPVATLANGRLLHSI 379
           +  +I+ Y Q+G  + AL  FR+++L   G + ++ TL S L+ C+ +  +  G  +H  
Sbjct: 443 WNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGY 502

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
             K    L+  ++T+L+ MY+K G ++ A  VF     +D   W+ MI G   HG GE A
Sbjct: 503 IKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAA 562

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMID 499
           +E F  M +    P+ +TF  +L ACSH GL++EGK+ F  ++++YG+ P  KH++CM+D
Sbjct: 563 IELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVD 622

Query: 500 ILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESN 559
           +LGRAG   E   FI    L P+A VW  LLGAC  HGN+EL EK   +LLE+EP     
Sbjct: 623 VLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLEIEPGNHGA 682

Query: 560 YVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           YV  S++ A  G W   S +R  +   G+KKE  CS IE+DG
Sbjct: 683 YVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEIDG 724



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 136/486 (27%), Positives = 223/486 (45%), Gaps = 53/486 (10%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLK 59
           ++ A++VF  +P+ N+ SWN L+   A S D  + + +F  M  D     +KF+   ++K
Sbjct: 189 LDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIK 248

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK--DPDV 117
             A       G+ VH MAI+     D F+  SL+  Y+ CG  D A  VF  I+  + D+
Sbjct: 249 AVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDI 308

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           V+W +++T   Q G   +A  +F  MR   V PN   + S++ A  +T +   G  +   
Sbjct: 309 VSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDY 368

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS----------------- 220
           I +     +  V NA + M+++ G V     +F+ +  +D VS                 
Sbjct: 369 IDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIA 428

Query: 221 --------------WNALFSRFQDYESPDQGLRIFYQMLL--KGFKPNMCTFIVILKACS 264
                         WN L S ++    P + L IF ++ L   G +P+  T +  L AC+
Sbjct: 429 RDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACA 488

Query: 265 SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA 324
            L  +  G+ +H +  K  +  N  + TSL+DMY KSG +E A   F S+ NKD+F ++A
Sbjct: 489 QLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSA 548

Query: 325 IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL-------H 377
           +I   A  G  E A++ F  M+   +K N  T  + L  CS    +  G+ L       +
Sbjct: 549 MIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVY 608

Query: 378 SIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS-WNMMIGGYVKHG-- 434
            +  KT H       + +V +  + G +++A    +G  L  +AS W  ++G    HG  
Sbjct: 609 GVVPKTKHY------SCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNL 662

Query: 435 -LGEKA 439
            L EKA
Sbjct: 663 ELAEKA 668


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 183/601 (30%), Positives = 309/601 (51%), Gaps = 11/601 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMK---DMEKKFSKFSLS-TVLK 59
           A+ +F S+   +V  +N L+ G++ +      + +F  ++   D++   S ++ + +   
Sbjct: 71  ARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAAS 130

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           GF +    +AG+V+H  A+  GC  +  L  ++V MY K    ++A KVF R+ + D + 
Sbjct: 131 GFRDD---RAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTIL 187

Query: 120 WGAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           W  +I+   +     E+ ++F +L+ ES  + +   L  ++ A  E  + R G  IH++ 
Sbjct: 188 WNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLA 247

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K G  S   V    +S+Y + G++  GS +F      D V++NA+   +      +  L
Sbjct: 248 TKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSL 307

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            +F +++L G +    T + ++     L  +     +H + +K +   +  V T+L  +Y
Sbjct: 308 SLFKELMLSGARLRSSTLVSLVPVSGHLMLI---YAIHGYCLKSNFLSHASVSTALTTVY 364

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K   +E A   FD    K L ++ A+I+ Y Q G  E A+  FR+M+      N  T+ 
Sbjct: 365 SKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTIT 424

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
             L+ C+ +  L+ G+ +H +   T     ++VSTAL+ MYAKCGSI +A  +F     +
Sbjct: 425 CILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKK 484

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           +  +WN MI GY  HG G++AL  F  ML+ G  P  +TF+ VL ACSH GL++EG + F
Sbjct: 485 NEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIF 544

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           +S+   YG  P++KH+ACM+DILGRAG       FI    + P + VWE LLGAC  H +
Sbjct: 545 NSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKD 604

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
             L    +EKL EL+P     +V  S+I +    +   + VR     + + K P  + IE
Sbjct: 605 TNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIE 664

Query: 599 V 599
           +
Sbjct: 665 I 665



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 113/473 (23%), Positives = 204/473 (43%), Gaps = 22/473 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDME-KKFSKFSLSTVLK 59
           +E A++VF  MPE + + WN +++GY ++    + + +F  + +    +    +L  +L 
Sbjct: 170 VEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILP 229

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             A    ++ G  +H++A + GC    ++    + +YSKCG       +F   + PD+VA
Sbjct: 230 AVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVA 289

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           + A+I      G  + +  +F  +  S  +     L SLV     +G      +IH    
Sbjct: 290 YNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPV---SGHLMLIYAIHGYCL 346

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K  F S   V  AL ++Y +   +    ++F+    +   SWNA+ S +      +  + 
Sbjct: 347 KSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAIS 406

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F +M    F PN  T   IL AC+ L  +  GK +H        + +  V T+L+ MY 
Sbjct: 407 LFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYA 466

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G + +A   FD +  K+   +  +I+ Y   G+ + AL  F +M   GI     T   
Sbjct: 467 KCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLC 526

Query: 360 CLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
            L  CS    +  G  + +S+  + G    +     +V +  + G +  A    +  ++ 
Sbjct: 527 VLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIE 586

Query: 419 DTAS-WNMMIGGYVKH-------GLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
             +S W  ++G    H        + EK  E     LD    PD + + V+LS
Sbjct: 587 PGSSVWETLLGACRIHKDTNLARTVSEKLFE-----LD----PDNVGYHVLLS 630



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 136/299 (45%), Gaps = 2/299 (0%)

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           HA I  +GF +D  +   L     + G + Y   +F ++   D   +N L   F   ESP
Sbjct: 40  HAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESP 99

Query: 235 DQGLRIFYQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
              L +F  +      KPN  T+   + A S   D   G+ +H   +    D   ++G++
Sbjct: 100 HSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSN 159

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG-IKS 352
           +V MY K   +EDA   FD +  KD   +  +I+ Y +      +++ FR +  E   + 
Sbjct: 160 IVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRL 219

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
           +  TL   L   + +  L  G  +HS+A KTG     +V T  +++Y+KCG I    A+F
Sbjct: 220 DTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALF 279

Query: 413 KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           +     D  ++N MI GY  +G  E +L  F+ ++  G      T V ++    H+ LI
Sbjct: 280 REFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLI 338


>gi|347954466|gb|AEP33733.1| chlororespiratory reduction 21, partial [Lepidium sativum]
          Length = 805

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 177/603 (29%), Positives = 315/603 (52%), Gaps = 40/603 (6%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF  +PE NVV+WNAL+ GY ++G  ++ + L   M+    + ++ ++ST L   AN
Sbjct: 205 ARMVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASAN 264

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G I+ G+  HA+AI  G  LD  L  S+++ Y K GL + A  +F RI   D+V W  +
Sbjct: 265 MGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDRIIGKDIVTWNLL 324

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   QQG   +A  +  LMR  +++ +   L++L+ A   T +   G+ +     ++ F
Sbjct: 325 ISGYVQQGLVDDAMYMCKLMRLENLRYDSVTLSTLMSAAARTQNLNLGKEVQCYSIRHSF 384

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           ES+ ++ ++ V MY + G +    +VFE+ A +D + WN L + + D     + L++FY 
Sbjct: 385 ESEIVLASSTVDMYAKCGSIVDAKKVFESTAEKDLILWNTLLAAYADSGLSGEALKLFYD 444

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           MLL+   PN+ T+                                    S++  + ++G 
Sbjct: 445 MLLESVPPNIITW-----------------------------------NSIILSFLRNGQ 469

Query: 304 LEDAGVAFDSLANKDLF----AYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           +++A   F  + +  +F    ++T ++  + Q G +E A+   RKM+  G++ N FT++ 
Sbjct: 470 VDEAKEMFLQMQSSGIFPNLISWTTMMNGWVQNGCSEEAIIFLRKMQESGLRPNAFTISV 529

Query: 360 CLNGCSPVATLANGRLLHSIAVKT-GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
            L+ C+ + +L  GR +H   ++   H   +   T+LV +YAKCG I+ AE VF      
Sbjct: 530 ALSACTHLVSLNFGRSIHGYIIRNFQHSSSVSFETSLVDLYAKCGDINQAEKVFGNKLYD 589

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           +    N MI  Y  +G  ++++  +R + D    PD ITF  +L AC+H G I +    F
Sbjct: 590 ELPLHNAMISAYALYGNVKESITLYRRLEDMAMKPDNITFTSLLYACTHAGDIVQAINIF 649

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           + +   + + P ++H+  M+DIL  +G+  +    I E    P+A + ++L+ +C+    
Sbjct: 650 TEMVSKHDMKPCLEHYGLMVDILASSGETNKALELIEEMPYKPDARMIQSLVASCNKQHK 709

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
            EL +  + +LLE EP+   NYV  S+  A +G WN+   +R ++ ++G+KK+P CSWI+
Sbjct: 710 TELVDYLSRQLLESEPENSGNYVTISNAYAIEGSWNEVMKMREMMKAKGLKKKPGCSWIQ 769

Query: 599 VDG 601
           + G
Sbjct: 770 IKG 772



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 140/573 (24%), Positives = 265/573 (46%), Gaps = 47/573 (8%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E+A+ +F  +   NV SW A++      G  +  +  F  M +       + +  V K 
Sbjct: 101 LEVAQDLFSRLRVRNVFSWAAIIGLKCRIGLCEGALLGFVEMLENGVLPDNYVVPNVCKA 160

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                +   G+ VH   ++ G     F++ SL DMY KCG+ D+A  VF  I + +VVAW
Sbjct: 161 CGALHWSWFGRGVHGYVLKAGLHDCVFVASSLADMYGKCGVLDDARMVFDEIPERNVVAW 220

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A++    Q G  +EA ++ + MR+  ++P +  +++ + A+   G    G+  HA+   
Sbjct: 221 NALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIV 280

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G E D ++G ++++ Y + G + Y   +F+ I  +D V+WN L S +      D  + +
Sbjct: 281 NGLELDNILGTSILNFYCKVGLIEYAEMIFDRIIGKDIVTWNLLISGYVQQGLVDDAMYM 340

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
              M L+  + +  T   ++ A +   ++  GK++  ++I+HS +   V+ +S VDMY K
Sbjct: 341 CKLMRLENLRYDSVTLSTLMSAAARTQNLNLGKEVQCYSIRHSFESEIVLASSTVDMYAK 400

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G + DA   F+S A KDL  +  ++ +YA +G +  ALK F  M LE +  N  T  S 
Sbjct: 401 CGSIVDAKKVFESTAEKDLILWNTLLAAYADSGLSGEALKLFYDMLLESVPPNIITWNS- 459

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF----KGSA 416
                                             ++  + + G +D+A+ +F        
Sbjct: 460 ----------------------------------IILSFLRNGQVDEAKEMFLQMQSSGI 485

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
             +  SW  M+ G+V++G  E+A+   R M + G  P+  T  V LSAC+H+  +  G+ 
Sbjct: 486 FPNLISWTTMMNGWVQNGCSEEAIIFLRKMQESGLRPNAFTISVALSACTHLVSLNFGRS 545

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
               I + +  + ++     ++D+  + G   + E  +   KL     +   ++ A + +
Sbjct: 546 IHGYIIRNFQHSSSVSFETSLVDLYAKCGDINQAEK-VFGNKLYDELPLHNAMISAYALY 604

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDISAT 569
           GN+       ++ + L  ++E   + P +I+ T
Sbjct: 605 GNV-------KESITLYRRLEDMAMKPDNITFT 630



 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 134/483 (27%), Positives = 246/483 (50%), Gaps = 6/483 (1%)

Query: 57  VLKGFANSGYIKAGQVVHAMAIRLGC--ALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
           +L+G      +  GQ +HA  ++ G   A ++++   L+  Y+KC   + A  +F R++ 
Sbjct: 54  ILQGCVYERDLCTGQQIHARILKNGAFYARNEYIETKLLIFYAKCDALEVAQDLFSRLRV 113

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
            +V +W AII    + G C+ A   F  M E+ V P+ +V+ ++ +A         G  +
Sbjct: 114 RNVFSWAAIIGLKCRIGLCEGALLGFVEMLENGVLPDNYVVPNVCKACGALHWSWFGRGV 173

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H  + K G      V ++L  MY + G +     VF+ I  ++ V+WNAL   +      
Sbjct: 174 HGYVLKAGLHDCVFVASSLADMYGKCGVLDDARMVFDEIPERNVVAWNALMVGYVQNGMN 233

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
           ++ +R+   M  +G +P   T    L A +++  +  GKQ HA  I + L+ ++++GTS+
Sbjct: 234 EEAIRLLSDMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSI 293

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           ++ Y K G +E A + FD +  KD+  +  +I+ Y Q G  + A+   + MRLE ++ + 
Sbjct: 294 LNFYCKVGLIEYAEMIFDRIIGKDIVTWNLLISGYVQQGLVDDAMYMCKLMRLENLRYDS 353

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            TL++ ++  +    L  G+ +   +++     ++ ++++ V MYAKCGSI DA+ VF+ 
Sbjct: 354 VTLSTLMSAAARTQNLNLGKEVQCYSIRHSFESEIVLASSTVDMYAKCGSIVDAKKVFES 413

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
           +A +D   WN ++  Y   GL  +AL+ F  ML E   P+ IT+  ++ +    G ++E 
Sbjct: 414 TAEKDLILWNTLLAAYADSGLSGEALKLFYDMLLESVPPNIITWNSIILSFLRNGQVDEA 473

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFI---TETKLTPNALVWENLLG 531
           K+ F  ++   GI P +  +  M++   + G   E   F+    E+ L PNA      L 
Sbjct: 474 KEMFLQMQS-SGIFPNLISWTTMMNGWVQNGCSEEAIIFLRKMQESGLRPNAFTISVALS 532

Query: 532 ACS 534
           AC+
Sbjct: 533 ACT 535



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 165/370 (44%), Gaps = 40/370 (10%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ +F  +   ++V+WN L++GY + G     M++   M+    ++   +LST++  
Sbjct: 303 IEYAEMIFDRIIGKDIVTWNLLISGYVQQGLVDDAMYMCKLMRLENLRYDSVTLSTLMSA 362

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A +  +  G+ V   +IR     +  L+ S VDMY+KCG   +A KVF    + D++ W
Sbjct: 363 AARTQNLNLGKEVQCYSIRHSFESEIVLASSTVDMYAKCGSIVDAKKVFESTAEKDLILW 422

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             ++      G   EA K+F  M   SV PN                             
Sbjct: 423 NTLLAAYADSGLSGEALKLFYDMLLESVPPN----------------------------- 453

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ----DSVSWNALFSRFQDYESPDQ 236
                  +  N+++  ++ NG+V     +F  +       + +SW  + + +      ++
Sbjct: 454 ------IITWNSIILSFLRNGQVDEAKEMFLQMQSSGIFPNLISWTTMMNGWVQNGCSEE 507

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGTSLV 295
            +    +M   G +PN  T  V L AC+ L  + FG+ +H + I++    + V   TSLV
Sbjct: 508 AIIFLRKMQESGLRPNAFTISVALSACTHLVSLNFGRSIHGYIIRNFQHSSSVSFETSLV 567

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
           D+Y K G +  A   F +    +L  + A+I++YA  G  + ++  +R++    +K +  
Sbjct: 568 DLYAKCGDINQAEKVFGNKLYDELPLHNAMISAYALYGNVKESITLYRRLEDMAMKPDNI 627

Query: 356 TLASCLNGCS 365
           T  S L  C+
Sbjct: 628 TFTSLLYACT 637



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 2/156 (1%)

Query: 312 DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLA 371
           D   N    +Y   I+S  + GE   AL+  ++M    ++         L GC     L 
Sbjct: 6   DRAGNPSSSSYFHQISSLCKHGEIREALRLVKEMDFRNVRIGPEIYGEILQGCVYERDLC 65

Query: 372 NGRLLHSIAVKTG--HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
            G+ +H+  +K G  +  + ++ T L+  YAKC +++ A+ +F    +R+  SW  +IG 
Sbjct: 66  TGQQIHARILKNGAFYARNEYIETKLLIFYAKCDALEVAQDLFSRLRVRNVFSWAAIIGL 125

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC 465
             + GL E AL  F  ML+ G +PD      V  AC
Sbjct: 126 KCRIGLCEGALLGFVEMLENGVLPDNYVVPNVCKAC 161


>gi|5262217|emb|CAB45843.1| putative protein [Arabidopsis thaliana]
 gi|7268873|emb|CAB79077.1| putative protein [Arabidopsis thaliana]
          Length = 740

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 183/602 (30%), Positives = 311/602 (51%), Gaps = 46/602 (7%)

Query: 6   RVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVL------K 59
           RVF+S+ + N VS+ A++ G A      + + +F  M +   +     LS +L      +
Sbjct: 161 RVFESLSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLSNILSISAPRE 220

Query: 60  GFANSGYI---KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD 116
           G  +   I   + G+ +H +A+RLG   D  L+ SL+++Y+K    + A  +F  + + +
Sbjct: 221 GCDSLSEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVN 280

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
           VV+W  +I    Q+    ++ +    MR+S  +PN+    S++ A   +GD         
Sbjct: 281 VVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGD--------- 331

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
                                     V  G R+F +I      +WNA+ S + +YE  ++
Sbjct: 332 --------------------------VETGRRIFSSIPQPSVSAWNAMLSGYSNYEHYEE 365

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            +  F QM  +  KP+  T  VIL +C+ L  +  GKQ+H   I+  +  N  + + L+ 
Sbjct: 366 AISNFRQMQFQNLKPDKTTLSVILSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIA 425

Query: 297 MYDKSGCLEDAGVAFDSLANK-DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK-SNE 354
           +Y +   +E +   FD   N+ D+  + ++I+ +        AL  FR+M    +   NE
Sbjct: 426 VYSECEKMEISECIFDDCINELDIACWNSMISGFRHNMLDTKALILFRRMHQTAVLCPNE 485

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            + A+ L+ CS + +L +GR  H + VK+G++ D FV TAL  MY KCG ID A   F  
Sbjct: 486 TSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMYCKCGEIDSARQFFDA 545

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
              ++T  WN MI GY  +G G++A+  +R M+  G  PD ITFV VL+ACSH GL+E G
Sbjct: 546 VLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLTACSHSGLVETG 605

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
            +  SS+++I+GI P + H+ C++D LGRAG+  + E     T    ++++WE LL +C 
Sbjct: 606 LEILSSMQRIHGIEPELDHYICIVDCLGRAGRLEDAEKLAEATPYKSSSVLWEILLSSCR 665

Query: 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSC 594
            HG++ L  + AEKL+ L+P+  + YV  S+  ++  +W+D + ++ L++   + K P  
Sbjct: 666 VHGDVSLARRVAEKLMRLDPQSSAAYVLLSNTYSSLRQWDDSAALQGLMNKNRVHKTPGQ 725

Query: 595 SW 596
           SW
Sbjct: 726 SW 727



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 136/540 (25%), Positives = 257/540 (47%), Gaps = 51/540 (9%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A  VF  MPE +VVSWN +++     G  +K + ++  M       S+F+L++VL   + 
Sbjct: 57  ACEVFDGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLASVLSACSK 116

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCG-LADNALKVFYRIKDPDVVAWGA 122
                 G   H +A++ G   + F+  +L+ MY+KCG + D  ++VF  +  P+ V++ A
Sbjct: 117 VLDGVFGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVRVFESLSQPNEVSYTA 176

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRAT---------TETGDQRCGES 173
           +I  L ++    EA ++F LM E  V+ +   L++++  +         +E      G+ 
Sbjct: 177 VIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLSNILSISAPREGCDSLSEIYGNELGKQ 236

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF-QDYE 232
           IH +  + GF  D  + N+L+ +Y +N  ++    +F  +   + VSWN +   F Q+Y 
Sbjct: 237 IHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWNIMIVGFGQEYR 296

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
           S D+ +    +M   GF+PN  T I +L AC    DV  G+++                 
Sbjct: 297 S-DKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGDVETGRRI----------------- 338

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
                             F S+    + A+ A+++ Y+     E A+  FR+M+ + +K 
Sbjct: 339 ------------------FSSIPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKP 380

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
           ++ TL+  L+ C+ +  L  G+ +H + ++T    +  + + L+A+Y++C  ++ +E +F
Sbjct: 381 DKTTLSVILSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSECEKMEISECIF 440

Query: 413 KGSALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV-PDEITFVVVLSACSHMGL 470
                  D A WN MI G+  + L  KAL  FR M     + P+E +F  VLS+CS +  
Sbjct: 441 DDCINELDIACWNSMISGFRHNMLDTKALILFRRMHQTAVLCPNETSFATVLSSCSRLCS 500

Query: 471 IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
           +  G++    + K   ++ +    A + D+  + G+      F  +  L  N ++W  ++
Sbjct: 501 LLHGRQFHGLVVKSGYVSDSFVETA-LTDMYCKCGEIDSARQFF-DAVLRKNTVIWNEMI 558



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/362 (28%), Positives = 184/362 (50%), Gaps = 18/362 (4%)

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           D    NA ++   + G +     VF+ +  +D VSWN + S        ++ L ++ +M+
Sbjct: 37  DVYSWNAFLTFRCKVGDLGEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMV 96

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
             GF P+  T   +L ACS + D  FG + H   +K  LD N  VG +L+ MY K G + 
Sbjct: 97  CDGFLPSRFTLASVLSACSKVLDGVFGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFIV 156

Query: 306 DAGV-AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK------SNEFTLA 358
           D GV  F+SL+  +  +YTA+I   A+  +   A++ FR M  +G++      SN  +++
Sbjct: 157 DYGVRVFESLSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLSNILSIS 216

Query: 359 SCLNGCSPVATLAN---GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
           +   GC  ++ +     G+ +H +A++ G   D+ ++ +L+ +YAK   ++ AE +F   
Sbjct: 217 APREGCDSLSEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEM 276

Query: 416 ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
              +  SWN+MI G+ +    +K++E    M D G+ P+E+T + VL AC   G +E G+
Sbjct: 277 PEVNVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGDVETGR 336

Query: 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTE-IENF--ITETKLTPNALVWENLLGA 532
           + FSSI +     P++  +  M+        + E I NF  +    L P+      +L +
Sbjct: 337 RIFSSIPQ-----PSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSS 391

Query: 533 CS 534
           C+
Sbjct: 392 CA 393



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/438 (24%), Positives = 189/438 (43%), Gaps = 76/438 (17%)

Query: 80  LGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKI 139
           +G   D +L   L+D+Y +CG  D A KVF  +   DV +W A +T   + G   EA ++
Sbjct: 1   MGMKSDTYLCNRLLDLYIECGDGDYARKVFDEMSVRDVYSWNAFLTFRCKVGDLGEACEV 60

Query: 140 FNLMRESSVK-------------------------------PNQFVLTSLVRATTETGDQ 168
           F+ M E  V                                P++F L S++ A ++  D 
Sbjct: 61  FDGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLASVLSACSKVLDG 120

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENG-RVSYGSRVFEAIAHQDSVSWNALFSR 227
             G   H V  K G + +  VGNAL+SMY + G  V YG RVFE+++  + VS+ A+   
Sbjct: 121 VFGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVRVFESLSQPNEVSYTAVIGG 180

Query: 228 FQDYESPDQGLRIFYQMLLKGFK------PNMCTFIVILKACSSLSDV---GFGKQLHAH 278
                   + +++F  M  KG +       N+ +     + C SLS++     GKQ+H  
Sbjct: 181 LARENKVLEAVQMFRLMCEKGVQVDSVCLSNILSISAPREGCDSLSEIYGNELGKQIHCL 240

Query: 279 TIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMA 338
            ++    G+  +  SL+++Y K+  +  A + F  +   ++ ++  +I  + Q   ++ +
Sbjct: 241 ALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWNIMIVGFGQEYRSDKS 300

Query: 339 LKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAM 398
           ++   +MR  G + NE T  S L  C                                  
Sbjct: 301 VEFLTRMRDSGFQPNEVTCISVLGAC---------------------------------- 326

Query: 399 YAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITF 458
             + G ++    +F        ++WN M+ GY  +   E+A+  FR M  +   PD+ T 
Sbjct: 327 -FRSGDVETGRRIFSSIPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTL 385

Query: 459 VVVLSACSHMGLIEEGKK 476
            V+LS+C+ +  +E GK+
Sbjct: 386 SVILSSCARLRFLEGGKQ 403



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/444 (22%), Positives = 190/444 (42%), Gaps = 51/444 (11%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A+ +F  MPE+NVVSWN ++ G+ +     K +     M+D   + ++ +  +VL  
Sbjct: 266 MNGAELIFAEMPEVNVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGA 325

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              SG ++ G+                                   ++F  I  P V AW
Sbjct: 326 CFRSGDVETGR-----------------------------------RIFSSIPQPSVSAW 350

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+++        +EA   F  M+  ++KP++  L+ ++ +         G+ IH V+ +
Sbjct: 351 NAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCARLRFLEGGKQIHGVVIR 410

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVF-EAIAHQDSVSWNALFSRFQDYESPDQGLR 239
                ++ + + L+++Y E  ++     +F + I   D   WN++ S F+      + L 
Sbjct: 411 TEISKNSHIVSGLIAVYSECEKMEISECIFDDCINELDIACWNSMISGFRHNMLDTKALI 470

Query: 240 IFYQMLLKG-FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           +F +M       PN  +F  +L +CS L  +  G+Q H   +K     +  V T+L DMY
Sbjct: 471 LFRRMHQTAVLCPNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMY 530

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G ++ A   FD++  K+   +  +I  Y   G  + A+  +RKM   G K +  T  
Sbjct: 531 CKCGEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFV 590

Query: 359 SCLNGCSPVATLANG-------RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
           S L  CS    +  G       + +H I  +  H +       +V    + G ++DAE +
Sbjct: 591 SVLTACSHSGLVETGLEILSSMQRIHGIEPELDHYI------CIVDCLGRAGRLEDAEKL 644

Query: 412 FKGSALRDTAS-WNMMIGGYVKHG 434
            + +  + ++  W +++     HG
Sbjct: 645 AEATPYKSSSVLWEILLSSCRVHG 668



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 179/368 (48%), Gaps = 13/368 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E  +R+F S+P+ +V +WNA+L+GY+     ++ +  F  M+    K  K +LS +L  
Sbjct: 332 VETGRRIFSSIPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSS 391

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYR-IKDPDVVA 119
            A   +++ G+ +H + IR   + +  +   L+ +YS+C   + +  +F   I + D+  
Sbjct: 392 CARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSECEKMEISECIFDDCINELDIAC 451

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVK-PNQFVLTSLVRATTETGDQRCGESIHAVI 178
           W ++I+         +A  +F  M +++V  PN+    +++ + +       G   H ++
Sbjct: 452 WNSMISGFRHNMLDTKALILFRRMHQTAVLCPNETSFATVLSSCSRLCSLLHGRQFHGLV 511

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K G+ SD+ V  AL  MY + G +    + F+A+  +++V WN +   +      D+ +
Sbjct: 512 VKSGYVSDSFVETALTDMYCKCGEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAV 571

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL-----HAHTIKHSLDGNHVVGTS 293
            ++ +M+  G KP+  TF+ +L ACS    V  G ++       H I+  LD  H +   
Sbjct: 572 GLYRKMISSGEKPDGITFVSVLTACSHSGLVETGLEILSSMQRIHGIEPELD--HYI--C 627

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQA-GEAEMALKCFRK-MRLEGIK 351
           +VD   ++G LEDA    ++   K       I+ S  +  G+  +A +   K MRL+   
Sbjct: 628 IVDCLGRAGRLEDAEKLAEATPYKSSSVLWEILLSSCRVHGDVSLARRVAEKLMRLDPQS 687

Query: 352 SNEFTLAS 359
           S  + L S
Sbjct: 688 SAAYVLLS 695


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 187/601 (31%), Positives = 310/601 (51%), Gaps = 34/601 (5%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA- 62
           A RVFK MP  + VS+N +++GY  +G+ +    LF  M + +      S + ++KG+  
Sbjct: 83  ALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDL----VSWNVMIKGYVR 138

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           N    KA ++   M  R  C+ +  LS      Y++ G  D+A  VF R+ + + V+W A
Sbjct: 139 NRNLGKARELFEIMPERDVCSWNTMLSG-----YAQNGCVDDARSVFDRMPEKNDVSWNA 193

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +++   Q    +EA  +F      ++     +L   V+       ++  +S++       
Sbjct: 194 LLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNV------ 247

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
              D +  N +++ Y ++G++    ++F+    QD  +W A+ S +      ++   +F 
Sbjct: 248 --RDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFD 305

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLD----GNHVVGTSLVDMY 298
           +M  +    N  ++  +L         G+ +       K   D     N     +++  Y
Sbjct: 306 KMPER----NEVSWNAML--------AGYVQGERMEMAKELFDVMPCRNVSTWNTMITGY 353

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            + G + +A   FD +  +D  ++ A+I  Y+Q+G +  AL+ F +M  EG + N  + +
Sbjct: 354 AQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFS 413

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L+ C+ V  L  G+ LH   VK G+    FV  AL+ MY KCGSI++A  +FK  A +
Sbjct: 414 SALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGK 473

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D  SWN MI GY +HG GE AL  F  M  EG  PD+ T V VLSACSH GL+++G+++F
Sbjct: 474 DIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYF 533

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            ++ + YG+ P  +H+ACM+D+LGRAG   +  N +      P+A +W  LLGA   HGN
Sbjct: 534 YTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGN 593

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
            EL E  A+K+  +EP+    YV  S++ A+ GRW D   +R  +  +G+KK P  SWIE
Sbjct: 594 TELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIE 653

Query: 599 V 599
           +
Sbjct: 654 I 654



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 154/368 (41%), Gaps = 67/368 (18%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM--KDMEKKFSKFSLSTVL 58
           ME A  +FKS     +VSWN LL G+ +     +    F SM  +D+       S +T++
Sbjct: 204 MEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDV------VSWNTII 257

Query: 59  KGFAN--------------------------SGYIKAGQVVHAMAI-------------- 78
            G+A                           SGYI+   V  A  +              
Sbjct: 258 TGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNA 317

Query: 79  ---------RLGCALDKF--LSCSLVDMYS-------KCGLADNALKVFYRIKDPDVVAW 120
                    R+  A + F  + C  V  ++       +CG    A  +F ++   D V+W
Sbjct: 318 MLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSW 377

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    Q G   EA ++F  M     + N+   +S +    +      G+ +H  + K
Sbjct: 378 AAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVK 437

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G+E+   VGNAL+ MY + G +   + +F+ +A +D VSWN + + +  +   +  LR 
Sbjct: 438 GGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRF 497

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ-LHAHTIKHSLDGNHVVGTSLVDMYD 299
           F  M  +G KP+  T + +L ACS    V  G+Q  +  T  + +  N      +VD+  
Sbjct: 498 FESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLG 557

Query: 300 KSGCLEDA 307
           ++G LEDA
Sbjct: 558 RAGLLEDA 565



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 98/385 (25%), Positives = 167/385 (43%), Gaps = 26/385 (6%)

Query: 93  VDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQ 152
           +  Y + G  + AL+VF R+     V++  +I+   + G  + A K+F+ M E  +    
Sbjct: 71  ISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWN 130

Query: 153 FVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEA 212
            ++   VR     G  R    I         E D    N ++S Y +NG V     VF+ 
Sbjct: 131 VMIKGYVR-NRNLGKARELFEIMP-------ERDVCSWNTMLSGYAQNGCVDDARSVFDR 182

Query: 213 IAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFG 272
           +  ++ VSWNAL S +      ++       ML K  +     + ++   C     V   
Sbjct: 183 MPEKNDVSWNALLSAYVQNSKMEEAC-----MLFKSRE----NWALVSWNCLLGGFVKKK 233

Query: 273 KQLHAHTIKHSLDGNHVVG-TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQ 331
           K + A     S++   VV   +++  Y +SG +++A   FD    +D+F +TA+++ Y Q
Sbjct: 234 KIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQ 293

Query: 332 AGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFV 391
               E A + F KM     + NE +  + L G      +   + L  +        ++  
Sbjct: 294 NRMVEEARELFDKM----PERNEVSWNAMLAGYVQGERMEMAKELFDVMP----CRNVST 345

Query: 392 STALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGY 451
              ++  YA+CG I +A+ +F     RD  SW  MI GY + G   +AL  F  M  EG 
Sbjct: 346 WNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGG 405

Query: 452 VPDEITFVVVLSACSHMGLIEEGKK 476
             +  +F   LS C+ +  +E GK+
Sbjct: 406 RLNRSSFSSALSTCADVVALELGKQ 430



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/360 (21%), Positives = 165/360 (45%), Gaps = 36/360 (10%)

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           +SD    N  +S YM  GR +   RVF+ +    SVS+N + S +      +   ++F +
Sbjct: 61  DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDE 120

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +    ++ ++ V++K      ++G  ++L     +  +        +++  Y ++GC
Sbjct: 121 MPER----DLVSWNVMIKGYVRNRNLGKARELFEIMPERDV----CSWNTMLSGYAQNGC 172

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++DA   FD +  K+  ++ A++++Y Q  + E A   F+      + S      +CL G
Sbjct: 173 VDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVS-----WNCLLG 227

Query: 364 --CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
                   +   +   S+ V+     D+     ++  YA+ G ID+A  +F  S ++D  
Sbjct: 228 GFVKKKKIVEARQFFDSMNVR-----DVVSWNTIITGYAQSGKIDEARQLFDESPVQDVF 282

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           +W  M+ GY+++ + E+A E F  M +     +E+++  +L+     G ++  +   +  
Sbjct: 283 TWTAMVSGYIQNRMVEEARELFDKMPER----NEVSWNAMLA-----GYVQGERMEMA-- 331

Query: 482 KKIYGITP--TIKHFACMIDILGRAGKFTEIEN-FITETKLTPNALVWENLLGACSWHGN 538
           K+++ + P   +  +  MI    + GK +E +N F    K  P  + W  ++   S  G+
Sbjct: 332 KELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDP--VSWAAMIAGYSQSGH 389



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 9/169 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  +FK M   ++VSWN ++ GY+  G G+  +  F SMK    K    ++  VL  
Sbjct: 460 IEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSA 519

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            +++G +  G Q  + M    G   +      +VD+  + GL ++A  +   +  +PD  
Sbjct: 520 CSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAA 579

Query: 119 AWGAIITCLDQQGCCQ----EAAKIFNLMRESSVKPNQFVLTSLVRATT 163
            WG ++      G  +     A KIF +  E+S     +VL S + A++
Sbjct: 580 IWGTLLGASRVHGNTELAETAADKIFAMEPENS---GMYVLLSNLYASS 625


>gi|356495778|ref|XP_003516750.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
           chloroplastic-like [Glycine max]
          Length = 765

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 175/582 (30%), Positives = 308/582 (52%), Gaps = 1/582 (0%)

Query: 20  NALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIR 79
           N  L   A+ G+ ++V     +M  +    +  S   + K     G +  G++ H    R
Sbjct: 61  NLHLISLAKQGNLREVHEFIRNMDKVGISINPRSYEYLFKMCGTLGALSDGKLFHNRLQR 120

Query: 80  LGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKI 139
           +  + +KF+   ++ MY  C    +A + F +I D D+ +W  II+   ++G   EA ++
Sbjct: 121 MANS-NKFIDNCILKMYCDCKSFTSAERFFDKIVDQDLSSWSTIISAYTEEGRIDEAVRL 179

Query: 140 FNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYME 199
           F  M +  + PN  + ++L+ + T+      G+ IH+ + + GF ++  +   + +MY++
Sbjct: 180 FLRMLDLGITPNSSIFSTLIMSFTDPSMLDLGKQIHSQLIRIGFAANISIETLISNMYVK 239

Query: 200 NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVI 259
            G +         +  +++V+   L   +         L +F +M+ +G + +   F +I
Sbjct: 240 CGWLDGAEVATNKMTRKNAVACTGLMVGYTKAARNRDALLLFGKMISEGVELDGFVFSII 299

Query: 260 LKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL 319
           LKAC++L D+  GKQ+H++ IK  L+    VGT LVD Y K    E A  AF+S+   + 
Sbjct: 300 LKACAALGDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESIHEPND 359

Query: 320 FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSI 379
           F+++A+I  Y Q+G+ + AL+ F+ +R +G+  N F   +    CS V+ L  G  +H+ 
Sbjct: 360 FSWSALIAGYCQSGQFDRALEVFKAIRSKGVLLNSFIYTNIFQACSAVSDLICGAQIHAD 419

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
           A+K G +  +   +A+++MY+KCG +D A   F      DT +W  +I  +  HG   +A
Sbjct: 420 AIKKGLVAYLSGESAMISMYSKCGQVDYAHQAFLTIDKPDTVAWTAIICAHAYHGKAFEA 479

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMID 499
           L  F+ M   G  P+ +TF+ +L+ACSH GL++EGKK   S+   YG+ PTI H+ CMID
Sbjct: 480 LRLFKEMQGSGVRPNAVTFIGLLNACSHSGLVKEGKKILDSMSDEYGVNPTIDHYNCMID 539

Query: 500 ILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESN 559
           +  RAG   E    I      P+ + W++LLG C  H N+E+    A+ +  L+P   + 
Sbjct: 540 VYSRAGLLQEALEVIRSLPFEPDVMSWKSLLGGCWSHRNLEIGMIAADNIFRLDPLDSAT 599

Query: 560 YVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           YV   ++ A  G+W++ +  R +++ + ++KE SCSWI V G
Sbjct: 600 YVIMFNLYALAGKWDEAAQFRKMMAERNLRKEVSCSWIIVKG 641



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 119/432 (27%), Positives = 214/432 (49%), Gaps = 2/432 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R F  + + ++ SW+ +++ Y E G   + + LF  M D+    +    ST++  F +
Sbjct: 145 AERFFDKIVDQDLSSWSTIISAYTEEGRIDEAVRLFLRMLDLGITPNSSIFSTLIMSFTD 204

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G+ +H+  IR+G A +  +   + +MY KCG  D A     ++   + VA   +
Sbjct: 205 PSMLDLGKQIHSQLIRIGFAANISIETLISNMYVKCGWLDGAEVATNKMTRKNAVACTGL 264

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    +    ++A  +F  M    V+ + FV + +++A    GD   G+ IH+   K G 
Sbjct: 265 MVGYTKAARNRDALLLFGKMISEGVELDGFVFSIILKACAALGDLYTGKQIHSYCIKLGL 324

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           ES+  VG  LV  Y++  R     + FE+I   +  SW+AL + +      D+ L +F  
Sbjct: 325 ESEVSVGTPLVDFYVKCARFEAARQAFESIHEPNDFSWSALIAGYCQSGQFDRALEVFKA 384

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           +  KG   N   +  I +ACS++SD+  G Q+HA  IK  L       ++++ MY K G 
Sbjct: 385 IRSKGVLLNSFIYTNIFQACSAVSDLICGAQIHADAIKKGLVAYLSGESAMISMYSKCGQ 444

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++ A  AF ++   D  A+TAII ++A  G+A  AL+ F++M+  G++ N  T    LN 
Sbjct: 445 VDYAHQAFLTIDKPDTVAWTAIICAHAYHGKAFEALRLFKEMQGSGVRPNAVTFIGLLNA 504

Query: 364 CSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DTA 421
           CS    +  G ++L S++ + G    +     ++ +Y++ G + +A  V +      D  
Sbjct: 505 CSHSGLVKEGKKILDSMSDEYGVNPTIDHYNCMIDVYSRAGLLQEALEVIRSLPFEPDVM 564

Query: 422 SWNMMIGGYVKH 433
           SW  ++GG   H
Sbjct: 565 SWKSLLGGCWSH 576



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 114/228 (50%), Gaps = 6/228 (2%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E A++ F+S+ E N  SW+AL+ GY +SG   + + +F +++      + F  + + +  
Sbjct: 345 EAARQAFESIHEPNDFSWSALIAGYCQSGQFDRALEVFKAIRSKGVLLNSFIYTNIFQAC 404

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLS--CSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           +    +  G  +HA AI+ G  L  +LS   +++ MYSKCG  D A + F  I  PD VA
Sbjct: 405 SAVSDLICGAQIHADAIKKG--LVAYLSGESAMISMYSKCGQVDYAHQAFLTIDKPDTVA 462

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI-HAVI 178
           W AII      G   EA ++F  M+ S V+PN      L+ A + +G  + G+ I  ++ 
Sbjct: 463 WTAIICAHAYHGKAFEALRLFKEMQGSGVRPNAVTFIGLLNACSHSGLVKEGKKILDSMS 522

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-DSVSWNALF 225
            +YG        N ++ +Y   G +     V  ++  + D +SW +L 
Sbjct: 523 DEYGVNPTIDHYNCMIDVYSRAGLLQEALEVIRSLPFEPDVMSWKSLL 570


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 186/631 (29%), Positives = 320/631 (50%), Gaps = 41/631 (6%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A+ +F+ MPE N VSW  +++GY       +   +F +M        + +L +VL  
Sbjct: 173 MEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSA 232

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSK-CGLADNALKVFYRIKDPDVVA 119
             + G     + +H +  + G   D  +  ++++ Y+K   + D+A+K F  +   +   
Sbjct: 233 VRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYT 292

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  II  L Q G   +A  ++      SV     +LT L R       +   + IH    
Sbjct: 293 WSTIIAALSQAGRIDDAFAVYQRDPLKSVPSRTSMLTGLARYGRIDDAKILFDQIH---- 348

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
               E + +  NA+++ YM+N  V     +F  +  ++++SW  + + +      +Q L 
Sbjct: 349 ----EPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALV 404

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
               +  KG  P++ +      ACS++  +  GKQ+H+  +K     N  V  +L+ +Y 
Sbjct: 405 SLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYG 464

Query: 300 K-------------------------------SGCLEDAGVAFDSLANKDLFAYTAIITS 328
           K                               +   ++A   F+++ + D+ ++T II++
Sbjct: 465 KYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMPSPDVVSWTTIISA 524

Query: 329 YAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLD 388
            AQA +   A++ FR M  E    N   L   L     +     G+ +H+IA+K G    
Sbjct: 525 CAQADQGNEAVEIFRSMLHERELPNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSG 584

Query: 389 MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
           + V+ ALV+MY KC S D  + VF     RD  +WN +I GY +HGLG +A+  +++M+ 
Sbjct: 585 LVVANALVSMYFKCSSADSLK-VFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVS 643

Query: 449 EGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFT 508
            G +P+E+TFV +L ACSH GL++EG + F S+   YG+TP ++H+ACM+D+LGRAG   
Sbjct: 644 AGVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQ 703

Query: 509 EIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISA 568
             E+FI +  + P++++W  LLGAC  H N+E+  + AEKL  +EP    NYV  S+I +
Sbjct: 704 GAEHFIYDMPIEPDSVIWSALLGACKIHKNVEIGRRAAEKLFSIEPSNAGNYVMLSNIYS 763

Query: 569 TQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +QG W++ + VR L+  +G+ K+P CSW+++
Sbjct: 764 SQGMWDEVAKVRKLMKERGVNKDPGCSWMQI 794



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 109/474 (22%), Positives = 199/474 (41%), Gaps = 87/474 (18%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF SMP  ++++WN+++  Y  +G           M D  +     SL+  + G   
Sbjct: 52  AREVFDSMPFRDIIAWNSMIFAYCNNG-----------MPDAGR-----SLADAISG--- 92

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G ++ G +                   L+  Y++ G   +A +VF  +   + VAW A+
Sbjct: 93  -GNLRTGTI-------------------LLSGYARAGRVRDARRVFDGMGVRNTVAWNAM 132

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +TC  Q G    A K+F+ M    V     +LT                           
Sbjct: 133 VTCYVQNGDITLARKLFDAMPSRDVSSWNTMLTGYCH----------------------- 169

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
                      S  ME  R      +FE +  ++ VSW  + S +   E   +   +F  
Sbjct: 170 -----------SQLMEEAR-----NLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRT 213

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           ML +G  P     + +L A   L   G  + +H    K   + + VVGT++++ Y K   
Sbjct: 214 MLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVN 273

Query: 304 LEDAGVA-FDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
           + D+ V  F+ +A ++ + ++ II + +QAG  + A   +++  L+ + S      S L 
Sbjct: 274 MLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPSR----TSMLT 329

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
           G +    + + ++L        H  ++    A++  Y +   +D+AE +F     R+T S
Sbjct: 330 GLARYGRIDDAKIL----FDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTIS 385

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
           W  MI GY ++G  E+AL + + +  +G +P   +      ACS++  +E GK+
Sbjct: 386 WAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQ 439


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 164/434 (37%), Positives = 253/434 (58%), Gaps = 2/434 (0%)

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228
           R G+ +HA + K  +E    +   L+ +Y +   +    RV + +  ++ VSW A+ S +
Sbjct: 494 REGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGY 553

Query: 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH 288
                  + L +F +ML+ G  PN  TF  +L +C+S S    G+Q+H+  IK S + + 
Sbjct: 554 SQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHI 613

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
            VG+SL+DMY K+G + +A   FD L  +D+ + TAII+ YAQ G  E AL  FR+++ E
Sbjct: 614 FVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQRE 673

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
           G++SN  T AS L   S +A L +GR +HS  ++      + +  +L+ MY+KCGS+  +
Sbjct: 674 GMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYS 733

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV-PDEITFVVVLSACSH 467
             +F     R   SWN M+ GY KHGLG +A+E F++M +E  V PD +TF+ VLS CSH
Sbjct: 734 RRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSH 793

Query: 468 MGLIEEGKKHFSS-IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVW 526
            G+ + G + F   + +  G  P I+H+ C++D+ GRAG+  E   FI +    P A +W
Sbjct: 794 GGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIW 853

Query: 527 ENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQ 586
            +LLGAC  H N+ + E  A +LLE+E +   NYV  S++ A+ GRW+D   VR L+  +
Sbjct: 854 GSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEK 913

Query: 587 GIKKEPSCSWIEVD 600
            + KEP  SWIE+D
Sbjct: 914 AVIKEPGRSWIELD 927



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/396 (26%), Positives = 199/396 (50%), Gaps = 6/396 (1%)

Query: 42  MKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGL 101
           ++ +E +F  +   +VL    +   I+ GQ VHA  I+       +L   L+ +Y+KC  
Sbjct: 470 IQGLEVEFQGYD--SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRC 527

Query: 102 ADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRA 161
             +A +V   + + +VV+W A+I+   Q+G   EA  +F  M  S   PN+F   +++ +
Sbjct: 528 LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTS 587

Query: 162 TTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSW 221
            T +   + G  IH+++ K  FES   VG++L+ MY + G++    RVF+ +  +D VS 
Sbjct: 588 CTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSC 647

Query: 222 NALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK 281
            A+ S +      ++ L +F ++  +G + N  T+  +L A S L+ +  G+Q+H+H ++
Sbjct: 648 TAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLR 707

Query: 282 HSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKC 341
             L    V+  SL+DMY K G L  +   FDS+  + + ++ A++  Y++ G    A++ 
Sbjct: 708 AKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVEL 767

Query: 342 FRKMRLEG-IKSNEFTLASCLNGCSPVATLANGR--LLHSIAVKTGHLLDMFVSTALVAM 398
           F+ M+ E  +K +  T  + L+GCS       G       +  K G   ++     +V +
Sbjct: 768 FKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDL 827

Query: 399 YAKCGSIDDAEAVFKGSALRDTAS-WNMMIGGYVKH 433
           + + G +++A    K      TA+ W  ++G    H
Sbjct: 828 FGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVH 863



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 167/320 (52%), Gaps = 5/320 (1%)

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M ++G +     +  +L  C S + +  G+++HAH IK   +    + T L+ +Y+K  
Sbjct: 467 EMGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCR 526

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
           CL DA    D +  +++ ++TA+I+ Y+Q G A  AL  F +M + G   NEFT A+ L 
Sbjct: 527 CLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLT 586

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+  +    GR +HS+ +KT     +FV ++L+ MYAK G I +A  VF G   RD  S
Sbjct: 587 SCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVS 646

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSI 481
              +I GY + GL E+AL+ FR +  EG   + +T+  VL+A S +  ++ G++ H   +
Sbjct: 647 CTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVL 706

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
           +        +++   +ID+  + G  T     I ++      + W  +L   S HG +  
Sbjct: 707 RAKLPFYVVLQN--SLIDMYSKCGSLT-YSRRIFDSMPERTVISWNAMLVGYSKHG-LGR 762

Query: 542 DEKDAEKLLELEPKMESNYV 561
           +  +  KL++ E K++ + V
Sbjct: 763 EAVELFKLMKEENKVKPDSV 782



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 104/421 (24%), Positives = 184/421 (43%), Gaps = 58/421 (13%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+RV   MPE NVVSW A+++GY++ G   + +HLF  M       ++F+ +TVL    +
Sbjct: 531 ARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTS 590

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           S   + G+ +H++ I+       F+  SL+DMY+K G    A +VF  + + DVV+  AI
Sbjct: 591 SSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAI 650

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   Q G  +EA  +F  ++   ++ N     S++ A +       G  +H+ + +   
Sbjct: 651 ISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKL 710

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
               ++ N+L+ MY + G ++Y  R+F+++  +  +SWNA+   +  +    + + +F  
Sbjct: 711 PFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKL 770

Query: 244 MLLKG-FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           M  +   KP+  TF+ +L  CS                                     G
Sbjct: 771 MKEENKVKPDSVTFLAVLSGCS------------------------------------HG 794

Query: 303 CLEDAG--VAFDSLANKDLFA-----YTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
            +ED G  + ++ +  KD F      Y  ++  + +AG  E A +  +KM  E   +   
Sbjct: 795 GMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAA--- 851

Query: 356 TLASCLNGCS-----PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
              S L  C       +      RLL   +   G+ +       L  +YA  G  DD   
Sbjct: 852 IWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYV------ILSNLYASAGRWDDVRT 905

Query: 411 V 411
           V
Sbjct: 906 V 906


>gi|334186756|ref|NP_193809.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635629|sp|Q9SVH0.2|PP329_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g20770
 gi|332658959|gb|AEE84359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 774

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 183/602 (30%), Positives = 311/602 (51%), Gaps = 46/602 (7%)

Query: 6   RVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVL------K 59
           RVF+S+ + N VS+ A++ G A      + + +F  M +   +     LS +L      +
Sbjct: 195 RVFESLSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLSNILSISAPRE 254

Query: 60  GFANSGYI---KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD 116
           G  +   I   + G+ +H +A+RLG   D  L+ SL+++Y+K    + A  +F  + + +
Sbjct: 255 GCDSLSEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVN 314

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
           VV+W  +I    Q+    ++ +    MR+S  +PN+    S++ A   +GD         
Sbjct: 315 VVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGD--------- 365

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
                                     V  G R+F +I      +WNA+ S + +YE  ++
Sbjct: 366 --------------------------VETGRRIFSSIPQPSVSAWNAMLSGYSNYEHYEE 399

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            +  F QM  +  KP+  T  VIL +C+ L  +  GKQ+H   I+  +  N  + + L+ 
Sbjct: 400 AISNFRQMQFQNLKPDKTTLSVILSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIA 459

Query: 297 MYDKSGCLEDAGVAFDSLANK-DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK-SNE 354
           +Y +   +E +   FD   N+ D+  + ++I+ +        AL  FR+M    +   NE
Sbjct: 460 VYSECEKMEISECIFDDCINELDIACWNSMISGFRHNMLDTKALILFRRMHQTAVLCPNE 519

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            + A+ L+ CS + +L +GR  H + VK+G++ D FV TAL  MY KCG ID A   F  
Sbjct: 520 TSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMYCKCGEIDSARQFFDA 579

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
              ++T  WN MI GY  +G G++A+  +R M+  G  PD ITFV VL+ACSH GL+E G
Sbjct: 580 VLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLTACSHSGLVETG 639

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
            +  SS+++I+GI P + H+ C++D LGRAG+  + E     T    ++++WE LL +C 
Sbjct: 640 LEILSSMQRIHGIEPELDHYICIVDCLGRAGRLEDAEKLAEATPYKSSSVLWEILLSSCR 699

Query: 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSC 594
            HG++ L  + AEKL+ L+P+  + YV  S+  ++  +W+D + ++ L++   + K P  
Sbjct: 700 VHGDVSLARRVAEKLMRLDPQSSAAYVLLSNTYSSLRQWDDSAALQGLMNKNRVHKTPGQ 759

Query: 595 SW 596
           SW
Sbjct: 760 SW 761



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 136/540 (25%), Positives = 257/540 (47%), Gaps = 51/540 (9%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A  VF  MPE +VVSWN +++     G  +K + ++  M       S+F+L++VL   + 
Sbjct: 91  ACEVFDGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLASVLSACSK 150

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCG-LADNALKVFYRIKDPDVVAWGA 122
                 G   H +A++ G   + F+  +L+ MY+KCG + D  ++VF  +  P+ V++ A
Sbjct: 151 VLDGVFGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVRVFESLSQPNEVSYTA 210

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRAT---------TETGDQRCGES 173
           +I  L ++    EA ++F LM E  V+ +   L++++  +         +E      G+ 
Sbjct: 211 VIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLSNILSISAPREGCDSLSEIYGNELGKQ 270

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF-QDYE 232
           IH +  + GF  D  + N+L+ +Y +N  ++    +F  +   + VSWN +   F Q+Y 
Sbjct: 271 IHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWNIMIVGFGQEYR 330

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
           S D+ +    +M   GF+PN  T I +L AC    DV  G+++                 
Sbjct: 331 S-DKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGDVETGRRI----------------- 372

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
                             F S+    + A+ A+++ Y+     E A+  FR+M+ + +K 
Sbjct: 373 ------------------FSSIPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKP 414

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
           ++ TL+  L+ C+ +  L  G+ +H + ++T    +  + + L+A+Y++C  ++ +E +F
Sbjct: 415 DKTTLSVILSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSECEKMEISECIF 474

Query: 413 KGSALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV-PDEITFVVVLSACSHMGL 470
                  D A WN MI G+  + L  KAL  FR M     + P+E +F  VLS+CS +  
Sbjct: 475 DDCINELDIACWNSMISGFRHNMLDTKALILFRRMHQTAVLCPNETSFATVLSSCSRLCS 534

Query: 471 IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
           +  G++    + K   ++ +    A + D+  + G+      F  +  L  N ++W  ++
Sbjct: 535 LLHGRQFHGLVVKSGYVSDSFVETA-LTDMYCKCGEIDSARQFF-DAVLRKNTVIWNEMI 592



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 121/427 (28%), Positives = 208/427 (48%), Gaps = 55/427 (12%)

Query: 155 LTSLVRATTETGDQRC---GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFE 211
           L SL+R      D+RC   G+ IH  I + G +SDT + N L+ +Y+E G   Y  +VF+
Sbjct: 9   LASLLRCYR---DERCKLSGKVIHGFIVRMGMKSDTYLCNRLLDLYIECGDGDYARKVFD 65

Query: 212 AIA-------------------------------HQDSVSWNALFSRFQDYESPDQGLRI 240
            ++                                +D VSWN + S        ++ L +
Sbjct: 66  EMSVRDVYSWNAFLTFRCKVGDLGEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALVV 125

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           + +M+  GF P+  T   +L ACS + D  FG + H   +K  LD N  VG +L+ MY K
Sbjct: 126 YKRMVCDGFLPSRFTLASVLSACSKVLDGVFGMRCHGVAVKTGLDKNIFVGNALLSMYAK 185

Query: 301 SGCLEDAGV-AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK------SN 353
            G + D GV  F+SL+  +  +YTA+I   A+  +   A++ FR M  +G++      SN
Sbjct: 186 CGFIVDYGVRVFESLSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLSN 245

Query: 354 EFTLASCLNGCSPVATLAN---GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
             ++++   GC  ++ +     G+ +H +A++ G   D+ ++ +L+ +YAK   ++ AE 
Sbjct: 246 ILSISAPREGCDSLSEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAEL 305

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           +F      +  SWN+MI G+ +    +K++E    M D G+ P+E+T + VL AC   G 
Sbjct: 306 IFAEMPEVNVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGD 365

Query: 471 IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTE-IENF--ITETKLTPNALVWE 527
           +E G++ FSSI +     P++  +  M+        + E I NF  +    L P+     
Sbjct: 366 VETGRRIFSSIPQ-----PSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLS 420

Query: 528 NLLGACS 534
            +L +C+
Sbjct: 421 VILSSCA 427



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 114/464 (24%), Positives = 205/464 (44%), Gaps = 76/464 (16%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
           L+++L+ + +     +G+V+H   +R+G   D +L   L+D+Y +CG  D A KVF  + 
Sbjct: 9   LASLLRCYRDERCKLSGKVIHGFIVRMGMKSDTYLCNRLLDLYIECGDGDYARKVFDEMS 68

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK------------------------ 149
             DV +W A +T   + G   EA ++F+ M E  V                         
Sbjct: 69  VRDVYSWNAFLTFRCKVGDLGEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALVVYKR 128

Query: 150 -------PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENG- 201
                  P++F L S++ A ++  D   G   H V  K G + +  VGNAL+SMY + G 
Sbjct: 129 MVCDGFLPSRFTLASVLSACSKVLDGVFGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGF 188

Query: 202 RVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFK------PNMCT 255
            V YG RVFE+++  + VS+ A+           + +++F  M  KG +       N+ +
Sbjct: 189 IVDYGVRVFESLSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLSNILS 248

Query: 256 FIVILKACSSLSDV---GFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
                + C SLS++     GKQ+H   ++    G+  +  SL+++Y K+  +  A + F 
Sbjct: 249 ISAPREGCDSLSEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFA 308

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
            +   ++ ++  +I  + Q   ++ +++   +MR  G + NE T  S L  C        
Sbjct: 309 EMPEVNVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGAC-------- 360

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
                                       + G ++    +F        ++WN M+ GY  
Sbjct: 361 ---------------------------FRSGDVETGRRIFSSIPQPSVSAWNAMLSGYSN 393

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
           +   E+A+  FR M  +   PD+ T  V+LS+C+ +  +E GK+
Sbjct: 394 YEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCARLRFLEGGKQ 437



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/444 (22%), Positives = 190/444 (42%), Gaps = 51/444 (11%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A+ +F  MPE+NVVSWN ++ G+ +     K +     M+D   + ++ +  +VL  
Sbjct: 300 MNGAELIFAEMPEVNVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGA 359

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              SG ++ G+                                   ++F  I  P V AW
Sbjct: 360 CFRSGDVETGR-----------------------------------RIFSSIPQPSVSAW 384

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+++        +EA   F  M+  ++KP++  L+ ++ +         G+ IH V+ +
Sbjct: 385 NAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCARLRFLEGGKQIHGVVIR 444

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVF-EAIAHQDSVSWNALFSRFQDYESPDQGLR 239
                ++ + + L+++Y E  ++     +F + I   D   WN++ S F+      + L 
Sbjct: 445 TEISKNSHIVSGLIAVYSECEKMEISECIFDDCINELDIACWNSMISGFRHNMLDTKALI 504

Query: 240 IFYQMLLKG-FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           +F +M       PN  +F  +L +CS L  +  G+Q H   +K     +  V T+L DMY
Sbjct: 505 LFRRMHQTAVLCPNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMY 564

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G ++ A   FD++  K+   +  +I  Y   G  + A+  +RKM   G K +  T  
Sbjct: 565 CKCGEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFV 624

Query: 359 SCLNGCSPVATLANG-------RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
           S L  CS    +  G       + +H I  +  H +       +V    + G ++DAE +
Sbjct: 625 SVLTACSHSGLVETGLEILSSMQRIHGIEPELDHYI------CIVDCLGRAGRLEDAEKL 678

Query: 412 FKGSALRDTAS-WNMMIGGYVKHG 434
            + +  + ++  W +++     HG
Sbjct: 679 AEATPYKSSSVLWEILLSSCRVHG 702



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 179/368 (48%), Gaps = 13/368 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E  +R+F S+P+ +V +WNA+L+GY+     ++ +  F  M+    K  K +LS +L  
Sbjct: 366 VETGRRIFSSIPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSS 425

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYR-IKDPDVVA 119
            A   +++ G+ +H + IR   + +  +   L+ +YS+C   + +  +F   I + D+  
Sbjct: 426 CARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSECEKMEISECIFDDCINELDIAC 485

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVK-PNQFVLTSLVRATTETGDQRCGESIHAVI 178
           W ++I+         +A  +F  M +++V  PN+    +++ + +       G   H ++
Sbjct: 486 WNSMISGFRHNMLDTKALILFRRMHQTAVLCPNETSFATVLSSCSRLCSLLHGRQFHGLV 545

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K G+ SD+ V  AL  MY + G +    + F+A+  +++V WN +   +      D+ +
Sbjct: 546 VKSGYVSDSFVETALTDMYCKCGEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAV 605

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL-----HAHTIKHSLDGNHVVGTS 293
            ++ +M+  G KP+  TF+ +L ACS    V  G ++       H I+  LD  H +   
Sbjct: 606 GLYRKMISSGEKPDGITFVSVLTACSHSGLVETGLEILSSMQRIHGIEPELD--HYI--C 661

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQA-GEAEMALKCFRK-MRLEGIK 351
           +VD   ++G LEDA    ++   K       I+ S  +  G+  +A +   K MRL+   
Sbjct: 662 IVDCLGRAGRLEDAEKLAEATPYKSSSVLWEILLSSCRVHGDVSLARRVAEKLMRLDPQS 721

Query: 352 SNEFTLAS 359
           S  + L S
Sbjct: 722 SAAYVLLS 729


>gi|357117671|ref|XP_003560587.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Brachypodium distachyon]
          Length = 602

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 179/555 (32%), Positives = 309/555 (55%), Gaps = 9/555 (1%)

Query: 50  SKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLA-DNALKV 108
           S  SL+ VL    +    + G  +HA A R G   D++++ +L+  Y +       AL+ 
Sbjct: 37  SPVSLAAVLLRHPSP---RLGYCLHARAARAGLLADRYVANALLAFYVRLPRHLPYALRA 93

Query: 109 FYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESS--VKPNQFVLTSLVRATTETG 166
           F  +   DVVA  +I+    + G  + A +    M   +  V PN   L++ V+A     
Sbjct: 94  FDDLPHRDVVAHSSILAAFLRAGLPRRALQSLRSMLAGADGVFPNAHALSAAVKACAVLR 153

Query: 167 DQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS 226
           D+  G  +H VI   G+  D +V +ALV MY          + FE +   D + + +L S
Sbjct: 154 DRNVGACVHGVILVRGYADDDIVLSALVDMYGHTASPGDARKAFEEMCTPDGICYTSLIS 213

Query: 227 RFQDYESPDQGLRIFYQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLD 285
            F   +  ++ +R F  M+ + G +P+ CTF  ++ A  +L     G + HA  +   L 
Sbjct: 214 AFVRNDWFEEAVRWFRTMVTRNGVEPDGCTFGSMMTALGNLRRARQGSEAHAQVVTRGLC 273

Query: 286 GNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM 345
           G+ +V +S +DMY K G + +A   FD +  ++  +++A++  Y Q  E E  L  FR+M
Sbjct: 274 GSVIVESSTLDMYAKCGMMLEARRVFDEMQVRNAVSWSALLGGYCQNAEYEKVLVLFRQM 333

Query: 346 RLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSI 405
             E    + ++L + L  C+ ++++  G+ +H   ++ G   D+ V +ALV +YAKCG++
Sbjct: 334 DKE--YDDSYSLGTVLRACAGLSSVKPGKEIHCRFLRNGGWRDVVVESALVDLYAKCGAV 391

Query: 406 DDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC 465
           D A  VF+ S++R+T +WN MIGG+ ++G  E+A+  F  M+ EG  PD I+F+ VL AC
Sbjct: 392 DYACRVFEASSVRNTITWNAMIGGFAQNGHAERAINLFNQMVREGARPDYISFIGVLFAC 451

Query: 466 SHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV 525
           SH G++E+G+ +F+S+ K YGI P I+H+ C++D+L R     E E+ I ++  + ++ +
Sbjct: 452 SHNGMVEQGRNYFNSMSKDYGIAPGIEHYNCIVDLLSRVELLEEAEDLINKSPFSNDSSL 511

Query: 526 WENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSS 585
           W  +LGA +   N ++ E+ A+K++ELEP+   +Y+   ++  T GRW D S +R L+ S
Sbjct: 512 WAAILGASATQSNPDVAERVAKKMMELEPQYHLSYILLENVYRTVGRWEDASEIRRLMKS 571

Query: 586 QGIKKEPSCSWIEVD 600
           + +KK+P  SWI+V+
Sbjct: 572 RKVKKDPGMSWIDVN 586



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/434 (24%), Positives = 205/434 (47%), Gaps = 7/434 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSK-FSLSTVL 58
           +  A R F  +P  +VV+ +++L  +  +G  ++ +    SM    +  F    +LS  +
Sbjct: 87  LPYALRAFDDLPHRDVVAHSSILAAFLRAGLPRRALQSLRSMLAGADGVFPNAHALSAAV 146

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
           K  A       G  VH + +  G A D  +  +LVDMY       +A K F  +  PD +
Sbjct: 147 KACAVLRDRNVGACVHGVILVRGYADDDIVLSALVDMYGHTASPGDARKAFEEMCTPDGI 206

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLM-RESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
            + ++I+   +    +EA + F  M   + V+P+     S++ A       R G   HA 
Sbjct: 207 CYTSLISAFVRNDWFEEAVRWFRTMVTRNGVEPDGCTFGSMMTALGNLRRARQGSEAHAQ 266

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
           +   G     +V ++ + MY + G +    RVF+ +  +++VSW+AL   +      ++ 
Sbjct: 267 VVTRGLCGSVIVESSTLDMYAKCGMMLEARRVFDEMQVRNAVSWSALLGGYCQNAEYEKV 326

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           L +F QM  K +  +  +   +L+AC+ LS V  GK++H   +++    + VV ++LVD+
Sbjct: 327 LVLFRQM-DKEYDDSY-SLGTVLRACAGLSSVKPGKEIHCRFLRNGGWRDVVVESALVDL 384

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K G ++ A   F++ + ++   + A+I  +AQ G AE A+  F +M  EG + +  + 
Sbjct: 385 YAKCGAVDYACRVFEASSVRNTITWNAMIGGFAQNGHAERAINLFNQMVREGARPDYISF 444

Query: 358 ASCLNGCSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
              L  CS    +  GR   +S++   G    +     +V + ++   +++AE +   S 
Sbjct: 445 IGVLFACSHNGMVEQGRNYFNSMSKDYGIAPGIEHYNCIVDLLSRVELLEEAEDLINKSP 504

Query: 417 L-RDTASWNMMIGG 429
              D++ W  ++G 
Sbjct: 505 FSNDSSLWAAILGA 518



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 169/354 (47%), Gaps = 23/354 (6%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM---KDMEKKFSKFSLSTVLKG 60
           A++ F+ M   + + + +L++ +  +   ++ +  F +M     +E     F   +++  
Sbjct: 193 ARKAFEEMCTPDGICYTSLISAFVRNDWFEEAVRWFRTMVTRNGVEPDGCTFG--SMMTA 250

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             N    + G   HA  +  G      +  S +DMY+KCG+   A +VF  ++  + V+W
Sbjct: 251 LGNLRRARQGSEAHAQVVTRGLCGSVIVESSTLDMYAKCGMMLEARRVFDEMQVRNAVSW 310

Query: 121 GAIITCLDQQGCCQEA--AKIFNLMRESSVK-PNQFVLTSLVRATTETGDQRCGESIHAV 177
            A++      G CQ A   K+  L R+   +  + + L +++RA       + G+ IH  
Sbjct: 311 SALLG-----GYCQNAEYEKVLVLFRQMDKEYDDSYSLGTVLRACAGLSSVKPGKEIHCR 365

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
             + G   D +V +ALV +Y + G V Y  RVFEA + +++++WNA+   F      ++ 
Sbjct: 366 FLRNGGWRDVVVESALVDLYAKCGAVDYACRVFEASSVRNTITWNAMIGGFAQNGHAERA 425

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ-LHAHTIKHSLDGNHVVGTSLVD 296
           + +F QM+ +G +P+  +FI +L ACS    V  G+   ++ +  + +         +VD
Sbjct: 426 INLFNQMVREGARPDYISFIGVLFACSHNGMVEQGRNYFNSMSKDYGIAPGIEHYNCIVD 485

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFA-----YTAIITSYAQAGEAEMALKCFRKM 345
           +  +   LE+A    + L NK  F+     + AI+ + A     ++A +  +KM
Sbjct: 486 LLSRVELLEEA----EDLINKSPFSNDSSLWAAILGASATQSNPDVAERVAKKM 535



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 114/248 (45%), Gaps = 12/248 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFS-KFSLSTVLKGFA 62
           A+RVF  M   N VSW+ALL GY ++ + +KV+ LF   + M+K++   +SL TVL+  A
Sbjct: 295 ARRVFDEMQVRNAVSWSALLGGYCQNAEYEKVLVLF---RQMDKEYDDSYSLGTVLRACA 351

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
               +K G+ +H   +R G   D  +  +LVD+Y+KCG  D A +VF      + + W A
Sbjct: 352 GLSSVKPGKEIHCRFLRNGGWRDVVVESALVDLYAKCGAVDYACRVFEASSVRNTITWNA 411

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK-Y 181
           +I    Q G  + A  +FN M     +P+      ++ A +  G    G +    + K Y
Sbjct: 412 MIGGFAQNGHAERAINLFNQMVREGARPDYISFIGVLFACSHNGMVEQGRNYFNSMSKDY 471

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH----QDSVSWNALFSRFQDYESPDQG 237
           G        N +V +     RV       + I       DS  W A+        +PD  
Sbjct: 472 GIAPGIEHYNCIVDLL---SRVELLEEAEDLINKSPFSNDSSLWAAILGASATQSNPDVA 528

Query: 238 LRIFYQML 245
            R+  +M+
Sbjct: 529 ERVAKKMM 536



 Score = 45.1 bits (105), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 70/149 (46%), Gaps = 6/149 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A RVF++    N ++WNA++ G+A++G  ++ ++LF  M     +    S   VL  
Sbjct: 391 VDYACRVFEASSVRNTITWNAMIGGFAQNGHAERAINLFNQMVREGARPDYISFIGVLFA 450

Query: 61  FANSGYIKAGQ-VVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP---D 116
            +++G ++ G+   ++M+   G A        +VD+ S+  L + A  +    K P   D
Sbjct: 451 CSHNGMVEQGRNYFNSMSKDYGIAPGIEHYNCIVDLLSRVELLEEAEDLIN--KSPFSND 508

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFNLMRE 145
              W AI+     Q     A ++   M E
Sbjct: 509 SSLWAAILGASATQSNPDVAERVAKKMME 537


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 175/545 (32%), Positives = 294/545 (53%), Gaps = 2/545 (0%)

Query: 57  VLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD 116
           VL    +   ++ G+ +H+       +LD F++ +LV+ Y+KCG   +A KVF  +    
Sbjct: 16  VLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRS 75

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
           V  W ++I+         EA  IF  M+    + ++    S++ A     + + G+ +  
Sbjct: 76  VGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNPENLQHGKHVRE 135

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
            I +  FE D  VG AL++MY         ++VF  +  ++ ++W+A+ + F D+    +
Sbjct: 136 SISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSAIITAFADHGHCGE 195

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            LR F  M  +G  PN  TFI +L   ++ S +    ++H    +H LD    +  +LV+
Sbjct: 196 ALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMSNALVN 255

Query: 297 MYDK--SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           +Y +  +G L+ A V    +  + + A+  +I  Y   G +  AL+ +++++LE I  ++
Sbjct: 256 VYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDK 315

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            T  S LN C+   +LA G+++HS AV+ G   D+ V  AL  MY+KCGS+++A  +F  
Sbjct: 316 VTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDS 375

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
             +R   SWN M+  Y +HG  E+ L+  R M  EG   + ITFV VLS+CSH GLI EG
Sbjct: 376 MPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEG 435

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
            ++F S+    GI    +H+ C++D+LGRAGK  E E +I++    P  + W +LLGAC 
Sbjct: 436 CQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEPEIVTWASLLGACR 495

Query: 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSC 594
            H +++  +  A KLLEL+P   S  V  S+I + +G W + + +R  ++S+ +KK P  
Sbjct: 496 VHKDLDRGKLAARKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGI 555

Query: 595 SWIEV 599
           S I+V
Sbjct: 556 SSIQV 560



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 134/471 (28%), Positives = 238/471 (50%), Gaps = 20/471 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF  MP  +V +WN++++ Y+ S    +   +F  M+   ++  + +  ++L    N
Sbjct: 64  ARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVN 123

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ G+ V          LD F+  +L+ MY++C   +NA +VF R+K  +++ W AI
Sbjct: 124 PENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSAI 183

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRA-TTETGDQRCGESIHAVICKYG 182
           IT     G C EA + F +M++  + PN+    SL+   TT +G +     IH +I ++G
Sbjct: 184 ITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSR-IHLLITEHG 242

Query: 183 FESDTLVGNALVSMY--MENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            +  T + NALV++Y   E G +     + + +  Q   +WN L + +  +    + L  
Sbjct: 243 LDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREALET 302

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           + ++ L+    +  TFI +L AC+S + +  GK +H++ ++  LD + +V  +L +MY K
Sbjct: 303 YQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSK 362

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +E+A   FDS+  +   ++  ++ +YAQ GE+E  LK  RKM  EG+K N  T  S 
Sbjct: 363 CGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSV 422

Query: 361 LNGCSPVATLANG-RLLHS------IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA-VF 412
           L+ CS    +A G +  HS      I VKT H         LV +  + G + +AE  + 
Sbjct: 423 LSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHY------GCLVDLLGRAGKLQEAEKYIS 476

Query: 413 KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           K  +  +  +W  ++G    H   ++   A R +L+    P   +  VVLS
Sbjct: 477 KMPSEPEIVTWASLLGACRVHKDLDRGKLAARKLLE--LDPGNSSASVVLS 525



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 116/416 (27%), Positives = 206/416 (49%), Gaps = 11/416 (2%)

Query: 148 VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGS 207
           VK N     +++ +  +    R G+ IH+ + +     D  V  ALV+ Y + G ++   
Sbjct: 6   VKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDAR 65

Query: 208 RVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLS 267
           +VF+ +  +   +WN++ S +   E   +   IF +M  +G + +  TF+ IL AC +  
Sbjct: 66  KVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNPE 125

Query: 268 DVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIIT 327
           ++  GK +     + S + +  VGT+L+ MY +    E+A   F  +  K+L  ++AIIT
Sbjct: 126 NLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSAIIT 185

Query: 328 SYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL 387
           ++A  G    AL+ FR M+ EGI  N  T  S LNG +  + L     +H +  + G   
Sbjct: 186 AFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDD 245

Query: 388 DMFVSTALVAMYAKC--GSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRM 445
              +S ALV +Y +C  G +D AE + +    +   +WN++I GY  HG   +ALE ++ 
Sbjct: 246 TTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREALETYQR 305

Query: 446 MLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAG 505
           +  E    D++TF+ VL+AC+    + EGK   S+  +  G+   +     + ++  + G
Sbjct: 306 LQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVEC-GLDSDVIVKNALTNMYSKCG 364

Query: 506 KFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYV 561
              E    I ++    +A+ W  +L A + HG       ++E++L+L  KME   V
Sbjct: 365 SM-ENARRIFDSMPIRSAVSWNGMLQAYAQHG-------ESEEVLKLIRKMEQEGV 412



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 151/299 (50%), Gaps = 10/299 (3%)

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHA--HTIKHSLDGNHVVGTSLVDMYDKS 301
           MLL+G K N+ TF+ +L +      +  GK +H+     +HSLD    V T+LV+ Y K 
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDV--FVNTALVNTYTKC 58

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G L DA   FD +  + +  + ++I++Y+ +  +  A   F++M+ EG + +  T  S L
Sbjct: 59  GSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSIL 118

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           + C     L +G+ +     +T   LD+FV TAL+ MYA+C S ++A  VF     ++  
Sbjct: 119 DACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLI 178

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA-CSHMGLIEEGKKHFSS 480
           +W+ +I  +  HG   +AL  FRMM  EG +P+ +TF+ +L+   +  GL E  + H   
Sbjct: 179 TWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHL-- 236

Query: 481 IKKIYGITPTIKHFACMIDILGR--AGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           +   +G+  T      ++++ GR   G+    E  + E         W  L+   + HG
Sbjct: 237 LITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMD-EQQITAWNVLINGYTLHG 294



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 155/312 (49%), Gaps = 9/312 (2%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E A +VF  M + N+++W+A++  +A+ G   + +  F  M+      ++ +  ++L GF
Sbjct: 163 ENAAQVFGRMKQKNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGF 222

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKC--GLADNALKVFYRIKDPDVVA 119
                ++    +H +    G      +S +LV++Y +C  G  D A  +   + +  + A
Sbjct: 223 TTPSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITA 282

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  +I      G  +EA + +  ++  ++  ++    S++ A T +     G+ IH+   
Sbjct: 283 WNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAV 342

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           + G +SD +V NAL +MY + G +    R+F+++  + +VSWN +   +  +   ++ L+
Sbjct: 343 ECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLK 402

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS----LV 295
           +  +M  +G K N  TF+ +L +CS    +  G Q + H++ H  D    V T     LV
Sbjct: 403 LIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQ-YFHSLGH--DRGIEVKTEHYGCLV 459

Query: 296 DMYDKSGCLEDA 307
           D+  ++G L++A
Sbjct: 460 DLLGRAGKLQEA 471



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 111/239 (46%), Gaps = 2/239 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +++A+ + + M E  + +WN L+NGY   G  ++ +  +  ++       K +  +VL  
Sbjct: 265 LDVAEVILQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNA 324

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +S  +  G+++H+ A+  G   D  +  +L +MYSKCG  +NA ++F  +     V+W
Sbjct: 325 CTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSW 384

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG-ESIHAVIC 179
             ++    Q G  +E  K+   M +  VK N     S++ + +  G    G +  H++  
Sbjct: 385 NGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGH 444

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-DSVSWNALFSRFQDYESPDQG 237
             G E  T     LV +    G++    +    +  + + V+W +L    + ++  D+G
Sbjct: 445 DRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEPEIVTWASLLGACRVHKDLDRG 503


>gi|242092246|ref|XP_002436613.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
 gi|241914836|gb|EER87980.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
          Length = 683

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 179/600 (29%), Positives = 305/600 (50%), Gaps = 10/600 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFS------KFSLSTV 57
           A+ VF   P  +  S+  +L    ++    + + L    +DM ++         F LS  
Sbjct: 83  ARMVFDGTPRPDAYSYGVMLWCLVQAERHAEAVALH---QDMRRRRPCPEAQDDFVLSLA 139

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
           LK    S     G  +H  A+++G A D F+  SLVDMY+K G  + A KVF RI   +V
Sbjct: 140 LKACIRSADYGYGTRLHCDAVKVGGA-DGFVMNSLVDMYAKAGDLECARKVFERIPGRNV 198

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           V+W ++++   Q G   +   +FN MR+ +V P+++ + +++ A +       G  +H  
Sbjct: 199 VSWTSMLSGCVQNGFAADGLLLFNKMRQDNVPPSEYTIATVITACSALIGLHQGRWMHGS 258

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
           + K G  S++ +  AL+ MY++ G +     VF+ +++ D V W  +   +    +P   
Sbjct: 259 VIKQGLMSNSFISAALLDMYVKCGELEDAQCVFDELSYIDLVLWTTMIVGYTQNGNPLDA 318

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           LR+F         PN  T   +L A + L D+  G+ +H   +K  L    VV  +LVDM
Sbjct: 319 LRLFLDKKFANIVPNSVTIATVLSASAQLRDLSLGRSIHGIAVKLGLVEYTVVVNALVDM 378

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K   + +A   F S++NKD+ A+ ++++ YA+      AL  F++M L+G   +  ++
Sbjct: 379 YAKCQAVSEANRIFGSISNKDVVAWNSMLSGYAENNMCNDALMLFKQMSLKGPSPDAISV 438

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
              L+    +  L  G+  H  AVK   L +++VSTAL+ +Y KCG +  A  VF     
Sbjct: 439 VHALSASVCLGDLLIGKSFHGYAVKHAFLSNIYVSTALLNLYNKCGDLPSARRVFDEMND 498

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           R++ +W  MIGGY   G    +++ F  ML +G  P+++ F  +LS CSH G++   K++
Sbjct: 499 RNSVTWCAMIGGYGMQGDSAGSIDLFGEMLKDGVHPNDVAFTSILSTCSHTGMVTAAKRY 558

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F S+ + + ITP++KH+ACM+D+L RAG   E   FI    +  +  VW   L  C  H 
Sbjct: 559 FDSMAQHFNITPSMKHYACMVDVLARAGNLEEALEFIDNMPMQADTSVWGAFLHGCELHS 618

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
            ++  E+  ++++ L P+    YV  S++  + G W     +R  +  +G+ K P  S I
Sbjct: 619 RLQFGEEAIKRMMVLHPERPDLYVLISNLYTSNGMWEKSQAIRRWMQEKGLVKLPGYSSI 678



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 136/480 (28%), Positives = 249/480 (51%), Gaps = 9/480 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A++VF+ +P  NVVSW ++L+G  ++G     + LF  M+      S+++++TV+  
Sbjct: 183 LECARKVFERIPGRNVVSWTSMLSGCVQNGFAADGLLLFNKMRQDNVPPSEYTIATVITA 242

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    +  G+ +H   I+ G   + F+S +L+DMY KCG  ++A  VF  +   D+V W
Sbjct: 243 CSALIGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELEDAQCVFDELSYIDLVLW 302

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I    Q G   +A ++F   + +++ PN   + +++ A+ +  D   G SIH +  K
Sbjct: 303 TTMIVGYTQNGNPLDALRLFLDKKFANIVPNSVTIATVLSASAQLRDLSLGRSIHGIAVK 362

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G    T+V NALV MY +   VS  +R+F +I+++D V+WN++ S + +    +  L +
Sbjct: 363 LGLVEYTVVVNALVDMYAKCQAVSEANRIFGSISNKDVVAWNSMLSGYAENNMCNDALML 422

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QM LKG  P+  + +  L A   L D+  GK  H + +KH+   N  V T+L+++Y+K
Sbjct: 423 FKQMSLKGPSPDAISVVHALSASVCLGDLLIGKSFHGYAVKHAFLSNIYVSTALLNLYNK 482

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L  A   FD + +++   + A+I  Y   G++  ++  F +M  +G+  N+    S 
Sbjct: 483 CGDLPSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIDLFGEMLKDGVHPNDVAFTSI 542

Query: 361 LNGCSPVATL-ANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR- 418
           L+ CS    + A  R   S+A        M     +V + A+ G++++A        ++ 
Sbjct: 543 LSTCSHTGMVTAAKRYFDSMAQHFNITPSMKHYACMVDVLARAGNLEEALEFIDNMPMQA 602

Query: 419 DTASWNMMIGGYVKHG---LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           DT+ W   + G   H     GE+A++  RMM+     PD   +V++ +  +  G+ E+ +
Sbjct: 603 DTSVWGAFLHGCELHSRLQFGEEAIK--RMMVLHPERPD--LYVLISNLYTSNGMWEKSQ 658



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 151/509 (29%), Positives = 237/509 (46%), Gaps = 22/509 (4%)

Query: 67  IKAGQVVHAMAIRLGC--ALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
           + A  + H   + LG   A  K LSC     Y+  G   +A  VF     PD  ++G ++
Sbjct: 48  LHARLLTHTQGLLLGSLRARTKLLSC-----YAALGDLASARMVFDGTPRPDAYSYGVML 102

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKP---NQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            CL Q     EA  +   MR     P   + FVL+  ++A   + D   G  +H    K 
Sbjct: 103 WCLVQAERHAEAVALHQDMRRRRPCPEAQDDFVLSLALKACIRSADYGYGTRLHCDAVKV 162

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G  +D  V N+LV MY + G +    +VFE I  ++ VSW ++ S          GL +F
Sbjct: 163 G-GADGFVMNSLVDMYAKAGDLECARKVFERIPGRNVVSWTSMLSGCVQNGFAADGLLLF 221

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M      P+  T   ++ ACS+L  +  G+ +H   IK  L  N  +  +L+DMY K 
Sbjct: 222 NKMRQDNVPPSEYTIATVITACSALIGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKC 281

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G LEDA   FD L+  DL  +T +I  Y Q G    AL+ F   +   I  N  T+A+ L
Sbjct: 282 GELEDAQCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKKFANIVPNSVTIATVL 341

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           +  + +  L+ GR +H IAVK G +    V  ALV MYAKC ++ +A  +F   + +D  
Sbjct: 342 SASAQLRDLSLGRSIHGIAVKLGLVEYTVVVNALVDMYAKCQAVSEANRIFGSISNKDVV 401

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSS 480
           +WN M+ GY ++ +   AL  F+ M  +G  PD I+ V  LSA   +G +  GK  H  +
Sbjct: 402 AWNSMLSGYAENNMCNDALMLFKQMSLKGPSPDAISVVHALSASVCLGDLLIGKSFHGYA 461

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +K  +     I     ++++  + G          E     N++ W  ++G     G   
Sbjct: 462 VK--HAFLSNIYVSTALLNLYNKCGDLPSARRVFDEMN-DRNSVTWCAMIGGYGMQG--- 515

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISAT 569
               D+   ++L  +M  + V P+D++ T
Sbjct: 516 ----DSAGSIDLFGEMLKDGVHPNDVAFT 540



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 131/290 (45%), Gaps = 14/290 (4%)

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHS---LDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
            + +L +C +L  +   + LHA  + H+   L G+    T L+  Y   G L  A + FD
Sbjct: 32  LLRLLPSCGTLPSL---RVLHARLLTHTQGLLLGSLRARTKLLSCYAALGDLASARMVFD 88

Query: 313 SLANKDLFAYTAIITSYAQA---GEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369
                D ++Y  ++    QA    EA    +  R+ R      ++F L+  L  C   A 
Sbjct: 89  GTPRPDAYSYGVMLWCLVQAERHAEAVALHQDMRRRRPCPEAQDDFVLSLALKACIRSAD 148

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
              G  LH  AVK G   D FV  +LV MYAK G ++ A  VF+    R+  SW  M+ G
Sbjct: 149 YGYGTRLHCDAVKVGG-ADGFVMNSLVDMYAKAGDLECARKVFERIPGRNVVSWTSMLSG 207

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK-KHFSSIKKIYGIT 488
            V++G     L  F  M  +   P E T   V++ACS +  + +G+  H S IK+  G+ 
Sbjct: 208 CVQNGFAADGLLLFNKMRQDNVPPSEYTIATVITACSALIGLHQGRWMHGSVIKQ--GLM 265

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
                 A ++D+  + G+  + +    E     + ++W  ++   + +GN
Sbjct: 266 SNSFISAALLDMYVKCGELEDAQCVFDELSYI-DLVLWTTMIVGYTQNGN 314


>gi|356495733|ref|XP_003516728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Glycine max]
          Length = 770

 Score =  318 bits (815), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 178/599 (29%), Positives = 313/599 (52%), Gaps = 45/599 (7%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVL----K 59
           A RVF+ +PE N V++  ++ G A++   ++   LF  M     +    SLS++L    K
Sbjct: 192 ALRVFRDIPEPNEVTFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDSVSLSSMLGVCAK 251

Query: 60  GFANSGYIKA------GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
           G  + G          G+ +H ++++LG   D  L  SL+DMY+K G  D+A KVF  + 
Sbjct: 252 GERDVGPCHGISTNAQGKQMHTLSVKLGFERDLHLCNSLLDMYAKIGDMDSAEKVFVNLN 311

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES 173
              VV+W  +I     +   ++AA+    M+    +P+     +++ A  ++GD      
Sbjct: 312 RHSVVSWNIMIAGYGNRCNSEKAAEYLQRMQSDGYEPDDVTYINMLTACVKSGD------ 365

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
                                        V  G ++F+ +      SWNA+ S +     
Sbjct: 366 -----------------------------VRTGRQIFDCMPCPSLTSWNAILSGYNQNAD 396

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
             + + +F +M  +   P+  T  VIL +C+ L  +  GK++HA + K     +  V +S
Sbjct: 397 HREAVELFRKMQFQCQHPDRTTLAVILSSCAELGFLEAGKEVHAASQKFGFYDDVYVASS 456

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           L+++Y K G +E +   F  L   D+  + +++  ++     + AL  F+KMR  G   +
Sbjct: 457 LINVYSKCGKMELSKHVFSKLPELDVVCWNSMLAGFSINSLGQDALSFFKKMRQLGFFPS 516

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
           EF+ A+ ++ C+ +++L  G+  H+  VK G L D+FV ++L+ MY KCG ++ A   F 
Sbjct: 517 EFSFATVVSSCAKLSSLFQGQQFHAQIVKDGFLDDIFVGSSLIEMYCKCGDVNGARCFFD 576

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
               R+T +WN MI GY ++G G  AL  +  M+  G  PD+IT+V VL+ACSH  L++E
Sbjct: 577 VMPGRNTVTWNEMIHGYAQNGDGHNALCLYNDMISSGEKPDDITYVAVLTACSHSALVDE 636

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           G + F+++ + YG+ P + H+ C+ID L RAG+F E+E  +       +A+VWE +L +C
Sbjct: 637 GLEIFNAMLQKYGVVPKVAHYTCIIDCLSRAGRFNEVEVILDAMPCKDDAVVWEVVLSSC 696

Query: 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEP 592
             H N+ L ++ AE+L  L+P+  ++YV  +++ ++ G+W+D   VR L+S   ++K+P
Sbjct: 697 RIHANLSLAKRAAEELYRLDPQNSASYVLLANMYSSLGKWDDAHVVRDLMSHNQVRKDP 755



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 170/371 (45%), Gaps = 41/371 (11%)

Query: 149 KPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSR 208
           K     L +LV+          G+ +HA + +    SDT + N  + +Y +   ++    
Sbjct: 3   KSKSLNLANLVQHCITNKAHLSGKVVHARLFRLALFSDTFLSNHFIELYSKCDHIASACH 62

Query: 209 VFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM------------------------ 244
           VF+ I H++  SWNA+ + +    +     R+F QM                        
Sbjct: 63  VFDNIPHKNIFSWNAILAAYCKARNLQYACRLFLQMPQRNTVSLNTLISTMVRCGYERQA 122

Query: 245 -------LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
                  +L G  P+  TF  +  AC SL D   G++ H   IK  L+ N  V  +L+ M
Sbjct: 123 LDTYDSVMLDGVIPSHITFATVFSACGSLLDADCGRRTHGVVIKVGLESNIYVVNALLCM 182

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K G   DA   F  +   +   +T ++   AQ  + + A + FR M  +GI+ +  +L
Sbjct: 183 YAKCGLNADALRVFRDIPEPNEVTFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDSVSL 242

Query: 358 AS----CLNG------CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
           +S    C  G      C  ++T A G+ +H+++VK G   D+ +  +L+ MYAK G +D 
Sbjct: 243 SSMLGVCAKGERDVGPCHGISTNAQGKQMHTLSVKLGFERDLHLCNSLLDMYAKIGDMDS 302

Query: 408 AEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
           AE VF         SWN+MI GY      EKA E  + M  +GY PD++T++ +L+AC  
Sbjct: 303 AEKVFVNLNRHSVVSWNIMIAGYGNRCNSEKAAEYLQRMQSDGYEPDDVTYINMLTACVK 362

Query: 468 MGLIEEGKKHF 478
            G +  G++ F
Sbjct: 363 SGDVRTGRQIF 373



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 131/564 (23%), Positives = 226/564 (40%), Gaps = 86/564 (15%)

Query: 45  MEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADN 104
           MEK  S    + V     N  ++ +G+VVHA   RL    D FLS   +++YSKC    +
Sbjct: 1   MEKSKSLNLANLVQHCITNKAHL-SGKVVHARLFRLALFSDTFLSNHFIELYSKCDHIAS 59

Query: 105 ALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESS----------------- 147
           A  VF  I   ++ +W AI+    +    Q A ++F  M + +                 
Sbjct: 60  ACHVFDNIPHKNIFSWNAILAAYCKARNLQYACRLFLQMPQRNTVSLNTLISTMVRCGYE 119

Query: 148 --------------VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNAL 193
                         V P+     ++  A     D  CG   H V+ K G ES+  V NAL
Sbjct: 120 RQALDTYDSVMLDGVIPSHITFATVFSACGSLLDADCGRRTHGVVIKVGLESNIYVVNAL 179

Query: 194 VSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
           + MY + G  +   RVF  I   + V++  +           +   +F  ML KG + + 
Sbjct: 180 LCMYAKCGLNADALRVFRDIPEPNEVTFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDS 239

Query: 254 CTFIVILKACSS----------LSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
            +   +L  C+           +S    GKQ+H  ++K   + +  +  SL+DMY K G 
Sbjct: 240 VSLSSMLGVCAKGERDVGPCHGISTNAQGKQMHTLSVKLGFERDLHLCNSLLDMYAKIGD 299

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++ A   F +L    + ++  +I  Y     +E A +  ++M+ +G + ++ T  + L  
Sbjct: 300 MDSAEKVFVNLNRHSVVSWNIMIAGYGNRCNSEKAAEYLQRMQSDGYEPDDVTYINMLTA 359

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C                                    K G +     +F         SW
Sbjct: 360 C-----------------------------------VKSGDVRTGRQIFDCMPCPSLTSW 384

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N ++ GY ++    +A+E FR M  +   PD  T  V+LS+C+ +G +E GK+  ++ +K
Sbjct: 385 NAILSGYNQNADHREAVELFRKMQFQCQHPDRTTLAVILSSCAELGFLEAGKEVHAASQK 444

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            +G    +   + +I++  + GK  E+   +       + + W ++L   S    I    
Sbjct: 445 -FGFYDDVYVASSLINVYSKCGKM-ELSKHVFSKLPELDVVCWNSMLAGFS----INSLG 498

Query: 544 KDAEKLLELEPKMESNYVFPSDIS 567
           +DA   L    KM     FPS+ S
Sbjct: 499 QDA---LSFFKKMRQLGFFPSEFS 519



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/446 (23%), Positives = 197/446 (44%), Gaps = 40/446 (8%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A++VF ++   +VVSWN ++ GY    + +K       M+    +    +   +L  
Sbjct: 300 MDSAEKVFVNLNRHSVVSWNIMIAGYGNRCNSEKAAEYLQRMQSDGYEPDDVTYINMLTA 359

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              SG ++ G+                                   ++F  +  P + +W
Sbjct: 360 CVKSGDVRTGR-----------------------------------QIFDCMPCPSLTSW 384

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            AI++  +Q    +EA ++F  M+     P++  L  ++ +  E G    G+ +HA   K
Sbjct: 385 NAILSGYNQNADHREAVELFRKMQFQCQHPDRTTLAVILSSCAELGFLEAGKEVHAASQK 444

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +GF  D  V ++L+++Y + G++     VF  +   D V WN++ + F         L  
Sbjct: 445 FGFYDDVYVASSLINVYSKCGKMELSKHVFSKLPELDVVCWNSMLAGFSINSLGQDALSF 504

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M   GF P+  +F  ++ +C+ LS +  G+Q HA  +K     +  VG+SL++MY K
Sbjct: 505 FKKMRQLGFFPSEFSFATVVSSCAKLSSLFQGQQFHAQIVKDGFLDDIFVGSSLIEMYCK 564

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +  A   FD +  ++   +  +I  YAQ G+   AL  +  M   G K ++ T  + 
Sbjct: 565 CGDVNGARCFFDVMPGRNTVTWNEMIHGYAQNGDGHNALCLYNDMISSGEKPDDITYVAV 624

Query: 361 LNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
           L  CS  A +  G  + +++  K G +  +   T ++   ++ G  ++ E +      +D
Sbjct: 625 LTACSHSALVDEGLEIFNAMLQKYGVVPKVAHYTCIIDCLSRAGRFNEVEVILDAMPCKD 684

Query: 420 TA-SWNMMIGGYVKHG---LGEKALE 441
            A  W +++     H    L ++A E
Sbjct: 685 DAVVWEVVLSSCRIHANLSLAKRAAE 710



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 134/291 (46%), Gaps = 8/291 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           MEL+K VF  +PEL+VV WN++L G++ +  GQ  +  F  M+ +    S+FS +TV+  
Sbjct: 467 MELSKHVFSKLPELDVVCWNSMLAGFSINSLGQDALSFFKKMRQLGFFPSEFSFATVVSS 526

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    +  GQ  HA  ++ G   D F+  SL++MY KCG  + A   F  +   + V W
Sbjct: 527 CAKLSSLFQGQQFHAQIVKDGFLDDIFVGSSLIEMYCKCGDVNGARCFFDVMPGRNTVTW 586

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG-ESIHAVIC 179
             +I    Q G    A  ++N M  S  KP+     +++ A + +     G E  +A++ 
Sbjct: 587 NEMIHGYAQNGDGHNALCLYNDMISSGEKPDDITYVAVLTACSHSALVDEGLEIFNAMLQ 646

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALFSRFQDYESPDQGL 238
           KYG          ++      GR +    + +A+    D+V W  + S  + + +     
Sbjct: 647 KYGVVPKVAHYTCIIDCLSRAGRFNEVEVILDAMPCKDDAVVWEVVLSSCRIHANLSLAK 706

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
           R   + L +    N  +++++    SSL     GK   AH ++  +  N V
Sbjct: 707 RA-AEELYRLDPQNSASYVLLANMYSSL-----GKWDDAHVVRDLMSHNQV 751


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 185/572 (32%), Positives = 300/572 (52%), Gaps = 44/572 (7%)

Query: 71  QVVHAMAIRLGC-----ALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT 125
           + +HA  I+ G      AL K L   +V  +   G    A+ VF  I++P+++ W  +  
Sbjct: 5   RXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFD-GFP-YAISVFDTIQEPNLLIWNTMFR 62

Query: 126 CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
                     A K++ +M    + P+ +    L+++  ++  ++ G+ IH  + K GF+ 
Sbjct: 63  GHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDL 122

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS------------------------- 220
           D  V  +L+SMY +NGR+    +VF+  +H+D VS                         
Sbjct: 123 DIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIP 182

Query: 221 ------WNALFSRFQDYESPDQGLRIFYQMLL-KGFKPNMCTFIVILKACSSLSDVGFGK 273
                 WNA+ S + +  +  + L +F +M++    +P+  T + ++ AC+    +  G+
Sbjct: 183 GKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGR 242

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
            +H+    H    N  +  +L+D+Y K G +E A   FD L NKD+ ++  +I  Y    
Sbjct: 243 HVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMN 302

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS- 392
             + AL  F++M   G   N+ T+ S L  C+ +  +  GR +H    K    +   VS 
Sbjct: 303 LYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSS 362

Query: 393 --TALVAMYAKCGSIDDAEAVFKGS-ALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDE 449
             T+L+ MYAKCG ID A+ VF  S + R  ++WN MI G+  HG    A + F  M   
Sbjct: 363 LQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMN 422

Query: 450 GYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTE 509
           G  PD+ITFV +LSACSH G+++ G+  F S+ + Y ITP ++H+ CMID+LG +G F E
Sbjct: 423 GIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKE 482

Query: 510 IENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISAT 569
            E  I    + P+ ++W +LL AC  HGN+EL E  A+KL+++EP    +YV  S+I A 
Sbjct: 483 AEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYAA 542

Query: 570 QGRWNDFSGVRALLSSQGIKKE-PSCSWIEVD 600
            GRWN+ + +RALL+ +G+KK+ P CS IE+D
Sbjct: 543 AGRWNEVAKIRALLNDKGMKKKVPGCSSIEID 574



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 158/325 (48%), Gaps = 20/325 (6%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLK 59
           +E A+++F  +P  +VVSWNA+++GY E+G+ ++ + LF  M  M   +  + ++ TV+ 
Sbjct: 171 IESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVS 230

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             A S  I+ G+ VH+     G A +  +  +L+D+YSK G  + A ++F  + + DV++
Sbjct: 231 ACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVIS 290

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  +I         +EA  +F  M  S   PN   + S++ A    G    G  IH  I 
Sbjct: 291 WNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIN 350

Query: 180 K--YGFESD-TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS-WNALFSRFQDYESPD 235
           K   G  ++ + +  +L+ MY + G +    +VF++     S+S WNA+ S F  +   +
Sbjct: 351 KKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRAN 410

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
               IF +M + G +P+  TF+ +L ACS    +  G+ +                 S+ 
Sbjct: 411 AAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIF---------------RSMT 455

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLF 320
             Y+ +  LE  G   D L +  LF
Sbjct: 456 RGYEITPKLEHYGCMIDLLGHSGLF 480


>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
 gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 176/533 (33%), Positives = 289/533 (54%), Gaps = 13/533 (2%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII----TCLD 128
           +HA  +        FL   ++D+     LA  +L VF ++  P++ A+  ++    T   
Sbjct: 52  IHAQMLINSIPKPNFLLSKIIDLKD---LAYASL-VFNQLTKPNIYAFNVMLRGLATTWK 107

Query: 129 QQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTL 188
           +   C E   ++  ++   +K N F    L  A         G+  H ++ K G + D  
Sbjct: 108 KYDFCVE---LYYKLKSLGLKANNFTYPFLFIACGNVRGLVHGKIGHCLVFKAGLDGDEY 164

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG 248
           V ++L++MY   G + +  +VF+ +  +D VSWN++ S +       + + +F +M  +G
Sbjct: 165 VNHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEG 224

Query: 249 FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
           F+P+  T + +L AC  L D+G G+ +    ++  ++ N  +G++L+DMY K G L  A 
Sbjct: 225 FEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISAR 284

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
             FDS+ NKD+  + AIIT YAQ G +  A+  F  MR  G   +  T+   L+ CS + 
Sbjct: 285 RVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIG 344

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
            L  G+ + + A + G   D++V++AL+ MYAKCGS+DDA  VF+    ++  SWN MI 
Sbjct: 345 ALDLGKWVETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMIS 404

Query: 429 GYVKHGLGEKALEAFRMM-LDEGYV-PDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
               HG  ++AL  FR M  D G V P++ITF+ VLSAC H GL++EG++ F S+   +G
Sbjct: 405 ALAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQLFESMNLSFG 464

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDA 546
           + P ++H++CM+D+  RAG   E  + I +    P+ +V  +LLGAC    N ++ E+  
Sbjct: 465 LVPKVEHYSCMVDLCARAGLLYEAWDLIKKMPGKPDEIVLGSLLGACQRRRNADVGERVI 524

Query: 547 EKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +  LE+E     NYV  S I A   RW+D + +R L+   G+ K P CSWI++
Sbjct: 525 QLFLEMELSNSGNYVISSKIYANMRRWDDSAKMRVLMRQCGVSKTPGCSWIDI 577



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 112/414 (27%), Positives = 218/414 (52%), Gaps = 4/414 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKV-MHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           A  VF  + + N+ ++N +L G A +       + L+  +K +  K + F+   +     
Sbjct: 80  ASLVFNQLTKPNIYAFNVMLRGLATTWKKYDFCVELYYKLKSLGLKANNFTYPFLFIACG 139

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           N   +  G++ H +  + G   D++++ SL+ MY++CG    A KVF  + D D+V+W +
Sbjct: 140 NVRGLVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVFDEMGDRDLVSWNS 199

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I+   + G  +EA  +F  MRE   +P++  L S++ A  + GD   G  +   + +  
Sbjct: 200 MISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKK 259

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            E ++ +G+AL+ MY + G +    RVF+++ ++D V+WNA+ + +    + ++ + +F 
Sbjct: 260 MEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFN 319

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            M   G  P+  T I +L ACS++  +  GK +  H  +  L  +  V ++L+DMY K G
Sbjct: 320 GMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQHDVYVASALIDMYAKCG 379

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG--IKSNEFTLASC 360
            L+DA   F+S+ +K+  ++ A+I++ A  G+A+ AL  FR+M  +   ++ N+ T    
Sbjct: 380 SLDDAVRVFESMPHKNEVSWNAMISALAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGV 439

Query: 361 LNGCSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
           L+ C     +  GR L  S+ +  G +  +   + +V + A+ G + +A  + K
Sbjct: 440 LSACVHAGLVDEGRQLFESMNLSFGLVPKVEHYSCMVDLCARAGLLYEAWDLIK 493



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 86/277 (31%), Positives = 148/277 (53%), Gaps = 2/277 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A++VF  M + ++VSWN++++GY++ G  ++ + LF  M++   +  + +L +VL  
Sbjct: 179 MGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGA 238

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             + G +  G+ V    +     ++ ++  +L+DMY KCG   +A +VF  + + DVV W
Sbjct: 239 CGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTW 298

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            AIIT   Q G   EA  +FN MRE+   P++  +  ++ A +  G    G+ +     +
Sbjct: 299 NAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHASE 358

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G + D  V +AL+ MY + G +    RVFE++ H++ VSWNA+ S    +    + L +
Sbjct: 359 KGLQHDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMISALAFHGQAQEALSL 418

Query: 241 FYQMLLKG--FKPNMCTFIVILKACSSLSDVGFGKQL 275
           F +M       +PN  TFI +L AC     V  G+QL
Sbjct: 419 FRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQL 455


>gi|255544622|ref|XP_002513372.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547280|gb|EEF48775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 597

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 185/534 (34%), Positives = 297/534 (55%), Gaps = 3/534 (0%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +K G ++H+  IR G   +  LS  L+  Y K G   NA KVF R+ + +VV+W A I+ 
Sbjct: 53  LKQGCLIHSHIIRNGFDSNLHLSTKLIIFYVKFGETINARKVFDRMPERNVVSWTAQISG 112

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             + G  Q+A  +F+ M  + V+ NQF   S++RA T       G  IH  I K  F  +
Sbjct: 113 YAKNGHYQDALLVFSQMGRAGVRANQFTYGSVLRACTGLRCLERGMQIHGCIQKNRFIGN 172

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             V +ALV ++ + G +     +FE ++ +D VSWNA+   +   +  D   R+FY M+ 
Sbjct: 173 LFVQSALVDLHSKCGNMEDARYLFETMSERDVVSWNAVIGGYAAQDFNDDSFRMFYSMMG 232

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGTSLVDMYDKSGCLE 305
           +G  P+  T   +LKA S  +++    Q+H   I+    G+H+ +  SL+D Y KS  ++
Sbjct: 233 EGVTPDCFTLGSVLKASSRANNLIKVCQIHGIIIQLGF-GSHIDLNGSLIDAYAKSEGMK 291

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQ-AGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
            A   + S+  KD+ ++TAI+T YA+    +  AL  F+ M+   ++ ++ T  + LN C
Sbjct: 292 SASALYKSMLKKDVISFTAIMTGYARKCSYSREALDLFKDMQHIFMEIDDVTFCTMLNVC 351

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
           + +A+L+ GR +H++A+K     D+    ALV MYAK G I+DA   F     ++  SW 
Sbjct: 352 ADIASLSIGRQIHALAIKYKPSYDVATGNALVDMYAKSGEIEDATRAFYEMKEKNVISWT 411

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
            +I GY KHG G +A+  ++ M  EG  P++ITF+ +L ACSH GL  EG + F+++   
Sbjct: 412 SLITGYGKHGYGHEAIALYKKMEYEGLKPNDITFLSLLFACSHSGLTGEGWECFNNMITK 471

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEK 544
           Y I P  +H++CMID+  R G+  E  N I +  + PN+ +W  +LGACS +G++ L E 
Sbjct: 472 YNILPRAEHYSCMIDLFARGGQLEEAYNMICKMNIKPNSSLWGAILGACSIYGHMSLGEV 531

Query: 545 DAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
            A  LL ++P+  +NYV  + I A  G W+    +R L+  + +KK P  S I+
Sbjct: 532 AATHLLRMDPENSANYVVLAGIYAASGSWDKACRMRNLMEYRSLKKIPGYSIIQ 585



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 134/502 (26%), Positives = 248/502 (49%), Gaps = 27/502 (5%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF  MPE NVVSW A ++GYA++G  Q  + +F  M     + ++F+  +VL+    
Sbjct: 91  ARKVFDRMPERNVVSWTAQISGYAKNGHYQDALLVFSQMGRAGVRANQFTYGSVLRACTG 150

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ G  +H    +     + F+  +LVD++SKCG  ++A  +F  + + DVV+W A+
Sbjct: 151 LRCLERGMQIHGCIQKNRFIGNLFVQSALVDLHSKCGNMEDARYLFETMSERDVVSWNAV 210

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I     Q    ++ ++F  M    V P+ F L S+++A++   +      IH +I + GF
Sbjct: 211 IGGYAAQDFNDDSFRMFYSMMGEGVTPDCFTLGSVLKASSRANNLIKVCQIHGIIIQLGF 270

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF-QDYESPDQGLRIFY 242
            S   +  +L+  Y ++  +   S +++++  +D +S+ A+ + + +      + L +F 
Sbjct: 271 GSHIDLNGSLIDAYAKSEGMKSASALYKSMLKKDVISFTAIMTGYARKCSYSREALDLFK 330

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            M     + +  TF  +L  C+ ++ +  G+Q+HA  IK+    +   G +LVDMY KSG
Sbjct: 331 DMQHIFMEIDDVTFCTMLNVCADIASLSIGRQIHALAIKYKPSYDVATGNALVDMYAKSG 390

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            +EDA  AF  +  K++ ++T++IT Y + G    A+  ++KM  EG+K N+ T  S L 
Sbjct: 391 EIEDATRAFYEMKEKNVISWTSLITGYGKHGYGHEAIALYKKMEYEGLKPNDITFLSLLF 450

Query: 363 GCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA-EAVFKGSALRDT 420
            CS       G    +++  K   L      + ++ ++A+ G +++A   + K +   ++
Sbjct: 451 ACSHSGLTGEGWECFNNMITKYNILPRAEHYSCMIDLFARGGQLEEAYNMICKMNIKPNS 510

Query: 421 ASWNMMIGG---YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS-----------ACS 466
           + W  ++G    Y    LGE A      M      P+     VVL+           AC 
Sbjct: 511 SLWGAILGACSIYGHMSLGEVAATHLLRM-----DPENSANYVVLAGIYAASGSWDKACR 565

Query: 467 HMGLIEEGKKHFSSIKKIYGIT 488
              L+E     + S+KKI G +
Sbjct: 566 MRNLME-----YRSLKKIPGYS 582



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 107/412 (25%), Positives = 199/412 (48%), Gaps = 12/412 (2%)

Query: 158 LVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQD 217
           +++   ET D + G  IH+ I + GF+S+  +   L+  Y++ G      +VF+ +  ++
Sbjct: 43  ILQLCIETEDLKQGCLIHSHIIRNGFDSNLHLSTKLIIFYVKFGETINARKVFDRMPERN 102

Query: 218 SVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHA 277
            VSW A  S +         L +F QM   G + N  T+  +L+AC+ L  +  G Q+H 
Sbjct: 103 VVSWTAQISGYAKNGHYQDALLVFSQMGRAGVRANQFTYGSVLRACTGLRCLERGMQIHG 162

Query: 278 HTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEM 337
              K+   GN  V ++LVD++ K G +EDA   F++++ +D+ ++ A+I  YA     + 
Sbjct: 163 CIQKNRFIGNLFVQSALVDLHSKCGNMEDARYLFETMSERDVVSWNAVIGGYAAQDFNDD 222

Query: 338 ALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVA 397
           + + F  M  EG+  + FTL S L   S    L     +H I ++ G    + ++ +L+ 
Sbjct: 223 SFRMFYSMMGEGVTPDCFTLGSVLKASSRANNLIKVCQIHGIIIQLGFGSHIDLNGSLID 282

Query: 398 MYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKH-GLGEKALEAFRMMLDEGYVPDEI 456
            YAK   +  A A++K    +D  S+  ++ GY +      +AL+ F+ M       D++
Sbjct: 283 AYAKSEGMKSASALYKSMLKKDVISFTAIMTGYARKCSYSREALDLFKDMQHIFMEIDDV 342

Query: 457 TFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFIT 515
           TF  +L+ C+ +  +  G++ H  +IK  Y  +  +     ++D+  ++G+  +      
Sbjct: 343 TFCTMLNVCADIASLSIGRQIHALAIK--YKPSYDVATGNALVDMYAKSGEIEDATRAFY 400

Query: 516 ETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           E K   N + W +L+     HG          + + L  KME   + P+DI+
Sbjct: 401 EMK-EKNVISWTSLITGYGKHGY-------GHEAIALYKKMEYEGLKPNDIT 444



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 115/211 (54%)

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
           ++ IL+ C    D+  G  +H+H I++  D N  + T L+  Y K G   +A   FD + 
Sbjct: 40  YMKILQLCIETEDLKQGCLIHSHIIRNGFDSNLHLSTKLIIFYVKFGETINARKVFDRMP 99

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRL 375
            +++ ++TA I+ YA+ G  + AL  F +M   G+++N+FT  S L  C+ +  L  G  
Sbjct: 100 ERNVVSWTAQISGYAKNGHYQDALLVFSQMGRAGVRANQFTYGSVLRACTGLRCLERGMQ 159

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           +H    K   + ++FV +ALV +++KCG+++DA  +F+  + RD  SWN +IGGY     
Sbjct: 160 IHGCIQKNRFIGNLFVQSALVDLHSKCGNMEDARYLFETMSERDVVSWNAVIGGYAAQDF 219

Query: 436 GEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
            + +   F  M+ EG  PD  T   VL A S
Sbjct: 220 NDDSFRMFYSMMGEGVTPDCFTLGSVLKASS 250



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 180/414 (43%), Gaps = 45/414 (10%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A+ +F++M E +VVSWNA++ GYA          +F SM         F+L +VLK 
Sbjct: 189 MEDARYLFETMSERDVVSWNAVIGGYAAQDFNDDSFRMFYSMMGEGVTPDCFTLGSVLKA 248

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            + +  +     +H + I+LG      L+ SL+D Y+K     +A  ++  +   DV+++
Sbjct: 249 SSRANNLIKVCQIHGIIIQLGFGSHIDLNGSLIDAYAKSEGMKSASALYKSMLKKDVISF 308

Query: 121 GAIITCLDQQ-GCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            AI+T   ++    +EA  +F  M+   ++ +     +++    +      G  IHA+  
Sbjct: 309 TAIMTGYARKCSYSREALDLFKDMQHIFMEIDDVTFCTMLNVCADIASLSIGRQIHALAI 368

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           KY    D   GNALV MY ++G +   +R F  +  ++ +SW +L + +  +    + + 
Sbjct: 369 KYKPSYDVATGNALVDMYAKSGEIEDATRAFYEMKEKNVISWTSLITGYGKHGYGHEAIA 428

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           ++ +M  +G KPN  TF+ +L ACS     G G +                         
Sbjct: 429 LYKKMEYEGLKPNDITFLSLLFACSHSGLTGEGWE------------------------- 463

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
              C  +    ++ L   +   Y+ +I  +A+ G+ E A     KM    IK N     +
Sbjct: 464 ---CFNNMITKYNILPRAE--HYSCMIDLFARGGQLEEAYNMICKM---NIKPNSSLWGA 515

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA-----LVAMYAKCGSIDDA 408
            L  CS    ++ G       V   HLL M    +     L  +YA  GS D A
Sbjct: 516 ILGACSIYGHMSLGE------VAATHLLRMDPENSANYVVLAGIYAASGSWDKA 563


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 180/539 (33%), Positives = 287/539 (53%), Gaps = 8/539 (1%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSK-CGLADNALKVFYRIKDPDV--VAWGAI 123
           I++ + +HA  I  G   D+F+   + + + K  G  D A   F    D  V  + +  +
Sbjct: 18  IRSLKQIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYAFD-FLNQTDLHVGTLPYNTL 76

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I         + A  ++  +  +   P+ +    +++A T+    + GE +H V  K GF
Sbjct: 77  IAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAVKMGF 136

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D  V N+L+  Y   G+     RVF+ +  +D VSW  L S +      D+ + +F +
Sbjct: 137 LCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLK 196

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M      PN+ TF+ +L AC  +  +  GK +H    K +     VVG +LVDMY K  C
Sbjct: 197 M---DVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCEC 253

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L +A   FD L ++D+ ++T+II+   Q  + + +L+ F  M++ G++ +   L S L+ 
Sbjct: 254 LCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSA 313

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +  L  GR +     + G   D+ + TALV MYAKCG I+ A  +F G   R+  +W
Sbjct: 314 CASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTW 373

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS-IK 482
           N ++GG   HG G +AL+ F +M+  G  P+E+TF+ +L+AC H GL+ EG+ +F   I 
Sbjct: 374 NALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMIS 433

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           + +  +P ++H+ CMID+L RAG   E   FI    L P+ L+W  LL AC  +GN+EL 
Sbjct: 434 QPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIWGALLSACKANGNVELS 493

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           ++    LLEL+ +    YV  S+I AT  RW+D + VR L+  +GI+K P  S IEVDG
Sbjct: 494 QEILSHLLELKSQDSGVYVLLSNIYATNERWDDVTRVRRLMKDKGIRKFPGSSVIEVDG 552



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 182/369 (49%), Gaps = 5/369 (1%)

Query: 8   FKSMPELNV--VSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSG 65
           F +  +L+V  + +N L+  YA S   +    ++  +         ++   VLK      
Sbjct: 60  FLNQTDLHVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFL 119

Query: 66  YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT 125
            ++ G+ VH +A+++G   D ++  SL+  YS CG    A +VF  +   DVV+W  +I+
Sbjct: 120 GVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLIS 179

Query: 126 CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
              + G   EA    NL  +  V PN     S++ A    G    G+ +H ++ K  F  
Sbjct: 180 GYVRTGLFDEA---INLFLKMDVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGI 236

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
             +VGNALV MY++   +    ++F+ +  +D VSW ++ S     + P   L +FY M 
Sbjct: 237 GLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQ 296

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
           + G +P+      +L AC+SL  + +G+ +  +  +  ++ +  +GT+LVDMY K GC+E
Sbjct: 297 ISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIE 356

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
            A   F+ + N+++F + A++   A  G    ALK F  M   GI+ NE T  + L  C 
Sbjct: 357 MALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACC 416

Query: 366 PVATLANGR 374
               +A GR
Sbjct: 417 HSGLVAEGR 425



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 166/338 (49%), Gaps = 6/338 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A RVF  M   +VVSW  L++GY  +G   + ++LF  M D+    + F   +VL     
Sbjct: 159 AGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLKM-DVVPNVATFV--SVLVACGR 215

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            GY+  G+ VH +  +    +   +  +LVDMY KC     A K+F  + D D+V+W +I
Sbjct: 216 MGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSI 275

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+ L Q    +++ ++F  M+ S V+P++ +LTS++ A    G    G  +   I + G 
Sbjct: 276 ISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQGI 335

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E D  +G ALV MY + G +     +F  I +++  +WNAL      +    + L+ F  
Sbjct: 336 EWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFEL 395

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT--SLVDMYDKS 301
           M+  G +PN  TF+ IL AC     V  G+      I    + +  +     ++D+  ++
Sbjct: 396 MIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRA 455

Query: 302 GCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMA 338
           G L++A     ++    D+  + A++++    G  E++
Sbjct: 456 GLLDEAYKFIRNMPLPPDVLIWGALLSACKANGNVELS 493



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 4/171 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E+A  +F  +P  N+ +WNALL G A  G G + +  F  M     + ++ +   +L  
Sbjct: 355 IEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTA 414

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLS--CSLVDMYSKCGLADNALKVFYRIK-DPDV 117
             +SG +  G+      I         L     ++D+  + GL D A K    +   PDV
Sbjct: 415 CCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDV 474

Query: 118 VAWGAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGD 167
           + WGA+++     G  + + +I  +L+   S     +VL S + AT E  D
Sbjct: 475 LIWGALLSACKANGNVELSQEILSHLLELKSQDSGVYVLLSNIYATNERWD 525


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 179/564 (31%), Positives = 289/564 (51%), Gaps = 35/564 (6%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMY--SKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
           +HA  +R     D + +  L+  Y  S C     A  VF +I  P++  W  +I      
Sbjct: 91  IHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYASS 150

Query: 131 GCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
               ++  IF +++   S  PN+F    L +A +       G  +H ++ K    SD  +
Sbjct: 151 SDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFI 210

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
            N+L++ Y  +G      RVF  +  +D VSWNA+ + F     PD+ L +F +M +K  
Sbjct: 211 LNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDV 270

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
           KPN+ T + +L AC+   D+ FG+ + ++   +    + ++  +++DMY K GC+ DA  
Sbjct: 271 KPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKD 330

Query: 310 AFDSLANKDLFAYT-------------------------------AIITSYAQAGEAEMA 338
            F+ ++ KD+ ++T                               A+I++Y Q G+  +A
Sbjct: 331 LFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVA 390

Query: 339 LKCFRKMRL-EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVA 397
           L  F +M+L +  K +E TL   L   + +  +  G  +H    K    L+  ++T+L+ 
Sbjct: 391 LSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLD 450

Query: 398 MYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEIT 457
           MYAKCG+++ A  VF     +D   W+ MIG    +G G+ AL+ F  ML+    P+ +T
Sbjct: 451 MYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVT 510

Query: 458 FVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET 517
           F  +L AC+H GL+ EG++ F  ++ +YGI P I+H+ C++DI GRAG   +  +FI + 
Sbjct: 511 FTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKM 570

Query: 518 KLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFS 577
            + P A VW  LLGACS HGN+EL E   + LLELEP     +V  S+I A  G W   S
Sbjct: 571 PIPPTAAVWGALLGACSRHGNVELAELAYQNLLELEPCNHGAFVLLSNIYAKAGDWEKVS 630

Query: 578 GVRALLSSQGIKKEPSCSWIEVDG 601
            +R L+    +KKEP CS I+V+G
Sbjct: 631 NLRKLMRDSDVKKEPWCSSIDVNG 654



 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 134/480 (27%), Positives = 223/480 (46%), Gaps = 35/480 (7%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKF-SKFSLSTVLKGFA 62
           AK VF  +P+ N+  WN L+ GYA S D  +   +F  M     +F +KF+   + K  +
Sbjct: 125 AKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAAS 184

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
               +  G V+H M I+   + D F+  SL++ Y   G  D A +VF  +   DVV+W A
Sbjct: 185 RLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNA 244

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I      G   +A  +F  M    VKPN   + S++ A  +  D   G  I + I   G
Sbjct: 245 MINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNG 304

Query: 183 FESDTLVGNALVSMY--------------------------MENGRVSYGSR-----VFE 211
           F    ++ NA++ MY                          M +G    G+      +F+
Sbjct: 305 FTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFD 364

Query: 212 AIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL-KGFKPNMCTFIVILKACSSLSDVG 270
           A+ H+ + +WNAL S ++    P   L +F++M L K  KP+  T I  L A + L  + 
Sbjct: 365 AMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAID 424

Query: 271 FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
           FG  +H +  KH ++ N  + TSL+DMY K G L  A   F ++  KD++ ++A+I + A
Sbjct: 425 FGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALA 484

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG-RLLHSIAVKTGHLLDM 389
             G+ + AL  F  M    IK N  T  + L  C+    +  G +L   +    G +  +
Sbjct: 485 MYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQI 544

Query: 390 FVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS-WNMMIGGYVKHGLGEKALEAFRMMLD 448
                +V ++ + G ++ A +  +   +  TA+ W  ++G   +HG  E A  A++ +L+
Sbjct: 545 QHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLE 604



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 178/397 (44%), Gaps = 43/397 (10%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           +LA RVF +MP  +VVSWNA++N +A  G   K + LF  M+  + K +  ++ +VL   
Sbjct: 225 DLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSAC 284

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV--- 118
           A    ++ G+ + +     G      L+ +++DMY KCG  ++A  +F ++ + D+V   
Sbjct: 285 AKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWT 344

Query: 119 ----------------------------AWGAIITCLDQQGCCQEAAKIFNLMRES-SVK 149
                                       AW A+I+  +Q G  + A  +F+ M+ S   K
Sbjct: 345 TMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAK 404

Query: 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRV 209
           P++  L   + A+ + G    G  IH  I K+    +  +  +L+ MY + G ++    V
Sbjct: 405 PDEVTLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEV 464

Query: 210 FEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDV 269
           F A+  +D   W+A+      Y      L +F  ML    KPN  TF  IL AC+    V
Sbjct: 465 FHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLV 524

Query: 270 GFGKQLHAHTIKHSLDG-----NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFA-YT 323
             G+QL        L G      H V   +VD++ ++G LE A    + +      A + 
Sbjct: 525 NEGEQLFEQM--EPLYGIVPQIQHYV--CVVDIFGRAGLLEKAASFIEKMPIPPTAAVWG 580

Query: 324 AIITSYAQAGEAEMALKCFRK-MRLEGIKSNEFTLAS 359
           A++ + ++ G  E+A   ++  + LE      F L S
Sbjct: 581 ALLGACSRHGNVELAELAYQNLLELEPCNHGAFVLLS 617



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 133/299 (44%), Gaps = 7/299 (2%)

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS--GC 303
           +KG K N      IL+     ++    KQ+HAH ++ S   +    + L+  Y  S   C
Sbjct: 62  VKGEKGNEVESTNILEFIDQCTNTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSC 121

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK-SNEFTLASCLN 362
           L  A   F+ +   +L+ +  +I  YA + +   +   F  M     +  N+FT      
Sbjct: 122 LIYAKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFK 181

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
             S +  L  G +LH + +K     D+F+  +L+  Y   G+ D A  VF     +D  S
Sbjct: 182 AASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVS 241

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN MI  +   GL +KAL  F+ M  +   P+ IT V VLSAC+    +E G+   S I+
Sbjct: 242 WNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIE 301

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV-WENLLGACSWHGNIE 540
              G T  +     M+D+  + G   + ++     K++   +V W  +L   +  GN +
Sbjct: 302 N-NGFTEHLILNNAMLDMYVKCGCINDAKDLF--NKMSEKDIVSWTTMLDGHAKLGNYD 357


>gi|449522919|ref|XP_004168473.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like, partial [Cucumis sativus]
          Length = 670

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 194/599 (32%), Positives = 305/599 (50%), Gaps = 34/599 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A++VF  +P+   V  NA++NGY ++      + L   M     +F  ++ +  LK 
Sbjct: 105 LENARKVFDEIPQPKTVLCNAMVNGYLQNERYNDCIELLKMMSRCHLEFDSYTCNFALKA 164

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                  + G  V  +A+  G A  +FL  S+++                          
Sbjct: 165 CMFLLDYEMGMEVIGLAVCKGLAGGRFLGSSILNFL------------------------ 200

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
                    +G  +E   +F  M  + ++P+   + SL+++  E  +   G+ +H  +  
Sbjct: 201 ---------EGLFREGYNLFLDMLYNKIEPSAVTMISLIQSCGEMRNLTFGKCMHGFVLG 251

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +G   DT V   L+ MY ++G V     +FE +  ++ VSWN + S +       + LR+
Sbjct: 252 FGMSRDTRVLTTLIDMYCKSGDVESARWIFENMPSRNLVSWNVMISGYVQNGLLVETLRL 311

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F ++++     +  T + +++ CS  +D+  GK LH    +  LD N V+ T++VD+Y K
Sbjct: 312 FQKLIMDDVGFDSGTVVSLIQLCSRTADLDGGKILHGFIYRRGLDLNLVLPTAIVDLYAK 371

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L  A   F+ + NK++ ++TA++   AQ G A  ALK F +M+ E +  N  TL S 
Sbjct: 372 CGSLAYASSVFERMKNKNVISWTAMLVGLAQNGHARDALKLFDQMQNERVTFNALTLVSL 431

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK-GSALRD 419
           +  C+ +  L  GR +H+   +     ++ V TAL+ MYAKC  I+ AE VFK G   +D
Sbjct: 432 VYCCTLLGLLREGRSVHATLTRFHFASEVVVMTALIDMYAKCSKINSAEMVFKYGLTPKD 491

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
              +N MI GY  HGLG KAL  +  M  EG  P+E TFV +LSACSH GL+EEG   F 
Sbjct: 492 VILYNSMISGYGMHGLGHKALCVYHRMNREGLQPNESTFVSLLSACSHSGLVEEGIALFQ 551

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           ++ K +  TPT K +AC++D+L RAG+  + E  I +   TP + + E LL  C  H +I
Sbjct: 552 NMVKDHNTTPTDKLYACIVDLLSRAGRLRQAEELINQMPFTPTSGILETLLNGCLLHKDI 611

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           EL  K A++LL LE +  S Y+  S+I A   RW+    VR L+  Q IKK P  S IE
Sbjct: 612 ELGVKLADRLLSLESRNPSIYITLSNIYAKASRWDSVKYVRGLMMEQEIKKIPGYSSIE 670



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 113/455 (24%), Positives = 218/455 (47%), Gaps = 38/455 (8%)

Query: 85  DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMR 144
           D+FL   LV  YS  G  +NA KVF  I  P  V   A++    Q     +  ++  +M 
Sbjct: 88  DQFLVAKLVAAYSSLGCLENARKVFDEIPQPKTVLCNAMVNGYLQNERYNDCIELLKMMS 147

Query: 145 ESSVKPNQFVLTSLVRATTETGDQRCG-ESIHAVICKYGFESDTLVGNALVSMYMENGRV 203
              ++ + +     ++A     D   G E I   +CK G      +G+++++ ++E    
Sbjct: 148 RCHLEFDSYTCNFALKACMFLLDYEMGMEVIGLAVCK-GLAGGRFLGSSILN-FLE---- 201

Query: 204 SYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKAC 263
                               LF          +G  +F  ML    +P+  T I ++++C
Sbjct: 202 -------------------GLFR---------EGYNLFLDMLYNKIEPSAVTMISLIQSC 233

Query: 264 SSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYT 323
             + ++ FGK +H   +   +  +  V T+L+DMY KSG +E A   F+++ +++L ++ 
Sbjct: 234 GEMRNLTFGKCMHGFVLGFGMSRDTRVLTTLIDMYCKSGDVESARWIFENMPSRNLVSWN 293

Query: 324 AIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKT 383
            +I+ Y Q G     L+ F+K+ ++ +  +  T+ S +  CS  A L  G++LH    + 
Sbjct: 294 VMISGYVQNGLLVETLRLFQKLIMDDVGFDSGTVVSLIQLCSRTADLDGGKILHGFIYRR 353

Query: 384 GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF 443
           G  L++ + TA+V +YAKCGS+  A +VF+    ++  SW  M+ G  ++G    AL+ F
Sbjct: 354 GLDLNLVLPTAIVDLYAKCGSLAYASSVFERMKNKNVISWTAMLVGLAQNGHARDALKLF 413

Query: 444 RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGR 503
             M +E    + +T V ++  C+ +GL+ EG+   +++ + +  +  +   A +ID+  +
Sbjct: 414 DQMQNERVTFNALTLVSLVYCCTLLGLLREGRSVHATLTRFHFASEVVVMTA-LIDMYAK 472

Query: 504 AGKFTEIENFITETKLTP-NALVWENLLGACSWHG 537
             K    E  + +  LTP + +++ +++     HG
Sbjct: 473 CSKINSAE-MVFKYGLTPKDVILYNSMISGYGMHG 506


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 197/628 (31%), Positives = 320/628 (50%), Gaps = 40/628 (6%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A +VF  + E + VSWN++++      + +  +  F  M  + + F   S + V    A 
Sbjct: 66  AYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLM--LMEGFEPSSFTLVSMALAC 123

Query: 64  SGYIKA-----GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
           S   K      G+ +H    R G     F + +L+ MY+K G  D+A  +    +D D+V
Sbjct: 124 SNLRKRDGLWLGKQIHGCCFRKG-HWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLV 182

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            W ++I+   Q     EA     LM    VKP+     S++ A +     R G+ IHA  
Sbjct: 183 TWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHA-- 240

Query: 179 CKYGFESD-----TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
             Y   +D     + VG+ALV MY   G+V  G  VF+++  +    WNA+ + +   E 
Sbjct: 241 --YALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEH 298

Query: 234 PDQGLRIFYQM-LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
            ++ L +F +M    G   N  T   I+ A      +   + +H + IK  L+ N  +  
Sbjct: 299 DEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQN 358

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLE--- 348
           +L+DMY + G ++ +   FDS+ ++D+ ++  IITSY   G +  AL    +M R+E   
Sbjct: 359 ALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKS 418

Query: 349 ------------GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALV 396
                         K N  TL + L GC+ ++ LA G+ +H+ A++      + V +ALV
Sbjct: 419 TYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALV 478

Query: 397 AMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG-----Y 451
            MYAKCG ++ A  VF    +R+  +WN++I  Y  HG G+++LE F  M+ EG      
Sbjct: 479 DMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEV 538

Query: 452 VPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIE 511
            P E+TF+ + ++CSH G+++EG   F  +K  +GI P   H+AC++D++GRAGK  E  
Sbjct: 539 KPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAY 598

Query: 512 NFITETKLTPNAL-VWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQ 570
             +       + +  W +LLGAC  + NIE+ E  AE LL+L+P + S+YV  S+I ++ 
Sbjct: 599 GLVNTMPSGFDKVGAWSSLLGACRIYHNIEIGEIAAENLLQLQPDVASHYVLLSNIYSSA 658

Query: 571 GRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           G W+    +R  + + G+KKEP CSWIE
Sbjct: 659 GLWDKAMNLRRRMKAMGVKKEPGCSWIE 686



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 145/510 (28%), Positives = 240/510 (47%), Gaps = 28/510 (5%)

Query: 52  FSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSC--SLVDMYSKCGLADNALKVF 109
           F+   VLK  A    +  G+ +HA   + G      ++   +LV+MY KCG   +A KVF
Sbjct: 11  FAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYKVF 70

Query: 110 YRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
            RI + D V+W +II+ L +    + A K F LM     +P+ F L S+  A +    + 
Sbjct: 71  DRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLRKRD 130

Query: 170 ---CGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS 226
               G+ IH    + G    T   NAL++MY + GR+     +      +D V+WN++ S
Sbjct: 131 GLWLGKQIHGCCFRKG-HWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMIS 189

Query: 227 RFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK-HSLD 285
            F   E   + L     M+L+G KP+  TF  +L ACS L  +  GK++HA+ ++   + 
Sbjct: 190 SFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVI 249

Query: 286 GNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM 345
            N  VG++LVDMY   G +E   + FDS+ ++ +  + A+I  YAQ+   E AL  F +M
Sbjct: 250 ENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEM 309

Query: 346 R-LEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404
               G+ SN  T++S +        ++    +H   +K G   + ++  AL+ MY++ G 
Sbjct: 310 EAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGD 369

Query: 405 IDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML-------------DEGY 451
           I  ++ +F     RD  SWN +I  YV  G    AL     M              DE  
Sbjct: 370 IKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQ 429

Query: 452 V---PDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKF 507
           V   P+ IT + VL  C+ +  + +GK+ H  +I+ +     T+   + ++D+  + G  
Sbjct: 430 VPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVG--SALVDMYAKCGCL 487

Query: 508 TEIENFITETKLTPNALVWENLLGACSWHG 537
                   +  +  N + W  ++ A   HG
Sbjct: 488 NLARRVFDQMPIR-NVITWNVIIMAYGMHG 516



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 157/307 (51%), Gaps = 7/307 (2%)

Query: 146 SSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES--DTLVGNALVSMYMENGRV 203
           S   P+ F   ++++A     +   G+ IHA + K+G+ S     + N LV+MY + G +
Sbjct: 4   SGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGL 63

Query: 204 SYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKAC 263
               +VF+ I  +D VSWN++ S    +E  +  ++ F  ML++GF+P+  T + +  AC
Sbjct: 64  GDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALAC 123

Query: 264 SSLSD---VGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLF 320
           S+L     +  GKQ+H    +           +L+ MY K G L+DA        ++DL 
Sbjct: 124 SNLRKRDGLWLGKQIHGCCFRKG-HWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLV 182

Query: 321 AYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIA 380
            + ++I+S++Q      AL   R M LEG+K +  T AS L  CS +  L  G+ +H+ A
Sbjct: 183 TWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYA 242

Query: 381 VKTGHLLD-MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
           ++T  +++  FV +ALV MY  CG ++    VF     R    WN MI GY +    EKA
Sbjct: 243 LRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKA 302

Query: 440 LEAFRMM 446
           L  F  M
Sbjct: 303 LMLFIEM 309



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/315 (30%), Positives = 160/315 (50%), Gaps = 10/315 (3%)

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLD--GNHVVGTSLVDMYDKS 301
           M+  GF P+   F  +LKA + + ++  GKQ+HAH  K       +  +  +LV+MY K 
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G L DA   FD +  +D  ++ +II++  +  E E+A+K FR M +EG + + FTL S  
Sbjct: 61  GGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMA 120

Query: 362 NGCSPVAT---LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
             CS +     L  G+ +H    + GH    F + AL+AMYAK G +DDA+++      R
Sbjct: 121 LACSNLRKRDGLWLGKQIHGCCFRKGH-WRTFSNNALMAMYAKLGRLDDAKSLLVLFEDR 179

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D  +WN MI  + ++    +AL   R+M+ EG  PD +TF  VL ACSH+ L+  GK+  
Sbjct: 180 DLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIH 239

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           +   +   +       + ++D+    G+  E    + ++ L     +W  ++     +  
Sbjct: 240 AYALRTDDVIENSFVGSALVDMYCNCGQ-VESGRLVFDSVLDRKIGLWNAMIAG---YAQ 295

Query: 539 IELDEKDAEKLLELE 553
            E DEK     +E+E
Sbjct: 296 SEHDEKALMLFIEME 310



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 154/330 (46%), Gaps = 23/330 (6%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSK-FSLSTVLK 59
           +E  + VF S+ +  +  WNA++ GYA+S   +K + LF  M+     +S   ++S+++ 
Sbjct: 268 VESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVP 327

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
            +     I   + +H   I+ G   +++L  +L+DMYS+ G    + ++F  ++D D+V+
Sbjct: 328 AYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVS 387

Query: 120 WGAIITCL-------DQQGCCQEAAKI---------FNLMRESSVKPNQFVLTSLVRATT 163
           W  IIT         D      E  +I         +N  ++   KPN   L +++    
Sbjct: 388 WNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCA 447

Query: 164 ETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNA 223
                  G+ IHA   +    S   VG+ALV MY + G ++   RVF+ +  ++ ++WN 
Sbjct: 448 SLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNV 507

Query: 224 LFSRFQDYESPDQGLRIFYQMLLKG-----FKPNMCTFIVILKACSSLSDVGFGKQL-HA 277
           +   +  +    + L +F  M+ +G      KP   TFI +  +CS    V  G  L H 
Sbjct: 508 IIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHK 567

Query: 278 HTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
              +H ++        +VD+  ++G +E+A
Sbjct: 568 MKNEHGIEPAPDHYACIVDLVGRAGKVEEA 597



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 131/284 (46%), Gaps = 26/284 (9%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFS---------- 50
           ++ +KR+F SM + ++VSWN ++  Y   G     + L   M+ +E+K +          
Sbjct: 370 IKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQ 429

Query: 51  ------KFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADN 104
                   +L TVL G A+   +  G+ +HA AIR   A    +  +LVDMY+KCG  + 
Sbjct: 430 VPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNL 489

Query: 105 ALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLM-----RESSVKPNQFVLTSLV 159
           A +VF ++   +V+ W  II      G  +E+ ++F  M     +   VKP +    +L 
Sbjct: 490 ARRVFDQMPIRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALF 549

Query: 160 RATTETGDQRCGESI-HAVICKYGFESDTLVGNALVSMYMENGRV--SYGSRVFEAIAHQ 216
            + + +G    G S+ H +  ++G E        +V +    G+V  +YG          
Sbjct: 550 ASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFD 609

Query: 217 DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVIL 260
              +W++L    + Y + + G  I  + LL+  +P++ +  V+L
Sbjct: 610 KVGAWSSLLGACRIYHNIEIG-EIAAENLLQ-LQPDVASHYVLL 651


>gi|449484072|ref|XP_004156776.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Cucumis sativus]
          Length = 754

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 177/601 (29%), Positives = 318/601 (52%), Gaps = 14/601 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYA---ESGDGQKVMHLFCSMKDMEKKFSKFSLSTV 57
           +E A  +F  +   +VV+W AL+ GY    ESG G K +       +M +     +  T+
Sbjct: 160 VESASIMFSEITVKDVVTWTALIVGYVQNNESGRGLKCLF------EMHRIGGTPNYKTI 213

Query: 58  LKGFANSGYIKA---GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
             GF     + A   G+ +H +A++ G    + +  +++ MYS+CG  + A + F ++  
Sbjct: 214 GSGFQACVDLDALVEGKCLHGLALKNGFLCFEVVKSTILSMYSRCGSPEEAYRCFCKLDQ 273

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
            D+++W +II    + G   E   +F  M+ S + P++ V++ ++     +     G++ 
Sbjct: 274 KDLISWTSIIAVHSKFGLMSECLHLFWEMQASEIIPDEIVISCMLMGFGNSDRIFEGKAF 333

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           HA I K       +  NAL+SMY + G +   +++F +  H+ S  W+ +   + +    
Sbjct: 334 HARILKQCCALSGITHNALLSMYCKFGHLGTANKIFHSF-HKSSEDWSTMILGYSNMGQK 392

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
           ++ +    +MLL G +P++ + + ++ +CS +  +  G+ +H + IK+S+  N  V  SL
Sbjct: 393 EKCISFLREMLLLGREPDLNSLVSVISSCSQVGAINIGRSIHCYAIKNSIIENVSVANSL 452

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           +DMY KSG +      F     +D+ ++  +I+SY Q+G    A+  F KM  E +  N+
Sbjct: 453 MDMYGKSGHVTATWRIFHRTLQRDVISWNTLISSYKQSGILAEAIILFDKMVKEKVYPNK 512

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            T    L+ C+ +A+L  G  +H    + G   ++ + TAL+ MYAKCG ++ +  +F  
Sbjct: 513 VTCIIVLSACAHLASLDEGEKIHQYIKENGFESNITIRTALIDMYAKCGELETSRKLFNS 572

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
           +  RD   WN+MI  Y  HG  E A+E F++M +    P+  TF+ +LSAC+H G + EG
Sbjct: 573 TEERDVILWNVMISNYGMHGHVESAMEIFQLMEESNIKPNAQTFLSLLSACNHTGHVLEG 632

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
           +  F  ++K YGI P++KH+A +ID+LGR+G     E  +    +TP+  VW +LL AC 
Sbjct: 633 RHLFDRMQK-YGIEPSLKHYASIIDLLGRSGSLEAAEALVLSMPITPDGTVWGSLLSACK 691

Query: 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSC 594
            H   E+  + A   +E +PK +  Y+  SD+ +  GRW++   VR ++  +G++K    
Sbjct: 692 IHNEFEVGVRLARYAIESDPKNDGYYIILSDLYSCLGRWDEVEKVRDMMKKRGVEKRAGW 751

Query: 595 S 595
           S
Sbjct: 752 S 752



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 143/592 (24%), Positives = 263/592 (44%), Gaps = 5/592 (0%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
            +  +F+ +   ++  WN+++  +  +GD Q+    +  M+      ++F++  V+   A
Sbjct: 60  FSTHLFRLIHSKDIFLWNSIIQSHFSNGDYQRAFDFYLQMRASSSLPNQFTVPMVVSTCA 119

Query: 63  NSGYIKAGQVVHAMAIRLGCAL-DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
                  G  +H +  +LG  + +  +  S + MYSKCG  ++A  +F  I   DVV W 
Sbjct: 120 ELMMFNHGMNIHGLTSKLGLFVGNSAIGSSFIYMYSKCGHVESASIMFSEITVKDVVTWT 179

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           A+I    Q        K    M      PN   + S  +A  +      G+ +H +  K 
Sbjct: 180 ALIVGYVQNNESGRGLKCLFEMHRIGGTPNYKTIGSGFQACVDLDALVEGKCLHGLALKN 239

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           GF    +V + ++SMY   G      R F  +  +D +SW ++ +    +    + L +F
Sbjct: 240 GFLCFEVVKSTILSMYSRCGSPEEAYRCFCKLDQKDLISWTSIIAVHSKFGLMSECLHLF 299

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
           ++M      P+      +L    +   +  GK  HA  +K     + +   +L+ MY K 
Sbjct: 300 WEMQASEIIPDEIVISCMLMGFGNSDRIFEGKAFHARILKQCCALSGITHNALLSMYCKF 359

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G L  A   F S  +K    ++ +I  Y+  G+ E  +   R+M L G + +  +L S +
Sbjct: 360 GHLGTANKIFHSF-HKSSEDWSTMILGYSNMGQKEKCISFLREMLLLGREPDLNSLVSVI 418

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           + CS V  +  GR +H  A+K   + ++ V+ +L+ MY K G +     +F  +  RD  
Sbjct: 419 SSCSQVGAINIGRSIHCYAIKNSIIENVSVANSLMDMYGKSGHVTATWRIFHRTLQRDVI 478

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SWN +I  Y + G+  +A+  F  M+ E   P+++T ++VLSAC+H+  ++EG+K    I
Sbjct: 479 SWNTLISSYKQSGILAEAIILFDKMVKEKVYPNKVTCIIVLSACAHLASLDEGEKIHQYI 538

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
           K+  G    I     +ID+  + G+          T+   + ++W  ++     HG++E 
Sbjct: 539 KE-NGFESNITIRTALIDMYAKCGELETSRKLFNSTE-ERDVILWNVMISNYGMHGHVE- 595

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPS 593
              +  +L+E      +   F S +SA     +   G       Q    EPS
Sbjct: 596 SAMEIFQLMEESNIKPNAQTFLSLLSACNHTGHVLEGRHLFDRMQKYGIEPS 647



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 137/496 (27%), Positives = 224/496 (45%), Gaps = 13/496 (2%)

Query: 74  HAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCC 133
           H++ I  G + + F +  L+  Y+       +  +F  I   D+  W +II      G  
Sbjct: 30  HSLIITTGNSNNVFFATKLMAFYAYHRKPAFSTHLFRLIHSKDIFLWNSIIQSHFSNGDY 89

Query: 134 QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG-FESDTLVGNA 192
           Q A   +  MR SS  PNQF +  +V    E      G +IH +  K G F  ++ +G++
Sbjct: 90  QRAFDFYLQMRASSSLPNQFTVPMVVSTCAELMMFNHGMNIHGLTSKLGLFVGNSAIGSS 149

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
            + MY + G V   S +F  I  +D V+W AL   +       +GL+  ++M   G  PN
Sbjct: 150 FIYMYSKCGHVESASIMFSEITVKDVVTWTALIVGYVQNNESGRGLKCLFEMHRIGGTPN 209

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
             T     +AC  L  +  GK LH   +K+      VV ++++ MY + G  E+A   F 
Sbjct: 210 YKTIGSGFQACVDLDALVEGKCLHGLALKNGFLCFEVVKSTILSMYSRCGSPEEAYRCFC 269

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
            L  KDL ++T+II  +++ G     L  F +M+   I  +E  ++  L G      +  
Sbjct: 270 KLDQKDLISWTSIIAVHSKFGLMSECLHLFWEMQASEIIPDEIVISCMLMGFGNSDRIFE 329

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
           G+  H+  +K    L      AL++MY K G +  A  +F  S  + +  W+ MI GY  
Sbjct: 330 GKAFHARILKQCCALSGITHNALLSMYCKFGHLGTANKIFH-SFHKSSEDWSTMILGYSN 388

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTI 491
            G  EK +   R ML  G  PD  + V V+S+CS +G I  G+  H  +IK    I   +
Sbjct: 389 MGQKEKCISFLREMLLLGREPDLNSLVSVISSCSQVGAINIGRSIHCYAIKN--SIIENV 446

Query: 492 KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551
                ++D+ G++G  T        T L  + + W  L+ +    G +      AE ++ 
Sbjct: 447 SVANSLMDMYGKSGHVTATWRIFHRT-LQRDVISWNTLISSYKQSGIL------AEAII- 498

Query: 552 LEPKMESNYVFPSDIS 567
           L  KM    V+P+ ++
Sbjct: 499 LFDKMVKEKVYPNKVT 514


>gi|347954480|gb|AEP33740.1| chlororespiratory reduction 21, partial [Matthiola maderensis]
          Length = 807

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 179/599 (29%), Positives = 311/599 (51%), Gaps = 32/599 (5%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF  +P+ N V+WNAL+ GY ++G  ++ + L   M+    + ++ ++ST L   AN
Sbjct: 203 ARKVFDYIPDRNAVAWNALMVGYVQNGMYEEAIRLLSEMRKEGIEPTRVTVSTCLSASAN 262

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G I+ G+  HA+AI  G  LD  L  S+++ Y K GL + A  +F  + + DVV W  +
Sbjct: 263 MGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVVTWNLL 322

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   QQG  +EA  +  LMR  ++K +   L++L+ A T T + + G+ I     ++G 
Sbjct: 323 ISGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGL 382

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           ESD ++ +  V MY + G +    +VF++   +D + WN L S + D     + LR+FY+
Sbjct: 383 ESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYE 442

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M L+   PN+ T+ +I+ +      V   K++                            
Sbjct: 443 MQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQ------------------------- 477

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++ +G+        +L ++T ++    Q G +E A+   RKM+  G++ N FT+   L+ 
Sbjct: 478 MQSSGIF------PNLISWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNAFTITVALSA 531

Query: 364 CSPVATLANGRLLHSIAVKTGHL-LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
           C  +A+L  GR +H   ++         + T+LV MYAKCG I+ AE VF      +   
Sbjct: 532 CVNLASLHFGRSIHGYIIRNQQYSFSASIETSLVDMYAKCGDINKAERVFGSKLCSELPL 591

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           +N MI  Y  +G   +A+  +R + D G  PD IT   +LSAC++   + +  + F  + 
Sbjct: 592 YNAMISAYALYGKVREAITLYRSLEDGGVKPDNITITSLLSACNYGRDVNQAIEVFRDMV 651

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
             +G+ P ++H+  M+D+L  AG+  +    + E    P+A + ++L  +CS     EL 
Sbjct: 652 SKHGMKPCLEHYGLMVDLLASAGETDKALRLMEEMPYKPDARMVQSLFESCSKQHKTELV 711

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           E  ++ LLE EP    NYV  S+  A +G W++ + +R ++  +G+KK+P CSWI++ G
Sbjct: 712 EYLSKHLLESEPDNSGNYVMISNAYAVEGSWDEVAKMREMMKVKGLKKKPGCSWIQIKG 770



 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 138/511 (27%), Positives = 253/511 (49%), Gaps = 6/511 (1%)

Query: 28  ESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLG--CALD 85
           ++G+ ++ + L   M     +        +L+G      +  GQ +HA  ++ G   A +
Sbjct: 23  KNGEIREALSLVTEMDYRNIRIGPEIYGEILQGCVYERDLCTGQQIHAQILKKGDFYARN 82

Query: 86  KFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRE 145
           +++   LV  Y+KC   + A  +F +++  +V +W AII    + G  + A   F  M E
Sbjct: 83  EYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEGALMGFVEMLE 142

Query: 146 SSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSY 205
           + + P+ FV+ ++ +A       R G  +H  + K G      V ++L  MY + G +  
Sbjct: 143 NGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVFVASSLADMYGKCGVLDD 202

Query: 206 GSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSS 265
             +VF+ I  +++V+WNAL   +      ++ +R+  +M  +G +P   T    L A ++
Sbjct: 203 ARKVFDYIPDRNAVAWNALMVGYVQNGMYEEAIRLLSEMRKEGIEPTRVTVSTCLSASAN 262

Query: 266 LSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
           +  +  GKQ HA  I + L+ ++++GTS+++ Y K G +E A + FD +  KD+  +  +
Sbjct: 263 MGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVVTWNLL 322

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH 385
           I+ Y Q G  E A+   + MR E +K +  TL++ ++  +    L  G+ +    ++ G 
Sbjct: 323 ISGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGL 382

Query: 386 LLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRM 445
             D+ +++  V MYAKCGSI +A+ VF  +  +D   WN ++  Y   GL  +AL  F  
Sbjct: 383 ESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYE 442

Query: 446 MLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAG 505
           M  E   P+ IT+ +++ +    G + E K+ F  ++   GI P +  +  M++ L + G
Sbjct: 443 MQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQS-SGIFPNLISWTTMMNGLVQNG 501

Query: 506 KFTEIENFI---TETKLTPNALVWENLLGAC 533
              E   F+    E+ L PNA      L AC
Sbjct: 502 CSEEAILFLRKMQESGLRPNAFTITVALSAC 532



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 141/571 (24%), Positives = 269/571 (47%), Gaps = 43/571 (7%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E+A+ +F  +   NV SW A++      G G+  +  F  M +       F +  V K 
Sbjct: 99  LEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEGALMGFVEMLENGIFPDNFVVPNVCKA 158

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                + + G+ VH    + G     F++ SL DMY KCG+ D+A KVF  I D + VAW
Sbjct: 159 CGALQWSRFGRGVHGYVAKAGLHHCVFVASSLADMYGKCGVLDDARKVFDYIPDRNAVAW 218

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A++    Q G  +EA ++ + MR+  ++P +  +++ + A+   G    G+  HA+   
Sbjct: 219 NALMVGYVQNGMYEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIV 278

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G E D ++G ++++ Y + G + Y   +F+ +  +D V+WN L S +      ++ + +
Sbjct: 279 NGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVVTWNLLISGYVQQGLVEEAIYM 338

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
              M  +  K +  T   ++ A +S  ++  GK++  + I+H L+ + V+ ++ VDMY K
Sbjct: 339 CQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLESDIVLASTAVDMYAK 398

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G + +A   FDS   KDL  +  ++++YA +G +  AL+ F +M+LE +  N  T    
Sbjct: 399 CGSIVNAKKVFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYEMQLESVPPNVITWNLI 458

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           +     ++ L NG++            +MF+                +  +F      + 
Sbjct: 459 I-----LSLLRNGQV--------NEAKEMFLQM-------------QSSGIFP-----NL 487

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SW  M+ G V++G  E+A+   R M + G  P+  T  V LSAC ++  +  G+     
Sbjct: 488 ISWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNAFTITVALSACVNLASLHFGRSIHGY 547

Query: 481 I--KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           I   + Y  + +I+    ++D+  + G   + E  +  +KL     ++  ++ A + +G 
Sbjct: 548 IIRNQQYSFSASIE--TSLVDMYAKCGDINKAER-VFGSKLCSELPLYNAMISAYALYGK 604

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISAT 569
           +        + + L   +E   V P +I+ T
Sbjct: 605 V-------REAITLYRSLEDGGVKPDNITIT 628



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 171/370 (46%), Gaps = 40/370 (10%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ +F  M E +VV+WN L++GY + G  ++ +++   M+    KF   +LST++  
Sbjct: 301 IEYAEMIFDGMIEKDVVTWNLLISGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSA 360

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             ++  +K G+ +    IR G   D  L+ + VDMY+KCG   NA KVF      D++ W
Sbjct: 361 ATSTQNLKLGKEIQCYCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILW 420

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +++     G   EA ++F  M+  SV PN                             
Sbjct: 421 NTLLSAYADSGLSGEALRLFYEMQLESVPPN----------------------------- 451

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ----DSVSWNALFSRFQDYESPDQ 236
                  +  N ++   + NG+V+    +F  +       + +SW  + +        ++
Sbjct: 452 ------VITWNLIILSLLRNGQVNEAKEMFLQMQSSGIFPNLISWTTMMNGLVQNGCSEE 505

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKH-SLDGNHVVGTSLV 295
            +    +M   G +PN  T  V L AC +L+ + FG+ +H + I++     +  + TSLV
Sbjct: 506 AILFLRKMQESGLRPNAFTITVALSACVNLASLHFGRSIHGYIIRNQQYSFSASIETSLV 565

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
           DMY K G +  A   F S    +L  Y A+I++YA  G+   A+  +R +   G+K +  
Sbjct: 566 DMYAKCGDINKAERVFGSKLCSELPLYNAMISAYALYGKVREAITLYRSLEDGGVKPDNI 625

Query: 356 TLASCLNGCS 365
           T+ S L+ C+
Sbjct: 626 TITSLLSACN 635



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 96/215 (44%), Gaps = 10/215 (4%)

Query: 321 AYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIA 380
           +Y   ++S  + GE   AL    +M    I+         L GC     L  G+ +H+  
Sbjct: 13  SYFHRVSSLCKNGEIREALSLVTEMDYRNIRIGPEIYGEILQGCVYERDLCTGQQIHAQI 72

Query: 381 VKTG--HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEK 438
           +K G  +  + ++ T LV  YAKC +++ A+ +F    +R+  SW  +IG   + GLGE 
Sbjct: 73  LKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEG 132

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMI 498
           AL  F  ML+ G  PD      V  AC  +     G+     + K  G+   +   + + 
Sbjct: 133 ALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKA-GLHHCVFVASSLA 191

Query: 499 DILGRAGKFTE---IENFITETKLTPNALVWENLL 530
           D+ G+ G   +   + ++I +     NA+ W  L+
Sbjct: 192 DMYGKCGVLDDARKVFDYIPDR----NAVAWNALM 222


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 197/641 (30%), Positives = 299/641 (46%), Gaps = 111/641 (17%)

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA---------- 119
            + VHA  I  G          L++MY K      A ++F  I +PD +A          
Sbjct: 32  ARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITAYCA 91

Query: 120 -----------------------WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLT 156
                                  + A+IT     G    A ++F  MR    +P+ F  T
Sbjct: 92  LGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFT 151

Query: 157 SLVRATT--ETGDQRCGESIHAVICKYGF------------------------------- 183
           S++ A       +Q+CG+ +H  + K G                                
Sbjct: 152 SVLSALVLFVGNEQQCGQ-MHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVS 210

Query: 184 ---------ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
                    + D L    +++ Y+ N  ++    VFEA+      +WNA+ S +      
Sbjct: 211 ARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCF 270

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV----V 290
            + L +  +M   G + +  T+  I+ AC+++     GKQ+HA+ +K+ L+ NH     V
Sbjct: 271 QEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSV 330

Query: 291 GTSLVDMYDK-------------------------------SGCLEDAGVAFDSLANKDL 319
             +L+ +Y K                               +G +E+A   F+ +  K+L
Sbjct: 331 SNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNL 390

Query: 320 FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSI 379
              T +I+  AQ G  +  LK F++MRL+G +  +F  A  L  CS +  L NGR LH+ 
Sbjct: 391 LTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQ 450

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
            V  G+   + V  A+++MYAKCG ++ AE+VF      D  SWN MI    +HG G KA
Sbjct: 451 LVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKA 510

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMID 499
           +E F  ML EG  PD ITF+ VL+ACSH GL+E+G+ +F+S+ + YGITP   H+A M+D
Sbjct: 511 IELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVD 570

Query: 500 ILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESN 559
           +  RAG F+     I      P A VWE LL  C  HGN++L  + AE+L +L P+ +  
Sbjct: 571 LFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGT 630

Query: 560 YVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           YV  S+I A  GRWND + VR L+  Q ++KEP+CSWIEV+
Sbjct: 631 YVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVE 671



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 131/536 (24%), Positives = 229/536 (42%), Gaps = 96/536 (17%)

Query: 1   MELAKRVFKSMPEL--NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVL 58
           +EL + +F   P    + V +NA++ GYA +GDG   + LF +M+  + +   F+ ++VL
Sbjct: 95  LELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVL 154

Query: 59  KGFA--NSGYIKAGQVVHAMAIR--LGCALDKFLSCSLVDMYSK--------CGLADNAL 106
                      + GQ+ H   ++  +GC     L+ +L+ +Y K        C    +A 
Sbjct: 155 SALVLFVGNEQQCGQM-HCAVVKTGMGCVSSSVLN-ALLSVYVKRASELGIPCSAMVSAR 212

Query: 107 KVFYRIKDPDVV-------------------------------AWGAIITCLDQQGCCQE 135
           K+F  +   D +                               AW A+I+     GC QE
Sbjct: 213 KLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQE 272

Query: 136 AAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD----TLVGN 191
           A  +   MR   ++ +    T+++ A    G  + G+ +HA I K     +      V N
Sbjct: 273 ALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSN 332

Query: 192 ALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY-----------ESP------ 234
           AL+++Y +N +V    ++F A+  ++ ++WNA+ S + +            E P      
Sbjct: 333 ALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLT 392

Query: 235 --------------DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTI 280
                         D+GL++F QM L GF+P    F   L ACS L  +  G+QLHA  +
Sbjct: 393 LTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLV 452

Query: 281 KHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALK 340
               + +  VG +++ MY K G +E A   F ++ + DL ++ ++I +  Q G    A++
Sbjct: 453 HLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIE 512

Query: 341 CFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR-----LLHSIAVKTGHLLDMFVSTAL 395
            F +M  EG+  +  T  + L  CS    +  GR     +L S  +      D +    +
Sbjct: 513 LFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCE--DHYAR--M 568

Query: 396 VAMYAKCGSIDDAEAVFKGSALRDTAS-WNMMIGGYVKHG---LG-EKALEAFRMM 446
           V ++ + G    A  V      +  A  W  ++ G   HG   LG E A + F++M
Sbjct: 569 VDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLM 624



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 115/302 (38%), Gaps = 80/302 (26%)

Query: 260 LKACSSLSDVGF--GKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK 317
           L+ CS      F   + +HAH I             L++MY KS  +  A   F+ + N 
Sbjct: 18  LQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEEIPNP 77

Query: 318 DLFAYTAIITS---------------------------------YAQAGEAEMALKCFRK 344
           D  A T +IT+                                 YA  G+   AL+ FR 
Sbjct: 78  DAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRA 137

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGR---LLHSIAVKTGH----------LLDMFV 391
           MR +  + ++FT  S L+    V  + N +    +H   VKTG           LL ++V
Sbjct: 138 MRRDDFRPDDFTFTSVLSAL--VLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYV 195

Query: 392 S------------------------------TALVAMYAKCGSIDDAEAVFKGSALRDTA 421
                                          T ++  Y +   ++ A  VF+       A
Sbjct: 196 KRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGA 255

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           +WN MI GYV  G  ++AL   R M   G   D+IT+  ++SAC+++G  + GK+  + I
Sbjct: 256 AWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYI 315

Query: 482 KK 483
            K
Sbjct: 316 LK 317



 Score = 47.0 bits (110), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 9/167 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ VF +MP +++VSWN+++    + G G K + LF  M        + +  TVL  
Sbjct: 476 VEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTA 535

Query: 61  FANSGYIKAGQ-VVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD-PDVV 118
            +++G ++ G+   ++M    G    +     +VD++ + G+   A  V   +   P   
Sbjct: 536 CSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAP 595

Query: 119 AWGAIITCLDQQGC----CQEAAKIFNLMRESSVKPNQFVLTSLVRA 161
            W A++      G      + A ++F LM ++      +VL S + A
Sbjct: 596 VWEALLAGCRIHGNMDLGIEAAEQLFKLMPQND---GTYVLLSNIYA 639


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 186/555 (33%), Positives = 286/555 (51%), Gaps = 9/555 (1%)

Query: 49  FSKFSLSTVLKGFANSGYIKAGQVVHAMAIR-LGCALDKFLSCSLVDMYSKCGLADNALK 107
            S  SL+++++   ++   + G+  HA  I+ L   L  F+   LV+MYSK    ++A  
Sbjct: 4   LSPNSLASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQL 63

Query: 108 VFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD 167
           +     +  VV W A+I    Q G    A   F+ MR  S++PN F      +A+     
Sbjct: 64  LLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRS 123

Query: 168 QRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR 227
              G+ +HA+  K G  SD  VG +   MY + G      ++F+ +  ++  +WNA  S 
Sbjct: 124 PLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSN 183

Query: 228 FQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGN 287
                  D  L  F +   +G++PN+ TF   L AC+  S +  G+QLH   ++   + +
Sbjct: 184 SVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEAD 243

Query: 288 HVVGTSLVDMYDKS---GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRK 344
             V   L+D Y K    GC E   + F  ++  +  ++ ++I SY Q  E E A   F +
Sbjct: 244 VSVANGLIDFYGKCHQVGCSE---IIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLR 300

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404
            R EGI+  +F ++S L+ C+ ++ L  G+ +H++AVK   + ++FV +ALV MY KCGS
Sbjct: 301 ARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGS 360

Query: 405 IDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML--DEGYVPDEITFVVVL 462
           I+DAE  F     R+  +WN MIGGY   G  + A+  F  M        P+ +TFV VL
Sbjct: 361 IEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVL 420

Query: 463 SACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPN 522
           SACS  G +  G + F S++  YGI P  +H+AC++D+LGRAG   +   FI +  + P 
Sbjct: 421 SACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPT 480

Query: 523 ALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRAL 582
             VW  LLGA    G  EL +  A+ L EL+P    N+V  S++ A  GRW + + VR  
Sbjct: 481 VSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKE 540

Query: 583 LSSQGIKKEPSCSWI 597
           +   GIKK   CSWI
Sbjct: 541 MKDVGIKKGAGCSWI 555



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/438 (26%), Positives = 203/438 (46%), Gaps = 4/438 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +    P  +VV+W AL+ G  ++G     +  F +M+    + + F+     K   +
Sbjct: 61  AQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGS 120

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G+ VHA+A++ G   D F+ CS  DMYSK GL + A K+F  + + ++  W A 
Sbjct: 121 LRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAY 180

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           ++    +G   +A   F   R    +PN     + + A       R G  +H  + + GF
Sbjct: 181 LSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGF 240

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E+D  V N L+  Y +  +V     +F  I+  + VSW ++   +   +  ++   +F +
Sbjct: 241 EADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLR 300

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
              +G +P       +L AC+ LS +  GK +H   +K  + GN  VG++LVDMY K G 
Sbjct: 301 ARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGS 360

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL--EGIKSNEFTLASCL 361
           +EDA  AFD +  ++L  + A+I  YA  G+A+MA+  F +M      +  N  T    L
Sbjct: 361 IEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVL 420

Query: 362 NGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           + CS   ++  G  +  S+  + G          +V +  + G ++ A    K   +R T
Sbjct: 421 SACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPT 480

Query: 421 AS-WNMMIGGYVKHGLGE 437
            S W  ++G     G  E
Sbjct: 481 VSVWGALLGASKMFGKSE 498



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 145/309 (46%), Gaps = 3/309 (0%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E A+++F  MPE N+ +WNA L+     G     +  F   +    + +  +    L   
Sbjct: 160 EEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNAC 219

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           A + Y++ G+ +H   ++ G   D  ++  L+D Y KC     +  +F  I  P+ V+W 
Sbjct: 220 AGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWC 279

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           ++I    Q    ++A  +F   R+  ++P  F+++S++ A         G+S+H +  K 
Sbjct: 280 SMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKA 339

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
               +  VG+ALV MY + G +    R F+ +  ++ V+WNA+   +      D  + +F
Sbjct: 340 CVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLF 399

Query: 242 YQMLLKGFK--PNMCTFIVILKACSSLSDVGFGKQL-HAHTIKHSLDGNHVVGTSLVDMY 298
            +M     +  PN  TF+ +L ACS    V  G ++  +   ++ ++        +VD+ 
Sbjct: 400 DEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLL 459

Query: 299 DKSGCLEDA 307
            ++G +E A
Sbjct: 460 GRAGMVEQA 468



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 4/128 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSK--FSLSTVL 58
           +E A+R F  MPE N+V+WNA++ GYA  G     + LF  M     + +    +   VL
Sbjct: 361 IEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVL 420

Query: 59  KGFANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPD 116
              + +G +  G ++  +M  R G          +VD+  + G+ + A +   ++   P 
Sbjct: 421 SACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPT 480

Query: 117 VVAWGAII 124
           V  WGA++
Sbjct: 481 VSVWGALL 488


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 195/658 (29%), Positives = 321/658 (48%), Gaps = 62/658 (9%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           + A  V + +     V WN L+  + + G     +++ C M     +   F+L  VLK  
Sbjct: 68  DYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTLPHVLKAC 127

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD---PDVV 118
                 + G   H +    G   + F+  +LV MYS+CG  + A  +F  I      DV+
Sbjct: 128 GELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVI 187

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLM------RESSVKPNQFVLTSLVRATTETGDQRCGE 172
           +W +I++   +      A  +F+ M      + ++ + +   + +++ A          +
Sbjct: 188 SWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTK 247

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNAL-------- 224
            +H    + G   D  VGNAL+  Y + G +    +VF  +  +D VSWNA+        
Sbjct: 248 EVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSG 307

Query: 225 -----FSRFQDYESPD----------------------QGLRIFYQMLLKGFKPNMCTFI 257
                F  F++    +                      + L +F QM+  G  PN  T I
Sbjct: 308 NFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTII 367

Query: 258 VILKACSSLSDVGFGKQLHAHTIKHSL----------DGNHVVGTSLVDMYDKSGCLEDA 307
            +L AC+SL     G ++HA+++K+ L          D + +V  +L+DMY K    + A
Sbjct: 368 SVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAA 427

Query: 308 GVAFD--SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE--GIKSNEFTLASCLNG 363
              FD   L  +++  +T +I  +AQ G++  ALK F +M  E  G+  N +T++  L  
Sbjct: 428 RSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMA 487

Query: 364 CSPVATLANGRLLHSIAVKTGHLLD---MFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           C+ +A +  G+ +H+  ++  H  D    FV+  L+ MY+KCG +D A  VF   + +  
Sbjct: 488 CAHLAAIRIGKQIHAYVLRH-HQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSA 546

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SW  M+ GY  HG G +AL+ F  M   G+VPD+ITF+VVL ACSH G++++G  +F S
Sbjct: 547 ISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDS 606

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +   YG+TP  +H+A  ID+L R G+  +    + +  + P A+VW  LL AC  H N+E
Sbjct: 607 MSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVE 666

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           L E    KL+E+  + + +Y   S+I AT GRW D + +R L+   GIKK P CSW++
Sbjct: 667 LAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQ 724



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 141/541 (26%), Positives = 244/541 (45%), Gaps = 67/541 (12%)

Query: 86  KFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRE 145
           + L   +V  Y  CG  D AL V  R+     V W  +I    +QG    A  +   M  
Sbjct: 51  RSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLR 110

Query: 146 SSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSY 205
           +  + + F L  +++A  E    RCG + H +IC  GFES+  + NALV+MY   G +  
Sbjct: 111 AGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEE 170

Query: 206 GSRVFEAIAHQ---DSVSWNALFSRFQDYESPDQGLRIFYQM-LLKGFKP-----NMCTF 256
            S +F+ I  +   D +SWN++ S      +    L +F +M L+   KP     ++ + 
Sbjct: 171 ASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISI 230

Query: 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
           + IL AC SL  V   K++H + I++    +  VG +L+D Y K G +E+A   F+ +  
Sbjct: 231 VNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEF 290

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK------------------------- 351
           KD+ ++ A++  Y+Q+G  + A + F+ MR E I                          
Sbjct: 291 KDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNV 350

Query: 352 ----------SNEFTLASCLNGCSPVATLANGRLLHSIAVKT----------GHLLDMFV 391
                      N  T+ S L+ C+ +   + G  +H+ ++K           G   D+ V
Sbjct: 351 FRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMV 410

Query: 392 STALVAMYAKCGSIDDAEAVFKGSAL--RDTASWNMMIGGYVKHGLGEKALEAFRMMLDE 449
             AL+ MY+KC S   A ++F    L  R+  +W +MIGG+ ++G    AL+ F  M+ E
Sbjct: 411 YNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISE 470

Query: 450 GY--VPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFA-CMIDILGRAGK 506
            Y   P+  T   +L AC+H+  I  GK+  + + + +    +    A C+I++  + G 
Sbjct: 471 PYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGD 530

Query: 507 FTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDI 566
             +    + ++    +A+ W +++     HG          + L++  KM      P DI
Sbjct: 531 -VDTARHVFDSMSQKSAISWTSMMTGYGMHGR-------GSEALDIFDKMRKAGFVPDDI 582

Query: 567 S 567
           +
Sbjct: 583 T 583



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 131/510 (25%), Positives = 217/510 (42%), Gaps = 62/510 (12%)

Query: 1   MELAKRVFKSMPEL---NVVSWNALLNGYAESGDGQKVMHLFCSM------KDMEKKFSK 51
           +E A  +F  + +    +V+SWN++++ + +S +    + LF  M      K   ++   
Sbjct: 168 LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 227

Query: 52  FSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYR 111
            S+  +L    +   +   + VH  AIR G  LD F+  +L+D Y+KCGL +NA+KVF  
Sbjct: 228 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNM 287

Query: 112 IKDPDVVAWG-----------------------------------AIITCLDQQGCCQEA 136
           ++  DVV+W                                    A+I    Q+GC  EA
Sbjct: 288 MEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEA 347

Query: 137 AKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY----------GFESD 186
             +F  M  S   PN   + S++ A    G    G  IHA   K           G + D
Sbjct: 348 LNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDED 407

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIA--HQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
            +V NAL+ MY +         +F+ I    ++ V+W  +      Y   +  L++F +M
Sbjct: 408 LMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEM 467

Query: 245 LLK--GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL--DGNHVVGTSLVDMYDK 300
           + +  G  PN  T   IL AC+ L+ +  GKQ+HA+ ++H       + V   L++MY K
Sbjct: 468 ISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSK 527

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G ++ A   FDS++ K   ++T+++T Y   G    AL  F KMR  G   ++ T    
Sbjct: 528 CGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVV 587

Query: 361 LNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
           L  CS    +  G     S++   G           + + A+ G +D A    K   +  
Sbjct: 588 LYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEP 647

Query: 420 TA-SWNMMIGGYVKHGLGEKALEAFRMMLD 448
           TA  W  ++     H   E A  A   +++
Sbjct: 648 TAVVWVALLSACRVHSNVELAEHALNKLVE 677



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 106/422 (25%), Positives = 178/422 (42%), Gaps = 58/422 (13%)

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F S   +G  +V+ Y+  G   Y   V E +    +V WN L          D  + +  
Sbjct: 47  FISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSC 106

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +ML  G + +  T   +LKAC  L     G   H     +  + N  +  +LV MY + G
Sbjct: 107 RMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCG 166

Query: 303 CLEDAGVAFDSLANK---DLFAYTAIITSYAQAGEAEMALKCFRKMRL------EGIKSN 353
            LE+A + FD +  +   D+ ++ +I++++ ++  A  AL  F KM L         +S+
Sbjct: 167 SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSD 226

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
             ++ + L  C  +  +   + +H  A++ G  LD+FV  AL+  YAKCG +++A  VF 
Sbjct: 227 IISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFN 286

Query: 414 GSALRDTASWNMM-----------------------------------IGGYVKHGLGEK 438
               +D  SWN M                                   I GY + G   +
Sbjct: 287 MMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHE 346

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIY--------GITP 489
           AL  FR M+  G +P+ +T + VLSAC+ +G   +G + H  S+K           G   
Sbjct: 347 ALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDE 406

Query: 490 TIKHFACMIDILGRAGKFTEIENFITETKLTP-NALVWENLLGACSWHGNIELDEKDAEK 548
            +  +  +ID+  +   F    +   +  L   N + W  ++G  + +G    D  DA K
Sbjct: 407 DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYG----DSNDALK 462

Query: 549 LL 550
           L 
Sbjct: 463 LF 464



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 70/165 (42%), Gaps = 3/165 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+ VF SM + + +SW +++ GY   G G + + +F  M+         +   VL  
Sbjct: 531 VDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYA 590

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            ++ G +  G     +M+   G           +D+ ++ G  D A K    +  +P  V
Sbjct: 591 CSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAV 650

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPN-QFVLTSLVRAT 162
            W A+++        + A    N + E + + +  + L S + AT
Sbjct: 651 VWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYAT 695


>gi|297805814|ref|XP_002870791.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316627|gb|EFH47050.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 674

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 181/602 (30%), Positives = 300/602 (49%), Gaps = 6/602 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM--KDMEKKFSKFSLSTVLKGF 61
           A+++F  MP+ +++S+N ++  Y   G     +++F  M  + ++     ++   V K  
Sbjct: 68  ARKLFDEMPQSSLLSYNIVIRMYVRDGLYHDAINVFIRMVSEGIKCVPDGYTYPFVAKAA 127

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
                I  G V+H   +R    +DK++  +L+ MY   G  + A  VF  +K+ DV++W 
Sbjct: 128 GELKSISLGLVIHGRILRSWFGMDKYVQNALLAMYMNFGRVEMARNVFDVMKNRDVISWN 187

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            +I+   + G   +A  +F+ M    V P+   + S++           G ++H ++ + 
Sbjct: 188 TMISGYYRNGYMNDALMMFDWMVNEGVDPDHATIVSMLPVCGHLKGLEMGRNVHKLVEEK 247

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
                  V NALV+MY++ GR+     VF  +  +D ++W  + + + +    +  L + 
Sbjct: 248 RLGDKIEVKNALVNMYLKCGRMDEARFVFGRMERRDVITWTCMINGYIEDGDVENALELC 307

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
             M  +G +PN  T   ++ AC     +  GK LH   I+  +  + ++ TSL+ MY K 
Sbjct: 308 RLMQFEGVRPNAVTIASLVSACGDALKLNDGKCLHGWAIRQKVCSDIIIETSLISMYAKC 367

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
             ++     F   +      ++AII    Q      AL  F++MR E ++ N  TL S L
Sbjct: 368 KHIDLCFRVFSGASRNHTGPWSAIIAGCVQNELVRDALDLFKRMRREDVEPNIATLNSLL 427

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG----SAL 417
              + +A L     +H    KTG +  +  +T LV +Y+KCG+++ A  +F G       
Sbjct: 428 PAYATLADLRQTMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKS 487

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           +D   W  +I GY  HG G  AL+ F  M+  G  P+EITF   L+ACSH GL+EEG   
Sbjct: 488 KDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTL 547

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           FS + + Y       H+ C++D+LGRAG+  E  N IT     P + +W  LL AC  H 
Sbjct: 548 FSFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTSTIWGALLAACVTHE 607

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           N++L E  A KL ELEP+   NYV  ++I A  GRW D   VR ++ + G++K+P  S I
Sbjct: 608 NVQLGEMAANKLFELEPENTGNYVLLANIYAALGRWKDMEKVRNMMENVGLRKKPGHSTI 667

Query: 598 EV 599
           E+
Sbjct: 668 EI 669



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 137/533 (25%), Positives = 246/533 (46%), Gaps = 14/533 (2%)

Query: 42  MKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGL 101
           ++  +   S     ++L  +A +  I   + +H   I  G      LS +L   Y+ CG 
Sbjct: 6   LRRAKNALSVKQYQSLLNHYAATQSISKTKALHCHVITGGRVSGHILS-TLSVTYALCGH 64

Query: 102 ADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK--PNQFVLTSLV 159
              A K+F  +    ++++  +I    + G   +A  +F  M    +K  P+ +    + 
Sbjct: 65  IAYARKLFDEMPQSSLLSYNIVIRMYVRDGLYHDAINVFIRMVSEGIKCVPDGYTYPFVA 124

Query: 160 RATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSV 219
           +A  E      G  IH  I +  F  D  V NAL++MYM  GRV     VF+ + ++D +
Sbjct: 125 KAAGELKSISLGLVIHGRILRSWFGMDKYVQNALLAMYMNFGRVEMARNVFDVMKNRDVI 184

Query: 220 SWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHT 279
           SWN + S +      +  L +F  M+ +G  P+  T + +L  C  L  +  G+ +H   
Sbjct: 185 SWNTMISGYYRNGYMNDALMMFDWMVNEGVDPDHATIVSMLPVCGHLKGLEMGRNVHKLV 244

Query: 280 IKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMAL 339
            +  L     V  +LV+MY K G +++A   F  +  +D+  +T +I  Y + G+ E AL
Sbjct: 245 EEKRLGDKIEVKNALVNMYLKCGRMDEARFVFGRMERRDVITWTCMINGYIEDGDVENAL 304

Query: 340 KCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMY 399
           +  R M+ EG++ N  T+AS ++ C     L +G+ LH  A++     D+ + T+L++MY
Sbjct: 305 ELCRLMQFEGVRPNAVTIASLVSACGDALKLNDGKCLHGWAIRQKVCSDIIIETSLISMY 364

Query: 400 AKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFV 459
           AKC  ID    VF G++   T  W+ +I G V++ L   AL+ F+ M  E   P+  T  
Sbjct: 365 AKCKHIDLCFRVFSGASRNHTGPWSAIIAGCVQNELVRDALDLFKRMRREDVEPNIATLN 424

Query: 460 VVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFT---EIENFITE 516
            +L A + +  + +       + K  G   ++     ++ +  + G      +I N I E
Sbjct: 425 SLLPAYATLADLRQTMNIHCYLTKT-GFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQE 483

Query: 517 TKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISAT 569
              + + ++W  L+     HG       D    L++  +M  + V P++I+ T
Sbjct: 484 KHKSKDVVLWGALISGYGMHG-------DGHNALQVFMEMVRSGVTPNEITFT 529



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 121/452 (26%), Positives = 212/452 (46%), Gaps = 17/452 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E+A+ VF  M   +V+SWN +++GY  +G     + +F  M +        ++ ++L  
Sbjct: 168 VEMARNVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNEGVDPDHATIVSMLPV 227

Query: 61  FANSGYIKAGQVVHAMA--IRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
             +   ++ G+ VH +    RLG  ++  +  +LV+MY KCG  D A  VF R++  DV+
Sbjct: 228 CGHLKGLEMGRNVHKLVEEKRLGDKIE--VKNALVNMYLKCGRMDEARFVFGRMERRDVI 285

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            W  +I    + G  + A ++  LM+   V+PN   + SLV A  +      G+ +H   
Sbjct: 286 TWTCMINGYIEDGDVENALELCRLMQFEGVRPNAVTIASLVSACGDALKLNDGKCLHGWA 345

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            +    SD ++  +L+SMY +   +    RVF   +   +  W+A+ +     E     L
Sbjct: 346 IRQKVCSDIIIETSLISMYAKCKHIDLCFRVFSGASRNHTGPWSAIIAGCVQNELVRDAL 405

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            +F +M  +  +PN+ T   +L A ++L+D+     +H +  K     +    T LV +Y
Sbjct: 406 DLFKRMRREDVEPNIATLNSLLPAYATLADLRQTMNIHCYLTKTGFMSSLDAATGLVHVY 465

Query: 299 DKSGCLEDAGVAFDSLA----NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
            K G LE A   F+ +     +KD+  + A+I+ Y   G+   AL+ F +M   G+  NE
Sbjct: 466 SKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNE 525

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS---TALVAMYAKCGSIDDAEAV 411
            T  S LN CS    +  G  L S  ++  H   +  S   T +V +  + G +D+A  +
Sbjct: 526 ITFTSALNACSHSGLVEEGLTLFSFMLE--HYKTLARSNHYTCIVDLLGRAGRLDEAYNL 583

Query: 412 FKGSALRDTAS-WNMMIGGYVKH---GLGEKA 439
                   T++ W  ++   V H    LGE A
Sbjct: 584 ITTIPFEPTSTIWGALLAACVTHENVQLGEMA 615


>gi|255572826|ref|XP_002527345.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533264|gb|EEF35017.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 687

 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 190/593 (32%), Positives = 299/593 (50%), Gaps = 12/593 (2%)

Query: 18  SWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMA 77
           S N  L+G  E     +     C +K+ EKK        +L+       +   QV+HA  
Sbjct: 42  SINTQLDGSLEPIKPLEFHEALCFIKE-EKKIEPSYYLPLLQECTKKNSVSEAQVIHAHI 100

Query: 78  IRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAA 137
           I+ G   D  +  SLV++Y+KCG   NA K+F  +   +VVAW A++T   Q      A 
Sbjct: 101 IKTGTHKDLAVMTSLVNVYAKCGAMGNARKIFDSLHRRNVVAWTALMTGYVQNSQPNIAI 160

Query: 138 KIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMY 197
            +F  M ES   P+ + L   + A +     + G+ +HA + KY  + D  +GNAL S+Y
Sbjct: 161 DVFQDMLESGTLPSNYTLGIALNACSAINSIKLGKQLHAFVIKYKLDYDPSIGNALCSLY 220

Query: 198 MENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFI 257
            + G +     VF++I  ++ +SW A+ S   +      GLR F +MLL+  KPN  T  
Sbjct: 221 SKLGSLDSSINVFQSIGEKNVISWTAVISACGENGKAAMGLRFFNEMLLEDIKPNEFTLT 280

Query: 258 VILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK 317
            +L  C     +  G+ +H+ +IK     N  +  S++ +Y K G +++A + F  + + 
Sbjct: 281 TVLSLCCVTLALVLGRLVHSLSIKLGYQYNLRITNSIMYLYLKCGHMDEAQILFHKMGST 340

Query: 318 DLFAYTAIITSYAQAGEAEM-----------ALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           +L  + A+I+ +AQA +              AL  F ++   G K + FTL+S L  CS 
Sbjct: 341 NLVTWNAMISGHAQAMDLAKDDFSAQRSGIEALSIFLELNRTGKKPDLFTLSSVLTVCSR 400

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           ++ L  G  LH+  +K+G+L D+ V TALV MY+KCGSI  A   F   + R   SW  M
Sbjct: 401 LSALGQGEQLHAQTIKSGYLSDVVVGTALVNMYSKCGSIGKASKAFVEMSTRTLISWTTM 460

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           I G  +HG  E+AL+ F  M   G  P++ITFV VL+AC H G+++E   +F  ++K Y 
Sbjct: 461 ITGLAQHGHSEQALQLFEDMRLAGVRPNQITFVGVLAACCHSGMVDEALGYFEMMQKEYR 520

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDA 546
           I P + H+ C+I +  +  +  E  + I +    P+  +W  L+  C   G  EL    A
Sbjct: 521 IKPVMDHYGCLIAMFVKLRRLDEAFDIINKMDFEPSEFIWSILIAGCRNLGKQELGFYAA 580

Query: 547 EKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           E+LL+L+ K    YV   ++  +  RW D S VR L+  + + K    SWI +
Sbjct: 581 EQLLKLKLKDTETYVTLLNMYISAKRWQDVSRVRKLMKEEKLGKFNDWSWITI 633



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 136/475 (28%), Positives = 235/475 (49%), Gaps = 18/475 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F S+   NVV+W AL+ GY ++      + +F  M +     S ++L   L   + 
Sbjct: 128 ARKIFDSLHRRNVVAWTALMTGYVQNSQPNIAIDVFQDMLESGTLPSNYTLGIALNACSA 187

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              IK G+ +HA  I+     D  +  +L  +YSK G  D+++ VF  I + +V++W A+
Sbjct: 188 INSIKLGKQLHAFVIKYKLDYDPSIGNALCSLYSKLGSLDSSINVFQSIGEKNVISWTAV 247

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   + G      + FN M    +KPN+F LT+++     T     G  +H++  K G+
Sbjct: 248 ISACGENGKAAMGLRFFNEMLLEDIKPNEFTLTTVLSLCCVTLALVLGRLVHSLSIKLGY 307

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS-----------RFQDYE 232
           + +  + N+++ +Y++ G +     +F  +   + V+WNA+ S            F    
Sbjct: 308 QYNLRITNSIMYLYLKCGHMDEAQILFHKMGSTNLVTWNAMISGHAQAMDLAKDDFSAQR 367

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
           S  + L IF ++   G KP++ T   +L  CS LS +G G+QLHA TIK     + VVGT
Sbjct: 368 SGIEALSIFLELNRTGKKPDLFTLSSVLTVCSRLSALGQGEQLHAQTIKSGYLSDVVVGT 427

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           +LV+MY K G +  A  AF  ++ + L ++T +IT  AQ G +E AL+ F  MRL G++ 
Sbjct: 428 ALVNMYSKCGSIGKASKAFVEMSTRTLISWTTMITGLAQHGHSEQALQLFEDMRLAGVRP 487

Query: 353 NEFTLASCLNGC--SPVATLANGRL-LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           N+ T    L  C  S +   A G   +     +   ++D +    L+AM+ K   +D+A 
Sbjct: 488 NQITFVGVLAACCHSGMVDEALGYFEMMQKEYRIKPVMDHY--GCLIAMFVKLRRLDEAF 545

Query: 410 AVFKGSALRDTA-SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
            +        +   W+++I G    G  E    A   +L +  + D  T+V +L+
Sbjct: 546 DIINKMDFEPSEFIWSILIAGCRNLGKQELGFYAAEQLL-KLKLKDTETYVTLLN 599



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 93/177 (52%), Gaps = 11/177 (6%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGD-----------GQKVMHLFCSMKDMEKKF 49
           M+ A+ +F  M   N+V+WNA+++G+A++ D           G + + +F  +    KK 
Sbjct: 327 MDEAQILFHKMGSTNLVTWNAMISGHAQAMDLAKDDFSAQRSGIEALSIFLELNRTGKKP 386

Query: 50  SKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF 109
             F+LS+VL   +    +  G+ +HA  I+ G   D  +  +LV+MYSKCG    A K F
Sbjct: 387 DLFTLSSVLTVCSRLSALGQGEQLHAQTIKSGYLSDVVVGTALVNMYSKCGSIGKASKAF 446

Query: 110 YRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
             +    +++W  +IT L Q G  ++A ++F  MR + V+PNQ     ++ A   +G
Sbjct: 447 VEMSTRTLISWTTMITGLAQHGHSEQALQLFEDMRLAGVRPNQITFVGVLAACCHSG 503


>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 676

 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 176/547 (32%), Positives = 293/547 (53%), Gaps = 3/547 (0%)

Query: 55  STVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
           ++++  F N   +   + +H   ++ G +L  F    L+D Y KC +   A K+F  + +
Sbjct: 5   TSLIAQFTNKKSLTTLKSLHTHILKSG-SLFSFFGHKLIDGYIKCSVITEARKLFDEMPN 63

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
             +V W ++I+    +G  +EA ++++ M    V P+ +  +++ +A +E G  R G+  
Sbjct: 64  RHIVTWNSMISSHVSRGKTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQKA 123

Query: 175 HAVICKYGFE-SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           H +    GFE SD  V   +V MY + G++     VF+ +  +D V + AL   +     
Sbjct: 124 HGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQRGL 183

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
             + L +F  M+    KPN  T   +L +C +L D+  GK +H   +K  L+      TS
Sbjct: 184 DGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGLESVVASQTS 243

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           L+ MY K   +ED+   F+SLA      +T+ I    Q G  E+AL  FR+M    I  N
Sbjct: 244 LLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMFREMIRCSISPN 303

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
            FT +S L+ CS +A L  G  +H++ VK G   + +V  AL+ +Y KCG+++ A +VF+
Sbjct: 304 HFTFSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKYVDAALIHLYGKCGNVEKARSVFE 363

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
                D  S N MI  Y ++G G +ALE F  M   G+ P+ +TF+ +L AC++ GL+EE
Sbjct: 364 SLTELDVVSINTMIYAYAQNGFGHEALELFERMKKLGHKPNVVTFISILLACNNAGLVEE 423

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           G + FS I+  + I  T  H+ CMID+LGRA +F E    I E K  P+ + W  LL AC
Sbjct: 424 GCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFEEAAMLIEEGK-NPDVIQWRTLLNAC 482

Query: 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPS 593
             HG +E+ EK  +K+L+  P+    ++  ++I A+ G+W++   +++      +KK P+
Sbjct: 483 KIHGEVEMAEKFMKKMLDQAPRDGGTHILLTNIYASAGKWDNVIEMKSAGRDLRLKKTPA 542

Query: 594 CSWIEVD 600
            SW+++D
Sbjct: 543 MSWVDID 549



 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 132/450 (29%), Positives = 231/450 (51%), Gaps = 4/450 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F  MP  ++V+WN++++ +   G  ++ + L+ +M         ++ S + K F+ 
Sbjct: 54  ARKLFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSE 113

Query: 64  SGYIKAGQVVHAMAIRLGCAL-DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
            G  + GQ  H +A+ LG  + D F++  +VDMY+K G   +A  VF R+ D DVV + A
Sbjct: 114 MGVSREGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTA 173

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I   +Q+G   EA ++F  M  S +KPN++ L S++ +    GD   G+ IH ++ K G
Sbjct: 174 LIVGYNQRGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSG 233

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            ES      +L++MY +   V    +VF ++A+   V+W +           +  L +F 
Sbjct: 234 LESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMFR 293

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M+     PN  TF  IL ACSSL+ +  G+Q+HA T+K  +DGN  V  +L+ +Y K G
Sbjct: 294 EMIRCSISPNHFTFSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKYVDAALIHLYGKCG 353

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            +E A   F+SL   D+ +   +I +YAQ G    AL+ F +M+  G K N  T  S L 
Sbjct: 354 NVEKARSVFESLTELDVVSINTMIYAYAQNGFGHEALELFERMKKLGHKPNVVTFISILL 413

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVS--TALVAMYAKCGSIDDAEAVFKGSALRDT 420
            C+    +  G  + S+ ++  H +++     T ++ +  +    ++A  + +     D 
Sbjct: 414 ACNNAGLVEEGCQIFSL-IRNNHSIELTRDHYTCMIDLLGRAKRFEEAAMLIEEGKNPDV 472

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
             W  ++     HG  E A +  + MLD+ 
Sbjct: 473 IQWRTLLNACKIHGEVEMAEKFMKKMLDQA 502



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 173/346 (50%), Gaps = 1/346 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A+ VF  + + +VV + AL+ GY + G   + + +F  M     K ++++L++VL  
Sbjct: 153 MKDARFVFDRVLDKDVVLFTALIVGYNQRGLDGEALEVFEDMVGSRIKPNEYTLASVLVS 212

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             N G +  G+++H + ++ G         SL+ MYSKC + ++++KVF  +     V W
Sbjct: 213 CGNLGDLVNGKLIHGLVVKSGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTW 272

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            + I  L Q G  + A  +F  M   S+ PN F  +S++ A +       GE IHAV  K
Sbjct: 273 TSFIVGLVQNGREEIALSMFREMIRCSISPNHFTFSSILHACSSLAMLEAGEQIHAVTVK 332

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G + +  V  AL+ +Y + G V     VFE++   D VS N +   +       + L +
Sbjct: 333 LGVDGNKYVDAALIHLYGKCGNVEKARSVFESLTELDVVSINTMIYAYAQNGFGHEALEL 392

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTI-KHSLDGNHVVGTSLVDMYD 299
           F +M   G KPN+ TFI IL AC++   V  G Q+ +     HS++      T ++D+  
Sbjct: 393 FERMKKLGHKPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLG 452

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM 345
           ++   E+A +  +   N D+  +  ++ +    GE EMA K  +KM
Sbjct: 453 RAKRFEEAAMLIEEGKNPDVIQWRTLLNACKIHGEVEMAEKFMKKM 498


>gi|242033481|ref|XP_002464135.1| hypothetical protein SORBIDRAFT_01g012973 [Sorghum bicolor]
 gi|241917989|gb|EER91133.1| hypothetical protein SORBIDRAFT_01g012973 [Sorghum bicolor]
          Length = 576

 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 178/529 (33%), Positives = 281/529 (53%), Gaps = 15/529 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + LA++VF  +P  +  ++NAL+  Y+  G     + L+ SM       +K++   VLK 
Sbjct: 49  LALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKA 108

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    + AG+ +HA A  +G   D F+S +L+D+Y +C     A  VF ++   DVVAW
Sbjct: 109 CSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAW 168

Query: 121 GAIITCLDQQGCCQEA-AKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            A++      G    A A + ++     ++PN   L SL+    + G    G S+HA  C
Sbjct: 169 NAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAY-C 227

Query: 180 KYGF----ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD 235
              +    E   L+G AL+ MY +   + Y  RVF  +  ++ V+W+AL   F   +   
Sbjct: 228 LRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMT 287

Query: 236 QGLRIFYQMLLKGFKPNMC-----TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
           +   +F  ML++G    MC     +    L+ C+SL+D+  G QLHA   K  +  +   
Sbjct: 288 EAFNLFKDMLVEG----MCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTA 343

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
           G SL+ MY K+G + +A + FD +A KD  +Y A+++ Y Q G+AE A   F+KM+   +
Sbjct: 344 GNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNV 403

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
           + +  T+ S +  CS +A L +GR  H   +  G  L+  +  +L+ MYAKCG ID +  
Sbjct: 404 QPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQ 463

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           VF     RD  SWN MI GY  HGLG++A   F  M ++G+ PD++TF+ +++ACSH GL
Sbjct: 464 VFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGL 523

Query: 471 IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKL 519
           + EGK  F ++   YGI P ++H+ CM+D+L R G   E   FI    L
Sbjct: 524 VTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPL 572



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 154/331 (46%), Gaps = 12/331 (3%)

Query: 197 YMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP-DQGLRIFYQMLLKGFKPNMCT 255
           ++  G+++   +VF+ I   D+ ++NAL  R   +  P    + ++  ML     PN  T
Sbjct: 43  HIARGQLALARQVFDRIPAPDARAYNALI-RAYSWRGPFHAAIDLYRSMLYFRVPPNKYT 101

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
           F  +LKACS+L+D+  G+ +HAH     L  +  V T+L+D+Y +      A   F  + 
Sbjct: 102 FPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMP 161

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE-GIKSNEFTLASCLNGCSPVATLANGR 374
            +D+ A+ A++  YA  G    A+     M+   G++ N  TL S L   +    L  G 
Sbjct: 162 MRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGT 221

Query: 375 LLHSIAVKTGHLLD-----MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
            +H+  ++    LD     + + TAL+ MYAKC  +  A  VF G  +R+  +W+ +IGG
Sbjct: 222 SVHAYCLRA--YLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGG 279

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVV-VLSACSHMGLIEEGKKHFSSIKKIYGIT 488
           +V      +A   F+ ML EG      T V   L  C+ +  +  G +  + + K  GI 
Sbjct: 280 FVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAK-SGIH 338

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKL 519
             +     ++ +  +AG   E      E  +
Sbjct: 339 ADLTAGNSLLSMYAKAGLINEATMLFDEIAI 369


>gi|449521571|ref|XP_004167803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 817

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 194/609 (31%), Positives = 314/609 (51%), Gaps = 11/609 (1%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           +L ++VF +M +  VV+WN L+  Y  +    + +  F  M  +  K S  S   V   F
Sbjct: 161 DLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAF 220

Query: 62  ANSGYIKAGQVVHAMAIRLGCAL--DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           ++ G  K   VVH M ++LG     D ++  S + MY++ G  + A KVF    + +   
Sbjct: 221 SSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEV 280

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESS-VKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           W  +I+   Q     E  ++F    ES     ++  L S + A +        E +HA +
Sbjct: 281 WNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFV 340

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K    +   V NAL++MY     +    ++F+ +  +D VSWN + S F      D+ L
Sbjct: 341 IKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEAL 400

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            +FY+M  +    +  T   +L A S L +   GKQ H + +++ +    +  + L+DMY
Sbjct: 401 MLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGM-DSYLIDMY 459

Query: 299 DKSGCLEDAGVAFD-SLAN-KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
            KSG +E A   F+ S ++ +D   + ++++ Y Q G  + A    R+M  + +  N  T
Sbjct: 460 AKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVT 519

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
           LAS L  C+P   +  G+ LH  +++     ++FV+TAL+ MY+K GSI  AE VF  + 
Sbjct: 520 LASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKAN 579

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            +   +++ MI GY +HG+GE AL  F  M   G  PD +T V VLSACS+ GL++EG +
Sbjct: 580 EKSIVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQ 639

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNAL-VWENLLGACSW 535
            F S++ +Y I P+ +HF C+ D+LGRAG+  +   F+       N + +W +LL AC  
Sbjct: 640 IFESMRTVYNIQPSTEHFCCVADMLGRAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRI 699

Query: 536 HGNIELDEKDAEKLLELEPKMESN---YVFPSDISATQGRWNDFSGVRALLSSQGIKKEP 592
           H   EL +  A+KLLE+E K+      +V  S+I A +  W +   VR  +  +G+KKE 
Sbjct: 700 HKQFELGKLVAKKLLEME-KINGKTGYHVLLSNIYAEERNWENVDIVRKQMRERGLKKET 758

Query: 593 SCSWIEVDG 601
             SWIE+ G
Sbjct: 759 GSSWIEIAG 767



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 139/537 (25%), Positives = 264/537 (49%), Gaps = 24/537 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDM--EKKFSKFSLSTVL 58
           + LA+++F ++P  + V WN ++ G   +    + +  + +MK    + K   ++ S+VL
Sbjct: 44  LHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSSVL 103

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLA-------------DNA 105
           K  A++  +  G+ VHA  +R      + +  SL++MYS C                D  
Sbjct: 104 KACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLV 163

Query: 106 LKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTET 165
            KVF  ++   VVAW  +I    +     EA K F++M +  +KP+     ++  A +  
Sbjct: 164 RKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSL 223

Query: 166 GDQRCGESIHAVICKYGFE--SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNA 223
           GD +    +H ++ K G E  +D  V ++ + MY E G + +  +VF+    +++  WN 
Sbjct: 224 GDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNT 283

Query: 224 LFSRFQDYESPDQGLRIFYQML-LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKH 282
           + S F       +G+++F+Q +  +    +  T +  + A S L      +QLHA  IK+
Sbjct: 284 MISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKN 343

Query: 283 SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCF 342
                  V  +L+ MY +   ++ +   FD++  KD+ ++  +I+++ Q G  + AL  F
Sbjct: 344 VAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLF 403

Query: 343 RKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC 402
            +M+ + +  +  T+ + L+  S +     G+  H   ++ G   +  + + L+ MYAK 
Sbjct: 404 YEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEG-MDSYLIDMYAKS 462

Query: 403 GSIDDAEAVFKG--SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVV 460
           G I+ A+ VF+   S  RD A+WN M+ GY ++GL ++A    R MLD+  +P+ +T   
Sbjct: 463 GLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLAS 522

Query: 461 VLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE 516
           +L AC+  G I+ GK+ H  SI+    +   +     +ID+  ++G     EN  ++
Sbjct: 523 ILPACNPSGYIDWGKQLHGFSIRN--DLDQNVFVATALIDMYSKSGSIAHAENVFSK 577



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 144/310 (46%), Gaps = 22/310 (7%)

Query: 199 ENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM----C 254
           + G++    ++F+A+    +V WN +         PD+ L  +  M  K   P +     
Sbjct: 40  QEGQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNM--KSSSPQVKCDSY 97

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG------ 308
           T+  +LKAC+   ++  GK +HAH ++  ++ + +V  SL++MY         G      
Sbjct: 98  TYSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGY 157

Query: 309 -------VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
                    FD++  + + A+  +I  Y +      A+K F  M   GIK +  +  +  
Sbjct: 158 SRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVF 217

Query: 362 NGCSPVATLANGRLLHSIAVKTG--HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
              S +    N  ++H + VK G  ++ D++V ++ + MYA+ G ++ A+ VF     R+
Sbjct: 218 PAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERN 277

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLD-EGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           T  WN MI  +V++    + ++ F   ++ E    DE+T +  +SA SH+   E  ++  
Sbjct: 278 TEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLH 337

Query: 479 SSIKKIYGIT 488
           + + K   +T
Sbjct: 338 AFVIKNVAVT 347


>gi|255545144|ref|XP_002513633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547541|gb|EEF49036.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 186/587 (31%), Positives = 302/587 (51%), Gaps = 2/587 (0%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E A ++F  M   + VSW  ++    ++G     + ++  M + +   ++F+   +L   
Sbjct: 172 EDACKLFSYMDSGDTVSWTTVIASCVQAGKCSHALRIYMEMLEAQVSSNEFTFVRLLAAS 231

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           +  G ++ G+++HA AI LG  L+  L  +LV+MYS+C   ++A+KV     + DV+ W 
Sbjct: 232 SFIG-LQYGKLIHAHAIVLGVKLNLVLKTALVNMYSRCQRIEDAIKVSKLTPEYDVILWT 290

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           AII+ L Q    QEA   F+ M  S V  + F   S++           G  IH+ + + 
Sbjct: 291 AIISGLAQNMKFQEAVAAFHKMEISGVSASNFTYLSMLSVCISILSLDLGRQIHSRVIRT 350

Query: 182 GFESDTLVGNALVSMYME-NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           G E D  VGNALV MYM+ +  V +G R+F  I   + +SW +L + F ++      L +
Sbjct: 351 GLEDDVPVGNALVDMYMKCSCIVEHGLRMFRGIKSPNVISWTSLIAGFAEHGFQQDSLNL 410

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M   G +PN  T  ++L+ CS++       +LH H IK   D + VVG +LVD Y  
Sbjct: 411 FMEMRTVGVQPNSFTLSIVLRVCSAIKSPYQTLKLHGHIIKTKADYDVVVGNALVDAYAG 470

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
           SG ++DA      +  +D   YT++ T   Q G  E+AL     M    +K + F+L   
Sbjct: 471 SGRVDDAWRVVKDMNQRDSITYTSLATRLNQMGYHELALSVISHMFNADVKIDGFSLTCF 530

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
            +  + +  +  G+ LH  ++K+G    + V+  L+ +Y K G + +A   F      D 
Sbjct: 531 FSASASLGRIETGKQLHCYSLKSGLSCCLSVANGLIDLYGKYGLVHEARRAFTEITEPDV 590

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SWN +I G   +G    AL AF  M   G  PD ITF++VLS CSH GL++ G ++F S
Sbjct: 591 VSWNGLISGLASNGHISSALSAFDDMRLRGIQPDSITFLLVLSTCSHGGLVDMGLQYFHS 650

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +++++ + P   H+ C++DILGRAG+  E  N I    L P+A +++ LL ACS H N+ 
Sbjct: 651 MREMHDVEPQSDHYVCLVDILGRAGRLEEAMNIIETMPLEPDASIYKTLLAACSIHRNMN 710

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQG 587
           L E  A + LEL P   + ++    +    GR++     R  +  +G
Sbjct: 711 LGEDVARRGLELNPLDPAFHLLLVKLYDDCGRYDLGEKTRRSIKQKG 757



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 155/558 (27%), Positives = 274/558 (49%), Gaps = 8/558 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A++ F  MP  +VVSW  +L+ + ++   ++ + +F  M       + F+ S++L+ 
Sbjct: 70  VEHARQFFDEMPCRDVVSWTGILSAHIKNERHEEALDIFDFMVLSGPYPNAFTFSSILRS 129

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
               G    G+ +HA +I+ G   ++ L  SL+D+YS+    ++A K+F  +   D V+W
Sbjct: 130 CFALGDFSYGKRIHASSIKHGFESNQILGSSLIDLYSRFDSTEDACKLFSYMDSGDTVSW 189

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I    Q G C  A +I+  M E+ V  N+F    L+ A++  G Q  G+ IHA    
Sbjct: 190 TTVIASCVQAGKCSHALRIYMEMLEAQVSSNEFTFVRLLAASSFIGLQY-GKLIHAHAIV 248

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G + + ++  ALV+MY    R+    +V +     D + W A+ S         + +  
Sbjct: 249 LGVKLNLVLKTALVNMYSRCQRIEDAIKVSKLTPEYDVILWTAIISGLAQNMKFQEAVAA 308

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F++M + G   +  T++ +L  C S+  +  G+Q+H+  I+  L+ +  VG +LVDMY K
Sbjct: 309 FHKMEISGVSASNFTYLSMLSVCISILSLDLGRQIHSRVIRTGLEDDVPVGNALVDMYMK 368

Query: 301 SGCLEDAGV-AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
             C+ + G+  F  + + ++ ++T++I  +A+ G  + +L  F +MR  G++ N FTL+ 
Sbjct: 369 CSCIVEHGLRMFRGIKSPNVISWTSLIAGFAEHGFQQDSLNLFMEMRTVGVQPNSFTLSI 428

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L  CS + +      LH   +KT    D+ V  ALV  YA  G +DDA  V K    RD
Sbjct: 429 VLRVCSAIKSPYQTLKLHGHIIKTKADYDVVVGNALVDAYAGSGRVDDAWRVVKDMNQRD 488

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HF 478
           + ++  +     + G  E AL     M +     D  +     SA + +G IE GK+ H 
Sbjct: 489 SITYTSLATRLNQMGYHELALSVISHMFNADVKIDGFSLTCFFSASASLGRIETGKQLHC 548

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            S+K   G++  +     +ID+ G+ G   E     TE    P+ + W  L+   + +G+
Sbjct: 549 YSLKS--GLSCCLSVANGLIDLYGKYGLVHEARRAFTEIT-EPDVVSWNGLISGLASNGH 605

Query: 539 IE--LDEKDAEKLLELEP 554
           I   L   D  +L  ++P
Sbjct: 606 ISSALSAFDDMRLRGIQP 623



 Score =  198 bits (503), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 130/405 (32%), Positives = 209/405 (51%), Gaps = 2/405 (0%)

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           N   +K G  +H+  I+LG     +L+ +L+ +YSKC   ++A + F  +   DVV+W  
Sbjct: 31  NLKSLKEGVCIHSPIIKLGLQDHLYLNNNLLSLYSKCFSVEHARQFFDEMPCRDVVSWTG 90

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I++   +    +EA  IF+ M  S   PN F  +S++R+    GD   G+ IHA   K+G
Sbjct: 91  ILSAHIKNERHEEALDIFDFMVLSGPYPNAFTFSSILRSCFALGDFSYGKRIHASSIKHG 150

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           FES+ ++G++L+ +Y          ++F  +   D+VSW  + +           LRI+ 
Sbjct: 151 FESNQILGSSLIDLYSRFDSTEDACKLFSYMDSGDTVSWTTVIASCVQAGKCSHALRIYM 210

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +ML      N  TF+ +L A SS   + +GK +HAH I   +  N V+ T+LV+MY +  
Sbjct: 211 EMLEAQVSSNEFTFVRLL-AASSFIGLQYGKLIHAHAIVLGVKLNLVLKTALVNMYSRCQ 269

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            +EDA          D+  +TAII+  AQ  + + A+  F KM + G+ ++ FT  S L+
Sbjct: 270 RIEDAIKVSKLTPEYDVILWTAIISGLAQNMKFQEAVAAFHKMEISGVSASNFTYLSMLS 329

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSI-DDAEAVFKGSALRDTA 421
            C  + +L  GR +HS  ++TG   D+ V  ALV MY KC  I +    +F+G    +  
Sbjct: 330 VCISILSLDLGRQIHSRVIRTGLEDDVPVGNALVDMYMKCSCIVEHGLRMFRGIKSPNVI 389

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
           SW  +I G+ +HG  + +L  F  M   G  P+  T  +VL  CS
Sbjct: 390 SWTSLIAGFAEHGFQQDSLNLFMEMRTVGVQPNSFTLSIVLRVCS 434



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/367 (29%), Positives = 189/367 (51%), Gaps = 2/367 (0%)

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
           G  IH+ I K G +    + N L+S+Y +   V +  + F+ +  +D VSW  + S    
Sbjct: 38  GVCIHSPIIKLGLQDHLYLNNNLLSLYSKCFSVEHARQFFDEMPCRDVVSWTGILSAHIK 97

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
            E  ++ L IF  M+L G  PN  TF  IL++C +L D  +GK++HA +IKH  + N ++
Sbjct: 98  NERHEEALDIFDFMVLSGPYPNAFTFSSILRSCFALGDFSYGKRIHASSIKHGFESNQIL 157

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
           G+SL+D+Y +    EDA   F  + + D  ++T +I S  QAG+   AL+ + +M    +
Sbjct: 158 GSSLIDLYSRFDSTEDACKLFSYMDSGDTVSWTTVIASCVQAGKCSHALRIYMEMLEAQV 217

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
            SNEFT    L   S +  L  G+L+H+ A+  G  L++ + TALV MY++C  I+DA  
Sbjct: 218 SSNEFTFVRLLAASSFIG-LQYGKLIHAHAIVLGVKLNLVLKTALVNMYSRCQRIEDAIK 276

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           V K +   D   W  +I G  ++   ++A+ AF  M   G      T++ +LS C  +  
Sbjct: 277 VSKLTPEYDVILWTAIISGLAQNMKFQEAVAAFHKMEISGVSASNFTYLSMLSVCISILS 336

Query: 471 IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
           ++ G++  S + +  G+   +     ++D+  +     E    +     +PN + W +L+
Sbjct: 337 LDLGRQIHSRVIRT-GLEDDVPVGNALVDMYMKCSCIVEHGLRMFRGIKSPNVISWTSLI 395

Query: 531 GACSWHG 537
              + HG
Sbjct: 396 AGFAEHG 402



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 156/319 (48%), Gaps = 13/319 (4%)

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF 311
           ++C+ +V L    SL +   G  +H+  IK  L  +  +  +L+ +Y K   +E A   F
Sbjct: 21  DVCSKVVSLCNLKSLKE---GVCIHSPIIKLGLQDHLYLNNNLLSLYSKCFSVEHARQFF 77

Query: 312 DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLA 371
           D +  +D+ ++T I++++ +    E AL  F  M L G   N FT +S L  C  +   +
Sbjct: 78  DEMPCRDVVSWTGILSAHIKNERHEEALDIFDFMVLSGPYPNAFTFSSILRSCFALGDFS 137

Query: 372 NGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV 431
            G+ +H+ ++K G   +  + ++L+ +Y++  S +DA  +F      DT SW  +I   V
Sbjct: 138 YGKRIHASSIKHGFESNQILGSSLIDLYSRFDSTEDACKLFSYMDSGDTVSWTTVIASCV 197

Query: 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI 491
           + G    AL  +  ML+     +E TFV +L+A S +GL      H  +I  + G+   +
Sbjct: 198 QAGKCSHALRIYMEMLEAQVSSNEFTFVRLLAASSFIGLQYGKLIHAHAI--VLGVKLNL 255

Query: 492 KHFACMIDILGRAGKFTEIENFITETKLTP--NALVWENLLGACSWHGNIELDEKDAE-K 548
                ++++  R  +   IE+ I  +KLTP  + ++W  ++   +   N++  E  A   
Sbjct: 256 VLKTALVNMYSRCQR---IEDAIKVSKLTPEYDVILWTAIISGLAQ--NMKFQEAVAAFH 310

Query: 549 LLELEPKMESNYVFPSDIS 567
            +E+     SN+ + S +S
Sbjct: 311 KMEISGVSASNFTYLSMLS 329


>gi|449463559|ref|XP_004149501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
 gi|449511944|ref|XP_004164096.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 566

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 176/520 (33%), Positives = 278/520 (53%), Gaps = 17/520 (3%)

Query: 91  SLVDMYSKCGLADNALKVFYRIKDP----DVVAWGAIITCLDQQGCCQEAAKIFNLMRES 146
           SL++MYS+C   + A+ VF   +DP    +V A+ AII      G   +  + +  MR  
Sbjct: 15  SLINMYSRCNQMEEAVLVF---RDPYHERNVFAYNAIIAGFVANGLAADGFQFYKRMRSV 71

Query: 147 SVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYG 206
            V P++F    +VRA  E  + R    IH  + K G E +  VG+ALV+ Y++       
Sbjct: 72  GVMPDKFTFPCVVRACCEFMEVR---KIHGCLFKMGLELNVFVGSALVNTYLKVDGTEDA 128

Query: 207 SRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266
            +VFE +  +D V WNA+ + +      ++ + +F +M  +G   +  T   IL   +S+
Sbjct: 129 EKVFEELPERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRFTTTSILSILTSM 188

Query: 267 SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
            D+  G+ +H    K        V  +L+DMY K    EDA + F+ +  KDLF++ +II
Sbjct: 189 GDINNGRAIHGIVTKMGYSSCVAVSNALIDMYGKCKHTEDALMIFEMINEKDLFSWNSII 248

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG-- 384
           +++ Q  + +  L+ F KM    +  +  T+ + L  CS +A L +GR +H   +  G  
Sbjct: 249 SAHEQCDDHDGTLRLFGKMLGSRVLPDVITITAVLPACSHLAALMHGREIHGYMIVNGLG 308

Query: 385 ---HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALE 441
              +  D+ ++ A++ MYAKCG + +A+ +F     +D ASWN+MI GY  HG G +AL+
Sbjct: 309 KNENGDDVLLNNAIMDMYAKCGCMKNADIIFDLMRNKDVASWNIMIMGYAMHGYGTEALD 368

Query: 442 AFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDIL 501
            F  M +    PD +TFV VLSACSH G + +G+   + ++  +G+ PTI+H+ C+ID+L
Sbjct: 369 MFHRMCEAQIKPDVVTFVGVLSACSHAGFVHQGRSFLTRMELEFGVIPTIEHYTCIIDML 428

Query: 502 GRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKM--ESN 559
           GRAG   E  +      L  N ++W  LLGAC  HGN EL     EK+ +LEPK     +
Sbjct: 429 GRAGHLGEAYDLAQRIPLEDNLILWMALLGACRLHGNAELGNVVGEKITQLEPKHCGSGS 488

Query: 560 YVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           Y+  S +    GR+ +   VR  +  Q +KK P CSWIE+
Sbjct: 489 YILMSSLYGVVGRYEEALEVRRTMKEQNVKKTPGCSWIEL 528



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 124/445 (27%), Positives = 215/445 (48%), Gaps = 11/445 (2%)

Query: 1   MELAKRVFK-SMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           ME A  VF+    E NV ++NA++ G+  +G        +  M+ +     KF+   V++
Sbjct: 26  MEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADGFQFYKRMRSVGVMPDKFTFPCVVR 85

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
                  ++    +H    ++G  L+ F+  +LV+ Y K    ++A KVF  + + DVV 
Sbjct: 86  ACCEFMEVRK---IHGCLFKMGLELNVFVGSALVNTYLKVDGTEDAEKVFEELPERDVVL 142

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W A+I    + G   +A  +F  M E  +  ++F  TS++   T  GD   G +IH ++ 
Sbjct: 143 WNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRFTTTSILSILTSMGDINNGRAIHGIVT 202

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K G+ S   V NAL+ MY +         +FE I  +D  SWN++ S  +  +  D  LR
Sbjct: 203 KMGYSSCVAVSNALIDMYGKCKHTEDALMIFEMINEKDLFSWNSIISAHEQCDDHDGTLR 262

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH-----VVGTSL 294
           +F +ML     P++ T   +L ACS L+ +  G+++H + I + L  N      ++  ++
Sbjct: 263 LFGKMLGSRVLPDVITITAVLPACSHLAALMHGREIHGYMIVNGLGKNENGDDVLLNNAI 322

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           +DMY K GC+++A + FD + NKD+ ++  +I  YA  G    AL  F +M    IK + 
Sbjct: 323 MDMYAKCGCMKNADIIFDLMRNKDVASWNIMIMGYAMHGYGTEALDMFHRMCEAQIKPDV 382

Query: 355 FTLASCLNGCSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
            T    L+ CS    +  GR  L  + ++ G +  +   T ++ M  + G + +A  + +
Sbjct: 383 VTFVGVLSACSHAGFVHQGRSFLTRMELEFGVIPTIEHYTCIIDMLGRAGHLGEAYDLAQ 442

Query: 414 GSALRDT-ASWNMMIGGYVKHGLGE 437
              L D    W  ++G    HG  E
Sbjct: 443 RIPLEDNLILWMALLGACRLHGNAE 467



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 134/285 (47%), Gaps = 25/285 (8%)

Query: 292 TSLVDMYDKSGCLEDAGVAF-DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
           TSL++MY +   +E+A + F D    +++FAY AII  +   G A    + +++MR  G+
Sbjct: 14  TSLINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADGFQFYKRMRSVGV 73

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
             ++FT    +  C     +   R +H    K G  L++FV +ALV  Y K    +DAE 
Sbjct: 74  MPDKFTFPCVVRACCEFMEV---RKIHGCLFKMGLELNVFVGSALVNTYLKVDGTEDAEK 130

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           VF+    RD   WN MI GY K G   KA+  F+ M +EG      T   +LS  + MG 
Sbjct: 131 VFEELPERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRFTTTSILSILTSMGD 190

Query: 471 IEEGKKHFSSIKKIYGITPTIKHFAC------MIDILGRAGKFTEIENFITETKLTPNAL 524
           I  G       + I+GI   + + +C      +ID+ G+  K TE    I E     +  
Sbjct: 191 INNG-------RAIHGIVTKMGYSSCVAVSNALIDMYGKC-KHTEDALMIFEMINEKDLF 242

Query: 525 VWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISAT 569
            W +++ A     + + D+ D    L L  KM  + V P  I+ T
Sbjct: 243 SWNSIISA-----HEQCDDHDGT--LRLFGKMLGSRVLPDVITIT 280


>gi|449456661|ref|XP_004146067.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 793

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 194/609 (31%), Positives = 314/609 (51%), Gaps = 11/609 (1%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           +L ++VF +M +  VV+WN L+  Y  +    + +  F  M  +  K S  S   V   F
Sbjct: 137 DLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAF 196

Query: 62  ANSGYIKAGQVVHAMAIRLGCAL--DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           ++ G  K   VVH M ++LG     D ++  S + MY++ G  + A KVF    + +   
Sbjct: 197 SSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEV 256

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESS-VKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           W  +I+   Q     E  ++F    ES     ++  L S + A +        E +HA +
Sbjct: 257 WNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFV 316

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K    +   V NAL++MY     +    ++F+ +  +D VSWN + S F      D+ L
Sbjct: 317 IKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEAL 376

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            +FY+M  +    +  T   +L A S L +   GKQ H + +++ +    +  + L+DMY
Sbjct: 377 MLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGM-DSYLIDMY 435

Query: 299 DKSGCLEDAGVAFD-SLAN-KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
            KSG +E A   F+ S ++ +D   + ++++ Y Q G  + A    R+M  + +  N  T
Sbjct: 436 AKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVT 495

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
           LAS L  C+P   +  G+ LH  +++     ++FV+TAL+ MY+K GSI  AE VF  + 
Sbjct: 496 LASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKAN 555

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            +   +++ MI GY +HG+GE AL  F  M   G  PD +T V VLSACS+ GL++EG +
Sbjct: 556 EKSIVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQ 615

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNAL-VWENLLGACSW 535
            F S++ +Y I P+ +HF C+ D+LGRAG+  +   F+       N + +W +LL AC  
Sbjct: 616 IFESMRTVYNIQPSTEHFCCVADMLGRAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRI 675

Query: 536 HGNIELDEKDAEKLLELEPKMESN---YVFPSDISATQGRWNDFSGVRALLSSQGIKKEP 592
           H   EL +  A+KLLE+E K+      +V  S+I A +  W +   VR  +  +G+KKE 
Sbjct: 676 HKQFELGKLVAKKLLEME-KINGKTGYHVLLSNIYAEERNWENVDIVRKQMRERGLKKET 734

Query: 593 SCSWIEVDG 601
             SWIE+ G
Sbjct: 735 GSSWIEIAG 743



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 139/537 (25%), Positives = 264/537 (49%), Gaps = 24/537 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDM--EKKFSKFSLSTVL 58
           + LA+++F ++P  + V WN ++ G   +    + +  + +MK    + K   ++ S+VL
Sbjct: 20  LHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSSVL 79

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLA-------------DNA 105
           K  A++  +  G+ VHA  +R      + +  SL++MYS C                D  
Sbjct: 80  KACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLV 139

Query: 106 LKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTET 165
            KVF  ++   VVAW  +I    +     EA K F++M +  +KP+     ++  A +  
Sbjct: 140 RKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSL 199

Query: 166 GDQRCGESIHAVICKYGFE--SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNA 223
           GD +    +H ++ K G E  +D  V ++ + MY E G + +  +VF+    +++  WN 
Sbjct: 200 GDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNT 259

Query: 224 LFSRFQDYESPDQGLRIFYQML-LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKH 282
           + S F       +G+++F+Q +  +    +  T +  + A S L      +QLHA  IK+
Sbjct: 260 MISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKN 319

Query: 283 SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCF 342
                  V  +L+ MY +   ++ +   FD++  KD+ ++  +I+++ Q G  + AL  F
Sbjct: 320 VAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLF 379

Query: 343 RKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC 402
            +M+ + +  +  T+ + L+  S +     G+  H   ++ G   +  + + L+ MYAK 
Sbjct: 380 YEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEG-MDSYLIDMYAKS 438

Query: 403 GSIDDAEAVFKG--SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVV 460
           G I+ A+ VF+   S  RD A+WN M+ GY ++GL ++A    R MLD+  +P+ +T   
Sbjct: 439 GLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLAS 498

Query: 461 VLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE 516
           +L AC+  G I+ GK+ H  SI+    +   +     +ID+  ++G     EN  ++
Sbjct: 499 ILPACNPSGYIDWGKQLHGFSIRN--DLDQNVFVATALIDMYSKSGSIAHAENVFSK 553



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 144/310 (46%), Gaps = 22/310 (7%)

Query: 199 ENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM----C 254
           + G++    ++F+A+    +V WN +         PD+ L  +  M  K   P +     
Sbjct: 16  QEGQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNM--KSSSPQVKCDSY 73

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG------ 308
           T+  +LKAC+   ++  GK +HAH ++  ++ + +V  SL++MY         G      
Sbjct: 74  TYSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGY 133

Query: 309 -------VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
                    FD++  + + A+  +I  Y +      A+K F  M   GIK +  +  +  
Sbjct: 134 SRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVF 193

Query: 362 NGCSPVATLANGRLLHSIAVKTG--HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
              S +    N  ++H + VK G  ++ D++V ++ + MYA+ G ++ A+ VF     R+
Sbjct: 194 PAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERN 253

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLD-EGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           T  WN MI  +V++    + ++ F   ++ E    DE+T +  +SA SH+   E  ++  
Sbjct: 254 TEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLH 313

Query: 479 SSIKKIYGIT 488
           + + K   +T
Sbjct: 314 AFVIKNVAVT 323


>gi|15231917|ref|NP_188091.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274207|sp|Q9LUC2.1|PP231_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g14730
 gi|9294394|dbj|BAB02404.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642039|gb|AEE75560.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 653

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 183/567 (32%), Positives = 298/567 (52%), Gaps = 15/567 (2%)

Query: 42  MKDMEKKFSKFSLSTVLKGFANSGYIK---AGQVVHAMAIRLGCALDKFLS-CSLVDMYS 97
           +++  K++   +++T +         K   +GQ +H   +R G   D   +  SLV+MY+
Sbjct: 48  IEENPKRYEHHNVATCIATLQRCAQRKDYVSGQQIHGFMVRKGFLDDSPRAGTSLVNMYA 107

Query: 98  KCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTS 157
           KCGL   A+ VF    + DV  + A+I+     G   +A + +  MR + + P+++   S
Sbjct: 108 KCGLMRRAVLVFGG-SERDVFGYNALISGFVVNGSPLDAMETYREMRANGILPDKYTFPS 166

Query: 158 LVRAT--TETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH 215
           L++ +   E  D +    +H +  K GF+SD  VG+ LV+ Y +   V    +VF+ +  
Sbjct: 167 LLKGSDAMELSDVK---KVHGLAFKLGFDSDCYVGSGLVTSYSKFMSVEDAQKVFDELPD 223

Query: 216 QD-SVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ 274
           +D SV WNAL + +      +  L +F +M  +G   +  T   +L A +   D+  G+ 
Sbjct: 224 RDDSVLWNALVNGYSQIFRFEDALLVFSKMREEGVGVSRHTITSVLSAFTVSGDIDNGRS 283

Query: 275 LHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGE 334
           +H   +K     + VV  +L+DMY KS  LE+A   F+++  +DLF + +++  +   G+
Sbjct: 284 IHGLAVKTGSGSDIVVSNALIDMYGKSKWLEEANSIFEAMDERDLFTWNSVLCVHDYCGD 343

Query: 335 AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL----LDMF 390
            +  L  F +M   GI+ +  TL + L  C  +A+L  GR +H   + +G L     + F
Sbjct: 344 HDGTLALFERMLCSGIRPDIVTLTTVLPTCGRLASLRQGREIHGYMIVSGLLNRKSSNEF 403

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
           +  +L+ MY KCG + DA  VF    ++D+ASWN+MI GY     GE AL+ F  M   G
Sbjct: 404 IHNSLMDMYVKCGDLRDARMVFDSMRVKDSASWNIMINGYGVQSCGELALDMFSCMCRAG 463

Query: 451 YVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEI 510
             PDEITFV +L ACSH G + EG+   + ++ +Y I PT  H+AC+ID+LGRA K  E 
Sbjct: 464 VKPDEITFVGLLQACSHSGFLNEGRNFLAQMETVYNILPTSDHYACVIDMLGRADKLEEA 523

Query: 511 ENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQ 570
                   +  N +VW ++L +C  HGN +L     ++L ELEP+    YV  S++    
Sbjct: 524 YELAISKPICDNPVVWRSILSSCRLHGNKDLALVAGKRLHELEPEHCGGYVLMSNVYVEA 583

Query: 571 GRWNDFSGVRALLSSQGIKKEPSCSWI 597
           G++ +   VR  +  Q +KK P CSWI
Sbjct: 584 GKYEEVLDVRDAMRQQNVKKTPGCSWI 610



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/367 (31%), Positives = 185/367 (50%), Gaps = 6/367 (1%)

Query: 13  ELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQV 72
           E +V  +NAL++G+  +G     M  +  M+       K++  ++LKG +++  +   + 
Sbjct: 123 ERDVFGYNALISGFVVNGSPLDAMETYREMRANGILPDKYTFPSLLKG-SDAMELSDVKK 181

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD-PDVVAWGAIITCLDQQG 131
           VH +A +LG   D ++   LV  YSK    ++A KVF  + D  D V W A++    Q  
Sbjct: 182 VHGLAFKLGFDSDCYVGSGLVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVNGYSQIF 241

Query: 132 CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGN 191
             ++A  +F+ MRE  V  ++  +TS++ A T +GD   G SIH +  K G  SD +V N
Sbjct: 242 RFEDALLVFSKMREEGVGVSRHTITSVLSAFTVSGDIDNGRSIHGLAVKTGSGSDIVVSN 301

Query: 192 ALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKP 251
           AL+ MY ++  +   + +FEA+  +D  +WN++          D  L +F +ML  G +P
Sbjct: 302 ALIDMYGKSKWLEEANSIFEAMDERDLFTWNSVLCVHDYCGDHDGTLALFERMLCSGIRP 361

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL----DGNHVVGTSLVDMYDKSGCLEDA 307
           ++ T   +L  C  L+ +  G+++H + I   L      N  +  SL+DMY K G L DA
Sbjct: 362 DIVTLTTVLPTCGRLASLRQGREIHGYMIVSGLLNRKSSNEFIHNSLMDMYVKCGDLRDA 421

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367
            + FDS+  KD  ++  +I  Y      E+AL  F  M   G+K +E T    L  CS  
Sbjct: 422 RMVFDSMRVKDSASWNIMINGYGVQSCGELALDMFSCMCRAGVKPDEITFVGLLQACSHS 481

Query: 368 ATLANGR 374
             L  GR
Sbjct: 482 GFLNEGR 488



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 175/354 (49%), Gaps = 11/354 (3%)

Query: 1   MELAKRVFKSMPELN-VVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           +E A++VF  +P+ +  V WNAL+NGY++    +  + +F  M++     S+ ++++VL 
Sbjct: 211 VEDAQKVFDELPDRDDSVLWNALVNGYSQIFRFEDALLVFSKMREEGVGVSRHTITSVLS 270

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
            F  SG I  G+ +H +A++ G   D  +S +L+DMY K    + A  +F  + + D+  
Sbjct: 271 AFTVSGDIDNGRSIHGLAVKTGSGSDIVVSNALIDMYGKSKWLEEANSIFEAMDERDLFT 330

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W +++   D  G       +F  M  S ++P+   LT+++         R G  IH  + 
Sbjct: 331 WNSVLCVHDYCGDHDGTLALFERMLCSGIRPDIVTLTTVLPTCGRLASLRQGREIHGYMI 390

Query: 180 KYGF----ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD 235
             G      S+  + N+L+ MY++ G +     VF+++  +DS SWN + + +      +
Sbjct: 391 VSGLLNRKSSNEFIHNSLMDMYVKCGDLRDARMVFDSMRVKDSASWNIMINGYGVQSCGE 450

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAH--TIKHSLD-GNHVVGT 292
             L +F  M   G KP+  TF+ +L+ACS    +  G+   A   T+ + L   +H    
Sbjct: 451 LALDMFSCMCRAGVKPDEITFVGLLQACSHSGFLNEGRNFLAQMETVYNILPTSDHY--A 508

Query: 293 SLVDMYDKSGCLEDA-GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM 345
            ++DM  ++  LE+A  +A       +   + +I++S    G  ++AL   +++
Sbjct: 509 CVIDMLGRADKLEEAYELAISKPICDNPVVWRSILSSCRLHGNKDLALVAGKRL 562


>gi|297835788|ref|XP_002885776.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331616|gb|EFH62035.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 582

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 194/579 (33%), Positives = 299/579 (51%), Gaps = 9/579 (1%)

Query: 11  MPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAG 70
           MPE + V WNAL+ GY+ +G       LF  M       S  +L  +L      G++  G
Sbjct: 1   MPERDTVVWNALICGYSRNGYESDAWKLFIVMLQQGFSPSATTLVNLLPFCGQCGFVSQG 60

Query: 71  QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
           + VH +A + G  +D  +  +L+  YSKC   D+A  +F  +KD   V+W  +I    Q 
Sbjct: 61  RSVHGIAAKSGLEMDSQVKNALISFYSKCAELDSAEVLFREMKDKSTVSWNTMIGAYSQS 120

Query: 131 GCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVG 190
           G  +EA  +F  M E SV+ +   + +L+ A          E +H ++ K G  +D  V 
Sbjct: 121 GLMEEAITVFKNMFEKSVEISPVTIINLLSAHVSH------EPLHCLVVKSGMVNDISVV 174

Query: 191 NALVSMYMENGRVSYGSRVFEAIAHQDS-VSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
            +LV  Y   G +    R++ A A+QDS V   ++ S + +    D  +  F +M     
Sbjct: 175 TSLVCAYSRCGYLDSAERLY-ASANQDSIVGLTSIVSSYAEKGDMDIAVVYFSKMRQLCM 233

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
           K +    + IL  C + S +  G  LH + IK  L    +V   L+ MY K   +E    
Sbjct: 234 KIDAVALVGILHGCKNSSHIDIGMSLHGYAIKSGLCRKTLVVNGLITMYSKFDDVETVLF 293

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG-IKSNEFTLASCLNGCSPVA 368
            F  L    L ++ ++I+   Q+G A  A + F +M+L G +  +  T+AS L GCS + 
Sbjct: 294 LFQQLQETPLISWNSVISGCVQSGRASTAFEVFHQMKLSGGLLPDAITIASLLAGCSQLC 353

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
            L  G+ LH   ++     + FV TAL+ MYAKCG+   AE+VFK      TA+WN MI 
Sbjct: 354 CLNLGKELHGYTLRNNFENENFVCTALIDMYAKCGNEVQAESVFKSIKAPCTATWNSMIS 413

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGIT 488
           GY   GL  +AL  +  M ++G  PD+ITF+ VLSAC+H G ++EGK +F ++ K +GI+
Sbjct: 414 GYSLSGLQNRALSCYLEMREKGLKPDKITFLGVLSACTHGGFVDEGKIYFRAMIKEFGIS 473

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEK 548
           P ++H+A M+ +LGRA  FTE    I +  + P++ VW  LL AC  H  +E+ E  A+K
Sbjct: 474 PCLQHYALMVGLLGRACLFTEALYLIWKMDIKPDSAVWGALLSACIIHRELEVGEYIAKK 533

Query: 549 LLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQG 587
           +  L+ K    YV  S++ AT+  W+D   VR ++   G
Sbjct: 534 MFMLDYKNGGLYVLMSNLYATEAMWDDVVRVRKMMKDNG 572



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/436 (23%), Positives = 203/436 (46%), Gaps = 9/436 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+ +F+ M + + VSWN ++  Y++SG  ++ + +F +M +   + S  ++  +L  
Sbjct: 92  LDSAEVLFREMKDKSTVSWNTMIGAYSQSGLMEEAITVFKNMFEKSVEISPVTIINLLSA 151

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +       + +H + ++ G   D  +  SLV  YS+CG  D+A +++       +V  
Sbjct: 152 HVSH------EPLHCLVVKSGMVNDISVVTSLVCAYSRCGYLDSAERLYASANQDSIVGL 205

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +I++   ++G    A   F+ MR+  +K +   L  ++     +     G S+H    K
Sbjct: 206 TSIVSSYAEKGDMDIAVVYFSKMRQLCMKIDAVALVGILHGCKNSSHIDIGMSLHGYAIK 265

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G    TLV N L++MY +   V     +F+ +     +SWN++ S             +
Sbjct: 266 SGLCRKTLVVNGLITMYSKFDDVETVLFLFQQLQETPLISWNSVISGCVQSGRASTAFEV 325

Query: 241 FYQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           F+QM L  G  P+  T   +L  CS L  +  GK+LH +T++++ +  + V T+L+DMY 
Sbjct: 326 FHQMKLSGGLLPDAITIASLLAGCSQLCCLNLGKELHGYTLRNNFENENFVCTALIDMYA 385

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G    A   F S+       + ++I+ Y+ +G    AL C+ +MR +G+K ++ T   
Sbjct: 386 KCGNEVQAESVFKSIKAPCTATWNSMISGYSLSGLQNRALSCYLEMREKGLKPDKITFLG 445

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVA--MYAKCGSIDDAEAVFKGSAL 417
            L+ C+    +  G++     +K   +       AL+   +   C   +    ++K    
Sbjct: 446 VLSACTHGGFVDEGKIYFRAMIKEFGISPCLQHYALMVGLLGRACLFTEALYLIWKMDIK 505

Query: 418 RDTASWNMMIGGYVKH 433
            D+A W  ++   + H
Sbjct: 506 PDSAVWGALLSACIIH 521


>gi|15241714|ref|NP_198751.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171567|sp|Q9FLZ9.1|PP405_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g39350
 gi|10177683|dbj|BAB11009.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007040|gb|AED94423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 677

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 183/602 (30%), Positives = 299/602 (49%), Gaps = 6/602 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSK--FSLSTVLKGF 61
           A+++F+ MP+ +++S+N ++  Y   G     + +F  M     K     ++   V K  
Sbjct: 68  ARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKAA 127

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
                +K G VVH   +R     DK++  +L+ MY   G  + A  VF  +K+ DV++W 
Sbjct: 128 GELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWN 187

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            +I+   + G   +A  +F+ M   SV  +   + S++       D   G ++H ++ + 
Sbjct: 188 TMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEK 247

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
                  V NALV+MY++ GR+     VF+ +  +D ++W  + + + +    +  L + 
Sbjct: 248 RLGDKIEVKNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTEDGDVENALELC 307

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
             M  +G +PN  T   ++  C     V  GK LH   ++  +  + ++ TSL+ MY K 
Sbjct: 308 RLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKC 367

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
             ++     F   +      ++AII    Q      AL  F++MR E ++ N  TL S L
Sbjct: 368 KRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLL 427

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG----SAL 417
              + +A L     +H    KTG +  +  +T LV +Y+KCG+++ A  +F G       
Sbjct: 428 PAYAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKS 487

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           +D   W  +I GY  HG G  AL+ F  M+  G  P+EITF   L+ACSH GL+EEG   
Sbjct: 488 KDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTL 547

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F  + + Y       H+ C++D+LGRAG+  E  N IT     P + VW  LL AC  H 
Sbjct: 548 FRFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTSTVWGALLAACVTHE 607

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           N++L E  A KL ELEP+   NYV  ++I A  GRW D   VR+++ + G++K+P  S I
Sbjct: 608 NVQLGEMAANKLFELEPENTGNYVLLANIYAALGRWKDMEKVRSMMENVGLRKKPGHSTI 667

Query: 598 EV 599
           E+
Sbjct: 668 EI 669



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 135/519 (26%), Positives = 243/519 (46%), Gaps = 14/519 (2%)

Query: 56  TVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP 115
           ++L  FA +  I   + +H   I  G      LS +L   Y+ CG    A K+F  +   
Sbjct: 20  SLLNHFAATQSISKTKALHCHVITGGRVSGHILS-TLSVTYALCGHITYARKLFEEMPQS 78

Query: 116 DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK--PNQFVLTSLVRATTETGDQRCGES 173
            ++++  +I    ++G   +A  +F  M    VK  P+ +    + +A  E    + G  
Sbjct: 79  SLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKAAGELKSMKLGLV 138

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           +H  I +  F  D  V NAL++MYM  G+V     VF+ + ++D +SWN + S +     
Sbjct: 139 VHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRNGY 198

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
            +  L +F  M+ +    +  T + +L  C  L D+  G+ +H    +  L     V  +
Sbjct: 199 MNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNA 258

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           LV+MY K G +++A   FD +  +D+  +T +I  Y + G+ E AL+  R M+ EG++ N
Sbjct: 259 LVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVRPN 318

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
             T+AS ++ C     + +G+ LH  AV+     D+ + T+L++MYAKC  +D    VF 
Sbjct: 319 AVTIASLVSVCGDALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFS 378

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
           G++   T  W+ +I G V++ L   AL  F+ M  E   P+  T   +L A + +  + +
Sbjct: 379 GASKYHTGPWSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQ 438

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFT---EIENFITETKLTPNALVWENLL 530
                  + K  G   ++     ++ +  + G      +I N I E   + + ++W  L+
Sbjct: 439 AMNIHCYLTKT-GFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALI 497

Query: 531 GACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISAT 569
                HG       D    L++  +M  + V P++I+ T
Sbjct: 498 SGYGMHG-------DGHNALQVFMEMVRSGVTPNEITFT 529



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 121/452 (26%), Positives = 211/452 (46%), Gaps = 17/452 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E+A+ VF  M   +V+SWN +++GY  +G     + +F  M +        ++ ++L  
Sbjct: 168 VEMARDVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPV 227

Query: 61  FANSGYIKAGQVVHAMA--IRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
             +   ++ G+ VH +    RLG  ++  +  +LV+MY KCG  D A  VF R++  DV+
Sbjct: 228 CGHLKDLEMGRNVHKLVEEKRLGDKIE--VKNALVNMYLKCGRMDEARFVFDRMERRDVI 285

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            W  +I    + G  + A ++  LM+   V+PN   + SLV    +      G+ +H   
Sbjct: 286 TWTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWA 345

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            +    SD ++  +L+SMY +  RV    RVF   +   +  W+A+ +     E     L
Sbjct: 346 VRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDAL 405

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            +F +M  +  +PN+ T   +L A ++L+D+     +H +  K     +    T LV +Y
Sbjct: 406 GLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVY 465

Query: 299 DKSGCLEDAGVAFDSLA----NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
            K G LE A   F+ +     +KD+  + A+I+ Y   G+   AL+ F +M   G+  NE
Sbjct: 466 SKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNE 525

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS---TALVAMYAKCGSIDDAEAV 411
            T  S LN CS    +  G  L    ++  H   +  S   T +V +  + G +D+A  +
Sbjct: 526 ITFTSALNACSHSGLVEEGLTLFRFMLE--HYKTLARSNHYTCIVDLLGRAGRLDEAYNL 583

Query: 412 FKGSALRDTAS-WNMMIGGYVKH---GLGEKA 439
                   T++ W  ++   V H    LGE A
Sbjct: 584 ITTIPFEPTSTVWGALLAACVTHENVQLGEMA 615


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 194/600 (32%), Positives = 298/600 (49%), Gaps = 88/600 (14%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A+ +F  MPE +VVSWNA+L+GYA++G  ++   +F  M        K S+S    G
Sbjct: 46  LRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMP------CKNSIS--WNG 97

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCS-LVDMYSKCGLADNALKVFYRIKDPDVVA 119
              + Y++ G++  A  +    A  + +S + ++  Y K     +A  +F R+ + D V+
Sbjct: 98  ML-AAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVS 156

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  +I+   Q G   EA ++F    ES V+                              
Sbjct: 157 WNTMISGYAQNGELLEAQRLFE---ESPVR------------------------------ 183

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
                 D     A+VS Y++NG +    RVF+ +  ++SVSWNA+ + +   +  DQ   
Sbjct: 184 ------DVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARE 237

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F  M                  C ++S                         +++  Y 
Sbjct: 238 LFEAM-----------------PCQNVSS----------------------WNTMITGYA 258

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           ++G +  A   FD +  +D  ++ AII  YAQ+G  E AL  F +M+ +G + N  T  S
Sbjct: 259 QNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTS 318

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L+ C+ +A L  G+ +H   VK G     +V  AL+ MY KCG+IDDA  VF+G   ++
Sbjct: 319 TLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKE 378

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SWN MI GY +HG G++AL  F  M   G +PD++T V VLSACSH GL+++G ++F 
Sbjct: 379 VVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFY 438

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           S+ + YGIT   KH+ CMID+LGRAG+  + +N +      P+A  W  LLGA   HGN 
Sbjct: 439 SMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNT 498

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           EL EK A+ + E+EP     YV  S++ A  GRW D   +R  +  +G+KK P  SW+EV
Sbjct: 499 ELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEV 558


>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Brachypodium distachyon]
          Length = 689

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 178/536 (33%), Positives = 280/536 (52%), Gaps = 7/536 (1%)

Query: 68  KAGQVVHAMAIRL-GCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           + G+  HA A+RL    L  F+   LV++YSK  L   A        +P VV++ A I+ 
Sbjct: 26  RLGRAAHARALRLLSPGLPPFICAHLVNLYSKLDLPAAAASALASDPNPTVVSFTAFISG 85

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC---GESIHAVICKYGF 183
             Q      A   F  M    ++PN F   S  +A       RC   G  IHA+  ++G+
Sbjct: 86  AAQHARPLAALSAFAAMLRVGLRPNDFTFPSAFKAAA-CAPPRCSTVGPQIHALALRFGY 144

Query: 184 -ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
              D  V  A + MY + G +    R+FE + +++ ++WNA+ +       P +  + ++
Sbjct: 145 LPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAVIDGRPLETFKAYF 204

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            +   G  PN+ +      AC+    +  G+Q H   +    D +  V  ++VD Y K  
Sbjct: 205 GLREAGGMPNVVSVCAFFNACAGAMFLSLGEQFHGFVVTCGFDMDVSVSNAMVDFYGKCR 264

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
           C   A   FD +  ++  ++ ++I +YAQ G  E AL  +   R  G +  +F ++S L 
Sbjct: 265 CAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMGARNTGEEPTDFMVSSVLT 324

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+ +  L  GR LH++AV++    ++FV++ALV MY KCG ++DAE VF     R+  +
Sbjct: 325 TCAGLLGLNFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQVFLDMPERNLVT 384

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYV-PDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           WN MIGGY   G  + AL  F  M+  G   P+ IT V V++ACS  GL ++G + F ++
Sbjct: 385 WNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPNHITLVNVITACSRGGLTKDGYELFDTM 444

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
           ++ +G+ P  +H+AC++D+LGRAG        I    + P+  VW  LLGAC  HG  EL
Sbjct: 445 RERFGVEPRTEHYACVVDLLGRAGMEERAYEIIQRMPMRPSISVWGALLGACKMHGKTEL 504

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
               +EKL EL+P+   N+V  S++ A+ GRW + + VR  + + GIKKEP CSWI
Sbjct: 505 GRIASEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKKEPGCSWI 560



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 126/263 (47%), Gaps = 1/263 (0%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           LA+R+F+ MP  NV++WNA++      G   +    +  +++     +  S+       A
Sbjct: 167 LARRLFEEMPNRNVIAWNAVMTNAVIDGRPLETFKAYFGLREAGGMPNVVSVCAFFNACA 226

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
            + ++  G+  H   +  G  +D  +S ++VD Y KC  A  A  VF  ++  + V+W +
Sbjct: 227 GAMFLSLGEQFHGFVVTCGFDMDVSVSNAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCS 286

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I    Q G  ++A  ++   R +  +P  F+++S++           G ++HAV  +  
Sbjct: 287 MIVAYAQHGAEEDALAVYMGARNTGEEPTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSC 346

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            +++  V +ALV MY + G V    +VF  +  ++ V+WNA+   +         L +F 
Sbjct: 347 IDANIFVASALVDMYGKCGGVEDAEQVFLDMPERNLVTWNAMIGGYAHIGDAQNALAVFD 406

Query: 243 QMLLK-GFKPNMCTFIVILKACS 264
            M+   G  PN  T + ++ ACS
Sbjct: 407 AMIRSGGTSPNHITLVNVITACS 429



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 3/134 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLK 59
           +E A++VF  MPE N+V+WNA++ GYA  GD Q  + +F +M +      +  +L  V+ 
Sbjct: 367 VEDAEQVFLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPNHITLVNVIT 426

Query: 60  GFANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDV 117
             +  G  K G ++   M  R G          +VD+  + G+ + A ++  R+   P +
Sbjct: 427 ACSRGGLTKDGYELFDTMRERFGVEPRTEHYACVVDLLGRAGMEERAYEIIQRMPMRPSI 486

Query: 118 VAWGAIITCLDQQG 131
             WGA++      G
Sbjct: 487 SVWGALLGACKMHG 500


>gi|48475127|gb|AAT44196.1| hypothetical protein, contains pentatricopeptide (PPR) repeat
           [Oryza sativa Japonica Group]
 gi|51854327|gb|AAU10708.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 634

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 189/580 (32%), Positives = 298/580 (51%), Gaps = 14/580 (2%)

Query: 36  MHLFCSMKDMEKKFSK---FSLSTVLK---GFANSGYIKAGQVVHAMAIRLGCALDKFLS 89
           M LF  ++      +    F LS V K     A++ ++     +HA A+R       F++
Sbjct: 1   MALFSRLRASSPPLAPADPFVLSLVFKSCAAAADARFLPHAASLHAFAVRSSAVSSVFVA 60

Query: 90  CSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK 149
            +L D+Y+K G    ALKVF  +   +VV+W  ++  L + G   EA + F+ MR S V 
Sbjct: 61  TALADVYAKAGCLGLALKVFDEMPHKNVVSWTTLVASLTRAGRRHEALRRFSEMRASGVH 120

Query: 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRV 209
            + +   + + A  + G    G  +HA   K G +S   V N L ++Y     V      
Sbjct: 121 CDSYAYAAALTACADAGLLSRGREVHAFCAKLGLDSTPYVANTLATLYARCSDVDRALAA 180

Query: 210 FEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK----GFKPNMCTFIVILKACSS 265
              +  +D  +W  + S +       + +  F +ML +       PN  T+  ++ AC+ 
Sbjct: 181 VSRMGTRDVAAWTTVISAYVQTGRAKEAIEAFVRMLREESSVAASPNEYTYAAVIAACAD 240

Query: 266 LSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS-GCLEDAGVAFDSLANKDLFAYTA 324
           ++ V  G+QLHA   +        V  SLV +Y ++ GCL  A   F     KD+ +++A
Sbjct: 241 IAWVCLGEQLHAQAARKGFACARSVANSLVTLYTRAAGCLSAADAVFRESVVKDVVSWSA 300

Query: 325 IITSYAQAGEAEMALKCFRKMRLEG--IKSNEFTLASCLNGCSPVATLANGRLLHSIAVK 382
           II+ YAQ G AE A   FR+MR      + NEFTLAS L+ C+  A+L  GR LH++AV 
Sbjct: 301 IISGYAQEGLAEDAFALFREMRHHSGCPRPNEFTLASLLSVCATAASLDAGRQLHTLAVA 360

Query: 383 TGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEA 442
            G      + +AL+ MY K GS+ DA+ VF      D  SW  MI GY +HG  +KALE 
Sbjct: 361 AGLEHHAMIRSALIDMYGKSGSMLDADIVFSHRVKDDVVSWTAMIVGYAEHGHSKKALEL 420

Query: 443 FRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILG 502
           F+ M   G  PD +TF+ VL+AC H G +E G ++ + + +IYG+ P  +H+ C++D+LG
Sbjct: 421 FQEMCHVGLKPDHVTFIGVLNACCHAGEVELGLRYLNEMNQIYGLYPAKEHYGCVVDLLG 480

Query: 503 RAGKFTEIENFITETKLTP-NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYV 561
           RAG+  E E  I +      + +VW +LL AC+  G  E  +K AE+ +E EP     +V
Sbjct: 481 RAGRINEAEELIGKIAANERDGVVWTSLLRACAARGEEETGKKAAERAMEAEPWGAGAHV 540

Query: 562 FPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
             +++ A++G+W++ +  R ++  +G+ K    S I V G
Sbjct: 541 AMANLYASKGQWHEAAQERHMMKQKGVVKGAGWSSITVGG 580



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 125/452 (27%), Positives = 213/452 (47%), Gaps = 13/452 (2%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           LA +VF  MP  NVVSW  L+     +G   + +  F  M+        ++ +  L   A
Sbjct: 75  LALKVFDEMPHKNVVSWTTLVASLTRAGRRHEALRRFSEMRASGVHCDSYAYAAALTACA 134

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           ++G +  G+ VHA   +LG     +++ +L  +Y++C   D AL    R+   DV AW  
Sbjct: 135 DAGLLSRGREVHAFCAKLGLDSTPYVANTLATLYARCSDVDRALAAVSRMGTRDVAAWTT 194

Query: 123 IITCLDQQGCCQEAAKIF-NLMRESS---VKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +I+   Q G  +EA + F  ++RE S     PN++   +++ A  +      GE +HA  
Sbjct: 195 VISAYVQTGRAKEAIEAFVRMLREESSVAASPNEYTYAAVIAACADIAWVCLGEQLHAQA 254

Query: 179 CKYGFESDTLVGNALVSMYME-NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
            + GF     V N+LV++Y    G +S    VF     +D VSW+A+ S +      +  
Sbjct: 255 ARKGFACARSVANSLVTLYTRAAGCLSAADAVFRESVVKDVVSWSAIISGYAQEGLAEDA 314

Query: 238 LRIFYQMLLKG--FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
             +F +M       +PN  T   +L  C++ + +  G+QLH   +   L+ + ++ ++L+
Sbjct: 315 FALFREMRHHSGCPRPNEFTLASLLSVCATAASLDAGRQLHTLAVAAGLEHHAMIRSALI 374

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
           DMY KSG + DA + F      D+ ++TA+I  YA+ G ++ AL+ F++M   G+K +  
Sbjct: 375 DMYGKSGSMLDADIVFSHRVKDDVVSWTAMIVGYAEHGHSKKALELFQEMCHVGLKPDHV 434

Query: 356 TLASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
           T    LN C     +  G R L+ +    G          +V +  + G I++AE +   
Sbjct: 435 TFIGVLNACCHAGEVELGLRYLNEMNQIYGLYPAKEHYGCVVDLLGRAGRINEAEELIGK 494

Query: 415 SAL--RDTASWNMMIGGYVKHG---LGEKALE 441
            A   RD   W  ++      G    G+KA E
Sbjct: 495 IAANERDGVVWTSLLRACAARGEEETGKKAAE 526



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 113/231 (48%), Gaps = 7/231 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDME--KKFSKFSLSTVL 58
           +  A  VF+     +VVSW+A+++GYA+ G  +    LF  M+      + ++F+L+++L
Sbjct: 280 LSAADAVFRESVVKDVVSWSAIISGYAQEGLAEDAFALFREMRHHSGCPRPNEFTLASLL 339

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF-YRIKDPDV 117
              A +  + AG+ +H +A+  G      +  +L+DMY K G   +A  VF +R+KD DV
Sbjct: 340 SVCATAASLDAGRQLHTLAVAAGLEHHAMIRSALIDMYGKSGSMLDADIVFSHRVKD-DV 398

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG-ESIHA 176
           V+W A+I    + G  ++A ++F  M    +KP+      ++ A    G+   G   ++ 
Sbjct: 399 VSWTAMIVGYAEHGHSKKALELFQEMCHVGLKPDHVTFIGVLNACCHAGEVELGLRYLNE 458

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA--HQDSVSWNALF 225
           +   YG          +V +    GR++    +   IA   +D V W +L 
Sbjct: 459 MNQIYGLYPAKEHYGCVVDLLGRAGRINEAEELIGKIAANERDGVVWTSLL 509


>gi|449460752|ref|XP_004148109.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Cucumis sativus]
          Length = 784

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 177/601 (29%), Positives = 318/601 (52%), Gaps = 14/601 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYA---ESGDGQKVMHLFCSMKDMEKKFSKFSLSTV 57
           +E A  +F  +   +VV+W AL+ GY    ESG G K +       +M +     +  T+
Sbjct: 190 VESASIMFSEITVKDVVTWTALIVGYVQNNESGRGLKCLF------EMHRIGGTPNYKTI 243

Query: 58  LKGFANSGYIKA---GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
             GF     + A   G+ +H +A++ G    + +  +++ MYS+CG  + A + F ++  
Sbjct: 244 GSGFQACVDLDALVEGKCLHGLALKNGFLCFEVVKSTILSMYSRCGSPEEAYRCFCKLDQ 303

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
            D+++W +II    + G   E   +F  M+ S + P++ V++ ++     +     G++ 
Sbjct: 304 KDLISWTSIIAVHSKFGLMSECLHLFWEMQASEIIPDEIVISCMLMGFGNSDRIFEGKAF 363

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           HA I K       +  NAL+SMY + G +   +++F +  H+ S  W+ +   + +    
Sbjct: 364 HARILKQCCALSGITHNALLSMYCKFGHLGTANKIFHSF-HKSSEDWSTMILGYSNMGQK 422

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
           ++ +    +MLL G +P++ + + ++ +CS +  +  G+ +H + IK+S+  N  V  SL
Sbjct: 423 EKCISFLREMLLLGREPDLNSLVSVISSCSQVGAINIGRSIHCYAIKNSIIENVSVANSL 482

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           +DMY KSG +      F     +D+ ++  +I+SY Q+G    A+  F KM  E +  N+
Sbjct: 483 MDMYGKSGHVTATWRIFHRTLQRDVISWNTLISSYKQSGILAEAIILFDKMVKEKVYPNK 542

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            T    L+ C+ +A+L  G  +H    + G   ++ + TAL+ MYAKCG ++ +  +F  
Sbjct: 543 VTCIIVLSACAHLASLDEGEKIHQYIKENGFESNITIRTALIDMYAKCGELETSRKLFNS 602

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
           +  RD   WN+MI  Y  HG  E A+E F++M +    P+  TF+ +LSAC+H G + EG
Sbjct: 603 TEERDVILWNVMISNYGMHGHVESAMEIFQLMEESNIKPNAQTFLSLLSACNHTGHVLEG 662

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
           +  F  ++K YGI P++KH+A +ID+LGR+G     E  +    +TP+  VW +LL AC 
Sbjct: 663 RHLFDRMQK-YGIEPSLKHYASIIDLLGRSGSLEAAEALVLSMPITPDGTVWGSLLSACK 721

Query: 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSC 594
            H   E+  + A   +E +PK +  Y+  SD+ +  GRW++   VR ++  +G++K    
Sbjct: 722 IHNEFEVGVRLARYAIESDPKNDGYYIILSDLYSCLGRWDEVEKVRDMMKKRGVEKRAGW 781

Query: 595 S 595
           S
Sbjct: 782 S 782



 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 143/592 (24%), Positives = 263/592 (44%), Gaps = 5/592 (0%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
            +  +F+ +   ++  WN+++  +  +GD Q+    +  M+      ++F++  V+   A
Sbjct: 90  FSTHLFRLIHSKDIFLWNSIIQSHFSNGDYQRAFDFYLQMRASSSLPNQFTVPMVVSTCA 149

Query: 63  NSGYIKAGQVVHAMAIRLGCAL-DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
                  G  +H +  +LG  + +  +  S + MYSKCG  ++A  +F  I   DVV W 
Sbjct: 150 ELMMFNHGMNIHGLTSKLGLFVGNSAIGSSFIYMYSKCGHVESASIMFSEITVKDVVTWT 209

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           A+I    Q        K    M      PN   + S  +A  +      G+ +H +  K 
Sbjct: 210 ALIVGYVQNNESGRGLKCLFEMHRIGGTPNYKTIGSGFQACVDLDALVEGKCLHGLALKN 269

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           GF    +V + ++SMY   G      R F  +  +D +SW ++ +    +    + L +F
Sbjct: 270 GFLCFEVVKSTILSMYSRCGSPEEAYRCFCKLDQKDLISWTSIIAVHSKFGLMSECLHLF 329

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
           ++M      P+      +L    +   +  GK  HA  +K     + +   +L+ MY K 
Sbjct: 330 WEMQASEIIPDEIVISCMLMGFGNSDRIFEGKAFHARILKQCCALSGITHNALLSMYCKF 389

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G L  A   F S  +K    ++ +I  Y+  G+ E  +   R+M L G + +  +L S +
Sbjct: 390 GHLGTANKIFHSF-HKSSEDWSTMILGYSNMGQKEKCISFLREMLLLGREPDLNSLVSVI 448

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           + CS V  +  GR +H  A+K   + ++ V+ +L+ MY K G +     +F  +  RD  
Sbjct: 449 SSCSQVGAINIGRSIHCYAIKNSIIENVSVANSLMDMYGKSGHVTATWRIFHRTLQRDVI 508

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SWN +I  Y + G+  +A+  F  M+ E   P+++T ++VLSAC+H+  ++EG+K    I
Sbjct: 509 SWNTLISSYKQSGILAEAIILFDKMVKEKVYPNKVTCIIVLSACAHLASLDEGEKIHQYI 568

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
           K+  G    I     +ID+  + G+          T+   + ++W  ++     HG++E 
Sbjct: 569 KE-NGFESNITIRTALIDMYAKCGELETSRKLFNSTE-ERDVILWNVMISNYGMHGHVE- 625

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPS 593
              +  +L+E      +   F S +SA     +   G       Q    EPS
Sbjct: 626 SAMEIFQLMEESNIKPNAQTFLSLLSACNHTGHVLEGRHLFDRMQKYGIEPS 677



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 137/496 (27%), Positives = 224/496 (45%), Gaps = 13/496 (2%)

Query: 74  HAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCC 133
           H++ I  G + + F +  L+  Y+       +  +F  I   D+  W +II      G  
Sbjct: 60  HSLIITTGNSNNVFFATKLMAFYAYHRKPAFSTHLFRLIHSKDIFLWNSIIQSHFSNGDY 119

Query: 134 QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG-FESDTLVGNA 192
           Q A   +  MR SS  PNQF +  +V    E      G +IH +  K G F  ++ +G++
Sbjct: 120 QRAFDFYLQMRASSSLPNQFTVPMVVSTCAELMMFNHGMNIHGLTSKLGLFVGNSAIGSS 179

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
            + MY + G V   S +F  I  +D V+W AL   +       +GL+  ++M   G  PN
Sbjct: 180 FIYMYSKCGHVESASIMFSEITVKDVVTWTALIVGYVQNNESGRGLKCLFEMHRIGGTPN 239

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
             T     +AC  L  +  GK LH   +K+      VV ++++ MY + G  E+A   F 
Sbjct: 240 YKTIGSGFQACVDLDALVEGKCLHGLALKNGFLCFEVVKSTILSMYSRCGSPEEAYRCFC 299

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
            L  KDL ++T+II  +++ G     L  F +M+   I  +E  ++  L G      +  
Sbjct: 300 KLDQKDLISWTSIIAVHSKFGLMSECLHLFWEMQASEIIPDEIVISCMLMGFGNSDRIFE 359

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
           G+  H+  +K    L      AL++MY K G +  A  +F  S  + +  W+ MI GY  
Sbjct: 360 GKAFHARILKQCCALSGITHNALLSMYCKFGHLGTANKIFH-SFHKSSEDWSTMILGYSN 418

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTI 491
            G  EK +   R ML  G  PD  + V V+S+CS +G I  G+  H  +IK    I   +
Sbjct: 419 MGQKEKCISFLREMLLLGREPDLNSLVSVISSCSQVGAINIGRSIHCYAIKN--SIIENV 476

Query: 492 KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551
                ++D+ G++G  T        T L  + + W  L+ +    G +      AE ++ 
Sbjct: 477 SVANSLMDMYGKSGHVTATWRIFHRT-LQRDVISWNTLISSYKQSGIL------AEAII- 528

Query: 552 LEPKMESNYVFPSDIS 567
           L  KM    V+P+ ++
Sbjct: 529 LFDKMVKEKVYPNKVT 544


>gi|147834193|emb|CAN75306.1| hypothetical protein VITISV_040403 [Vitis vinifera]
          Length = 826

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 186/585 (31%), Positives = 302/585 (51%), Gaps = 2/585 (0%)

Query: 15  NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVH 74
           NV+SW + ++   +    +  + LF  M   E++ +  ++ +V++  +  G     +V+ 
Sbjct: 53  NVISWTSKISSLVKQNQSELAVGLFKMMLMTEQRPNHVTVLSVIRAISGLGLEDMMRVIC 112

Query: 75  AMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQ 134
              I+LG   +  ++ +L+  YS   +     K+F +    D+V W A+++   + G   
Sbjct: 113 GSVIKLGFESEVSVATALIGFYSDYDMGI-VWKIFNQTPIKDLVLWSAMVSACVKSGQYG 171

Query: 135 EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALV 194
           EA +IF  M+   V+PN   + S++ A    G    G+ IH    K  F   T V N+LV
Sbjct: 172 EAFEIFRAMQYDGVEPNHVSIVSILPACANVGALLFGKEIHGFSIKKMFHPLTNVHNSLV 231

Query: 195 SMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMC 254
            MY +         VF+ I  +D +SW  +     + + P +  + F +M    F  +  
Sbjct: 232 DMYAKCRNFKASMLVFDQILEKDLISWTTIIRGCIENDCPREAFKAFSRMQFSCFGADET 291

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
               ++ A     +  FG   H   +K+ L     +GT+L+ MY K G LE A + FD L
Sbjct: 292 IVQDLIVAIIQADEHKFGIAFHGFLLKNGLLAFVSIGTALLQMYAKFGELESAIIVFDQL 351

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
             KD  +++A+I+ +A +     AL+ F++M+    + NE T  S L  CS +     G 
Sbjct: 352 NKKDYISWSAMISVHAHSRHPYNALETFKQMQSTDERPNEITFVSLLQACSLIGAQELGE 411

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
            + + A K G+L + F+S+AL+ +Y K G I+   A+F     +D   W+ MI GY  +G
Sbjct: 412 SIQAHATKAGYLSNAFLSSALIDLYCKFGRINQGRAIFNEIPTKDLVCWSSMINGYGLNG 471

Query: 435 LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHF 494
            G++ALE F  ML  G  P+E+ F+ VLSACSH GL  EG   FSS+++ YGI P + H+
Sbjct: 472 CGDEALETFSNMLACGVKPNEVVFISVLSACSHCGLEHEGWSCFSSMEQKYGIIPKLPHY 531

Query: 495 ACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC-SWHGNIELDEKDAEKLLELE 553
           ACM+D++ R G       F+ +  + P+  +W  LL  C S HG+IE+ E  AE+L+ L+
Sbjct: 532 ACMVDLISRRGNIEGALQFVNKMPMEPDKRIWGALLAGCRSTHGSIEIAELVAERLIGLD 591

Query: 554 PKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           P+  S YV  S++ A QGRW D   +R L+  +G+KKE   S IE
Sbjct: 592 PQNTSYYVILSNLYAEQGRWGDVERLRKLVDEKGLKKEMGYSMIE 636



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 126/467 (26%), Positives = 224/467 (47%), Gaps = 7/467 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M +  ++F   P  ++V W+A+++   +SG   +   +F +M+    + +  S+ ++L  
Sbjct: 139 MGIVWKIFNQTPIKDLVLWSAMVSACVKSGQYGEAFEIFRAMQYDGVEPNHVSIVSILPA 198

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            AN G +  G+ +H  +I+        +  SLVDMY+KC     ++ VF +I + D+++W
Sbjct: 199 CANVGALLFGKEIHGFSIKKMFHPLTNVHNSLVDMYAKCRNFKASMLVFDQILEKDLISW 258

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             II    +  C +EA K F+ M+ S    ++ ++  L+ A  +  + + G + H  + K
Sbjct: 259 TTIIRGCIENDCPREAFKAFSRMQFSCFGADETIVQDLIVAIIQADEHKFGIAFHGFLLK 318

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G  +   +G AL+ MY + G +     VF+ +  +D +SW+A+ S       P   L  
Sbjct: 319 NGLLAFVSIGTALLQMYAKFGELESAIIVFDQLNKKDYISWSAMISVHAHSRHPYNALET 378

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QM     +PN  TF+ +L+ACS +     G+ + AH  K     N  + ++L+D+Y K
Sbjct: 379 FKQMQSTDERPNEITFVSLLQACSLIGAQELGESIQAHATKAGYLSNAFLSSALIDLYCK 438

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +      F+ +  KDL  ++++I  Y   G  + AL+ F  M   G+K NE    S 
Sbjct: 439 FGRINQGRAIFNEIPTKDLVCWSSMINGYGLNGCGDEALETFSNMLACGVKPNEVVFISV 498

Query: 361 LNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA-EAVFKGSALR 418
           L+ CS       G     S+  K G +  +     +V + ++ G+I+ A + V K     
Sbjct: 499 LSACSHCGLEHEGWSCFSSMEQKYGIIPKLPHYACMVDLISRRGNIEGALQFVNKMPMEP 558

Query: 419 DTASWNMMIGG-YVKHGLGEKA-LEAFRMMLDEGYVPDEITFVVVLS 463
           D   W  ++ G    HG  E A L A R++   G  P   ++ V+LS
Sbjct: 559 DKRIWGALLAGCRSTHGSIEIAELVAERLI---GLDPQNTSYYVILS 602


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 186/593 (31%), Positives = 301/593 (50%), Gaps = 26/593 (4%)

Query: 12  PELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKK-FSKFSLSTVLKGFANSGYIKAG 70
           PE N   +N L++ Y  +   Q   + +  M+  +      F L ++LK  A +     G
Sbjct: 51  PEAN---YNLLISSYTNNHLPQASFNCYLHMRSNDAAALDNFILPSLLKACAQASSGDLG 107

Query: 71  QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
           + +H  A + G A D F+  +L++MY KCG   +A  VF ++ + DVV+W  ++ C  + 
Sbjct: 108 RELHGFAQKNGFASDVFVCNALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRS 167

Query: 131 GCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK-YGFES-DTL 188
               EA ++   M+   VK +   L SL+       D + G ++H  I +  G E  +  
Sbjct: 168 KAFGEALRLVREMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVS 227

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG 248
           +  AL+ MY + G ++   R+F+ ++ +  VSW  + +        D+G + F +ML + 
Sbjct: 228 MTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEK 287

Query: 249 FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
             PN  T + ++  C  +  +  GK  HA+ +++    +  + T+L+DMY K G +  A 
Sbjct: 288 LFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYAR 347

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
             F+ +  KD+  ++ +I++YA     +     F +M    +K N  T+ S L+ C+   
Sbjct: 348 ALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLSLCAEAG 407

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
            L  G+  H+   + G  +D+ + TAL+ MYAKCG +  A ++F  +  RD   WN M+ 
Sbjct: 408 ALDLGKWTHAYINRHGLEVDVILETALINMYAKCGDVTIARSLFNEAMQRDIRMWNTMMA 467

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGIT 488
           G+  HG G++ALE F  M   G  P++ITFV +  ACSH GL+E                
Sbjct: 468 GFSMHGCGKEALELFSEMESHGVEPNDITFVSIFHACSHSGLME---------------- 511

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEK 548
               H+ C++D+LGRAG   E  N I    + PN ++W  LL AC  H N+ L E  A K
Sbjct: 512 ----HYGCLVDLLGRAGHLDEAHNIIENMPMRPNTIIWGALLAACKLHKNLALGEVAARK 567

Query: 549 LLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           +LEL+P+     V  S+I A+  RWND + VR  +S  G+KKEP  SWIEV G
Sbjct: 568 ILELDPQNCGYSVLKSNIYASAKRWNDVTSVREAMSHSGMKKEPGLSWIEVSG 620



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 122/442 (27%), Positives = 210/442 (47%), Gaps = 25/442 (5%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF  MPE +VVSW  +L  Y  S    + + L   M+ +  K S  +L +++  F N
Sbjct: 142 ARLVFDQMPERDVVSWTTMLGCYVRSKAFGEALRLVREMQFVGVKLSGVALISLIAVFGN 201

Query: 64  SGYIKAGQVVHAMAIR-LGC-ALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
              +K+G+ VH   +R +G   ++  ++ +L+DMY K G   +A ++F R+    VV+W 
Sbjct: 202 LLDMKSGRAVHGYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWT 261

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            +I    +     E AK FN M E  + PN+  L SL+      G    G+  HA + + 
Sbjct: 262 VMIAGCIRSCRLDEGAKNFNRMLEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRN 321

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           GF     +  AL+ MY + G+V Y   +F  +  +D   W+ L S +      DQ   +F
Sbjct: 322 GFGMSLALVTALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLF 381

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +ML    KPN  T + +L  C+    +  GK  HA+  +H L+ + ++ T+L++MY K 
Sbjct: 382 VEMLNNDVKPNNVTMVSLLSLCAEAGALDLGKWTHAYINRHGLEVDVILETALINMYAKC 441

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G +  A   F+    +D+  +  ++  ++  G  + AL+ F +M   G++ N+ T  S  
Sbjct: 442 GDVTIARSLFNEAMQRDIRMWNTMMAGFSMHGCGKEALELFSEMESHGVEPNDITFVSIF 501

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DT 420
           + CS      +G + H      G L+D+           + G +D+A  + +   +R +T
Sbjct: 502 HACS-----HSGLMEH-----YGCLVDLL---------GRAGHLDEAHNIIENMPMRPNT 542

Query: 421 ASWNMMIGGYVKH---GLGEKA 439
             W  ++     H    LGE A
Sbjct: 543 IIWGALLAACKLHKNLALGEVA 564


>gi|296085266|emb|CBI28998.3| unnamed protein product [Vitis vinifera]
          Length = 732

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 180/601 (29%), Positives = 309/601 (51%), Gaps = 7/601 (1%)

Query: 6   RVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN-- 63
           +VF  MP  N+VSW  +++G  ++G+ +  + ++  M       ++F+L  V K  A   
Sbjct: 132 KVFGEMPMKNLVSWTLVVSGAVQNGEFEMGLGVYLEMIRTGLVPNEFALGCVTKACAALG 191

Query: 64  ----SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
                G +  G+ +H + I+        +  SL+DMY K G    ALKVF R++D D+++
Sbjct: 192 GCLVVGNLNFGRQIHGLIIQSEVGFSTAVMNSLMDMYFKNGGGLYALKVFDRLQDKDIIS 251

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  +   L Q    +E  + F+ +  + +KPN    + L R   E  D   G   H +  
Sbjct: 252 WNTVFAGLSQGDDAREIGRFFHKLMLTGLKPNCVTFSILFRFCGEALDLVSGLQFHCLAF 311

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           ++G   +  V ++L++M+   G +     VF++   +   + N + S +       + L 
Sbjct: 312 RFGISDEASVTSSLINMFSRCGAMRMACLVFDSAPFKSIHTCNEMISGYNLNCHNAEALN 371

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F  +   G + + CTF   L+AC    +   G+Q+H   +K        V +SL+  Y 
Sbjct: 372 LFCNLNGLGLEADECTFSSALEACFRTENQKLGRQMHGTIVKSGFASQGYVCSSLLKCYV 431

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
             G L+D+   F+ +   DL ++ A+I++    G +  A+    +++  G K +EF   S
Sbjct: 432 GFGLLDDSFEFFNGVERLDLVSWGAMISALVHKGYSSEAIGLLNRLKEAGGKPDEFIFGS 491

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF-KGSALR 418
             N C+ +A     + +HS+ VK G+   +FV++A++  YAKCG I++A  VF + S  R
Sbjct: 492 IFNCCAGIAAYRQTKSVHSLVVKMGYEAHVFVASAVIDAYAKCGDIENARRVFDQTSRFR 551

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D   +N M+  Y  HGL  +A+E F  M      P + TFV V+SACSH+GL+E+G   F
Sbjct: 552 DVILFNTMVMAYAHHGLVREAVETFEKMKLATLEPSQATFVSVISACSHLGLVEQGDIFF 611

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            S+   YG+ P+  ++ C++D+  R G   + ++ I      P   +W +LL  C  HGN
Sbjct: 612 KSMNLDYGMDPSPDNYGCLVDLFSRNGFLEDAKHIIETMPFPPWPAIWRSLLNGCRIHGN 671

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
            EL E  A+KLL+L P+ ++ YV  S + + +G W+D + VR  +  +G+ K+P CSWIE
Sbjct: 672 KELGEWAAKKLLQLVPENDAAYVLLSKVYSEEGSWSDAAKVRKGMIERGLWKDPGCSWIE 731

Query: 599 V 599
           +
Sbjct: 732 I 732



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 142/524 (27%), Positives = 239/524 (45%), Gaps = 12/524 (2%)

Query: 53  SLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI 112
           +LST L   ANS  I  G  +HA  I+LG   D F   +L+ MY+KCG     LKVF  +
Sbjct: 78  ALSTALTHSANSKCILLGSQIHAQIIKLGFCNDIFSQNNLIRMYTKCGFLAGGLKVFGEM 137

Query: 113 KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTE------TG 166
              ++V+W  +++   Q G  +    ++  M  + + PN+F L  + +A          G
Sbjct: 138 PMKNLVSWTLVVSGAVQNGEFEMGLGVYLEMIRTGLVPNEFALGCVTKACAALGGCLVVG 197

Query: 167 DQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS 226
           +   G  IH +I +      T V N+L+ MY +NG   Y  +VF+ +  +D +SWN +F+
Sbjct: 198 NLNFGRQIHGLIIQSEVGFSTAVMNSLMDMYFKNGGGLYALKVFDRLQDKDIISWNTVFA 257

Query: 227 RFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDG 286
                +   +  R F++++L G KPN  TF ++ + C    D+  G Q H    +  +  
Sbjct: 258 GLSQGDDAREIGRFFHKLMLTGLKPNCVTFSILFRFCGEALDLVSGLQFHCLAFRFGISD 317

Query: 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR 346
              V +SL++M+ + G +  A + FDS   K +     +I+ Y        AL  F  + 
Sbjct: 318 EASVTSSLINMFSRCGAMRMACLVFDSAPFKSIHTCNEMISGYNLNCHNAEALNLFCNLN 377

Query: 347 LEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSID 406
             G++++E T +S L  C        GR +H   VK+G     +V ++L+  Y   G +D
Sbjct: 378 GLGLEADECTFSSALEACFRTENQKLGRQMHGTIVKSGFASQGYVCSSLLKCYVGFGLLD 437

Query: 407 DAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
           D+   F G    D  SW  MI   V  G   +A+     + + G  PDE  F  + + C+
Sbjct: 438 DSFEFFNGVERLDLVSWGAMISALVHKGYSSEAIGLLNRLKEAGGKPDEFIFGSIFNCCA 497

Query: 467 HMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVW 526
            +    + K   S + K+ G    +   + +ID   + G          +T    + +++
Sbjct: 498 GIAAYRQTKSVHSLVVKM-GYEAHVFVASAVIDAYAKCGDIENARRVFDQTSRFRDVILF 556

Query: 527 ENLLGACSWHGNIE--LDEKDAEKLLELEPKMESNYVFPSDISA 568
             ++ A + HG +   ++  +  KL  LEP   S   F S ISA
Sbjct: 557 NTMVMAYAHHGLVREAVETFEKMKLATLEP---SQATFVSVISA 597



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 103/463 (22%), Positives = 210/463 (45%), Gaps = 5/463 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A +VF  + + +++SWN +  G ++  D +++   F  +     K +  + S + +    
Sbjct: 237 ALKVFDRLQDKDIISWNTVFAGLSQGDDAREIGRFFHKLMLTGLKPNCVTFSILFRFCGE 296

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +  + +G   H +A R G + +  ++ SL++M+S+CG    A  VF       +     +
Sbjct: 297 ALDLVSGLQFHCLAFRFGISDEASVTSSLINMFSRCGAMRMACLVFDSAPFKSIHTCNEM 356

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+  +      EA  +F  +    ++ ++   +S + A   T +Q+ G  +H  I K GF
Sbjct: 357 ISGYNLNCHNAEALNLFCNLNGLGLEADECTFSSALEACFRTENQKLGRQMHGTIVKSGF 416

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            S   V ++L+  Y+  G +      F  +   D VSW A+ S         + + +  +
Sbjct: 417 ASQGYVCSSLLKCYVGFGLLDDSFEFFNGVERLDLVSWGAMISALVHKGYSSEAIGLLNR 476

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           +   G KP+   F  I   C+ ++     K +H+  +K   + +  V ++++D Y K G 
Sbjct: 477 LKEAGGKPDEFIFGSIFNCCAGIAAYRQTKSVHSLVVKMGYEAHVFVASAVIDAYAKCGD 536

Query: 304 LEDAGVAFDSLAN-KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
           +E+A   FD  +  +D+  +  ++ +YA  G    A++ F KM+L  ++ ++ T  S ++
Sbjct: 537 IENARRVFDQTSRFRDVILFNTMVMAYAHHGLVREAVETFEKMKLATLEPSQATFVSVIS 596

Query: 363 GCSPVATLANGRL-LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD-T 420
            CS +  +  G +   S+ +  G          LV ++++ G ++DA+ + +        
Sbjct: 597 ACSHLGLVEQGDIFFKSMNLDYGMDPSPDNYGCLVDLFSRNGFLEDAKHIIETMPFPPWP 656

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           A W  ++ G   HG  E    A + +L    VP+     V+LS
Sbjct: 657 AIWRSLLNGCRIHGNKELGEWAAKKLLQ--LVPENDAAYVLLS 697



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 160/309 (51%), Gaps = 2/309 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M +A  VF S P  ++ + N +++GY  +    + ++LFC++  +  +  + + S+ L+ 
Sbjct: 335 MRMACLVFDSAPFKSIHTCNEMISGYNLNCHNAEALNLFCNLNGLGLEADECTFSSALEA 394

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              +   K G+ +H   ++ G A   ++  SL+  Y   GL D++ + F  ++  D+V+W
Sbjct: 395 CFRTENQKLGRQMHGTIVKSGFASQGYVCSSLLKCYVGFGLLDDSFEFFNGVERLDLVSW 454

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
           GA+I+ L  +G   EA  + N ++E+  KP++F+  S+          R  +S+H+++ K
Sbjct: 455 GAMISALVHKGYSSEAIGLLNRLKEAGGKPDEFIFGSIFNCCAGIAAYRQTKSVHSLVVK 514

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH-QDSVSWNALFSRFQDYESPDQGLR 239
            G+E+   V +A++  Y + G +    RVF+  +  +D + +N +   +  +    + + 
Sbjct: 515 MGYEAHVFVASAVIDAYAKCGDIENARRVFDQTSRFRDVILFNTMVMAYAHHGLVREAVE 574

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ-LHAHTIKHSLDGNHVVGTSLVDMY 298
            F +M L   +P+  TF+ ++ ACS L  V  G     +  + + +D +      LVD++
Sbjct: 575 TFEKMKLATLEPSQATFVSVISACSHLGLVEQGDIFFKSMNLDYGMDPSPDNYGCLVDLF 634

Query: 299 DKSGCLEDA 307
            ++G LEDA
Sbjct: 635 SRNGFLEDA 643


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 177/529 (33%), Positives = 275/529 (51%), Gaps = 33/529 (6%)

Query: 105 ALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTE 164
           A+ VF  I++P+ ++W  +I           A  ++  M    + PN +    L ++  +
Sbjct: 31  AISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAK 90

Query: 165 TGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS---- 220
           +   + G+ IHA I KYG   D  V  +L+SMY +NG V    +VF+  +H+D VS    
Sbjct: 91  SKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAM 150

Query: 221 ---------------------------WNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
                                      WNA+ S + +     + L +F +M+    KP+ 
Sbjct: 151 ITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDE 210

Query: 254 CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
            T   +L  C+   +V  G+Q+H+    H    N  +  +L+D+Y K G +E A   F+ 
Sbjct: 211 STMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEG 270

Query: 314 LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG 373
           L  KD+ ++  +I  YA     + AL  F++M   G   N+ T+ S L  C+ +  +  G
Sbjct: 271 LQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIG 330

Query: 374 RLLHSIAVKT--GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV 431
           R +H    K   G + +  + T+L+ MYAKCG+I+ A  VF     +  +S N MI G+ 
Sbjct: 331 RWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFA 390

Query: 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI 491
            HG  + A +    M  +G  PD+ITFV +LSACSH GL + G+K F S+   Y I P +
Sbjct: 391 MHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKL 450

Query: 492 KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551
           +H+ CMID+LGR+G F E E  I    + P+ ++W +LL AC  H N+EL E  A+KL++
Sbjct: 451 EHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQKLMK 510

Query: 552 LEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           +EPK   +YV  S+I AT  RW+D + VR LL+ +G+KK P CS IE+D
Sbjct: 511 IEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEID 559



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 120/408 (29%), Positives = 203/408 (49%), Gaps = 35/408 (8%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A  VFKS+ E N +SWN ++ G+A S D    ++L+  M  +    + ++   + K 
Sbjct: 28  LPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKS 87

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF----YR----- 111
            A S   + G+ +HA  ++ G  +D  +  SL+ MY++ G+ ++A KVF    +R     
Sbjct: 88  CAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSY 147

Query: 112 ----------------------IKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK 149
                                 I   DVV+W A+I+   + G  +EA ++FN M +  VK
Sbjct: 148 TAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVK 207

Query: 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRV 209
           P++  + +++   T +G+   G  IH+ I  +GF S+  + NAL+ +Y + G +     +
Sbjct: 208 PDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGL 267

Query: 210 FEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDV 269
           FE + ++D +SWN L   +       + L +F +ML  G  PN  T + IL AC+ L  +
Sbjct: 268 FEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAI 327

Query: 270 GFGKQLHAHTIKHSLDG---NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
             G+ +H + I   L G   N  + TSL+DMY K G +E A   FD++ NK L +  A+I
Sbjct: 328 DIGRWIHVY-IDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMI 386

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
             +A  G A+ A     +M+ +GI+ ++ T    L+ CS       GR
Sbjct: 387 FGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGR 434



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 164/319 (51%), Gaps = 5/319 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A+++F  +P  +VVSWNA+++GYAE G  ++ + LF  M  M+ K  + +++TVL  
Sbjct: 160 MDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLST 219

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +SG ++ G+ +H+     G   +  L  +L+D+YSKCG  + A  +F  ++  DV++W
Sbjct: 220 CTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISW 279

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I         +EA  +F  M +    PN   + S++ A    G    G  IH  I K
Sbjct: 280 NTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDK 339

Query: 181 --YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
              G  ++T +  +L+ MY + G +   ++VF+ I ++   S NA+   F  +   D   
Sbjct: 340 KLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAF 399

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACS--SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            +  +M   G +P+  TF+ +L ACS   LSD+G  K   + T+ + ++        ++D
Sbjct: 400 DLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLG-RKIFKSMTLDYRIEPKLEHYGCMID 458

Query: 297 MYDKSGCLEDAGVAFDSLA 315
           +  +SG  ++A    +S+ 
Sbjct: 459 LLGRSGLFKEAEELINSMT 477


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 183/597 (30%), Positives = 305/597 (51%), Gaps = 58/597 (9%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF+ MP+ +++SWN +L+GY ++G+      LF  M + +      S + +L GFA 
Sbjct: 110 ARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDV----VSWNAMLSGFAQ 165

Query: 64  SGYIK-AGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           +G+++ A ++   M ++   + +  LS      Y + G  ++A ++F    D ++V+W  
Sbjct: 166 NGFVEEARKIFDQMLVKNEISWNGLLSA-----YVQNGRIEDARRLFDSKMDWEIVSWNC 220

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           ++    ++    +A  +F+ M          ++T   +    +  +R  E +        
Sbjct: 221 LMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPI------ 274

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
              D     A+VS +++NG +   +R+FE +  ++ VSWNA+ + +   +  ++   +F 
Sbjct: 275 --RDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFD 332

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           QM  +                                       N     ++V  Y + G
Sbjct: 333 QMPSR---------------------------------------NTSSWNTMVTGYAQCG 353

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            ++ A + FD +  +D  ++ A+I+ YAQ+G++E AL  F KM+ +G   N   LA  L+
Sbjct: 354 NIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALS 413

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+ +A L  G+ LH   VK G         AL+AMY KCGSI++A  VF+    +D  S
Sbjct: 414 SCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVS 473

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN MI GY +HG G++AL  F  M      PD++T V VLSACSH G +++G ++F+S+ 
Sbjct: 474 WNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMY 532

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           + YGIT   KH+ CMID+LGRAG+  E  N +      P+A  W  LLGA   HG+ EL 
Sbjct: 533 QNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELG 592

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           EK AEK+ E+EP     YV  S++ A  GRW +   +R+ +  +G+KK P  SW+E+
Sbjct: 593 EKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEI 649



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 108/459 (23%), Positives = 191/459 (41%), Gaps = 61/459 (13%)

Query: 112 IKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG 171
           I D D+V W   I+   ++G C+ A  +FN MR  S         +++          C 
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRST----VTYNAMISGYLSNNKFDCA 110

Query: 172 ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY 231
             +   +     + D +  N ++S Y++NG +S    +F  +  +D VSWNA+ S F   
Sbjct: 111 RKVFEKMP----DRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQN 166

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLH--------------- 276
              ++  +IF QML+K    N  ++  +L A      +   ++L                
Sbjct: 167 GFVEEARKIFDQMLVK----NEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLM 222

Query: 277 -AHTIKHSLDG-----------NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA 324
             +  K  LD            + +    ++  Y ++G L +A   F+ L  +D+FA+TA
Sbjct: 223 GGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTA 282

Query: 325 IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           +++ + Q G  + A + F +M     + NE +  + + G      +   R          
Sbjct: 283 MVSGFVQNGMLDEATRIFEEM----PEKNEVSWNAMIAGYVQSQQIEKAR---------- 328

Query: 385 HLLDMFVS------TALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEK 438
            L D   S        +V  YA+CG+ID A+ +F     RD  SW  MI GY + G  E+
Sbjct: 329 ELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEE 388

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMI 498
           AL  F  M  +G + +       LS+C+ +  +E GK+    + K    T  I   A ++
Sbjct: 389 ALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNA-LL 447

Query: 499 DILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
            + G+ G   E  + + E     + + W  ++   + HG
Sbjct: 448 AMYGKCGSIEEAFD-VFEDITEKDIVSWNTMIAGYARHG 485



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 161/368 (43%), Gaps = 43/368 (11%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A R+F+ MPE N VSWNA++ GY +S   +K   LF  M          S +T++ G
Sbjct: 293 LDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTS----SWNTMVTG 348

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                                              Y++CG  D A  +F  +   D ++W
Sbjct: 349 -----------------------------------YAQCGNIDQAKILFDEMPQRDCISW 373

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I+   Q G  +EA  +F  M+      N+  L   + +  E      G+ +H  + K
Sbjct: 374 AAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVK 433

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GF++  + GNAL++MY + G +     VFE I  +D VSWN + + +  +    + L +
Sbjct: 434 AGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALAL 493

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ-LHAHTIKHSLDGNHVVGTSLVDMYD 299
           F  M +   KP+  T + +L ACS    V  G +  ++    + +  N    T ++D+  
Sbjct: 494 FESMKMT-IKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLG 552

Query: 300 KSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFTL 357
           ++G L++A     S+    D   + A++ +    G+ E+  K   K+  +E   S  + L
Sbjct: 553 RAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVL 612

Query: 358 ASCLNGCS 365
            S L   S
Sbjct: 613 LSNLYAAS 620



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 18/158 (11%)

Query: 396 VAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE 455
           ++ Y + G  + A +VF G   R T ++N MI GY+ +   + A + F  M D     D 
Sbjct: 67  ISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDR----DL 122

Query: 456 ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT--IKHFACMIDILGRAGKFTEIENF 513
           I++ V+LS     G ++ G  + S+ + ++   P   +  +  M+    + G F E    
Sbjct: 123 ISWNVMLS-----GYVKNG--NLSAARALFNQMPEKDVVSWNAMLSGFAQNG-FVEEARK 174

Query: 514 ITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551
           I +  L  N + W  LL A   +G IE    DA +L +
Sbjct: 175 IFDQMLVKNEISWNGLLSAYVQNGRIE----DARRLFD 208


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 171/564 (30%), Positives = 284/564 (50%), Gaps = 33/564 (5%)

Query: 71  QVVHAMAIRLGCALDKFLSCSLVDM--YSKCGLADNALKVFYRIKDPDVVAWGAIITCLD 128
           Q VH  AI+ G   +  L   ++      + G    A ++F  I +P++  W  +I    
Sbjct: 35  QQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYS 94

Query: 129 QQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTL 188
           +    Q    ++  M    VKP+++    L +  T       G  +H  + K+G + +  
Sbjct: 95  RLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVF 154

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG 248
           V  ALV MY+  G++     VF+     D ++WN + S +      ++  R+F  M  K 
Sbjct: 155 VHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQ 214

Query: 249 FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
             P   T +++L ACS L D+  GK++H++     ++ N V+  +++DMY   G ++ A 
Sbjct: 215 VLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSAL 274

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEM------------------------------- 337
             F S+ N+D+ ++T I++ +   GE ++                               
Sbjct: 275 GIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKE 334

Query: 338 ALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVA 397
           AL+ FR M+   +K +EFT+ S L  C+ +  L  G  + +   +     D+FV  AL+ 
Sbjct: 335 ALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALID 394

Query: 398 MYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEIT 457
           MY KCG +D AE++F+  + RD  +W  MI G   +G GEKAL+ F  ML    +PDEIT
Sbjct: 395 MYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEIT 454

Query: 458 FVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET 517
           ++ VLSAC+H GL+++G+K+F  +   +GI P I H+ C++D+L RAG+  E    I   
Sbjct: 455 YIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENM 514

Query: 518 KLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFS 577
            +  N++VW  LL  C  +   ++ E   +++LELEP   + YV   +I A   RWND  
Sbjct: 515 PIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLR 574

Query: 578 GVRALLSSQGIKKEPSCSWIEVDG 601
            +R ++  +GIKK P CS IE++G
Sbjct: 575 ELRQMMMDKGIKKTPGCSLIEMNG 598



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 130/557 (23%), Positives = 250/557 (44%), Gaps = 51/557 (9%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           + A+R+F  +PE N+  WN ++ GY+     Q  + L+  M     K  +++   + KGF
Sbjct: 69  QYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGF 128

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
                ++ G+ +H   ++ G   + F+  +LV MY  CG  D A  VF      DV+ W 
Sbjct: 129 TRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWN 188

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            II+  ++ G  +E+ ++F +M +  V P    L  ++ A ++  D R G+ +H+ +   
Sbjct: 189 MIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNC 248

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF------------- 228
             ES+ ++ NA++ MY + G +     +F ++ ++D +SW  + S F             
Sbjct: 249 KVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYF 308

Query: 229 -----QDYES-------------PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVG 270
                +DY S               + L +F  M     KP+  T + +L AC+ L  + 
Sbjct: 309 DKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALE 368

Query: 271 FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
            G+ +  +  ++ +  +  V  +L+DMY K G ++ A   F  ++ +D F +TA+I   A
Sbjct: 369 LGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLA 428

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
             G  E AL  F  M    I  +E T    L+ C+    +  GR  + + + + H ++  
Sbjct: 429 VNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGR-KYFLRMTSQHGIEPN 487

Query: 391 VST--ALVAMYAKCGSIDDAEAVFKGSALR-DTASWNMMIGG---YVKHGLGEKAL-EAF 443
           ++    LV + A+ G + +A  V +   ++ ++  W  ++ G   Y +  + E  + +  
Sbjct: 488 IAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQIL 547

Query: 444 RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF--SSIKKIYGITPTIKHFACMIDIL 501
            +  D G V   +    + +AC     + E ++      IKK  G +        +I++ 
Sbjct: 548 ELEPDNGAV--YVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCS--------LIEMN 597

Query: 502 GRAGKFTEIENFITETK 518
           GR  +F   +    +TK
Sbjct: 598 GRVHEFVAGDRSHPQTK 614



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 119/454 (26%), Positives = 200/454 (44%), Gaps = 45/454 (9%)

Query: 147 SVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSM--YMENGRVS 204
           S  P    L SL+  T E+ DQ   + +H    K G  ++ ++ N +++     E G   
Sbjct: 13  SFSPPTHPLISLLE-TCESMDQL--QQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQ 69

Query: 205 YGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACS 264
           Y  R+F+ I   +   WN +   +   + P  G+ ++ +ML +G KP+  TF  + K  +
Sbjct: 70  YARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFT 129

Query: 265 SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA 324
               + +G+QLH H +KH L  N  V T+LV MY   G L+ A   FD     D+  +  
Sbjct: 130 RDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNM 189

Query: 325 IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           II++Y + G+ E + + F  M  + +     TL   L+ CS +  L  G+ +HS      
Sbjct: 190 IISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCK 249

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT------------------------ 420
              ++ +  A++ MYA CG +D A  +F+    RD                         
Sbjct: 250 VESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFD 309

Query: 421 -------ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
                   SW  MI GY++    ++ALE FR M      PDE T V VL+AC+H+G +E 
Sbjct: 310 KMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALEL 369

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           G+   + I +   I   +     +ID+  + G   + E+   E     +   W  ++   
Sbjct: 370 GEWIRTYIDR-NKIKNDLFVRNALIDMYFKCGDVDKAESIFREMS-QRDKFTWTAMIVGL 427

Query: 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           + +G+        EK L++   M    + P +I+
Sbjct: 428 AVNGH-------GEKALDMFSNMLKASILPDEIT 454



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 89/376 (23%), Positives = 174/376 (46%), Gaps = 36/376 (9%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+ VF   P+ +V++WN +++ Y + G  ++   LF  M+D +   +  +L  VL  
Sbjct: 169 LDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSA 228

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    ++ G+ VH+         +  L  +++DMY+ CG  D+AL +F  + + D+++W
Sbjct: 229 CSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISW 288

Query: 121 GAIITCLDQQGCC-------------------------------QEAAKIFNLMRESSVK 149
             I++     G                                 +EA ++F  M+ ++VK
Sbjct: 289 TTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVK 348

Query: 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRV 209
           P++F + S++ A    G    GE I   I +   ++D  V NAL+ MY + G V     +
Sbjct: 349 PDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESI 408

Query: 210 FEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDV 269
           F  ++ +D  +W A+          ++ L +F  ML     P+  T+I +L AC+    V
Sbjct: 409 FREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLV 468

Query: 270 GFGKQLHAH-TIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK-DLFAYTAIIT 327
             G++     T +H ++ N      LVD+  ++G L++A    +++  K +   + A++ 
Sbjct: 469 DKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLA 528

Query: 328 S---YAQAGEAEMALK 340
               Y ++  AEM +K
Sbjct: 529 GCRVYRESDMAEMVVK 544



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 133/281 (47%), Gaps = 8/281 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +++A+  F  MPE + VSW A+++GY  S   ++ + LF +M+    K  +F++ +VL  
Sbjct: 301 IDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTA 360

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+ G ++ G+ +     R     D F+  +L+DMY KCG  D A  +F  +   D   W
Sbjct: 361 CAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTW 420

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH-AVIC 179
            A+I  L   G  ++A  +F+ M ++S+ P++     ++ A T TG    G      +  
Sbjct: 421 TAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTS 480

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALFSRFQDYESPDQGL 238
           ++G E +      LV +    GR+     V E +    +S+ W AL +  + Y   D   
Sbjct: 481 QHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAE 540

Query: 239 RIFYQMLLKGFKPNMCTFIVIL----KACSSLSDVGFGKQL 275
            +  Q+L    +P+     V+L     AC   +D+   +Q+
Sbjct: 541 MVVKQIL--ELEPDNGAVYVLLCNIYAACKRWNDLRELRQM 579


>gi|358343602|ref|XP_003635889.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|358344096|ref|XP_003636129.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355501824|gb|AES83027.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355502064|gb|AES83267.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 662

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 175/529 (33%), Positives = 286/529 (54%), Gaps = 3/529 (0%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           +H   ++ G +L  F    L+D Y KC +   A K+F  + +  +V W ++I+    +G 
Sbjct: 23  LHTHILKSG-SLFSFFGHKLIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRGK 81

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE-SDTLVGN 191
            +EA ++++ M    V P+ +  +++ +A +E G  R G+  H +    GFE SD  V  
Sbjct: 82  TKEAIELYSNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFVAT 141

Query: 192 ALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKP 251
            +V MY + G++     VF+ +  +D V + AL   +  +    + L +F  M+    KP
Sbjct: 142 GIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQHGLDGEALEVFEDMVGSRIKP 201

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF 311
           N  T   +L +C +L D+  GK +H   +K+ L+      TSL+ MY K   +ED+   F
Sbjct: 202 NEYTLASVLVSCGNLGDLVNGKLIHGLVVKYGLESVVASQTSLLTMYSKCNMVEDSIKVF 261

Query: 312 DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLA 371
           +SLA      +T+ I    Q G  E+AL  FR+M    I  N FTL+S L+ CS +A L 
Sbjct: 262 NSLAYASHVTWTSFIVGLVQNGREEVALSMFREMMRCSISPNHFTLSSILHACSSLAMLE 321

Query: 372 NGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV 431
            G  +H++ VK G   + FV  AL+ +Y KCG+++ A +VF      D  S N MI  Y 
Sbjct: 322 AGEQIHAVTVKLGVDGNKFVDAALIHLYGKCGNVEKARSVFDSLTELDIVSINTMIYAYA 381

Query: 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI 491
           ++G G +ALE F  +   G  P+ +TF+ +L AC++ GL+EEG + FS I+  + I  T 
Sbjct: 382 QNGFGHEALELFERLKKLGLEPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIELTR 441

Query: 492 KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551
            H+ CMID+LGRA +F E    I E K  P+ + W  LL AC  HG +E+ EK  +K+L+
Sbjct: 442 DHYTCMIDLLGRAKRFEEATMLIEEGK-NPDVIQWRTLLNACKIHGEVEMAEKFMKKMLD 500

Query: 552 LEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
             P+    ++  ++I A+ G+W++   +++      +KK P+ SW+++D
Sbjct: 501 QAPRDGGTHILLTNIYASAGKWDNVIEMKSAGRDLRLKKTPAMSWVDID 549



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 131/450 (29%), Positives = 231/450 (51%), Gaps = 4/450 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F  MP  ++V+WN++++ +   G  ++ + L+ +M         ++ S + K F+ 
Sbjct: 54  ARKLFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYSNMLFEGVLPDAYTFSAIFKAFSE 113

Query: 64  SGYIKAGQVVHAMAIRLGCAL-DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
            G  + GQ  H +A+ LG  + D F++  +VDMY+K G   +A  VF R+ D DVV + A
Sbjct: 114 MGVSREGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTA 173

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I   +Q G   EA ++F  M  S +KPN++ L S++ +    GD   G+ IH ++ KYG
Sbjct: 174 LIVGYNQHGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKYG 233

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            ES      +L++MY +   V    +VF ++A+   V+W +           +  L +F 
Sbjct: 234 LESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEVALSMFR 293

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M+     PN  T   IL ACSSL+ +  G+Q+HA T+K  +DGN  V  +L+ +Y K G
Sbjct: 294 EMMRCSISPNHFTLSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKFVDAALIHLYGKCG 353

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            +E A   FDSL   D+ +   +I +YAQ G    AL+ F +++  G++ N  T  S L 
Sbjct: 354 NVEKARSVFDSLTELDIVSINTMIYAYAQNGFGHEALELFERLKKLGLEPNVVTFISILL 413

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVS--TALVAMYAKCGSIDDAEAVFKGSALRDT 420
            C+    +  G  + S+ ++  H +++     T ++ +  +    ++A  + +     D 
Sbjct: 414 ACNNAGLVEEGCQIFSL-IRNNHSIELTRDHYTCMIDLLGRAKRFEEATMLIEEGKNPDV 472

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
             W  ++     HG  E A +  + MLD+ 
Sbjct: 473 IQWRTLLNACKIHGEVEMAEKFMKKMLDQA 502



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 174/346 (50%), Gaps = 1/346 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A+ VF  + + +VV + AL+ GY + G   + + +F  M     K ++++L++VL  
Sbjct: 153 MKDARFVFDRVLDKDVVLFTALIVGYNQHGLDGEALEVFEDMVGSRIKPNEYTLASVLVS 212

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             N G +  G+++H + ++ G         SL+ MYSKC + ++++KVF  +     V W
Sbjct: 213 CGNLGDLVNGKLIHGLVVKYGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTW 272

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            + I  L Q G  + A  +F  M   S+ PN F L+S++ A +       GE IHAV  K
Sbjct: 273 TSFIVGLVQNGREEVALSMFREMMRCSISPNHFTLSSILHACSSLAMLEAGEQIHAVTVK 332

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G + +  V  AL+ +Y + G V     VF+++   D VS N +   +       + L +
Sbjct: 333 LGVDGNKFVDAALIHLYGKCGNVEKARSVFDSLTELDIVSINTMIYAYAQNGFGHEALEL 392

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTI-KHSLDGNHVVGTSLVDMYD 299
           F ++   G +PN+ TFI IL AC++   V  G Q+ +     HS++      T ++D+  
Sbjct: 393 FERLKKLGLEPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLG 452

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM 345
           ++   E+A +  +   N D+  +  ++ +    GE EMA K  +KM
Sbjct: 453 RAKRFEEATMLIEEGKNPDVIQWRTLLNACKIHGEVEMAEKFMKKM 498


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 171/564 (30%), Positives = 284/564 (50%), Gaps = 33/564 (5%)

Query: 71  QVVHAMAIRLGCALDKFLSCSLVDM--YSKCGLADNALKVFYRIKDPDVVAWGAIITCLD 128
           Q VH  AI+ G   +  L   ++      + G    A ++F  I +P++  W  +I    
Sbjct: 56  QQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYS 115

Query: 129 QQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTL 188
           +    Q    ++  M    VKP+++    L +  T       G  +H  + K+G + +  
Sbjct: 116 RLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVF 175

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG 248
           V  ALV MY+  G++     VF+     D ++WN + S +      ++  R+F  M  K 
Sbjct: 176 VHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQ 235

Query: 249 FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
             P   T +++L ACS L D+  GK++H++     ++ N V+  +++DMY   G ++ A 
Sbjct: 236 VLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSAL 295

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEM------------------------------- 337
             F S+ N+D+ ++T I++ +   GE ++                               
Sbjct: 296 GIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKE 355

Query: 338 ALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVA 397
           AL+ FR M+   +K +EFT+ S L  C+ +  L  G  + +   +     D+FV  AL+ 
Sbjct: 356 ALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALID 415

Query: 398 MYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEIT 457
           MY KCG +D AE++F+  + RD  +W  MI G   +G GEKAL+ F  ML    +PDEIT
Sbjct: 416 MYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEIT 475

Query: 458 FVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET 517
           ++ VLSAC+H GL+++G+K+F  +   +GI P I H+ C++D+L RAG+  E    I   
Sbjct: 476 YIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENM 535

Query: 518 KLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFS 577
            +  N++VW  LL  C  +   ++ E   +++LELEP   + YV   +I A   RWND  
Sbjct: 536 PIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLR 595

Query: 578 GVRALLSSQGIKKEPSCSWIEVDG 601
            +R ++  +GIKK P CS IE++G
Sbjct: 596 ELRQMMMDKGIKKXPGCSLIEMNG 619



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 130/557 (23%), Positives = 250/557 (44%), Gaps = 51/557 (9%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           + A+R+F  +PE N+  WN ++ GY+     Q  + L+  M     K  +++   + KGF
Sbjct: 90  QYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGF 149

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
                ++ G+ +H   ++ G   + F+  +LV MY  CG  D A  VF      DV+ W 
Sbjct: 150 TRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWN 209

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            II+  ++ G  +E+ ++F +M +  V P    L  ++ A ++  D R G+ +H+ +   
Sbjct: 210 MIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNC 269

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF------------- 228
             ES+ ++ NA++ MY + G +     +F ++ ++D +SW  + S F             
Sbjct: 270 KVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYF 329

Query: 229 -----QDYES-------------PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVG 270
                +DY S               + L +F  M     KP+  T + +L AC+ L  + 
Sbjct: 330 DKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALE 389

Query: 271 FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
            G+ +  +  ++ +  +  V  +L+DMY K G ++ A   F  ++ +D F +TA+I   A
Sbjct: 390 LGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLA 449

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
             G  E AL  F  M    I  +E T    L+ C+    +  GR  + + + + H ++  
Sbjct: 450 VNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGR-KYFLRMTSQHGIEPN 508

Query: 391 VST--ALVAMYAKCGSIDDAEAVFKGSALR-DTASWNMMIGG---YVKHGLGEKAL-EAF 443
           ++    LV + A+ G + +A  V +   ++ ++  W  ++ G   Y +  + E  + +  
Sbjct: 509 IAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQIL 568

Query: 444 RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF--SSIKKIYGITPTIKHFACMIDIL 501
            +  D G V   +    + +AC     + E ++      IKK  G +        +I++ 
Sbjct: 569 ELEPDNGAV--YVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCS--------LIEMN 618

Query: 502 GRAGKFTEIENFITETK 518
           GR  +F   +    +TK
Sbjct: 619 GRVHEFVAGDRSHPQTK 635



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 119/454 (26%), Positives = 200/454 (44%), Gaps = 45/454 (9%)

Query: 147 SVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSM--YMENGRVS 204
           S  P    L SL+  T E+ DQ   + +H    K G  ++ ++ N +++     E G   
Sbjct: 34  SFSPPTHPLISLLE-TCESMDQL--QQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQ 90

Query: 205 YGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACS 264
           Y  R+F+ I   +   WN +   +   + P  G+ ++ +ML +G KP+  TF  + K  +
Sbjct: 91  YARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFT 150

Query: 265 SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA 324
               + +G+QLH H +KH L  N  V T+LV MY   G L+ A   FD     D+  +  
Sbjct: 151 RDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNM 210

Query: 325 IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           II++Y + G+ E + + F  M  + +     TL   L+ CS +  L  G+ +HS      
Sbjct: 211 IISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCK 270

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT------------------------ 420
              ++ +  A++ MYA CG +D A  +F+    RD                         
Sbjct: 271 VESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFD 330

Query: 421 -------ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
                   SW  MI GY++    ++ALE FR M      PDE T V VL+AC+H+G +E 
Sbjct: 331 KMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALEL 390

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           G+   + I +   I   +     +ID+  + G   + E+   E     +   W  ++   
Sbjct: 391 GEWIRTYIDR-NKIKNDLFVRNALIDMYFKCGDVDKAESIFREMS-QRDKFTWTAMIVGL 448

Query: 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           + +G+        EK L++   M    + P +I+
Sbjct: 449 AVNGH-------GEKALDMFSNMLKASILPDEIT 475



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/376 (23%), Positives = 174/376 (46%), Gaps = 36/376 (9%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+ VF   P+ +V++WN +++ Y + G  ++   LF  M+D +   +  +L  VL  
Sbjct: 190 LDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSA 249

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    ++ G+ VH+         +  L  +++DMY+ CG  D+AL +F  + + D+++W
Sbjct: 250 CSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISW 309

Query: 121 GAIITCLDQQGCC-------------------------------QEAAKIFNLMRESSVK 149
             I++     G                                 +EA ++F  M+ ++VK
Sbjct: 310 TTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVK 369

Query: 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRV 209
           P++F + S++ A    G    GE I   I +   ++D  V NAL+ MY + G V     +
Sbjct: 370 PDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESI 429

Query: 210 FEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDV 269
           F  ++ +D  +W A+          ++ L +F  ML     P+  T+I +L AC+    V
Sbjct: 430 FREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLV 489

Query: 270 GFGKQLHAH-TIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK-DLFAYTAIIT 327
             G++     T +H ++ N      LVD+  ++G L++A    +++  K +   + A++ 
Sbjct: 490 DKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLA 549

Query: 328 S---YAQAGEAEMALK 340
               Y ++  AEM +K
Sbjct: 550 GCRVYRESDMAEMVVK 565



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 133/281 (47%), Gaps = 8/281 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +++A+  F  MPE + VSW A+++GY  S   ++ + LF +M+    K  +F++ +VL  
Sbjct: 322 IDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTA 381

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+ G ++ G+ +     R     D F+  +L+DMY KCG  D A  +F  +   D   W
Sbjct: 382 CAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTW 441

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH-AVIC 179
            A+I  L   G  ++A  +F+ M ++S+ P++     ++ A T TG    G      +  
Sbjct: 442 TAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTS 501

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALFSRFQDYESPDQGL 238
           ++G E +      LV +    GR+     V E +    +S+ W AL +  + Y   D   
Sbjct: 502 QHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAE 561

Query: 239 RIFYQMLLKGFKPNMCTFIVIL----KACSSLSDVGFGKQL 275
            +  Q+L    +P+     V+L     AC   +D+   +Q+
Sbjct: 562 MVVKQIL--ELEPDNGAVYVLLCNIYAACKRWNDLRELRQM 600


>gi|296085749|emb|CBI29560.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 183/567 (32%), Positives = 292/567 (51%), Gaps = 63/567 (11%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII-- 124
           +  G+ +H++ I+       + S   + +YSKCG    A K F  I DP+V ++ AII  
Sbjct: 24  LSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPNVFSFNAIIAA 83

Query: 125 --------------------------TCLDQQGCCQEAAK---IFNLMRESSVKPNQFVL 155
                                     T +     C E A    +F+ MRE  +  + F L
Sbjct: 84  YAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTL 143

Query: 156 TSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH 215
           ++++ A  +  D      +H+V    GF+S   V NAL++ Y +NG +    RVF  +  
Sbjct: 144 SAVITACCD--DVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGG 201

Query: 216 -QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ 274
            +D VSWN++   +  ++   + L +F +M+ +G   +M T   +L A + L D+  G Q
Sbjct: 202 IRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQ 261

Query: 275 LHAHTIKHSLDGNHVVGTSLVDMYDK-SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
            H   IK     N  VG+ L+D+Y K  G + D    F+ +   DL  +  +++ Y+Q  
Sbjct: 262 FHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNE 321

Query: 334 E-AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS 392
           E  E AL+CFR+M+  G + N+ +    ++ CS +++ + G+ +HS+A+K          
Sbjct: 322 EFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKR--------- 372

Query: 393 TALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV 452
                             +F   A  +T S N MI GY +HG+  ++L  F+ ML+    
Sbjct: 373 ------------------LFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIA 414

Query: 453 PDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIEN 512
           P  ITF+ VLSAC+H G +EEG  +F+ +K+ + I P  +H++CMID+LGRAGK +E EN
Sbjct: 415 PTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAEN 474

Query: 513 FITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGR 572
            I      P ++ W +LLGAC  HGNIEL  K A ++L+LEP   + YV  S++ A+ GR
Sbjct: 475 LIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGR 534

Query: 573 WNDFSGVRALLSSQGIKKEPSCSWIEV 599
           W + + VR  +  +G+KK+P CSWIEV
Sbjct: 535 WEEVATVRKFMRDRGVKKKPGCSWIEV 561



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 126/469 (26%), Positives = 213/469 (45%), Gaps = 42/469 (8%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           +A ++F  +PE ++VS+N L++ YA+ G+    + LF  M++M      F+LS V+    
Sbjct: 92  IAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITACC 151

Query: 63  NS-GYIKAGQVVHAMAIRLGCALDKFLSC--SLVDMYSKCGLADNALKVFYRIKD-PDVV 118
           +  G I  GQ +H++A+  G   D ++S   +L+  Y K G  D+A +VFY +    D V
Sbjct: 152 DDVGLI--GQ-LHSVAVSSG--FDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEV 206

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +W ++I    Q     +A  +F  M    +  + F L S++ A T   D   G   H  +
Sbjct: 207 SWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQL 266

Query: 179 CKYGFESDTLVGNALVSMYME-NGRVSYGSRVFEAIAHQDSVSWNALFSRF-QDYESPDQ 236
            K GF  ++ VG+ L+ +Y +  G +S   +VFE I   D V WN + S + Q+ E  + 
Sbjct: 267 IKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLED 326

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            L  F QM   G++PN C+F+ ++ ACS+LS    GKQ+H+  +K               
Sbjct: 327 ALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKR-------------- 372

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
                         FD +A  +  +  ++I  YAQ G    +L  F+ M    I     T
Sbjct: 373 -------------LFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSIT 419

Query: 357 LASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
             S L+ C+    +  G    + +  K     +    + ++ +  + G + +AE +    
Sbjct: 420 FISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARM 479

Query: 416 ALRD-TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
                +  W  ++G    HG  E A++A   +L     P      VVLS
Sbjct: 480 PFNPGSIGWASLLGACRTHGNIELAVKAANQVLQ--LEPSNAAPYVVLS 526



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 148/344 (43%), Gaps = 41/344 (11%)

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
           F  +LK C +  D+  GK LH+  IK  +  +       + +Y K G L  A  AF  ++
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 316 NKDLFAYTAIITSYAQ-------------------------------AGEAEMALKCFRK 344
           + ++F++ AII +YA+                                GE   AL  F  
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404
           MR  G+  + FTL++ +  C     L     LHS+AV +G    + V+ AL+  Y K G 
Sbjct: 131 MREMGLDMDGFTLSAVITACCDDVGLIGQ--LHSVAVSSGFDSYVSVNNALLTYYGKNGD 188

Query: 405 IDDAEAVFKG-SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           +DDA+ VF G   +RD  SWN MI  Y +H  G KAL  F+ M+  G   D  T   VL+
Sbjct: 189 LDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLT 248

Query: 464 ACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNA 523
           A + +  +  G +    + K  G        + +ID+  + G        + E    P+ 
Sbjct: 249 AFTCLEDLSGGLQFHGQLIKT-GFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDL 307

Query: 524 LVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           ++W  ++   S       +E+  E  LE   +M+     P+D S
Sbjct: 308 VLWNTMVSGYS------QNEEFLEDALECFRQMQGIGYRPNDCS 345



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 40/228 (17%), Positives = 96/228 (42%), Gaps = 30/228 (13%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDG-QKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           M   ++VF+ + E ++V WN +++GY+++ +  +  +  F  M+ +  + +  S   V+ 
Sbjct: 292 MSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVIS 351

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             +N      G+ +H++A++                           ++F R+ + + V+
Sbjct: 352 ACSNLSSPSQGKQIHSLALK---------------------------RLFDRMAEHNTVS 384

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
             ++I    Q G   E+  +F  M E  + P      S++ A   TG    G +   ++ 
Sbjct: 385 LNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMK 444

Query: 180 -KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALF 225
            K+  E +    + ++ +    G++S    +   +  +  S+ W +L 
Sbjct: 445 EKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLL 492


>gi|15236431|ref|NP_192561.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208454|sp|Q9SUF9.1|PP305_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g08210
 gi|5262194|emb|CAB45791.1| putative protein [Arabidopsis thaliana]
 gi|7267461|emb|CAB81157.1| putative protein [Arabidopsis thaliana]
 gi|332657209|gb|AEE82609.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 686

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 199/633 (31%), Positives = 323/633 (51%), Gaps = 45/633 (7%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFS-KFSLSTVLKGFA 62
           A +VF  M E N+V+W  +++GY   G   K + L+  M D E++ + +F  S VLK   
Sbjct: 59  AHKVFDEMSERNIVTWTTMVSGYTSDGKPNKAIELYRRMLDSEEEAANEFMYSAVLKACG 118

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDM--------------------------- 95
             G I+ G +V+    +     D  L  S+VDM                           
Sbjct: 119 LVGDIQLGILVYERIGKENLRGDVVLMNSVVDMYVKNGRLIEANSSFKEILRPSSTSWNT 178

Query: 96  ----YSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPN 151
               Y K GL D A+ +F+R+  P+VV+W  +I+    +G  +    +  + RE  V  +
Sbjct: 179 LISGYCKAGLMDEAVTLFHRMPQPNVVSWNCLISGFVDKGSPRALEFLVRMQREGLVL-D 237

Query: 152 QFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF- 210
            F L   ++A +  G    G+ +H  + K G ES     +AL+ MY   G + Y + VF 
Sbjct: 238 GFALPCGLKACSFGGLLTMGKQLHCCVVKSGLESSPFAISALIDMYSNCGSLIYAADVFH 297

Query: 211 -EAIAHQDSVS-WNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMC----TFIVILKACS 264
            E +A   SV+ WN++ S F   E  +  L     +LL+ ++ ++C    T    LK C 
Sbjct: 298 QEKLAVNSSVAVWNSMLSGFLINEENEAAL----WLLLQIYQSDLCFDSYTLSGALKICI 353

Query: 265 SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA 324
           +  ++  G Q+H+  +    + +++VG+ LVD++   G ++DA   F  L NKD+ A++ 
Sbjct: 354 NYVNLRLGLQVHSLVVVSGYELDYIVGSILVDLHANVGNIQDAHKLFHRLPNKDIIAFSG 413

Query: 325 IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           +I    ++G   +A   FR++   G+ +++F +++ L  CS +A+L  G+ +H + +K G
Sbjct: 414 LIRGCVKSGFNSLAFYLFRELIKLGLDADQFIVSNILKVCSSLASLGWGKQIHGLCIKKG 473

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
           +  +   +TALV MY KCG ID+   +F G   RD  SW  +I G+ ++G  E+A   F 
Sbjct: 474 YESEPVTATALVDMYVKCGEIDNGVVLFDGMLERDVVSWTGIIVGFGQNGRVEEAFRYFH 533

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA 504
            M++ G  P+++TF+ +LSAC H GL+EE +    ++K  YG+ P ++H+ C++D+LG+A
Sbjct: 534 KMINIGIEPNKVTFLGLLSACRHSGLLEEARSTLETMKSEYGLEPYLEHYYCVVDLLGQA 593

Query: 505 GKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564
           G F E    I +  L P+  +W +LL AC  H N  L    AEKLL+  P   S Y   S
Sbjct: 594 GLFQEANELINKMPLEPDKTIWTSLLTACGTHKNAGLVTVIAEKLLKGFPDDPSVYTSLS 653

Query: 565 DISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           +  AT G W+  S VR      G  KE   SWI
Sbjct: 654 NAYATLGMWDQLSKVREAAKKLG-AKESGMSWI 685



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 134/527 (25%), Positives = 244/527 (46%), Gaps = 45/527 (8%)

Query: 54  LSTVLKGFANSGYIKA---GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFY 110
           L  +  G  + G ++A   G+ + A  I+ G + + F++ +++ MY    L  +A KVF 
Sbjct: 5   LKLIAAGLRHCGKVQAFKRGESIQAHVIKQGISQNVFIANNVISMYVDFRLLSDAHKVFD 64

Query: 111 RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK-PNQFVLTSLVRATTETGDQR 169
            + + ++V W  +++     G   +A +++  M +S  +  N+F+ +++++A    GD +
Sbjct: 65  EMSERNIVTWTTMVSGYTSDGKPNKAIELYRRMLDSEEEAANEFMYSAVLKACGLVGDIQ 124

Query: 170 CGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
            G  ++  I K     D ++ N++V MY++NGR+   +  F+ I    S SWN L S + 
Sbjct: 125 LGILVYERIGKENLRGDVVLMNSVVDMYVKNGRLIEANSSFKEILRPSSTSWNTLISGYC 184

Query: 230 DYESPDQGLRIFYQM----------LLKGF----KPNMCTFIVI---------------- 259
                D+ + +F++M          L+ GF     P    F+V                 
Sbjct: 185 KAGLMDEAVTLFHRMPQPNVVSWNCLISGFVDKGSPRALEFLVRMQREGLVLDGFALPCG 244

Query: 260 LKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF--DSLA-N 316
           LKACS    +  GKQLH   +K  L+ +    ++L+DMY   G L  A   F  + LA N
Sbjct: 245 LKACSFGGLLTMGKQLHCCVVKSGLESSPFAISALIDMYSNCGSLIYAADVFHQEKLAVN 304

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL 376
             +  + ++++ +    E E AL    ++    +  + +TL+  L  C     L  G  +
Sbjct: 305 SSVAVWNSMLSGFLINEENEAALWLLLQIYQSDLCFDSYTLSGALKICINYVNLRLGLQV 364

Query: 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
           HS+ V +G+ LD  V + LV ++A  G+I DA  +F     +D  +++ +I G VK G  
Sbjct: 365 HSLVVVSGYELDYIVGSILVDLHANVGNIQDAHKLFHRLPNKDIIAFSGLIRGCVKSGFN 424

Query: 437 EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFA 495
             A   FR ++  G   D+     +L  CS +  +  GK+ H   IKK Y   P      
Sbjct: 425 SLAFYLFRELIKLGLDADQFIVSNILKVCSSLASLGWGKQIHGLCIKKGYESEPVTA--T 482

Query: 496 CMIDILGRAGKFTEIENFIT--ETKLTPNALVWENLLGACSWHGNIE 540
            ++D+  + G   EI+N +   +  L  + + W  ++     +G +E
Sbjct: 483 ALVDMYVKCG---EIDNGVVLFDGMLERDVVSWTGIIVGFGQNGRVE 526


>gi|222632692|gb|EEE64824.1| hypothetical protein OsJ_19680 [Oryza sativa Japonica Group]
          Length = 688

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 198/612 (32%), Positives = 307/612 (50%), Gaps = 35/612 (5%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSK---FSLSTVLK- 59
           A R+F  MP  + V++  LL G+A +GD    M LF  ++      +    F LS V K 
Sbjct: 44  AHRLFDGMPRRDEVAYATLLAGHAAAGDFPGAMALFSRLRASSPPLAPADPFVLSLVFKS 103

Query: 60  --GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
               A++ ++     +HA A   GC                 GLA   LKVF  +   +V
Sbjct: 104 CAAAADARFLPHAASLHAFAA--GC----------------LGLA---LKVFDEMPHKNV 142

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           V+W  ++  L + G   EA + F+ MR S V  + +   + + A  + G    G  +HA 
Sbjct: 143 VSWTTLVASLTRAGRRHEALRRFSEMRASGVHCDSYAYAAALTACADAGLLSRGREVHAF 202

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
             K G +S   V N L ++Y     V         +  +D  +W  + S +       + 
Sbjct: 203 CAKLGLDSTPYVANTLATLYARCSDVDRALAAVSRMGTRDVAAWTTVISAYVQTGRAKEA 262

Query: 238 LRIFYQMLLK----GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
           +  F +ML +       PN  T+  ++ AC+ ++ V  G+QLHA   +        V  S
Sbjct: 263 IEAFVRMLREESSVAASPNEYTYAAVIAACADIAWVCLGEQLHAQAARKGFACARSVANS 322

Query: 294 LVDMYDKS-GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG--I 350
           LV +Y ++ GCL  A   F     KD+ +++AII+ YAQ G AE A   FR+MR      
Sbjct: 323 LVTLYTRAAGCLSAADAVFRESVVKDVVSWSAIISGYAQEGLAEDAFALFREMRHHSGCP 382

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
           + NEFTLAS L+ C+  A+L  GR LH++AV  G      + +AL+ MY K GS+ DA+ 
Sbjct: 383 RPNEFTLASLLSVCATAASLDAGRQLHTLAVAAGLEHHAMIRSALIDMYGKSGSMLDADI 442

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           VF      D  SW  MI GY +HG  +KALE F+ M   G  PD +TF+ VL+AC H G 
Sbjct: 443 VFSHRVKDDVVSWTAMIVGYAEHGHSKKALELFQEMCHVGLKPDHVTFIGVLNACCHAGE 502

Query: 471 IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTP-NALVWENL 529
           +E G ++ + + +IYG+ P  +H+ C++D+LGRAG+  E E  I +      + +VW +L
Sbjct: 503 VELGLRYLNEMNQIYGLYPAKEHYGCVVDLLGRAGRINEAEELIGKIAANERDGVVWTSL 562

Query: 530 LGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589
           L AC+  G  E  +K AE+ +E EP     +V  +++ A++G+W++ +  R ++  +G+ 
Sbjct: 563 LRACAARGEEETGKKAAERAMEAEPWGAGAHVAMANLYASKGQWHEAAQERHMMKQKGVV 622

Query: 590 KEPSCSWIEVDG 601
           K    S I V G
Sbjct: 623 KGAGWSSITVGG 634



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 125/452 (27%), Positives = 213/452 (47%), Gaps = 13/452 (2%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           LA +VF  MP  NVVSW  L+     +G   + +  F  M+        ++ +  L   A
Sbjct: 129 LALKVFDEMPHKNVVSWTTLVASLTRAGRRHEALRRFSEMRASGVHCDSYAYAAALTACA 188

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           ++G +  G+ VHA   +LG     +++ +L  +Y++C   D AL    R+   DV AW  
Sbjct: 189 DAGLLSRGREVHAFCAKLGLDSTPYVANTLATLYARCSDVDRALAAVSRMGTRDVAAWTT 248

Query: 123 IITCLDQQGCCQEAAKIF-NLMRESS---VKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +I+   Q G  +EA + F  ++RE S     PN++   +++ A  +      GE +HA  
Sbjct: 249 VISAYVQTGRAKEAIEAFVRMLREESSVAASPNEYTYAAVIAACADIAWVCLGEQLHAQA 308

Query: 179 CKYGFESDTLVGNALVSMYME-NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
            + GF     V N+LV++Y    G +S    VF     +D VSW+A+ S +      +  
Sbjct: 309 ARKGFACARSVANSLVTLYTRAAGCLSAADAVFRESVVKDVVSWSAIISGYAQEGLAEDA 368

Query: 238 LRIFYQMLLKG--FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
             +F +M       +PN  T   +L  C++ + +  G+QLH   +   L+ + ++ ++L+
Sbjct: 369 FALFREMRHHSGCPRPNEFTLASLLSVCATAASLDAGRQLHTLAVAAGLEHHAMIRSALI 428

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
           DMY KSG + DA + F      D+ ++TA+I  YA+ G ++ AL+ F++M   G+K +  
Sbjct: 429 DMYGKSGSMLDADIVFSHRVKDDVVSWTAMIVGYAEHGHSKKALELFQEMCHVGLKPDHV 488

Query: 356 TLASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
           T    LN C     +  G R L+ +    G          +V +  + G I++AE +   
Sbjct: 489 TFIGVLNACCHAGEVELGLRYLNEMNQIYGLYPAKEHYGCVVDLLGRAGRINEAEELIGK 548

Query: 415 SAL--RDTASWNMMIGGYVKHG---LGEKALE 441
            A   RD   W  ++      G    G+KA E
Sbjct: 549 IAANERDGVVWTSLLRACAARGEEETGKKAAE 580



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 113/231 (48%), Gaps = 7/231 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDME--KKFSKFSLSTVL 58
           +  A  VF+     +VVSW+A+++GYA+ G  +    LF  M+      + ++F+L+++L
Sbjct: 334 LSAADAVFRESVVKDVVSWSAIISGYAQEGLAEDAFALFREMRHHSGCPRPNEFTLASLL 393

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF-YRIKDPDV 117
              A +  + AG+ +H +A+  G      +  +L+DMY K G   +A  VF +R+KD DV
Sbjct: 394 SVCATAASLDAGRQLHTLAVAAGLEHHAMIRSALIDMYGKSGSMLDADIVFSHRVKD-DV 452

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG-ESIHA 176
           V+W A+I    + G  ++A ++F  M    +KP+      ++ A    G+   G   ++ 
Sbjct: 453 VSWTAMIVGYAEHGHSKKALELFQEMCHVGLKPDHVTFIGVLNACCHAGEVELGLRYLNE 512

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA--HQDSVSWNALF 225
           +   YG          +V +    GR++    +   IA   +D V W +L 
Sbjct: 513 MNQIYGLYPAKEHYGCVVDLLGRAGRINEAEELIGKIAANERDGVVWTSLL 563



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 73/180 (40%), Gaps = 21/180 (11%)

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG---IKSNEFT 356
           +S  L DA   FD +  +D  AY  ++  +A AG+   A+  F ++R        ++ F 
Sbjct: 37  RSSRLADAHRLFDGMPRRDEVAYATLLAGHAAAGDFPGAMALFSRLRASSPPLAPADPFV 96

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
           L+     C   A  A+ R L   A             +L A  A C  +  A  VF    
Sbjct: 97  LSLVFKSC---AAAADARFLPHAA-------------SLHAFAAGCLGL--ALKVFDEMP 138

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            ++  SW  ++    + G   +AL  F  M   G   D   +   L+AC+  GL+  G++
Sbjct: 139 HKNVVSWTTLVASLTRAGRRHEALRRFSEMRASGVHCDSYAYAAALTACADAGLLSRGRE 198


>gi|224124484|ref|XP_002319343.1| predicted protein [Populus trichocarpa]
 gi|222857719|gb|EEE95266.1| predicted protein [Populus trichocarpa]
          Length = 848

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 182/597 (30%), Positives = 311/597 (52%), Gaps = 1/597 (0%)

Query: 4   AKRVFKSMPEL-NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           A R+FK + +  NVV+WN ++ G+ E+G  +  + ++   K+   K    S ++ L    
Sbjct: 208 AWRLFKELEDKGNVVAWNVMIGGFGENGLWENSLEVYLLAKNENVKLVSASFTSTLSACC 267

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
              ++  G  VH   ++LG   D ++  SL+ MYSKC L ++A  VF ++       W A
Sbjct: 268 QGEFVSFGMQVHCDLVKLGFENDPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKTELWNA 327

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I+     G   +  KI+  M+   + P+    T+++ +    G    G  IHA + K  
Sbjct: 328 MISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSSCCLVGSYDFGRLIHAELVKRP 387

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            +S+  + +AL++MY + G     + +F  I  +D V+W ++ S F       + L  + 
Sbjct: 388 IQSNVALQSALLTMYSKCGNSDDANSIFNTIKGRDVVAWGSMISGFCQNRKYMEALEFYN 447

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            M + G KP+      ++ AC+ L +V  G  +H   IK  L+ +  V +SLVDMY K  
Sbjct: 448 SMTVYGEKPDSDIMASVVSACTGLKNVNLGCTIHGLAIKSGLEQDVFVASSLVDMYSKFN 507

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
             + +G  F  +  K+L A+ +II+ Y + G  ++++  F +M   G+  +  ++ S L 
Sbjct: 508 FPKMSGNVFSDMPLKNLVAWNSIISCYCRNGLPDLSISLFSQMTQYGLFPDSVSITSVLV 567

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
             S VA L  G+ +H   ++     D+ +  AL+ MY KCG +  A+ +F+     +  +
Sbjct: 568 SVSSVAVLRKGKAVHGYLIRQRIPSDLQLENALIDMYIKCGFLKYAQHIFQNMLQTNLVT 627

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN+MI G   HG   KA+  F  M   G  PD+ITF+ +L++C+H G IEEG K F  + 
Sbjct: 628 WNIMIAGCGSHGDWLKAMSLFDEMRSFGIAPDDITFISLLTSCNHCGFIEEGLKLFQLMT 687

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
             +GI P ++H+  ++D+LGRAG+  +   F+    + P+  +W +LL +C  H N+EL 
Sbjct: 688 VEHGIEPRMEHYVNIVDLLGRAGRLDDAYAFVKNLPIEPDRSIWLSLLCSCRVHHNVELG 747

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +  A KLL++EP   SNYV   ++       +  + +RA +  +G+KK P CSWIEV
Sbjct: 748 KLAAHKLLDIEPSRGSNYVQLLNLYGENELQDRAANLRASMKEKGLKKTPGCSWIEV 804



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 152/571 (26%), Positives = 283/571 (49%), Gaps = 19/571 (3%)

Query: 4   AKRVFKSMPE-----LNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVL 58
           A +VF  +PE      +V  WN+++NGY   G  ++ +  FC M+    +   +SL  +L
Sbjct: 104 AVKVFDKLPESEVSGQDVTFWNSIVNGYFRFGHKKEGIAQFCRMQLFGVRPDAYSLCILL 163

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP-DV 117
              A+ G++   + +H  ++R     D FL   L+ MY  CG   +A ++F  ++D  +V
Sbjct: 164 G--ASDGHLGYAKQIHGYSVRKVFYGDPFLESGLIYMYFSCGRPLDAWRLFKELEDKGNV 221

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           VAW  +I    + G  + + +++ L +  +VK      TS + A  +      G  +H  
Sbjct: 222 VAWNVMIGGFGENGLWENSLEVYLLAKNENVKLVSASFTSTLSACCQGEFVSFGMQVHCD 281

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
           + K GFE+D  V  +L++MY +   V     VF+ ++ + +  WNA+ S +        G
Sbjct: 282 LVKLGFENDPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKTELWNAMISAYVGNGRSYDG 341

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           L+I+ QM +    P+  T   +L +C  +    FG+ +HA  +K  +  N  + ++L+ M
Sbjct: 342 LKIYKQMKVLQIPPDSLTATNVLSSCCLVGSYDFGRLIHAELVKRPIQSNVALQSALLTM 401

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K G  +DA   F+++  +D+ A+ ++I+ + Q  +   AL+ +  M + G K +   +
Sbjct: 402 YSKCGNSDDANSIFNTIKGRDVVAWGSMISGFCQNRKYMEALEFYNSMTVYGEKPDSDIM 461

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           AS ++ C+ +  +  G  +H +A+K+G   D+FV+++LV MY+K      +  VF    L
Sbjct: 462 ASVVSACTGLKNVNLGCTIHGLAIKSGLEQDVFVASSLVDMYSKFNFPKMSGNVFSDMPL 521

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK- 476
           ++  +WN +I  Y ++GL + ++  F  M   G  PD ++   VL + S + ++ +GK  
Sbjct: 522 KNLVAWNSIISCYCRNGLPDLSISLFSQMTQYGLFPDSVSITSVLVSVSSVAVLRKGKAV 581

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
           H   I++   I   ++    +ID+  + G F +    I +  L  N + W  ++  C  H
Sbjct: 582 HGYLIRQ--RIPSDLQLENALIDMYIKCG-FLKYAQHIFQNMLQTNLVTWNIMIAGCGSH 638

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           G       D  K + L  +M S  + P DI+
Sbjct: 639 G-------DWLKAMSLFDEMRSFGIAPDDIT 662



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/432 (27%), Positives = 210/432 (48%), Gaps = 9/432 (2%)

Query: 50  SKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCAL-DKFLSCSLVDMYSKCGLADNALKV 108
           ++F+  ++LK       ++ G+ +H+  I  G    D +++ SL++ Y KCG   NA+KV
Sbjct: 48  TRFTYPSLLKACGFLSNLQYGKTIHSTIITKGFFYSDPYITTSLINFYFKCGSFGNAVKV 107

Query: 109 FYRIKDP-----DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATT 163
           F ++ +      DV  W +I+    + G  +E    F  M+   V+P+ + L  L+ A+ 
Sbjct: 108 FDKLPESEVSGQDVTFWNSIVNGYFRFGHKKEGIAQFCRMQLFGVRPDAYSLCILLGAS- 166

Query: 164 ETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-DSVSWN 222
             G     + IH    +  F  D  + + L+ MY   GR     R+F+ +  + + V+WN
Sbjct: 167 -DGHLGYAKQIHGYSVRKVFYGDPFLESGLIYMYFSCGRPLDAWRLFKELEDKGNVVAWN 225

Query: 223 ALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKH 282
            +   F +    +  L ++     +  K    +F   L AC     V FG Q+H   +K 
Sbjct: 226 VMIGGFGENGLWENSLEVYLLAKNENVKLVSASFTSTLSACCQGEFVSFGMQVHCDLVKL 285

Query: 283 SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCF 342
             + +  V TSL+ MY K   +EDA   FD ++ K    + A+I++Y   G +   LK +
Sbjct: 286 GFENDPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKTELWNAMISAYVGNGRSYDGLKIY 345

Query: 343 RKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC 402
           ++M++  I  +  T  + L+ C  V +   GRL+H+  VK     ++ + +AL+ MY+KC
Sbjct: 346 KQMKVLQIPPDSLTATNVLSSCCLVGSYDFGRLIHAELVKRPIQSNVALQSALLTMYSKC 405

Query: 403 GSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVL 462
           G+ DDA ++F     RD  +W  MI G+ ++    +ALE +  M   G  PD      V+
Sbjct: 406 GNSDDANSIFNTIKGRDVVAWGSMISGFCQNRKYMEALEFYNSMTVYGEKPDSDIMASVV 465

Query: 463 SACSHMGLIEEG 474
           SAC+ +  +  G
Sbjct: 466 SACTGLKNVNLG 477



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 120/449 (26%), Positives = 213/449 (47%), Gaps = 3/449 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ VF  +       WNA+++ Y  +G     + ++  MK ++      + + VL  
Sbjct: 307 VEDAENVFDQVSVKKTELWNAMISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSS 366

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
               G    G+++HA  ++     +  L  +L+ MYSKCG +D+A  +F  IK  DVVAW
Sbjct: 367 CCLVGSYDFGRLIHAELVKRPIQSNVALQSALLTMYSKCGNSDDANSIFNTIKGRDVVAW 426

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
           G++I+   Q     EA + +N M     KP+  ++ S+V A T   +   G +IH +  K
Sbjct: 427 GSMISGFCQNRKYMEALEFYNSMTVYGEKPDSDIMASVVSACTGLKNVNLGCTIHGLAIK 486

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G E D  V ++LV MY +         VF  +  ++ V+WN++ S +     PD  + +
Sbjct: 487 SGLEQDVFVASSLVDMYSKFNFPKMSGNVFSDMPLKNLVAWNSIISCYCRNGLPDLSISL 546

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QM   G  P+  +   +L + SS++ +  GK +H + I+  +  +  +  +L+DMY K
Sbjct: 547 FSQMTQYGLFPDSVSITSVLVSVSSVAVLRKGKAVHGYLIRQRIPSDLQLENALIDMYIK 606

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L+ A   F ++   +L  +  +I      G+   A+  F +MR  GI  ++ T  S 
Sbjct: 607 CGFLKYAQHIFQNMLQTNLVTWNIMIAGCGSHGDWLKAMSLFDEMRSFGIAPDDITFISL 666

Query: 361 LNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR- 418
           L  C+    +  G +L   + V+ G    M     +V +  + G +DDA A  K   +  
Sbjct: 667 LTSCNHCGFIEEGLKLFQLMTVEHGIEPRMEHYVNIVDLLGRAGRLDDAYAFVKNLPIEP 726

Query: 419 DTASW-NMMIGGYVKHGLGEKALEAFRMM 446
           D + W +++    V H +    L A +++
Sbjct: 727 DRSIWLSLLCSCRVHHNVELGKLAAHKLL 755



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 109/240 (45%), Gaps = 20/240 (8%)

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
           +LA+ DL      I +  Q G+   AL+ + +  L   +   FT  S L  C  ++ L  
Sbjct: 13  NLAHSDLI--DPKIVTLVQQGQYVDALQFYSRNPLNATR---FTYPSLLKACGFLSNLQY 67

Query: 373 GRLLHSIAVKTGHLL-DMFVSTALVAMYAKCGSIDDAEAVFKG-----SALRDTASWNMM 426
           G+ +HS  +  G    D +++T+L+  Y KCGS  +A  VF        + +D   WN +
Sbjct: 68  GKTIHSTIITKGFFYSDPYITTSLINFYFKCGSFGNAVKVFDKLPESEVSGQDVTFWNSI 127

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS-HMGLIEEGKKHFSSIKKIY 485
           + GY + G  ++ +  F  M   G  PD  +  ++L A   H+G  ++   H  S++K++
Sbjct: 128 VNGYFRFGHKKEGIAQFCRMQLFGVRPDAYSLCILLGASDGHLGYAKQ--IHGYSVRKVF 185

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS----WHGNIEL 541
              P ++  + +I +    G+  +      E +   N + W  ++G       W  ++E+
Sbjct: 186 YGDPFLE--SGLIYMYFSCGRPLDAWRLFKELEDKGNVVAWNVMIGGFGENGLWENSLEV 243


>gi|449442767|ref|XP_004139152.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Cucumis sativus]
          Length = 743

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 181/601 (30%), Positives = 309/601 (51%), Gaps = 3/601 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + L ++VF +M + NVV W  ++  Y+  GD      +F  M++   + +  +L ++L G
Sbjct: 100 IHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLLPG 159

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    +     +H + I  G   D  LS S+V+MY KCG   +A ++F  I   D+V+W
Sbjct: 160 ISK---LPLLLCLHCLIILHGFESDLALSNSMVNMYGKCGRIADARRLFQSIDCRDIVSW 216

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++++   + G  +E  ++   M+   +KP++    S + A+   GD R G+ +H ++ K
Sbjct: 217 NSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQTFCSALSASAIKGDLRLGKLVHGLMLK 276

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G   D  V +ALV +Y+    +    +VF++   +D V W A+ S     +  D+ L +
Sbjct: 277 DGLNIDQHVESALVVLYLRCRCLDPAYKVFKSTTEKDVVMWTAMISGLVQNDCADKALGV 336

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           FYQM+    KP+  T    L AC+ L     G  +H + ++  +  +     SLV MY K
Sbjct: 337 FYQMIESNVKPSTATLASGLAACAQLGCCDIGASIHGYVLRQGIMLDIPAQNSLVTMYAK 396

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
              L+ +   F+ +  KDL ++ AI+  +A+ G     +  F +MR   ++ +  T+ S 
Sbjct: 397 CNKLQQSCSIFNKMVEKDLVSWNAIVAGHAKNGYLSKGIFFFNEMRKSFLRPDSITVTSL 456

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L  C     L  G+ +H+  +++  +  +   TALV MY KCG++++A+  F     RD 
Sbjct: 457 LQACGSAGALCQGKWIHNFVLRSSLIPCIMTETALVDMYFKCGNLENAQKCFDCMLQRDL 516

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            +W+ +I GY  +G GE AL  +   L  G  P+ + F+ VLSACSH GLI +G   + S
Sbjct: 517 VAWSTLIVGYGFNGKGEIALRKYSEFLGTGMEPNHVIFISVLSACSHGGLISKGLSIYES 576

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + K + ++P ++H AC++D+L RAGK  E  +F       P+ +V   LL AC  +G +E
Sbjct: 577 MTKDFRMSPNLEHRACVVDLLSRAGKVDEAYSFYKMMFKEPSIVVLGMLLDACRVNGRVE 636

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           L +  A  + EL+P    N+V  ++  A+  RW+        + S G+KK P  S IEV 
Sbjct: 637 LGKVIARDMFELKPVDPGNFVQLANSYASMSRWDGVEKAWTQMRSLGLKKYPGWSSIEVH 696

Query: 601 G 601
           G
Sbjct: 697 G 697



 Score =  221 bits (563), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 152/552 (27%), Positives = 267/552 (48%), Gaps = 8/552 (1%)

Query: 18  SWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMA 77
           S+N+L++  +  G   +V+  + SM+    +   ++  ++ K   N      G  +H   
Sbjct: 16  SFNSLVSRLSYQGAHHQVLQTYISMQKTHTQLDAYTFPSLFKACTNLNLFSHGLSLHQSV 75

Query: 78  IRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAA 137
           +  G + D ++  SL+  Y+K G      KVF  +   +VV W  II    ++G    A 
Sbjct: 76  VVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAF 135

Query: 138 KIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMY 197
            +F  MRES ++P    L SL+   ++         +H +I  +GFESD  + N++V+MY
Sbjct: 136 SMFKQMRESGIQPTSVTLLSLLPGISKLPLL---LCLHCLIILHGFESDLALSNSMVNMY 192

Query: 198 MENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFI 257
            + GR++   R+F++I  +D VSWN+L S +    + ++ L++   M ++  KP+  TF 
Sbjct: 193 GKCGRIADARRLFQSIDCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQTFC 252

Query: 258 VILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK 317
             L A +   D+  GK +H   +K  L+ +  V ++LV +Y +  CL+ A   F S   K
Sbjct: 253 SALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVFKSTTEK 312

Query: 318 DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLH 377
           D+  +TA+I+   Q   A+ AL  F +M    +K +  TLAS L  C+ +     G  +H
Sbjct: 313 DVVMWTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLGCCDIGASIH 372

Query: 378 SIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGE 437
              ++ G +LD+    +LV MYAKC  +  + ++F     +D  SWN ++ G+ K+G   
Sbjct: 373 GYVLRQGIMLDIPAQNSLVTMYAKCNKLQQSCSIFNKMVEKDLVSWNAIVAGHAKNGYLS 432

Query: 438 KALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACM 497
           K +  F  M      PD IT   +L AC   G + +GK   + + +   + P I     +
Sbjct: 433 KGIFFFNEMRKSFLRPDSITVTSLLQACGSAGALCQGKWIHNFVLR-SSLIPCIMTETAL 491

Query: 498 IDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKME 557
           +D+  + G     +    +  L  + + W  L+    ++G  E+  +   +   L   ME
Sbjct: 492 VDMYFKCGNLENAQKCF-DCMLQRDLVAWSTLIVGYGFNGKGEIALRKYSEF--LGTGME 548

Query: 558 SNYV-FPSDISA 568
            N+V F S +SA
Sbjct: 549 PNHVIFISVLSA 560



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 86/267 (32%), Positives = 139/267 (52%), Gaps = 3/267 (1%)

Query: 209 VFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSD 268
           + E+IAH  + S+N+L SR     +  Q L+ +  M     + +  TF  + KAC++L+ 
Sbjct: 5   IHESIAHGCTKSFNSLVSRLSYQGAHHQVLQTYISMQKTHTQLDAYTFPSLFKACTNLNL 64

Query: 269 VGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITS 328
              G  LH   + + L  +  +G+SL+  Y K GC+      FD++  +++  +T II S
Sbjct: 65  FSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGS 124

Query: 329 YAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLD 388
           Y++ G+ ++A   F++MR  GI+    TL S L G   ++ L     LH + +  G   D
Sbjct: 125 YSREGDIDIAFSMFKQMRESGIQPTSVTLLSLLPG---ISKLPLLLCLHCLIILHGFESD 181

Query: 389 MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
           + +S ++V MY KCG I DA  +F+    RD  SWN ++  Y K G  E+ L+  + M  
Sbjct: 182 LALSNSMVNMYGKCGRIADARRLFQSIDCRDIVSWNSLLSAYSKIGATEEILQLLQAMKI 241

Query: 449 EGYVPDEITFVVVLSACSHMGLIEEGK 475
           E   PD+ TF   LSA +  G +  GK
Sbjct: 242 EDIKPDKQTFCSALSASAIKGDLRLGK 268



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 114/265 (43%), Gaps = 10/265 (3%)

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           +G   +S+A+    ++ ++++  +  G     L+ +  M+    + + +T  S    C+ 
Sbjct: 2   SGFIHESIAHGCTKSFNSLVSRLSYQGAHHQVLQTYISMQKTHTQLDAYTFPSLFKACTN 61

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           +   ++G  LH   V  G   D ++ ++L++ YAK G I     VF     R+   W  +
Sbjct: 62  LNLFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTI 121

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           IG Y + G  + A   F+ M + G  P  +T + +L   S +            +  ++G
Sbjct: 122 IGSYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLLPGISKL----PLLLCLHCLIILHG 177

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE--LDEK 544
               +     M+++ G+ G+  +            + + W +LL A S  G  E  L   
Sbjct: 178 FESDLALSNSMVNMYGKCGRIADARRLFQSIDCR-DIVSWNSLLSAYSKIGATEEILQLL 236

Query: 545 DAEKLLELEPKMESNYVFPSDISAT 569
            A K+ +++P  ++   F S +SA+
Sbjct: 237 QAMKIEDIKPDKQT---FCSALSAS 258


>gi|297801640|ref|XP_002868704.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
 gi|297314540|gb|EFH44963.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
          Length = 710

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 177/550 (32%), Positives = 290/550 (52%), Gaps = 4/550 (0%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAI---RLGCALDKFLSCSLVDMYSKCGLADNALKVFY 110
           L+ +LK  ANS Y++ G+ +H   I   +   A D +   SL+++Y KCG    A KVF 
Sbjct: 34  LNELLKVCANSSYLRTGESIHGHLIVTNQSSRAKDVYQINSLINLYVKCGETVRARKVFD 93

Query: 111 RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRES-SVKPNQFVLTSLVRATTETGDQR 169
            + + +VV+W A++      G   E  K+F  M  S   +PN+FV T + ++ + +G   
Sbjct: 94  LMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMVFSDESRPNEFVATVVFKSCSSSGRIE 153

Query: 170 CGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
            G+  H    K G  S   V N LV MY          RV + + + D   +++  S + 
Sbjct: 154 EGKQFHGCFLKSGLMSHEFVRNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFSSALSGYL 213

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
           +  +  +G  +  +M  +    +  T++  L+ CS+L D+   +Q+H+  ++   +    
Sbjct: 214 ECGAFKEGAEVLRRMAKEDLVLDNITYLSCLRLCSNLRDLNLARQIHSRMVRLGFNSEVE 273

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
              ++++MY K G +  A   FD+   +++   T I+ +Y Q    E AL  F KM  + 
Sbjct: 274 ASGAIINMYGKCGKVLYAQRVFDNTHAQNIVLNTTIMDAYFQDKSFEEALNLFSKMDTKE 333

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           +  NE+T A  LN  + ++ L +G LLH + +K+G+   + V  ALV MYAK GSI+DA 
Sbjct: 334 VPPNEYTFAISLNSIAELSLLKHGDLLHGLVLKSGYRNHVMVGNALVNMYAKSGSIEDAR 393

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
             F G   RD  +WN MI G+  HGLG + LEAF  M+  G +P+ ITF+ VL ACSH+G
Sbjct: 394 KAFSGMTFRDIVTWNTMICGFSHHGLGREGLEAFDRMMIAGEIPNRITFIGVLQACSHVG 453

Query: 470 LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENL 529
            +E+G  +F+ + K + + P ++H+ C++ +L +AG F + E+F+    +  + + W  L
Sbjct: 454 FVEQGLYYFNQLMKKFNVQPDLQHYTCIVGLLSKAGMFKDAEDFMRTAPIEWDVVAWRAL 513

Query: 530 LGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589
           L AC    N  L +K AE  +   P     YV  S+I A    W   + VR+L++ +G+K
Sbjct: 514 LNACYVRRNFRLGKKVAEYAIYKYPNDSGVYVLLSNIHAKSREWEGVAEVRSLMNKRGVK 573

Query: 590 KEPSCSWIEV 599
           KEP  SWI +
Sbjct: 574 KEPGVSWIGI 583



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/444 (28%), Positives = 216/444 (48%), Gaps = 6/444 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMK-DMEKKFSKFSLSTVLKGFA 62
           A++VF  MPE NVVSW A++ GY  SG   +V+ LF SM    E + ++F  + V K  +
Sbjct: 88  ARKVFDLMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMVFSDESRPNEFVATVVFKSCS 147

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           +SG I+ G+  H   ++ G    +F+  +LV MYS C     A++V   +   D+  + +
Sbjct: 148 SSGRIEEGKQFHGCFLKSGLMSHEFVRNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFSS 207

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
            ++   + G  +E A++   M +  +  +     S +R  +   D      IH+ + + G
Sbjct: 208 ALSGYLECGAFKEGAEVLRRMAKEDLVLDNITYLSCLRLCSNLRDLNLARQIHSRMVRLG 267

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F S+     A+++MY + G+V Y  RVF+    Q+ V    +   +   +S ++ L +F 
Sbjct: 268 FNSEVEASGAIINMYGKCGKVLYAQRVFDNTHAQNIVLNTTIMDAYFQDKSFEEALNLFS 327

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M  K   PN  TF + L + + LS +  G  LH   +K     + +VG +LV+MY KSG
Sbjct: 328 KMDTKEVPPNEYTFAISLNSIAELSLLKHGDLLHGLVLKSGYRNHVMVGNALVNMYAKSG 387

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            +EDA  AF  +  +D+  +  +I  ++  G     L+ F +M + G   N  T    L 
Sbjct: 388 SIEDARKAFSGMTFRDIVTWNTMICGFSHHGLGREGLEAFDRMMIAGEIPNRITFIGVLQ 447

Query: 363 GCSPVATLANGRLLHSIAVKTGHLL-DMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DT 420
            CS V  +  G    +  +K  ++  D+   T +V + +K G   DAE   + + +  D 
Sbjct: 448 ACSHVGFVEQGLYYFNQLMKKFNVQPDLQHYTCIVGLLSKAGMFKDAEDFMRTAPIEWDV 507

Query: 421 ASWNMMIGG-YVKHG--LGEKALE 441
            +W  ++   YV+    LG+K  E
Sbjct: 508 VAWRALLNACYVRRNFRLGKKVAE 531


>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 180/531 (33%), Positives = 271/531 (51%), Gaps = 42/531 (7%)

Query: 74  HAMAIRLGCALDKFLSCSLVDMYSKCGLADN---ALKVFYRIKDPDVVAWGAIITCLDQQ 130
           HA  ++ G     F +  L+   S    A     A  +F RI +P+   W  II      
Sbjct: 27  HAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYANS 86

Query: 131 GCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVG 190
              + A  IF+ M  +SV P+++  T  +++         G  IH  + K G   D  + 
Sbjct: 87  PTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQ 146

Query: 191 NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFK 250
           N L+ +Y   G +     + + +  +D VSWNAL S + +     +GL            
Sbjct: 147 NTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAE-----RGL------------ 189

Query: 251 PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVA 310
                                  +L  H      + N      ++  Y   G LE+A   
Sbjct: 190 ----------------------MELACHLFDEMTERNVESWNFMISGYVGVGLLEEARRV 227

Query: 311 FDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATL 370
           F     K++ ++ A+IT Y+ AG     L  F  M+  G+K +  TL S L+ C+ V  L
Sbjct: 228 FGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGAL 287

Query: 371 ANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGY 430
           + G  +H+   K G  +D FV+TALV MY+KCGSI+ A  VF     +D ++WN +I G 
Sbjct: 288 SQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGL 347

Query: 431 VKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT 490
             HG G+ AL+ F  ML EG+ P+E+TFV VLSACS  GL++EG++ F+ +  ++GI PT
Sbjct: 348 STHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPT 407

Query: 491 IKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLL 550
           I+H+ CM+D+LGR G   E E  + +      ++VWE+LLGAC  HGN+EL E+ A+KLL
Sbjct: 408 IEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLL 467

Query: 551 ELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           EL P+  S++V  S++ A+ GRW D   VR  + +QG++K+P CS IEVDG
Sbjct: 468 ELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMIEVDG 518



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 115/463 (24%), Positives = 211/463 (45%), Gaps = 45/463 (9%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A  +F  +P  N   WN ++  YA S   +  + +F  M        K++ +  LK   +
Sbjct: 61  AHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGS 120

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ G+ +H   ++ G   D F+  +L+ +Y+ CG  ++A  +  R+ + DVV+W A+
Sbjct: 121 FSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNAL 180

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           ++   ++G  + A  +F+ M E +V+   F                              
Sbjct: 181 LSAYAERGLMELACHLFDEMTERNVESWNF------------------------------ 210

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
                    ++S Y+  G +    RVF     ++ VSWNA+ + +       + L +F  
Sbjct: 211 ---------MISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFED 261

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G KP+ CT + +L AC+ +  +  G+ +HA+  K+ +  +  V T+LVDMY K G 
Sbjct: 262 MQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGS 321

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +E A   F+S   KD+  + +II+  +  G  + AL+ F +M +EG K NE T    L+ 
Sbjct: 322 IEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSA 381

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVST--ALVAMYAKCGSIDDAEAVFKGSALRD-T 420
           CS    L  GR + ++ V   H +   +     +V +  + G +++AE + +    ++ +
Sbjct: 382 CSRAGLLDEGREMFNLMVHV-HGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEAS 440

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
             W  ++G    HG  E A    + +L+    P E +  V LS
Sbjct: 441 VVWESLLGACRNHGNVELAERVAQKLLE--LSPQESSSFVQLS 481



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 158/351 (45%), Gaps = 49/351 (13%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ +   M E +VVSWNALL+ YAE G  +   HLF  M +   +   F +      
Sbjct: 159 IEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLFDEMTERNVESWNFMI------ 212

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              SGY+                                GL + A +VF      +VV+W
Sbjct: 213 ---SGYVGV------------------------------GLLEEARRVFGETPVKNVVSW 239

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+IT     G   E   +F  M+ + VKP+   L S++ A    G    GE +HA I K
Sbjct: 240 NAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDK 299

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G   D  V  ALV MY + G +     VF +   +D  +WN++ S    + S    L+I
Sbjct: 300 NGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQI 359

Query: 241 FYQMLLKGFKPNMCTFIVILKACS--SLSDVG---FGKQLHAHTIKHSLDGNHVVGTSLV 295
           F +ML++GFKPN  TF+ +L ACS   L D G   F   +H H I+ +++        +V
Sbjct: 360 FSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHY----GCMV 415

Query: 296 DMYDKSGCLEDAGVAFDSLANKDL-FAYTAIITSYAQAGEAEMALKCFRKM 345
           D+  + G LE+A      +  K+    + +++ +    G  E+A +  +K+
Sbjct: 416 DLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKL 466



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 126/247 (51%), Gaps = 2/247 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+RVF   P  NVVSWNA++ GY+ +G   +V+ LF  M+    K    +L +VL  
Sbjct: 221 LEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSA 280

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+ G +  G+ VHA   + G ++D F++ +LVDMYSKCG  + AL+VF      D+  W
Sbjct: 281 CAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTW 340

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG-ESIHAVIC 179
            +II+ L   G  Q A +IF+ M     KPN+     ++ A +  G    G E  + ++ 
Sbjct: 341 NSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVH 400

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQD-SVSWNALFSRFQDYESPDQGL 238
            +G +        +V +    G +     + + +  ++ SV W +L    +++ + +   
Sbjct: 401 VHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAE 460

Query: 239 RIFYQML 245
           R+  ++L
Sbjct: 461 RVAQKLL 467


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 197/660 (29%), Positives = 324/660 (49%), Gaps = 105/660 (15%)

Query: 6   RVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSG 65
           ++ K    L V   N L+  YA++G  +   H+F    +M  K S FS +T++ G+A  G
Sbjct: 35  QIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVF---DEMPLK-STFSWNTLISGYAKQG 90

Query: 66  YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT 125
             +  +                                   ++ Y + D D V+W AII 
Sbjct: 91  NFEVSR-----------------------------------RLLYEMPDCDPVSWTAIIV 115

Query: 126 CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
             +Q G    A  +F  M    V P+QF +++++ +         G  IH+ + K G  S
Sbjct: 116 GYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGS 175

Query: 186 ----------------DTLVG---------------NALVSMYMENGRVSYGSRVFEAIA 214
                           D ++                NAL+S+YM++G+    +  FE + 
Sbjct: 176 CVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMP 235

Query: 215 HQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK-GFKPNMCTFIVILKACSSLSDVGFGK 273
            +D VSWN++ S +       + L IF +ML +   KP+  T   IL AC++L  +  GK
Sbjct: 236 DRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGK 295

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV------------------------ 309
           Q+HA+ ++   + +  VG +L+ MY KSG +E A +                        
Sbjct: 296 QIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTK 355

Query: 310 ---------AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
                     F+ L ++D+ A+TA+I  Y Q G    AL+ FR M  EG + N +TLA+ 
Sbjct: 356 LGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAM 415

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK-GSALRD 419
           L+  S +  L +G+ +H+ A+K G      V+ AL+AMYAK G+I+ A+ VF   +  ++
Sbjct: 416 LSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKE 475

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SW  MI    +HGLG++A+  F  ML  G  PD IT+V VLSAC+H+GL+E+G+K+++
Sbjct: 476 IVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYN 535

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
            + +++ I PT+ H+ACMID+ GRAG   E   FI    + P+ + W +LL +C  H N 
Sbjct: 536 MMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNA 595

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +L +  AE+LL ++P     Y+  +++ +  G+W + +  R L+  +G++KE   SWI +
Sbjct: 596 DLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHI 655



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 116/477 (24%), Positives = 199/477 (41%), Gaps = 99/477 (20%)

Query: 158 LVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQD 217
           +++ +    D   G S+H  I K G      + N L++ Y + G + +   VF+ +  + 
Sbjct: 16  ILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKS 75

Query: 218 SVSWNALFSRFQD-----------YESPD--------------------QGLRIFYQMLL 246
           + SWN L S +             YE PD                      + +F +M+ 
Sbjct: 76  TFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMIS 135

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           +   P+  T   +L +C++   +  G+++H+  +K  L     V TSL++MY K G    
Sbjct: 136 ERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVI 195

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM--------------------R 346
           A V FD +  K++  + A+I+ Y Q+G+ E+A   F KM                     
Sbjct: 196 AKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYN 255

Query: 347 LEG------------IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA 394
           LE             +K + FTLAS L+ C+ +  L  G+ +H+  ++        V  A
Sbjct: 256 LEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNA 315

Query: 395 LVAMYAKCGSID---------------------------------DAEAVFKGSALRDTA 421
           L++MYAK G ++                                  A  +F     RD  
Sbjct: 316 LISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVV 375

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSS 480
           +W  MI GYV++GL   ALE FR+M++EG  P+  T   +LS  S + ++E GK+ H S+
Sbjct: 376 AWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASA 435

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           IK     TP++ +   +I +  + G     +            + W +++ A + HG
Sbjct: 436 IKAGESSTPSVTN--ALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHG 490



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 107/407 (26%), Positives = 168/407 (41%), Gaps = 80/407 (19%)

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
           F  IL+    + D   G+ +H   IK  L     +  +L+  Y K+G L  A   FD + 
Sbjct: 13  FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMP 72

Query: 316 NKDLFAYTAIITSYAQAGEAEM-------------------------------ALKCFRK 344
            K  F++  +I+ YA+ G  E+                               A+  F K
Sbjct: 73  LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAK 132

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404
           M  E +  ++FT+++ L+ C+   TL  GR +HS  VK G    + V+T+L+ MYAKCG 
Sbjct: 133 MISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGD 192

Query: 405 IDDAEAVFKGSAL-------------------------------RDTASWNMMIGGYVKH 433
              A+ VF    +                               RD  SWN MI GY + 
Sbjct: 193 PVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQ 252

Query: 434 GLGEKALEAFRMMLDEGYV-PDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK 492
           G   +AL  F  ML+E  + PD  T   +LSAC+++  +  GK+  + I +    T    
Sbjct: 253 GYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAV 312

Query: 493 HFACMIDILGRAGKFTEIENFITETKLTP--NALVWENLLGACSWHGNIELDEKDAEKLL 550
             A +I +  ++G   EI   I E   T   N + + +LL   +  GN++   +   KL 
Sbjct: 313 GNA-LISMYAKSGG-VEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLR 370

Query: 551 ELE----PKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPS 593
           + +      M   YV         G WND   +  L+ ++G   EP+
Sbjct: 371 DRDVVAWTAMIVGYV-------QNGLWNDALELFRLMVNEG--PEPN 408


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 174/596 (29%), Positives = 321/596 (53%), Gaps = 1/596 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF  MP  ++VSWN+L++GY+  G  ++ + ++  +++       F++S+VL  FAN
Sbjct: 160 ARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFAN 219

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +K GQ +H   ++ G      ++  L+ MY K     +A +VF  +   D V +  +
Sbjct: 220 LLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTM 279

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    +    +E+ K+F L      KP+   +TS++ A     D    + I+  + + GF
Sbjct: 280 ICGYLKLEMVEESVKMF-LENLDQFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGF 338

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             ++ V N L+ +Y + G +     VF ++  +D+VSWN++ S +       + +++F  
Sbjct: 339 VLESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKM 398

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M++   + +  T+++++   + L+D+ FGK LH++ IK  +  +  V  +L+DMY K G 
Sbjct: 399 MMIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGE 458

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           + D+   F+S+   D   +  +I++  + G+    L+   +MR   +  +  T    L  
Sbjct: 459 VGDSLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPM 518

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +A    G+ +H   ++ G+  ++ +  AL+ MY+KCG ++ +  VF+  + RD  +W
Sbjct: 519 CASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLESSFRVFERMSRRDVVTW 578

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
             MI  Y  +G GEKALE+F  M   G VPD + F+ ++ ACSH GL+E+G   F  +K 
Sbjct: 579 TGMIYAYGMYGEGEKALESFVDMEKSGIVPDSVVFIALIYACSHSGLVEKGLACFEKMKT 638

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            Y I P I+H+AC++D+L R+ K ++ E FI    + P+A +W ++L AC   G++E  E
Sbjct: 639 HYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIEPDASIWASVLRACRTSGDMETAE 698

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           + + +++EL P      +  S+  A   +W+  S +R  +  + IKK P  SWIE+
Sbjct: 699 RVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSVRDKHIKKNPGYSWIEI 754



 Score =  238 bits (607), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 149/561 (26%), Positives = 284/561 (50%), Gaps = 11/561 (1%)

Query: 7   VFKSM-PELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSG 65
           VF+ + P  NV  WN+++  ++++G   K +  +  +++ +    K++  +V+K  A   
Sbjct: 61  VFRRVSPAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLF 120

Query: 66  YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT 125
             + G +V+   + +G   D ++  +LVDMYS+ GL   A +VF  +   D+V+W ++I+
Sbjct: 121 DAEMGDLVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLIS 180

Query: 126 CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
                G  +EA +I++ +R S + P+ F ++S++ A       + G+ +H    K G  S
Sbjct: 181 GYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNS 240

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
            ++V N L++MY++  R +   RVF+ +  +DSV++N +   +   E  ++ +++F +  
Sbjct: 241 VSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLEN- 299

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
           L  FKP++ T   +L AC  L D+   K ++ + ++        V   L+D+Y K G + 
Sbjct: 300 LDQFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMI 359

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
            A   F+S+  KD  ++ +II+ Y Q+G+   A+K F+ M +   +++  T    ++  +
Sbjct: 360 TARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLST 419

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
            +A L  G+ LHS  +K+G  +D+ VS AL+ MYAKCG + D+  +F      DT +WN 
Sbjct: 420 RLADLKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNT 479

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIY 485
           +I   V+ G     L+    M     VPD  TF+V L  C+ +     GK+    + + +
Sbjct: 480 VISACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLR-F 538

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKD 545
           G    ++    +I++  + G   E    + E     + + W  ++ A   +G       +
Sbjct: 539 GYESELQIGNALIEMYSKCGCL-ESSFRVFERMSRRDVVTWTGMIYAYGMYG-------E 590

Query: 546 AEKLLELEPKMESNYVFPSDI 566
            EK LE    ME + + P  +
Sbjct: 591 GEKALESFVDMEKSGIVPDSV 611



 Score =  218 bits (554), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 145/516 (28%), Positives = 256/516 (49%), Gaps = 13/516 (2%)

Query: 50  SKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF 109
           ++ S + + +  ++S  +   + +HA+ I LG     F S  L+D YS      ++L VF
Sbjct: 3   TRVSSAFISRALSSSSNLNELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVF 62

Query: 110 YRIKDP-DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ 168
            R+    +V  W +II    + G   +A + +  +RES V P+++   S+++A     D 
Sbjct: 63  RRVSPAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDA 122

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228
             G+ ++  I + GFESD  VGNALV MY   G +S   +VF+ +  +D VSWN+L S +
Sbjct: 123 EMGDLVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGY 182

Query: 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH 288
             +   ++ L I++++      P+  T   +L A ++L  V  G+ LH  T+K  ++   
Sbjct: 183 SSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVS 242

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
           VV   L+ MY K     DA   FD +  +D   Y  +I  Y +    E ++K F +  L+
Sbjct: 243 VVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLE-NLD 301

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
             K +  T+ S L  C  +  L+  + +++  ++ G +L+  V   L+ +YAKCG +  A
Sbjct: 302 QFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITA 361

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
             VF     +DT SWN +I GY++ G   +A++ F+MM+      D IT+++++S  + +
Sbjct: 362 RDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRL 421

Query: 469 GLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWE 527
             ++ GK  H + IK   GI   +     +ID+  + G+  +    I  +  T + + W 
Sbjct: 422 ADLKFGKGLHSNGIKS--GIYIDLSVSNALIDMYAKCGEVGDSLK-IFNSMGTLDTVTWN 478

Query: 528 NLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFP 563
            ++ AC   G       D    L++  +M  N V P
Sbjct: 479 TVISACVRFG-------DFATGLQVTTQMRKNKVVP 507



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 137/264 (51%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A+ VF SM   + VSWN++++GY +SGD  + M LF  M  ME++    +   ++  
Sbjct: 358 MITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISL 417

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 +K G+ +H+  I+ G  +D  +S +L+DMY+KCG   ++LK+F  +   D V W
Sbjct: 418 STRLADLKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTW 477

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+   + G      ++   MR++ V P+       +        +R G+ IH  + +
Sbjct: 478 NTVISACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLR 537

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +G+ES+  +GNAL+ MY + G +    RVFE ++ +D V+W  +   +  Y   ++ L  
Sbjct: 538 FGYESELQIGNALIEMYSKCGCLESSFRVFERMSRRDVVTWTGMIYAYGMYGEGEKALES 597

Query: 241 FYQMLLKGFKPNMCTFIVILKACS 264
           F  M   G  P+   FI ++ ACS
Sbjct: 598 FVDMEKSGIVPDSVVFIALIYACS 621


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 191/597 (31%), Positives = 293/597 (49%), Gaps = 88/597 (14%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F SMPE +VVSWNA+L+GY  SG   +   +F    D     +  S + +L     
Sbjct: 114 ARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVF----DRMPHKNSISWNGLL----- 164

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCS-LVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           + Y+++G++  A  +    +  + +SC+ L+  Y K  +  +A ++F +I   D+++W  
Sbjct: 165 AAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNT 224

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I+   Q G   +A ++F    ES V+                                 
Sbjct: 225 MISGYAQDGDLSQARRLFE---ESPVR--------------------------------- 248

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
              D     A+V  Y+++G +    RVF+ +  +  +S+N + + +  Y+  D G  +F 
Sbjct: 249 ---DVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFE 305

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M      PN+ ++ +++                                     Y ++G
Sbjct: 306 EMPF----PNIGSWNIMISG-----------------------------------YCQNG 326

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            L  A   FD +  +D  ++ AII  YAQ G  E A+    +M+ +G   N  T    L+
Sbjct: 327 DLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALS 386

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+ +A L  G+ +H   V+TG+     V  ALV MY KCG ID+A  VF+G   +D  S
Sbjct: 387 ACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVS 446

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN M+ GY +HG G +AL  F  M+  G  PDEIT V VLSACSH GL + G ++F S+ 
Sbjct: 447 WNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMN 506

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           K YGITP  KH+ACMID+LGRAG   E +N I      P+A  W  LLGA   HGN+EL 
Sbjct: 507 KDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELG 566

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           E+ AE + ++EP     YV  S++ A  GRW D S +R  +   G++K P  SW+EV
Sbjct: 567 EQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEV 623



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 157/375 (41%), Gaps = 81/375 (21%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAES---GDGQKVMHLFCSMKDMEKKFSKFSLSTV 57
           +E A+R+F+S  +  ++S N L+ GY +    GD +++      ++D+       S +T+
Sbjct: 173 LEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQI-PVRDL------ISWNTM 225

Query: 58  LKGFANSGYI-KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF------- 109
           + G+A  G + +A ++     +R     D F   ++V  Y + G+ D A +VF       
Sbjct: 226 ISGYAQDGDLSQARRLFEESPVR-----DVFTWTAMVYAYVQDGMLDEARRVFDEMPQKR 280

Query: 110 -------------YRIKD-----------PDVVAW------------------------- 120
                        Y+  D           P++ +W                         
Sbjct: 281 EMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQ 340

Query: 121 ------GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
                  AII    Q G  +EA  +   M+      N+      + A  +      G+ +
Sbjct: 341 RDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQV 400

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H  + + G+E   LVGNALV MY + G +     VF+ + H+D VSWN + + +  +   
Sbjct: 401 HGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFG 460

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACS--SLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
            Q L +F  M+  G KP+  T + +L ACS   L+D G  +  H+    + +  N     
Sbjct: 461 RQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRG-TEYFHSMNKDYGITPNSKHYA 519

Query: 293 SLVDMYDKSGCLEDA 307
            ++D+  ++GCLE+A
Sbjct: 520 CMIDLLGRAGCLEEA 534



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/315 (20%), Positives = 124/315 (39%), Gaps = 75/315 (23%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYA-------------------------------ES 29
           ++ A+RVF  MP+   +S+N ++ GYA                               ++
Sbjct: 266 LDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQN 325

Query: 30  GDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY----------------------- 66
           GD  +  +LF    DM  +    S + ++ G+A +G                        
Sbjct: 326 GDLAQARNLF----DMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTF 381

Query: 67  ------------IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
                       ++ G+ VH   +R G      +  +LV MY KCG  D A  VF  ++ 
Sbjct: 382 CCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQH 441

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG-DQRCGES 173
            D+V+W  ++    + G  ++A  +F  M  + VKP++  +  ++ A + TG   R  E 
Sbjct: 442 KDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEY 501

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-DSVSWNALF--SRFQ- 229
            H++   YG   ++     ++ +    G +     +   +  + D+ +W AL   SR   
Sbjct: 502 FHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHG 561

Query: 230 DYESPDQGLRIFYQM 244
           + E  +Q   + ++M
Sbjct: 562 NMELGEQAAEMVFKM 576



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/239 (20%), Positives = 102/239 (42%), Gaps = 37/239 (15%)

Query: 282 HSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKC 341
           H  D + V  T  +  + ++G  + A   FD++  ++  +Y A+I+ Y +  +  +A   
Sbjct: 27  HFEDPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDL 86

Query: 342 FRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAK 401
           F KM  + +    F+    L G +    L + R+L     +     D+    A+++ Y +
Sbjct: 87  FDKMPHKDL----FSWNLMLTGYARNRRLRDARMLFDSMPEK----DVVSWNAMLSGYVR 138

Query: 402 CGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF------------------ 443
            G +D+A  VF     +++ SWN ++  YV+ G  E+A   F                  
Sbjct: 139 SGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGY 198

Query: 444 ---------RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF--SSIKKIYGITPTI 491
                    R + D+  V D I++  ++S  +  G + + ++ F  S ++ ++  T  +
Sbjct: 199 VKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMV 257


>gi|297819724|ref|XP_002877745.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323583|gb|EFH54004.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 764

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 189/605 (31%), Positives = 325/605 (53%), Gaps = 6/605 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGD-GQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           +E A+++F  MPE NVVS+NAL + Y+ + D       L   M     K +  + +++++
Sbjct: 61  LEQARKLFDKMPERNVVSYNALYSAYSRNLDYASYAFSLINQMASESLKPNSSTFTSLVQ 120

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
                  +  G ++H+  I+LG + +  +  S++ MYS CG  ++A ++F  +   D VA
Sbjct: 121 VCTVLEDVLMGSLLHSQIIKLGYSDNVVVQTSVLGMYSSCGDLESARRIFECVNGGDAVA 180

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR--CGESIHAV 177
           W  +I  + +    ++   +F  M  S V P QF  + ++ A ++ G  R   G+ IHA 
Sbjct: 181 WNTMIVGIFRNDKIEDGLMLFRSMLMSGVDPTQFTYSMVLNACSKLGSYRYSVGKLIHAR 240

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
           +      +D  V NAL+ MY   G +     VF  I + + VSWN++ S   +    +Q 
Sbjct: 241 MIVSDILADLPVENALLDMYCSCGDMKEAFYVFGKIHNPNLVSWNSIISGCSENGFGEQA 300

Query: 238 LRIFYQML-LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
           + ++ ++L +   +P+  TF   + A +       GK LH    K   + +  VGT+L+ 
Sbjct: 301 ILMYRRLLRISTPRPDEYTFSAAIPATAEPEKFIHGKLLHGQVTKLGYERSVFVGTTLLS 360

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           MY K+G  E A   F  +  +D+  +T +I   ++ G +E A++ F +M  E  +++ F+
Sbjct: 361 MYFKNGEAESAQKVFGVITERDVVLWTEMIVGESRVGNSECAVQLFIEMYREKNRTDGFS 420

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
           L+S L  CS +A L  G++ HS+A+KTG    M VS ALV MY K G  + AE++F   +
Sbjct: 421 LSSVLGACSDMAMLRQGQVFHSLAIKTGFDNVMSVSGALVDMYGKNGKYETAESIFSLVS 480

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
             D   WN M+G Y +HG+ EKA   F  +L+ G+ PD +T++ +L+ACSH G  +EGK 
Sbjct: 481 NPDLKCWNSMLGAYSQHGMVEKAQSFFEQILENGFTPDAVTYLSLLAACSHKGSTQEGKF 540

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPN-ALVWENLLGACSW 535
            ++ +K+  GIT   KH++CM+ ++ +AG   E    I ++    N A +W  LL AC  
Sbjct: 541 LWNQMKE-QGITAGFKHYSCMVSLVSKAGLLGEALELIKQSPPENNQAELWRTLLSACVN 599

Query: 536 HGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCS 595
             N+++    A+++L+L+P+  + ++  S++ A  GRW D + +R  +      K+P  S
Sbjct: 600 ARNLQIGLYAADQILKLDPEDTATHILLSNLYAVNGRWKDVAEMRRKIRGLASAKDPGLS 659

Query: 596 WIEVD 600
           WIEV+
Sbjct: 660 WIEVN 664



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/486 (28%), Positives = 242/486 (49%), Gaps = 9/486 (1%)

Query: 73  VHAMAIRLGC---ALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
           +HA+ +  G    +   + + +L+ MY +CG  + A K+F ++ + +VV++ A+ +   +
Sbjct: 29  LHAIILTAGAGSASESPYKNNNLISMYVRCGSLEQARKLFDKMPERNVVSYNALYSAYSR 88

Query: 130 Q-GCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTL 188
                  A  + N M   S+KPN    TSLV+  T   D   G  +H+ I K G+  + +
Sbjct: 89  NLDYASYAFSLINQMASESLKPNSSTFTSLVQVCTVLEDVLMGSLLHSQIIKLGYSDNVV 148

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG 248
           V  +++ MY   G +    R+FE +   D+V+WN +       +  + GL +F  ML+ G
Sbjct: 149 VQTSVLGMYSSCGDLESARRIFECVNGGDAVAWNTMIVGIFRNDKIEDGLMLFRSMLMSG 208

Query: 249 FKPNMCTFIVILKACSSLSDVGF--GKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
             P   T+ ++L ACS L    +  GK +HA  I   +  +  V  +L+DMY   G +++
Sbjct: 209 VDPTQFTYSMVLNACSKLGSYRYSVGKLIHARMIVSDILADLPVENALLDMYCSCGDMKE 268

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRK-MRLEGIKSNEFTLASCLNGCS 365
           A   F  + N +L ++ +II+  ++ G  E A+  +R+ +R+   + +E+T ++ +   +
Sbjct: 269 AFYVFGKIHNPNLVSWNSIISGCSENGFGEQAILMYRRLLRISTPRPDEYTFSAAIPATA 328

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
                 +G+LLH    K G+   +FV T L++MY K G  + A+ VF     RD   W  
Sbjct: 329 EPEKFIHGKLLHGQVTKLGYERSVFVGTTLLSMYFKNGEAESAQKVFGVITERDVVLWTE 388

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIY 485
           MI G  + G  E A++ F  M  E    D  +   VL ACS M ++ +G+  F S+    
Sbjct: 389 MIVGESRVGNSECAVQLFIEMYREKNRTDGFSLSSVLGACSDMAMLRQGQV-FHSLAIKT 447

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKD 545
           G    +     ++D+ G+ GK+   E+  +     P+   W ++LGA S HG +E  +  
Sbjct: 448 GFDNVMSVSGALVDMYGKNGKYETAESIFSLVS-NPDLKCWNSMLGAYSQHGMVEKAQSF 506

Query: 546 AEKLLE 551
            E++LE
Sbjct: 507 FEQILE 512



 Score = 43.5 bits (101), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 4/125 (3%)

Query: 364 CSPVATLANGRLLHSIAVKTGH---LLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           C  +  L     LH+I +  G        + +  L++MY +CGS++ A  +F     R+ 
Sbjct: 17  CVSITALKRACQLHAIILTAGAGSASESPYKNNNLISMYVRCGSLEQARKLFDKMPERNV 76

Query: 421 ASWNMMIGGYVKH-GLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
            S+N +   Y ++      A      M  E   P+  TF  ++  C+ +  +  G    S
Sbjct: 77  VSYNALYSAYSRNLDYASYAFSLINQMASESLKPNSSTFTSLVQVCTVLEDVLMGSLLHS 136

Query: 480 SIKKI 484
            I K+
Sbjct: 137 QIIKL 141


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 160/467 (34%), Positives = 265/467 (56%), Gaps = 6/467 (1%)

Query: 134 QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNAL 193
             A +  + M    V  +    + L++  +  G  + G+ +H  I   G+E    V N L
Sbjct: 37  HRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTL 96

Query: 194 VSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
           ++MY++   +     +F+ +  ++ VSW  + S + + +  D+ L+    M  +G +PNM
Sbjct: 97  LNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSN-KLNDKALKCLILMFREGVRPNM 155

Query: 254 CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
            T+  +L+AC  L ++   +QLH   IK  L+ +  V ++L+D+Y K   L++A   FD 
Sbjct: 156 FTYSSVLRACDGLPNL---RQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDE 212

Query: 314 LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG 373
           +  +DL  + +II  +AQ  +   AL  F++M+  G  +++ TL S L  C+ +A L  G
Sbjct: 213 MPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELG 272

Query: 374 RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKH 433
           R +H   +K     D+ ++ AL+ MY KCGS++DA + F     +D  SW+ M+ G  ++
Sbjct: 273 RQVHVHVLKFDQ--DLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQN 330

Query: 434 GLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKH 493
           G   +ALE F  M + G  P+ IT + VL ACSH GL+E+G  +F S+KK++G+ P  +H
Sbjct: 331 GYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREH 390

Query: 494 FACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELE 553
           + C+ID+LGRAG+  E    I E +  P+++ W  LLGAC  H N++L    A+K++ELE
Sbjct: 391 YGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELE 450

Query: 554 PKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           P+    Y+  S+I A   RW D + VR  ++++GI+K P CSWIEVD
Sbjct: 451 PEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVD 497



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 116/463 (25%), Positives = 214/463 (46%), Gaps = 25/463 (5%)

Query: 12  PELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKK---FSKFSLSTVLKGFANSGYIK 68
           P   V   + L+N +A       +     +M  ME+        + S ++K  +  G ++
Sbjct: 13  PLRYVADPSPLVNEFANFCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQ 72

Query: 69  AGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLD 128
            G+ VH      G     F+  +L++MY K  L + A  +F  + + +VV+W  +I+   
Sbjct: 73  EGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYS 132

Query: 129 QQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTL 188
            +    +A K   LM    V+PN F  +S++RA     + R    +H  I K G ESD  
Sbjct: 133 NK-LNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNLR---QLHCGIIKTGLESDVF 188

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG 248
           V +AL+ +Y +   +     VF+ +  +D V WN++   F      ++ L +F +M   G
Sbjct: 189 VRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAG 248

Query: 249 FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAG 308
           F  +  T   +L+AC+ L+ +  G+Q+H H +K   D + ++  +L+DMY K G LEDA 
Sbjct: 249 FLADQATLTSVLRACTGLALLELGRQVHVHVLK--FDQDLILNNALIDMYCKCGSLEDAN 306

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
            AF  +  KD+ +++ ++   AQ G +  AL+ F  M+  G + N  T+   L  CS   
Sbjct: 307 SAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAG 366

Query: 369 TLANG-------RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA-EAVFKGSALRDT 420
            +  G       + L  +     H         L+ +  + G +D+A + + +     D+
Sbjct: 367 LVEKGWYYFRSMKKLFGVDPGREHY------GCLIDLLGRAGRLDEAVKLIHEMECEPDS 420

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
            +W  ++G    H   + A+ A + +++    P++    ++LS
Sbjct: 421 VTWRTLLGACRVHRNVDLAIYAAKKIIE--LEPEDAGTYILLS 461



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 132/252 (52%), Gaps = 4/252 (1%)

Query: 225 FSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL 284
           F+ F       + +R    M   G   +  T+  ++K CS+   V  GK++H H      
Sbjct: 27  FANFCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGY 86

Query: 285 DGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRK 344
           +    V  +L++MY K   LE+A   FD +  +++ ++T +I++Y+     + ALKC   
Sbjct: 87  EPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSNKLN-DKALKCLIL 145

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404
           M  EG++ N FT +S L  C     L N R LH   +KTG   D+FV +AL+ +Y+K   
Sbjct: 146 MFREGVRPNMFTYSSVLRACD---GLPNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSD 202

Query: 405 IDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
           +D+A  VF     RD   WN +IGG+ ++  G +AL  F+ M   G++ D+ T   VL A
Sbjct: 203 LDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRA 262

Query: 465 CSHMGLIEEGKK 476
           C+ + L+E G++
Sbjct: 263 CTGLALLELGRQ 274



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 131/264 (49%), Gaps = 6/264 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ +F  MPE NVVSW  +++ Y+   + + +  L    ++  +  + F+ S+VL+ 
Sbjct: 106 LEEAEDLFDEMPERNVVSWTTMISAYSNKLNDKALKCLILMFREGVRP-NMFTYSSVLR- 163

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A  G     Q+ H   I+ G   D F+  +L+D+YSK    DNAL VF  +   D+V W
Sbjct: 164 -ACDGLPNLRQL-HCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVW 221

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +II    Q     EA  +F  M+ +    +Q  LTS++RA T       G  +H  + K
Sbjct: 222 NSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLK 281

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             F+ D ++ NAL+ MY + G +   +  F  +  +D +SW+ + +         Q L +
Sbjct: 282 --FDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALEL 339

Query: 241 FYQMLLKGFKPNMCTFIVILKACS 264
           F  M   G +PN  T + +L ACS
Sbjct: 340 FESMKESGSRPNYITVLGVLFACS 363



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 96/207 (46%), Gaps = 10/207 (4%)

Query: 328 SYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL 387
           ++    +   A++    M   G+ ++  T +  +  CS    +  G+ +H      G+  
Sbjct: 29  NFCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEP 88

Query: 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML 447
            MFV   L+ MY K   +++AE +F     R+  SW  MI  Y  + L +KAL+   +M 
Sbjct: 89  KMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAY-SNKLNDKALKCLILMF 147

Query: 448 DEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKF 507
            EG  P+  T+  VL AC   GL    + H   IK   G+   +   + +ID+     K+
Sbjct: 148 REGVRPNMFTYSSVLRACD--GLPNLRQLHCGIIKT--GLESDVFVRSALIDVY---SKW 200

Query: 508 TEIENF--ITETKLTPNALVWENLLGA 532
           ++++N   + +   T + +VW +++G 
Sbjct: 201 SDLDNALGVFDEMPTRDLVVWNSIIGG 227


>gi|297834340|ref|XP_002885052.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330892|gb|EFH61311.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 652

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 180/537 (33%), Positives = 285/537 (53%), Gaps = 12/537 (2%)

Query: 69  AGQVVHAMAIRLGCALDKFLSC-SLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127
           +GQ +H   +R G   D   +  SLV+MY+KCGL   A+ VF    + DV  + A+I+  
Sbjct: 77  SGQQIHGFMVRKGFLDDSPRAVTSLVNMYAKCGLMRRAVLVFGG-SERDVFGYNALISGF 135

Query: 128 DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRAT--TETGDQRCGESIHAVICKYGFES 185
              G   +A  ++  MR   + P+++   SL++ +   E  D +    +HA+  K GF S
Sbjct: 136 VVNGSPLDAMDMYREMRAKGILPDKYTFPSLLKGSDAMEVSDVK---KVHALAFKLGFVS 192

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQD-SVSWNALFSRFQDYESPDQGLRIFYQM 244
           D  VG+ALV+ Y +   V    +VF+ +  +D SV WNAL + +      +  L +F +M
Sbjct: 193 DCYVGSALVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVNGYSHIFRFEDALIVFSKM 252

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
             +G   +  T   +L + +   D+  G+ +H   +K   D   VV  +L+D+Y KS  L
Sbjct: 253 REEGVAMSRHTITSVLSSFTVSGDLDNGRSIHGLAVKMGFDSGIVVSNALIDLYGKSKWL 312

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
           E+A   F+++  +DLF + +++  +   G+ +  L  F  M   GI+ +  TL + L  C
Sbjct: 313 EEANSIFEAMDERDLFTWNSVLCVHDYCGDHDGTLALFETMLCSGIRPDIVTLTTVLPTC 372

Query: 365 SPVATLANGRLLHSIAVKTGHL----LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
             +A+L  GR +H   + +G L     + F+  +L+ MY KCG + DA  VF    ++D+
Sbjct: 373 GRLASLKQGREIHGYMIASGLLNRKSSNGFIHNSLMDMYVKCGDLRDARMVFDSMRVKDS 432

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
           ASWN+MI GY     GE AL+ F  M   G  PDEITFV +L ACSH G + EG+   + 
Sbjct: 433 ASWNIMINGYGVQSCGELALDMFSCMCRAGVKPDEITFVGLLQACSHSGFVNEGRNFLAQ 492

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           ++ +Y I PT  H+AC+ID+LGRA K  E  +      +  N +VW ++L +C  HGN +
Sbjct: 493 METLYNILPTSDHYACVIDMLGRADKLEEAYDLAISMPICDNPVVWRSILSSCRLHGNKD 552

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           L     ++L ELEP+    YV  S++     ++ +   VR  +  Q +KK P CSWI
Sbjct: 553 LAVVAGKRLYELEPEHCGVYVLMSNVYVEAKKYEEVLDVRDTMKEQNVKKTPGCSWI 609



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/367 (30%), Positives = 187/367 (50%), Gaps = 6/367 (1%)

Query: 13  ELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQV 72
           E +V  +NAL++G+  +G     M ++  M+       K++  ++LKG +++  +   + 
Sbjct: 122 ERDVFGYNALISGFVVNGSPLDAMDMYREMRAKGILPDKYTFPSLLKG-SDAMEVSDVKK 180

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD-PDVVAWGAIITCLDQQG 131
           VHA+A +LG   D ++  +LV  YSK    ++A KVF  + D  D V W A++       
Sbjct: 181 VHALAFKLGFVSDCYVGSALVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVNGYSHIF 240

Query: 132 CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGN 191
             ++A  +F+ MRE  V  ++  +TS++ + T +GD   G SIH +  K GF+S  +V N
Sbjct: 241 RFEDALIVFSKMREEGVAMSRHTITSVLSSFTVSGDLDNGRSIHGLAVKMGFDSGIVVSN 300

Query: 192 ALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKP 251
           AL+ +Y ++  +   + +FEA+  +D  +WN++          D  L +F  ML  G +P
Sbjct: 301 ALIDLYGKSKWLEEANSIFEAMDERDLFTWNSVLCVHDYCGDHDGTLALFETMLCSGIRP 360

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL----DGNHVVGTSLVDMYDKSGCLEDA 307
           ++ T   +L  C  L+ +  G+++H + I   L      N  +  SL+DMY K G L DA
Sbjct: 361 DIVTLTTVLPTCGRLASLKQGREIHGYMIASGLLNRKSSNGFIHNSLMDMYVKCGDLRDA 420

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367
            + FDS+  KD  ++  +I  Y      E+AL  F  M   G+K +E T    L  CS  
Sbjct: 421 RMVFDSMRVKDSASWNIMINGYGVQSCGELALDMFSCMCRAGVKPDEITFVGLLQACSHS 480

Query: 368 ATLANGR 374
             +  GR
Sbjct: 481 GFVNEGR 487



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 174/354 (49%), Gaps = 11/354 (3%)

Query: 1   MELAKRVFKSMPELN-VVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           +E A++VF  +P+ +  V WNAL+NGY+     +  + +F  M++     S+ ++++VL 
Sbjct: 210 VEDAQKVFDELPDRDDSVLWNALVNGYSHIFRFEDALIVFSKMREEGVAMSRHTITSVLS 269

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
            F  SG +  G+ +H +A+++G      +S +L+D+Y K    + A  +F  + + D+  
Sbjct: 270 SFTVSGDLDNGRSIHGLAVKMGFDSGIVVSNALIDLYGKSKWLEEANSIFEAMDERDLFT 329

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W +++   D  G       +F  M  S ++P+   LT+++         + G  IH  + 
Sbjct: 330 WNSVLCVHDYCGDHDGTLALFETMLCSGIRPDIVTLTTVLPTCGRLASLKQGREIHGYMI 389

Query: 180 KYGF----ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD 235
             G      S+  + N+L+ MY++ G +     VF+++  +DS SWN + + +      +
Sbjct: 390 ASGLLNRKSSNGFIHNSLMDMYVKCGDLRDARMVFDSMRVKDSASWNIMINGYGVQSCGE 449

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAH--TIKHSLD-GNHVVGT 292
             L +F  M   G KP+  TF+ +L+ACS    V  G+   A   T+ + L   +H    
Sbjct: 450 LALDMFSCMCRAGVKPDEITFVGLLQACSHSGFVNEGRNFLAQMETLYNILPTSDHY--A 507

Query: 293 SLVDMYDKSGCLEDA-GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM 345
            ++DM  ++  LE+A  +A       +   + +I++S    G  ++A+   +++
Sbjct: 508 CVIDMLGRADKLEEAYDLAISMPICDNPVVWRSILSSCRLHGNKDLAVVAGKRL 561


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 176/535 (32%), Positives = 281/535 (52%), Gaps = 41/535 (7%)

Query: 105 ALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTE 164
           A+ VF  I +P+ + W  +            A K++ +M    + PN F    L+++  +
Sbjct: 28  AISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAK 87

Query: 165 TGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-------- 216
           +   + G+ IH  + K GF+ D  V  +L+SMY +NGR+    +VF+  +H+        
Sbjct: 88  SKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTAL 147

Query: 217 -----------------------DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
                                  D VSWNA+ S + +  +  + L +F +M+    KP+ 
Sbjct: 148 ITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDE 207

Query: 254 CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
            T   ++ AC+    +  G+Q+H+    H    N  +  +L+D+Y K G +E A    + 
Sbjct: 208 STMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEG 267

Query: 314 LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG 373
           L+NKD+ ++  +I  Y      + AL  F++M   G   N+ T+ S L  C+ +  +  G
Sbjct: 268 LSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG 327

Query: 374 RLLHSIAVKTGHLLDMFVS------TALVAMYAKCGSIDDAEAVFKGSAL-RDTASWNMM 426
           R +H    K   L  + V+      T+L+ MYAKCG ID A  V   SA  R  ++WN M
Sbjct: 328 RWIHVYIDKK--LKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAM 385

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           I G+  HG    A + F  M   G  PD+ITFV +LSACSH G+++ G+  F S+++ Y 
Sbjct: 386 IFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYN 445

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDA 546
           ITP ++H+ CMID+LG +G F E E  I    + P+ ++W +LL AC  HGN+EL E  A
Sbjct: 446 ITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFA 505

Query: 547 EKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE-PSCSWIEVD 600
           +KL+++EP+   +YV  S+I AT G+WN+   +R LL+ +G+KK+ P CS IE+D
Sbjct: 506 KKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEID 560



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 154/553 (27%), Positives = 247/553 (44%), Gaps = 75/553 (13%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A  VF+++PE N + WN +  G+A S D    + L+  M  +    + F+   +LK 
Sbjct: 25  LPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKS 84

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYR--------- 111
            A S   K GQ +H   ++LG  LD ++  SL+ MY++ G  ++A KVF R         
Sbjct: 85  CAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSY 144

Query: 112 ----------------------IKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK 149
                                 I   DVV+W A+I+   + G  ++A ++F  M +++VK
Sbjct: 145 TALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVK 204

Query: 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRV 209
           P++  + ++V A  ++G    G  +H+ I  +GF S+  + NAL+ +Y + G V     +
Sbjct: 205 PDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACEL 264

Query: 210 FEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDV 269
            E ++++D +SWN L   +       + L +F +ML  G  PN  T + IL AC+ L  +
Sbjct: 265 LEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 324

Query: 270 GFGKQLHAHTIKHSLDGNHVVG-----TSLVDMYDKSGCLEDAGVAFDSLA-NKDLFAYT 323
             G+ +H + I   L G  V       TSL+DMY K G ++ A    DS A N+ L  + 
Sbjct: 325 DIGRWIHVY-IDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWN 383

Query: 324 AIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKT 383
           A+I  +A  G A  A   F +MR  GI+ ++ T    L+ CS    L  GR         
Sbjct: 384 AMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGR--------- 434

Query: 384 GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF 443
               ++F S              D     K         +  MI      GL ++A E  
Sbjct: 435 ----NIFRSMR-----------QDYNITPK------LEHYGCMIDLLGHSGLFKEAEEMI 473

Query: 444 RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITP-TIKHFACMIDILG 502
             M  E   PD + +  +L AC   G +E G+   S  KK+  I P     +  + +I  
Sbjct: 474 NTMPME---PDGVIWCSLLKACKIHGNLELGE---SFAKKLIKIEPENPGSYVLLSNIYA 527

Query: 503 RAGKFTEIENFIT 515
            AGK+ E+    T
Sbjct: 528 TAGKWNEVXKIRT 540


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 184/595 (30%), Positives = 310/595 (52%), Gaps = 41/595 (6%)

Query: 42  MKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGL 101
           M   + KF  F    +LK  A       G+ +HA+ ++   A   +LS   V++YSKCG 
Sbjct: 1   MNQTQWKFKSFR-DLLLKSVAERDLF-TGKSLHALYVKSIVASSTYLSNHFVNLYSKCGC 58

Query: 102 ADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFN-------------------- 141
              A   F   ++P+V ++  I+    +      A ++F+                    
Sbjct: 59  LSYARAAFDSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADA 118

Query: 142 -----------LMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVG 190
                       MRE   + + F L+ L+ A  +  D    + +H      GF+S + V 
Sbjct: 119 RETVAAMVLFKRMRELGFEVDGFTLSGLIAACCDRVD--LIKQLHCFAVSGGFDSYSSVN 176

Query: 191 NALVSMYMENGRVSYGSRVFEAI-AHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
           NA V+ Y + G +     VF  +   +D VSWN++   +  ++   + L ++ +M+ KGF
Sbjct: 177 NAFVTYYSKGGLLREAVSVFYGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGF 236

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC---LED 306
           K +M T   +L A +SL  +  G+Q H   IK     N  VG+ L+D Y K G    + D
Sbjct: 237 KIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSD 296

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGE-AEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
           +   F  + + DL  +  +I+ Y+   E +E A+K FR+M+  G + ++ +     + CS
Sbjct: 297 SEKVFQEILSPDLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACS 356

Query: 366 PVATLANGRLLHSIAVKTGHLLDMF-VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
            +++ + G+ +H +A+K+    +   V+ AL+++Y K G++ DA  VF      +  S+N
Sbjct: 357 NLSSPSQGKQIHGLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMPELNAVSFN 416

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
            MI GY +HG G +AL  ++ MLD G  P+ ITFV +LSAC+H G ++EG+K+F+++K+ 
Sbjct: 417 CMIKGYAQHGHGTEALRLYQRMLDSGIAPNNITFVAILSACAHCGKVDEGQKYFNTMKET 476

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEK 544
           + I P  +H++CMID+LGRAGK  E E FI      P ++ W  LLGAC  H N+ L E+
Sbjct: 477 FKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAER 536

Query: 545 DAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            A++L+ ++P   + YV  +++ A  G+W + + VR  +  + I+K+P CSWIEV
Sbjct: 537 AAKELMVMQPLAATPYVMLANMYADAGKWEEMASVRKSMRGKRIRKKPGCSWIEV 591



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 125/467 (26%), Positives = 226/467 (48%), Gaps = 19/467 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + +A+++F   P+ + VS+N L++GYA++ +    M LF  M+++  +   F+LS ++  
Sbjct: 90  IHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMRELGFEVDGFTLSGLIAA 149

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD-PDVVA 119
             +   +   + +H  A+  G      ++ + V  YSK GL   A+ VFY +    D V+
Sbjct: 150 CCDR--VDLIKQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDGLRDEVS 207

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRE---SSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
           W ++I    Q    +E AK   L +E      K + F L S++ A T       G   H 
Sbjct: 208 WNSMIVAYGQH---KEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHG 264

Query: 177 VICKYGFESDTLVGNALVSMYME-NGR--VSYGSRVFEAIAHQDSVSWNALFSRFQ-DYE 232
            + K GF  ++ VG+ L+  Y +  GR  +S   +VF+ I   D V WN + S +  + E
Sbjct: 265 KLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPDLVLWNTMISGYSMNEE 324

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VG 291
             ++ ++ F QM   G +P+ C+F+ +  ACS+LS    GKQ+H   IK ++  N + V 
Sbjct: 325 HSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQIHGLAIKSNIPSNRISVN 384

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
            +L+ +Y KSG L DA   FD +   +  ++  +I  YAQ G    AL+ +++M   GI 
Sbjct: 385 NALISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIA 444

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL-LDMFVSTALVAMYAKCGSIDDAEA 410
            N  T  + L+ C+    +  G+   +   +T  +  +    + ++ +  + G +++AE 
Sbjct: 445 PNNITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAER 504

Query: 411 VFKGSALRD-TASWNMMIGGYVKH---GLGEKALEAFRMMLDEGYVP 453
                  +  + +W  ++G   KH    L E+A +   +M      P
Sbjct: 505 FIDAMPYKPGSVAWAALLGACRKHKNMALAERAAKELMVMQPLAATP 551


>gi|225454363|ref|XP_002276073.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial [Vitis vinifera]
          Length = 673

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 184/552 (33%), Positives = 288/552 (52%), Gaps = 6/552 (1%)

Query: 55  STVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
           S  LK  A  G++  G+ +HA  I+LG      L   ++ +Y KC   ++  K+F  +  
Sbjct: 77  SHALKISAKLGFLHGGKQLHAHVIKLGNCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPL 136

Query: 115 PDVVAWGAIITCLDQQGCCQEAA-----KIFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
            +VV+W  +I C   +G C+ A        F  M    + PN   L  L+RA+ E  D  
Sbjct: 137 KNVVSWNTLI-CGVVEGNCKFALVRLGFHYFRQMVLEMMAPNCITLNGLLRASIELNDVG 195

Query: 170 CGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
               +H  I K GF+S+  VG+ALV  Y + G V      F+ ++ +D V WN + S + 
Sbjct: 196 ICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYA 255

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
                 +   +F  M L+G K +  TF  ++ +C  L   G GKQ+H   I+ S D + +
Sbjct: 256 LNGVQGKAFGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVL 315

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           V ++LVDMY K+  +EDA  AFD +  K++ ++T +I  Y Q G+ + A++  ++M    
Sbjct: 316 VASALVDMYSKNENIEDARKAFDGMIVKNIVSWTTMIVGYGQHGDGKEAMRLLQEMIRVY 375

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
              +E  LAS L+ C  ++  +    +H+  V+ G    + ++ ALV+ Y+KCGSI  A 
Sbjct: 376 TYPDELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCGSIGSAF 435

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
             F   A  D  SW  ++G Y  HGL ++ +E F  ML     PD++ F+ VLSAC+H G
Sbjct: 436 QSFSSVAEPDIISWTSLMGAYAFHGLSKEGVEVFEKMLFSNVRPDKVAFLGVLSACAHGG 495

Query: 470 LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENL 529
            + EG  +F+ +  +Y I P  +H+ C+ID+LGRAG   E  N +T   + P +      
Sbjct: 496 FVLEGLHYFNLMINVYQIMPDSEHYTCIIDLLGRAGFLDEAINLLTSMPVEPRSDTLGAF 555

Query: 530 LGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589
           LGAC  H N+ L    +EKL  +EP   +NY   S++ A+ G W D + VR L+  +   
Sbjct: 556 LGACKVHRNVGLARWASEKLFVMEPNEPANYSLMSNMYASVGHWFDVARVRKLMRERCDF 615

Query: 590 KEPSCSWIEVDG 601
           K P CSW+E+ G
Sbjct: 616 KVPGCSWMEIAG 627



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 195/409 (47%), Gaps = 7/409 (1%)

Query: 6   RVFKSMPELNVVSWNALLNGYAESGDGQKVM-----HLFCSMKDMEKKFSKFSLSTVLKG 60
           ++F  MP  NVVSWN L+ G  E G+ +  +     H F  M       +  +L+ +L+ 
Sbjct: 129 KMFDEMPLKNVVSWNTLICGVVE-GNCKFALVRLGFHYFRQMVLEMMAPNCITLNGLLRA 187

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 +   + +H   ++ G   + F+  +LVD Y+K GL D A   F  +   D+V W
Sbjct: 188 SIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLW 247

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +++C    G   +A  +F LMR   VK + F  TS++ +    G    G+ +H +I +
Sbjct: 248 NVMVSCYALNGVQGKAFGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCGLGKQVHGLIIR 307

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             F+ D LV +ALV MY +N  +    + F+ +  ++ VSW  +   +  +    + +R+
Sbjct: 308 LSFDLDVLVASALVDMYSKNENIEDARKAFDGMIVKNIVSWTTMIVGYGQHGDGKEAMRL 367

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
             +M+     P+      IL +C +LS      Q+HA+ +++  +    +  +LV  Y K
Sbjct: 368 LQEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIANALVSAYSK 427

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +  A  +F S+A  D+ ++T+++ +YA  G ++  ++ F KM    ++ ++      
Sbjct: 428 CGSIGSAFQSFSSVAEPDIISWTSLMGAYAFHGLSKEGVEVFEKMLFSNVRPDKVAFLGV 487

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLL-DMFVSTALVAMYAKCGSIDDA 408
           L+ C+    +  G    ++ +    ++ D    T ++ +  + G +D+A
Sbjct: 488 LSACAHGGFVLEGLHYFNLMINVYQIMPDSEHYTCIIDLLGRAGFLDEA 536



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 147/307 (47%), Gaps = 5/307 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+  F  +   ++V WN +++ YA +G   K   +F  M+    K   F+ ++++     
Sbjct: 232 AQSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDNFTFTSMINSCGV 291

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G    G+ VH + IRL   LD  ++ +LVDMYSK    ++A K F  +   ++V+W  +
Sbjct: 292 LGSCGLGKQVHGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMIVKNIVSWTTM 351

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q G  +EA ++   M      P++  L S++ +            +HA + + GF
Sbjct: 352 IVGYGQHGDGKEAMRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENGF 411

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E+   + NALVS Y + G +    + F ++A  D +SW +L   +  +    +G+ +F +
Sbjct: 412 EAFLSIANALVSAYSKCGSIGSAFQSFSSVAEPDIISWTSLMGAYAFHGLSKEGVEVFEK 471

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQ---LHAHTIKHSLDGNHVVGTSLVDMYDK 300
           ML    +P+   F+ +L AC+    V  G     L  +  +   D  H   T ++D+  +
Sbjct: 472 MLFSNVRPDKVAFLGVLSACAHGGFVLEGLHYFNLMINVYQIMPDSEHY--TCIIDLLGR 529

Query: 301 SGCLEDA 307
           +G L++A
Sbjct: 530 AGFLDEA 536



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 4/168 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A++ F  M   N+VSW  ++ GY + GDG++ M L   M  +     + +L+++L  
Sbjct: 330 IEDARKAFDGMIVKNIVSWTTMIVGYGQHGDGKEAMRLLQEMIRVYTYPDELALASILSS 389

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCS--LVDMYSKCGLADNALKVFYRIKDPDVV 118
             N         VHA  +  G   + FLS +  LV  YSKCG   +A + F  + +PD++
Sbjct: 390 CGNLSATSEVVQVHAYVVENG--FEAFLSIANALVSAYSKCGSIGSAFQSFSSVAEPDII 447

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
           +W +++      G  +E  ++F  M  S+V+P++     ++ A    G
Sbjct: 448 SWTSLMGAYAFHGLSKEGVEVFEKMLFSNVRPDKVAFLGVLSACAHGG 495


>gi|224063136|ref|XP_002301008.1| predicted protein [Populus trichocarpa]
 gi|222842734|gb|EEE80281.1| predicted protein [Populus trichocarpa]
          Length = 691

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 194/635 (30%), Positives = 314/635 (49%), Gaps = 41/635 (6%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSK-FSLSTVLKGFA 62
           A ++F  MP  N+V+W  +++ Y  +G  ++ + L+  M D + +    F  S VLK   
Sbjct: 57  AYKLFDEMPVKNIVTWTTMVSAYTSNGKPREAIKLYTRMLDSKSEVPNGFMYSVVLKACG 116

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI---------- 112
             G I+ G+++H    R     D  L  +L+DMY KCG   +A KVF RI          
Sbjct: 117 LVGEIELGRLIHKRFSRENLDYDIVLLNALLDMYVKCGCLSDARKVFDRIFLRANSTSWN 176

Query: 113 ----------------------KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKP 150
                                  D +VV+W  II  L + G  +    +  + RE  +K 
Sbjct: 177 TMISGYFKEGLVEEAVNLFNQMPDRNVVSWNTIIAGLAENGSSRALQFVCKMHREG-IKL 235

Query: 151 NQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF 210
           ++F     ++  +  G    G+ IH  + K G ES     +ALV MY     +    R+F
Sbjct: 236 DKFTFPCALKTCSYAGFLVAGKQIHCYVLKSGLESSCFAVSALVDMYSNCNGLDDAIRLF 295

Query: 211 EAIAHQ-----DS-VSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACS 264
           +  +       DS V WN++ S +  +E     + +  Q+   G   +  T    LK C 
Sbjct: 296 DQYSGGTGSICDSLVLWNSMLSGYVVHEKNRAAVNMIAQIHHSGASVDSYTLSSALKVCI 355

Query: 265 SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA 324
           +L +V  G Q+HA  +    + ++VVG+ LVD+Y K G ++DA   F  L  KD+ A++ 
Sbjct: 356 NLLNVRLGIQVHALIVTSGHELDYVVGSILVDLYAKLGNMKDAFKLFHRLPKKDIVAWSG 415

Query: 325 IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           ++   A+     +AL  FR M   G++ +++ +++ L  CS +A++  G+ +H+  +K G
Sbjct: 416 LLMGCAKMELNSLALSLFRDMVTFGVEVDQYIVSNVLKVCSSLASIGTGKQVHAFCIKRG 475

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
           +  +    TAL+ MY+KCG ++D   +F   A RD   W  +I G  ++G   +ALE FR
Sbjct: 476 YETEQVTITALIDMYSKCGEVEDGLVLFGCVADRDVVCWTGIIVGCAQNGRANEALEIFR 535

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA 504
            M+  G  P+E+T++ VL+AC H GL+ E +  F ++K  + + P ++H+ CM+D+L +A
Sbjct: 536 QMVQSGLKPNEVTYLGVLTACRHAGLVVEAQTIFGTMKCDHRLEPQLEHYYCMVDLLCQA 595

Query: 505 GKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564
           G F E+E  I E    P+  +W ++LGAC  H N  L    AE LL   P   S YV  S
Sbjct: 596 GYFKEVEKLIAEMPFKPDKTIWSSMLGACGTHRNTGLVSTIAENLLANCPNDPSIYVMLS 655

Query: 565 DISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +   T G W+  S VR      G+K   + SWIE+
Sbjct: 656 NAYGTLGMWDSLSQVREAAKKLGVKAAGT-SWIEI 689



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 126/442 (28%), Positives = 210/442 (47%), Gaps = 11/442 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  +F  MP+ NVVSWN ++ G AE+G   + +   C M     K  KF+    LK 
Sbjct: 188 VEEAVNLFNQMPDRNVVSWNTIIAGLAENGS-SRALQFVCKMHREGIKLDKFTFPCALKT 246

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD------ 114
            + +G++ AG+ +H   ++ G     F   +LVDMYS C   D+A+++F +         
Sbjct: 247 CSYAGFLVAGKQIHCYVLKSGLESSCFAVSALVDMYSNCNGLDDAIRLFDQYSGGTGSIC 306

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
             +V W ++++        + A  +   +  S    + + L+S ++      + R G  +
Sbjct: 307 DSLVLWNSMLSGYVVHEKNRAAVNMIAQIHHSGASVDSYTLSSALKVCINLLNVRLGIQV 366

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           HA+I   G E D +VG+ LV +Y + G +    ++F  +  +D V+W+ L       E  
Sbjct: 367 HALIVTSGHELDYVVGSILVDLYAKLGNMKDAFKLFHRLPKKDIVAWSGLLMGCAKMELN 426

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
              L +F  M+  G + +      +LK CSSL+ +G GKQ+HA  IK   +   V  T+L
Sbjct: 427 SLALSLFRDMVTFGVEVDQYIVSNVLKVCSSLASIGTGKQVHAFCIKRGYETEQVTITAL 486

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           +DMY K G +ED  V F  +A++D+  +T II   AQ G A  AL+ FR+M   G+K NE
Sbjct: 487 IDMYSKCGEVEDGLVLFGCVADRDVVCWTGIIVGCAQNGRANEALEIFRQMVQSGLKPNE 546

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS--TALVAMYAKCGSIDDAEAVF 412
            T    L  C     +   + +    +K  H L+  +     +V +  + G   + E + 
Sbjct: 547 VTYLGVLTACRHAGLVVEAQTIFG-TMKCDHRLEPQLEHYYCMVDLLCQAGYFKEVEKLI 605

Query: 413 KGSALR-DTASWNMMIGGYVKH 433
                + D   W+ M+G    H
Sbjct: 606 AEMPFKPDKTIWSSMLGACGTH 627



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 147/569 (25%), Positives = 256/569 (44%), Gaps = 76/569 (13%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +K G+  H+  I+ G + + +++C+LV MY+      +A K+F  +   ++V W  +++ 
Sbjct: 19  LKQGKSFHSHLIKTGYSHNVYIACNLVSMYADFTFLIDAYKLFDEMPVKNIVTWTTMVSA 78

Query: 127 LDQQGCCQEAAKIFNLMRES-SVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
               G  +EA K++  M +S S  PN F+ + +++A    G+   G  IH    +   + 
Sbjct: 79  YTSNGKPREAIKLYTRMLDSKSEVPNGFMYSVVLKACGLVGEIELGRLIHKRFSRENLDY 138

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAI-AHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
           D ++ NAL+ MY++ G +S   +VF+ I    +S SWN + S +      ++ + +F QM
Sbjct: 139 DIVLLNALLDMYVKCGCLSDARKVFDRIFLRANSTSWNTMISGYFKEGLVEEAVNLFNQM 198

Query: 245 ----------LLKGFKPN--------MC------------TFIVILKACSSLSDVGFGKQ 274
                     ++ G   N        +C            TF   LK CS    +  GKQ
Sbjct: 199 PDRNVVSWNTIIAGLAENGSSRALQFVCKMHREGIKLDKFTFPCALKTCSYAGFLVAGKQ 258

Query: 275 LHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN------KDLFAYTAIITS 328
           +H + +K  L+ +    ++LVDMY     L+DA   FD  +         L  + ++++ 
Sbjct: 259 IHCYVLKSGLESSCFAVSALVDMYSNCNGLDDAIRLFDQYSGGTGSICDSLVLWNSMLSG 318

Query: 329 YAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLD 388
           Y    +   A+    ++   G   + +TL+S L  C  +  +  G  +H++ V +GH LD
Sbjct: 319 YVVHEKNRAAVNMIAQIHHSGASVDSYTLSSALKVCINLLNVRLGIQVHALIVTSGHELD 378

Query: 389 MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
             V + LV +YAK G++ DA  +F     +D  +W+ ++ G  K  L   AL  FR M+ 
Sbjct: 379 YVVGSILVDLYAKLGNMKDAFKLFHRLPKKDIVAWSGLLMGCAKMELNSLALSLFRDMVT 438

Query: 449 EGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIY-----GITPTIKH--------- 493
            G   D+     VL  CS +  I  GK+ H   IK+ Y      IT  I           
Sbjct: 439 FGVEVDQYIVSNVLKVCSSLASIGTGKQVHAFCIKRGYETEQVTITALIDMYSKCGEVED 498

Query: 494 ----FACMID--------IL------GRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
               F C+ D        I+      GRA +  EI   + ++ L PN + +  +L AC  
Sbjct: 499 GLVLFGCVADRDVVCWTGIIVGCAQNGRANEALEIFRQMVQSGLKPNEVTYLGVLTACR- 557

Query: 536 HGNIELDEKDAEKLLE----LEPKMESNY 560
           H  + ++ +     ++    LEP++E  Y
Sbjct: 558 HAGLVVEAQTIFGTMKCDHRLEPQLEHYY 586



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 110/253 (43%), Gaps = 32/253 (12%)

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
            +  ++ C  +  +  GK  H+H IK     N  +  +LV MY     L DA   FD + 
Sbjct: 6   IVAAIRHCGRVKALKQGKSFHSHLIKTGYSHNVYIACNLVSMYADFTFLIDAYKLFDEMP 65

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFTLASCLNGCSPVATLANGR 374
            K++  +T ++++Y   G+   A+K + +M   +    N F  +  L  C  V  +  GR
Sbjct: 66  VKNIVTWTTMVSAYTSNGKPREAIKLYTRMLDSKSEVPNGFMYSVVLKACGLVGEIELGR 125

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DTASWNMMIGGYVKH 433
           L+H    +     D+ +  AL+ MY KCG + DA  VF    LR ++ SWN MI GY K 
Sbjct: 126 LIHKRFSRENLDYDIVLLNALLDMYVKCGCLSDARKVFDRIFLRANSTSWNTMISGYFKE 185

Query: 434 GLGEKALEAFRMMLD------------------------------EGYVPDEITFVVVLS 463
           GL E+A+  F  M D                              EG   D+ TF   L 
Sbjct: 186 GLVEEAVNLFNQMPDRNVVSWNTIIAGLAENGSSRALQFVCKMHREGIKLDKFTFPCALK 245

Query: 464 ACSHMGLIEEGKK 476
            CS+ G +  GK+
Sbjct: 246 TCSYAGFLVAGKQ 258



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 87/188 (46%), Gaps = 8/188 (4%)

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
           + + +  C  V  L  G+  HS  +KTG+  +++++  LV+MYA    + DA  +F    
Sbjct: 6   IVAAIRHCGRVKALKQGKSFHSHLIKTGYSHNVYIACNLVSMYADFTFLIDAYKLFDEMP 65

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLD-EGYVPDEITFVVVLSACSHMGLIEEGK 475
           +++  +W  M+  Y  +G   +A++ +  MLD +  VP+   + VVL AC  +G IE G+
Sbjct: 66  VKNIVTWTTMVSAYTSNGKPREAIKLYTRMLDSKSEVPNGFMYSVVLKACGLVGEIELGR 125

Query: 476 ---KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
              K FS     Y I         ++D+  + G  ++         L  N+  W  ++  
Sbjct: 126 LIHKRFSRENLDYDIVL----LNALLDMYVKCGCLSDARKVFDRIFLRANSTSWNTMISG 181

Query: 533 CSWHGNIE 540
               G +E
Sbjct: 182 YFKEGLVE 189


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 197/660 (29%), Positives = 324/660 (49%), Gaps = 105/660 (15%)

Query: 6   RVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSG 65
           ++ K    L V   N L+  YA++G  +   H+F    +M  K S FS +T++ G+A  G
Sbjct: 35  QIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVF---DEMPLK-STFSWNTLISGYAKQG 90

Query: 66  YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT 125
             +  +                                   ++ Y + D D V+W AII 
Sbjct: 91  NFEVSR-----------------------------------RLLYEMPDCDPVSWTAIIV 115

Query: 126 CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
             +Q G    A  +F  M    V P+QF +++++ +         G  IH+ + K G  S
Sbjct: 116 GYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGS 175

Query: 186 ----------------DTLVG---------------NALVSMYMENGRVSYGSRVFEAIA 214
                           D ++                NAL+S+YM++G+    +  FE + 
Sbjct: 176 CVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMP 235

Query: 215 HQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK-GFKPNMCTFIVILKACSSLSDVGFGK 273
            +D VSWN++ S +       + L IF +ML +   KP+  T   IL AC++L  +  GK
Sbjct: 236 DRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGK 295

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV------------------------ 309
           Q+HA+ ++   + +  VG +L+ MY KSG +E A +                        
Sbjct: 296 QIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTK 355

Query: 310 ---------AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
                     F+ L ++D+ A+TA+I  Y Q G    AL+ FR M  EG + N +TLA+ 
Sbjct: 356 LGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAM 415

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK-GSALRD 419
           L+  S +  L +G+ +H+ A+K G      V+ AL+AMYAK G+I+ A+ VF   +  ++
Sbjct: 416 LSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKE 475

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SW  MI    +HGLG++A+  F  ML  G  PD IT+V VLSAC+H+GL+E+G+K+++
Sbjct: 476 IVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYN 535

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
            + +++ I PT+ H+ACMID+ GRAG   E   FI    + P+ + W +LL +C  H N 
Sbjct: 536 MMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNA 595

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +L +  AE+LL ++P     Y+  +++ +  G+W + +  R L+  +G++KE   SWI +
Sbjct: 596 DLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHI 655



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 116/477 (24%), Positives = 199/477 (41%), Gaps = 99/477 (20%)

Query: 158 LVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQD 217
           +++ +    D   G S+H  I K G      + N L++ Y + G + +   VF+ +  + 
Sbjct: 16  ILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKS 75

Query: 218 SVSWNALFSRFQD-----------YESPD--------------------QGLRIFYQMLL 246
           + SWN L S +             YE PD                      + +F +M+ 
Sbjct: 76  TFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMIS 135

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           +   P+  T   +L +C++   +  G+++H+  +K  L     V TSL++MY K G    
Sbjct: 136 ERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVI 195

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM--------------------R 346
           A V FD +  K++  + A+I+ Y Q+G+ E+A   F KM                     
Sbjct: 196 AKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYN 255

Query: 347 LEG------------IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA 394
           LE             +K + FTLAS L+ C+ +  L  G+ +H+  ++        V  A
Sbjct: 256 LEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNA 315

Query: 395 LVAMYAKCGSID---------------------------------DAEAVFKGSALRDTA 421
           L++MYAK G ++                                  A  +F     RD  
Sbjct: 316 LISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVV 375

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSS 480
           +W  MI GYV++GL   ALE FR+M++EG  P+  T   +LS  S + ++E GK+ H S+
Sbjct: 376 AWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASA 435

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           IK     TP++ +   +I +  + G     +            + W +++ A + HG
Sbjct: 436 IKAGESSTPSVTN--ALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHG 490



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 107/407 (26%), Positives = 168/407 (41%), Gaps = 80/407 (19%)

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
           F  IL+    + D   G+ +H   IK  L     +  +L+  Y K+G L  A   FD + 
Sbjct: 13  FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMP 72

Query: 316 NKDLFAYTAIITSYAQAGEAEM-------------------------------ALKCFRK 344
            K  F++  +I+ YA+ G  E+                               A+  F K
Sbjct: 73  LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAK 132

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404
           M  E +  ++FT+++ L+ C+   TL  GR +HS  VK G    + V+T+L+ MYAKCG 
Sbjct: 133 MISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGD 192

Query: 405 IDDAEAVFKGSAL-------------------------------RDTASWNMMIGGYVKH 433
              A+ VF    +                               RD  SWN MI GY + 
Sbjct: 193 PVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQ 252

Query: 434 GLGEKALEAFRMMLDEGYV-PDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK 492
           G   +AL  F  ML+E  + PD  T   +LSAC+++  +  GK+  + I +    T    
Sbjct: 253 GYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAV 312

Query: 493 HFACMIDILGRAGKFTEIENFITETKLTP--NALVWENLLGACSWHGNIELDEKDAEKLL 550
             A +I +  ++G   EI   I E   T   N + + +LL   +  GN++   +   KL 
Sbjct: 313 GNA-LISMYAKSGG-VEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLR 370

Query: 551 ELE----PKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPS 593
           + +      M   YV         G WND   +  L+ ++G   EP+
Sbjct: 371 DRDVVAWTAMIVGYV-------QNGLWNDALELFRLMVNEG--PEPN 408


>gi|449522418|ref|XP_004168223.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Cucumis sativus]
          Length = 743

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 181/601 (30%), Positives = 309/601 (51%), Gaps = 3/601 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + L ++VF +M + NVV W  ++  Y+  GD      +F  M++   + +  +L ++L G
Sbjct: 100 IHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLLPG 159

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    +     +H + I  G   D  LS S+V+MY KCG   +A ++F  I   D+V+W
Sbjct: 160 ISK---LPLLLCLHCLIILHGFESDLALSNSMVNMYGKCGRIADARRLFESIGCRDIVSW 216

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++++   + G  +E  ++   M+   +KP++    S + A+   GD R G+ +H ++ K
Sbjct: 217 NSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQTFCSALSASAIKGDLRLGKLVHGLMLK 276

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G   D  V +ALV +Y+    +    +VF++   +D V W A+ S     +  D+ L +
Sbjct: 277 DGLNIDQHVESALVVLYLRCRCLDPAYKVFKSTTEKDVVMWTAMISGLVQNDCADKALGV 336

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           FYQM+    KP+  T    L AC+ L     G  +H + ++  +  +     SLV MY K
Sbjct: 337 FYQMIESNVKPSTATLASGLAACAQLGCCDIGASIHGYVLRQGIMLDIPAQNSLVTMYAK 396

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
              L+ +   F+ +  KDL ++ AI+  +A+ G     +  F +MR   ++ +  T+ S 
Sbjct: 397 CNKLQQSCSIFNKMVEKDLVSWNAIVAGHAKNGYLSKGIFFFNEMRKSFLRPDSITVTSL 456

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L  C     L  G+ +H+  +++  +  +   TALV MY KCG++++A+  F     RD 
Sbjct: 457 LQACGSAGALCQGKWIHNFVLRSSLIPCIMTETALVDMYFKCGNLENAQKCFDCMLQRDL 516

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            +W+ +I GY  +G GE AL  +   L  G  P+ + F+ VLSACSH GLI +G   + S
Sbjct: 517 VAWSTLIVGYGFNGKGEIALRKYSEFLGTGMEPNHVIFISVLSACSHGGLISKGLSIYES 576

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + K + ++P ++H AC++D+L RAGK  E  +F       P+ +V   LL AC  +G +E
Sbjct: 577 MTKDFRMSPNLEHRACVVDLLSRAGKVDEAYSFYKMMFKEPSIVVLGMLLDACRVNGRVE 636

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           L +  A  + EL+P    N+V  ++  A+  RW+        + S G+KK P  S IEV 
Sbjct: 637 LGKVIARDMFELKPVDPGNFVQLANSYASMSRWDGVEKAWTQMRSLGLKKYPGWSSIEVH 696

Query: 601 G 601
           G
Sbjct: 697 G 697



 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 153/552 (27%), Positives = 267/552 (48%), Gaps = 8/552 (1%)

Query: 18  SWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMA 77
           S+N+L++  +  G   +V+  + SM+    +   ++  ++ K   N      G  +H   
Sbjct: 16  SFNSLVSRLSYQGAHHQVLQTYISMQKTHTQLDAYTFPSLFKACTNLNLFSHGLSLHQSV 75

Query: 78  IRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAA 137
           +  G + D ++  SL+  Y+K G      KVF  +   +VV W  II    ++G    A 
Sbjct: 76  VVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAF 135

Query: 138 KIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMY 197
            +F  MRES ++P    L SL+   ++         +H +I  +GFESD  + N++V+MY
Sbjct: 136 SMFKQMRESGIQPTSVTLLSLLPGISKLPLL---LCLHCLIILHGFESDLALSNSMVNMY 192

Query: 198 MENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFI 257
            + GR++   R+FE+I  +D VSWN+L S +    + ++ L++   M ++  KP+  TF 
Sbjct: 193 GKCGRIADARRLFESIGCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQTFC 252

Query: 258 VILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK 317
             L A +   D+  GK +H   +K  L+ +  V ++LV +Y +  CL+ A   F S   K
Sbjct: 253 SALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVFKSTTEK 312

Query: 318 DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLH 377
           D+  +TA+I+   Q   A+ AL  F +M    +K +  TLAS L  C+ +     G  +H
Sbjct: 313 DVVMWTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLGCCDIGASIH 372

Query: 378 SIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGE 437
              ++ G +LD+    +LV MYAKC  +  + ++F     +D  SWN ++ G+ K+G   
Sbjct: 373 GYVLRQGIMLDIPAQNSLVTMYAKCNKLQQSCSIFNKMVEKDLVSWNAIVAGHAKNGYLS 432

Query: 438 KALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACM 497
           K +  F  M      PD IT   +L AC   G + +GK   + + +   + P I     +
Sbjct: 433 KGIFFFNEMRKSFLRPDSITVTSLLQACGSAGALCQGKWIHNFVLR-SSLIPCIMTETAL 491

Query: 498 IDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKME 557
           +D+  + G     +    +  L  + + W  L+    ++G  E+  +   +   L   ME
Sbjct: 492 VDMYFKCGNLENAQKCF-DCMLQRDLVAWSTLIVGYGFNGKGEIALRKYSEF--LGTGME 548

Query: 558 SNYV-FPSDISA 568
            N+V F S +SA
Sbjct: 549 PNHVIFISVLSA 560



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/267 (32%), Positives = 139/267 (52%), Gaps = 3/267 (1%)

Query: 209 VFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSD 268
           + E+IAH  + S+N+L SR     +  Q L+ +  M     + +  TF  + KAC++L+ 
Sbjct: 5   IHESIAHGCTKSFNSLVSRLSYQGAHHQVLQTYISMQKTHTQLDAYTFPSLFKACTNLNL 64

Query: 269 VGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITS 328
              G  LH   + + L  +  +G+SL+  Y K GC+      FD++  +++  +T II S
Sbjct: 65  FSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGS 124

Query: 329 YAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLD 388
           Y++ G+ ++A   F++MR  GI+    TL S L G   ++ L     LH + +  G   D
Sbjct: 125 YSREGDIDIAFSMFKQMRESGIQPTSVTLLSLLPG---ISKLPLLLCLHCLIILHGFESD 181

Query: 389 MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
           + +S ++V MY KCG I DA  +F+    RD  SWN ++  Y K G  E+ L+  + M  
Sbjct: 182 LALSNSMVNMYGKCGRIADARRLFESIGCRDIVSWNSLLSAYSKIGATEEILQLLQAMKI 241

Query: 449 EGYVPDEITFVVVLSACSHMGLIEEGK 475
           E   PD+ TF   LSA +  G +  GK
Sbjct: 242 EDIKPDKQTFCSALSASAIKGDLRLGK 268



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 117/265 (44%), Gaps = 10/265 (3%)

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           +G+  +S+A+    ++ ++++  +  G     L+ +  M+    + + +T  S    C+ 
Sbjct: 2   SGLIHESIAHGCTKSFNSLVSRLSYQGAHHQVLQTYISMQKTHTQLDAYTFPSLFKACTN 61

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           +   ++G  LH   V  G   D ++ ++L++ YAK G I     VF     R+   W  +
Sbjct: 62  LNLFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTI 121

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           IG Y + G  + A   F+ M + G  P  +T + +L   S +            +  ++G
Sbjct: 122 IGSYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLLPGISKL----PLLLCLHCLIILHG 177

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE--LDEK 544
               +     M+++ G+ G+  +      E+    + + W +LL A S  G  E  L   
Sbjct: 178 FESDLALSNSMVNMYGKCGRIADARRLF-ESIGCRDIVSWNSLLSAYSKIGATEEILQLL 236

Query: 545 DAEKLLELEPKMESNYVFPSDISAT 569
            A K+ +++P  ++   F S +SA+
Sbjct: 237 QAMKIEDIKPDKQT---FCSALSAS 258


>gi|15239085|ref|NP_201360.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180382|sp|Q9LSL8.1|PP446_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65570
 gi|8978285|dbj|BAA98176.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010689|gb|AED98072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 170/510 (33%), Positives = 281/510 (55%), Gaps = 3/510 (0%)

Query: 92  LVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPN 151
           LVD   KCG  D A +VF  + +  +V W ++I  L +    +EA +++ LM  ++V P+
Sbjct: 105 LVDASLKCGDIDYARQVFDGMSERHIVTWNSLIAYLIKHRRSKEAVEMYRLMITNNVLPD 164

Query: 152 QFVLTSLVRATTETGDQRCGESIHAVICKYGFE-SDTLVGNALVSMYMENGRVSYGSRVF 210
           ++ L+S+ +A ++   ++  +  H +    G E S+  VG+ALV MY++ G+      V 
Sbjct: 165 EYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVL 224

Query: 211 EAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVG 270
           + +  +D V   AL   +       + ++ F  ML++  +PN  T+  +L +C +L D+G
Sbjct: 225 DRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIG 284

Query: 271 FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
            GK +H   +K   +      TSL+ MY +   ++D+   F  +   +  ++T++I+   
Sbjct: 285 NGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTSLISGLV 344

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
           Q G  EMAL  FRKM  + IK N FTL+S L GCS +A    GR +H I  K G   D +
Sbjct: 345 QNGREEMALIEFRKMMRDSIKPNSFTLSSALRGCSNLAMFEEGRQIHGIVTKYGFDRDKY 404

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
             + L+ +Y KCG  D A  VF   +  D  S N MI  Y ++G G +AL+ F  M++ G
Sbjct: 405 AGSGLIDLYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALDLFERMINLG 464

Query: 451 YVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEI 510
             P+++T + VL AC++  L+EEG + F S +K   I  T  H+ACM+D+LGRAG+  E 
Sbjct: 465 LQPNDVTVLSVLLACNNSRLVEEGCELFDSFRK-DKIMLTNDHYACMVDLLGRAGRLEEA 523

Query: 511 ENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQ 570
           E   TE  + P+ ++W  LL AC  H  +E+ E+   K+LE+EP  E   +  S++ A+ 
Sbjct: 524 EMLTTEV-INPDLVLWRTLLSACKVHRKVEMAERITRKILEIEPGDEGTLILMSNLYAST 582

Query: 571 GRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           G+WN    +++ +    +KK P+ SW+E++
Sbjct: 583 GKWNRVIEMKSKMKDMKLKKNPAMSWVEIN 612



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 129/449 (28%), Positives = 216/449 (48%), Gaps = 1/449 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A++VF  M E ++V+WN+L+    +    ++ + ++  M        +++LS+V K 
Sbjct: 115 IDYARQVFDGMSERHIVTWNSLIAYLIKHRRSKEAVEMYRLMITNNVLPDEYTLSSVFKA 174

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDK-FLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           F++    K  Q  H +A+ LG  +   F+  +LVDMY K G    A  V  R+++ DVV 
Sbjct: 175 FSDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVL 234

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
             A+I    Q+G   EA K F  M    V+PN++   S++ +     D   G+ IH ++ 
Sbjct: 235 ITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMV 294

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K GFES      +L++MY+    V    RVF+ I + + VSW +L S        +  L 
Sbjct: 295 KSGFESALASQTSLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTSLISGLVQNGREEMALI 354

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
            F +M+    KPN  T    L+ CS+L+    G+Q+H    K+  D +   G+ L+D+Y 
Sbjct: 355 EFRKMMRDSIKPNSFTLSSALRGCSNLAMFEEGRQIHGIVTKYGFDRDKYAGSGLIDLYG 414

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K GC + A + FD+L+  D+ +   +I SYAQ G    AL  F +M   G++ N+ T+ S
Sbjct: 415 KCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALDLFERMINLGLQPNDVTVLS 474

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L  C+    +  G  L     K   +L       +V +  + G +++AE +       D
Sbjct: 475 VLLACNNSRLVEEGCELFDSFRKDKIMLTNDHYACMVDLLGRAGRLEEAEMLTTEVINPD 534

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLD 448
              W  ++     H   E A    R +L+
Sbjct: 535 LVLWRTLLSACKVHRKVEMAERITRKILE 563



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 103/335 (30%), Positives = 178/335 (53%), Gaps = 3/335 (0%)

Query: 172 ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY 231
           ++I A + K GF ++ + G+ LV   ++ G + Y  +VF+ ++ +  V+WN+L +    +
Sbjct: 85  KTIQAHMLKSGFPAE-ISGSKLVDASLKCGDIDYARQVFDGMSERHIVTWNSLIAYLIKH 143

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-V 290
               + + ++  M+     P+  T   + KA S LS     ++ H   +   L+ ++V V
Sbjct: 144 RRSKEAVEMYRLMITNNVLPDEYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVFV 203

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
           G++LVDMY K G   +A +  D +  KD+   TA+I  Y+Q GE   A+K F+ M +E +
Sbjct: 204 GSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKV 263

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
           + NE+T AS L  C  +  + NG+L+H + VK+G    +   T+L+ MY +C  +DD+  
Sbjct: 264 QPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLR 323

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           VFK     +  SW  +I G V++G  E AL  FR M+ +   P+  T    L  CS++ +
Sbjct: 324 VFKCIEYPNQVSWTSLISGLVQNGREEMALIEFRKMMRDSIKPNSFTLSSALRGCSNLAM 383

Query: 471 IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAG 505
            EEG++    + K YG        + +ID+ G+ G
Sbjct: 384 FEEGRQIHGIVTK-YGFDRDKYAGSGLIDLYGKCG 417



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 108/222 (48%), Gaps = 2/222 (0%)

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
            F  +L+ C     +   K + AH +K       + G+ LVD   K G ++ A   FD +
Sbjct: 67  NFSQLLRQCIDERSISGIKTIQAHMLKSGFPA-EISGSKLVDASLKCGDIDYARQVFDGM 125

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
           + + +  + ++I    +   ++ A++ +R M    +  +E+TL+S     S ++     +
Sbjct: 126 SERHIVTWNSLIAYLIKHRRSKEAVEMYRLMITNNVLPDEYTLSSVFKAFSDLSLEKEAQ 185

Query: 375 LLHSIAVKTG-HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKH 433
             H +AV  G  + ++FV +ALV MY K G   +A+ V      +D      +I GY + 
Sbjct: 186 RSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQK 245

Query: 434 GLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           G   +A++AF+ ML E   P+E T+  VL +C ++  I  GK
Sbjct: 246 GEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGNGK 287


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 167/529 (31%), Positives = 278/529 (52%), Gaps = 1/529 (0%)

Query: 74  HAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCC 133
           H + +RLG   D +L   L+           A  VF +   P++  +  +I  +      
Sbjct: 23  HCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIRGMVSNDAF 82

Query: 134 QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ-RCGESIHAVICKYGFESDTLVGNA 192
           ++A  ++  MR+    P+ F    +++A T        G S+H+++ K GF+ D  V   
Sbjct: 83  RDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTG 142

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           LV +Y +NG ++   +VF+ I  ++ VSW A+   + +     + L +F  +L  G +P+
Sbjct: 143 LVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPD 202

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
             T + IL ACS + D+  G+ +  +  +    GN  V TSLVDMY K G +E+A   FD
Sbjct: 203 SFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFD 262

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
            +  KD+  ++A+I  YA  G  + AL  F +M+ E ++ + + +    + CS +  L  
Sbjct: 263 GMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALEL 322

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
           G     +      L +  + TAL+  YAKCGS+  A+ VFKG   +D   +N +I G   
Sbjct: 323 GNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAM 382

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK 492
            G    A   F  M+  G  PD  TFV +L  C+H GL+++G ++FS +  ++ +TPTI+
Sbjct: 383 CGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIE 442

Query: 493 HFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLEL 552
           H+ CM+D+  RAG   E ++ I    +  N++VW  LLG C  H + +L E   ++L+EL
Sbjct: 443 HYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIEL 502

Query: 553 EPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           EP    +YV  S+I +   RW++   +R+ L+ +G++K P CSW+EVDG
Sbjct: 503 EPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDG 551



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 115/456 (25%), Positives = 200/456 (43%), Gaps = 15/456 (3%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           + A  VF   P  N+  +N L+ G   +   +  + ++ SM+        F+   VLK  
Sbjct: 52  QYATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKAC 111

Query: 62  AN-SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                Y   G  +H++ I+ G   D F+   LV +YSK G   +A KVF  I + +VV+W
Sbjct: 112 TRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSW 171

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            AII    + GC  EA  +F  + E  ++P+ F L  ++ A +  GD   G  I   + +
Sbjct: 172 TAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRE 231

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G   +  V  +LV MY + G +    RVF+ +  +D V W+AL   +     P + L +
Sbjct: 232 SGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDV 291

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F++M  +  +P+    + +  ACS L  +  G              N V+GT+L+D Y K
Sbjct: 292 FFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAK 351

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +  A   F  +  KD   + A+I+  A  G    A   F +M   G++ +  T    
Sbjct: 352 CGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGL 411

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMY-------AKCGSIDDAEAVFK 413
           L GC+    + +G    S       +  +F  T  +  Y       A+ G + +A+ + +
Sbjct: 412 LCGCTHAGLVDDGHRYFS------GMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIR 465

Query: 414 GSALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
              +  ++  W  ++GG   H   + A    + +++
Sbjct: 466 SMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIE 501



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 79/166 (47%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A+RVF  M E +VV W+AL+ GYA +G  ++ + +F  M+    +   +++  V   
Sbjct: 254 MEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSA 313

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +  G ++ G     +        +  L  +L+D Y+KCG    A +VF  ++  D V +
Sbjct: 314 CSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVF 373

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
            A+I+ L   G    A  +F  M +  ++P+      L+   T  G
Sbjct: 374 NAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAG 419



 Score = 38.5 bits (88), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 23/100 (23%), Positives = 42/100 (42%)

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
           +L   +  H + ++ G   D ++   L+       +   A  VF  +   +   +N +I 
Sbjct: 15  SLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIR 74

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
           G V +     A+  +  M   G+ PD  TF  VL AC+ +
Sbjct: 75  GMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRL 114


>gi|115465559|ref|NP_001056379.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|52353535|gb|AAU44101.1| unknown protein [Oryza sativa Japonica Group]
 gi|113579930|dbj|BAF18293.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|215737011|dbj|BAG95940.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 687

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 178/535 (33%), Positives = 284/535 (53%), Gaps = 4/535 (0%)

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
           G +  G+ VHA  +R     D     +L+ +Y KCG    A +VF  +   + V+   ++
Sbjct: 30  GELSLGKAVHARVVR-AARFDVVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLM 88

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
           +     G  ++A     L+R +    N++VL+S V AT        G   H    K G  
Sbjct: 89  SGYASSGRHRDA---LALLRVADFGLNEYVLSSAVAATAHVRSYDMGRQCHGYAIKAGLA 145

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
               V +A++ MY +   +    +VF+ ++  +  ++N++ + F D    D    I   M
Sbjct: 146 EHPYVCSAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFNSMINGFLDRGQMDGSTSIVRSM 205

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
           +    + +  +++ +L  C+S  +V  G Q+H   +K  L+ N  VG++LVDMY K    
Sbjct: 206 VRNVGQWDHVSYVAVLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFP 265

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
            +A   F+ L  K++ ++TAI+T+Y Q    E AL+ F  M +EG++ NEFT A  LN C
Sbjct: 266 HEANRVFEVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSC 325

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
           + +ATL NG  L +  +KTGH   + V  AL+ MY+K GS++DA  VF     RD  SWN
Sbjct: 326 AGLATLKNGNALGACTMKTGHWGLLPVCNALMNMYSKSGSVEDARRVFLSMPCRDVVSWN 385

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
            +I GY  HG   +A+EAF  ML    VP  +TF+ VLSAC+ +GL++EG  + + + K 
Sbjct: 386 SIIIGYAHHGRAREAMEAFHDMLFAEEVPSYVTFIGVLSACAQLGLVDEGFYYLNIMMKE 445

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEK 544
            G+ P  +H+ CM+ +L R G+  E E FI    +  + + W +LL +C  + N  L  +
Sbjct: 446 VGVKPGKEHYTCMVGLLCRVGRLDEAERFIESNCIGTDVVAWRSLLSSCQVYRNYGLGHR 505

Query: 545 DAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            AE++ +L+PK    YV  S++ A   RW+    VR L+   G++KEP  SWI+V
Sbjct: 506 VAEQIFQLKPKDVGTYVLLSNMYAKANRWDGVVKVRRLMRELGVRKEPGVSWIQV 560



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 121/450 (26%), Positives = 216/450 (48%), Gaps = 20/450 (4%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           LA++VF +MP  N VS N L++GYA SG  +  + L   ++  +   +++ LS+ +   A
Sbjct: 68  LARQVFDAMPSRNPVSGNLLMSGYASSGRHRDALAL---LRVADFGLNEYVLSSAVAATA 124

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           +      G+  H  AI+ G A   ++  +++ MY +C   D A+KVF  +   +V A+ +
Sbjct: 125 HVRSYDMGRQCHGYAIKAGLAEHPYVCSAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFNS 184

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I     +G    +  I   M  +  + +     +++     T +   G  +H    K  
Sbjct: 185 MINGFLDRGQMDGSTSIVRSMVRNVGQWDHVSYVAVLGHCASTKEVVLGSQVHTQALKRR 244

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            E +  VG+ALV MY +       +RVFE +  ++ VSW A+ + +   E  +  L++F 
Sbjct: 245 LELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQNELFEDALQLFL 304

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            M ++G +PN  T+ V L +C+ L+ +  G  L A T+K    G   V  +L++MY KSG
Sbjct: 305 DMEMEGVRPNEFTYAVALNSCAGLATLKNGNALGACTMKTGHWGLLPVCNALMNMYSKSG 364

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            +EDA   F S+  +D+ ++ +II  YA  G A  A++ F  M       +  T    L+
Sbjct: 365 SVEDARRVFLSMPCRDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAEEVPSYVTFIGVLS 424

Query: 363 GCSPVATLANG-----RLLHSIAVKTG--HLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
            C+ +  +  G      ++  + VK G  H       T +V +  + G +D+AE   + +
Sbjct: 425 ACAQLGLVDEGFYYLNIMMKEVGVKPGKEHY------TCMVGLLCRVGRLDEAERFIESN 478

Query: 416 AL-RDTASWNMMIGG---YVKHGLGEKALE 441
            +  D  +W  ++     Y  +GLG +  E
Sbjct: 479 CIGTDVVAWRSLLSSCQVYRNYGLGHRVAE 508



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 136/273 (49%), Gaps = 2/273 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A +VF ++   NV ++N+++NG+ + G       +  SM     ++   S   VL  
Sbjct: 164 MDEAVKVFDNVSSFNVFAFNSMINGFLDRGQMDGSTSIVRSMVRNVGQWDHVSYVAVLGH 223

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A++  +  G  VH  A++    L+ ++  +LVDMY KC     A +VF  + + ++V+W
Sbjct: 224 CASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSW 283

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            AI+T   Q    ++A ++F  M    V+PN+F     + +       + G ++ A   K
Sbjct: 284 TAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNGNALGACTMK 343

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G      V NAL++MY ++G V    RVF ++  +D VSWN++   +  +    + +  
Sbjct: 344 TGHWGLLPVCNALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSIIIGYAHHGRAREAMEA 403

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLS--DVGF 271
           F+ ML     P+  TFI +L AC+ L   D GF
Sbjct: 404 FHDMLFAEEVPSYVTFIGVLSACAQLGLVDEGF 436


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 182/576 (31%), Positives = 300/576 (52%), Gaps = 40/576 (6%)

Query: 63  NSGYIKAGQVVHAMAIRLGC-----ALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
           N   +++ +++HA  I+ G      AL K L   ++  +   GL   A+ VF  I++P++
Sbjct: 42  NCKTLQSLRLIHAQMIKTGLHNTNYALSKLLELCVISPHFD-GLP-YAISVFETIQEPNL 99

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           + W  +            A K++  M    + PN +    L+++  ++   + G+ IH  
Sbjct: 100 LIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGH 159

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVS-----------------------YGSR------ 208
           + K G++ D  V  +L+S+Y++NGR+                        Y SR      
Sbjct: 160 VLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESA 219

Query: 209 --VFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266
             +F+ I  +D VSWNA+ S + +  +  + L +F +M+    +P+  T + ++ AC+  
Sbjct: 220 QKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQS 279

Query: 267 SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
             +  G+Q+H+    H    N  +  SL+D+Y K G LE A   F+ L  KD+ ++  +I
Sbjct: 280 GSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLI 339

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL 386
             Y      + AL  F++M   G + N+ T+ S L  C+ +  +  GR +H    K    
Sbjct: 340 GGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKS 399

Query: 387 LDMFVS--TALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
                S  T+L+ MYAKCG I+ A  VF     +  +SWN MI G+  HG  + A + F 
Sbjct: 400 ATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFS 459

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA 504
            M   G  PD+ITFV +LSACS  G+++ G+  F ++ + Y ITP ++H+ CMID+LG +
Sbjct: 460 RMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHS 519

Query: 505 GKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564
           G F E E  I   ++ P+ ++W +LL AC   GN+EL E  A+ L+++EP+    YV  S
Sbjct: 520 GLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVLLS 579

Query: 565 DISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           +I AT GRWN+ + +RALL+ +G+KK P CS IE+D
Sbjct: 580 NIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEID 615



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 142/543 (26%), Positives = 247/543 (45%), Gaps = 68/543 (12%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A  VF+++ E N++ WN +  G+A S D    + L+  M  +    + ++   +LK 
Sbjct: 84  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKS 143

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYR--------- 111
            A S   K GQ +H   ++LG  LD F+  SL+ +Y + G  ++A KVF R         
Sbjct: 144 CAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSY 203

Query: 112 ----------------------IKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK 149
                                 I   DVV+W A+I+   + G  +EA ++F  M +++++
Sbjct: 204 TALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIR 263

Query: 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRV 209
           P++  + ++V A  ++G    G  +H+ I  +GF S+  + N+L+ +Y + G +     +
Sbjct: 264 PDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGL 323

Query: 210 FEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDV 269
           FE + ++D +SWN L   +       + L +F +ML  G +PN  T + IL AC+ L  +
Sbjct: 324 FEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAI 383

Query: 270 GFGKQLHAHTIKH--SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIIT 327
             G+ +H +  K   S      + TSL+DMY K G +E A   F+S+ +K L ++ A+I 
Sbjct: 384 DIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIF 443

Query: 328 SYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL 387
            +A  G A+ A   F +MR  GI+ ++ T    L+ CS    L  GR +     +     
Sbjct: 444 GFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQ----- 498

Query: 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML 447
           D  ++  L                           +  MI      GL ++A E    M 
Sbjct: 499 DYKITPKL-------------------------EHYGCMIDLLGHSGLFKEAEEMINNME 533

Query: 448 DEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKF 507
            E   PD + +  +L AC   G +E G+    ++ KI    P    +  + +I   AG++
Sbjct: 534 ME---PDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGC--YVLLSNIYATAGRW 588

Query: 508 TEI 510
            E+
Sbjct: 589 NEV 591


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 183/601 (30%), Positives = 307/601 (51%), Gaps = 11/601 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMK---DMEKKFSKFSLS-TVLK 59
           A+ +F S+   +V  +N L+ G++ +      + +F  ++   D++   S ++ + +   
Sbjct: 71  ARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAAS 130

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           GF +    +AG V+H  AI  GC  +  L  ++V MY K    ++A KVF R+ + D + 
Sbjct: 131 GFRDD---RAGCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTIL 187

Query: 120 WGAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           W  +I+   +     E+ ++F +L+ ES  + +   L  ++ A  E  + R G  IH++ 
Sbjct: 188 WNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLA 247

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K G  S   V    +S+Y + G++   S +F      D V++NA+   +      +  L
Sbjct: 248 TKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSL 307

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            +F +++L G K    T + ++     L  +     +H +++K +   +  V T+L  +Y
Sbjct: 308 SLFKELMLSGAKLKSSTLVSLVPVSGHLMLI---YAIHGYSLKSNFLSHTSVSTALTTVY 364

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K   +E A   FD    K L ++ A+I+ Y Q G  E A+  FR+M+      N  T+ 
Sbjct: 365 SKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTIT 424

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
             L+ C+ +  L+ G+ +H +   T     ++VSTAL+ MYAKCGSI +A  +F     +
Sbjct: 425 CILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKK 484

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           +  +WN MI GY  HG G++AL  F  ML+ G  P  +TF+ VL ACSH GL++EG + F
Sbjct: 485 NEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIF 544

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           +S+   YG  P++KH+AC++DILGRAG       FI    + P   VWE LLGAC  H +
Sbjct: 545 NSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGACRIHKD 604

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
             L    +EKL EL+P     +V  S+I +    +   + VR     + + K P  + IE
Sbjct: 605 TNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIE 664

Query: 599 V 599
           +
Sbjct: 665 I 665



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 116/473 (24%), Positives = 204/473 (43%), Gaps = 22/473 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDME-KKFSKFSLSTVLK 59
           +E A++VF  MPE + + WN +++GY ++    + + +F  + +    +    +L  +L 
Sbjct: 170 VEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILP 229

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             A    ++ G  +H++A + GC    ++    + +YSKCG    A  +F   + PD+VA
Sbjct: 230 AVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVA 289

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           + A+I      G  + +  +F  +  S  K     L SLV     +G      +IH    
Sbjct: 290 YNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPV---SGHLMLIYAIHGYSL 346

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K  F S T V  AL ++Y +   +    ++F+    +   SWNA+ S +      +  + 
Sbjct: 347 KSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAIS 406

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F +M    F PN  T   IL AC+ L  +  GK +H        + +  V T+L+ MY 
Sbjct: 407 LFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYA 466

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G + +A   FD +  K+   +  +I+ Y   G  + AL  F +M   GI     T   
Sbjct: 467 KCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLC 526

Query: 360 CLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
            L  CS    +  G  + +S+  + G    +     +V +  + G +  A    +   ++
Sbjct: 527 VLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQ 586

Query: 419 DTAS-WNMMIGGYVKH-------GLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
              S W  ++G    H        + EK  E     LD    PD + + V+LS
Sbjct: 587 PGPSVWETLLGACRIHKDTNLARTVSEKLFE-----LD----PDNVGYHVLLS 630



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 135/299 (45%), Gaps = 2/299 (0%)

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           HA I  +GF +D  +   L     + G + Y   +F ++   D   +N L   F   ESP
Sbjct: 40  HAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESP 99

Query: 235 DQGLRIFYQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
              L +F  +      KPN  T+   + A S   D   G  +H   I    D   ++G++
Sbjct: 100 HSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHGQAIVDGCDSELLLGSN 159

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG-IKS 352
           +V MY K   +EDA   FD +  KD   +  +I+ Y +      +++ FR +  E   + 
Sbjct: 160 IVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRL 219

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
           +  TL   L   + +  L  G  +HS+A KTG     +V T  +++Y+KCG I  A  +F
Sbjct: 220 DTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLF 279

Query: 413 KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           +     D  ++N MI GY  +G  E +L  F+ ++  G      T V ++    H+ LI
Sbjct: 280 REFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLI 338


>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
          Length = 629

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 165/490 (33%), Positives = 266/490 (54%), Gaps = 9/490 (1%)

Query: 116 DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH 175
           +V A+ AII+     G  +E  + +  MR   V P++F     ++A  +  + +    IH
Sbjct: 103 NVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDVLEIK---KIH 159

Query: 176 AVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD 235
            ++ K+G E D  +G+ALV+ Y++ G + +    FE +  +D V WNA+ + +      +
Sbjct: 160 GLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFE 219

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
             L  F +M  +   P+  T    L   + + D+  G+ +H   +K   D    V  SL+
Sbjct: 220 MVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLI 279

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
           DMY K  C+EDA   F+ +  KD+F++ +I++ + Q G+ +  L+   +M   GI+ +  
Sbjct: 280 DMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLV 339

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTG------HLLDMFVSTALVAMYAKCGSIDDAE 409
           T+ + L  CS +A L +GR +H   + +G       + D+ +  A++ MYAKCGS+ DA 
Sbjct: 340 TVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAH 399

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
            VF+  + +D ASWN+MI GY  HG G +ALE F  M +    PDE+TFV VLSACSH G
Sbjct: 400 LVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAG 459

Query: 470 LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENL 529
            + +G+     +K  Y + PTI+H+ C+ID+LGRAG+  E         +  N +VW  L
Sbjct: 460 FVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRAL 519

Query: 530 LGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589
           L AC  H +  L E  A+++ ELEP+   +YV  S++    GR+ +   VR  +  Q ++
Sbjct: 520 LAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVR 579

Query: 590 KEPSCSWIEV 599
           K P CSWIE+
Sbjct: 580 KTPGCSWIEL 589



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 198/403 (49%), Gaps = 10/403 (2%)

Query: 13  ELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQV 72
           E+NV ++NA+++G+  +G  ++    +  M++      KF+    +K   +   IK    
Sbjct: 101 EINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDVLEIKK--- 157

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           +H +  + G  LD F+  +LV+ Y K GL ++A   F  +   DVV W A++    Q G 
Sbjct: 158 IHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQ 217

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
            +   + F  M + SV P++F +T  +      GD   G  IH    K G++S   V N+
Sbjct: 218 FEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNS 277

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           L+ MY +   +     +FE +  +D  SWN++ S  +     D  LR+  +ML  G +P+
Sbjct: 278 LIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPD 337

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSL--DGNHV----VGTSLVDMYDKSGCLED 306
           + T   +L ACS L+ +  G+++H + I   L  DG  +    +  +++DMY K G + D
Sbjct: 338 LVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRD 397

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A + F+ ++NKD+ ++  +I  Y   G    AL+ F +M    +K +E T    L+ CS 
Sbjct: 398 AHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSH 457

Query: 367 VATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
              ++ GR  L  +  K      +   T ++ M  + G +D+A
Sbjct: 458 AGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEA 500



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 165/322 (51%), Gaps = 23/322 (7%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A+  F+ +P  +VV WNA++NGYA+ G  + V+  F  M D     S+F+++  L  
Sbjct: 187 MEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGXLSV 246

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           FA  G +  G+++H  A+++G      +S SL+DMY KC   ++AL++F  +++ D+ +W
Sbjct: 247 FAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSW 306

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +I++  +Q G      ++ + M  + ++P+   +T+++ A +       G  IH  +  
Sbjct: 307 NSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIV 366

Query: 181 YGFE------SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
            G         D L+ NA++ MY + G +     VFE ++++D  SWN +   +  +   
Sbjct: 367 SGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYG 426

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLH---------AHTIKHSLD 285
           ++ L +F +M     KP+  TF+ +L ACS    V  G+            A TI+H   
Sbjct: 427 NEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHY-- 484

Query: 286 GNHVVGTSLVDMYDKSGCLEDA 307
                 T ++DM  ++G L++A
Sbjct: 485 ------TCVIDMLGRAGQLDEA 500


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 196/641 (30%), Positives = 299/641 (46%), Gaps = 111/641 (17%)

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA---------- 119
            + VHA  I  G          L++MY K      A ++F  I +PD +A          
Sbjct: 32  ARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYCA 91

Query: 120 -----------------------WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLT 156
                                  + A+IT     G    A ++F  MR    +P+ F  T
Sbjct: 92  LGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFT 151

Query: 157 SLVRATT--ETGDQRCGESIHAVICKYGF------------------------------- 183
           S++ A       +Q+CG+ +H  + K G                                
Sbjct: 152 SVLSALVLFVGNEQQCGQ-MHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVS 210

Query: 184 ---------ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
                    + D L    +++ Y+ N  ++    VFEA+      +WNA+ S +      
Sbjct: 211 ARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCF 270

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV----V 290
            + L +  +M   G + +  T+  I+ AC+++     GKQ+HA+ +K+ L+ NH     V
Sbjct: 271 QEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSV 330

Query: 291 GTSLVDMYDK-------------------------------SGCLEDAGVAFDSLANKDL 319
             +L+ +Y K                               +G +E+A   F+ +  K+L
Sbjct: 331 SNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNL 390

Query: 320 FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSI 379
              T +I+  AQ G  +  LK F++MRL+G +  +F  A  L  CS +  L NGR LH+ 
Sbjct: 391 LTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQ 450

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
            V  G+   + V  A+++MYAKCG ++ AE+VF      D  SWN MI    +HG G KA
Sbjct: 451 LVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKA 510

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMID 499
           +E F  ML EG  PD ITF+ VL+ACSH GL+E+G+ +F+S+ + YGITP   H+A M+D
Sbjct: 511 IELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVD 570

Query: 500 ILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESN 559
           +  RAG F+     I      P A VWE LL  C  HGN++L  + AE+L +L P+ +  
Sbjct: 571 LFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGT 630

Query: 560 YVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           YV  S+I A  GRWN+ + VR L+  Q ++KEP+CSWIEV+
Sbjct: 631 YVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVE 671



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 143/616 (23%), Positives = 258/616 (41%), Gaps = 114/616 (18%)

Query: 1   MELAKRVFKSMPEL--NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVL 58
           +EL + +F   P    + V +NA++ GYA +GDG   + LF +M+  + +   F+ ++VL
Sbjct: 95  LELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVL 154

Query: 59  K------------GFANSGYIKAGQ---------------VVHAMAIRLGCAL------- 84
                        G  +   +K G                V  A  + + C+        
Sbjct: 155 SALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKL 214

Query: 85  -------DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAA 137
                  D+    +++  Y +    + A +VF  + +    AW A+I+     GC QEA 
Sbjct: 215 FDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEAL 274

Query: 138 KIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD----TLVGNAL 193
            +   MR   ++ +    T+++ A    G  + G+ +HA I K     +      V NAL
Sbjct: 275 TLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNAL 334

Query: 194 VSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY-----------ESP-------- 234
           +++Y +N +V    ++F A+  ++ ++WNA+ S + +            E P        
Sbjct: 335 ITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLT 394

Query: 235 ------------DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKH 282
                       D+GL++F QM L GF+P    F   L ACS L  +  G+QLHA  +  
Sbjct: 395 VMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHL 454

Query: 283 SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCF 342
             + +  VG +++ MY K G +E A   F ++ + DL ++ ++I +  Q G    A++ F
Sbjct: 455 GYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELF 514

Query: 343 RKMRLEGIKSNEFTLASCLNGCSPVATLANGR-----LLHSIAVKTGHLLDMFVSTALVA 397
            +M  EG+  +  T  + L  CS    +  GR     +L S  +      D +    +V 
Sbjct: 515 DQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCE--DHYAR--MVD 570

Query: 398 MYAKCGSIDDAEAVFKGSALRDTAS-WNMMIGGYVKHG---LG-EKALEAFRMMLDEGYV 452
           ++ + G    A  V      +  A  W  ++ G   HG   LG E A + F++M      
Sbjct: 571 LFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQ---- 626

Query: 453 PDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIEN 512
            ++ T+V++ +  + +G   E  K    ++K+       K  AC          + E+EN
Sbjct: 627 -NDGTYVLLSNIYADVGRWNEVAK----VRKLMRDQAVRKEPAC---------SWIEVEN 672

Query: 513 ----FITETKLTPNAL 524
               F+ +  + P  L
Sbjct: 673 KVHVFMVDDDVHPEVL 688



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 115/302 (38%), Gaps = 80/302 (26%)

Query: 260 LKACSSLSDVGF--GKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK 317
           L+ CS      F   + +HAH I             L++MY KS  L  A   F+ + N 
Sbjct: 18  LQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPNP 77

Query: 318 DLFAYTAIITS---------------------------------YAQAGEAEMALKCFRK 344
           D  A T +IT+                                 YA  G+   AL+ FR 
Sbjct: 78  DAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRA 137

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGR---LLHSIAVKTGH----------LLDMFV 391
           MR +  + ++FT  S L+    V  + N +    +H   VKTG           LL ++V
Sbjct: 138 MRRDDFRPDDFTFTSVLSAL--VLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYV 195

Query: 392 S------------------------------TALVAMYAKCGSIDDAEAVFKGSALRDTA 421
                                          T ++  Y +   ++ A  VF+       A
Sbjct: 196 KRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGA 255

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           +WN MI GYV  G  ++AL   R M   G   D+IT+  ++SAC+++G  + GK+  + I
Sbjct: 256 AWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYI 315

Query: 482 KK 483
            K
Sbjct: 316 LK 317


>gi|359492976|ref|XP_002283668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 762

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 179/554 (32%), Positives = 285/554 (51%), Gaps = 11/554 (1%)

Query: 57  VLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD 116
           +L+   +   +   Q +HA  ++ G   D FL   LV++Y+KCG  + A KVF  +   +
Sbjct: 75  ILQECIDKKLVSDAQKIHAHIVKTGAHKDAFLMTFLVNVYAKCGTMETARKVFDELPRRN 134

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
           VV+W  ++T        + A ++F  M E+   P  + L + + A+++   +  G+ IH 
Sbjct: 135 VVSWTTLMTGYVHDSKPELAVQVFREMLEAGAYPTNYTLGTALSASSDLHSKELGKQIHG 194

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
              KY  E D  +GN+L S+Y + G +    + F  I  ++ +SW  + S + D      
Sbjct: 195 YSIKYRIEFDASIGNSLCSLYSKCGSLECAVKAFRRIRDKNVISWTTVISAWGDNGEAAT 254

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
           GL+ F +ML +  +PN  T    L  C  +  +  G Q+H+ TIK   + N  +  S++ 
Sbjct: 255 GLQFFVEMLSECVEPNEFTLTSALSLCCVMQSLDIGTQIHSLTIKLGFESNLPIKNSIMY 314

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGE-----------AEMALKCFRKM 345
           +Y K G + +A   FD +    L  + A+I  +A+  +              AL  F K+
Sbjct: 315 LYLKCGWIHEAKKLFDEMETISLVTWNAMIAGHARMMDFAKDDLAAHQCGTEALSIFLKL 374

Query: 346 RLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSI 405
              G+K + FT +S L+ CS +  L  G  +H+  +KTG L D+ V TALV MY KCGSI
Sbjct: 375 NRSGMKPDLFTFSSVLSVCSSLVALEQGEQVHAQTIKTGFLSDVVVGTALVNMYNKCGSI 434

Query: 406 DDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC 465
           + A   F   ++R   SW  MI GY ++G  ++AL  F  M   G  P++ITFV VLSAC
Sbjct: 435 ERASKAFVEMSIRTLISWTSMITGYAQNGQPQQALLLFEDMRLAGVRPNKITFVGVLSAC 494

Query: 466 SHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV 525
           SH G+++E   +F  +K  Y ITP + H+AC+ID+  R G+  E  +FI E  L PN  +
Sbjct: 495 SHAGMVDEALDYFQMMKNEYKITPVMDHYACLIDMFVRLGRLDEAFDFIKEMDLEPNEFI 554

Query: 526 WENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSS 585
           W  L+  C   G +EL    AE+LL L+PK    Y    ++  + G+W + S VR ++  
Sbjct: 555 WSILIAGCRSQGKLELGFYAAEQLLNLKPKDTETYNLLLNMYLSAGKWKEVSRVRKMMKE 614

Query: 586 QGIKKEPSCSWIEV 599
           + + +    SWI +
Sbjct: 615 EKLGRLKDWSWISI 628



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 140/464 (30%), Positives = 236/464 (50%), Gaps = 19/464 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A++VF  +P  NVVSW  L+ GY      +  + +F  M +     + ++L T L  
Sbjct: 120 METARKVFDELPRRNVVSWTTLMTGYVHDSKPELAVQVFREMLEAGAYPTNYTLGTALSA 179

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ++    + G+ +H  +I+     D  +  SL  +YSKCG  + A+K F RI+D +V++W
Sbjct: 180 SSDLHSKELGKQIHGYSIKYRIEFDASIGNSLCSLYSKCGSLECAVKAFRRIRDKNVISW 239

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+     G      + F  M    V+PN+F LTS +           G  IH++  K
Sbjct: 240 TTVISAWGDNGEAATGLQFFVEMLSECVEPNEFTLTSALSLCCVMQSLDIGTQIHSLTIK 299

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALF---SRFQDYESPD-- 235
            GFES+  + N+++ +Y++ G +    ++F+ +     V+WNA+    +R  D+   D  
Sbjct: 300 LGFESNLPIKNSIMYLYLKCGWIHEAKKLFDEMETISLVTWNAMIAGHARMMDFAKDDLA 359

Query: 236 ------QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
                 + L IF ++   G KP++ TF  +L  CSSL  +  G+Q+HA TIK     + V
Sbjct: 360 AHQCGTEALSIFLKLNRSGMKPDLFTFSSVLSVCSSLVALEQGEQVHAQTIKTGFLSDVV 419

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           VGT+LV+MY+K G +E A  AF  ++ + L ++T++IT YAQ G+ + AL  F  MRL G
Sbjct: 420 VGTALVNMYNKCGSIERASKAFVEMSIRTLISWTSMITGYAQNGQPQQALLLFEDMRLAG 479

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH----LLDMFVSTALVAMYAKCGSI 405
           ++ N+ T    L+ CS  A + +  L +   +K  +    ++D +    L+ M+ + G +
Sbjct: 480 VRPNKITFVGVLSACSH-AGMVDEALDYFQMMKNEYKITPVMDHYA--CLIDMFVRLGRL 536

Query: 406 DDAEAVFKGSALRDTA-SWNMMIGGYVKHGLGEKALEAFRMMLD 448
           D+A    K   L      W+++I G    G  E    A   +L+
Sbjct: 537 DEAFDFIKEMDLEPNEFIWSILIAGCRSQGKLELGFYAAEQLLN 580



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 119/237 (50%), Gaps = 1/237 (0%)

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           +G K     ++ IL+ C     V   +++HAH +K     +  + T LV++Y K G +E 
Sbjct: 63  EGTKVESAFYVPILQECIDKKLVSDAQKIHAHIVKTGAHKDAFLMTFLVNVYAKCGTMET 122

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A   FD L  +++ ++T ++T Y    + E+A++ FR+M   G     +TL + L+  S 
Sbjct: 123 ARKVFDELPRRNVVSWTTLMTGYVHDSKPELAVQVFREMLEAGAYPTNYTLGTALSASSD 182

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           + +   G+ +H  ++K     D  +  +L ++Y+KCGS++ A   F+    ++  SW  +
Sbjct: 183 LHSKELGKQIHGYSIKYRIEFDASIGNSLCSLYSKCGSLECAVKAFRRIRDKNVISWTTV 242

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK 482
           I  +  +G     L+ F  ML E   P+E T    LS C  M  ++ G + H  +IK
Sbjct: 243 ISAWGDNGEAATGLQFFVEMLSECVEPNEFTLTSALSLCCVMQSLDIGTQIHSLTIK 299


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 173/531 (32%), Positives = 277/531 (52%), Gaps = 37/531 (6%)

Query: 105 ALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTE 164
           A+ VF  I++P+ + W  ++           A K++ +M    + PN +    L+++  +
Sbjct: 19  AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAK 78

Query: 165 TGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS---- 220
           +     G+ IH  + K G+E D  V  +L+SMY +NGR+    +VF+  +H+D VS    
Sbjct: 79  SKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTAL 138

Query: 221 ---------------------------WNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
                                      WNA+ S + +  S  + L +F +M+    +P+ 
Sbjct: 139 ITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDE 198

Query: 254 CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
            T + +L AC+    V  G+Q+H+    H    N  +  +L+D+Y K G +E A   F+ 
Sbjct: 199 GTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEG 258

Query: 314 LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG 373
           L+ KD+ ++  +I  Y      + AL  F++M   G   N+ T+ S L  C+ +  +  G
Sbjct: 259 LSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIG 318

Query: 374 RLLHSIAVKTGHLLDMF----VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           R +H    K   L D+     + T+L+ MYAKCG I+ A  VF     +  +SWN MI G
Sbjct: 319 RWIHVYIDKK--LKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFG 376

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITP 489
           +  HG      + F  M   G  PD+ITFV +LSACSH G ++ G+  F S+ + Y ITP
Sbjct: 377 FAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITP 436

Query: 490 TIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKL 549
            ++H+ CMID+LG +G F E +  I    + P+ ++W +LL AC  HGN+EL E  A  L
Sbjct: 437 KLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNL 496

Query: 550 LELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           +++EP+   +YV  S+I AT G W++ + VRALL+ +G+KK P CS IE+D
Sbjct: 497 MKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEID 547



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 141/540 (26%), Positives = 243/540 (45%), Gaps = 68/540 (12%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A  VF ++ E N + WN +L GYA S D    + L+  M  +    + ++   +LK  A 
Sbjct: 19  AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAK 78

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYR------------ 111
           S   + GQ +H   ++LG   D ++  SL+ MY++ G  ++A KVF R            
Sbjct: 79  SKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTAL 138

Query: 112 -------------------IKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQ 152
                              I   DVV+W A+I+   + G  +EA ++F  M +++V+P++
Sbjct: 139 ITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDE 198

Query: 153 FVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEA 212
             + +++ A  ++     G  +H+ I  +GF S+  + NAL+ +Y + G+V     +FE 
Sbjct: 199 GTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEG 258

Query: 213 IAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFG 272
           ++ +D VSWN L   +       + L +F +ML  G  PN  T + IL AC+ L  +  G
Sbjct: 259 LSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIG 318

Query: 273 KQLHAHTIKHSLDGNHV--VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
           + +H +  K   D  +   + TSL+DMY K G +E A   F+S+ +K L ++ A+I  +A
Sbjct: 319 RWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFA 378

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
             G A      F +MR  GI+ ++ T    L+ CS    L  GR +     +     D  
Sbjct: 379 MHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQ-----DYD 433

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
           ++  L                           +  MI      GL ++A E  + M  E 
Sbjct: 434 ITPKL-------------------------EHYGCMIDLLGHSGLFKEAKEMIKTMPME- 467

Query: 451 YVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEI 510
             PD + +  +L AC   G +E  +    ++ K+    P    +  + +I   AG++ E+
Sbjct: 468 --PDGVIWCSLLKACRRHGNLELAESFARNLMKVEPENPG--SYVLLSNIYATAGEWDEV 523



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 112/395 (28%), Positives = 191/395 (48%), Gaps = 40/395 (10%)

Query: 205 YGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACS 264
           Y   VF  I   + + WN +   +     P   L+++  M+  G  PN  TF  +LK+C+
Sbjct: 18  YAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCA 77

Query: 265 SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA 324
                  G+Q+H H +K   + +  V TSL+ MY ++G LEDA   FD  +++D+ +YTA
Sbjct: 78  KSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTA 137

Query: 325 IITSYAQAGE----AEM---------------------------ALKCFRKMRLEGIKSN 353
           +IT YA +G      EM                           AL+ F++M    ++ +
Sbjct: 138 LITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPD 197

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
           E T+ + L+ C+   ++  GR +HS     G   ++ +  AL+ +Y+KCG ++ A  +F+
Sbjct: 198 EGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFE 257

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
           G + +D  SWN +IGGY    L ++AL  F+ ML  G  P+++T V +L AC+H+G I+ 
Sbjct: 258 GLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDI 317

Query: 474 GK-KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
           G+  H    KK+  +T        +ID+  + G   E  + +  + L  +   W  ++  
Sbjct: 318 GRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDI-EAAHQVFNSMLHKSLSSWNAMIFG 376

Query: 533 CSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            + HG        A    +L  +M  N + P DI+
Sbjct: 377 FAMHGR-------ANAGFDLFSRMRKNGIEPDDIT 404



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 85/176 (48%), Gaps = 2/176 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  +F+ +   +VVSWN L+ GY      ++ + LF  M    +  +  ++ ++L  
Sbjct: 249 VETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPA 308

Query: 61  FANSGYIKAGQVVHA-MAIRLGCALD-KFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
            A+ G I  G+ +H  +  +L    +   L  SL+DMY+KCG  + A +VF  +    + 
Sbjct: 309 CAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLS 368

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
           +W A+I      G       +F+ MR++ ++P+      L+ A + +G    G  I
Sbjct: 369 SWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHI 424


>gi|357165628|ref|XP_003580444.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Brachypodium distachyon]
          Length = 779

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 193/613 (31%), Positives = 317/613 (51%), Gaps = 16/613 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +++ +R+F + P+ NVVSWN L+  Y ++G   + + +F  M +   + +  S   V   
Sbjct: 158 VDVVRRLFDATPKRNVVSWNTLVGWYVKTGRPYEALEMFMRMLEDGIRPTPVSFVNVFPA 217

Query: 61  FANSGYIKAGQVVHAMAIRLGCAL--DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
            A S        ++ M I+ G     D F+  S + M+S+ G   +A  VF      ++ 
Sbjct: 218 -AASDDPSWPFFLYGMLIKHGVEYVSDLFVVSSAIAMFSEIGDVQSARMVFDHAAKKNIE 276

Query: 119 AWGAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
            W  +IT   Q G   EA  +F  +M    V  +     S + A +++ D + G+ +H  
Sbjct: 277 VWNTMITGYVQNGQFSEAMDLFIQIMGSKGVPLDVVTFLSAITAASQSQDGKLGQQLHGY 336

Query: 178 ICKYGFES--DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD 235
           + K G  S    ++GNALV MY   G V     +F+ +  +D VSWN + + F   +   
Sbjct: 337 LMK-GMRSTLPVILGNALVVMYSRCGNVHAAFDLFDQLPEKDIVSWNTMVTAFVQNDFDF 395

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
           +GL + YQM   GF  +  T   +L A S+  D+  GKQ H + I+H ++G  +  + L+
Sbjct: 396 EGLLLVYQMHKSGFVADAVTLTAVLSAASNTGDLQIGKQSHGYLIRHGIEGEGL-ESYLI 454

Query: 296 DMYDKSGCLEDAGVAFDSLAN-KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           +MY KSG ++ A   FD   N +D   + A+I  Y Q+G+ E A+  FR M   G++   
Sbjct: 455 NMYSKSGHIDMAQRVFDGYGNDRDEVTWNAMIAGYTQSGQPEQAVLAFRAMVEAGVEPTS 514

Query: 355 FTLASCLNGCSPVAT-LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
            TLAS L  C PV   +  G+ +HS A++     ++FV TALV MY+KCG I  AE VF 
Sbjct: 515 VTLASVLPACEPVGEGVQAGKQIHSFALRHSLDTNIFVGTALVDMYSKCGEITAAENVFD 574

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
               + T ++  MI G  +HG G++AL  F  M D G  PD +TF+  +SAC++ GL++E
Sbjct: 575 RMTEKSTVTYTTMISGLGQHGFGDRALFLFYSMQDNGLKPDAVTFLAAISACNYSGLVDE 634

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNAL-VWENLLGA 532
           G   + S++  +G++ T +H  C++D+L +AG+  E  +F+       N + +W +LL +
Sbjct: 635 GLSLYRSMET-FGLSATPQHHCCIVDLLAKAGRVEEAYDFVESLGEDGNFIAIWGSLLAS 693

Query: 533 CSWHGNIELDEKDAEKLLELEPKMESNY----VFPSDISATQGRWNDFSGVRALLSSQGI 588
           C   G  EL     +KLL +E +    +    V  S + A +G W+    +R  +  +G+
Sbjct: 694 CKAQGKQELTAFVTDKLLNIEKQYGHAHAGYNVLLSQLFAAEGNWSSADSLRREMRVRGL 753

Query: 589 KKEPSCSWIEVDG 601
           +K+   SWI+V G
Sbjct: 754 RKDVGSSWIKVQG 766



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 134/533 (25%), Positives = 240/533 (45%), Gaps = 18/533 (3%)

Query: 20  NALLNGYAESGDGQKVMHLFCSMKDMEKKFSK---FSLSTVLKGFANSGYIKAGQVVHAM 76
           N LL  Y         + L+  +    +   +   ++ S  L   A S  ++ G+ VHA 
Sbjct: 66  NVLLIAYVAGALPDHALGLYGVLNHAARPPPRSDHYTYSCALTACARSRRLRLGRSVHAH 125

Query: 77  AIRLGCALDK--FLSCSLVDMYSKC-----GLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
            +R   +L     L  SL+++Y+ C     G  D   ++F      +VV+W  ++    +
Sbjct: 126 LLRRARSLPDTAVLRNSLLNLYASCARYRHGGVDVVRRLFDATPKRNVVSWNTLVGWYVK 185

Query: 130 QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE--SDT 187
            G   EA ++F  M E  ++P      ++  A   + D      ++ ++ K+G E  SD 
Sbjct: 186 TGRPYEALEMFMRMLEDGIRPTPVSFVNVFPAAA-SDDPSWPFFLYGMLIKHGVEYVSDL 244

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML-L 246
            V ++ ++M+ E G V     VF+  A ++   WN + + +       + + +F Q++  
Sbjct: 245 FVVSSAIAMFSEIGDVQSARMVFDHAAKKNIEVWNTMITGYVQNGQFSEAMDLFIQIMGS 304

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV-GTSLVDMYDKSGCLE 305
           KG   ++ TF+  + A S   D   G+QLH + +K       V+ G +LV MY + G + 
Sbjct: 305 KGVPLDVVTFLSAITAASQSQDGKLGQQLHGYLMKGMRSTLPVILGNALVVMYSRCGNVH 364

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
            A   FD L  KD+ ++  ++T++ Q       L    +M   G  ++  TL + L+  S
Sbjct: 365 AAFDLFDQLPEKDIVSWNTMVTAFVQNDFDFEGLLLVYQMHKSGFVADAVTLTAVLSAAS 424

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL-RDTASWN 424
               L  G+  H   ++ G +    + + L+ MY+K G ID A+ VF G    RD  +WN
Sbjct: 425 NTGDLQIGKQSHGYLIRHG-IEGEGLESYLINMYSKSGHIDMAQRVFDGYGNDRDEVTWN 483

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
            MI GY + G  E+A+ AFR M++ G  P  +T   VL AC  +G   +  K   S    
Sbjct: 484 AMIAGYTQSGQPEQAVLAFRAMVEAGVEPTSVTLASVLPACEPVGEGVQAGKQIHSFALR 543

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           + +   I     ++D+  + G+ T  EN + +     + + +  ++     HG
Sbjct: 544 HSLDTNIFVGTALVDMYSKCGEITAAEN-VFDRMTEKSTVTYTTMISGLGQHG 595


>gi|15237290|ref|NP_200097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171558|sp|Q9FLX6.1|PP430_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g52850, chloroplastic; Flags: Precursor
 gi|10177099|dbj|BAB10433.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332008885|gb|AED96268.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 893

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 183/596 (30%), Positives = 311/596 (52%), Gaps = 2/596 (0%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           +F S+   + +SW  +++    +   ++ +  +  M       ++F+   +L   +  G 
Sbjct: 181 LFSSLQNADTISWTMMISSLVGARKWREALQFYSEMVKAGVPPNEFTFVKLLGASSFLG- 239

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           ++ G+ +H+  I  G  L+  L  SLVD YS+    ++A++V     + DV  W ++++ 
Sbjct: 240 LEFGKTIHSNIIVRGIPLNVVLKTSLVDFYSQFSKMEDAVRVLNSSGEQDVFLWTSVVSG 299

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             +    +EA   F  MR   ++PN F  ++++   +       G+ IH+   K GFE  
Sbjct: 300 FVRNLRAKEAVGTFLEMRSLGLQPNNFTYSAILSLCSAVRSLDFGKQIHSQTIKVGFEDS 359

Query: 187 TLVGNALVSMYME-NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           T VGNALV MYM+ +      SRVF A+   + VSW  L     D+        +  +M+
Sbjct: 360 TDVGNALVDMYMKCSASEVEASRVFGAMVSPNVVSWTTLILGLVDHGFVQDCFGLLMEMV 419

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
            +  +PN+ T   +L+ACS L  V    ++HA+ ++  +DG  VVG SLVD Y  S  ++
Sbjct: 420 KREVEPNVVTLSGVLRACSKLRHVRRVLEIHAYLLRRHVDGEMVVGNSLVDAYASSRKVD 479

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
            A     S+  +D   YT+++T + + G+ EMAL     M  +GI+ ++ +L   ++  +
Sbjct: 480 YAWNVIRSMKRRDNITYTSLVTRFNELGKHEMALSVINYMYGDGIRMDQLSLPGFISASA 539

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
            +  L  G+ LH  +VK+G      V  +LV MY+KCGS++DA+ VF+  A  D  SWN 
Sbjct: 540 NLGALETGKHLHCYSVKSGFSGAASVLNSLVDMYSKCGSLEDAKKVFEEIATPDVVSWNG 599

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIY 485
           ++ G   +G    AL AF  M  +   PD +TF+++LSACS+  L + G ++F  +KKIY
Sbjct: 600 LVSGLASNGFISSALSAFEEMRMKETEPDSVTFLILLSACSNGRLTDLGLEYFQVMKKIY 659

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKD 545
            I P ++H+  ++ ILGRAG+  E    +    L PNA++++ LL AC + GN+ L E  
Sbjct: 660 NIEPQVEHYVHLVGILGRAGRLEEATGVVETMHLKPNAMIFKTLLRACRYRGNLSLGEDM 719

Query: 546 AEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           A K L L P   + Y+  +D+    G+       R L++ + + K+   S +EV G
Sbjct: 720 ANKGLALAPSDPALYILLADLYDESGKPELAQKTRNLMTEKRLSKKLGKSTVEVQG 775



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 143/577 (24%), Positives = 269/577 (46%), Gaps = 10/577 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F  M    V +W  +++ + +S +    + LF  M       ++F+ S+V++  A 
Sbjct: 77  ARKLFDEMSHRTVFAWTVMISAFTKSQEFASALSLFEEMMASGTHPNEFTFSSVVRSCAG 136

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              I  G  VH   I+ G   +  +  SL D+YSKCG    A ++F  +++ D ++W  +
Sbjct: 137 LRDISYGGRVHGSVIKTGFEGNSVVGSSLSDLYSKCGQFKEACELFSSLQNADTISWTMM 196

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+ L      +EA + ++ M ++ V PN+F    L+ A++  G +  G++IH+ I   G 
Sbjct: 197 ISSLVGARKWREALQFYSEMVKAGVPPNEFTFVKLLGASSFLGLE-FGKTIHSNIIVRGI 255

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             + ++  +LV  Y +  ++    RV  +   QD   W ++ S F       + +  F +
Sbjct: 256 PLNVVLKTSLVDFYSQFSKMEDAVRVLNSSGEQDVFLWTSVVSGFVRNLRAKEAVGTFLE 315

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G +PN  T+  IL  CS++  + FGKQ+H+ TIK   + +  VG +LVDMY K   
Sbjct: 316 MRSLGLQPNNFTYSAILSLCSAVRSLDFGKQIHSQTIKVGFEDSTDVGNALVDMYMKCSA 375

Query: 304 LE-DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            E +A   F ++ + ++ ++T +I      G  +       +M    ++ N  TL+  L 
Sbjct: 376 SEVEASRVFGAMVSPNVVSWTTLILGLVDHGFVQDCFGLLMEMVKREVEPNVVTLSGVLR 435

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            CS +  +     +H+  ++     +M V  +LV  YA    +D A  V +    RD  +
Sbjct: 436 ACSKLRHVRRVLEIHAYLLRRHVDGEMVVGNSLVDAYASSRKVDYAWNVIRSMKRRDNIT 495

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSI 481
           +  ++  + + G  E AL     M  +G   D+++    +SA +++G +E GK  H  S+
Sbjct: 496 YTSLVTRFNELGKHEMALSVINYMYGDGIRMDQLSLPGFISASANLGALETGKHLHCYSV 555

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE- 540
           K   G +        ++D+  + G   + +    E   TP+ + W  L+   + +G I  
Sbjct: 556 KS--GFSGAASVLNSLVDMYSKCGSLEDAKKVFEEIA-TPDVVSWNGLVSGLASNGFISS 612

Query: 541 -LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDF 576
            L   +  ++ E EP   +  +  S  + + GR  D 
Sbjct: 613 ALSAFEEMRMKETEPDSVTFLILLS--ACSNGRLTDL 647



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 121/409 (29%), Positives = 202/409 (49%), Gaps = 2/409 (0%)

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           F  S   + G  +H   I+ G   +  L  +L+ +Y K     NA K+F  +    V AW
Sbjct: 33  FCESNSSRIGLHIHCPVIKFGLLENLDLCNNLLSLYLKTDGIWNARKLFDEMSHRTVFAW 92

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+   +      A  +F  M  S   PN+F  +S+VR+     D   G  +H  + K
Sbjct: 93  TVMISAFTKSQEFASALSLFEEMMASGTHPNEFTFSSVVRSCAGLRDISYGGRVHGSVIK 152

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GFE +++VG++L  +Y + G+      +F ++ + D++SW  + S         + L+ 
Sbjct: 153 TGFEGNSVVGSSLSDLYSKCGQFKEACELFSSLQNADTISWTMMISSLVGARKWREALQF 212

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           + +M+  G  PN  TF+ +L A SS   + FGK +H++ I   +  N V+ TSLVD Y +
Sbjct: 213 YSEMVKAGVPPNEFTFVKLLGA-SSFLGLEFGKTIHSNIIVRGIPLNVVLKTSLVDFYSQ 271

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
              +EDA    +S   +D+F +T++++ + +   A+ A+  F +MR  G++ N FT ++ 
Sbjct: 272 FSKMEDAVRVLNSSGEQDVFLWTSVVSGFVRNLRAKEAVGTFLEMRSLGLQPNNFTYSAI 331

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSID-DAEAVFKGSALRD 419
           L+ CS V +L  G+ +HS  +K G      V  ALV MY KC + + +A  VF      +
Sbjct: 332 LSLCSAVRSLDFGKQIHSQTIKVGFEDSTDVGNALVDMYMKCSASEVEASRVFGAMVSPN 391

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
             SW  +I G V HG  +        M+     P+ +T   VL ACS +
Sbjct: 392 VVSWTTLILGLVDHGFVQDCFGLLMEMVKREVEPNVVTLSGVLRACSKL 440



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 193/378 (51%), Gaps = 4/378 (1%)

Query: 164 ETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNA 223
           E+   R G  IH  + K+G   +  + N L+S+Y++   +    ++F+ ++H+   +W  
Sbjct: 35  ESNSSRIGLHIHCPVIKFGLLENLDLCNNLLSLYLKTDGIWNARKLFDEMSHRTVFAWTV 94

Query: 224 LFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS 283
           + S F   +     L +F +M+  G  PN  TF  ++++C+ L D+ +G ++H   IK  
Sbjct: 95  MISAFTKSQEFASALSLFEEMMASGTHPNEFTFSSVVRSCAGLRDISYGGRVHGSVIKTG 154

Query: 284 LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFR 343
            +GN VVG+SL D+Y K G  ++A   F SL N D  ++T +I+S   A +   AL+ + 
Sbjct: 155 FEGNSVVGSSLSDLYSKCGQFKEACELFSSLQNADTISWTMMISSLVGARKWREALQFYS 214

Query: 344 KMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403
           +M   G+  NEFT    L G S    L  G+ +HS  +  G  L++ + T+LV  Y++  
Sbjct: 215 EMVKAGVPPNEFTFVKLL-GASSFLGLEFGKTIHSNIIVRGIPLNVVLKTSLVDFYSQFS 273

Query: 404 SIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
            ++DA  V   S  +D   W  ++ G+V++   ++A+  F  M   G  P+  T+  +LS
Sbjct: 274 KMEDAVRVLNSSGEQDVFLWTSVVSGFVRNLRAKEAVGTFLEMRSLGLQPNNFTYSAILS 333

Query: 464 ACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIE-NFITETKLTPN 522
            CS +  ++ GK+  S   K+ G   +      ++D+  +    +E+E + +    ++PN
Sbjct: 334 LCSAVRSLDFGKQIHSQTIKV-GFEDSTDVGNALVDMYMKCSA-SEVEASRVFGAMVSPN 391

Query: 523 ALVWENLLGACSWHGNIE 540
            + W  L+     HG ++
Sbjct: 392 VVSWTTLILGLVDHGFVQ 409



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 112/435 (25%), Positives = 209/435 (48%), Gaps = 26/435 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A RV  S  E +V  W ++++G+  +   ++ +  F  M+ +  + + F+ S +L  
Sbjct: 275 MEDAVRVLNSSGEQDVFLWTSVVSGFVRNLRAKEAVGTFLEMRSLGLQPNNFTYSAILSL 334

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLAD-NALKVFYRIKDPDVVA 119
            +    +  G+ +H+  I++G      +  +LVDMY KC  ++  A +VF  +  P+VV+
Sbjct: 335 CSAVRSLDFGKQIHSQTIKVGFEDSTDVGNALVDMYMKCSASEVEASRVFGAMVSPNVVS 394

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  +I  L   G  Q+   +   M +  V+PN   L+ ++RA ++    R    IHA + 
Sbjct: 395 WTTLILGLVDHGFVQDCFGLLMEMVKREVEPNVVTLSGVLRACSKLRHVRRVLEIHAYLL 454

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           +   + + +VGN+LV  Y  + +V Y   V  ++  +D++++ +L +RF +    +  L 
Sbjct: 455 RRHVDGEMVVGNSLVDAYASSRKVDYAWNVIRSMKRRDNITYTSLVTRFNELGKHEMALS 514

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +   M   G + +  +    + A ++L  +  GK LH +++K    G   V  SLVDMY 
Sbjct: 515 VINYMYGDGIRMDQLSLPGFISASANLGALETGKHLHCYSVKSGFSGAASVLNSLVDMYS 574

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G LEDA   F+ +A  D+ ++  +++  A  G    AL  F +MR++  + +  T   
Sbjct: 575 KCGSLEDAKKVFEEIATPDVVSWNGLVSGLASNGFISSALSAFEEMRMKETEPDSVTFLI 634

Query: 360 CLNGCSPVATLANGRL-------------LHSIAVKTGHLLDMFVSTALVAMYAKCGSID 406
            L+ CS      NGRL             +++I  +  H +       LV +  + G ++
Sbjct: 635 LLSACS------NGRLTDLGLEYFQVMKKIYNIEPQVEHYVH------LVGILGRAGRLE 682

Query: 407 DAEAVFKGSALRDTA 421
           +A  V +   L+  A
Sbjct: 683 EATGVVETMHLKPNA 697


>gi|334187347|ref|NP_680777.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635624|sp|Q3E9N1.2|PP359_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g39952, mitochondrial; Flags: Precursor
 gi|332661744|gb|AEE87144.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 775

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 170/589 (28%), Positives = 310/589 (52%), Gaps = 6/589 (1%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF---AN 63
           VF  MP+ +VV+W A+++G+ ++G+ +  +   C M        K +  T+  GF   +N
Sbjct: 183 VFDEMPDRDVVAWTAIISGHVQNGESEGGLGYLCKMHSAGSDVDKPNPRTLECGFQACSN 242

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G +K G+ +H  A++ G A  KF+  S+   YSK G    A   F  + D D+ +W +I
Sbjct: 243 LGALKEGRCLHGFAVKNGLASSKFVQSSMFSFYSKSGNPSEAYLSFRELGDEDMFSWTSI 302

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I  L + G  +E+  +F  M+   + P+  V++ L+    +      G++ H  + ++ F
Sbjct: 303 IASLARSGDMEESFDMFWEMQNKGMHPDGVVISCLINELGKMMLVPQGKAFHGFVIRHCF 362

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-DSVSWNALFSRFQDYESPDQGLRIFY 242
             D+ V N+L+SMY +   +S   ++F  I+ + +  +WN +   +   +   + + +F 
Sbjct: 363 SLDSTVCNSLLSMYCKFELLSVAEKLFCRISEEGNKEAWNTMLKGYGKMKCHVKCIELFR 422

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           ++   G + +  +   ++ +CS +  V  GK LH + +K SLD    V  SL+D+Y K G
Sbjct: 423 KIQNLGIEIDSASATSVISSCSHIGAVLLGKSLHCYVVKTSLDLTISVVNSLIDLYGKMG 482

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            L  A   F   A+ ++  + A+I SY    ++E A+  F +M  E  K +  TL + L 
Sbjct: 483 DLTVAWRMFCE-ADTNVITWNAMIASYVHCEQSEKAIALFDRMVSENFKPSSITLVTLLM 541

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C    +L  G+++H    +T H +++ +S AL+ MYAKCG ++ +  +F     +D   
Sbjct: 542 ACVNTGSLERGQMIHRYITETEHEMNLSLSAALIDMYAKCGHLEKSRELFDAGNQKDAVC 601

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN+MI GY  HG  E A+  F  M +    P   TF+ +LSAC+H GL+E+GKK F  + 
Sbjct: 602 WNVMISGYGMHGDVESAIALFDQMEESDVKPTGPTFLALLSACTHAGLVEQGKKLFLKMH 661

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           + Y + P +KH++C++D+L R+G   E E+ +     +P+ ++W  LL +C  HG  E+ 
Sbjct: 662 Q-YDVKPNLKHYSCLVDLLSRSGNLEEAESTVMSMPFSPDGVIWGTLLSSCMTHGEFEMG 720

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
            + AE+ +  +P+ +  Y+  +++ +  G+W +    R ++   G+ K 
Sbjct: 721 IRMAERAVASDPQNDGYYIMLANMYSAAGKWEEAERAREMMRESGVGKR 769



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 146/573 (25%), Positives = 251/573 (43%), Gaps = 27/573 (4%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           L+ RVF  +   ++  WN+++  +  +GD  + +  F SM    +    F+   V+   A
Sbjct: 77  LSSRVFHLVTRRDIFLWNSIIKAHFSNGDYARSLCFFFSMLLSGQSPDHFTAPMVVSACA 136

Query: 63  NSGYIKAGQVVHAMAIRLGCALDK--FLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              +   G  VH + ++ G   D+   +  S V  YSKCG   +A  VF  + D DVVAW
Sbjct: 137 ELLWFHVGTFVHGLVLKHG-GFDRNTAVGASFVYFYSKCGFLQDACLVFDEMPDRDVVAW 195

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSV---KPNQFVLTSLVRATTETGDQRCGESIHAV 177
            AII+   Q G  +        M  +     KPN   L    +A +  G  + G  +H  
Sbjct: 196 TAIISGHVQNGESEGGLGYLCKMHSAGSDVDKPNPRTLECGFQACSNLGALKEGRCLHGF 255

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
             K G  S   V +++ S Y ++G  S     F  +  +D  SW ++ +        ++ 
Sbjct: 256 AVKNGLASSKFVQSSMFSFYSKSGNPSEAYLSFRELGDEDMFSWTSIIASLARSGDMEES 315

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
             +F++M  KG  P+      ++     +  V  GK  H   I+H    +  V  SL+ M
Sbjct: 316 FDMFWEMQNKGMHPDGVVISCLINELGKMMLVPQGKAFHGFVIRHCFSLDSTVCNSLLSM 375

Query: 298 YDKSGCLEDAGVAFDSLA---NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           Y K   L  A   F  ++   NK+  A+  ++  Y +       ++ FRK++  GI+ + 
Sbjct: 376 YCKFELLSVAEKLFCRISEEGNKE--AWNTMLKGYGKMKCHVKCIELFRKIQNLGIEIDS 433

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            +  S ++ CS +  +  G+ LH   VKT   L + V  +L+ +Y K G +  A  +F  
Sbjct: 434 ASATSVISSCSHIGAVLLGKSLHCYVVKTSLDLTISVVNSLIDLYGKMGDLTVAWRMF-C 492

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
            A  +  +WN MI  YV     EKA+  F  M+ E + P  IT V +L AC + G +E G
Sbjct: 493 EADTNVITWNAMIASYVHCEQSEKAIALFDRMVSENFKPSSITLVTLLMACVNTGSLERG 552

Query: 475 K---KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLG 531
           +   ++ +  +    ++ +    A +ID+  + G   E    + +     +A+ W  ++ 
Sbjct: 553 QMIHRYITETEHEMNLSLS----AALIDMYAKCGHL-EKSRELFDAGNQKDAVCWNVMIS 607

Query: 532 ACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564
               HG       D E  + L  +ME + V P+
Sbjct: 608 GYGMHG-------DVESAIALFDQMEESDVKPT 633



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 131/499 (26%), Positives = 232/499 (46%), Gaps = 15/499 (3%)

Query: 74  HAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCC 133
           +A+ I  G + + F++  L+  Y+  G  + + +VF+ +   D+  W +II      G  
Sbjct: 47  NALIITGGLSENIFVASKLISSYASYGKPNLSSRVFHLVTRRDIFLWNSIIKAHFSNGDY 106

Query: 134 QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY-GFESDTLVGNA 192
             +   F  M  S   P+ F    +V A  E      G  +H ++ K+ GF+ +T VG +
Sbjct: 107 ARSLCFFFSMLLSGQSPDHFTAPMVVSACAELLWFHVGTFVHGLVLKHGGFDRNTAVGAS 166

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF--- 249
            V  Y + G +     VF+ +  +D V+W A+ S        + GL    +M   G    
Sbjct: 167 FVYFYSKCGFLQDACLVFDEMPDRDVVAWTAIISGHVQNGESEGGLGYLCKMHSAGSDVD 226

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
           KPN  T     +ACS+L  +  G+ LH   +K+ L  +  V +S+   Y KSG   +A +
Sbjct: 227 KPNPRTLECGFQACSNLGALKEGRCLHGFAVKNGLASSKFVQSSMFSFYSKSGNPSEAYL 286

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369
           +F  L ++D+F++T+II S A++G+ E +   F +M+ +G+  +   ++  +N    +  
Sbjct: 287 SFRELGDEDMFSWTSIIASLARSGDMEESFDMFWEMQNKGMHPDGVVISCLINELGKMML 346

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF-KGSALRDTASWNMMIG 428
           +  G+  H   ++    LD  V  +L++MY K   +  AE +F + S   +  +WN M+ 
Sbjct: 347 VPQGKAFHGFVIRHCFSLDSTVCNSLLSMYCKFELLSVAEKLFCRISEEGNKEAWNTMLK 406

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGIT 488
           GY K     K +E FR + + G   D  +   V+S+CSH+G +  GK     + K   + 
Sbjct: 407 GYGKMKCHVKCIELFRKIQNLGIEIDSASATSVISSCSHIGAVLLGKSLHCYVVKT-SLD 465

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEK 548
            TI     +ID+ G+ G  T       E     N + W  ++ +        +  + +EK
Sbjct: 466 LTISVVNSLIDLYGKMGDLTVAWRMFCEAD--TNVITWNAMIAS-------YVHCEQSEK 516

Query: 549 LLELEPKMESNYVFPSDIS 567
            + L  +M S    PS I+
Sbjct: 517 AIALFDRMVSENFKPSSIT 535



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 53/105 (50%)

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C    +L + R  +++ +  G   ++FV++ L++ YA  G  + +  VF     RD   W
Sbjct: 34  CDQSLSLESLRKHNALIITGGLSENIFVASKLISSYASYGKPNLSSRVFHLVTRRDIFLW 93

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
           N +I  +  +G   ++L  F  ML  G  PD  T  +V+SAC+ +
Sbjct: 94  NSIIKAHFSNGDYARSLCFFFSMLLSGQSPDHFTAPMVVSACAEL 138



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 65/136 (47%), Gaps = 9/136 (6%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E ++ +F +  + + V WN +++GY   GD +  + LF  M++ + K +  +   +L  
Sbjct: 584 LEKSRELFDAGNQKDAVCWNVMISGYGMHGDVESAIALFDQMEESDVKPTGPTFLALLSA 643

Query: 61  FANSGYIKAGQVV----HAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DP 115
             ++G ++ G+ +    H   ++      K  SC LVD+ S+ G  + A      +   P
Sbjct: 644 CTHAGLVEQGKKLFLKMHQYDVKPNL---KHYSC-LVDLLSRSGNLEEAESTVMSMPFSP 699

Query: 116 DVVAWGAIITCLDQQG 131
           D V WG +++     G
Sbjct: 700 DGVIWGTLLSSCMTHG 715


>gi|242056803|ref|XP_002457547.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
 gi|241929522|gb|EES02667.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
          Length = 762

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 182/586 (31%), Positives = 297/586 (50%), Gaps = 6/586 (1%)

Query: 15  NVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLKGFANSGYIKAGQVV 73
           N  +W  ++      G G   + LF  M ++ E      +++TVL    N      G  +
Sbjct: 101 NAKTWTIMMRMLPADGRGSDAVSLFRDMLREGEASPDDVTITTVL----NVPGCDVG-TL 155

Query: 74  HAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCC 133
           H +  +LG      +  +L+D Y K G    A +VF  +   D + + A+I    +QG  
Sbjct: 156 HPVVTKLGFGASVVVCNTLLDAYCKQGFIAAARRVFLEMPHRDSITYNAMIMGCSRQGRH 215

Query: 134 QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNAL 193
            EA ++F  MR   V  + F  +SL+   T   D   G  IH +  +     +  V NAL
Sbjct: 216 GEALELFAAMRREGVDTSHFTFSSLLTVATGMVDLHLGRQIHGLFVRANPSCNVFVNNAL 275

Query: 194 VSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
           +  Y +   +    ++F+ ++ +D+VS+N + S           L++F  M   GF    
Sbjct: 276 LDFYSKCDSLGDLKQLFDEMSERDNVSYNVMISACSWNRCGGMALQLFRDMQTLGFDRRT 335

Query: 254 CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
             +  +L    +L  +  G+Q+HA  I H L     VG +L+DMY K G L+ A   F  
Sbjct: 336 LPYASLLSVAGALPHIKIGRQIHAQLILHGLTLEDFVGNALIDMYSKCGMLDAAKTIFAY 395

Query: 314 LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG 373
            ++K   ++TA+IT   Q G+ E AL+ F  MR  G+  +  T +S +   S +A +  G
Sbjct: 396 KSDKTAISWTALITGCVQNGQNEEALQLFCDMRRAGLSPDRATCSSIMKSSSSLAVIGIG 455

Query: 374 RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKH 433
           R LH+   K+GH+  +F  +AL+ MYAKCG +D+A   F     +++ +WN +I  Y ++
Sbjct: 456 RQLHAYLTKSGHMPSVFSGSALLDMYAKCGCLDEAIRTFNEMPEKNSITWNAVISAYAQY 515

Query: 434 GLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKH 493
           G  + A+  F  ML  G  PD +TF+ VL+AC H GL EE  K+F  ++  Y ++P  +H
Sbjct: 516 GQAKNAIRMFDSMLHCGLCPDPVTFLSVLAACGHNGLAEECMKYFDLMRYYYSMSPWKEH 575

Query: 494 FACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELE 553
           ++C+ID LGRAG F +I+  I E     + ++W ++L +C  +GN +L    AEKL  + 
Sbjct: 576 YSCVIDTLGRAGCFDKIQKVIDEMPFEDDPIIWSSILHSCRIYGNQDLATVAAEKLFTMV 635

Query: 554 PKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           P   + YV  S+I A  G W   + V+ ++  +G+KKE   SW+E+
Sbjct: 636 PTDATAYVILSNIYAKAGNWEGAARVKKIMRDRGVKKESGNSWVEI 681


>gi|15225505|ref|NP_181492.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099847|sp|O80647.1|PP195_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g39620
 gi|3355489|gb|AAC27851.1| hypothetical protein [Arabidopsis thaliana]
 gi|330254604|gb|AEC09698.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 836

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 190/597 (31%), Positives = 308/597 (51%), Gaps = 14/597 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF+ +   +  SW  ++  YA +G  ++V+ LF  M++ + + +K + ++ L+  A 
Sbjct: 253 AESVFEEVWRKDESSWGTMMAAYAHNGFFEEVLELFDLMRNYDVRMNKVAAASALQAAAY 312

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G +  G  +H  A++ G   D  ++ SL+ MYSKCG  + A ++F  I+D DVV+W A+
Sbjct: 313 VGDLVKGIAIHDYAVQQGLIGDVSVATSLMSMYSKCGELEIAEQLFINIEDRDVVSWSAM 372

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I   +Q G   EA  +F  M    +KPN   LTS+++        R G+SIH    K   
Sbjct: 373 IASYEQAGQHDEAISLFRDMMRIHIKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKADI 432

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           ES+     A++SMY + GR S   + FE +  +D+V++NAL   +      ++   ++  
Sbjct: 433 ESELETATAVISMYAKCGRFSPALKAFERLPIKDAVAFNALAQGYTQIGDANKAFDVYKN 492

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M L G  P+  T + +L+ C+  SD   G  ++   IKH  D    V  +L++M+ K   
Sbjct: 493 MKLHGVCPDSRTMVGMLQTCAFCSDYARGSCVYGQIIKHGFDSECHVAHALINMFTKCDA 552

Query: 304 LEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
           L  A V FD     K   ++  ++  Y   G+AE A+  FR+M++E  + N  T  + + 
Sbjct: 553 LAAAIVLFDKCGFEKSTVSWNIMMNGYLLHGQAEEAVATFRQMKVEKFQPNAVTFVNIVR 612

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
             + ++ L  G  +HS  ++ G      V  +LV MYAKCG I+ +E  F   + +   S
Sbjct: 613 AAAELSALRVGMSVHSSLIQCGFCSQTPVGNSLVDMYAKCGMIESSEKCFIEISNKYIVS 672

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN M+  Y  HGL   A+  F  M +    PD ++F+ VLSAC H GL+EEGK+ F  + 
Sbjct: 673 WNTMLSAYAAHGLASCAVSLFLSMQENELKPDSVSFLSVLSACRHAGLVEEGKRIFEEMG 732

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           + + I   ++H+ACM+D+LG+AG F E    +   ++  +  VW  LL +   H N+ L 
Sbjct: 733 ERHKIEAEVEHYACMVDLLGKAGLFGEAVEMMRRMRVKTSVGVWGALLNSSRMHCNLWLS 792

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
                +L++LEP   S+Y     +    G  N+ S          IKK P+CSWIEV
Sbjct: 793 NAALCQLVKLEPLNPSHYSQDRRL----GEVNNVS---------RIKKVPACSWIEV 836



 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 144/535 (26%), Positives = 250/535 (46%), Gaps = 5/535 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF  M   +VV+WN +++G A++G     + LF  M+         SL  ++   + 
Sbjct: 154 ARQVFDKMHVKDVVTWNTMVSGLAQNGCSSAALLLFHDMRSCCVDIDHVSLYNLIPAVSK 213

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                  + +H + I+ G       S  L+DMY  C     A  VF  +   D  +WG +
Sbjct: 214 LEKSDVCRCLHGLVIKKGFIFA--FSSGLIDMYCNCADLYAAESVFEEVWRKDESSWGTM 271

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +      G  +E  ++F+LMR   V+ N+    S ++A    GD   G +IH    + G 
Sbjct: 272 MAAYAHNGFFEEVLELFDLMRNYDVRMNKVAAASALQAAAYVGDLVKGIAIHDYAVQQGL 331

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D  V  +L+SMY + G +    ++F  I  +D VSW+A+ + ++     D+ + +F  
Sbjct: 332 IGDVSVATSLMSMYSKCGELEIAEQLFINIEDRDVVSWSAMIASYEQAGQHDEAISLFRD 391

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M+    KPN  T   +L+ C+ ++    GK +H + IK  ++      T+++ MY K G 
Sbjct: 392 MMRIHIKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKADIESELETATAVISMYAKCGR 451

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
              A  AF+ L  KD  A+ A+   Y Q G+A  A   ++ M+L G+  +  T+   L  
Sbjct: 452 FSPALKAFERLPIKDAVAFNALAQGYTQIGDANKAFDVYKNMKLHGVCPDSRTMVGMLQT 511

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL-RDTAS 422
           C+  +  A G  ++   +K G   +  V+ AL+ M+ KC ++  A  +F      + T S
Sbjct: 512 CAFCSDYARGSCVYGQIIKHGFDSECHVAHALINMFTKCDALAAAIVLFDKCGFEKSTVS 571

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN+M+ GY+ HG  E+A+  FR M  E + P+ +TFV ++ A + +  +  G    SS+ 
Sbjct: 572 WNIMMNGYLLHGQAEEAVATFRQMKVEKFQPNAVTFVNIVRAAAELSALRVGMSVHSSLI 631

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           +  G          ++D+  + G     E    E       + W  +L A + HG
Sbjct: 632 QC-GFCSQTPVGNSLVDMYAKCGMIESSEKCFIEIS-NKYIVSWNTMLSAYAAHG 684



 Score =  208 bits (529), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 137/467 (29%), Positives = 233/467 (49%), Gaps = 5/467 (1%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFS--KFSLSTVLK 59
           +L++ +F S+ +  VV WN+++ GY  +G  ++ +  F  M + EK     K+S +  LK
Sbjct: 50  DLSRVIFDSVRDPGVVLWNSMIRGYTRAGLHREALGFFGYMSE-EKGIDPDKYSFTFALK 108

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             A S   K G  +H +   +G   D ++  +LV+MY K     +A +VF ++   DVV 
Sbjct: 109 ACAGSMDFKKGLRIHDLIAEMGLESDVYIGTALVEMYCKARDLVSARQVFDKMHVKDVVT 168

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  +++ L Q GC   A  +F+ MR   V  +   L +L+ A ++         +H ++ 
Sbjct: 169 WNTMVSGLAQNGCSSAALLLFHDMRSCCVDIDHVSLYNLIPAVSKLEKSDVCRCLHGLVI 228

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K GF       + L+ MY     +     VFE +  +D  SW  + + +      ++ L 
Sbjct: 229 KKGF--IFAFSSGLIDMYCNCADLYAAESVFEEVWRKDESSWGTMMAAYAHNGFFEEVLE 286

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F  M     + N       L+A + + D+  G  +H + ++  L G+  V TSL+ MY 
Sbjct: 287 LFDLMRNYDVRMNKVAAASALQAAAYVGDLVKGIAIHDYAVQQGLIGDVSVATSLMSMYS 346

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G LE A   F ++ ++D+ +++A+I SY QAG+ + A+  FR M    IK N  TL S
Sbjct: 347 KCGELEIAEQLFINIEDRDVVSWSAMIASYEQAGQHDEAISLFRDMMRIHIKPNAVTLTS 406

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L GC+ VA    G+ +H  A+K     ++  +TA+++MYAKCG    A   F+   ++D
Sbjct: 407 VLQGCAGVAASRLGKSIHCYAIKADIESELETATAVISMYAKCGRFSPALKAFERLPIKD 466

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
             ++N +  GY + G   KA + ++ M   G  PD  T V +L  C+
Sbjct: 467 AVAFNALAQGYTQIGDANKAFDVYKNMKLHGVCPDSRTMVGMLQTCA 513



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 197/375 (52%), Gaps = 1/375 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E+A+++F ++ + +VVSW+A++  Y ++G   + + LF  M  +  K +  +L++VL+G
Sbjct: 351 LEIAEQLFINIEDRDVVSWSAMIASYEQAGQHDEAISLFRDMMRIHIKPNAVTLTSVLQG 410

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A     + G+ +H  AI+     +   + +++ MY+KCG    ALK F R+   D VA+
Sbjct: 411 CAGVAASRLGKSIHCYAIKADIESELETATAVISMYAKCGRFSPALKAFERLPIKDAVAF 470

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+     Q G   +A  ++  M+   V P+   +  +++      D   G  ++  I K
Sbjct: 471 NALAQGYTQIGDANKAFDVYKNMKLHGVCPDSRTMVGMLQTCAFCSDYARGSCVYGQIIK 530

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDS-VSWNALFSRFQDYESPDQGLR 239
           +GF+S+  V +AL++M+ +   ++    +F+    + S VSWN + + +  +   ++ + 
Sbjct: 531 HGFDSECHVAHALINMFTKCDALAAAIVLFDKCGFEKSTVSWNIMMNGYLLHGQAEEAVA 590

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
            F QM ++ F+PN  TF+ I++A + LS +  G  +H+  I+        VG SLVDMY 
Sbjct: 591 TFRQMKVEKFQPNAVTFVNIVRAAAELSALRVGMSVHSSLIQCGFCSQTPVGNSLVDMYA 650

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G +E +   F  ++NK + ++  ++++YA  G A  A+  F  M+   +K +  +  S
Sbjct: 651 KCGMIESSEKCFIEISNKYIVSWNTMLSAYAAHGLASCAVSLFLSMQENELKPDSVSFLS 710

Query: 360 CLNGCSPVATLANGR 374
            L+ C     +  G+
Sbjct: 711 VLSACRHAGLVEEGK 725



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 118/419 (28%), Positives = 198/419 (47%), Gaps = 6/419 (1%)

Query: 92  LVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLM-RESSVKP 150
           L++ YS     D +  +F  ++DP VV W ++I    + G  +EA   F  M  E  + P
Sbjct: 39  LINAYSLFQRQDLSRVIFDSVRDPGVVLWNSMIRGYTRAGLHREALGFFGYMSEEKGIDP 98

Query: 151 NQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF 210
           +++  T  ++A   + D + G  IH +I + G ESD  +G ALV MY +   +    +VF
Sbjct: 99  DKYSFTFALKACAGSMDFKKGLRIHDLIAEMGLESDVYIGTALVEMYCKARDLVSARQVF 158

Query: 211 EAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVG 270
           + +  +D V+WN + S           L +F+ M       +  +   ++ A S L    
Sbjct: 159 DKMHVKDVVTWNTMVSGLAQNGCSSAALLLFHDMRSCCVDIDHVSLYNLIPAVSKLEKSD 218

Query: 271 FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
             + LH   IK          + L+DMY     L  A   F+ +  KD  ++  ++ +YA
Sbjct: 219 VCRCLHGLVIKKGFI--FAFSSGLIDMYCNCADLYAAESVFEEVWRKDESSWGTMMAAYA 276

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
             G  E  L+ F  MR   ++ N+   AS L   + V  L  G  +H  AV+ G + D+ 
Sbjct: 277 HNGFFEEVLELFDLMRNYDVRMNKVAAASALQAAAYVGDLVKGIAIHDYAVQQGLIGDVS 336

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
           V+T+L++MY+KCG ++ AE +F     RD  SW+ MI  Y + G  ++A+  FR M+   
Sbjct: 337 VATSLMSMYSKCGELEIAEQLFINIEDRDVVSWSAMIASYEQAGQHDEAISLFRDMMRIH 396

Query: 451 YVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFT 508
             P+ +T   VL  C+ +     GK  H  +IK    I   ++    +I +  + G+F+
Sbjct: 397 IKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKA--DIESELETATAVISMYAKCGRFS 453


>gi|356509996|ref|XP_003523727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Glycine max]
          Length = 586

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 158/433 (36%), Positives = 253/433 (58%), Gaps = 3/433 (0%)

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
           G+ +H V+ K GF+   +VGN+++ MY + G V   +RVF  +  ++ +SWNA+ + + +
Sbjct: 23  GKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAARVFNTLPVRNVISWNAMIAGYTN 82

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLD--GNH 288
             + ++ L +F +M  KG  P+  T+   LKACS     G G Q+HA  I+H        
Sbjct: 83  ERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADAAGEGMQIHAALIRHGFPYLAQS 142

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
            V  +LVD+Y K   + +A   FD +  K + +++ +I  YAQ    + A+  FR++R  
Sbjct: 143 AVAGALVDLYVKCRRMAEARKVFDRIEEKSVMSWSTLILGYAQEDNLKEAMDLFRELRES 202

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH-LLDMFVSTALVAMYAKCGSIDD 407
             + + F L+S +   +  A L  G+ +H+  +K  + LL+M V+ +++ MY KCG   +
Sbjct: 203 RHRMDGFVLSSIIGVFADFALLEQGKQMHAYTIKVPYGLLEMSVANSVLDMYMKCGLTVE 262

Query: 408 AEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
           A+A+F+    R+  SW +MI GY KHG+G KA+E F  M + G  PD +T++ VLSACSH
Sbjct: 263 ADALFREMLERNVVSWTVMITGYGKHGIGNKAVELFNEMQENGIEPDSVTYLAVLSACSH 322

Query: 468 MGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWE 527
            GLI+EGKK+FS +     I P ++H+ACM+D+LGR G+  E +N I +  L PN  +W+
Sbjct: 323 SGLIKEGKKYFSILCSNQKIKPKVEHYACMVDLLGRGGRLKEAKNLIEKMPLKPNVGIWQ 382

Query: 528 NLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQG 587
            LL  C  HG++E+ ++  E LL  E    +NYV  S++ A  G W +   +R  L  +G
Sbjct: 383 TLLSVCRMHGDVEMGKQVGEILLRREGNNPANYVMVSNMYAHAGYWKESEKIRETLKRKG 442

Query: 588 IKKEPSCSWIEVD 600
           +KKE   SW+E+D
Sbjct: 443 LKKEAGRSWVEMD 455



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/438 (24%), Positives = 214/438 (48%), Gaps = 12/438 (2%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
           L+ +L   +    +  G+ VH +  +LG  +   +  S++DMYSKCG+   A +VF  + 
Sbjct: 7   LNKILNKCSKRRLLDQGKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAARVFNTLP 66

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES 173
             +V++W A+I     +   +EA  +F  MRE    P+ +  +S ++A +       G  
Sbjct: 67  VRNVISWNAMIAGYTNERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADAAGEGMQ 126

Query: 174 IHAVICKYGFE--SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY 231
           IHA + ++GF   + + V  ALV +Y++  R++   +VF+ I  +  +SW+ L   +   
Sbjct: 127 IHAALIRHGFPYLAQSAVAGALVDLYVKCRRMAEARKVFDRIEEKSVMSWSTLILGYAQE 186

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIV--ILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
           ++  + + +F +  L+  +  M  F++  I+   +  + +  GKQ+HA+TIK       +
Sbjct: 187 DNLKEAMDLFRE--LRESRHRMDGFVLSSIIGVFADFALLEQGKQMHAYTIKVPYGLLEM 244

Query: 290 -VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
            V  S++DMY K G   +A   F  +  +++ ++T +IT Y + G    A++ F +M+  
Sbjct: 245 SVANSVLDMYMKCGLTVEADALFREMLERNVVSWTVMITGYGKHGIGNKAVELFNEMQEN 304

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA-LVAMYAKCGSIDD 407
           GI+ +  T  + L+ CS    +  G+   SI      +       A +V +  + G + +
Sbjct: 305 GIEPDSVTYLAVLSACSHSGLIKEGKKYFSILCSNQKIKPKVEHYACMVDLLGRGGRLKE 364

Query: 408 AEAVFKGSALR-DTASWNMMIGGYVKHGLGEKALEAFRMML-DEGYVPDEITFVVVLSAC 465
           A+ + +   L+ +   W  ++     HG  E   +   ++L  EG  P    +V+V +  
Sbjct: 365 AKNLIEKMPLKPNVGIWQTLLSVCRMHGDVEMGKQVGEILLRREGNNP--ANYVMVSNMY 422

Query: 466 SHMGLIEEGKKHFSSIKK 483
           +H G  +E +K   ++K+
Sbjct: 423 AHAGYWKESEKIRETLKR 440



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 172/345 (49%), Gaps = 15/345 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A RVF ++P  NV+SWNA++ GY    +G++ ++LF  M++  +    ++ S+ LK  + 
Sbjct: 58  AARVFNTLPVRNVISWNAMIAGYTNERNGEEALNLFREMREKGEVPDGYTYSSSLKACSC 117

Query: 64  SGYIKAGQVVHAMAIRLGCAL--DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           +     G  +HA  IR G        ++ +LVD+Y KC     A KVF RI++  V++W 
Sbjct: 118 ADAAGEGMQIHAALIRHGFPYLAQSAVAGALVDLYVKCRRMAEARKVFDRIEEKSVMSWS 177

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK- 180
            +I    Q+   +EA  +F  +RES  + + FVL+S++    +      G+ +HA   K 
Sbjct: 178 TLILGYAQEDNLKEAMDLFRELRESRHRMDGFVLSSIIGVFADFALLEQGKQMHAYTIKV 237

Query: 181 -YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
            YG   +  V N+++ MYM+ G       +F  +  ++ VSW  + + +  +   ++ + 
Sbjct: 238 PYGL-LEMSVANSVLDMYMKCGLTVEADALFREMLERNVVSWTVMITGYGKHGIGNKAVE 296

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHA-----HTIKHSLDGNHVVGTSL 294
           +F +M   G +P+  T++ +L ACS    +  GK+  +       IK  ++        +
Sbjct: 297 LFNEMQENGIEPDSVTYLAVLSACSHSGLIKEGKKYFSILCSNQKIKPKVEHY----ACM 352

Query: 295 VDMYDKSGCLEDAGVAFDSLANK-DLFAYTAIITSYAQAGEAEMA 338
           VD+  + G L++A    + +  K ++  +  +++     G+ EM 
Sbjct: 353 VDLLGRGGRLKEAKNLIEKMPLKPNVGIWQTLLSVCRMHGDVEMG 397



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 147/312 (47%), Gaps = 12/312 (3%)

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKD 318
           IL  CS    +  GKQ+H    K   D   VVG S++DMY K G + +A   F++L  ++
Sbjct: 10  ILNKCSKRRLLDQGKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAARVFNTLPVRN 69

Query: 319 LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHS 378
           + ++ A+I  Y      E AL  FR+MR +G   + +T +S L  CS       G  +H+
Sbjct: 70  VISWNAMIAGYTNERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADAAGEGMQIHA 129

Query: 379 IAVKTG--HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
             ++ G  +L    V+ ALV +Y KC  + +A  VF     +   SW+ +I GY +    
Sbjct: 130 ALIRHGFPYLAQSAVAGALVDLYVKCRRMAEARKVFDRIEEKSVMSWSTLILGYAQEDNL 189

Query: 437 EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFA 495
           ++A++ FR + +  +  D      ++   +   L+E+GK+ H  +IK  YG+   +    
Sbjct: 190 KEAMDLFRELRESRHRMDGFVLSSIIGVFADFALLEQGKQMHAYTIKVPYGLLE-MSVAN 248

Query: 496 CMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPK 555
            ++D+  + G   E +    E  L  N + W  ++     HG          K +EL  +
Sbjct: 249 SVLDMYMKCGLTVEADALFREM-LERNVVSWTVMITGYGKHG-------IGNKAVELFNE 300

Query: 556 MESNYVFPSDIS 567
           M+ N + P  ++
Sbjct: 301 MQENGIEPDSVT 312



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 152/322 (47%), Gaps = 39/322 (12%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A++VF  + E +V+SW+ L+ GYA+  + ++ M LF  +++   +   F LS+++  
Sbjct: 158 MAEARKVFDRIEEKSVMSWSTLILGYAQEDNLKEAMDLFRELRESRHRMDGFVLSSIIGV 217

Query: 61  FANSGYIKAGQVVHAMAIRLGCA-LDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           FA+   ++ G+ +HA  I++    L+  ++ S++DMY KCGL   A  +F  + + +VV+
Sbjct: 218 FADFALLEQGKQMHAYTIKVPYGLLEMSVANSVLDMYMKCGLTVEADALFREMLERNVVS 277

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  +IT   + G   +A ++FN M+E+ ++P+     +++ A + +G  + G+   +++C
Sbjct: 278 WTVMITGYGKHGIGNKAVELFNEMQENGIEPDSVTYLAVLSACSHSGLIKEGKKYFSILC 337

Query: 180 KYGFESDTLVGNA-LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
                   +   A +V +    GR+     + E +                         
Sbjct: 338 SNQKIKPKVEHYACMVDLLGRGGRLKEAKNLIEKMP------------------------ 373

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV-DM 297
                      KPN+  +  +L  C    DV  GKQ+    ++   +GN+     +V +M
Sbjct: 374 ----------LKPNVGIWQTLLSVCRMHGDVEMGKQVGEILLRR--EGNNPANYVMVSNM 421

Query: 298 YDKSGCLEDAGVAFDSLANKDL 319
           Y  +G  +++    ++L  K L
Sbjct: 422 YAHAGYWKESEKIRETLKRKGL 443


>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 175/547 (31%), Positives = 290/547 (53%), Gaps = 3/547 (0%)

Query: 55  STVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
           S+++   A++  +   + VH   I+ G +   FL   L+D Y KCG    A K+F  +  
Sbjct: 5   SSLIAQSAHTKSLTTLRAVHTNVIKSGFSYS-FLGHKLIDGYIKCGSLAEARKLFDELPS 63

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
             +V W ++I+     G  +EA + +  M    V P+ +  +++ +A ++ G  R G+  
Sbjct: 64  RHIVTWNSMISSHISHGKSKEAVEFYGNMLMEGVLPDAYTFSAISKAFSQLGLIRHGQRA 123

Query: 175 HAVICKYGFES-DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           H +    G E  D  V +ALV MY +  ++     VF  +  +D V + AL   +  +  
Sbjct: 124 HGLAVVLGLEVLDGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYAQHGL 183

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
             + L+IF  M+ +G KPN  T   IL  C +L D+  G+ +H   +K  L+      TS
Sbjct: 184 DGEALKIFEDMVNRGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGLESVVASQTS 243

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           L+ MY +   +ED+   F+ L   +   +T+ +    Q G  E+A+  FR+M    I  N
Sbjct: 244 LLTMYSRCNMIEDSIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREMIRCSISPN 303

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
            FTL+S L  CS +A L  G  +H+I +K G   + +   AL+ +Y KCG++D A +VF 
Sbjct: 304 PFTLSSILQACSSLAMLEVGEQIHAITMKLGLDGNKYAGAALINLYGKCGNMDKARSVFD 363

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
                D  + N MI  Y ++G G +ALE F  + + G VP+ +TF+ +L AC++ GL+EE
Sbjct: 364 VLTELDVVAINSMIYAYAQNGFGHEALELFERLKNMGLVPNGVTFISILLACNNAGLVEE 423

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           G + F+SI+  + I  TI HF CMID+LGR+ +  E    I E +  P+ ++W  LL +C
Sbjct: 424 GCQIFASIRNNHNIELTIDHFTCMIDLLGRSRRLEEAAMLIEEVR-NPDVVLWRTLLNSC 482

Query: 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPS 593
             HG +E+ EK   K+LEL P     ++  +++ A+ G+WN    +++ +    +KK P+
Sbjct: 483 KIHGEVEMAEKVMSKILELAPGDGGTHILLTNLYASAGKWNQVIEMKSTIRDLKLKKSPA 542

Query: 594 CSWIEVD 600
            SW++VD
Sbjct: 543 MSWVDVD 549



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 180/350 (51%), Gaps = 9/350 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A  VF+ + E +VV + AL+ GYA+ G   + + +F  M +   K ++++L+ +L  
Sbjct: 153 MRDAHLVFRRVLEKDVVLFTALIVGYAQHGLDGEALKIFEDMVNRGVKPNEYTLACILIN 212

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             N G +  GQ++H + ++ G         SL+ MYS+C + ++++KVF ++   + V W
Sbjct: 213 CGNLGDLVNGQLIHGLVVKSGLESVVASQTSLLTMYSRCNMIEDSIKVFNQLDYANQVTW 272

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            + +  L Q G  + A  IF  M   S+ PN F L+S+++A +       GE IHA+  K
Sbjct: 273 TSFVVGLVQNGREEVAVSIFREMIRCSISPNPFTLSSILQACSSLAMLEVGEQIHAITMK 332

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G + +   G AL+++Y + G +     VF+ +   D V+ N++   +       + L +
Sbjct: 333 LGLDGNKYAGAALINLYGKCGNMDKARSVFDVLTELDVVAINSMIYAYAQNGFGHEALEL 392

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHA-----HTIKHSLDGNHVVGTSLV 295
           F ++   G  PN  TFI IL AC++   V  G Q+ A     H I+ ++D  H   T ++
Sbjct: 393 FERLKNMGLVPNGVTFISILLACNNAGLVEEGCQIFASIRNNHNIELTID--HF--TCMI 448

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM 345
           D+  +S  LE+A +  + + N D+  +  ++ S    GE EMA K   K+
Sbjct: 449 DLLGRSRRLEEAAMLIEEVRNPDVVLWRTLLNSCKIHGEVEMAEKVMSKI 498


>gi|224090799|ref|XP_002309086.1| predicted protein [Populus trichocarpa]
 gi|222855062|gb|EEE92609.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 172/515 (33%), Positives = 275/515 (53%), Gaps = 10/515 (1%)

Query: 95  MYSKCGLADNALKVFYRIKD--PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQ 152
           MY+KC   + AL V  R  D   +V A+ A+I+     G  Q+    +  MR++ V P++
Sbjct: 1   MYAKCNQMNQALLVLNRTADYARNVFAYNALISGFVLNGLPQDGLGAYEEMRQAGVLPDK 60

Query: 153 FVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEA 212
           +    L++   E  +    + IH ++ K G + D  VG++LVS Y+++  +     +F+ 
Sbjct: 61  YTFPCLIKGLCEVMEVFQVKKIHGLVRKLGLDLDMYVGSSLVSSYLKSELMKEARELFDE 120

Query: 213 IAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFG 272
           I  +D V WN++ + +      D+ L +  +M  +G   +  T   +L   +   D   G
Sbjct: 121 IPDRDVVLWNSMVNGYAQIGRFDEALGVCREMSQEGVLMSKFTVSGVLSVFAGRGDFDNG 180

Query: 273 KQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQA 332
           + +H   IK   D    V  +L+DMY K  C+ DA   F+++  KD+F++ +I+++    
Sbjct: 181 RLVHGFMIKMGFDSCVSVCNALIDMYGKCRCVVDALEIFETMNEKDIFSWNSILSANELC 240

Query: 333 GEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG-------- 384
            + +  L+ F +M  +G++ +  T+ + L  CS +A L +GR +H   +  G        
Sbjct: 241 SDHDGTLRLFDRMLGDGVQLDLVTITTILPACSHLAALVHGREIHGYMIVNGFVKDGESE 300

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
           ++ ++    AL+ MYAKCGS+ DA  VF   + RDTASWN+MI GY  HG G +AL  F 
Sbjct: 301 NMYNLQTINALMDMYAKCGSMRDAGMVFYNMSNRDTASWNIMIMGYGMHGYGNEALYMFS 360

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA 504
            M   G  P+EITFV VL ACSH G I +G K    ++  +G+ PTI+H+ C+ID+LGRA
Sbjct: 361 DMCKSGLKPNEITFVGVLLACSHAGFISQGIKFLGEMELKHGVVPTIQHYTCVIDMLGRA 420

Query: 505 GKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564
           G+  E         +  N +VW  LL AC  +GN++L E  A+K+ EL P    NYV  S
Sbjct: 421 GQLEEAYKLAVTMPIQTNPVVWRALLAACQLYGNVDLAEVAAQKVFELNPAHCGNYVLMS 480

Query: 565 DISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +     GR+ +   +R  +  Q +KK P CSWIE+
Sbjct: 481 NAYVAAGRYQEVLDIRHTMRQQDVKKTPGCSWIEL 515



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 115/403 (28%), Positives = 196/403 (48%), Gaps = 9/403 (2%)

Query: 15  NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVH 74
           NV ++NAL++G+  +G  Q  +  +  M+       K++   ++KG      +   + +H
Sbjct: 24  NVFAYNALISGFVLNGLPQDGLGAYEEMRQAGVLPDKYTFPCLIKGLCEVMEVFQVKKIH 83

Query: 75  AMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQ 134
            +  +LG  LD ++  SLV  Y K  L   A ++F  I D DVV W +++    Q G   
Sbjct: 84  GLVRKLGLDLDMYVGSSLVSSYLKSELMKEARELFDEIPDRDVVLWNSMVNGYAQIGRFD 143

Query: 135 EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALV 194
           EA  +   M +  V  ++F ++ ++      GD   G  +H  + K GF+S   V NAL+
Sbjct: 144 EALGVCREMSQEGVLMSKFTVSGVLSVFAGRGDFDNGRLVHGFMIKMGFDSCVSVCNALI 203

Query: 195 SMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMC 254
            MY +   V     +FE +  +D  SWN++ S  +     D  LR+F +ML  G + ++ 
Sbjct: 204 DMYGKCRCVVDALEIFETMNEKDIFSWNSILSANELCSDHDGTLRLFDRMLGDGVQLDLV 263

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSL--DG------NHVVGTSLVDMYDKSGCLED 306
           T   IL ACS L+ +  G+++H + I +    DG      N     +L+DMY K G + D
Sbjct: 264 TITTILPACSHLAALVHGREIHGYMIVNGFVKDGESENMYNLQTINALMDMYAKCGSMRD 323

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           AG+ F +++N+D  ++  +I  Y   G    AL  F  M   G+K NE T    L  CS 
Sbjct: 324 AGMVFYNMSNRDTASWNIMIMGYGMHGYGNEALYMFSDMCKSGLKPNEITFVGVLLACSH 383

Query: 367 VATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
              ++ G + L  + +K G +  +   T ++ M  + G +++A
Sbjct: 384 AGFISQGIKFLGEMELKHGVVPTIQHYTCVIDMLGRAGQLEEA 426



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 163/325 (50%), Gaps = 27/325 (8%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A+ +F  +P+ +VV WN+++NGYA+ G   + + +   M       SKF++S VL  
Sbjct: 111 MKEARELFDEIPDRDVVLWNSMVNGYAQIGRFDEALGVCREMSQEGVLMSKFTVSGVLSV 170

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSC-----SLVDMYSKCGLADNALKVFYRIKDP 115
           FA  G    G++VH   I++G     F SC     +L+DMY KC    +AL++F  + + 
Sbjct: 171 FAGRGDFDNGRLVHGFMIKMG-----FDSCVSVCNALIDMYGKCRCVVDALEIFETMNEK 225

Query: 116 DVVAWGAIIT----CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG 171
           D+ +W +I++    C D  G      ++F+ M    V+ +   +T+++ A +       G
Sbjct: 226 DIFSWNSILSANELCSDHDG----TLRLFDRMLGDGVQLDLVTITTILPACSHLAALVHG 281

Query: 172 ESIHAVICKYGF----ESDTLVG----NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNA 223
             IH  +   GF    ES+ +      NAL+ MY + G +     VF  ++++D+ SWN 
Sbjct: 282 REIHGYMIVNGFVKDGESENMYNLQTINALMDMYAKCGSMRDAGMVFYNMSNRDTASWNI 341

Query: 224 LFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFG-KQLHAHTIKH 282
           +   +  +   ++ L +F  M   G KPN  TF+ +L ACS    +  G K L    +KH
Sbjct: 342 MIMGYGMHGYGNEALYMFSDMCKSGLKPNEITFVGVLLACSHAGFISQGIKFLGEMELKH 401

Query: 283 SLDGNHVVGTSLVDMYDKSGCLEDA 307
            +       T ++DM  ++G LE+A
Sbjct: 402 GVVPTIQHYTCVIDMLGRAGQLEEA 426


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 158/409 (38%), Positives = 247/409 (60%), Gaps = 5/409 (1%)

Query: 191 NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFK 250
           N L++MY++ G +     VF+ +  ++ VSW  + S +   +  D+ L     ML +G +
Sbjct: 4   NILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVR 63

Query: 251 PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVA 310
           PNM T+  +L+AC  L ++   +QLH   IK  LD +  V ++L+D+Y + G LE+A   
Sbjct: 64  PNMFTYSSVLRACDGLFNL---RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRV 120

Query: 311 FDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATL 370
           FD +   DL  +++II  +AQ  + + AL+ F++M+  G  + + TL S L  C+ +A L
Sbjct: 121 FDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALL 180

Query: 371 ANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGY 430
             GR +H   +K     D+ ++ AL+ MY KCGS++DA AVF     +D  SW+ MI G 
Sbjct: 181 ELGRQVHVHVLKYDQ--DLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGL 238

Query: 431 VKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT 490
            ++G  ++AL+ F  M   G  P+ +T V VL ACSH GL+EEG  +F S+K+++GI P 
Sbjct: 239 AQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPG 298

Query: 491 IKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLL 550
            +H+ CMID+LGRAG+ +E  + I E +  P+A+ W  LL AC  H N+++    A+++L
Sbjct: 299 REHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQIL 358

Query: 551 ELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            L+P+    YV  S+I A   RWND + VR  ++++GIKKEP CSWIEV
Sbjct: 359 RLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEV 407



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 94/287 (32%), Positives = 151/287 (52%), Gaps = 5/287 (1%)

Query: 87  FLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRES 146
           FL   L++MY K GL  +A  VF ++ D +VV+W  +I+         +A +   LM   
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 147 SVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYG 206
            V+PN F  +S++RA     + R    +H  I K G +SD  V +AL+ +Y   G +   
Sbjct: 61  GVRPNMFTYSSVLRACDGLFNLR---QLHCCIIKIGLDSDVFVRSALIDVYSRWGELENA 117

Query: 207 SRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266
            RVF+ +   D V W+++ + F      D+ LR+F +M   GF     T   +L+AC+ L
Sbjct: 118 LRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGL 177

Query: 267 SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
           + +  G+Q+H H +K+  D + ++  +L+DMY K G LEDA   F  +  KD+ +++ +I
Sbjct: 178 ALLELGRQVHVHVLKY--DQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMI 235

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG 373
              AQ G ++ ALK F  M++ GIK N  T+   L  CS    +  G
Sbjct: 236 AGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEG 282



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 174/360 (48%), Gaps = 10/360 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF  MP+ NVVSW  +++ Y+ +    K +     M     + + F+ S+VL+  A 
Sbjct: 19  AQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPNMFTYSSVLR--AC 76

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G     Q+ H   I++G   D F+  +L+D+YS+ G  +NAL+VF  +   D+V W +I
Sbjct: 77  DGLFNLRQL-HCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSI 135

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q     EA ++F  M+ +     Q  LTS++RA T       G  +H  + KY  
Sbjct: 136 IAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLKY-- 193

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           + D ++ NAL+ MY + G +   + VF  +  +D +SW+ + +         + L++F  
Sbjct: 194 DQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFES 253

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKH--SLDGNHVVGTSLVDMYDKS 301
           M + G KPN  T + +L ACS    V  G   + H++K    +D        ++D+  ++
Sbjct: 254 MKVLGIKPNYVTIVGVLFACSHAGLVEEG-LYYFHSMKELFGIDPGREHYGCMIDLLGRA 312

Query: 302 GCLEDAGVAFDSL-ANKDLFAYTAIITSYAQAGEAEMALKCFRK-MRLEGIKSNEFTLAS 359
           G L +A    + +    D   + A++ +       ++A+   ++ +RL+   +  + L S
Sbjct: 313 GRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQILRLDPQDAGTYVLLS 372



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 124/247 (50%), Gaps = 4/247 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A RVF  M   ++V W++++ G+A++ DG + + LF  MK       + +L++VL+ 
Sbjct: 114 LENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRA 173

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 ++ G+ VH   ++     D  L+ +L+DMY KCG  ++A  VF R+ + DV++W
Sbjct: 174 CTGLALLELGRQVHVHVLKYD--QDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISW 231

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG-ESIHAVIC 179
             +I  L Q G  +EA K+F  M+   +KPN   +  ++ A +  G    G    H++  
Sbjct: 232 STMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKE 291

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVF-EAIAHQDSVSWNALFSRFQDYESPDQGL 238
            +G +        ++ +    GR+S    +  E     D+V+W AL +  + + + D  +
Sbjct: 292 LFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAI 351

Query: 239 RIFYQML 245
               Q+L
Sbjct: 352 HAAKQIL 358



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 71/145 (48%), Gaps = 9/145 (6%)

Query: 390 FVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDE 449
           F+   L+ MY K G + DA+ VF     R+  SW  MI  Y    L +KALE   +ML E
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 450 GYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTE 509
           G  P+  T+  VL AC   GL    + H   IK   G+   +   + +ID+  R G   E
Sbjct: 61  GVRPNMFTYSSVLRACD--GLFNLRQLHCCIIK--IGLDSDVFVRSALIDVYSRWG---E 113

Query: 510 IENFIT--ETKLTPNALVWENLLGA 532
           +EN +   +  +T + +VW +++  
Sbjct: 114 LENALRVFDEMVTGDLVVWSSIIAG 138


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 192/601 (31%), Positives = 302/601 (50%), Gaps = 61/601 (10%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R+F +MP  ++VSWN++L GY  +G+ +  +  F  M + +      S + ++ GF  
Sbjct: 159 ARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDV----VSWNLMVDGFVE 214

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDM---YSKCGLADNALKVFYRIKDPDVVAW 120
            G + +       +      +    + S V M   +++ G    A ++F ++   +VVAW
Sbjct: 215 VGDLNS-------SWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAW 267

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    Q     EA  +F  M E     N    T+++      G       +   +  
Sbjct: 268 NAMIAAYVQNCHVDEAISLFMEMPEK----NSISWTTVINGYVRMGKLDEARQLLNQMPY 323

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
               + T    A++S Y++N R+    ++F  I+ +D V WN + + +      D+ L +
Sbjct: 324 RNVAAQT----AMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYSQCGRMDEALHL 379

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F QM+ K                                         V   ++V  Y +
Sbjct: 380 FKQMVKKDI---------------------------------------VSWNTMVASYAQ 400

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G ++ A   F+ +  K++ ++ ++I+   Q G    ALK F  M  EG K ++ T A  
Sbjct: 401 VGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACG 460

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L+ C+ +A L  G+ LH + +K+G+  D+FVS AL+ MYAKCGSI  AE +FK     D 
Sbjct: 461 LSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDV 520

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SWN +I  Y  +G G +AL+ F  M  EG  PDE+TFV +LSACSH+GLI++G K F  
Sbjct: 521 VSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKC 580

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + + Y I P  +H+ACM+D+LGRAG+  E    +   K+  NA +W  LLGAC  HGN+E
Sbjct: 581 MVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLE 640

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           L +  AEKLLE EP   SNYV  S++ A  GRW++ + VR L+  +G +K+P  SWIE+ 
Sbjct: 641 LAKFAAEKLLEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQ 700

Query: 601 G 601
            
Sbjct: 701 N 701



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 127/491 (25%), Positives = 226/491 (46%), Gaps = 41/491 (8%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M L  + F+ M E +VVSWN +++G+ E GD       F  + +     +  S  T+L G
Sbjct: 187 MRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNP----NTVSWVTMLCG 242

Query: 61  FANSGYI-KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           FA  G I +A ++   M IR   A +     +++  Y +    D A+ +F  + + + ++
Sbjct: 243 FARFGKIAEARRLFDQMPIRNVVAWN-----AMIAAYVQNCHVDEAISLFMEMPEKNSIS 297

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVR------------------- 160
           W  +I    + G   EA ++ N M   +V     +++  V+                   
Sbjct: 298 WTTVINGYVRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMDDARQIFNQISIRDV 357

Query: 161 ---ATTETGDQRCG---ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA 214
               T   G  +CG   E++H  + K   + D +  N +V+ Y + G++    ++FE + 
Sbjct: 358 VCWNTMIAGYSQCGRMDEALH--LFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMK 415

Query: 215 HQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ 274
            ++ VSWN+L S      S    L+ F  M  +G KP+  TF   L +C+ L+ +  GKQ
Sbjct: 416 EKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQ 475

Query: 275 LHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGE 334
           LH   +K     +  V  +L+ MY K G +  A + F  + + D+ ++ ++I +YA  G 
Sbjct: 476 LHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGN 535

Query: 335 AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA 394
              ALK F KM +EG+  +E T    L+ CS V  +  G  L    V+  ++  +    A
Sbjct: 536 GREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYA 595

Query: 395 -LVAMYAKCGSIDDAEAVFKGSALRDTAS-WNMMIGGYVKHGLGEKALEAFRMMLDEGYV 452
            +V +  + G +++A  + +G  +   A  W  ++G    HG  E A  A   +L+  + 
Sbjct: 596 CMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAEKLLE--FE 653

Query: 453 PDEITFVVVLS 463
           P + +  V+LS
Sbjct: 654 PHKTSNYVLLS 664



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 106/532 (19%), Positives = 227/532 (42%), Gaps = 80/532 (15%)

Query: 91  SLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKP 150
           S++  ++K G   +A ++F  +   ++V+W ++I         +EA ++F+ M    +  
Sbjct: 51  SMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMPTRDL-- 108

Query: 151 NQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF 210
             +  T ++   T  G+     ++  ++    ++ + +  NA+V+ Y +N +     R+F
Sbjct: 109 --YSWTLMITCYTRNGELAKARNLFNLL---PYKWNPVCCNAMVAGYAKNRQFDEARRLF 163

Query: 211 EAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM----------LLKGF----------- 249
           +A+  +D VSWN++ + +        GL+ F +M          ++ GF           
Sbjct: 164 DAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWE 223

Query: 250 ------KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL------------------- 284
                  PN  +++ +L   +    +   ++L       ++                   
Sbjct: 224 FFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEA 283

Query: 285 --------DGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAE 336
                   + N +  T++++ Y + G L++A    + +  +++ A TA+I+ Y Q    +
Sbjct: 284 ISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMD 343

Query: 337 MALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALV 396
            A + F ++ +  +        + + G S    +     L    VK     D+     +V
Sbjct: 344 DARQIFNQISIRDV----VCWNTMIAGYSQCGRMDEALHLFKQMVKK----DIVSWNTMV 395

Query: 397 AMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI 456
           A YA+ G +D A  +F+    ++  SWN +I G  ++G    AL++F +M  EG  PD+ 
Sbjct: 396 ASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQS 455

Query: 457 TFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFIT 515
           TF   LS+C+H+  ++ GK+ H   +K  Y     + +   +I +  + G  +  E    
Sbjct: 456 TFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSN--ALITMYAKCGSISSAELLFK 513

Query: 516 ETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           +     + + W +L+ A + +GN         + L+L  KME   V P +++
Sbjct: 514 DIDHF-DVVSWNSLIAAYALNGN-------GREALKLFHKMEVEGVAPDEVT 557



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/295 (20%), Positives = 142/295 (48%), Gaps = 27/295 (9%)

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           +T+  N+++S + +NGR+S   ++F+ +  ++ VSWN++ + +   +  ++  ++F +M 
Sbjct: 45  NTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMP 104

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
            +    ++ ++ +++   +   ++   + L           N V   ++V  Y K+   +
Sbjct: 105 TR----DLYSWTLMITCYTRNGELAKARNLFNLL---PYKWNPVCCNAMVAGYAKNRQFD 157

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
           +A   FD++  KDL ++ +++T Y + GE  + L+ F +M    + S        ++G  
Sbjct: 158 EARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLM----VDGFV 213

Query: 366 PVATL-ANGRLLHSIAVKTGHLLDMFVSTALVAM---YAKCGSIDDAEAVFKGSALRDTA 421
            V  L ++      I            + + V M   +A+ G I +A  +F    +R+  
Sbjct: 214 EVGDLNSSWEFFEKIPNPN--------TVSWVTMLCGFARFGKIAEARRLFDQMPIRNVV 265

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
           +WN MI  YV++   ++A+  F  M ++    + I++  V++    MG ++E ++
Sbjct: 266 AWNAMIAAYVQNCHVDEAISLFMEMPEK----NSISWTTVINGYVRMGKLDEARQ 316



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 104/254 (40%), Gaps = 17/254 (6%)

Query: 279 TIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMA 338
             +H    N V   S++  + K+G + DA   FD +  +++ ++ ++I +Y      E A
Sbjct: 37  VFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEA 96

Query: 339 LKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAM 398
            + F KM    + S    + +C      +A   N  L + +  K     +     A+VA 
Sbjct: 97  RQLFDKMPTRDLYSWTLMI-TCYTRNGELAKARN--LFNLLPYK----WNPVCCNAMVAG 149

Query: 399 YAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITF 458
           YAK    D+A  +F     +D  SWN M+ GY ++G     L+ F  M +     D +++
Sbjct: 150 YAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAER----DVVSW 205

Query: 459 VVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK 518
            +++     +G +    + F  I       P    +  M+    R GK  E      +  
Sbjct: 206 NLMVDGFVEVGDLNSSWEFFEKIP-----NPNTVSWVTMLCGFARFGKIAEARRLFDQMP 260

Query: 519 LTPNALVWENLLGA 532
           +  N + W  ++ A
Sbjct: 261 IR-NVVAWNAMIAA 273


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 173/546 (31%), Positives = 295/546 (54%), Gaps = 3/546 (0%)

Query: 57  VLKGFANSGYIKAGQVVHAMAIRLGCAL-DKFLSC-SLVDMYSKCGLADNALKVFYRIKD 114
           +LK  A++  +K G+++HA  I    A  D  +   SL+++Y+KC     A  +F  ++ 
Sbjct: 31  LLKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGMRK 90

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRE-SSVKPNQFVLTSLVRATTETGDQRCGES 173
            +VV+WGA++      G   E  ++F  M     ++PN+++  +++ + +++G    G  
Sbjct: 91  RNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQ 150

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
            H    K G      V NAL+ MY     V     V+  +   D  S+N + +   +   
Sbjct: 151 CHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGY 210

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
           P + L +  +M+ +    +  T++     CS L D+  G Q+H    +   + +  V ++
Sbjct: 211 PSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSA 270

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           ++DMY K G + +A   F+ L  K++ ++TAI+ +Y+Q G  E AL  F +M ++G+  N
Sbjct: 271 IIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPN 330

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
           E+T A  LN C+ ++ L +G+LLH+   K+G    + V  AL+ MY+K GSI+ A  VF 
Sbjct: 331 EYTFAVLLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFL 390

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
               RD+ +W+ MI G   HGLG +AL  F+ ML     P  +TFV VLSAC+H+G ++E
Sbjct: 391 EMICRDSITWSAMICGLSHHGLGREALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQE 450

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           G  + + + K  GI P ++H+ C++ +L +AG+  E ENF+  T +  + + W  LL AC
Sbjct: 451 GFYYLNQLMKQTGIEPGVEHYTCIVGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSAC 510

Query: 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPS 593
             H N  L +K AE +L+++P     Y+  S++ A   RW+    +R L+  + +KKEP 
Sbjct: 511 HVHQNYGLGKKVAELVLQMDPGDVGTYILLSNMYAKAKRWDGVVKIRKLMRERNVKKEPG 570

Query: 594 CSWIEV 599
            SWIE+
Sbjct: 571 ASWIEI 576



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 120/456 (26%), Positives = 228/456 (50%), Gaps = 7/456 (1%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDME-KKFSKFSLSTVLKGF 61
           +A+ +F  M + NVVSW AL+ GY  +G   +V+ LF +M  ++  + +++  +T++   
Sbjct: 80  VARILFDGMRKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSC 139

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           ++SG +  G   H  A++ G    +++  +L+ MYS+      A+ V+Y +   DV ++ 
Sbjct: 140 SDSGQVVEGWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYN 199

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            II  L + G   EA ++ + M +  +  +     +     +   D R G  +H  + + 
Sbjct: 200 IIINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRT 259

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G E D+ V +A++ MY + G +    +VF  +  ++ VSW A+ + +      ++ L  F
Sbjct: 260 GAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFF 319

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M + G  PN  TF V+L +C+ +S +G GK LH    K   + + +VG +L++MY KS
Sbjct: 320 PEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKS 379

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G +E A   F  +  +D   ++A+I   +  G    AL  F++M       +  T    L
Sbjct: 380 GSIEAAHKVFLEMICRDSITWSAMICGLSHHGLGREALVVFQEMLAAKECPHYVTFVGVL 439

Query: 362 NGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-D 419
           + C+ + ++  G   L+ +  +TG    +   T +V +  K G +D+AE   K + ++ D
Sbjct: 440 SACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGLLCKAGRLDEAENFMKSTPVKWD 499

Query: 420 TASWNMMIGG---YVKHGLGEKALEAFRMMLDEGYV 452
             +W  ++     +  +GLG+K  E   + +D G V
Sbjct: 500 VVAWRTLLSACHVHQNYGLGKKVAE-LVLQMDPGDV 534



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 151/316 (47%), Gaps = 16/316 (5%)

Query: 257 IVILKACSSLSDVGFGKQLHAHTI--KHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
           I +LK  +   ++ FGK +HAH I    +   N V   SL+++Y K   +  A + FD +
Sbjct: 29  IQLLKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGM 88

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFTLASCLNGCSPVATLANG 373
             +++ ++ A++  Y   G     L+ F+ M  ++ ++ NE+  A+ ++ CS    +  G
Sbjct: 89  RKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEG 148

Query: 374 RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKH 433
              H  A+K+G +   +V  AL+ MY++   +  A +V+      D  S+N++I G +++
Sbjct: 149 WQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLEN 208

Query: 434 GLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKH 493
           G   +ALE    M+DE  V D +T+V     CSH+  +  G +      +++        
Sbjct: 209 GYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHC---RMFRTGAEYDS 265

Query: 494 F--ACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551
           F  + +ID+ G+ G            + T N + W  +L A S +G         E+ L 
Sbjct: 266 FVSSAIIDMYGKCGNILNARKVFNRLQ-TKNVVSWTAILAAYSQNGCF-------EEALN 317

Query: 552 LEPKMESNYVFPSDIS 567
             P+ME + + P++ +
Sbjct: 318 FFPEMEVDGLLPNEYT 333


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 180/557 (32%), Positives = 287/557 (51%), Gaps = 31/557 (5%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV-VAWGAIITCLDQQG 131
           +HA  +R        LS +++ +YS   L  ++L +F  +  P   +AW +II C    G
Sbjct: 27  LHAQILRTSLPSPSLLS-TILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCYTSHG 85

Query: 132 CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGN 191
               +   F  M  S   P+  V  S++++ T   D R GES+H  I + G   D    N
Sbjct: 86  LFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCN 145

Query: 192 ALVSMY---------------MENGRVS------------YGS--RVFEAIAHQDSVSWN 222
           AL++MY                + G+ S             GS  +VFE +  +D VSWN
Sbjct: 146 ALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWN 205

Query: 223 ALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKH 282
            + S        +  L +  +M     +P+  T   +L   +   ++  GK++H + I++
Sbjct: 206 TVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRN 265

Query: 283 SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCF 342
             D +  +G+SL+DMY K   ++D+   F  L   D  ++ +II    Q G  +  LK F
Sbjct: 266 GYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFF 325

Query: 343 RKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC 402
           ++M +  IK N  + +S +  C+ + TL  G+ LH   +++    ++F+++ALV MYAKC
Sbjct: 326 QQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKC 385

Query: 403 GSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVL 462
           G+I  A  +F    L D  SW  MI GY  HG    A+  F+ M  EG  P+ + F+ VL
Sbjct: 386 GNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVL 445

Query: 463 SACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPN 522
           +ACSH GL++E  K+F+S+ + Y I P ++H+A + D+LGR G+  E   FI++  + P 
Sbjct: 446 TACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPT 505

Query: 523 ALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRAL 582
             VW  LL AC  H NIEL EK ++KL  ++P+    YV  S+I +  GRW D   +R  
Sbjct: 506 GSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIA 565

Query: 583 LSSQGIKKEPSCSWIEV 599
           +  +G+KK+P+CSWIE+
Sbjct: 566 MRDKGMKKKPACSWIEI 582



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 111/389 (28%), Positives = 184/389 (47%), Gaps = 30/389 (7%)

Query: 7   VFKSMPEL-NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSG 65
           +F S+P     ++W +++  Y   G     +  F  M    K        +VLK      
Sbjct: 61  IFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMK 120

Query: 66  YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNA-------------------- 105
            ++ G+ VH   IRLG   D +   +L++MYSK    +                      
Sbjct: 121 DLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKE 180

Query: 106 ---------LKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLT 156
                     KVF  +   D+V+W  +I+   Q G  ++A  +   M  + ++P+ F L+
Sbjct: 181 KESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLS 240

Query: 157 SLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ 216
           S++    E  +   G+ IH    + G+++D  +G++L+ MY +  RV    RVF  +   
Sbjct: 241 SVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQH 300

Query: 217 DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLH 276
           D +SWN++ +        D+GL+ F QML+   KPN  +F  I+ AC+ L+ +  GKQLH
Sbjct: 301 DGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLH 360

Query: 277 AHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAE 336
            + I+   DGN  + ++LVDMY K G +  A   FD +   D+ ++TA+I  YA  G A 
Sbjct: 361 GYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAY 420

Query: 337 MALKCFRKMRLEGIKSNEFTLASCLNGCS 365
            A+  F++M +EG+K N     + L  CS
Sbjct: 421 DAISLFKRMEVEGVKPNYVAFMAVLTACS 449



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 139/260 (53%)

Query: 5   KRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANS 64
           ++VF+ MP+ ++VSWN +++G A++G  +  + +   M + + +   F+LS+VL  FA  
Sbjct: 190 RKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEY 249

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
             +  G+ +H  AIR G   D F+  SL+DMY+KC   D++ +VFY +   D ++W +II
Sbjct: 250 VNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSII 309

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
               Q G   E  K F  M  + +KPN    +S++ A         G+ +H  I +  F+
Sbjct: 310 AGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFD 369

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
            +  + +ALV MY + G +     +F+ +   D VSW A+   +  +      + +F +M
Sbjct: 370 GNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRM 429

Query: 245 LLKGFKPNMCTFIVILKACS 264
            ++G KPN   F+ +L ACS
Sbjct: 430 EVEGVKPNYVAFMAVLTACS 449



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 147/348 (42%), Gaps = 43/348 (12%)

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF 311
           N+C    +L+  SS+      KQLHA  ++ SL    ++ T ++ +Y     L D+ + F
Sbjct: 6   NLCK--TLLQNPSSVKSKSQAKQLHAQILRTSLPSPSLLST-ILSIYSNLNLLHDSLLIF 62

Query: 312 DSLANKD-LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATL 370
           +SL +     A+ +II  Y   G    +L  F +M   G   +     S L  C+ +  L
Sbjct: 63  NSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDL 122

Query: 371 ANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA-------------------- 410
             G  +H   ++ G   D++   AL+ MY+K  S+++                       
Sbjct: 123 RFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKE 182

Query: 411 ---------VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVV 461
                    VF+    RD  SWN +I G  ++G+ E AL   R M +    PD  T   V
Sbjct: 183 SYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSV 242

Query: 462 LSA-CSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLT 520
           L     ++ L++  + H  +I+  Y     I   + +ID+     K T +++      + 
Sbjct: 243 LPIFAEYVNLLKGKEIHGYAIRNGYDADVFIG--SSLIDMY---AKCTRVDDSCRVFYML 297

Query: 521 P--NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDI 566
           P  + + W +++  C  +G  +   K  +++  L  K++ N+V  S I
Sbjct: 298 PQHDGISWNSIIAGCVQNGMFDEGLKFFQQM--LIAKIKPNHVSFSSI 343



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 83/161 (51%)

Query: 6   RVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSG 65
           RVF  +P+ + +SWN+++ G  ++G   + +  F  M   + K +  S S+++   A+  
Sbjct: 292 RVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLT 351

Query: 66  YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT 125
            +  G+ +H   IR     + F++ +LVDMY+KCG    A  +F +++  D+V+W A+I 
Sbjct: 352 TLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIM 411

Query: 126 CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
                G   +A  +F  M    VKPN     +++ A +  G
Sbjct: 412 GYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAG 452


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 183/629 (29%), Positives = 317/629 (50%), Gaps = 43/629 (6%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A  +FK MP+ N+V+W  +++GY       K   +F  M        + + ++VL     
Sbjct: 176 AWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTG 235

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLA-DNALKVFYRIKDPDVVAWGA 122
              +   +V+  + ++ G   D  +  S++++Y++   A D A+K F  + + +   W  
Sbjct: 236 LQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWST 295

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I  L   G    A  ++      S+ P+Q  L         TG  RCG    A I    
Sbjct: 296 MIAALSHGGRIDAAIAVYGRDPVKSI-PSQTALL--------TGLARCGRITEARILFEQ 346

Query: 183 FESDTLVG-NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
                +V  NA+++ YM+NG V     +F+ +  ++++SW  + + +      ++ L + 
Sbjct: 347 IPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLL 406

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK- 300
             +   G  P++ +      ACS +  +  G+Q+H+  +K     N  V  +L+ MY K 
Sbjct: 407 QALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKC 466

Query: 301 ------------------------------SGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
                                         +  LEDA   FD++ ++D+ ++T II++YA
Sbjct: 467 RNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYA 526

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
           QA   + A++ F+ M  E  K N   L   L+ C  + +   G+ +H++A+K G   ++ 
Sbjct: 527 QAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELI 586

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
           V+ AL++MY KCG  D +  VF     RD  +WN  I G  +HGLG +A++ +  M   G
Sbjct: 587 VANALMSMYFKCGCAD-SHKVFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVG 645

Query: 451 YVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEI 510
            +P+E+TFV +L+ACSH GL++EG + F S+ + YG+TP ++H+ACM+D+LGR G     
Sbjct: 646 VLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGA 705

Query: 511 ENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQ 570
           E FI +  + P+ ++W  LLGAC  H N E+  + AEKL   EP    NYV  S+I ++ 
Sbjct: 706 EKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSL 765

Query: 571 GRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           G W + + +R ++  +G+ KEP CSW+++
Sbjct: 766 GMWVEVAELRKIMKQRGVSKEPGCSWMQI 794



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 137/634 (21%), Positives = 267/634 (42%), Gaps = 103/634 (16%)

Query: 4   AKRVFKSMPELNVVSWNA-------------------------------LLNGYAESGDG 32
           A+ VF +MP  ++++WN+                               LL+GYA  G  
Sbjct: 52  AREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVRTATILLSGYARLGRV 111

Query: 33  QKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCAL---DKFLS 89
                +F  M +          +TV      S Y++ G +   MA RL  A+   D    
Sbjct: 112 LDARRVFDGMPER---------NTVAWNAMVSCYVQNGDIT--MARRLFDAMPSRDVTSW 160

Query: 90  CSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC---LDQQGCCQEAAKIFNLMRES 146
            S+V  Y       +A  +F ++   ++V W  +I+    ++Q G   +   IF +M   
Sbjct: 161 NSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHG---KGWDIFRMMHHE 217

Query: 147 SVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGR-VSY 205
              P+Q    S++ A T   D    E +  ++ K GFESD ++G +++++Y  +   +  
Sbjct: 218 GASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDI 277

Query: 206 GSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSS 265
             + F+ +  ++  +W+ + +        D  + ++ +  +K   P+    +  L  C  
Sbjct: 278 AIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSI-PSQTALLTGLARCGR 336

Query: 266 LSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
           +++            +   D   V   +++  Y ++G +++A   FD +  ++  ++  +
Sbjct: 337 ITEARI-------LFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGM 389

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH 385
           I  YAQ G +E AL   + +   G+  +  +L S    CS +  L  GR +HS+AVK G 
Sbjct: 390 IAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGC 449

Query: 386 LLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL---------- 435
             + +V  AL++MY KC +++    VF    ++DT SWN  I   V++ +          
Sbjct: 450 QFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDN 509

Query: 436 ---------------------GEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
                                G++A+E F+ ML E   P+     ++LS C  +G  + G
Sbjct: 510 MLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLG 569

Query: 475 KK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           ++ H  +IK  +G+   +     ++ +  + G     + F  ++    +   W   +  C
Sbjct: 570 QQIHTVAIK--HGMDSELIVANALMSMYFKCGCADSHKVF--DSMEERDIFTWNTFITGC 625

Query: 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           + HG      ++A K+ E    MES  V P++++
Sbjct: 626 AQHGL----GREAIKMYE---HMESVGVLPNEVT 652



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/428 (22%), Positives = 192/428 (44%), Gaps = 52/428 (12%)

Query: 83  ALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNL 142
           ALDK    + +   ++ G    A +VF  +   D++AW ++I+     G  ++A  +F+ 
Sbjct: 30  ALDKSAHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDA 89

Query: 143 MRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGR 202
           +   +V+    +L+   R       +R  + +         E +T+  NA+VS Y++NG 
Sbjct: 90  ISGGNVRTATILLSGYARLGRVLDARRVFDGMP--------ERNTVAWNAMVSCYVQNGD 141

Query: 203 VSYGSRVFEAIAHQDSVSWNAL-------------------------------FSRFQDY 231
           ++   R+F+A+  +D  SWN++                                S +   
Sbjct: 142 ITMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRI 201

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
           E   +G  IF  M  +G  P+   F  +L A + L D+G  + L    +K   + + V+G
Sbjct: 202 EQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIG 261

Query: 292 TSLVDMYDKSGCLEDAGVA-FDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
           TS++++Y +     D  +  FD +  ++ + ++ +I + +  G  + A+  + +  ++ I
Sbjct: 262 TSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSI 321

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST--ALVAMYAKCGSIDDA 408
            S      + L G +    +   R+L         + D  V +  A++  Y + G +D+A
Sbjct: 322 PSQ----TALLTGLARCGRITEARILFE------QIPDPIVVSWNAMITGYMQNGMVDEA 371

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
           + +F     R+T SW  MI GY ++G  E+AL+  + +   G +P   +      ACSH+
Sbjct: 372 KELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHI 431

Query: 469 GLIEEGKK 476
           G +E G++
Sbjct: 432 GALETGRQ 439



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 115/241 (47%), Gaps = 3/241 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ +F +M   +VVSW  +++ YA++  G + +  F +M    +K +   L+ +L  
Sbjct: 500 LEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSV 559

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
               G  K GQ +H +AI+ G   +  ++ +L+ MY KCG AD+  KVF  +++ D+  W
Sbjct: 560 CGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGCADSH-KVFDSMEERDIFTW 618

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
              IT   Q G  +EA K++  M    V PN+     L+ A +  G    G      + +
Sbjct: 619 NTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSR 678

Query: 181 -YGFESDTLVGNALVSMYMENGRVSYGSR-VFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            YG          +V +    G V    + +++     D+V W+AL    + +++ + G 
Sbjct: 679 DYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIGR 738

Query: 239 R 239
           R
Sbjct: 739 R 739


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 167/466 (35%), Positives = 271/466 (58%), Gaps = 5/466 (1%)

Query: 139 IFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYM 198
           + +L+   S++P++ +   L++  T  G  + G+ +H  +    F +D ++ N+++ MY 
Sbjct: 78  VLDLINNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYA 137

Query: 199 ENGRVSYGSRVFEAIAHQDSVSWNALFSRF-QD--YESPDQGLRIFYQMLLKGFKPNMCT 255
           + G +    +VF+ +  +D V+W ++ + + QD    S    L +F +M+  G +PN   
Sbjct: 138 KCGSLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFA 197

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
              ++K C  L     GKQ+H    K+    N  VG+SLVDMY + G L ++ + FD L 
Sbjct: 198 LSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELE 257

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRL 375
           +K+  ++ A+I+ +A+ GE E AL  F KM+ EG  + EFT ++ L   S   +L  G+ 
Sbjct: 258 SKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKW 317

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           LH+  +K+G  L  +V   L+ MYAK G+I DA+ VF      D  S N M+ GY +HGL
Sbjct: 318 LHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGL 377

Query: 436 GEKALEAF-RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHF 494
           G++A+E F  MML     P++ITF+ VL+ACSH GL++EG  +F  +KK YG+ P + H+
Sbjct: 378 GKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKK-YGLEPKLSHY 436

Query: 495 ACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEP 554
             ++D+ GRAG   + ++FI E  + PNA +W  LLGA   H N E+    A+K+LEL+P
Sbjct: 437 TTVVDLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNTEMGAYAAQKVLELDP 496

Query: 555 KMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
                +   S+I A+ G+W D + VR  +   G+KKEP+CSW+E++
Sbjct: 497 FYPGAHTLLSNIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEIE 542



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 118/389 (30%), Positives = 189/389 (48%), Gaps = 5/389 (1%)

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
           G +K G++VH   +      D  +  S++ MY+KCG  + A +VF  +   DVV W ++I
Sbjct: 105 GKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQVFDEMCVKDVVTWTSMI 164

Query: 125 TCLDQQGCCQEAAK---IFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           T   Q G    A     +F  M    ++PN+F L+SLV+     G    G+ IH    KY
Sbjct: 165 TGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWKY 224

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           GF+ +  VG++LV MY   G +     VF+ +  ++ VSWNAL S F      ++ L +F
Sbjct: 225 GFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALISGFARKGEGEEALGLF 284

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M  +GF     T+  +L + S+   +  GK LHAH +K        VG +L+ MY KS
Sbjct: 285 VKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKS 344

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL-EGIKSNEFTLASC 360
           G + DA   FD L   D+ +  +++  YAQ G  + A++ F +M L   I+ N+ T  S 
Sbjct: 345 GNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSV 404

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L  CS    L  G     +  K G    +   T +V ++ + G +D A++  +   +   
Sbjct: 405 LTACSHAGLLDEGLYYFELMKKYGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPN 464

Query: 421 AS-WNMMIGGYVKHGLGEKALEAFRMMLD 448
           A+ W  ++G    H   E    A + +L+
Sbjct: 465 ATIWGALLGASKMHKNTEMGAYAAQKVLE 493



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 162/311 (52%), Gaps = 4/311 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESG---DGQKVMHLFCSMKDMEKKFSKFSLSTV 57
           +E+A++VF  M   +VV+W +++ GY++ G        + LF  M     + ++F+LS++
Sbjct: 142 LEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSL 201

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
           +K     G    G+ +H    + G   + F+  SLVDMY++CG    +  VF  ++  + 
Sbjct: 202 VKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNE 261

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           V+W A+I+   ++G  +EA  +F  M+       +F  ++L+ +++ TG    G+ +HA 
Sbjct: 262 VSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAH 321

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
           + K G +    VGN L+ MY ++G +    +VF+ +   D VS N++   +  +    + 
Sbjct: 322 MMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEA 381

Query: 238 LRIFYQMLL-KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
           + +F +M+L    +PN  TF+ +L ACS    +  G        K+ L+      T++VD
Sbjct: 382 VELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKKYGLEPKLSHYTTVVD 441

Query: 297 MYDKSGCLEDA 307
           ++ ++G L+ A
Sbjct: 442 LFGRAGLLDQA 452


>gi|449434412|ref|XP_004134990.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g04860-like [Cucumis sativus]
          Length = 704

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 187/596 (31%), Positives = 295/596 (49%), Gaps = 9/596 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R+F   PE +VVSWNAL++GY   G+      LF  M+  E    + +L +++     
Sbjct: 117 AQRLFDDFPEKDVVSWNALISGYTRCGNSHDAFKLFVEMRRREFDPCQRTLVSLMPSCGT 176

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G+ +H + ++ G  LD  +  +LV MY KC   D    +F  I +  VV+W  +
Sbjct: 177 QQLFVQGKSIHGLGVKAGLDLDSQVKNALVSMYGKCADLDGVKLLFGEITEKSVVSWNTM 236

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q G   EA  +F  M E SV  N   + S++ A   TG       IH    K G 
Sbjct: 237 IGAFGQNGLFSEAMLVFKQMLEESVNANSVTMVSILSANANTG------CIHCYATKIGL 290

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             +  V  +LV  Y++ G +     ++ +   ++ V+  A+ S + +       +R++  
Sbjct: 291 VENVSVVTSLVCSYVKCGYIELAELIYMSKLKKNLVALTAIISHYAEKGDMGSVVRLYSI 350

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           +     K +    + I++  +    +G G   H + +K  L  + +V    + MY K   
Sbjct: 351 VQHLDMKLDAVAMVGIIQGFTYPDHIGIGLAFHGYGVKSGLIIDCLVANGFISMYSKFDN 410

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++     F  +  K L ++ ++I+S AQAG +  A+  F +M L G   +  TLAS L+ 
Sbjct: 411 IDAVFSLFQEMHKKTLSSWNSVISSCAQAGRSIDAMALFSQMTLSGYGPDSITLASLLSA 470

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C     L  G +LH   ++    L+ FV TALV MY KCG +D AE VFK       ASW
Sbjct: 471 CCQNGNLHFGEILHCYILRNNLDLEGFVGTALVDMYVKCGRMDFAENVFKSMKEPCLASW 530

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I GY   G    AL  +  M+++G  P++ITF  +L+AC+H GL+EEG+K+F  +KK
Sbjct: 531 NSLISGYGLFGFHNHALLCYTEMMEKGIKPNKITFSGILAACTHGGLVEEGRKYFKIMKK 590

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            +GI P  +H A M+ +LGRAG F E   FI   +  P++ VW  LL AC  H  ++L E
Sbjct: 591 KFGIVPESQHCASMVGMLGRAGLFEEAIVFIQNMETNPDSAVWGALLSACCIHQEVKLGE 650

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
             A+KL     +    +V  S++ A   RWND + +R ++   G   E  CS + +
Sbjct: 651 SVAKKLFFSNCRNGGFFVLMSNLYAASRRWNDVARIRKMMREMG---EDGCSGVSL 703



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 131/454 (28%), Positives = 210/454 (46%), Gaps = 18/454 (3%)

Query: 83  ALDKFL--SCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIF 140
             D+FL  S + +D+YSK G    A ++F    + DVV+W A+I+   + G   +A K+F
Sbjct: 93  GFDQFLYVSTAFLDLYSKLGFVKAAQRLFDDFPEKDVVSWNALISGYTRCGNSHDAFKLF 152

Query: 141 NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMEN 200
             MR     P Q  L SL+ +         G+SIH +  K G + D+ V NALVSMY + 
Sbjct: 153 VEMRRREFDPCQRTLVSLMPSCGTQQLFVQGKSIHGLGVKAGLDLDSQVKNALVSMYGKC 212

Query: 201 GRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVIL 260
             +     +F  I  +  VSWN +   F       + + +F QML +    N  T + IL
Sbjct: 213 ADLDGVKLLFGEITEKSVVSWNTMIGAFGQNGLFSEAMLVFKQMLEESVNANSVTMVSIL 272

Query: 261 KACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLF 320
            A ++   +      H +  K  L  N  V TSLV  Y K G +E A + + S   K+L 
Sbjct: 273 SANANTGCI------HCYATKIGLVENVSVVTSLVCSYVKCGYIELAELIYMSKLKKNLV 326

Query: 321 AYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIA 380
           A TAII+ YA+ G+    ++ +  ++   +K +   +   + G +    +  G   H   
Sbjct: 327 ALTAIISHYAEKGDMGSVVRLYSIVQHLDMKLDAVAMVGIIQGFTYPDHIGIGLAFHGYG 386

Query: 381 VKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKAL 440
           VK+G ++D  V+   ++MY+K  +ID   ++F+    +  +SWN +I    + G    A+
Sbjct: 387 VKSGLIIDCLVANGFISMYSKFDNIDAVFSLFQEMHKKTLSSWNSVISSCAQAGRSIDAM 446

Query: 441 EAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT--IKHF--AC 496
             F  M   GY PD IT   +LSAC      + G  HF  I   Y +     ++ F    
Sbjct: 447 ALFSQMTLSGYGPDSITLASLLSACC-----QNGNLHFGEILHCYILRNNLDLEGFVGTA 501

Query: 497 MIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
           ++D+  + G+    EN     K  P    W +L+
Sbjct: 502 LVDMYVKCGRMDFAENVFKSMK-EPCLASWNSLI 534



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 133/278 (47%), Gaps = 18/278 (6%)

Query: 212 AIAHQDSVSWNALFSRFQDY---ESPDQGLRIFYQMLLKGFKPNMCTFIVILKA------ 262
           ++ H  ++S     S F+ Y   +     L +F ++L    KPN  TF +++KA      
Sbjct: 6   SVGHPATLSLTTFHSAFKFYVEGKCFTPPLLLFRELLRHRVKPNDSTFSLLIKAFVVSSS 65

Query: 263 --------CSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
                   CS  ++     QL  H IK   D    V T+ +D+Y K G ++ A   FD  
Sbjct: 66  TSSFAPSFCSE-NEKAEANQLQTHFIKWGFDQFLYVSTAFLDLYSKLGFVKAAQRLFDDF 124

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
             KD+ ++ A+I+ Y + G +  A K F +MR       + TL S +  C        G+
Sbjct: 125 PEKDVVSWNALISGYTRCGNSHDAFKLFVEMRRREFDPCQRTLVSLMPSCGTQQLFVQGK 184

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
            +H + VK G  LD  V  ALV+MY KC  +D  + +F     +   SWN MIG + ++G
Sbjct: 185 SIHGLGVKAGLDLDSQVKNALVSMYGKCADLDGVKLLFGEITEKSVVSWNTMIGAFGQNG 244

Query: 435 LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE 472
           L  +A+  F+ ML+E    + +T V +LSA ++ G I 
Sbjct: 245 LFSEAMLVFKQMLEESVNANSVTMVSILSANANTGCIH 282



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 107/459 (23%), Positives = 194/459 (42%), Gaps = 54/459 (11%)

Query: 132 CCQEAAKIFNLMRESSVKPNQFVLTSLVRA------TTETGDQRCGES-------IHAVI 178
           C      +F  +    VKPN    + L++A      T+      C E+       +    
Sbjct: 30  CFTPPLLLFRELLRHRVKPNDSTFSLLIKAFVVSSSTSSFAPSFCSENEKAEANQLQTHF 89

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K+GF+    V  A + +Y + G V    R+F+    +D VSWNAL S +    +     
Sbjct: 90  IKWGFDQFLYVSTAFLDLYSKLGFVKAAQRLFDDFPEKDVVSWNALISGYTRCGNSHDAF 149

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           ++F +M  + F P   T + ++ +C +      GK +H   +K  LD +  V  +LV MY
Sbjct: 150 KLFVEMRRREFDPCQRTLVSLMPSCGTQQLFVQGKSIHGLGVKAGLDLDSQVKNALVSMY 209

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K   L+   + F  +  K + ++  +I ++ Q G    A+  F++M  E + +N  T+ 
Sbjct: 210 GKCADLDGVKLLFGEITEKSVVSWNTMIGAFGQNGLFSEAMLVFKQMLEESVNANSVTMV 269

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L+        AN   +H  A K G + ++ V T+LV  Y KCG I+ AE ++     +
Sbjct: 270 SILSAN------ANTGCIHCYATKIGLVENVSVVTSLVCSYVKCGYIELAELIYMSKLKK 323

Query: 419 DTASWNMMIGGYVKHG-LGE-----KALEAFRMMLD--------EGYV-PDEITF----- 458
           +  +   +I  Y + G +G        ++   M LD        +G+  PD I       
Sbjct: 324 NLVALTAIISHYAEKGDMGSVVRLYSIVQHLDMKLDAVAMVGIIQGFTYPDHIGIGLAFH 383

Query: 459 ------VVVLSACSHMGLIEEGKKHFSSIKKIYGI-----TPTIKHFACMIDILGRAGKF 507
                  +++      G I    K F +I  ++ +       T+  +  +I    +AG+ 
Sbjct: 384 GYGVKSGLIIDCLVANGFISMYSK-FDNIDAVFSLFQEMHKKTLSSWNSVISSCAQAGRS 442

Query: 508 TEIENFITETKLT---PNALVWENLLGACSWHGNIELDE 543
            +     ++  L+   P+++   +LL AC  +GN+   E
Sbjct: 443 IDAMALFSQMTLSGYGPDSITLASLLSACCQNGNLHFGE 481


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 173/516 (33%), Positives = 274/516 (53%), Gaps = 35/516 (6%)

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  +IT   ++   + A  ++  +R+   + + F+  S+++A  +    + G+ IH  + 
Sbjct: 92  WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 151

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K G + D  VGNAL+ MY E   V Y   VF+ +  +D VSW+ +       +  D  L 
Sbjct: 152 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALE 211

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV---VGTSLVD 296
           +  +M     +P+    + ++   +  +++  GK +HA+ I++S +  H+     T+L+D
Sbjct: 212 LIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNS-NNEHMGVPTTTALLD 270

Query: 297 MYDK--------------------------SGC-----LEDAGVAFDSLANKDLFAYTAI 325
           MY K                          +GC     LE+A   FDS  N+D+  +TA+
Sbjct: 271 MYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAM 330

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH 385
           +++YAQA   + A   F +MR  G++  + T+ S L+ C+    L  G+ +HS   K   
Sbjct: 331 LSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERV 390

Query: 386 LLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRM 445
            +D  ++TALV MYAKCG I+ A  +F  +  RD   WN +I G+  HG GE+AL+ F  
Sbjct: 391 EVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAE 450

Query: 446 MLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAG 505
           M  +G  P++ITF+ +L ACSH GL+ EGKK F  +   +G+ P I+H+ CM+D+LGRAG
Sbjct: 451 MERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAG 510

Query: 506 KFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSD 565
              E    I    + PN +VW  L+ AC  H N +L E  A +LLE+EP+     V  S+
Sbjct: 511 LLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSN 570

Query: 566 ISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           I A   RW+D +GVR  + + G+KKEP  S IEV+G
Sbjct: 571 IYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNG 606



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 108/460 (23%), Positives = 207/460 (45%), Gaps = 38/460 (8%)

Query: 18  SWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMA 77
            WN ++  Y +    +  ++++  ++ M+ +   F   +VLK      + + G+ +H   
Sbjct: 91  QWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFV 150

Query: 78  IRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAA 137
           ++ G   D F+  +L+ MY +C   + A  VF ++ + DVV+W  +I  L +      A 
Sbjct: 151 LKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMAL 210

Query: 138 KIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK----------------- 180
           ++   M    V+P++  + S+V    +T + R G+++HA + +                 
Sbjct: 211 ELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLD 270

Query: 181 ---------------YGFESDTLVG-NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNAL 224
                           G    T+V   A+++  + + R+     +F++  ++D + W A+
Sbjct: 271 MYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAM 330

Query: 225 FSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL 284
            S +      DQ   +F QM   G +P   T + +L  C+    +  GK +H++  K  +
Sbjct: 331 LSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERV 390

Query: 285 DGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRK 344
           + + ++ T+LVDMY K G +  AG  F    ++D+  + AIIT +A  G  E AL  F +
Sbjct: 391 EVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAE 450

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA-LVAMYAKCG 403
           M  +G+K N+ T    L+ CS    +  G+ L    V T  L+        +V +  + G
Sbjct: 451 MERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAG 510

Query: 404 SIDDAEAVFKGSALR-DTASWNMMIGGYVKHG---LGEKA 439
            +D+A  + K   ++ +T  W  ++     H    LGE A
Sbjct: 511 LLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELA 550



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 173/383 (45%), Gaps = 42/383 (10%)

Query: 218 SVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHA 277
           S  WN + + +     P   L ++ Q+    F+ +      +LKAC  +S    GK++H 
Sbjct: 89  SAQWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHG 148

Query: 278 HTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEM 337
             +K  LD +  VG +L+ MY +  C+E A + FD +  +D+ +++ +I S ++  E +M
Sbjct: 149 FVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDM 208

Query: 338 ALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFV--STAL 395
           AL+  R+M    ++ +E  + S +N  +  A +  G+ +H+  ++  +   M V  +TAL
Sbjct: 209 ALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTAL 268

Query: 396 VAMYAKCG-------------------------------SIDDAEAVFKGSALRDTASWN 424
           + MYAKCG                                +++A A+F  +  RD   W 
Sbjct: 269 LDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWT 328

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
            M+  Y +    ++A   F  M   G  P ++T V +LS C+  G ++ GK   S I K 
Sbjct: 329 AMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKE 388

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEK 544
                 I + A ++D+  + G          E  ++ +  +W  ++   + HG       
Sbjct: 389 RVEVDCILNTA-LVDMYAKCGDINAAGRLFIEA-ISRDICMWNAIITGFAMHGY------ 440

Query: 545 DAEKLLELEPKMESNYVFPSDIS 567
             E+ L++  +ME   V P+DI+
Sbjct: 441 -GEEALDIFAEMERQGVKPNDIT 462



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 167/357 (46%), Gaps = 46/357 (12%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ VF  M E +VVSW+ ++   + + +    + L   M  M+ + S+ ++ +++  
Sbjct: 175 VEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNL 234

Query: 61  FANSGYIKAGQVVHAMAIR------LGCALDKFLSCSLVDMYSKCG---LA--------- 102
           FA++  ++ G+ +HA  IR      +G       + +L+DMY+KCG   LA         
Sbjct: 235 FADTANMRMGKAMHAYVIRNSNNEHMGVPT----TTALLDMYAKCGHLGLARQLFNGLTQ 290

Query: 103 -------------------DNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLM 143
                              + A  +F   ++ DV+ W A+++   Q  C  +A  +F+ M
Sbjct: 291 KTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQM 350

Query: 144 RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRV 203
           R S V+P +  + SL+      G    G+ +H+ I K   E D ++  ALV MY + G +
Sbjct: 351 RTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDI 410

Query: 204 SYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKAC 263
           +   R+F     +D   WNA+ + F  +   ++ L IF +M  +G KPN  TFI +L AC
Sbjct: 411 NAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHAC 470

Query: 264 SSLSDVGFGKQLH---AHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK 317
           S    V  GK+L     HT        H     +VD+  ++G L++A     S+  K
Sbjct: 471 SHAGLVTEGKKLFEKMVHTFGLVPQIEHY--GCMVDLLGRAGLLDEAHEMIKSMPIK 525



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 124/262 (47%), Gaps = 4/262 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ +F S    +V+ W A+L+ YA++    +  +LF  M+    + +K ++ ++L  
Sbjct: 309 LEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSL 368

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A +G +  G+ VH+   +    +D  L+ +LVDMY+KCG  + A ++F      D+  W
Sbjct: 369 CAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMW 428

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI-HAVIC 179
            AIIT     G  +EA  IF  M    VKPN      L+ A +  G    G+ +   ++ 
Sbjct: 429 NAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVH 488

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALFSRFQDYESPDQGL 238
            +G          +V +    G +     + +++    +++ W AL +  + +++P  G 
Sbjct: 489 TFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGE 548

Query: 239 RIFYQMLLKGFKPNMCTFIVIL 260
               Q+L    +P  C + V++
Sbjct: 549 LAATQLL--EIEPENCGYNVLM 568



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 90/210 (42%), Gaps = 17/210 (8%)

Query: 266 LSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
           LS +   KQ+HAH IK     +H +   L D    SG    A   F             +
Sbjct: 53  LSTLEQTKQIHAHIIKTHF--HHALQIPLNDF--PSGLSPSAQWNF-------------V 95

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH 385
           ITSY +  +   AL  + ++R    + + F   S L  C  V+    G+ +H   +K G 
Sbjct: 96  ITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGL 155

Query: 386 LLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRM 445
             D+FV  AL+ MY +C  ++ A  VF     RD  SW+ MI    ++   + ALE  R 
Sbjct: 156 DRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIRE 215

Query: 446 MLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           M      P E+  V +++  +    +  GK
Sbjct: 216 MNFMQVRPSEVAMVSMVNLFADTANMRMGK 245


>gi|224087027|ref|XP_002308034.1| predicted protein [Populus trichocarpa]
 gi|222854010|gb|EEE91557.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 173/560 (30%), Positives = 300/560 (53%), Gaps = 5/560 (0%)

Query: 42  MKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGL 101
           M +  +KF++ +   +L+  ++ G +  G+ +H   I+ G   + F+  SL+ MYS+ G 
Sbjct: 1   MCEFGEKFNEHTCVVILQACSDIGDVVLGEQIHGFVIKSGFEENVFVGTSLISMYSRSGN 60

Query: 102 ADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRA 161
            D A KVF  +   D+     +I    + G  + A  +F  +    + PN +  T+++  
Sbjct: 61  FDEAEKVFNGVGCKDLRCLNCMILEYGKAGYEKRAIGVFIYLISVGLDPNDYTFTNII-- 118

Query: 162 TTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSW 221
              T +   G+ +H +  KYG    T VGNA+++MY +NG V   +R+F  +  ++ +SW
Sbjct: 119 --STCNVEEGKQLHGLAVKYGVLLQTSVGNAVITMYGKNGMVEEAARMFSVMNKKNLISW 176

Query: 222 NALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK 281
            AL S +      ++ +  F ++   G + +      IL  CS   ++  G Q+H   IK
Sbjct: 177 TALISGYTRNGYGEKAVDGFLELRGCGVECDSGLLATILDGCSECKNLDLGTQIHGLVIK 236

Query: 282 HSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKC 341
                +  +GT+L+D+Y K    + A   F+ L+ +   ++ AI+  + +    E     
Sbjct: 237 LGYPCDINIGTALIDLYAKCKNFQSARTVFNGLSPRSTASFNAILVGFIENDSNEEDPMV 296

Query: 342 F-RKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYA 400
           F  ++RL GIK +  + +  L+  +  A+L  GR LH+ ++KTG    + VS AL+ MYA
Sbjct: 297 FLSQLRLAGIKPDSVSFSRLLSLSANRASLVKGRGLHAYSIKTGFAGHISVSNALITMYA 356

Query: 401 KCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVV 460
           KCG ++DA   F   +  D  SWN +I  Y  HG GEKAL  ++ M ++G+ PDEIT +V
Sbjct: 357 KCGIVEDAYQAFNSMSANDCISWNAIISAYSLHGQGEKALLLYQEMEEKGFTPDEITILV 416

Query: 461 VLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLT 520
           +L AC++ GL E+G   F++++  YGI P ++H+ACM+D+LGRAG  ++  + I  +  +
Sbjct: 417 ILQACTYSGLSEDGLHLFNTMESKYGIQPLLEHYACMVDLLGRAGYLSQAMDIINRSPFS 476

Query: 521 PNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVR 580
            + L+W  L+  C   G++ L +  ++ LL+L P    +YV  S+I A +G  ++ S VR
Sbjct: 477 ESTLLWRTLVNVCKLCGDLNLGKLASKHLLDLSPDEAGSYVLVSNIYAGEGMIDEASKVR 536

Query: 581 ALLSSQGIKKEPSCSWIEVD 600
             +    + KE   SW+E+D
Sbjct: 537 TTMKDLKLSKEAGSSWVEID 556



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 141/274 (51%), Gaps = 3/274 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A R+F  M + N++SW AL++GY  +G G+K +  F  ++    +     L+T+L G
Sbjct: 158 VEEAARMFSVMNKKNLISWTALISGYTRNGYGEKAVDGFLELRGCGVECDSGLLATILDG 217

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    +  G  +H + I+LG   D  +  +L+D+Y+KC    +A  VF  +      ++
Sbjct: 218 CSECKNLDLGTQIHGLVIKLGYPCDINIGTALIDLYAKCKNFQSARTVFNGLSPRSTASF 277

Query: 121 GAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            AI+    +    +E   +F + +R + +KP+    + L+  +        G  +HA   
Sbjct: 278 NAILVGFIENDSNEEDPMVFLSQLRLAGIKPDSVSFSRLLSLSANRASLVKGRGLHAYSI 337

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K GF     V NAL++MY + G V    + F +++  D +SWNA+ S +  +   ++ L 
Sbjct: 338 KTGFAGHISVSNALITMYAKCGIVEDAYQAFNSMSANDCISWNAIISAYSLHGQGEKALL 397

Query: 240 IFYQMLLKGFKPNMCTFIVILKAC--SSLSDVGF 271
           ++ +M  KGF P+  T +VIL+AC  S LS+ G 
Sbjct: 398 LYQEMEEKGFTPDEITILVILQACTYSGLSEDGL 431


>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 615

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 175/490 (35%), Positives = 260/490 (53%), Gaps = 10/490 (2%)

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFNLMRES---SVKPNQFVLTSLVRATTETGDQRCGES 173
           V  + AII  L           IF+L R+     + P+ + L  L++A +++        
Sbjct: 102 VYIFNAIIQSLSTSN--NTFTHIFSLYRQMLLIGLSPDTYTLPYLLKACSQSHAFIEALQ 159

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           IHA   K G  S+  V N L+  Y  +G +    +VF+   H D +SW  L   +     
Sbjct: 160 IHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFDQGPHWDLISWTTLIQAYSKMGY 219

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLD--GNHVVG 291
           P + +  F++M       +  T +V+L ACS L D   GK++ A+   H  D   +  +G
Sbjct: 220 PSEAIAAFFRM---NCTADRMTLVVVLSACSQLGDFTLGKKILAYMDHHLFDVHSDVFLG 276

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
            +L+DMY K G    A   F  +  K+L ++ ++I+  A  G  + AL  FR+M+  G+K
Sbjct: 277 NALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRRMQTMGLK 336

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            +  TL   LN C+ +  L  G+ +HS   K     D +V+ ALV MYAKCGSID A  V
Sbjct: 337 PDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYVANALVDMYAKCGSIDQAFMV 396

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F+    +D  S+  MI G+  HG  ++AL  F  M   G  PD +T V VLSACSH GL+
Sbjct: 397 FQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLSACSHAGLL 456

Query: 472 EEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLG 531
           EEG++HF  + ++Y + P  +H+ CM+D+LGRAG  +E E F  +  + P+A VW +LLG
Sbjct: 457 EEGRRHFQDMSRLYHLQPQTEHYGCMVDLLGRAGLISEAEAFTNKMPIVPDASVWGSLLG 516

Query: 532 ACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
           AC  H  +EL E   +KL+E+EP+ +  Y+  S+I ++  RW D    R  +    IKK 
Sbjct: 517 ACKIHAKVELGETVIQKLIEMEPERDGAYILMSNIYSSANRWRDALKWRKAMKQNNIKKT 576

Query: 592 PSCSWIEVDG 601
           P CS IEVDG
Sbjct: 577 PGCSSIEVDG 586



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 121/449 (26%), Positives = 223/449 (49%), Gaps = 25/449 (5%)

Query: 16  VVSWNALLNGYAESGDG-QKVMHLFCSMKDMEKKFSKFSLSTVLKGFANS-GYIKAGQVV 73
           V  +NA++   + S +    +  L+  M  +      ++L  +LK  + S  +I+A Q+ 
Sbjct: 102 VYIFNAIIQSLSTSNNTFTHIFSLYRQMLLIGLSPDTYTLPYLLKACSQSHAFIEALQI- 160

Query: 74  HAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCC 133
           HA +I+ G + + F+  +L+  Y+  G  +   KVF +    D+++W  +I    + G  
Sbjct: 161 HAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFDQGPHWDLISWTTLIQAYSKMGYP 220

Query: 134 QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE--SDTLVGN 191
            EA   F  M  ++   ++  L  ++ A ++ GD   G+ I A +  + F+  SD  +GN
Sbjct: 221 SEAIAAFFRMNCTA---DRMTLVVVLSACSQLGDFTLGKKILAYMDHHLFDVHSDVFLGN 277

Query: 192 ALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKP 251
           AL+ MY++ G+     ++F  +  ++ VSWN++ S         + L +F +M   G KP
Sbjct: 278 ALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRRMQTMGLKP 337

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF 311
           +  T + +L +C++L D+  GK +H++  K+ +  +  V  +LVDMY K G ++ A + F
Sbjct: 338 DSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYVANALVDMYAKCGSIDQAFMVF 397

Query: 312 DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLA 371
            ++  KD+++YTA+I  +A  G+A+ AL  F +M   G++ +  TL   L+ CS    L 
Sbjct: 398 QAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLSACSHAGLLE 457

Query: 372 NGR-------LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF-KGSALRDTASW 423
            GR        L+ +  +T H         +V +  + G I +AEA   K   + D + W
Sbjct: 458 EGRRHFQDMSRLYHLQPQTEHY------GCMVDLLGRAGLISEAEAFTNKMPIVPDASVW 511

Query: 424 NMMIGG---YVKHGLGEKALEAFRMMLDE 449
             ++G    + K  LGE  ++    M  E
Sbjct: 512 GSLLGACKIHAKVELGETVIQKLIEMEPE 540



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 131/266 (49%), Gaps = 5/266 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E  ++VF   P  +++SW  L+  Y++ G   + +  F  M        + +L  VL  
Sbjct: 189 IEAVEKVFDQGPHWDLISWTTLIQAYSKMGYPSEAIAAFFRMNCTA---DRMTLVVVLSA 245

Query: 61  FANSGYIKAGQVVHAMAIR--LGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
            +  G    G+ + A           D FL  +L+DMY KCG    A ++F+ +   ++V
Sbjct: 246 CSQLGDFTLGKKILAYMDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLV 305

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +W ++I+ L  QG  +EA  +F  M+   +KP+   L  ++ +    GD   G+ +H+ I
Sbjct: 306 SWNSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYI 365

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K   ++D  V NALV MY + G +     VF+A+  +D  S+ A+   F  +   D+ L
Sbjct: 366 DKNHMKADGYVANALVDMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRAL 425

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACS 264
            IF +M   G +P+  T + +L ACS
Sbjct: 426 AIFSEMPRMGVRPDHVTLVGVLSACS 451



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 89/165 (53%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
            LA+++F  MP  N+VSWN++++G A  G  ++ +H+F  M+ M  K    +L  VL   
Sbjct: 290 HLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSC 349

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
           AN G ++ G+ VH+   +     D +++ +LVDMY+KCG  D A  VF  +K  DV ++ 
Sbjct: 350 ANLGDLELGKWVHSYIDKNHMKADGYVANALVDMYAKCGSIDQAFMVFQAMKCKDVYSYT 409

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
           A+I      G    A  IF+ M    V+P+   L  ++ A +  G
Sbjct: 410 AMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLSACSHAG 454


>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 591

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 183/553 (33%), Positives = 291/553 (52%), Gaps = 39/553 (7%)

Query: 84  LDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLM 143
           L+K ++ S   M S  G  + A ++F  I  P +  +  +I    ++G  + A  +F  +
Sbjct: 43  LNKLMAFS---MDSSLGDFNYANRIFNHIHHPSLFIYNLMIKAFVKRGSLRSAISLFQQL 99

Query: 144 RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRV 203
           RE  V P+ +    +++     G+ R GE IHA + K G E D  V N+L+ MY E G V
Sbjct: 100 RERGVWPDNYTYPYVLKGIGCIGEVREGEKIHAFVVKTGLEFDPYVCNSLMDMYAELGLV 159

Query: 204 SYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF-KPNMCTFIVILKA 262
              ++VFE +  +D+VSWN + S +   +  ++ + ++ +M ++   KPN  T +  L A
Sbjct: 160 EGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLSA 219

Query: 263 CSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL-------- 314
           C+ L ++  GK++H + I + LD   ++G +L+DMY K GC+  A   FD++        
Sbjct: 220 CAVLRNLELGKEIHDY-IANELDLTPIMGNALLDMYCKCGCVSVAREIFDAMIVKNVNCW 278

Query: 315 -----------------------ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
                                   ++D+  +TA+I  Y Q    E A+  F +M++ G++
Sbjct: 279 TSMVTGYVICGQLDQARYLFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVE 338

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            ++F + + L GC+ +  L  G+ +H+   +    +D  VSTAL+ MYAKCG I+ +  +
Sbjct: 339 PDKFIVVTLLTGCAQLGALEQGKWIHNYIDENRIKMDAVVSTALIEMYAKCGCIEKSLEI 398

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F G    DT SW  +I G   +G   +ALE F  M   G  PD+ITFV VLSAC H GL+
Sbjct: 399 FNGLKDMDTTSWTSIICGLAMNGKTSEALELFEAMQTCGLKPDDITFVAVLSACGHAGLV 458

Query: 472 EEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV---WEN 528
           EEG+K F S+  IY I P ++H+ C ID+LGRAG   E E  + +     N ++   +  
Sbjct: 459 EEGRKLFHSMSSIYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKKLPDQNNEIIVPLYGA 518

Query: 529 LLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGI 588
           LL AC  +GNI++ E+ A  L +++    S +   + I A+  RW D   VR+ +   GI
Sbjct: 519 LLSACRTYGNIDMGERLATALAKVKSSDSSLHTLLASIYASADRWEDVRKVRSKMKDLGI 578

Query: 589 KKEPSCSWIEVDG 601
           KK P  S IEVDG
Sbjct: 579 KKVPGYSAIEVDG 591



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 198/410 (48%), Gaps = 34/410 (8%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A R+F  +   ++  +N ++  + + G  +  + LF  +++       ++   VLKG   
Sbjct: 61  ANRIFNHIHHPSLFIYNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGC 120

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G ++ G+ +HA  ++ G   D ++  SL+DMY++ GL +   +VF  + + D V+W  +
Sbjct: 121 IGEVREGEKIHAFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIM 180

Query: 124 ITCLDQQGCCQEAAKIFNLMR-ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I+   +    +EA  ++  M+ ES+ KPN+  + S + A     +   G+ IH  I    
Sbjct: 181 ISGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIAN-E 239

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAI----------------------------- 213
            +   ++GNAL+ MY + G VS    +F+A+                             
Sbjct: 240 LDLTPIMGNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLFE 299

Query: 214 --AHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGF 271
               +D V W A+ + +  +   +  + +F +M ++G +P+    + +L  C+ L  +  
Sbjct: 300 RSPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQ 359

Query: 272 GKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQ 331
           GK +H +  ++ +  + VV T+L++MY K GC+E +   F+ L + D  ++T+II   A 
Sbjct: 360 GKWIHNYIDENRIKMDAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGLAM 419

Query: 332 AGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR-LLHSIA 380
            G+   AL+ F  M+  G+K ++ T  + L+ C     +  GR L HS++
Sbjct: 420 NGKTSEALELFEAMQTCGLKPDDITFVAVLSACGHAGLVEEGRKLFHSMS 469



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 163/352 (46%), Gaps = 22/352 (6%)

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV--DMYDKSG 302
           LLKG      T+I +LK+C S+S +   KQ+ AH     L  +  +   L+   M    G
Sbjct: 6   LLKG------TYISLLKSCKSMSQL---KQIQAHIFCFGLQQDRDILNKLMAFSMDSSLG 56

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
               A   F+ + +  LF Y  +I ++ + G    A+  F+++R  G+  + +T    L 
Sbjct: 57  DFNYANRIFNHIHHPSLFIYNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLK 116

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
           G   +  +  G  +H+  VKTG   D +V  +L+ MYA+ G ++    VF+    RD  S
Sbjct: 117 GIGCIGEVREGEKIHAFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVS 176

Query: 423 WNMMIGGYVKHGLGEKALEAF-RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           WN+MI GYV+    E+A++ + RM ++    P+E T V  LSAC+ +  +E GK+    I
Sbjct: 177 WNIMISGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYI 236

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
                +TP + +   ++D+  + G  + +   I +  +  N   W +++      G ++ 
Sbjct: 237 ANELDLTPIMGN--ALLDMYCKCGCVS-VAREIFDAMIVKNVNCWTSMVTGYVICGQLD- 292

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKK-EP 592
               A  L E  P    + V  + +     ++N F    AL     I+  EP
Sbjct: 293 ---QARYLFERSPS--RDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEP 339



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 117/245 (47%), Gaps = 5/245 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+ +F+  P  +VV W A++NGY +    +  + LF  M+    +  KF + T+L G
Sbjct: 291 LDQARYLFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTG 350

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A  G ++ G+ +H         +D  +S +L++MY+KCG  + +L++F  +KD D  +W
Sbjct: 351 CAQLGALEQGKWIHNYIDENRIKMDAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSW 410

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI-HAVIC 179
            +II  L   G   EA ++F  M+   +KP+     +++ A    G    G  + H++  
Sbjct: 411 TSIICGLAMNGKTSEALELFEAMQTCGLKPDDITFVAVLSACGHAGLVEEGRKLFHSMSS 470

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDS----VSWNALFSRFQDYESPD 235
            Y  E +       + +    G +     + + +  Q++      + AL S  + Y + D
Sbjct: 471 IYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKKLPDQNNEIIVPLYGALLSACRTYGNID 530

Query: 236 QGLRI 240
            G R+
Sbjct: 531 MGERL 535


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 169/483 (34%), Positives = 265/483 (54%), Gaps = 10/483 (2%)

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I  L ++G  ++A ++  L +ESS  P+Q     L+           G  +H  I   G
Sbjct: 52  LIQSLCKEGKLKQALRV--LSQESS--PSQQTYELLILCCGHRSSLSDGLRVHRHILDNG 107

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            + D  +   L+ MY + G V Y  +VF+    +    WNALF         ++ L +++
Sbjct: 108 SDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYW 167

Query: 243 QMLLKGFKPNMCTFIVILKAC----SSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           +M   G + +  T+  +LKAC     +   +  GK++HAH  +   + +  + T+LVDMY
Sbjct: 168 KMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMY 227

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS--NEFT 356
            + GC++ A   F+ +  +++ +++A+I  YA+ G+A  AL+ FR+M  E   S  N  T
Sbjct: 228 ARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVT 287

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
           + S L  C+ +A L  GRL+H   ++ G    + V +ALV MY +CG +D  + VF    
Sbjct: 288 MVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMH 347

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            RD  SWN +I  Y  HG G KA++ F  ML  G  P  +TFV VL ACSH GL+EEGK+
Sbjct: 348 DRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKR 407

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
            F S+ + +GI P ++H+ACM+D+LGRA +  E    + + +  P   VW +LLG+C  H
Sbjct: 408 LFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIH 467

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSW 596
           GN+EL E+ + +L  LEPK   NYV  +DI A    W++   V+ LL  +G++K P   W
Sbjct: 468 GNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCW 527

Query: 597 IEV 599
           +EV
Sbjct: 528 MEV 530



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/386 (27%), Positives = 176/386 (45%), Gaps = 8/386 (2%)

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
           G  VH   +  G   D FL+  L+ MYS  G  D A KVF + +   +  W A+   L  
Sbjct: 96  GLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTL 155

Query: 130 QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTE---TGDQRC-GESIHAVICKYGFES 185
            G  +E   ++  M    V+ ++F  T +++A      T D    G+ IHA + + G+ S
Sbjct: 156 AGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNS 215

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
              +   LV MY   G V Y S VF  +  ++ VSW+A+ + +       + LR F +M+
Sbjct: 216 HVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMM 275

Query: 246 --LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
              K   PN  T + +L+AC+SL+ +  G+ +H + ++  LD    V ++LV MY + G 
Sbjct: 276 TETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGK 335

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L+     FD + ++D+ ++ ++I+SY   G    A++ F +M   G      T  S L  
Sbjct: 336 LDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGA 395

Query: 364 CSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
           CS    +  G RL  S+    G    +     +V +  +   +D+A  + +         
Sbjct: 396 CSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPK 455

Query: 423 -WNMMIGGYVKHGLGEKALEAFRMML 447
            W  ++G    HG  E A  A R + 
Sbjct: 456 VWGSLLGSCRIHGNVELAERASRRLF 481



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 174/357 (48%), Gaps = 16/357 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A++VF    +  +  WNAL      +G G++V+ L+  M  +  +  +F+ + VLK 
Sbjct: 128 VDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKA 187

Query: 61  FANS----GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD 116
              S     ++  G+ +HA   R G     ++  +LVDMY++ G  D A  VF  +   +
Sbjct: 188 CVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRN 247

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFN-LMRESS-VKPNQFVLTSLVRATTETGDQRCGESI 174
           VV+W A+I C  + G   EA + F  +M E+    PN   + S+++A         G  I
Sbjct: 248 VVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLI 307

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H  I + G +S   V +ALV+MY   G++  G RVF+ +  +D VSWN+L S +  +   
Sbjct: 308 HGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYG 367

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL-----HAHTIKHSLDGNHV 289
            + ++IF +ML  G  P   TF+ +L ACS    V  GK+L       H IK  ++    
Sbjct: 368 RKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHY-- 425

Query: 290 VGTSLVDMYDKSGCLEDAG-VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM 345
               +VD+  ++  L++A  +  D         + +++ S    G  E+A +  R++
Sbjct: 426 --ACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRL 480


>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 614

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 158/468 (33%), Positives = 262/468 (55%), Gaps = 3/468 (0%)

Query: 136 AAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVS 195
           A  +F+ M   S+ P+ F       +           + H+++ K    SD    ++L++
Sbjct: 106 ALSLFHRMMSLSLTPDNFTFPFFFLSCANLASLSHACAAHSLLFKLALHSDPHTAHSLIT 165

Query: 196 MYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK-GFKPNMC 254
            Y   G V+   +VF+ I H+DSVSWN++ + +       + + +F +M  + GF+P+  
Sbjct: 166 AYARCGLVASARKVFDEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEM 225

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
           + + +L AC  L D+  G+ +    ++  +  N  +G++L+ MY K G LE A   FD +
Sbjct: 226 SLVSLLGACGELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGELESARRIFDGM 285

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
           A +D+  + A+I+ YAQ G A+ A+  F  M+ + + +N+ TL + L+ C+ +  L  G+
Sbjct: 286 AARDVITWNAVISGYAQNGMADEAILLFHGMKEDCVTANKITLTAVLSACATIGALDLGK 345

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
            +   A + G   D+FV+TAL+ MYAK GS+D+A+ VFK    ++ ASWN MI     HG
Sbjct: 346 QIDEYASQRGFQHDIFVATALIDMYAKSGSLDNAQRVFKDMPQKNEASWNAMISALAAHG 405

Query: 435 LGEKALEAFRMMLDE--GYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK 492
             ++AL  F+ M DE  G  P++ITFV +LSAC H GL++EG + F  +  ++G+ P I+
Sbjct: 406 KAKEALSLFQHMSDEGGGARPNDITFVGLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIE 465

Query: 493 HFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLEL 552
           H++CM+D+L RAG   E  + I +    P+ +    LLGAC    N+++ E+    +LE+
Sbjct: 466 HYSCMVDLLARAGHLYEAWDLIRKMPEKPDKVTLGALLGACRSKKNVDIGERVMRMILEV 525

Query: 553 EPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           +P    NY+  S I A    W D + +R L+  +GI K P CSWIEV+
Sbjct: 526 DPSNSGNYIISSKIYANLNMWEDSARMRLLMRQKGITKTPGCSWIEVE 573



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 145/273 (53%), Gaps = 5/273 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLKGFA 62
           A++VF  +P  + VSWN+++ GYA++G  ++ + +F  M   +  +  + SL ++L    
Sbjct: 176 ARKVFDEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACG 235

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
             G ++ G+ V    +  G  L+ ++  +L+ MY+KCG  ++A ++F  +   DV+ W A
Sbjct: 236 ELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGELESARRIFDGMAARDVITWNA 295

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I+   Q G   EA  +F+ M+E  V  N+  LT+++ A    G    G+ I     + G
Sbjct: 296 VISGYAQNGMADEAILLFHGMKEDCVTANKITLTAVLSACATIGALDLGKQIDEYASQRG 355

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F+ D  V  AL+ MY ++G +    RVF+ +  ++  SWNA+ S    +    + L +F 
Sbjct: 356 FQHDIFVATALIDMYAKSGSLDNAQRVFKDMPQKNEASWNAMISALAAHGKAKEALSLFQ 415

Query: 243 QMLLK--GFKPNMCTFIVILKAC--SSLSDVGF 271
            M  +  G +PN  TF+ +L AC  + L D G+
Sbjct: 416 HMSDEGGGARPNDITFVGLLSACVHAGLVDEGY 448



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 131/271 (48%), Gaps = 5/271 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+R+F  M   +V++WNA+++GYA++G   + + LF  MK+     +K +L+ VL  
Sbjct: 275 LESARRIFDGMAARDVITWNAVISGYAQNGMADEAILLFHGMKEDCVTANKITLTAVLSA 334

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A  G +  G+ +   A + G   D F++ +L+DMY+K G  DNA +VF  +   +  +W
Sbjct: 335 CATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKSGSLDNAQRVFKDMPQKNEASW 394

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRES--SVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            A+I+ L   G  +EA  +F  M +     +PN      L+ A    G    G  +  ++
Sbjct: 395 NAMISALAAHGKAKEALSLFQHMSDEGGGARPNDITFVGLLSACVHAGLVDEGYRLFDMM 454

Query: 179 CK-YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-DSVSWNALFSRFQDYESPDQ 236
              +G        + +V +    G +     +   +  + D V+  AL    +  ++ D 
Sbjct: 455 STLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIRKMPEKPDKVTLGALLGACRSKKNVDI 514

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLS 267
           G R+  +M+L+    N   +I+  K  ++L+
Sbjct: 515 GERVM-RMILEVDPSNSGNYIISSKIYANLN 544



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 74/140 (52%), Gaps = 1/140 (0%)

Query: 337 MALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALV 396
           +AL  F +M    +  + FT       C+ +A+L++    HS+  K     D   + +L+
Sbjct: 105 LALSLFHRMMSLSLTPDNFTFPFFFLSCANLASLSHACAAHSLLFKLALHSDPHTAHSLI 164

Query: 397 AMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM-LDEGYVPDE 455
             YA+CG +  A  VF     RD+ SWN MI GY K G   +A+E FR M   +G+ PDE
Sbjct: 165 TAYARCGLVASARKVFDEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDE 224

Query: 456 ITFVVVLSACSHMGLIEEGK 475
           ++ V +L AC  +G +E G+
Sbjct: 225 MSLVSLLGACGELGDLELGR 244


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 166/517 (32%), Positives = 269/517 (52%), Gaps = 35/517 (6%)

Query: 85  DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMR 144
           D F   +L+  Y+K G   N    F R+   D V++   I       C QE+ ++F  M+
Sbjct: 88  DIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQ 147

Query: 145 ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVS 204
               +P ++ + S++ A+ +  D R G+ IH  I    F  +  + NAL  MY + G + 
Sbjct: 148 REGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIE 207

Query: 205 YGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACS 264
               +F+ +  ++ VSWN + S +     P++ + + +QM L G  P+  T   I+ A  
Sbjct: 208 QARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAA-- 265

Query: 265 SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA 324
                                            Y + G +++A   F     KD+  +TA
Sbjct: 266 ---------------------------------YCQCGRVDEARRVFSEFKEKDIVCWTA 292

Query: 325 IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           ++  YA+ G  E AL  F +M LE I+ + +TL+S ++ C+ +A+L +G+ +H  ++  G
Sbjct: 293 MMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAG 352

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
              ++ VS+AL+ MY+KCG IDDA +VF     R+  SWN MI G  ++G  + ALE F 
Sbjct: 353 LNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFE 412

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA 504
            ML + + PD +TF+ +LSAC H   IE+G+++F SI   +G+TPT+ H+ACM+++LGR 
Sbjct: 413 NMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRT 472

Query: 505 GKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564
           G+  +    I      P+ L+W  LL  CS  G+I   E  A  L EL+P +   Y+  S
Sbjct: 473 GRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLS 532

Query: 565 DISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           ++ A+ GRW D + VR L+ S+ +KK    SWIE+D 
Sbjct: 533 NMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDN 569



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 116/441 (26%), Positives = 196/441 (44%), Gaps = 77/441 (17%)

Query: 156 TSLVRATTETGDQRCGESIHAVICKYGFE-SDTLVGNALVSMYMENGRVSYGSRVFEAIA 214
           T LV     T +    + + + +  + F+ +D+ + N L+ +Y + G++     +F+ + 
Sbjct: 26  TQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKML 85

Query: 215 HQDSVSWNALFS------------------RFQDYES-------------PDQGLRIFYQ 243
            +D  SWNAL S                   F+D  S             P + L +F +
Sbjct: 86  KRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKR 145

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +GF+P   T + IL A + LSD+ +GKQ+H   I  +  GN  +  +L DMY K G 
Sbjct: 146 MQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGE 205

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +E A   FD L  K+L ++  +I+ YA+ G+ E  +    +MRL                
Sbjct: 206 IEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRL---------------- 249

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
                              +GH+ D    + ++A Y +CG +D+A  VF     +D   W
Sbjct: 250 -------------------SGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCW 290

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK 482
             M+ GY K+G  E AL  F  ML E   PD  T   V+S+C+ +  +  G+  H  SI 
Sbjct: 291 TAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSI- 349

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
            + G+   +   + +ID+  + G F +    +     T N + W  ++  C+ +G+    
Sbjct: 350 -LAGLNNNLLVSSALIDMYSKCG-FIDDARSVFNLMPTRNVVSWNAMIVGCAQNGH---- 403

Query: 543 EKDAEKLLE--LEPKMESNYV 561
           +KDA +L E  L+ K + + V
Sbjct: 404 DKDALELFENMLQQKFKPDNV 424



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 188/413 (45%), Gaps = 36/413 (8%)

Query: 5   KRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANS 64
           K  F  MP  + VS+N  + G++ +   Q+ + LF  M+    + +++++ ++L   A  
Sbjct: 109 KATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQL 168

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
             ++ G+ +H   I      + F+  +L DMY+KCG  + A  +F  +   ++V+W  +I
Sbjct: 169 SDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMI 228

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
           +   + G  ++   + + MR S   P+Q  +++++ A                       
Sbjct: 229 SGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAA----------------------- 265

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
                       Y + GRV    RVF     +D V W A+   +      +  L +F +M
Sbjct: 266 ------------YCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEM 313

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
           LL+  +P+  T   ++ +C+ L+ +  G+ +H  +I   L+ N +V ++L+DMY K G +
Sbjct: 314 LLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFI 373

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
           +DA   F+ +  +++ ++ A+I   AQ G  + AL+ F  M  +  K +  T    L+ C
Sbjct: 374 DDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSAC 433

Query: 365 SPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
                +  G+    SI  + G    +     +V +  + G I+ A A+ K  A
Sbjct: 434 LHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMA 486



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 162/345 (46%), Gaps = 40/345 (11%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ +F  + + N+VSWN +++GYA++G  +K + L   M+                 
Sbjct: 206 IEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRL---------------- 249

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              SG++                 D+    +++  Y +CG  D A +VF   K+ D+V W
Sbjct: 250 ---SGHMP----------------DQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCW 290

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A++    + G  ++A  +FN M    ++P+ + L+S+V +  +      G+++H     
Sbjct: 291 TAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSIL 350

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G  ++ LV +AL+ MY + G +     VF  +  ++ VSWNA+             L +
Sbjct: 351 AGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALEL 410

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ-LHAHTIKHSLDGNHVVGTSLVDMYD 299
           F  ML + FKP+  TFI IL AC   + +  G++   + T +H +         +V++  
Sbjct: 411 FENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLG 470

Query: 300 KSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGE---AEMALK 340
           ++G +E A     ++A + D   ++ +++  +  G+   AE+A +
Sbjct: 471 RTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAAR 515


>gi|242041975|ref|XP_002468382.1| hypothetical protein SORBIDRAFT_01g044940 [Sorghum bicolor]
 gi|241922236|gb|EER95380.1| hypothetical protein SORBIDRAFT_01g044940 [Sorghum bicolor]
          Length = 1026

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 169/595 (28%), Positives = 319/595 (53%), Gaps = 3/595 (0%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           +F    E N + WN++++GY  + +    +  FC M+         ++  V+ G   +  
Sbjct: 399 LFCCFTEKNNILWNSMISGYLVNNEWNMALDAFCKMQIAGVAPDATTVINVISGCRYTKD 458

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +   + +HA A+R      + +  +L+ MY+ CG    +  +F +++   +++W  +I+ 
Sbjct: 459 LHVAKSIHAYAVRNRFESYQSVMNALLAMYADCGDISTSYTLFQKMEVRMLISWNTMISG 518

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             + G  + +  +F  M    V  +   L  L+ + + + D   GES+H++  K G  SD
Sbjct: 519 FAEIGDSETSLTLFCQMFHEEVWFDLVTLIGLISSLSVSEDAIVGESVHSLAIKSGCISD 578

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             + NAL++MY   G V  G ++F +   ++++++NAL S ++     ++ L +F QM+ 
Sbjct: 579 VSLTNALITMYANCGIVEAGQQLFNSFCSRNTITYNALMSGYRKNNVSEKILPLFTQMVK 638

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
              KPN+ T + +L  C S      GK +H++ +++       + TS + MY +   +E 
Sbjct: 639 NDEKPNLVTLLNLLPVCQSQLQ---GKCIHSYAVRNFTRLETPLFTSAMGMYSRFNNIEY 695

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
               F  ++ ++L  + A +++  Q  +A+M +  F+ M    ++ +E T+ + ++ CS 
Sbjct: 696 CRTIFSLVSARNLIVWNAFLSACVQCKQADMVVDYFKHMLFLNVRPDEVTMLALISACSQ 755

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           +        + ++ ++ G  +++ V  AL+  +++CGSI  A  +F  S  +D+ +W  M
Sbjct: 756 LGNADFAACIMAVILQKGFSMNILVLNALIDTHSRCGSISFARELFDSSVEKDSVTWGAM 815

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           I  Y  HG GE AL+ F MM+D G  PD+ITFV +LSACSH GL+E+G+  F S++  +G
Sbjct: 816 INAYSMHGNGEAALDLFSMMIDSGVDPDDITFVSILSACSHNGLVEQGRTLFKSLQADHG 875

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDA 546
           ITP ++H+ACM+D+LGR G   E  + +     TP+  + E+LLGAC +HGN ++ E   
Sbjct: 876 ITPRMEHYACMVDLLGRTGHLDEAYDIVRSMPFTPSDNLLESLLGACRFHGNYKIGESVG 935

Query: 547 EKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           + L++ E     +YV  S+I A+ G+W+D   +R  + ++G++K      +E  G
Sbjct: 936 KLLIKSEYGKSRSYVMLSNIYASAGKWSDCEQLRLDMEAKGLRKNVGVRKLESQG 990



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 139/539 (25%), Positives = 267/539 (49%), Gaps = 16/539 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +++++RVF  M   +++SWNA+++GY+ +G  ++ +     M+      +  +L  ++  
Sbjct: 190 IDVSRRVFDCMVLRDLISWNAMVSGYSVNGCFREAVETLQEMQQCGMSPNASTLVGIVGM 249

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             ++G   AG  +HA A++ G   D+ L+ +L+ MY+      ++  VF      D+V++
Sbjct: 250 CGSAGDRVAGDSLHAFALKGGTIDDESLTSALISMYAAFDDLSSSRLVFDLQPVKDLVSF 309

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTET--GDQRCGESIHAVI 178
            ++I+   Q    +EA ++F LM  + V PN   L S++ + ++   G    GES+H +I
Sbjct: 310 NSMISAYMQHSNWKEAFEVFRLMHCAGVGPNLITLVSVLPSCSDLLFGINH-GESVHGMI 368

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K G      V +ALVSMY + G++   S +F     ++++ WN++ S +      +  L
Sbjct: 369 IKLGLAEQVSVVSALVSMYSKLGKLDSSSLLFCCFTEKNNILWNSMISGYLVNNEWNMAL 428

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
             F +M + G  P+  T I ++  C    D+   K +HA+ +++  +    V  +L+ MY
Sbjct: 429 DAFCKMQIAGVAPDATTVINVISGCRYTKDLHVAKSIHAYAVRNRFESYQSVMNALLAMY 488

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
              G +  +   F  +  + L ++  +I+ +A+ G++E +L  F +M  E +  +  TL 
Sbjct: 489 ADCGDISTSYTLFQKMEVRMLISWNTMISGFAEIGDSETSLTLFCQMFHEEVWFDLVTLI 548

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
             ++  S       G  +HS+A+K+G + D+ ++ AL+ MYA CG ++  + +F     R
Sbjct: 549 GLISSLSVSEDAIVGESVHSLAIKSGCISDVSLTNALITMYANCGIVEAGQQLFNSFCSR 608

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK-KH 477
           +T ++N ++ GY K+ + EK L  F  M+     P+ +T + +L  C       +GK  H
Sbjct: 609 NTITYNALMSGYRKNNVSEKILPLFTQMVKNDEKPNLVTLLNLLPVCQSQ---LQGKCIH 665

Query: 478 FSSIKKIYGI-TPTIKHFACMIDILGRAGKFTEIENFITETKLTP--NALVWENLLGAC 533
             +++    + TP           +G   +F  IE   T   L    N +VW   L AC
Sbjct: 666 SYAVRNFTRLETPLFT------SAMGMYSRFNNIEYCRTIFSLVSARNLIVWNAFLSAC 718



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 125/452 (27%), Positives = 223/452 (49%), Gaps = 3/452 (0%)

Query: 16  VVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHA 75
           V S N ++  +++ G  ++++ L+  +         F+   V++    +  ++ G+ VH 
Sbjct: 106 VYSLNLVVRCFSDHGFHRELLDLYRGLCGFGSD--NFTFPPVIRACTAASCLQLGRQVHC 163

Query: 76  MAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQE 135
             +R G   +  +  +L+DMY+K G  D + +VF  +   D+++W A+++     GC +E
Sbjct: 164 RVLRTGHGSNVGVQTALLDMYAKAGQIDVSRRVFDCMVLRDLISWNAMVSGYSVNGCFRE 223

Query: 136 AAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVS 195
           A +    M++  + PN   L  +V      GD+  G+S+HA   K G   D  + +AL+S
Sbjct: 224 AVETLQEMQQCGMSPNASTLVGIVGMCGSAGDRVAGDSLHAFALKGGTIDDESLTSALIS 283

Query: 196 MYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCT 255
           MY     +S    VF+    +D VS+N++ S +  + +  +   +F  M   G  PN+ T
Sbjct: 284 MYAAFDDLSSSRLVFDLQPVKDLVSFNSMISAYMQHSNWKEAFEVFRLMHCAGVGPNLIT 343

Query: 256 FIVILKACSSLS-DVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
            + +L +CS L   +  G+ +H   IK  L     V ++LV MY K G L+ + + F   
Sbjct: 344 LVSVLPSCSDLLFGINHGESVHGMIIKLGLAEQVSVVSALVSMYSKLGKLDSSSLLFCCF 403

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
             K+   + ++I+ Y    E  MAL  F KM++ G+  +  T+ + ++GC     L   +
Sbjct: 404 TEKNNILWNSMISGYLVNNEWNMALDAFCKMQIAGVAPDATTVINVISGCRYTKDLHVAK 463

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
            +H+ AV+        V  AL+AMYA CG I  +  +F+   +R   SWN MI G+ + G
Sbjct: 464 SIHAYAVRNRFESYQSVMNALLAMYADCGDISTSYTLFQKMEVRMLISWNTMISGFAEIG 523

Query: 435 LGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
             E +L  F  M  E    D +T + ++S+ S
Sbjct: 524 DSETSLTLFCQMFHEEVWFDLVTLIGLISSLS 555



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 112/405 (27%), Positives = 189/405 (46%), Gaps = 7/405 (1%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF---YRIKDPDVVAWGAI 123
           +K  + +HA     G   D+F+   LV+ Y   G   +A  +F   YR + P V +   +
Sbjct: 54  LKCLREIHARLAVAGAIQDRFVVTGLVERYVSFGKPASAALLFAEAYRGR-PAVYSLNLV 112

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           + C    G  +E   ++  +       + F    ++RA T     + G  +H  + + G 
Sbjct: 113 VRCFSDHGFHRELLDLYRGL--CGFGSDNFTFPPVIRACTAASCLQLGRQVHCRVLRTGH 170

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            S+  V  AL+ MY + G++    RVF+ +  +D +SWNA+ S +       + +    +
Sbjct: 171 GSNVGVQTALLDMYAKAGQIDVSRRVFDCMVLRDLISWNAMVSGYSVNGCFREAVETLQE 230

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G  PN  T + I+  C S  D   G  LHA  +K     +  + ++L+ MY     
Sbjct: 231 MQQCGMSPNASTLVGIVGMCGSAGDRVAGDSLHAFALKGGTIDDESLTSALISMYAAFDD 290

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L  + + FD    KDL ++ ++I++Y Q    + A + FR M   G+  N  TL S L  
Sbjct: 291 LSSSRLVFDLQPVKDLVSFNSMISAYMQHSNWKEAFEVFRLMHCAGVGPNLITLVSVLPS 350

Query: 364 CSPVA-TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
           CS +   + +G  +H + +K G    + V +ALV+MY+K G +D +  +F     ++   
Sbjct: 351 CSDLLFGINHGESVHGMIIKLGLAEQVSVVSALVSMYSKLGKLDSSSLLFCCFTEKNNIL 410

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
           WN MI GY+ +     AL+AF  M   G  PD  T + V+S C +
Sbjct: 411 WNSMISGYLVNNEWNMALDAFCKMQIAGVAPDATTVINVISGCRY 455



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 107/377 (28%), Positives = 187/377 (49%), Gaps = 9/377 (2%)

Query: 134 QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNAL 193
           Q  AK F     +S   +  VLT L+R   +T   +C   IHA +   G   D  V   L
Sbjct: 23  QYGAKSFASSSPTSEIAHLKVLTVLLR---DTCSLKCLREIHARLAVAGAIQDRFVVTGL 79

Query: 194 VSMYMENGRVSYGSRVF-EAIAHQDSV-SWNALFSRFQDYESPDQGLRIFYQMLLKGFKP 251
           V  Y+  G+ +  + +F EA   + +V S N +   F D+    + L ++    L GF  
Sbjct: 80  VERYVSFGKPASAALLFAEAYRGRPAVYSLNLVVRCFSDHGFHRELLDLYRG--LCGFGS 137

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF 311
           +  TF  +++AC++ S +  G+Q+H   ++     N  V T+L+DMY K+G ++ +   F
Sbjct: 138 DNFTFPPVIRACTAASCLQLGRQVHCRVLRTGHGSNVGVQTALLDMYAKAGQIDVSRRVF 197

Query: 312 DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLA 371
           D +  +DL ++ A+++ Y+  G    A++  ++M+  G+  N  TL   +  C       
Sbjct: 198 DCMVLRDLISWNAMVSGYSVNGCFREAVETLQEMQQCGMSPNASTLVGIVGMCGSAGDRV 257

Query: 372 NGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV 431
            G  LH+ A+K G + D  +++AL++MYA    +  +  VF    ++D  S+N MI  Y+
Sbjct: 258 AGDSLHAFALKGGTIDDESLTSALISMYAAFDDLSSSRLVFDLQPVKDLVSFNSMISAYM 317

Query: 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL-IEEGKKHFSSIKKIYGITPT 490
           +H   ++A E FR+M   G  P+ IT V VL +CS +   I  G+     I K+ G+   
Sbjct: 318 QHSNWKEAFEVFRLMHCAGVGPNLITLVSVLPSCSDLLFGINHGESVHGMIIKL-GLAEQ 376

Query: 491 IKHFACMIDILGRAGKF 507
           +   + ++ +  + GK 
Sbjct: 377 VSVVSALVSMYSKLGKL 393


>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 596

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 163/500 (32%), Positives = 263/500 (52%), Gaps = 4/500 (0%)

Query: 105 ALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKI--FNLMRESSVKPNQFVLTSLVRAT 162
           A ++  +I+ P +  W +++     +           +  MR + V P++     L++A 
Sbjct: 55  ARRLLCQIQTPSIQLWDSLVGHFSGRVTLNRRLSFLSYRQMRRNGVVPSRHTFPPLLKAV 114

Query: 163 TETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWN 222
            +  D    +  HA I K+GF+SD  V N+L+S Y   G   +GSRVF+    +D VSW 
Sbjct: 115 FKLRDANPFQ-FHAHILKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWT 173

Query: 223 ALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKH 282
           A+   F   +S  + +  F +M   G   N  T + +LKA     DV FG+ +H   ++ 
Sbjct: 174 AMIDGFVRNDSSLEAMTYFVEMKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEA 233

Query: 283 -SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKC 341
             +  +  +G+SLVDMY K GC +DA   FD + ++++  +TA+I  Y Q    E  +  
Sbjct: 234 GRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFV 293

Query: 342 FRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAK 401
           F +M    +  NE TL+S L+ C+ V  L  GR +H   +K    ++  V T L+  YAK
Sbjct: 294 FEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEINTTVGTTLIDFYAK 353

Query: 402 CGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVV 461
           CG +++A  VF+    ++  +W  MI G+  HG    A++ F  ML     P+E+TF+VV
Sbjct: 354 CGCLEEAILVFERLREKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVTFIVV 413

Query: 462 LSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTP 521
           LSAC+H GL+EEG++ F S+K+ + + P   H+ACM+D+ GR G   E +  I    + P
Sbjct: 414 LSACAHGGLVEEGRRLFLSMKERFNLEPKADHYACMVDLFGRKGLLEEAKALIERMPMEP 473

Query: 522 NALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRA 581
              VW  L G+C  H + EL +  A ++++L+P     Y   +++ +    W+D + VR 
Sbjct: 474 TNAVWGALFGSCLIHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDDVARVRK 533

Query: 582 LLSSQGIKKEPSCSWIEVDG 601
            +  Q + K P CSWIEV G
Sbjct: 534 QMKDQQVVKSPGCSWIEVKG 553



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 121/442 (27%), Positives = 215/442 (48%), Gaps = 20/442 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKK---FSKFSLSTVLKG 60
           A+R+   +   ++  W++L+  ++      + +  F S + M +     S+ +   +LK 
Sbjct: 55  ARRLLCQIQTPSIQLWDSLVGHFSGRVTLNRRLS-FLSYRQMRRNGVVPSRHTFPPLLKA 113

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                     Q  HA  ++ G   D F+  SL+  YS CGL +   +VF   +D DVV+W
Sbjct: 114 VFKLRDANPFQF-HAHILKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSW 172

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    +     EA   F  M+ S V  N+  + S+++AT +  D R G SIH    +
Sbjct: 173 TAMIDGFVRNDSSLEAMTYFVEMKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLE 232

Query: 181 YG-FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
            G    D  +G++LV MY + G      +VF+ +  ++ V+W AL + +      ++G+ 
Sbjct: 233 AGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMF 292

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F +ML     PN  T   +L AC+ +  +  G+++H + IK+S++ N  VGT+L+D Y 
Sbjct: 293 VFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEINTTVGTTLIDFYA 352

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K GCLE+A + F+ L  K+++ +TA+I  +A  G A  A+  F  M    +  NE T   
Sbjct: 353 KCGCLEEAILVFERLREKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVTFIV 412

Query: 360 CLNGCSPVATLANGRLL-------HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
            L+ C+    +  GR L        ++  K  H         +V ++ + G +++A+A+ 
Sbjct: 413 VLSACAHGGLVEEGRRLFLSMKERFNLEPKADHY------ACMVDLFGRKGLLEEAKALI 466

Query: 413 KGSALRDT-ASWNMMIGGYVKH 433
           +   +  T A W  + G  + H
Sbjct: 467 ERMPMEPTNAVWGALFGSCLIH 488



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 152/309 (49%), Gaps = 2/309 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
            E   RVF    + +VVSW A+++G+  +    + M  F  MK      ++ ++ +VLK 
Sbjct: 154 FEFGSRVFDGTEDKDVVSWTAMIDGFVRNDSSLEAMTYFVEMKRSGVAANEMTVVSVLKA 213

Query: 61  FANSGYIKAGQVVHAMAIRLG-CALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
              +  ++ G+ +H   +  G    D F+  SLVDMY KCG  D+A KVF  +   +VV 
Sbjct: 214 TRKAEDVRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVT 273

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W A+I    Q  C ++   +F  M +S V PN+  L+S++ A    G    G  +H  + 
Sbjct: 274 WTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYVI 333

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K   E +T VG  L+  Y + G +     VFE +  ++  +W A+ + F  +      + 
Sbjct: 334 KNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNVYTWTAMINGFAAHGYAIGAVD 393

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLH-AHTIKHSLDGNHVVGTSLVDMY 298
           +F+ ML     PN  TFIV+L AC+    V  G++L  +   + +L+        +VD++
Sbjct: 394 LFHTMLSSHVSPNEVTFIVVLSACAHGGLVEEGRRLFLSMKERFNLEPKADHYACMVDLF 453

Query: 299 DKSGCLEDA 307
            + G LE+A
Sbjct: 454 GRKGLLEEA 462



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 3/130 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  VF+ + E NV +W A++NG+A  G     + LF +M       ++ +   VL  
Sbjct: 357 LEEAILVFERLREKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVTFIVVLSA 416

Query: 61  FANSGYIKAGQVVH-AMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            A+ G ++ G+ +  +M  R            +VD++ + GL + A  +  R+  +P   
Sbjct: 417 CAHGGLVEEGRRLFLSMKERFNLEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNA 476

Query: 119 AWGAII-TCL 127
            WGA+  +CL
Sbjct: 477 VWGALFGSCL 486


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 184/576 (31%), Positives = 290/576 (50%), Gaps = 36/576 (6%)

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDM--YSKCGLADNALKVFYRIKDPDVV 118
            +N   ++  + +H+  I+ G     F    L++    S  G    AL +F  I++P+ V
Sbjct: 35  LSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHV 94

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            W  +I  L        A + +  M  S  +PN++   S+ ++ T+      G+ +HA +
Sbjct: 95  IWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHV 154

Query: 179 CKYGFESDTLVGNALVSMYMENGRV-----------------------SYGSR------- 208
            K G E +  V  +L++MY +NG +                        Y S+       
Sbjct: 155 LKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEAR 214

Query: 209 -VFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACS-SL 266
            +F+ I  +D VSWNA+ S +      ++ +  F +M      PN+ T + +L AC+ S 
Sbjct: 215 ELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSG 274

Query: 267 SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
           S +  G  + +      L  N  +   L+DMY K G LE+A   F+ + +K++ ++  +I
Sbjct: 275 SSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMI 334

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL 386
             Y      + AL  FR+M    I  N+ T  S L  C+ +  L  G+ +H+   K    
Sbjct: 335 GGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKS 394

Query: 387 LDMFVS--TALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
           +   V+  T+L+ MYAKCG +  A+ +F     +  A+WN MI G+  HG  + AL  F 
Sbjct: 395 MKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFS 454

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA 504
            M  EG+VPD+ITFV VL+AC H GL+  G+++FSS+ + Y ++P + H+ CMID+ GRA
Sbjct: 455 RMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRA 514

Query: 505 GKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564
           G F E E  +   ++ P+  +W +LLGAC  H  IEL E  A+ L ELEP+  S YV  S
Sbjct: 515 GLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPSAYVLLS 574

Query: 565 DISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           +I A  GRW D + +R  L+   +KK P CS IEVD
Sbjct: 575 NIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVD 610



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 125/470 (26%), Positives = 212/470 (45%), Gaps = 46/470 (9%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A  +FK++   N V WN ++ G + S      +  +  M     + ++++  ++ K 
Sbjct: 78  LSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKS 137

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKC--------------------- 99
                    G+ VHA  ++LG   + F+  SL++MY++                      
Sbjct: 138 CTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSF 197

Query: 100 ----------GLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK 149
                     G  D A ++F  I   DVV+W A+I+   Q G  +EA   F  MR + V 
Sbjct: 198 TALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVT 257

Query: 150 PNQFVLTSLVRATTETGDQ-RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSR 208
           PN   + S++ A  ++G   + G  + + I   G  S+  + N L+ MY++ G +   S 
Sbjct: 258 PNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASN 317

Query: 209 VFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSD 268
           +FE I  ++ VSWN +   +       + L +F +M+     PN  TF+ IL AC++L  
Sbjct: 318 LFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGA 377

Query: 269 VGFGKQLHAHTIKH--SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
           +  GK +HA+  K+  S+     + TSL+DMY K G L  A   FD +  K L  + A+I
Sbjct: 378 LDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMI 437

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL 386
           + +A  G  + AL  F +M  EG   ++ T    L  C     L+ GR   S  ++    
Sbjct: 438 SGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQ---- 493

Query: 387 LDMFVSTAL------VAMYAKCGSIDDAEAVFKGSALR-DTASWNMMIGG 429
            D  VS  L      + ++ + G  D+AE + K   ++ D A W  ++G 
Sbjct: 494 -DYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGA 542



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 124/260 (47%), Gaps = 10/260 (3%)

Query: 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM--YDKSGCLEDAGVAFDSL 314
           + +L  C +L  +   KQ+H+  IK  L   H   + L++       G L  A   F ++
Sbjct: 32  LTLLSNCKTLQTL---KQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTI 88

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
            N +   +  +I   + +    +AL+ +  M   G + NE+T  S    C+ +     G+
Sbjct: 89  RNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGK 148

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
            +H+  +K G   + FV T+L+ MYA+ G + +A  VF  S++RD  S+  +I GY   G
Sbjct: 149 QVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKG 208

Query: 435 LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHF 494
             ++A E F    DE  V D +++  ++S  +  G +EE    F  +++   +TP +   
Sbjct: 209 FLDEARELF----DEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRA-KVTPNVSTM 263

Query: 495 ACMIDILGRAGKFTEIENFI 514
             ++    ++G   ++ N++
Sbjct: 264 LSVLSACAQSGSSLQLGNWV 283


>gi|302773067|ref|XP_002969951.1| hypothetical protein SELMODRAFT_92231 [Selaginella moellendorffii]
 gi|300162462|gb|EFJ29075.1| hypothetical protein SELMODRAFT_92231 [Selaginella moellendorffii]
          Length = 789

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 182/602 (30%), Positives = 307/602 (50%), Gaps = 12/602 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +   MP  N VSWNA++   A++GD  + +  F   + M +  S       L     
Sbjct: 66  AELLLDRMPRRNAVSWNAVIRANAQAGDFPRSLLFF---QRMLQDGSVPDAVVFLSLIKA 122

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G I+ G++V   A + G      +  +L+ MY +CG  D A   F RI++  VV+W A+
Sbjct: 123 PGTIQEGEIVQDFAKKSGFDRSFVVGTALIGMYGRCGRLDRAKDAFDRIQERGVVSWNAL 182

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ--RCGESIHAVICKY 181
           IT   +    +++ ++F  M    + PN   +  +  A      +   CG  IHA     
Sbjct: 183 ITVYSRGDEKEQSLRVFREMLLQGIAPNAVTIICIASAVAGIAAKITTCGNLIHACSIDS 242

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G  S T V N++++++   G +S  + +FE +  +D  SWN + + F       + L ++
Sbjct: 243 GLISVTTVANSIINLFGRGGNISRANEIFEKVDQRDVCSWNTMIAAFAKNGHVFEALDLY 302

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M ++   P+  TF+ +L+AC    D+  G+ +H     H  D + +V T+LV MY + 
Sbjct: 303 GRMTIR---PDGVTFVNVLEACDCPDDLERGESIHRDARAHGYDSDLIVATALVSMYRRC 359

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G L+ A   F ++ +  +    AII ++AQ G A+ +L  FR+M   GI+ ++FTL + L
Sbjct: 360 GRLDRAAEVFAAIQHPGVITLNAIIAAHAQFGRADGSLLHFRQMLQLGIRPSKFTLVAVL 419

Query: 362 NGCSPVATLANG-RLLHSIAVKTG---HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
             C+     A+  R LH    +        D+ V  ALV MYAKCG +D A  +F  +  
Sbjct: 420 GACATSGAAASAGRDLHRWMAECPGDCDPHDILVRNALVNMYAKCGDLDAARGIFDAAPQ 479

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
            + ++WN ++ GY +HG  + A+     M   G  PD I+F   LSA SH   +E+G + 
Sbjct: 480 GNVSTWNAIMAGYAQHGYADMAVRLLYEMQLAGISPDPISFTAALSASSHARQVEDGARI 539

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F +I + YG+ P+++H+  ++D+LGRAG   E E F+    +  +A  W  LLGAC  H 
Sbjct: 540 FYAISRDYGLIPSVEHYGAVVDLLGRAGWLEEAEGFLRSMAIAADAAAWMALLGACRIHK 599

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           + +   + AE ++ ++P   ++Y   S++ +  GRW++   +R  +   G +KEP  SWI
Sbjct: 600 DQDRAMRAAEAIVAIDPSHGASYTVLSNVYSAAGRWDEAEEIRRRMGENGARKEPGRSWI 659

Query: 598 EV 599
           EV
Sbjct: 660 EV 661



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 116/401 (28%), Positives = 190/401 (47%), Gaps = 8/401 (1%)

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           S  +  G+ +H   I  G     FLS  L+ MY++   + +A  +  R+   + V+W A+
Sbjct: 25  STSLDQGRKIHRRVIESGYGDHLFLSNHLLHMYARLESSRDAELLLDRMPRRNAVSWNAV 84

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q G    +   F  M +    P+  V  SL++A    G  + GE +     K GF
Sbjct: 85  IRANAQAGDFPRSLLFFQRMLQDGSVPDAVVFLSLIKA---PGTIQEGEIVQDFAKKSGF 141

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           +   +VG AL+ MY   GR+      F+ I  +  VSWNAL + +   +  +Q LR+F +
Sbjct: 142 DRSFVVGTALIGMYGRCGRLDRAKDAFDRIQERGVVSWNALITVYSRGDEKEQSLRVFRE 201

Query: 244 MLLKGFKPNMCTFIVILKACSSLSD--VGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
           MLL+G  PN  T I I  A + ++      G  +HA +I   L     V  S+++++ + 
Sbjct: 202 MLLQGIAPNAVTIICIASAVAGIAAKITTCGNLIHACSIDSGLISVTTVANSIINLFGRG 261

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G +  A   F+ +  +D+ ++  +I ++A+ G    AL  + +M    I+ +  T  + L
Sbjct: 262 GNISRANEIFEKVDQRDVCSWNTMIAAFAKNGHVFEALDLYGRM---TIRPDGVTFVNVL 318

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
             C     L  G  +H  A   G+  D+ V+TALV+MY +CG +D A  VF         
Sbjct: 319 EACDCPDDLERGESIHRDARAHGYDSDLIVATALVSMYRRCGRLDRAAEVFAAIQHPGVI 378

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVL 462
           + N +I  + + G  + +L  FR ML  G  P + T V VL
Sbjct: 379 TLNAIIAAHAQFGRADGSLLHFRQMLQLGIRPSKFTLVAVL 419



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 110/421 (26%), Positives = 206/421 (48%), Gaps = 12/421 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM---KDMEKKFSKFSLSTV 57
           ++ AK  F  + E  VVSWNAL+  Y+   + ++ + +F  M          +   +++ 
Sbjct: 161 LDRAKDAFDRIQERGVVSWNALITVYSRGDEKEQSLRVFREMLLQGIAPNAVTIICIASA 220

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
           + G A +     G ++HA +I  G      ++ S+++++ + G    A ++F ++   DV
Sbjct: 221 VAGIA-AKITTCGNLIHACSIDSGLISVTTVANSIINLFGRGGNISRANEIFEKVDQRDV 279

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
            +W  +I    + G   EA  ++  M   +++P+     +++ A     D   GESIH  
Sbjct: 280 CSWNTMIAAFAKNGHVFEALDLYGRM---TIRPDGVTFVNVLEACDCPDDLERGESIHRD 336

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
              +G++SD +V  ALVSMY   GR+   + VF AI H   ++ NA+ +    +   D  
Sbjct: 337 ARAHGYDSDLIVATALVSMYRRCGRLDRAAEVFAAIQHPGVITLNAIIAAHAQFGRADGS 396

Query: 238 LRIFYQMLLKGFKPNMCTFIVIL-KACSSLSDVGFGKQLHAHTIKHSLDGNH---VVGTS 293
           L  F QML  G +P+  T + +L    +S +    G+ LH    +   D +    +V  +
Sbjct: 397 LLHFRQMLQLGIRPSKFTLVAVLGACATSGAAASAGRDLHRWMAECPGDCDPHDILVRNA 456

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           LV+MY K G L+ A   FD+    ++  + AI+  YAQ G A+MA++   +M+L GI  +
Sbjct: 457 LVNMYAKCGDLDAARGIFDAAPQGNVSTWNAIMAGYAQHGYADMAVRLLYEMQLAGISPD 516

Query: 354 EFTLASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
             +  + L+  S    + +G R+ ++I+   G +  +    A+V +  + G +++AE   
Sbjct: 517 PISFTAALSASSHARQVEDGARIFYAISRDYGLIPSVEHYGAVVDLLGRAGWLEEAEGFL 576

Query: 413 K 413
           +
Sbjct: 577 R 577



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 168/337 (49%), Gaps = 15/337 (4%)

Query: 146 SSVKPNQFVLTS---LVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGR 202
           SSV P    + S   L R   E+     G  IH  + + G+     + N L+ MY     
Sbjct: 3   SSVLPPAAPVDSWRDLARLVDESTSLDQGRKIHRRVIESGYGDHLFLSNHLLHMYARLES 62

Query: 203 VSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKA 262
                 + + +  +++VSWNA+           + L  F +ML  G  P+   F+ ++KA
Sbjct: 63  SRDAELLLDRMPRRNAVSWNAVIRANAQAGDFPRSLLFFQRMLQDGSVPDAVVFLSLIKA 122

Query: 263 CSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAY 322
             ++ +   G+ +     K   D + VVGT+L+ MY + G L+ A  AFD +  + + ++
Sbjct: 123 PGTIQE---GEIVQDFAKKSGFDRSFVVGTALIGMYGRCGRLDRAKDAFDRIQERGVVSW 179

Query: 323 TAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT---LASCLNGCSPVATLANGRLLHSI 379
            A+IT Y++  E E +L+ FR+M L+GI  N  T   +AS + G +   T   G L+H+ 
Sbjct: 180 NALITVYSRGDEKEQSLRVFREMLLQGIAPNAVTIICIASAVAGIAAKITTC-GNLIHAC 238

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
           ++ +G +    V+ +++ ++ + G+I  A  +F+    RD  SWN MI  + K+G   +A
Sbjct: 239 SIDSGLISVTTVANSIINLFGRGGNISRANEIFEKVDQRDVCSWNTMIAAFAKNGHVFEA 298

Query: 440 LEAF-RMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           L+ + RM +     PD +TFV VL AC     +E G+
Sbjct: 299 LDLYGRMTIR----PDGVTFVNVLEACDCPDDLERGE 331



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 14/180 (7%)

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
           +L  GR +H   +++G+   +F+S  L+ MYA+  S  DAE +      R+  SWN +I 
Sbjct: 27  SLDQGRKIHRRVIESGYGDHLFLSNHLLHMYARLESSRDAELLLDRMPRRNAVSWNAVIR 86

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGIT 488
              + G   ++L  F+ ML +G VPD + F+ ++ A    G I+EG+       K  G  
Sbjct: 87  ANAQAGDFPRSLLFFQRMLQDGSVPDAVVFLSLIKA---PGTIQEGEI-VQDFAKKSGFD 142

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEK 548
            +      +I + GR G+    ++     +            G  SW+  I +  +  EK
Sbjct: 143 RSFVVGTALIGMYGRCGRLDRAKDAFDRIQER----------GVVSWNALITVYSRGDEK 192


>gi|193848497|gb|ACF22688.1| vegetative storage protein [Brachypodium distachyon]
          Length = 587

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 172/533 (32%), Positives = 285/533 (53%), Gaps = 3/533 (0%)

Query: 70  GQVVHAMAIRLGCAL-DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLD 128
           G+ +HA+AIR   A  D F++ +LV MY+KC     ++  +    +PD+V   +++T  +
Sbjct: 8   GRALHALAIRSCTAYTDAFVAAALVHMYAKCRGMVGSINAYNAFSEPDMVLRTSMVTGYE 67

Query: 129 QQGCCQEAAKIFNL-MRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDT 187
           Q     EA + F+  +      P+   L S++ A  +  D   G++ HA + +  FE D 
Sbjct: 68  QNRMAAEALEFFSRHVVGQGFMPSPVTLVSVISAAAQLKDVLNGQACHAFVIRNNFEYDL 127

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK 247
           ++ NA++  YM  G V    R+FE +  +D V+W+ + + +       + L  + +M+  
Sbjct: 128 VLVNAILGFYMRIGAVQAARRLFEGMTEKDVVTWSCMVTGYVQSGDICEALTAYKKMVEA 187

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           G KPN  T + +++ACS   D+  G+++H   +K   +    V T+LVDMY K  C E+A
Sbjct: 188 GIKPNAVTVVSVVQACSLAPDIEEGRRVHDIAVKIGCELEMTVATALVDMYMKCSCHEEA 247

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367
              F  ++ KD  A+  +I+ + Q G  + +++ F+ M   G   +  T+   L  CS  
Sbjct: 248 MQLFCRMSKKDAVAWAVVISGFTQNGLPDESMRVFKCMLFGGPFPDAVTMVKVLAACSES 307

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
             +     LH   V TG    +FV+ ALV +Y+KCG++  A  VF+ +  +D   W+ MI
Sbjct: 308 GVMRQAFCLHGYLVITGFCDKIFVAAALVDLYSKCGNLGCAVRVFESAMEKDVVLWSSMI 367

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGI 487
            GY  HGLG++A+E F+MM+     P+ +TFV VLSACSH GL++EGK+ F S+ ++YG+
Sbjct: 368 SGYGVHGLGQQAVELFQMMVASSVKPNSLTFVSVLSACSHSGLVQEGKRIFESMTQVYGV 427

Query: 488 TPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAE 547
            P   H + M+D+LGRAG+  E    +       +A  W  LL AC  H + E+ E  A 
Sbjct: 428 VPNAVHHSAMVDLLGRAGELQEAAKLLHGNG-RADAHTWCALLAACRAHHDTEMSEVVAA 486

Query: 548 KLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           KLL+L+P     Y   ++I      W+     R ++  +G+ K P CS +E++
Sbjct: 487 KLLKLDPDHAGYYNLLNNIYTFDENWSSAKENRNIIRDRGLNKVPGCSAVELN 539



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/432 (26%), Positives = 201/432 (46%), Gaps = 10/432 (2%)

Query: 8   FKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKF--SKFSLSTVLKGFANSG 65
           + +  E ++V   +++ GY ++    + +  F S   + + F  S  +L +V+   A   
Sbjct: 48  YNAFSEPDMVLRTSMVTGYEQNRMAAEALEFF-SRHVVGQGFMPSPVTLVSVISAAAQLK 106

Query: 66  YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT 125
            +  GQ  HA  IR     D  L  +++  Y + G    A ++F  + + DVV W  ++T
Sbjct: 107 DVLNGQACHAFVIRNNFEYDLVLVNAILGFYMRIGAVQAARRLFEGMTEKDVVTWSCMVT 166

Query: 126 CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
              Q G   EA   +  M E+ +KPN   + S+V+A +   D   G  +H +  K G E 
Sbjct: 167 GYVQSGDICEALTAYKKMVEAGIKPNAVTVVSVVQACSLAPDIEEGRRVHDIAVKIGCEL 226

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           +  V  ALV MYM+        ++F  ++ +D+V+W  + S F     PD+ +R+F  ML
Sbjct: 227 EMTVATALVDMYMKCSCHEEAMQLFCRMSKKDAVAWAVVISGFTQNGLPDESMRVFKCML 286

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQ---LHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
             G  P+  T + +L AC   S+ G  +Q   LH + +         V  +LVD+Y K G
Sbjct: 287 FGGPFPDAVTMVKVLAAC---SESGVMRQAFCLHGYLVITGFCDKIFVAAALVDLYSKCG 343

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            L  A   F+S   KD+  ++++I+ Y   G  + A++ F+ M    +K N  T  S L+
Sbjct: 344 NLGCAVRVFESAMEKDVVLWSSMISGYGVHGLGQQAVELFQMMVASSVKPNSLTFVSVLS 403

Query: 363 GCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
            CS    +  G R+  S+    G + +    +A+V +  + G + +A  +  G+   D  
Sbjct: 404 ACSHSGLVQEGKRIFESMTQVYGVVPNAVHHSAMVDLLGRAGELQEAAKLLHGNGRADAH 463

Query: 422 SWNMMIGGYVKH 433
           +W  ++     H
Sbjct: 464 TWCALLAACRAH 475



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 178/339 (52%), Gaps = 1/339 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+R+F+ M E +VV+W+ ++ GY +SGD  + +  +  M +   K +  ++ +V++ 
Sbjct: 143 VQAARRLFEGMTEKDVVTWSCMVTGYVQSGDICEALTAYKKMVEAGIKPNAVTVVSVVQA 202

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            + +  I+ G+ VH +A+++GC L+  ++ +LVDMY KC   + A+++F R+   D VAW
Sbjct: 203 CSLAPDIEEGRRVHDIAVKIGCELEMTVATALVDMYMKCSCHEEAMQLFCRMSKKDAVAW 262

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I+   Q G   E+ ++F  M      P+   +  ++ A +E+G  R    +H  +  
Sbjct: 263 AVVISGFTQNGLPDESMRVFKCMLFGGPFPDAVTMVKVLAACSESGVMRQAFCLHGYLVI 322

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GF     V  ALV +Y + G +    RVFE+   +D V W+++ S +  +    Q + +
Sbjct: 323 TGFCDKIFVAAALVDLYSKCGNLGCAVRVFESAMEKDVVLWSSMISGYGVHGLGQQAVEL 382

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL-HAHTIKHSLDGNHVVGTSLVDMYD 299
           F  M+    KPN  TF+ +L ACS    V  GK++  + T  + +  N V  +++VD+  
Sbjct: 383 FQMMVASSVKPNSLTFVSVLSACSHSGLVQEGKRIFESMTQVYGVVPNAVHHSAMVDLLG 442

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMA 338
           ++G L++A          D   + A++ +     + EM+
Sbjct: 443 RAGELQEAAKLLHGNGRADAHTWCALLAACRAHHDTEMS 481



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 62/108 (57%), Gaps = 2/108 (1%)

Query: 370 LANGRLLHSIAVKT-GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
           LA+GR LH++A+++     D FV+ ALV MYAKC  +  +   +   +  D      M+ 
Sbjct: 5   LAHGRALHALAIRSCTAYTDAFVAAALVHMYAKCRGMVGSINAYNAFSEPDMVLRTSMVT 64

Query: 429 GYVKHGLGEKALEAF-RMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           GY ++ +  +ALE F R ++ +G++P  +T V V+SA + +  +  G+
Sbjct: 65  GYEQNRMAAEALEFFSRHVVGQGFMPSPVTLVSVISAAAQLKDVLNGQ 112


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 181/598 (30%), Positives = 307/598 (51%), Gaps = 3/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F S+P+ ++  +N L+ G++ S D   +      +K+       F+ +  +    +
Sbjct: 59  ARALFFSVPKPDIFLFNVLIKGFSFSPDASSISFYTHLLKNTTLSPDNFTYAFAISASPD 118

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G  +HA A+  G   + F++ +LVD+Y K      A KVF ++ D D V W  +
Sbjct: 119 DNL---GMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTM 175

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           IT L +  C  ++ ++F  M    V+ +   + +++ A  E  + + G  I  +  K GF
Sbjct: 176 ITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGF 235

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D  V   L+S++ +   V     +F  I   D VS+NAL S F      +  ++ F +
Sbjct: 236 HFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRE 295

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           +L+ G + +  T + ++   S    +     +    +K        V T+L  +Y +   
Sbjct: 296 LLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNE 355

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++ A   FD  + K + A+ A+I+ YAQ+G  EMA+  F++M       N  T+ S L+ 
Sbjct: 356 IDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSA 415

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +  L+ G+ +H +        +++VSTAL+ MYAKCG+I +A  +F  ++ ++T +W
Sbjct: 416 CAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTW 475

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N MI GY  HG G++AL+ F  ML  G+ P  +TF+ VL ACSH GL+ EG + F ++  
Sbjct: 476 NTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVN 535

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            Y I P  +H+ACM+DILGRAG+  +   FI +  + P   VW  LLGAC  H +  L  
Sbjct: 536 KYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLAR 595

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
             +E+L EL+P     YV  S+I + +  +   + VR  +  + + K P C+ IEV+G
Sbjct: 596 VASERLFELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVNG 653



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 160/308 (51%), Gaps = 1/308 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+ +F  + + ++VS+NAL++G++ +G+ +  +  F  +    ++ S  ++  ++  
Sbjct: 255 VDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPV 314

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +  G++     +    ++ G  L   +S +L  +YS+    D A ++F    +  V AW
Sbjct: 315 SSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAW 374

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I+   Q G  + A  +F  M  +   PN   +TS++ A  + G    G+S+H +I  
Sbjct: 375 NAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKS 434

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              E +  V  AL+ MY + G +S  S++F+  + +++V+WN +   +  +   D+ L++
Sbjct: 435 KNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKL 494

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL-HAHTIKHSLDGNHVVGTSLVDMYD 299
           F +ML  GF+P+  TF+ +L ACS    V  G ++ HA   K+ ++        +VD+  
Sbjct: 495 FNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILG 554

Query: 300 KSGCLEDA 307
           ++G LE A
Sbjct: 555 RAGQLEKA 562



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 136/297 (45%), Gaps = 7/297 (2%)

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           HA + + G++ D      L     + G   +   +F ++   D   +N L   F    SP
Sbjct: 28  HAQLIRNGYQHDLATVTKLTQKLFDVGATRHARALFFSVPKPDIFLFNVLIKGFS--FSP 85

Query: 235 DQGLRIFYQMLLKG--FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
           D     FY  LLK     P+  T+     A S+  D   G  LHAH +    D N  V +
Sbjct: 86  DASSISFYTHLLKNTTLSPDNFTYAF---AISASPDDNLGMCLHAHAVVDGFDSNLFVAS 142

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           +LVD+Y K   +  A   FD + ++D   +  +IT   +    + +++ F+ M  +G++ 
Sbjct: 143 ALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRL 202

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
           +  T+A+ L   + +  +  G  +  +A+K G   D +V T L+++++KC  +D A  +F
Sbjct: 203 DSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLF 262

Query: 413 KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
                 D  S+N +I G+  +G  E A++ FR +L  G      T V ++   S  G
Sbjct: 263 GMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFG 319



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 3/201 (1%)

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
           + HA  I++    +    T L       G    A   F S+   D+F +  +I  ++ + 
Sbjct: 26  ETHAQLIRNGYQHDLATVTKLTQKLFDVGATRHARALFFSVPKPDIFLFNVLIKGFSFSP 85

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST 393
           +A         ++   +  + FT A  ++  SP   L  G  LH+ AV  G   ++FV++
Sbjct: 86  DASSISFYTHLLKNTTLSPDNFTYAFAISA-SPDDNL--GMCLHAHAVVDGFDSNLFVAS 142

Query: 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP 453
           ALV +Y K   +  A  VF     RDT  WN MI G V++   + +++ F+ M+ +G   
Sbjct: 143 ALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRL 202

Query: 454 DEITFVVVLSACSHMGLIEEG 474
           D  T   VL A + M  ++ G
Sbjct: 203 DSTTVATVLPAVAEMQEVKVG 223


>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
 gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
          Length = 792

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 179/600 (29%), Positives = 310/600 (51%), Gaps = 7/600 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A++VF  +   + VSW ++++ YA +G   + + L+  M     +    + ++ L  
Sbjct: 197 VEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSITFTSALLA 256

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 +  G+ +HA  +      D F+  +L++MY++CG   +A + F +I++  VV W
Sbjct: 257 CTK---LVDGKAIHARIVSSNMESD-FVGSALINMYARCGDVSSARQAFEKIQNKHVVCW 312

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +++T   Q    +EA  ++  M    V  +     + + A    G  + G++IH+ + +
Sbjct: 313 TSLMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHSRVFE 372

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSV-SWNALFSRFQDYESPDQGLR 239
            GF+S  +V  AL++MY + G +     VF  +  + +V  W A+ S +       + L 
Sbjct: 373 CGFQS-LVVHTALLTMYAKCGELDAARAVFNRVRQKRNVYCWTAMISAYAQAGHTQEALE 431

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           ++ QM+ +G +PN  TF  +L ACSS  D+  G ++H H     L  N  V  +LV MY 
Sbjct: 432 LYDQMVAEGTRPNEYTFSNVLAACSSSGDLEAGMKIHGHVENSELASNVAVQNALVTMYA 491

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G LE A  AF++   KDL ++ A+I +YAQ G    AL  ++ M  +G+  +E T+AS
Sbjct: 492 KCGSLELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIAS 551

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLD-MFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
            L+ C+   +L  GR +HS  +K       + V TALV MY +CG ++ A ++F+    R
Sbjct: 552 SLSACAISGSLQLGREIHSRVLKNQSFRSSLMVQTALVNMYGRCGRLETARSMFEDMGQR 611

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D  SW  M   Y + G  ++ L+ +  M+  G  P+EITF  +L  CSH GL+  G + F
Sbjct: 612 DVLSWTAMTSAYAQQGHADQVLDLYLEMVLHGIRPNEITFTSILVGCSHAGLLARGVECF 671

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
             ++  + + P  +HF CM+D+LGR+G+  + E  +      P+++ W  +LG+C  H +
Sbjct: 672 LEMQSEHEVVPIREHFLCMVDLLGRSGRLRDAEALVESMPYQPDSVAWLTVLGSCKTHSD 731

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
            +  ++ A ++ EL+P+  S Y   S I    G   +   V+  +   G+KK P  S IE
Sbjct: 732 ADTAKRAARRVKELDPENTSLYSLLSSIFTAAGLPQEALEVQLSMKEMGLKKPPGQSLIE 791



 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 174/573 (30%), Positives = 303/573 (52%), Gaps = 17/573 (2%)

Query: 1   MELAKRVFKSMPELNVVS-WNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           + LA+  F++   +  V+ +N +L+ Y ++G   + + L+  M +   +  K +   VL 
Sbjct: 93  IHLARAAFQNFASIKAVACYNQMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIVLG 152

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSC--SLVDMYSKCGLADNALKVFYRIKDPDV 117
             +  G ++  + +HA  I     +   LS   +LV+MY KCG  + A KVF  IK+ D 
Sbjct: 153 SCSAVGSLREAREIHASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDA 212

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           V+W ++I+     G C EA  ++  M    ++P+    TS + A T+  D   G++IHA 
Sbjct: 213 VSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSITFTSALLACTKLVD---GKAIHAR 269

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
           I     ESD  VG+AL++MY   G VS   + FE I ++  V W +L + +       + 
Sbjct: 270 IVSSNMESD-FVGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYREA 328

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           L ++ +M  +G   +  T++  L AC+SL  +  GK +H+   +     + VV T+L+ M
Sbjct: 329 LDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHSRVFECGFQ-SLVVHTALLTM 387

Query: 298 YDKSGCLEDAGVAFDSLANK-DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           Y K G L+ A   F+ +  K +++ +TA+I++YAQAG  + AL+ + +M  EG + NE+T
Sbjct: 388 YAKCGELDAARAVFNRVRQKRNVYCWTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYT 447

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
            ++ L  CS    L  G  +H     +    ++ V  ALV MYAKCGS++ A++ F+ S 
Sbjct: 448 FSNVLAACSSSGDLEAGMKIHGHVENSELASNVAVQNALVTMYAKCGSLELAKSAFEASG 507

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            +D  SWN MIG Y +HGLG +AL+ ++ M  +G +PDE+T    LSAC+  G ++ G++
Sbjct: 508 RKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGRE 567

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
             S + K      ++     ++++ GR G+  E    + E     + L W  +  A +  
Sbjct: 568 IHSRVLKNQSFRSSLMVQTALVNMYGRCGRL-ETARSMFEDMGQRDVLSWTAMTSAYAQQ 626

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDISAT 569
           G+       A+++L+L  +M  + + P++I+ T
Sbjct: 627 GH-------ADQVLDLYLEMVLHGIRPNEITFT 652



 Score =  221 bits (563), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 146/509 (28%), Positives = 253/509 (49%), Gaps = 22/509 (4%)

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCG---LADNALKVFYRIKDPDVVAWG 121
           G +  G++VH   +R G   ++FL   L+ MY  CG   LA  A + F  IK   V  + 
Sbjct: 56  GSLAEGKLVHRHLLRTGHGRNQFLGNLLIQMYGNCGEIHLARAAFQNFASIK--AVACYN 113

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            +++   + G    A ++++ M E   +P++     ++ + +  G  R    IHA I + 
Sbjct: 114 QMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLREAREIHASIIEA 173

Query: 182 G--FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
                 +  + NALV+MY + G V    +VF+ I ++D+VSW ++ S + +    D+ L 
Sbjct: 174 PQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALD 233

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           ++ QM   G +P+  TF   L AC+ L D   GK +HA  +  +++ +  VG++L++MY 
Sbjct: 234 LYQQMDADGIQPDSITFTSALLACTKLVD---GKAIHARIVSSNMESD-FVGSALINMYA 289

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           + G +  A  AF+ + NK +  +T+++T+Y Q      AL  + +M  EG+ ++  T  +
Sbjct: 290 RCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVT 349

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF-KGSALR 418
            L  C+ +  L  G+ +HS   + G    + V TAL+ MYAKCG +D A AVF +    R
Sbjct: 350 ALGACASLGALKEGKAIHSRVFECG-FQSLVVHTALLTMYAKCGELDAARAVFNRVRQKR 408

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           +   W  MI  Y + G  ++ALE +  M+ EG  P+E TF  VL+ACS  G +E G K  
Sbjct: 409 NVYCWTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSSSGDLEAGMKIH 468

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
             ++    +   +     ++ +  + G   E+     E     + + W  ++GA + HG 
Sbjct: 469 GHVEN-SELASNVAVQNALVTMYAKCGSL-ELAKSAFEASGRKDLVSWNAMIGAYAQHGL 526

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDIS 567
                    + L+L   M S  V P +++
Sbjct: 527 -------GREALDLYQTMTSQGVLPDEVT 548



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 112/213 (52%), Gaps = 3/213 (1%)

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN-K 317
           +L+ C  L  +  GK +H H ++     N  +G  L+ MY   G +  A  AF + A+ K
Sbjct: 48  LLQQCGRLGSLAEGKLVHRHLLRTGHGRNQFLGNLLIQMYGNCGEIHLARAAFQNFASIK 107

Query: 318 DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLH 377
            +  Y  ++++Y + G    AL+ + +M  EG + ++ T    L  CS V +L   R +H
Sbjct: 108 AVACYNQMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLREAREIH 167

Query: 378 SIAVKTGHLL--DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           +  ++   ++  ++ +  ALV MY KCGS+++A  VF G   RD  SW  MI  Y  +G 
Sbjct: 168 ASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGF 227

Query: 436 GEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
            ++AL+ ++ M  +G  PD ITF   L AC+ +
Sbjct: 228 CDEALDLYQQMDADGIQPDSITFTSALLACTKL 260


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 204/630 (32%), Positives = 333/630 (52%), Gaps = 46/630 (7%)

Query: 12  PEL-NVVSWNALLNGYAESGDGQKVMHLFCSMKDM--EKKFSKFSLSTVL---KGFANSG 65
           P+L + VS+N+L++        ++  H   +++DM  + + S F+L +VL      A+ G
Sbjct: 113 PDLRDAVSYNSLISALCLF---RRWGHALDALRDMLADHEVSSFTLVSVLLACSHLADQG 169

Query: 66  YIKAGQVVHAMAIRLGCALDK----FLSCSLVDMYSKCGLADNALKVFYRIKDP--DVVA 119
           + + G+  HA A++ G  LDK    F   +L+ MY++ GL D+A ++F+       D+V 
Sbjct: 170 H-RLGREAHAFALKHGF-LDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVT 227

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  +I+ L Q G C+EA ++   M    V+P+     S + A +       G  +HA + 
Sbjct: 228 WNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVL 287

Query: 180 KYG-FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSV--SWNALFSRFQDYESPDQ 236
           K     +++ V +ALV MY  N +VS+  RVF+ +         WNA+   +  +   D+
Sbjct: 288 KDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDE 347

Query: 237 -GLRIFYQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQ-LHAHTIKHSLDGNHVVGTS 293
             + +F +M  + G  P+  T   +L AC+  S+V  GK+ +H + +K  +  N  V  +
Sbjct: 348 EAIELFSRMEAEAGCAPSETTMAGVLPACAR-SEVFTGKEAVHGYVVKRDMASNRFVQNA 406

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL------ 347
           L+DMY + G +++A   F  +  +D+ ++  +IT     G    A +  R+M+L      
Sbjct: 407 LMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAAS 466

Query: 348 -----EGIKS---------NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST 393
                EG  +         N  TL + L GC+ +A  A G+ +H  AV+     D+ V +
Sbjct: 467 GETMLEGDDTSVDGQRCMPNNITLMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAVGS 526

Query: 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF-RMMLDEGYV 452
           ALV MYAKCG +  A AVF     R+  +WN++I  Y  HGLG++AL  F RM+ +    
Sbjct: 527 ALVDMYAKCGCLALARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEAT 586

Query: 453 PDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIEN 512
           P+E+TF+  L+ACSH GL++ G + F  +K+ YG  PT    AC++D+LGRAG+  E   
Sbjct: 587 PNEVTFIAALAACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVLGRAGRLDEAYG 646

Query: 513 FITETKLTPNAL-VWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQG 571
            I+      + +  W  +LGAC  H N++L    AE+L ELEP   S+YV   +I +  G
Sbjct: 647 IISSMAPGEHQVSAWSTMLGACRLHRNVKLGRIAAERLFELEPDEASHYVLLCNIYSAAG 706

Query: 572 RWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
            W + + VR ++  +G+ KEP CSWIE+DG
Sbjct: 707 LWENSTEVRGMMRQRGVAKEPGCSWIELDG 736



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 122/296 (41%), Gaps = 30/296 (10%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNG------YAESGDGQKVMHLFCSMKDMEKKF----- 49
           M+ A  +F  +   ++VSWN L+ G       +E+    + M L  S    E        
Sbjct: 417 MDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAASGETMLEGDDT 476

Query: 50  ---------SKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCG 100
                    +  +L T+L G A       G+ +H  A+R     D  +  +LVDMY+KCG
Sbjct: 477 SVDGQRCMPNNITLMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAVGSALVDMYAKCG 536

Query: 101 LADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLM-RESSVKPNQFVLTSLV 159
               A  VF R+   +V+ W  +I      G   EA  +F+ M       PN+    + +
Sbjct: 537 CLALARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFIAAL 596

Query: 160 RATTETG-DQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA---H 215
            A + +G   R  E    +   YGFE    +   +V +    GR+     +  ++A   H
Sbjct: 597 AACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVLGRAGRLDEAYGIISSMAPGEH 656

Query: 216 QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGF 271
           Q S +W+ +    + + +   G RI  + L +  +P+  +  V+L  C+  S  G 
Sbjct: 657 QVS-AWSTMLGACRLHRNVKLG-RIAAERLFE-LEPDEASHYVLL--CNIYSAAGL 707



 Score = 42.0 bits (97), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 7/128 (5%)

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTG--HLLDMFVSTALVAMYAKCGSIDDAEA 410
           + F L   +   + +    + R +H  +++    H     VS AL+  YA+CG +D A A
Sbjct: 47  DHFALPPAIKSAAALRDSRSTRAIHGASLRRALLHRPTPAVSNALLTAYARCGDLDAALA 106

Query: 411 VFKGSA--LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
           +F  +   LRD  S+N +I           AL+A R ML +  V    T V VL ACSH 
Sbjct: 107 LFAATPPDLRDAVSYNSLISALCLFRRWGHALDALRDMLADHEV-SSFTLVSVLLACSH- 164

Query: 469 GLIEEGKK 476
            L ++G +
Sbjct: 165 -LADQGHR 171


>gi|115486035|ref|NP_001068161.1| Os11g0583200 [Oryza sativa Japonica Group]
 gi|113645383|dbj|BAF28524.1| Os11g0583200 [Oryza sativa Japonica Group]
          Length = 703

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 173/534 (32%), Positives = 281/534 (52%), Gaps = 4/534 (0%)

Query: 68  KAGQVVHAMAIRL-GCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           + G+  HA A+RL   AL  F+   LV++YSK  L   A         P VV++ A I+ 
Sbjct: 32  RLGRAAHARALRLIAPALSPFICAHLVNLYSKLDLPAAAAAALASDPHPTVVSYTAFISG 91

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC-GESIHAVICKYGF-E 184
             Q G    A   F  M    ++PN F   S  +A      +   G  IH++  ++G+  
Sbjct: 92  AAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLP 151

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
            D  V  A + MY + GR+     +F  + +++ V+WNA+ +       P + +  ++ +
Sbjct: 152 VDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGL 211

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
              G  PN+ +      AC+    +  G+Q H   +K   + +  V  S+VD Y K  C 
Sbjct: 212 REAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCA 271

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
             A   FD +  ++  ++ +++ +YAQ G  E A   +   R  G +  +F ++S L  C
Sbjct: 272 GKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTC 331

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
           + +  L  GR LH++AV++    ++FV++ALV MY KCG ++DAE +F  +  R+  +WN
Sbjct: 332 AGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWN 391

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEG-YVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
            MIGGY   G  + AL  F  M+  G   P+ IT V V+++CS  GL ++G + F ++++
Sbjct: 392 AMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRE 451

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            +GI P  +H+AC++D+LGRAG   +    I    + P+  VW  LLGAC  HG  EL  
Sbjct: 452 RFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGR 511

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
             AEKL EL+P+   N+V  S++ A+ GRW + + +R  + + GIKK+P CSW+
Sbjct: 512 IAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGIKKDPGCSWV 565



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 122/265 (46%), Gaps = 1/265 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++LA+ +F  MP  NVV+WNA++      G   + +  +  +++     +  S       
Sbjct: 170 LKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFFNA 229

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A + Y+  G+  H   ++ G  +D  +  S+VD Y KC  A  A  VF  +   + V+W
Sbjct: 230 CAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSW 289

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +++    Q G  +EA   +   R S  +P  F+++S +           G ++HAV  +
Sbjct: 290 CSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVR 349

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              +++  V +ALV MY + G V    ++F     ++ V+WNA+   +         L +
Sbjct: 350 SCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLV 409

Query: 241 FYQMLLKG-FKPNMCTFIVILKACS 264
           F  M+  G   PN  T + ++ +CS
Sbjct: 410 FDDMIRSGETAPNYITLVNVITSCS 434


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 166/517 (32%), Positives = 269/517 (52%), Gaps = 35/517 (6%)

Query: 85  DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMR 144
           D F   +L+  Y+K G   N    F R+   D V++   I       C QE+ ++F  M+
Sbjct: 88  DXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQ 147

Query: 145 ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVS 204
               +P ++ + S++ A+ +  D R G+ IH  I    F  +  + NAL  MY + G + 
Sbjct: 148 REGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIE 207

Query: 205 YGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACS 264
               +F+ +  ++ VSWN + S +     P++ + + +QM L G  P+  T   I+ A  
Sbjct: 208 QARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAA-- 265

Query: 265 SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA 324
                                            Y + G +++A   F     KD+  +TA
Sbjct: 266 ---------------------------------YCQCGRVDEARRVFSEFKEKDIVCWTA 292

Query: 325 IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           ++  YA+ G  E AL  F +M LE I+ + +TL+S ++ C+ +A+L +G+ +H  ++  G
Sbjct: 293 MMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAG 352

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
              ++ VS+AL+ MY+KCG IDDA +VF     R+  SWN MI G  ++G  + ALE F 
Sbjct: 353 LNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFE 412

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA 504
            ML + + PD +TF+ +LSAC H   IE+G+++F SI   +G+TPT+ H+ACM+++LGR 
Sbjct: 413 NMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRT 472

Query: 505 GKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564
           G+  +    I      P+ L+W  LL  CS  G+I   E  A  L EL+P +   Y+  S
Sbjct: 473 GRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLS 532

Query: 565 DISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           ++ A+ GRW D + VR L+ S+ +KK    SWIE+D 
Sbjct: 533 NMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDN 569



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 115/441 (26%), Positives = 195/441 (44%), Gaps = 77/441 (17%)

Query: 156 TSLVRATTETGDQRCGESIHAVICKYGFE-SDTLVGNALVSMYMENGRVSYGSRVFEAIA 214
           T LV     T +    + + + +  + F+ +D+ + N L+ +Y + G++     +F+ + 
Sbjct: 26  TQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKML 85

Query: 215 HQDSVSWNALFS------------------RFQDYES-------------PDQGLRIFYQ 243
            +D  SWNAL S                   F+D  S             P + L +F +
Sbjct: 86  KRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKR 145

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +GF+P   T + IL A + L D+ +GKQ+H   I  +  GN  +  +L DMY K G 
Sbjct: 146 MQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGE 205

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +E A   FD L  K+L ++  +I+ YA+ G+ E  +    +MRL                
Sbjct: 206 IEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRL---------------- 249

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
                              +GH+ D    + ++A Y +CG +D+A  VF     +D   W
Sbjct: 250 -------------------SGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCW 290

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIK 482
             M+ GY K+G  E AL  F  ML E   PD  T   V+S+C+ +  +  G+  H  SI 
Sbjct: 291 TAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSI- 349

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
            + G+   +   + +ID+  + G F +    +     T N + W  ++  C+ +G+    
Sbjct: 350 -LAGLNNNLLVSSALIDMYSKCG-FIDDARSVFNLMPTRNVVSWNAMIVGCAQNGH---- 403

Query: 543 EKDAEKLLE--LEPKMESNYV 561
           +KDA +L E  L+ K + + V
Sbjct: 404 DKDALELFENMLQQKFKPDNV 424



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 189/413 (45%), Gaps = 36/413 (8%)

Query: 5   KRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANS 64
           K  F  MP  + VS+N  + G++ +   Q+ + LF  M+    + +++++ ++L   A  
Sbjct: 109 KATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQL 168

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
             ++ G+ +H   I      + F+  +L DMY+KCG  + A  +F  +   ++V+W  +I
Sbjct: 169 LDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMI 228

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
           +   + G  ++   + + MR S   P+Q  +++++ A                       
Sbjct: 229 SGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAA----------------------- 265

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
                       Y + GRV    RVF     +D V W A+   +      +  L +F +M
Sbjct: 266 ------------YCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEM 313

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
           LL+  +P+  T   ++ +C+ L+ +  G+ +H  +I   L+ N +V ++L+DMY K G +
Sbjct: 314 LLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFI 373

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
           +DA   F+ +  +++ ++ A+I   AQ G  + AL+ F  M  +  K +  T    L+ C
Sbjct: 374 DDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSAC 433

Query: 365 SPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
                +  G+    SI+ + G    +     +V +  + G I+ A A+ K  A
Sbjct: 434 LHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMA 486



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 163/349 (46%), Gaps = 48/349 (13%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ +F  + + N+VSWN +++GYA++G  +K + L   M+                 
Sbjct: 206 IEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRL---------------- 249

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              SG++                 D+    +++  Y +CG  D A +VF   K+ D+V W
Sbjct: 250 ---SGHMP----------------DQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCW 290

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A++    + G  ++A  +FN M    ++P+ + L+S+V +  +      G+++H     
Sbjct: 291 TAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSIL 350

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G  ++ LV +AL+ MY + G +     VF  +  ++ VSWNA+             L +
Sbjct: 351 AGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALEL 410

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL-----HAHTIKHSLDGNHVVGTSLV 295
           F  ML + FKP+  TFI IL AC   + +  G++      + H +  +LD        +V
Sbjct: 411 FENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHY----ACMV 466

Query: 296 DMYDKSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGE---AEMALK 340
           ++  ++G +E A     ++A + D   ++ +++  +  G+   AE+A +
Sbjct: 467 NLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAAR 515


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 177/510 (34%), Positives = 266/510 (52%), Gaps = 2/510 (0%)

Query: 92  LVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPN 151
           ++  YS+ G      K F  +   D+V+W A+I               F  M    + P 
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPG 60

Query: 152 QFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFE 211
           +  ++  + A T+  +   G SI   I   G E +++V  ALVSMY + G  +  + VF 
Sbjct: 61  EVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFL 120

Query: 212 AIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGF 271
            ++H+D V+W+A+ + +     P + L +F QM L G  PN  T +  L AC+SL D+  
Sbjct: 121 RMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRS 180

Query: 272 GKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQ 331
           G  +H       +    VVGT+LV++Y K G +E A  AF  +  K++ A++AI  +YA+
Sbjct: 181 GALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYAR 240

Query: 332 AGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL--DM 389
                 A++   +M LEG+  N  T  S L+ C+ +A L  GR +H      G  L  D+
Sbjct: 241 NDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESDV 300

Query: 390 FVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDE 449
           +V TALV MY+KCG++  A  +F   A  D   WN +I    +HG  EKALE F  M  E
Sbjct: 301 YVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLE 360

Query: 450 GYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTE 509
           G  P  ITF  VL ACSH G++++G+KHF S    +GI P  +HF CM+D+LGRAG   +
Sbjct: 361 GLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVD 420

Query: 510 IENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISAT 569
            E+ +      P+ + W   LGAC  + N++     AE L +L+P+  + YV  S++ A 
Sbjct: 421 SEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQLDPRKRAPYVLLSNMYAK 480

Query: 570 QGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            GRW+D + +R  +      KE   SWIEV
Sbjct: 481 AGRWSDVARMRQAMQLFMTVKEAGRSWIEV 510



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 190/372 (51%), Gaps = 2/372 (0%)

Query: 5   KRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANS 64
           ++ F  MP  ++VSWNAL+  Y  + D  +    F  M        +  +S  L    ++
Sbjct: 15  RKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPGEVGISIFLSACTDA 74

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
             I  G+ +    +  G   +  +  +LV MY K G   +A  VF R+   DVVAW A++
Sbjct: 75  REITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFLRMSHRDVVAWSAMV 134

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
               + G  +EA  +F  M    V PN+  L S + A    GD R G  +H  +   G +
Sbjct: 135 AAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQ 194

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
           S  +VG ALV++Y + GR+      F  I  ++ V+W+A+ + +   +     +R+ ++M
Sbjct: 195 SGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRM 254

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHT--IKHSLDGNHVVGTSLVDMYDKSG 302
            L+G  PN  TF+ +L AC++++ +  G+++H  T  +   L+ +  V T+LV+MY K G
Sbjct: 255 DLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESDVYVLTALVNMYSKCG 314

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            L  AG  FD +A+ DL  + ++I + AQ G+ E AL+ F +MRLEG++    T  S L 
Sbjct: 315 NLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLF 374

Query: 363 GCSPVATLANGR 374
            CS    L  GR
Sbjct: 375 ACSHAGMLDQGR 386



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 153/312 (49%), Gaps = 13/312 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A  VF  M   +VV+W+A++  YA +G  ++ + LF  M       +K +L + L   A+
Sbjct: 115 AASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACAS 174

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G +++G ++H      G      +  +LV++Y KCG  + A++ F +I + +VVAW AI
Sbjct: 175 LGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAI 234

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH--AVICKY 181
                +    ++A ++ + M    + PN     S++ A       + G  IH    +   
Sbjct: 235 SAAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGG 294

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G ESD  V  ALV+MY + G ++    +F+ IAH D V WN+L +    +   ++ L +F
Sbjct: 295 GLESDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKALELF 354

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS------LV 295
            +M L+G +P + TF  +L ACS     G   Q   H +  S  G+H +         +V
Sbjct: 355 ERMRLEGLQPTIITFTSVLFACSH---AGMLDQGRKHFV--SFIGDHGIFPEAEHFGCMV 409

Query: 296 DMYDKSGCLEDA 307
           D+  ++G + D+
Sbjct: 410 DLLGRAGWIVDS 421



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 4/169 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKF-SKFSLSTVLK 59
           +E A   F  + E NVV+W+A+   YA +   +  + +   M D+E    +  +  +VL 
Sbjct: 213 IEAAVEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRM-DLEGLVPNSTTFVSVLD 271

Query: 60  GFANSGYIKAGQVVHAMAIRLGCAL--DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
             A    +K G+ +H     LG  L  D ++  +LV+MYSKCG    A  +F +I   D+
Sbjct: 272 ACAAIAALKQGRRIHERTQVLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDL 331

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
           V W ++I    Q G  ++A ++F  MR   ++P     TS++ A +  G
Sbjct: 332 VLWNSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAG 380


>gi|449450916|ref|XP_004143208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 616

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 169/530 (31%), Positives = 282/530 (53%), Gaps = 2/530 (0%)

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
           G  VH+  I+LG +L+ ++  +LVDMY KC    +A KVF  +  P VV W +++T   Q
Sbjct: 87  GIQVHSTIIKLGFSLNPYIFTALVDMYGKCWSISDAHKVFDEMSCPSVVTWNSLVTGYLQ 146

Query: 130 QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
            G    A  +F  M +  ++P  F L+  +   ++      G  +HA+  K  F S+ +V
Sbjct: 147 AGYPLMAVSLFLEMLKKGIEPTPFSLSGGLVGCSQLQKGDLGSQLHAMSLKLRFSSNVVV 206

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
           G  L+ MY +   +    RVF+ + +++  +W ++ S +   + P + + +  +ML    
Sbjct: 207 GTGLIDMYSKCCNLQDSRRVFDIMLNKNVFTWTSMISGYARNQLPHEAMILMREMLHLNL 266

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS-GCLEDAG 308
           KPN  T+  +L + S        KQ+H   I    + N+ +  +LV  Y +  G LED  
Sbjct: 267 KPNGMTYNSLLSSFSCPRHFDKCKQIHCRIITEGYESNNYIAVTLVTAYSECCGSLEDYR 326

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
               ++   D  ++ A+I  +   G  E AL+CF +MR E    + FT  S        +
Sbjct: 327 KVCSNIRMSDQISWNAVIAGFTNLGIGEEALECFIQMRREKFDVDFFTFTSIFKAIGMTS 386

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
            L  G+ +H +  KTG+ L++ V   LV+MYA+ G+I D++ VF      D  SWN ++ 
Sbjct: 387 ALEEGKQIHGLVYKTGYTLNLSVQNGLVSMYARSGAIRDSKMVFSMMNEHDLISWNSLLS 446

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGI- 487
           G   HG GE+A++ F  M      PD  +F+ VL+ACSH+GL+++G ++F  ++    + 
Sbjct: 447 GCAYHGCGEEAIDLFEKMRRTCIKPDNTSFLAVLTACSHVGLLDKGLEYFKLMRNSELVE 506

Query: 488 TPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAE 547
            P ++H+A ++D+ GRAGK  E E FI    + P   +++ LL AC  HGN ++  + A+
Sbjct: 507 PPKLEHYATLVDLFGRAGKLYEAEAFIESIPIEPGISIYKALLSACLIHGNKDIAIRTAK 566

Query: 548 KLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           KLLEL P   + Y+  S+     G W+D + +R L+S++G+KKEP  SW+
Sbjct: 567 KLLELYPYDPATYIMLSNALGRDGYWDDAASIRRLMSNRGVKKEPGFSWM 616



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 124/433 (28%), Positives = 206/433 (47%), Gaps = 17/433 (3%)

Query: 139 IFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYM 198
           +  L+R  S  P   +LT  +   T++     G  +H+ I K GF  +  +  ALV MY 
Sbjct: 56  LVQLLRHGS-PPTPPILTKTISICTKSTLLDFGIQVHSTIIKLGFSLNPYIFTALVDMYG 114

Query: 199 ENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIV 258
           +   +S   +VF+ ++    V+WN+L + +     P   + +F +ML KG +P   +   
Sbjct: 115 KCWSISDAHKVFDEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEPTPFSLSG 174

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKD 318
            L  CS L     G QLHA ++K     N VVGT L+DMY K   L+D+   FD + NK+
Sbjct: 175 GLVGCSQLQKGDLGSQLHAMSLKLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDIMLNKN 234

Query: 319 LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHS 378
           +F +T++I+ YA+      A+   R+M    +K N  T  S L+  S        + +H 
Sbjct: 235 VFTWTSMISGYARNQLPHEAMILMREMLHLNLKPNGMTYNSLLSSFSCPRHFDKCKQIHC 294

Query: 379 IAVKTGHLLDMFVSTALVAMYAK-CGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGE 437
             +  G+  + +++  LV  Y++ CGS++D   V     + D  SWN +I G+   G+GE
Sbjct: 295 RIITEGYESNNYIAVTLVTAYSECCGSLEDYRKVCSNIRMSDQISWNAVIAGFTNLGIGE 354

Query: 438 KALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACM 497
           +ALE F  M  E +  D  TF  +  A      +EEGK+    + K  G T  +     +
Sbjct: 355 EALECFIQMRREKFDVDFFTFTSIFKAIGMTSALEEGKQIHGLVYKT-GYTLNLSVQNGL 413

Query: 498 IDILGRAGKFTE---IENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEP 554
           + +  R+G   +   + + + E  L    + W +LL  C++HG         E+ ++L  
Sbjct: 414 VSMYARSGAIRDSKMVFSMMNEHDL----ISWNSLLSGCAYHGC-------GEEAIDLFE 462

Query: 555 KMESNYVFPSDIS 567
           KM    + P + S
Sbjct: 463 KMRRTCIKPDNTS 475



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 130/487 (26%), Positives = 230/487 (47%), Gaps = 13/487 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A +VF  M   +VV+WN+L+ GY ++G     + LF  M     + + FSLS  L G + 
Sbjct: 122 AHKVFDEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEPTPFSLSGGLVGCSQ 181

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G  +HAM+++L  + +  +   L+DMYSKC    ++ +VF  + + +V  W ++
Sbjct: 182 LQKGDLGSQLHAMSLKLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDIMLNKNVFTWTSM 241

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   +     EA  +   M   ++KPN     SL+ + +        + IH  I   G+
Sbjct: 242 ISGYARNQLPHEAMILMREMLHLNLKPNGMTYNSLLSSFSCPRHFDKCKQIHCRIITEGY 301

Query: 184 ESDTLVGNALVSMYME-NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           ES+  +   LV+ Y E  G +    +V   I   D +SWNA+ + F +    ++ L  F 
Sbjct: 302 ESNNYIAVTLVTAYSECCGSLEDYRKVCSNIRMSDQISWNAVIAGFTNLGIGEEALECFI 361

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           QM  + F  +  TF  I KA    S +  GKQ+H    K     N  V   LV MY +SG
Sbjct: 362 QMRREKFDVDFFTFTSIFKAIGMTSALEEGKQIHGLVYKTGYTLNLSVQNGLVSMYARSG 421

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            + D+ + F  +   DL ++ ++++  A  G  E A+  F KMR   IK +  +  + L 
Sbjct: 422 AIRDSKMVFSMMNEHDLISWNSLLSGCAYHGCGEEAIDLFEKMRRTCIKPDNTSFLAVLT 481

Query: 363 GCSPVATLANG----RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
            CS V  L  G    +L+ +  +     L+ + +  LV ++ + G + +AEA  +   + 
Sbjct: 482 ACSHVGLLDKGLEYFKLMRNSELVEPPKLEHYAT--LVDLFGRAGKLYEAEAFIESIPIE 539

Query: 419 DTAS-WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
              S +  ++   + HG  + A+   + +L E Y  D  T++++ +A    G  ++    
Sbjct: 540 PGISIYKALLSACLIHGNKDIAIRTAKKLL-ELYPYDPATYIMLSNALGRDGYWDDA--- 595

Query: 478 FSSIKKI 484
            +SI+++
Sbjct: 596 -ASIRRL 601



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 133/272 (48%), Gaps = 12/272 (4%)

Query: 214 AHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGK 273
            H + VS   L    Q +   D  ++   Q+L  G  P        +  C+  + + FG 
Sbjct: 34  THSEDVSIKPLL---QTHNVVD--IQFLVQLLRHGSPPTPPILTKTISICTKSTLLDFGI 88

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
           Q+H+  IK     N  + T+LVDMY K   + DA   FD ++   +  + +++T Y QAG
Sbjct: 89  QVHSTIIKLGFSLNPYIFTALVDMYGKCWSISDAHKVFDEMSCPSVVTWNSLVTGYLQAG 148

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST 393
              MA+  F +M  +GI+   F+L+  L GCS +     G  LH++++K     ++ V T
Sbjct: 149 YPLMAVSLFLEMLKKGIEPTPFSLSGGLVGCSQLQKGDLGSQLHAMSLKLRFSSNVVVGT 208

Query: 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP 453
            L+ MY+KC ++ D+  VF     ++  +W  MI GY ++ L  +A+   R ML     P
Sbjct: 209 GLIDMYSKCCNLQDSRRVFDIMLNKNVFTWTSMISGYARNQLPHEAMILMREMLHLNLKP 268

Query: 454 DEITFVVVLSACSHMGLIEEGKKHFSSIKKIY 485
           + +T+  +LS+ S         +HF   K+I+
Sbjct: 269 NGMTYNSLLSSFS-------CPRHFDKCKQIH 293



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 87/166 (52%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E  ++V  ++   + +SWNA++ G+   G G++ +  F  M+  +     F+ +++ K 
Sbjct: 322 LEDYRKVCSNIRMSDQISWNAVIAGFTNLGIGEEALECFIQMRREKFDVDFFTFTSIFKA 381

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              +  ++ G+ +H +  + G  L+  +   LV MY++ G   ++  VF  + + D+++W
Sbjct: 382 IGMTSALEEGKQIHGLVYKTGYTLNLSVQNGLVSMYARSGAIRDSKMVFSMMNEHDLISW 441

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
            ++++     GC +EA  +F  MR + +KP+     +++ A +  G
Sbjct: 442 NSLLSGCAYHGCGEEAIDLFEKMRRTCIKPDNTSFLAVLTACSHVG 487


>gi|224145066|ref|XP_002325515.1| predicted protein [Populus trichocarpa]
 gi|222862390|gb|EEE99896.1| predicted protein [Populus trichocarpa]
          Length = 683

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 190/623 (30%), Positives = 292/623 (46%), Gaps = 60/623 (9%)

Query: 37  HLFCSMKDMEKK------FSKFSL-----------------STVLKGFANSGYIKAGQVV 73
           +LF S+KD+ +K      F  FSL                 S++L    N   +  G+ +
Sbjct: 4   NLFNSLKDLARKGHLLKAFETFSLIKLHASSANRDAILHSISSLLYSCTNLKSLPQGKQL 63

Query: 74  HAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCC 133
           HA  I LG      L   LV  YS   L  +A  +       + + W  +I+     G  
Sbjct: 64  HAHTISLGFENHLVLVPKLVTFYSSFSLLADAHTITVNSDIVNPLPWNLLISSYVNNGLH 123

Query: 134 QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI-CKYGFESDTLVGNA 192
            EA   +  M    V+P+ F   S+++A  E  D   G  +H  I   YG   +  V N+
Sbjct: 124 GEALSAYREMVHKGVRPDNFTYPSVLKACGEKLDLDFGREVHESINAAYGHRWNLYVHNS 183

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           LVSMY + G +    R+F  +  +D+VSWN + S +       +   +F +M L G + N
Sbjct: 184 LVSMYGKFGELDAARRLFNQMPERDAVSWNGIISNYASRGLWKEAFELFEEMRLAGAEVN 243

Query: 253 MCTF-----------------------------------IVILKACSSLSDVGFGKQLHA 277
           + T+                                   I+ L ACS +  +  G  +HA
Sbjct: 244 IITWNTIAGGCVQTRNFKGALELLSQMRRCDIDLDPVAMIIGLGACSHIGAIKLGTVIHA 303

Query: 278 HTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEM 337
             I+   DG   V  +L+ MY +   L  A + F S+  K L  + ++++ Y     +E 
Sbjct: 304 SAIRSCFDGFDNVRNALITMYSRCKDLRHADILFKSIKTKSLTTWNSMLSGYTHMDRSEE 363

Query: 338 ALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLD-MFVSTALV 396
           A   FR+M   GI+ N  T+AS L  C+ VA L  G+  H   ++     D + +  +LV
Sbjct: 364 ASFLFREMLFSGIEPNYVTIASILPHCARVANLQQGKEFHCYIMRREGFEDYLLLWNSLV 423

Query: 397 AMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI 456
            MYA+ G +  A+ VF     RD  ++  +I GY   G G+ AL+ F  M+     PD++
Sbjct: 424 EMYARSGKVLSAKRVFDSLRRRDKVTYTSLIAGYGIQGEGKTALKLFDEMIKHRIKPDQV 483

Query: 457 TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE 516
           T V VLSACSH GL+ EG   F  +  +YGI P ++HF+CM+D+ GRAG   + +  IT 
Sbjct: 484 TMVAVLSACSHSGLVTEGNVLFEKMSTLYGIVPAVEHFSCMVDLFGRAGLLNKAKKVITS 543

Query: 517 TKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDF 576
               P   +W  L+GAC  HGN E+ E  AEKLLE++P+    YV  +++ A  GRW+  
Sbjct: 544 MPYRPTTAMWATLVGACRIHGNTEIGEWAAEKLLEMKPENPGYYVLIANMHAAAGRWSKL 603

Query: 577 SGVRALLSSQGIKKEPSCSWIEV 599
           + VR  +   G++K P C+W++V
Sbjct: 604 AEVRTYMRDLGVRKAPGCTWVDV 626



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 119/478 (24%), Positives = 217/478 (45%), Gaps = 42/478 (8%)

Query: 14  LNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVV 73
           +N + WN L++ Y  +G   + +  +  M     +   F+  +VLK       +  G+ V
Sbjct: 105 VNPLPWNLLISSYVNNGLHGEALSAYREMVHKGVRPDNFTYPSVLKACGEKLDLDFGREV 164

Query: 74  H-AMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           H ++    G   + ++  SLV MY K G  D A ++F ++ + D V+W  II+    +G 
Sbjct: 165 HESINAAYGHRWNLYVHNSLVSMYGKFGELDAARRLFNQMPERDAVSWNGIISNYASRGL 224

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD-----------QRC----------- 170
            +EA ++F  MR +  + N     ++     +T +           +RC           
Sbjct: 225 WKEAFELFEEMRLAGAEVNIITWNTIAGGCVQTRNFKGALELLSQMRRCDIDLDPVAMII 284

Query: 171 -------------GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQD 217
                        G  IHA   +  F+    V NAL++MY     + +   +F++I  + 
Sbjct: 285 GLGACSHIGAIKLGTVIHASAIRSCFDGFDNVRNALITMYSRCKDLRHADILFKSIKTKS 344

Query: 218 SVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHA 277
             +WN++ S +   +  ++   +F +ML  G +PN  T   IL  C+ ++++  GK+ H 
Sbjct: 345 LTTWNSMLSGYTHMDRSEEASFLFREMLFSGIEPNYVTIASILPHCARVANLQQGKEFHC 404

Query: 278 HTIKHS-LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAE 336
           + ++    +   ++  SLV+MY +SG +  A   FDSL  +D   YT++I  Y   GE +
Sbjct: 405 YIMRREGFEDYLLLWNSLVEMYARSGKVLSAKRVFDSLRRRDKVTYTSLIAGYGIQGEGK 464

Query: 337 MALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL-HSIAVKTGHLLDMFVSTAL 395
            ALK F +M    IK ++ T+ + L+ CS    +  G +L   ++   G +  +   + +
Sbjct: 465 TALKLFDEMIKHRIKPDQVTMVAVLSACSHSGLVTEGNVLFEKMSTLYGIVPAVEHFSCM 524

Query: 396 VAMYAKCGSIDDAEAVFKGSALRD-TASWNMMIGGYVKHG---LGEKALEAFRMMLDE 449
           V ++ + G ++ A+ V      R  TA W  ++G    HG   +GE A E    M  E
Sbjct: 525 VDLFGRAGLLNKAKKVITSMPYRPTTAMWATLVGACRIHGNTEIGEWAAEKLLEMKPE 582



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 167/370 (45%), Gaps = 49/370 (13%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+R+F  MPE + VSWN +++ YA  G  ++   LF  M+    + +  + +T+  G
Sbjct: 194 LDAARRLFNQMPERDAVSWNGIISNYASRGLWKEAFELFEEMRLAGAEVNIITWNTIAGG 253

Query: 61  FANS-----------------------------------GYIKAGQVVHAMAIRLGCALD 85
              +                                   G IK G V+HA AIR     D
Sbjct: 254 CVQTRNFKGALELLSQMRRCDIDLDPVAMIIGLGACSHIGAIKLGTVIHASAIR--SCFD 311

Query: 86  KF--LSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLM 143
            F  +  +L+ MYS+C    +A  +F  IK   +  W ++++        +EA+ +F  M
Sbjct: 312 GFDNVRNALITMYSRCKDLRHADILFKSIKTKSLTTWNSMLSGYTHMDRSEEASFLFREM 371

Query: 144 RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY-GFESDTLVGNALVSMYMENGR 202
             S ++PN   + S++       + + G+  H  I +  GFE   L+ N+LV MY  +G+
Sbjct: 372 LFSGIEPNYVTIASILPHCARVANLQQGKEFHCYIMRREGFEDYLLLWNSLVEMYARSGK 431

Query: 203 VSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKA 262
           V    RVF+++  +D V++ +L + +         L++F +M+    KP+  T + +L A
Sbjct: 432 VLSAKRVFDSLRRRDKVTYTSLIAGYGIQGEGKTALKLFDEMIKHRIKPDQVTMVAVLSA 491

Query: 263 CS-----SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK 317
           CS     +  +V F K    + I  +++  H   + +VD++ ++G L  A     S+  +
Sbjct: 492 CSHSGLVTEGNVLFEKMSTLYGIVPAVE--HF--SCMVDLFGRAGLLNKAKKVITSMPYR 547

Query: 318 DLFAYTAIIT 327
              A  A + 
Sbjct: 548 PTTAMWATLV 557


>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
          Length = 694

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 173/534 (32%), Positives = 281/534 (52%), Gaps = 4/534 (0%)

Query: 68  KAGQVVHAMAIRL-GCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           + G+  HA A+RL   AL  F+   LV++YSK  L   A         P VV++ A I+ 
Sbjct: 32  RLGRAAHARALRLIAPALSPFICAHLVNLYSKLDLPAAAAAALASDPHPTVVSYTAFISG 91

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC-GESIHAVICKYGF-E 184
             Q G    A   F  M    ++PN F   S  +A      +   G  IH++  ++G+  
Sbjct: 92  AAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLP 151

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
            D  V  A + MY + GR+     +F  + +++ V+WNA+ +       P + +  ++ +
Sbjct: 152 VDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGL 211

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
              G  PN+ +      AC+    +  G+Q H   +K   + +  V  S+VD Y K  C 
Sbjct: 212 REAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCA 271

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
             A   FD +  ++  ++ +++ +YAQ G  E A   +   R  G +  +F ++S L  C
Sbjct: 272 GKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTC 331

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
           + +  L  GR LH++AV++    ++FV++ALV MY KCG ++DAE +F  +  R+  +WN
Sbjct: 332 AGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWN 391

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEG-YVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
            MIGGY   G  + AL  F  M+  G   P+ IT V V+++CS  GL ++G + F ++++
Sbjct: 392 AMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRE 451

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            +GI P  +H+AC++D+LGRAG   +    I    + P+  VW  LLGAC  HG  EL  
Sbjct: 452 RFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGR 511

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
             AEKL EL+P+   N+V  S++ A+ GRW + + +R  + + GIKK+P CSW+
Sbjct: 512 IAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGIKKDPGCSWV 565



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 122/265 (46%), Gaps = 1/265 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++LA+ +F  MP  NVV+WNA++      G   + +  +  +++     +  S       
Sbjct: 170 LKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFFNA 229

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A + Y+  G+  H   ++ G  +D  +  S+VD Y KC  A  A  VF  +   + V+W
Sbjct: 230 CAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSW 289

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +++    Q G  +EA   +   R S  +P  F+++S +           G ++HAV  +
Sbjct: 290 CSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVR 349

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              +++  V +ALV MY + G V    ++F     ++ V+WNA+   +         L +
Sbjct: 350 SCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLV 409

Query: 241 FYQMLLKG-FKPNMCTFIVILKACS 264
           F  M+  G   PN  T + ++ +CS
Sbjct: 410 FDDMIRSGETAPNYITLVNVITSCS 434


>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240 [Vitis vinifera]
          Length = 565

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 174/537 (32%), Positives = 275/537 (51%), Gaps = 10/537 (1%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDM--YSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
           +H + I      D      LVD   YS  G  + A  VF +I  P +  W ++I      
Sbjct: 24  LHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLYIWNSMIKGYSIS 83

Query: 131 GCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVG 190
               EA  ++  MR+    P+ F    +++A +       G+ +H  I K GFE D    
Sbjct: 84  ESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCIVKTGFEVDVYAA 143

Query: 191 NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFK 250
            AL+ MY   G +    +VF+ I   + V+W +L +     + P + +R++  M L    
Sbjct: 144 TALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDMELWSVA 203

Query: 251 PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDG-------NHVVGTSLVDMYDKSGC 303
           PN  T + +L AC+   D+  G+ +H  T +  LD        N ++ T++VDMY K G 
Sbjct: 204 PNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNVILATAIVDMYAKCGS 263

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L+ A   F+ + +++L A+ ++I +Y Q G+A  AL  F  MR+ G   ++ T    +  
Sbjct: 264 LKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSDMRIAGFDPDKATFLCVIGA 323

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +  L +G+ LH+   KT    D  + TALV MYAK G  + A+ VF     +D  +W
Sbjct: 324 CAHLGALVSGQALHAYVSKTNLTDDTAIGTALVDMYAKSGDAERAQQVFSELQKKDVTAW 383

Query: 424 NMMIGGYVKHGLGEKALEAFR-MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
             +I G   HG GE+AL  F+ M  D   +PDEIT++ VLSACSH+G +E+GK HF S+K
Sbjct: 384 TSLIIGLAMHGHGEEALTFFKKMQEDTALIPDEITYIGVLSACSHVGKVEDGKNHFISMK 443

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
            ++GI PT +H+ CM+D+L RAG+  E E  + +  + PN  +W  LL  C  + NI++ 
Sbjct: 444 NVHGIEPTTQHYGCMVDLLSRAGRLGEAERLVEKMPVEPNTAIWSALLNGCKIYQNIDVA 503

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           ++   ++ ELE      YV  S+I A   RW +    R L+  + I+K    S +E+
Sbjct: 504 DRVRRRVRELEVDGSGVYVLLSNIYAGACRWEEVKMARELMKERKIQKSLGHSSVEM 560



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 125/440 (28%), Positives = 225/440 (51%), Gaps = 12/440 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  AK VF  +   ++  WN+++ GY+ S    + + ++  M+        F+   VLK 
Sbjct: 55  LNYAKSVFNQIDRPSLYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKA 114

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +       GQ VH   ++ G  +D + + +L+ MY+ CG  + ALKVF  I   +VVAW
Sbjct: 115 CSLVNGYNLGQCVHNCIVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAW 174

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I       C  EA +++  M   SV PN+  + +++ A   + D   G  +H    +
Sbjct: 175 TSLIAGCISNDCPSEAVRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQ 234

Query: 181 YG---FESDT----LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
            G   F+S++    ++  A+V MY + G +     +F  + H++ V+WN++   +  Y  
Sbjct: 235 MGLDPFQSNSNFNVILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQ 294

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
            ++ L +F  M + GF P+  TF+ ++ AC+ L  +  G+ LHA+  K +L  +  +GT+
Sbjct: 295 ANEALDLFSDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTAIGTA 354

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE-GIKS 352
           LVDMY KSG  E A   F  L  KD+ A+T++I   A  G  E AL  F+KM+ +  +  
Sbjct: 355 LVDMYAKSGDAERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTALIP 414

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST--ALVAMYAKCGSIDDAEA 410
           +E T    L+ CS V  + +G+  H I++K  H ++        +V + ++ G + +AE 
Sbjct: 415 DEITYIGVLSACSHVGKVEDGK-NHFISMKNVHGIEPTTQHYGCMVDLLSRAGRLGEAER 473

Query: 411 VFKGSALR-DTASWNMMIGG 429
           + +   +  +TA W+ ++ G
Sbjct: 474 LVEKMPVEPNTAIWSALLNG 493


>gi|326526571|dbj|BAJ97302.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 851

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 203/616 (32%), Positives = 328/616 (53%), Gaps = 23/616 (3%)

Query: 1   MELAKRVFKSMPEL--NVVSWNALLNGYAESGDGQKVMHLFCS-MKDMEKKFSKFSLSTV 57
           +E A++VF  +P+   N+VSWNAL+   A SGD ++ + LF   +  +     + +L TV
Sbjct: 119 VEDAEKVFGGIPDAARNIVSWNALMA--ALSGDPRRGLELFRDCLVAVGGMVDEATLVTV 176

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
           L   A  G+ + G+ VH +A + G      +  +LVDMY+KCG   +A + F   + P V
Sbjct: 177 LPMCAALGWSETGRAVHGLAAKSGWDAPARVGNALVDMYAKCGELADAERAF--PEAPSV 234

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRE------SSVKPNQFVLTSLVRATTETGDQRCG 171
           V+W  ++    +    +EA   F L+R+       SV  ++  + S++ A +   +    
Sbjct: 235 VSWNVMLGAYTRN---REAGAAFGLLRDMQIKEHGSVPADEITVLSVLPACSGPTELSRL 291

Query: 172 ESIHAVICKYGFESDT-LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
             +HA   + G ++ +  V NALV+ Y   GR+ +  RVF  I  +   SWN L S    
Sbjct: 292 RELHAFTVRRGLDAASDKVPNALVAAYGRCGRLLHADRVFTDIRRKTVSSWNTLISAHAQ 351

Query: 231 YESPDQGLRIFYQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
            ++    + +F QM    G KP+  +   +L AC+    +   K  H   +++ L+ + V
Sbjct: 352 -QNTAAAIELFIQMTNACGLKPDGFSIGSLLMACADPKHLLHVKATHGFILRNGLERDTV 410

Query: 290 VGTSLVDMYDKSGCLED-AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR-L 347
           +  SL+  Y +    E  A V FD++  K    + A+I+ Y+Q G    +L+ FR+M+ +
Sbjct: 411 IRASLLSAYIRCSRTEYLARVLFDAMEEKGEVLWIAMISGYSQNGLPGESLQLFREMQSV 470

Query: 348 EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
           EG  S+  +  S L  CS ++++  G+ +H  A+K     D F+S++L+ MY+KCG ++D
Sbjct: 471 EGHCSSVISATSALMACSELSSVRLGKEMHCFALKADLCDDPFLSSSLIDMYSKCGFVED 530

Query: 408 AEAVFKGSALRDT-ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
           A   F     RD   SW  MI GY  +GLG +A+E +  M  EG  PDE T++ +L AC 
Sbjct: 531 ARTFFDRLKARDAKVSWTAMITGYAVNGLGREAVELYGKMRREGMEPDEFTYLGLLMACG 590

Query: 467 HMGLIEEGKKHFSSIKKIY-GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV 525
           H G++EEG + F  ++  +  I   ++H++C+I +L RAG+F +    + E    P+A +
Sbjct: 591 HAGMLEEGLRFFDEMRNHHHKIEVKLEHYSCVIGMLSRAGRFADAVALMAEMPQEPDAKI 650

Query: 526 WENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSS 585
             ++L AC  HG  EL    AE+LLELEP    +YV  S++ A   RW+D   VR +L  
Sbjct: 651 LSSVLSACHIHGEAELGSDVAERLLELEPDKAEHYVLASNMYAGSRRWDDMRKVRKMLRD 710

Query: 586 QGIKKEPSCSWIEVDG 601
            GI KEP CSWI+V G
Sbjct: 711 AGIAKEPGCSWIDVAG 726



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 139/530 (26%), Positives = 242/530 (45%), Gaps = 28/530 (5%)

Query: 19  WNALLNGYAESGDGQKVMHLFCSMKDMEKKFS--KFSLSTVLK--GFANSGYIKAGQVVH 74
           WNALL  ++ +G     + L   +    +  +  +F+L    +  GF   G   AG+ VH
Sbjct: 32  WNALLADHSRAGRHADALALLPPLLAASEGIAPDRFTLPPAARSCGFLRVGAAAAGRQVH 91

Query: 75  AMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP--DVVAWGAIITCLDQQGC 132
           A+A +LG   D F+  SLV MY +CG  ++A KVF  I D   ++V+W A++  L     
Sbjct: 92  ALAAKLGLPGDPFVGNSLVSMYGRCGRVEDAEKVFGGIPDAARNIVSWNALMAALS---- 147

Query: 133 CQEAAKIFNLMRESSVKPNQFV----LTSLVRATTETGDQRCGESIHAVICKYGFESDTL 188
             +  +   L R+  V     V    L +++      G    G ++H +  K G+++   
Sbjct: 148 -GDPRRGLELFRDCLVAVGGMVDEATLVTVLPMCAALGWSETGRAVHGLAAKSGWDAPAR 206

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK- 247
           VGNALV MY + G ++   R F        VSWN +   +           +   M +K 
Sbjct: 207 VGNALVDMYAKCGELADAERAFPEA--PSVVSWNVMLGAYTRNREAGAAFGLLRDMQIKE 264

Query: 248 -GFKP-NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLD-GNHVVGTSLVDMYDKSGCL 304
            G  P +  T + +L ACS  +++   ++LHA T++  LD  +  V  +LV  Y + G L
Sbjct: 265 HGSVPADEITVLSVLPACSGPTELSRLRELHAFTVRRGLDAASDKVPNALVAAYGRCGRL 324

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE-GIKSNEFTLASCLNG 363
             A   F  +  K + ++  +I+++AQ   A  A++ F +M    G+K + F++ S L  
Sbjct: 325 LHADRVFTDIRRKTVSSWNTLISAHAQQNTA-AAIELFIQMTNACGLKPDGFSIGSLLMA 383

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD-AEAVFKGSALRDTAS 422
           C+    L + +  H   ++ G   D  +  +L++ Y +C   +  A  +F     +    
Sbjct: 384 CADPKHLLHVKATHGFILRNGLERDTVIRASLLSAYIRCSRTEYLARVLFDAMEEKGEVL 443

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLD-EGYVPDEITFVVVLSACSHMGLIEEGKK-HFSS 480
           W  MI GY ++GL  ++L+ FR M   EG+    I+    L ACS +  +  GK+ H  +
Sbjct: 444 WIAMISGYSQNGLPGESLQLFREMQSVEGHCSSVISATSALMACSELSSVRLGKEMHCFA 503

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
           +K      P +   + +ID+  + G   +   F    K     + W  ++
Sbjct: 504 LKADLCDDPFLS--SSLIDMYSKCGFVEDARTFFDRLKARDAKVSWTAMI 551


>gi|347954478|gb|AEP33739.1| chlororespiratory reduction 21, partial [Matthiola sinuata]
          Length = 794

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 178/599 (29%), Positives = 311/599 (51%), Gaps = 33/599 (5%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF  +P+ N V+WNAL+ GY ++G  ++ + L   M+    + ++ ++ST L   AN
Sbjct: 191 ARKVFDYIPDRNAVAWNALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSASAN 250

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G I+ G+  HA+AI  G  LD  L  S+++ Y K GL + A  +F  + + DVV W  +
Sbjct: 251 MGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVVTWNLL 310

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   QQG  +EA  +  LMR  ++K +   L++L+ A T T + + G+ I     ++G 
Sbjct: 311 ISGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGL 370

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           ESD ++ +  V MY + G +    +VF++   +D + WN L S + D     + LR+FY+
Sbjct: 371 ESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYE 430

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M L+   PN+ T+ +I+ +      V   K++                            
Sbjct: 431 MQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQ------------------------- 465

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++ +G+        +L ++T ++    Q G +E A+   RKM+   ++ N FT+   L+ 
Sbjct: 466 MQSSGIF------PNLISWTTMMNGLVQNGCSEEAILFLRKMQESRLRPNAFTITVALSA 519

Query: 364 CSPVATLANGRLLHSIAVKTGHL-LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
           C+ +A+L  GR +H   ++         + T+LV MYAKCG I+ AE VF      +   
Sbjct: 520 CANLASLHFGRSIHGYIIRNQQYSFSASIETSLVDMYAKCGDINKAERVFGSKLCSELPL 579

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           +N MI  Y  +G   +A+  +R + D G  PD IT   +LS C++   + +  + FS + 
Sbjct: 580 YNAMISAYALYGKVREAITLYRSLEDGGVKPDNITITSLLS-CNYGRDVNQAIEVFSDMV 638

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
             +G+ P ++H+  M+D+L  AG+  +    + E    P+A + ++L  +CS     EL 
Sbjct: 639 SKHGMKPCLEHYGLMVDLLASAGETDKALRLMEEMPYKPDARMVQSLFESCSKQHKTELV 698

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           E  ++ LLE EP    NYV  S+  A +G W++ + +R ++  +G+KK+P CSWI++ G
Sbjct: 699 EYLSKHLLESEPDNSGNYVMISNAYAVEGSWDEVAKMREMMKVKGLKKKPGCSWIQIKG 757



 Score =  211 bits (537), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 138/512 (26%), Positives = 255/512 (49%), Gaps = 6/512 (1%)

Query: 28  ESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLG--CALD 85
           ++G+ ++ + L   M     +        +L+G      +  GQ +HA  ++ G   A +
Sbjct: 11  KNGEIREALSLVTEMDYRNIRIGPEIYGEILQGCVYERDLCTGQQIHAQILKKGDFYARN 70

Query: 86  KFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRE 145
           +++   LV  Y+KC   + A  +F +++  +V +W AII    + G  + A   F  M E
Sbjct: 71  EYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEGALMGFVEMLE 130

Query: 146 SSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSY 205
           + + P+ FV+ ++ +A       R G  +H  + K G      V ++L  MY + G +  
Sbjct: 131 NGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVFVASSLADMYGKCGVLDD 190

Query: 206 GSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSS 265
             +VF+ I  +++V+WNAL   +      ++ +R+  +M  +G +P   T    L A ++
Sbjct: 191 ARKVFDYIPDRNAVAWNALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSASAN 250

Query: 266 LSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
           +  +  GKQ HA  I + L+ ++++GTS+++ Y K G +E A + FD +  KD+  +  +
Sbjct: 251 MGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVVTWNLL 310

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH 385
           I+ Y Q G  E A+   + MR E +K +  TL++ ++  +    L  G+ +    ++ G 
Sbjct: 311 ISGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGL 370

Query: 386 LLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRM 445
             D+ +++  V MYAKCGSI +A+ VF  +  +D   WN ++  Y   GL  +AL  F  
Sbjct: 371 ESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYE 430

Query: 446 MLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAG 505
           M  E   P+ IT+ +++ +    G + E K+ F  ++   GI P +  +  M++ L + G
Sbjct: 431 MQLESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQS-SGIFPNLISWTTMMNGLVQNG 489

Query: 506 KFTEIENFI---TETKLTPNALVWENLLGACS 534
              E   F+    E++L PNA      L AC+
Sbjct: 490 CSEEAILFLRKMQESRLRPNAFTITVALSACA 521



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 140/571 (24%), Positives = 269/571 (47%), Gaps = 43/571 (7%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E+A+ +F  +   NV SW A++      G G+  +  F  M +       F +  V K 
Sbjct: 87  LEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEGALMGFVEMLENGIFPDNFVVPNVCKA 146

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                + + G+ VH    + G     F++ SL DMY KCG+ D+A KVF  I D + VAW
Sbjct: 147 CGALQWSRFGRGVHGYVAKAGLHHCVFVASSLADMYGKCGVLDDARKVFDYIPDRNAVAW 206

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A++    Q G  +EA ++ + MR+  ++P +  +++ + A+   G    G+  HA+   
Sbjct: 207 NALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSHAIAIV 266

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G E D ++G ++++ Y + G + Y   +F+ +  +D V+WN L S +      ++ + +
Sbjct: 267 NGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVVTWNLLISGYVQQGLVEEAIYM 326

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
              M  +  K +  T   ++ A +S  ++  GK++  + I+H L+ + V+ ++ VDMY K
Sbjct: 327 CQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLESDIVLASTAVDMYAK 386

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G + +A   FDS   KDL  +  ++++YA +G +  AL+ F +M+LE +  N  T    
Sbjct: 387 CGSIVNAKKVFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYEMQLESVPPNVITWNLI 446

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           +     ++ L NG++            +MF+                +  +F      + 
Sbjct: 447 I-----LSLLRNGQV--------NEAKEMFLQM-------------QSSGIFP-----NL 475

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SW  M+ G V++G  E+A+   R M +    P+  T  V LSAC+++  +  G+     
Sbjct: 476 ISWTTMMNGLVQNGCSEEAILFLRKMQESRLRPNAFTITVALSACANLASLHFGRSIHGY 535

Query: 481 I--KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           I   + Y  + +I+    ++D+  + G   + E  +  +KL     ++  ++ A + +G 
Sbjct: 536 IIRNQQYSFSASIE--TSLVDMYAKCGDINKAER-VFGSKLCSELPLYNAMISAYALYGK 592

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISAT 569
           +        + + L   +E   V P +I+ T
Sbjct: 593 V-------REAITLYRSLEDGGVKPDNITIT 616



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 96/215 (44%), Gaps = 10/215 (4%)

Query: 321 AYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIA 380
           +Y   ++S  + GE   AL    +M    I+         L GC     L  G+ +H+  
Sbjct: 1   SYFHRVSSLCKNGEIREALSLVTEMDYRNIRIGPEIYGEILQGCVYERDLCTGQQIHAQI 60

Query: 381 VKTG--HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEK 438
           +K G  +  + ++ T LV  YAKC +++ A+ +F    +R+  SW  +IG   + GLGE 
Sbjct: 61  LKKGDFYARNEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEG 120

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMI 498
           AL  F  ML+ G  PD      V  AC  +     G+     + K  G+   +   + + 
Sbjct: 121 ALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKA-GLHHCVFVASSLA 179

Query: 499 DILGRAGKFTE---IENFITETKLTPNALVWENLL 530
           D+ G+ G   +   + ++I +     NA+ W  L+
Sbjct: 180 DMYGKCGVLDDARKVFDYIPDR----NAVAWNALM 210


>gi|226528958|ref|NP_001141436.1| uncharacterized protein LOC100273546 [Zea mays]
 gi|194704572|gb|ACF86370.1| unknown [Zea mays]
 gi|414877969|tpg|DAA55100.1| TPA: hypothetical protein ZEAMMB73_905907 [Zea mays]
          Length = 700

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 203/648 (31%), Positives = 318/648 (49%), Gaps = 80/648 (12%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F  MP  N VSWNA++   ++ G       LF  M   ++    FS + ++  +A 
Sbjct: 68  ARALFDGMPGRNTVSWNAMIAALSDHGRVADARSLFDRMPVRDE----FSWTVMVSCYAR 123

Query: 64  SGYIK-AGQVVHAMAIRLGCALDKFLSC--SLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            G ++ A  V+  M        DK  +C  +++  Y+K G  D+A+K+   +  PD+V+W
Sbjct: 124 GGDLELARDVLDRMPG------DKCTACYNAMISGYAKNGRFDDAMKLLREMPAPDLVSW 177

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            + +  L Q G    A + F+ M +     N  +L   VR    TGD     S  A I  
Sbjct: 178 NSALAGLTQSGEMVRAVQFFDEMVKDMTSWN-LMLAGFVR----TGDLNAASSFFAKI-- 230

Query: 181 YGFESDTLVG-NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
              ES  ++    L++ Y   GR++    +F+ +  ++ V+WN +   +      ++  +
Sbjct: 231 ---ESPNVISWVTLLNGYCRAGRIADARDLFDRMPERNVVAWNVMLDGYVHLSPIEEACK 287

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDV--------------------GFGKQLHAHT 279
           +F +M +K    +  T I  L     L +                     G+ ++  A  
Sbjct: 288 LFDEMPIKN-SISWTTIISGLARAGKLQEAKDLLDKMSFNCVAAKTALMHGYLQRNMADD 346

Query: 280 IKHSLDGNHVVGT----SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEA 335
            +   DG  V  T    +++  Y + G LE+A + F  + NKD+ ++  +I  YAQ G+ 
Sbjct: 347 ARRIFDGMEVHDTVCWNTMISGYVQCGILEEAMLLFQRMPNKDMVSWNTMIAGYAQDGQM 406

Query: 336 EMALKCFRKMRLEG-----------IKSNEF--------------------TLASCLNGC 364
             A+  FR+M               ++++ F                    T ASCL  C
Sbjct: 407 HKAIGIFRRMNRRNTVSWNSVISGFVQNDRFVDALHHFMLMRRGTNRADWSTYASCLRAC 466

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
           + +A L  GR LH++ V++GH+ D F   AL++ YAKCG I +A+ +F     +D  SWN
Sbjct: 467 ANLAVLHVGRQLHNLLVRSGHINDSFAGNALISTYAKCGRILEAKQIFDEMVYKDIVSWN 526

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
            +I GY  +G G +A+  FR M   G  PDE+TFV +LSACSH GLI+EG   F S+ K 
Sbjct: 527 ALIDGYASNGQGTEAIAVFREMEANGVRPDEVTFVGILSACSHAGLIDEGLFFFYSMTKE 586

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEK 544
           Y + P  +H+ACM+D+LGRAGK  E    +   ++ PNA VW  LLGAC  H N EL + 
Sbjct: 587 YLLKPVAEHYACMVDLLGRAGKLNEAFELVQGMQIQPNAGVWGALLGACHMHKNHELAQL 646

Query: 545 DAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEP 592
            AE+L ELEP+  SNYV  S+ISA  G+W++    RA +  +G+ K P
Sbjct: 647 AAERLSELEPRKASNYVLLSNISAEAGKWDESEKARASIKEKGVNKPP 694



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 130/296 (43%), Gaps = 41/296 (13%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A ++F  MP  N +SW  +++G A +G  Q+   L   M      F+  +  T L  
Sbjct: 282 IEEACKLFDEMPIKNSISWTTIISGLARAGKLQEAKDLLDKM-----SFNCVAAKTALM- 335

Query: 61  FANSGYIKAGQVVHAMAIRLGCAL-DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
               GY++      A  I  G  + D     +++  Y +CG+ + A+ +F R+ + D+V+
Sbjct: 336 ---HGYLQRNMADDARRIFDGMEVHDTVCWNTMISGYVQCGILEEAMLLFQRMPNKDMVS 392

Query: 120 WGAIITCLDQQGCCQEAAKIFN-------------------------------LMRESSV 148
           W  +I    Q G   +A  IF                                LMR  + 
Sbjct: 393 WNTMIAGYAQDGQMHKAIGIFRRMNRRNTVSWNSVISGFVQNDRFVDALHHFMLMRRGTN 452

Query: 149 KPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSR 208
           + +     S +RA         G  +H ++ + G  +D+  GNAL+S Y + GR+    +
Sbjct: 453 RADWSTYASCLRACANLAVLHVGRQLHNLLVRSGHINDSFAGNALISTYAKCGRILEAKQ 512

Query: 209 VFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACS 264
           +F+ + ++D VSWNAL   +       + + +F +M   G +P+  TF+ IL ACS
Sbjct: 513 IFDEMVYKDIVSWNALIDGYASNGQGTEAIAVFREMEANGVRPDEVTFVGILSACS 568



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 81/166 (48%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A  +F+ M   N VSWN++++G+ ++      +H F  M+    +    + ++ L+ 
Sbjct: 406 MHKAIGIFRRMNRRNTVSWNSVISGFVQNDRFVDALHHFMLMRRGTNRADWSTYASCLRA 465

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            AN   +  G+ +H + +R G   D F   +L+  Y+KCG    A ++F  +   D+V+W
Sbjct: 466 CANLAVLHVGRQLHNLLVRSGHINDSFAGNALISTYAKCGRILEAKQIFDEMVYKDIVSW 525

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
            A+I      G   EA  +F  M  + V+P++     ++ A +  G
Sbjct: 526 NALIDGYASNGQGTEAIAVFREMEANGVRPDEVTFVGILSACSHAG 571



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/297 (20%), Positives = 129/297 (43%), Gaps = 34/297 (11%)

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
           +T+  NA++S    +GR+     +F+ +  +++VSWNA+ +   D+        +F +M 
Sbjct: 48  NTVTYNAMLSALARHGRIDEARALFDGMPGRNTVSWNAMIAALSDHGRVADARSLFDRMP 107

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG--TSLVDMYDKSGC 303
           ++    +  ++ V++   +   D+       A  +   + G+       +++  Y K+G 
Sbjct: 108 VR----DEFSWTVMVSCYARGGDLEL-----ARDVLDRMPGDKCTACYNAMISGYAKNGR 158

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN----EFTLAS 359
            +DA      +   DL ++ + +    Q+GE   A++ F +M  +    N     F    
Sbjct: 159 FDDAMKLLREMPAPDLVSWNSALAGLTQSGEMVRAVQFFDEMVKDMTSWNLMLAGFVRTG 218

Query: 360 CLNGCSP-VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
            LN  S   A + +  ++  + +  G              Y + G I DA  +F     R
Sbjct: 219 DLNAASSFFAKIESPNVISWVTLLNG--------------YCRAGRIADARDLFDRMPER 264

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           +  +WN+M+ GYV     E+A + F    DE  + + I++  ++S  +  G ++E K
Sbjct: 265 NVVAWNVMLDGYVHLSPIEEACKLF----DEMPIKNSISWTTIISGLARAGKLQEAK 317



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 15/157 (9%)

Query: 386 LLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRM 445
           L +     A+++  A+ G ID+A A+F G   R+T SWN MI     HG    A    R 
Sbjct: 46  LRNTVTYNAMLSALARHGRIDEARALFDGMPGRNTVSWNAMIAALSDHGRVADA----RS 101

Query: 446 MLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFAC---MIDILG 502
           + D   V DE ++ V++S  +  G +E  +     +       P  K  AC   MI    
Sbjct: 102 LFDRMPVRDEFSWTVMVSCYARGGDLELARDVLDRM-------PGDKCTACYNAMISGYA 154

Query: 503 RAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           + G+F +    + E    P+ + W + L   +  G +
Sbjct: 155 KNGRFDDAMKLLREMP-APDLVSWNSALAGLTQSGEM 190


>gi|357483095|ref|XP_003611834.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513169|gb|AES94792.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 985

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 185/602 (30%), Positives = 319/602 (52%), Gaps = 5/602 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKV--MHLFCSMKDMEKKFSKFSLSTVL 58
           +E A +VF  MP+   VS+NALL  Y+   +   V   +L+  M++M  + S  +++++L
Sbjct: 333 LEDAHQVFDKMPQRTHVSYNALLAAYSRVSEQHCVYAFNLYTQMENMGLRPSNMTITSLL 392

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
           +  +  G +  G ++HA +++ G   D  +  SL++MYS C    +A  VF  + + D V
Sbjct: 393 QAASLHGDLLIGLLLHAKSLKFGFLNDICVQTSLLNMYSSCMDLSSAESVFCDMNERDNV 452

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           AW ++I    +    ++   +F  M      P  +    ++ A +   D   G  IHA +
Sbjct: 453 AWNSLILGYLKNDKIEKGVYLFIEMMWVGFTPTVYTFCMILSACSRLKDYFSGRLIHARV 512

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
                  D  + NALV MY   G       +F  +   D VSWN++ S + + E  ++ +
Sbjct: 513 IVGNVSPDLHLQNALVDMYCNAGDTQTAYMIFSRMEKWDLVSWNSMISGYFENEDGEKAM 572

Query: 239 RIFYQMLLKGF-KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
            +F Q+    F KP+  T+  I+ A  +     +GK LH   IK     +  VG++LV M
Sbjct: 573 NLFVQLKALCFPKPDDYTYAGIISATGAFPCFSYGKPLHGQVIKAGFVRSVFVGSTLVSM 632

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K+   E A   F S+  KD   +T +IT Y++  +   A++CF +M  E  + +++ L
Sbjct: 633 YFKNQETEAALRVFCSIPGKDAILWTEMITGYSKMADGMGAIRCFSEMHHEVHEIDDYVL 692

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           +  L+ C+ +A L  G ++H  A K G+ ++M VS +L+ MYAK G+++ A  VF   + 
Sbjct: 693 SGVLSVCAYLAILRQGEIIHCYAYKLGYDVEMSVSGSLIDMYAKNGNLEAAYLVFSQVSH 752

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
            D   WN M+GG+  HG+ + AL+ F  ++ +G VPD++TF+ +LSACSH  L+E+GK  
Sbjct: 753 PDLKCWNSMLGGFSHHGMVDDALKLFEEIIKQGLVPDQVTFLSLLSACSHSRLVEQGKLL 812

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK-LTPNALVWENLLGACSWH 536
           ++ +  I G+ P  KH++CM+ +L RA    E E  I ++  +  N  +W  LL AC  +
Sbjct: 813 WNYMSSI-GLVPGPKHYSCMVTLLSRAALLEEAEEIINKSPYVEDNVELWRTLLSACVIN 871

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSW 596
            N+++  + AE++L    +     +  S++ A  GRW++ + +R  +    ++KEP  SW
Sbjct: 872 KNLKVGVRAAEEVLRFNAEDGPTLILLSNLYAAAGRWDEVAEIRRNMKGLIMEKEPGLSW 931

Query: 597 IE 598
           IE
Sbjct: 932 IE 933



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 138/510 (27%), Positives = 253/510 (49%), Gaps = 14/510 (2%)

Query: 49  FSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCA---LDKFLSCSLVDMYSKCGLADNA 105
           FS  + + +LK    +  ++  + +HA+ +    A      FL  +++ MYS+CG  ++A
Sbjct: 277 FSVITDTLLLKKCRITTSLQEARQLHALLLTTTNASGSKSAFLYNNIISMYSRCGSLEDA 336

Query: 106 LKVFYRIKDPDVVAWGAIITCLDQ--QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATT 163
            +VF ++     V++ A++    +  +  C  A  ++  M    ++P+   +TSL++A +
Sbjct: 337 HQVFDKMPQRTHVSYNALLAAYSRVSEQHCVYAFNLYTQMENMGLRPSNMTITSLLQAAS 396

Query: 164 ETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNA 223
             GD   G  +HA   K+GF +D  V  +L++MY     +S    VF  +  +D+V+WN+
Sbjct: 397 LHGDLLIGLLLHAKSLKFGFLNDICVQTSLLNMYSSCMDLSSAESVFCDMNERDNVAWNS 456

Query: 224 LFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS 283
           L   +   +  ++G+ +F +M+  GF P + TF +IL ACS L D   G+ +HA  I  +
Sbjct: 457 LILGYLKNDKIEKGVYLFIEMMWVGFTPTVYTFCMILSACSRLKDYFSGRLIHARVIVGN 516

Query: 284 LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFR 343
           +  +  +  +LVDMY  +G  + A + F  +   DL ++ ++I+ Y +  + E A+  F 
Sbjct: 517 VSPDLHLQNALVDMYCNAGDTQTAYMIFSRMEKWDLVSWNSMISGYFENEDGEKAMNLFV 576

Query: 344 KMR-LEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC 402
           +++ L   K +++T A  ++        + G+ LH   +K G +  +FV + LV+MY K 
Sbjct: 577 QLKALCFPKPDDYTYAGIISATGAFPCFSYGKPLHGQVIKAGFVRSVFVGSTLVSMYFKN 636

Query: 403 GSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVL 462
              + A  VF     +D   W  MI GY K   G  A+  F  M  E +  D+     VL
Sbjct: 637 QETEAALRVFCSIPGKDAILWTEMITGYSKMADGMGAIRCFSEMHHEVHEIDDYVLSGVL 696

Query: 463 SACSHMGLIEEGK-KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTP 521
           S C+++ ++ +G+  H  + K  Y +  ++     +ID+  + G   E    +      P
Sbjct: 697 SVCAYLAILRQGEIIHCYAYKLGYDVEMSVS--GSLIDMYAKNGNL-EAAYLVFSQVSHP 753

Query: 522 NALVWENLLGACSWHGNIELDEKDAEKLLE 551
           +   W ++LG  S HG ++    DA KL E
Sbjct: 754 DLKCWNSMLGGFSHHGMVD----DALKLFE 779



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 175/373 (46%), Gaps = 42/373 (11%)

Query: 223 ALFSRFQDY-----ESPDQGLRIFYQMLLKGFKPNMC----TFIVILKACSSLSDVGFGK 273
           A+ S+ Q+      E  D+ LR  +  + K F   +C    T  ++LK C   + +   +
Sbjct: 242 AMLSKTQELCLSLLEIADKYLR--HACVCKCFMNKLCFSVITDTLLLKKCRITTSLQEAR 299

Query: 274 QLHA---HTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
           QLHA    T   S   +  +  +++ MY + G LEDA   FD +  +   +Y A++ +Y+
Sbjct: 300 QLHALLLTTTNASGSKSAFLYNNIISMYSRCGSLEDAHQVFDKMPQRTHVSYNALLAAYS 359

Query: 331 QAGEAE--MALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLD 388
           +  E     A   + +M   G++ +  T+ S L   S    L  G LLH+ ++K G L D
Sbjct: 360 RVSEQHCVYAFNLYTQMENMGLRPSNMTITSLLQAASLHGDLLIGLLLHAKSLKFGFLND 419

Query: 389 MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
           + V T+L+ MY+ C  +  AE+VF     RD  +WN +I GY+K+   EK +  F  M+ 
Sbjct: 420 ICVQTSLLNMYSSCMDLSSAESVFCDMNERDNVAWNSLILGYLKNDKIEKGVYLFIEMMW 479

Query: 449 EGYVPDEITFVVVLSACSHMGLIEEGKKHFSS----IKKIYG-ITPTIKHFACMIDILGR 503
            G+ P   TF ++LSACS +      K +FS      + I G ++P +     ++D+   
Sbjct: 480 VGFTPTVYTFCMILSACSRL------KDYFSGRLIHARVIVGNVSPDLHLQNALVDMYCN 533

Query: 504 AGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMES----- 558
           AG  T+    I       + + W +++           + +D EK + L  ++++     
Sbjct: 534 AGD-TQTAYMIFSRMEKWDLVSWNSMISG-------YFENEDGEKAMNLFVQLKALCFPK 585

Query: 559 --NYVFPSDISAT 569
             +Y +   ISAT
Sbjct: 586 PDDYTYAGIISAT 598


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 191/599 (31%), Positives = 312/599 (52%), Gaps = 13/599 (2%)

Query: 6   RVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSL-STVLKG--FA 62
           R++++ P  +    N+LL     S    +   LF S       F+  SL S+  +G    
Sbjct: 79  RLYRAFPRPDRFLRNSLL----RSLPTLRADLLFPSPDSFSFAFAATSLASSCSRGGISP 134

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
            S    A + +HA+A+  G A D F++ +L  +Y      ++A KVF  +  PD V W  
Sbjct: 135 PSAASAALRPLHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNT 194

Query: 123 IITCLDQQGCCQEAAKIFNLMRES-SVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           ++  L       EA + F  M  + SV+P+   L S++ A  E  +   G  +HA   K 
Sbjct: 195 LLAGLSGS----EALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKC 250

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G      V   L+S+Y + G +     +F+ +   D V++NAL S +         + +F
Sbjct: 251 GLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELF 310

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +++  G +P+  T + ++   S          LHAH +K  LD N  V T+L  +Y + 
Sbjct: 311 KELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRF 370

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
             ++ A  AFD++  K + ++ A+I+ YAQ G  EMA+  F++M+   ++ N  T++S L
Sbjct: 371 NDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSAL 430

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           + C+ +  L+ G+ +H I       L+++V TAL+ MY KCGSI +A  +F     ++  
Sbjct: 431 SACAQLGALSLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVV 490

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SWN+MI GY  HG G +AL+ ++ M+D    P   TF+ VL ACSH GL++EG   F S+
Sbjct: 491 SWNVMISGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSM 550

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITE-TKLTPNALVWENLLGACSWHGNIE 540
              YGITP I+H  CM+D+LGRAG+  E    I+E  K      +W  LLGAC  H + +
Sbjct: 551 TSDYGITPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGIWGALLGACMVHKDGD 610

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           L +  ++KL ELEP+    YV  S++  ++ ++++ + VR    S+ + K P C+ IE+
Sbjct: 611 LAKLASQKLFELEPENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEI 669



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 119/465 (25%), Positives = 214/465 (46%), Gaps = 12/465 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDM-EKKFSKFSLSTVLKGFA 62
           A++VF ++P  + V WN LL G +    G + +  F  M      +    +L++VL   A
Sbjct: 177 ARKVFDAVPSPDTVLWNTLLAGLS----GSEALEAFVRMAGAGSVRPDSTTLASVLPAAA 232

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
                  G+ VHA   + G A  + +   L+ +Y+KCG  + A  +F R++ PD+V + A
Sbjct: 233 EVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNA 292

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I+     G    + ++F  +    ++P+   L +L+   +  G +     +HA + K G
Sbjct: 293 LISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAG 352

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            +++  V  AL ++Y     +    R F+A+  +   SWNA+ S +      +  + +F 
Sbjct: 353 LDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQ 412

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           QM     +PN  T    L AC+ L  +  GK +H       L+ N  V T+L+DMY K G
Sbjct: 413 QMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIANEKLELNVYVMTALIDMYVKCG 472

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            + +A   FDS+ NK++ ++  +I+ Y   G+   ALK ++ M    +     T  S L 
Sbjct: 473 SIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLY 532

Query: 363 GCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV---FKGSALR 418
            CS    +  G  +  S+    G    +   T +V +  + G + +A  +   F  SA+ 
Sbjct: 533 ACSHGGLVKEGTTVFRSMTSDYGITPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAV- 591

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
               W  ++G  + H  G+ A  A + + +    P+   + V+LS
Sbjct: 592 GPGIWGALLGACMVHKDGDLAKLASQKLFE--LEPENTGYYVLLS 634



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 156/313 (49%), Gaps = 11/313 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A+ +F  M   ++V++NAL++GY+ +G     + LF  +  M  + S  +L  ++  
Sbjct: 272 MECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPV 331

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +  G+      +HA  ++ G   +  +S +L  +Y +    D+A + F  + +  + +W
Sbjct: 332 HSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESW 391

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I+   Q G  + A  +F  M+  +V+PN   ++S + A  + G    G+ +H +I  
Sbjct: 392 NAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIAN 451

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              E +  V  AL+ MY++ G ++    +F+++ +++ VSWN + S +  +    + L++
Sbjct: 452 EKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEALKL 511

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG------TSL 294
           +  M+     P   TF+ +L ACS    V  G      T+  S+  ++ +       T +
Sbjct: 512 YKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGT-----TVFRSMTSDYGITPGIEHCTCM 566

Query: 295 VDMYDKSGCLEDA 307
           VD+  ++G L++A
Sbjct: 567 VDLLGRAGQLKEA 579


>gi|224079788|ref|XP_002305943.1| predicted protein [Populus trichocarpa]
 gi|222848907|gb|EEE86454.1| predicted protein [Populus trichocarpa]
          Length = 693

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 189/599 (31%), Positives = 305/599 (50%), Gaps = 7/599 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A R+F  +   +VVSW  +++   ++G   + + ++  M       ++F   T +K 
Sbjct: 92  IEEACRLFSCVENGDVVSWTTMISSLVQAGKWSQALRIYIDMIKAGVYPNEF---TFVKV 148

Query: 61  FANSGYI--KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
            A +G++  K G+VVHA  I  G  L+  +  +LV MYSKC   D+A+++     + D  
Sbjct: 149 LAAAGFLGLKHGKVVHAHLIVFGVELNLVVKTALVHMYSKCQRMDDAVRISKLTPESDRF 208

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            W AI++ L Q    +EA   F  M  S +  N F   S++ A +       G  IHA +
Sbjct: 209 LWTAILSGLAQNLKLREAVVAFQEMEASGILSNNFTYLSILNACSLILSLDLGRQIHARV 268

Query: 179 CKYGFESDTLVGNALVSMYME-NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
              G E D  VGNALV MYM+ +  V  G RVFE I   D +SW +L +   ++      
Sbjct: 269 IMAGLEDDIPVGNALVDMYMKCSHEVEDGLRVFEGIESPDVISWTSLIAGLSEHGFHQGS 328

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
              + +M   G +PN  T  +IL++C +        +LH H IK + D +  V  +LVD 
Sbjct: 329 FDSYMEMTASGLQPNSVTLSIILRSCRAAKSASQLLKLHGHVIKTNADHDIAVSNALVDA 388

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y  +  ++DA     +++ +D   YT + T   Q G  EMAL     M  + IK + +++
Sbjct: 389 YAGNERVDDAWHLIRNMSQRDALTYTGLATRLNQMGHHEMALHVINHMFNDDIKMDGYSM 448

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           A  L+  + + ++  G  LHS +VK+G    + VS  LV+ Y KCG   DAE  F     
Sbjct: 449 AGFLSASAGLNSVETGMQLHSYSVKSGLGSSISVSNGLVSFYGKCGLTRDAERAFAEIRE 508

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
            D  SWN +I     +G    AL AF  M   G  PD +TF++VL  C+H GL++ G ++
Sbjct: 509 PDIVSWNGLISVLASYGHISSALSAFDDMRLTGVKPDSVTFLLVLFTCTHCGLVDMGLEY 568

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F+S+K+++GI P + H+ C+ D+LGRAG+  E    +    + PNA +++ LL AC  H 
Sbjct: 569 FNSMKEMHGIEPQLDHYVCLFDLLGRAGRLEEAMEILETMPIRPNASIYKTLLAACKVHR 628

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSW 596
            + L E  A + L+L+P   +  +  +++  + GR +  + +R  +  +G    P  SW
Sbjct: 629 IVPLGEDIASRGLKLDPSDPAFNLMLANLYDSSGRPDLAATIRRSVRDKG-SSLPQRSW 686



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 147/548 (26%), Positives = 263/548 (47%), Gaps = 8/548 (1%)

Query: 11  MPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAG 70
           MP  +VVSW  +L+ Y +    ++ + +F  M       ++F+ S+VL+  +  G    G
Sbjct: 1   MPSRDVVSWTGILSAYVKHEKHEEALGMFQEMMGSGPCPNEFTFSSVLRACSALGEFSDG 60

Query: 71  QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
           + +H   I+ G   ++ L   L+D+YSK G  + A ++F  +++ DVV+W  +I+ L Q 
Sbjct: 61  KCIHGCVIKHGFESNQILGSVLIDLYSKYGSIEEACRLFSCVENGDVVSWTTMISSLVQA 120

Query: 131 GCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVG 190
           G   +A +I+  M ++ V PN+F    ++ A    G +  G+ +HA +  +G E + +V 
Sbjct: 121 GKWSQALRIYIDMIKAGVYPNEFTFVKVLAAAGFLGLKH-GKVVHAHLIVFGVELNLVVK 179

Query: 191 NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFK 250
            ALV MY +  R+    R+ +     D   W A+ S         + +  F +M   G  
Sbjct: 180 TALVHMYSKCQRMDDAVRISKLTPESDRFLWTAILSGLAQNLKLREAVVAFQEMEASGIL 239

Query: 251 PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK-SGCLEDAGV 309
            N  T++ IL ACS +  +  G+Q+HA  I   L+ +  VG +LVDMY K S  +ED   
Sbjct: 240 SNNFTYLSILNACSLILSLDLGRQIHARVIMAGLEDDIPVGNALVDMYMKCSHEVEDGLR 299

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369
            F+ + + D+ ++T++I   ++ G  + +   + +M   G++ N  TL+  L  C    +
Sbjct: 300 VFEGIESPDVISWTSLIAGLSEHGFHQGSFDSYMEMTASGLQPNSVTLSIILRSCRAAKS 359

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
            +    LH   +KT    D+ VS ALV  YA    +DDA  + +  + RD  ++  +   
Sbjct: 360 ASQLLKLHGHVIKTNADHDIAVSNALVDAYAGNERVDDAWHLIRNMSQRDALTYTGLATR 419

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGIT 488
             + G  E AL     M ++    D  +    LSA + +  +E G + H  S+K   G+ 
Sbjct: 420 LNQMGHHEMALHVINHMFNDDIKMDGYSMAGFLSASAGLNSVETGMQLHSYSVKS--GLG 477

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE--LDEKDA 546
            +I     ++   G+ G   + E    E +  P+ + W  L+   + +G+I   L   D 
Sbjct: 478 SSISVSNGLVSFYGKCGLTRDAERAFAEIR-EPDIVSWNGLISVLASYGHISSALSAFDD 536

Query: 547 EKLLELEP 554
            +L  ++P
Sbjct: 537 MRLTGVKP 544



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 132/258 (51%), Gaps = 10/258 (3%)

Query: 314 LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG 373
           + ++D+ ++T I+++Y +  + E AL  F++M   G   NEFT +S L  CS +   ++G
Sbjct: 1   MPSRDVVSWTGILSAYVKHEKHEEALGMFQEMMGSGPCPNEFTFSSVLRACSALGEFSDG 60

Query: 374 RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKH 433
           + +H   +K G   +  + + L+ +Y+K GSI++A  +F      D  SW  MI   V+ 
Sbjct: 61  KCIHGCVIKHGFESNQILGSVLIDLYSKYGSIEEACRLFSCVENGDVVSWTTMISSLVQA 120

Query: 434 GLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKH 493
           G   +AL  +  M+  G  P+E TFV VL+A   +GL      H   I  ++G+   +  
Sbjct: 121 GKWSQALRIYIDMIKAGVYPNEFTFVKVLAAAGFLGLKHGKVVHAHLI--VFGVELNLVV 178

Query: 494 FACMIDILGRAGKFTEIENFITETKLTPNA--LVWENLLGACSWHGNIELDEK-DAEKLL 550
              ++ +  +  +   +++ +  +KLTP +   +W  +L   +   N++L E   A + +
Sbjct: 179 KTALVHMYSKCQR---MDDAVRISKLTPESDRFLWTAILSGLAQ--NLKLREAVVAFQEM 233

Query: 551 ELEPKMESNYVFPSDISA 568
           E    + +N+ + S ++A
Sbjct: 234 EASGILSNNFTYLSILNA 251


>gi|449529626|ref|XP_004171799.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g04860-like [Cucumis sativus]
          Length = 704

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 187/596 (31%), Positives = 294/596 (49%), Gaps = 9/596 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R+F   PE +VVSWNAL++GY   G+      LF  M+  E    + +L +++     
Sbjct: 117 AQRLFDDFPEKDVVSWNALISGYTRCGNSHDAFKLFVEMRRREFDPCQRTLVSLMPSCGT 176

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G+ +H + ++ G  LD  +  +LV MY KC   D    +F  I +  VV+W  +
Sbjct: 177 QQLFVQGKSIHGLGVKAGLDLDSQVKNALVSMYGKCADLDGVKLLFGEITEKSVVSWNTM 236

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q G   EA  +F  M E SV  N   + S++ A   TG       IH    K G 
Sbjct: 237 IGAFGQNGLFSEAMLVFKQMLEESVNANSVTMVSILSANANTG------CIHCYATKIGL 290

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             +  V  +LV  Y++ G +     ++ +   ++ V+  A+ S + +       +R++  
Sbjct: 291 VENVSVVTSLVCSYVKCGYIELAELIYMSKLKKNLVALTAIISHYAEKGDMGSVVRLYSI 350

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           +     K +    + I++  +    +G G   H + +K  L  + +V    + MY K   
Sbjct: 351 VQHLDMKLDAVAMVGIIQGFTYPDHIGIGLAFHGYGVKSGLIIDCLVANGFISMYSKFDN 410

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++     F  +  K L ++ ++I+S AQAG +  A+  F +M L G   +  TLAS L+ 
Sbjct: 411 IDAVFSLFQEMHKKTLSSWNSVISSCAQAGRSIDAMALFSQMTLSGYGPDSITLASLLSA 470

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C     L  G +LH   ++    L+ FV TALV MY KCG +D AE VFK       ASW
Sbjct: 471 CCQNGNLHFGEILHCYILRNNLDLEGFVGTALVDMYVKCGRMDFAENVFKSMKEPCLASW 530

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +I GY   G    AL  +  M+++G  P++ITF  +L+AC+H GL+EEG+K+F  +KK
Sbjct: 531 NSLISGYGLFGFHNHALLCYTEMMEKGIKPNKITFSGILAACTHGGLVEEGRKYFKIMKK 590

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            +GI P  +H A M+ +LGRAG F E   FI   +  P++ VW  LL AC  H  ++L E
Sbjct: 591 KFGIVPESQHCASMVGMLGRAGLFEEAIVFIQNMETNPDSAVWGALLSACCIHQEVKLGE 650

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
             A+KL          +V  S++ A   RWND + +R ++   G   E  CS + +
Sbjct: 651 SVAKKLFFSNCSNGGFFVLMSNLYAASRRWNDVARIRKMMREMG---EDGCSGVSL 703



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 131/454 (28%), Positives = 210/454 (46%), Gaps = 18/454 (3%)

Query: 83  ALDKFL--SCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIF 140
             D+FL  S + +D+YSK G    A ++F    + DVV+W A+I+   + G   +A K+F
Sbjct: 93  GFDQFLYVSTAFLDLYSKLGFVKAAQRLFDDFPEKDVVSWNALISGYTRCGNSHDAFKLF 152

Query: 141 NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMEN 200
             MR     P Q  L SL+ +         G+SIH +  K G + D+ V NALVSMY + 
Sbjct: 153 VEMRRREFDPCQRTLVSLMPSCGTQQLFVQGKSIHGLGVKAGLDLDSQVKNALVSMYGKC 212

Query: 201 GRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVIL 260
             +     +F  I  +  VSWN +   F       + + +F QML +    N  T + IL
Sbjct: 213 ADLDGVKLLFGEITEKSVVSWNTMIGAFGQNGLFSEAMLVFKQMLEESVNANSVTMVSIL 272

Query: 261 KACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLF 320
            A ++   +      H +  K  L  N  V TSLV  Y K G +E A + + S   K+L 
Sbjct: 273 SANANTGCI------HCYATKIGLVENVSVVTSLVCSYVKCGYIELAELIYMSKLKKNLV 326

Query: 321 AYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIA 380
           A TAII+ YA+ G+    ++ +  ++   +K +   +   + G +    +  G   H   
Sbjct: 327 ALTAIISHYAEKGDMGSVVRLYSIVQHLDMKLDAVAMVGIIQGFTYPDHIGIGLAFHGYG 386

Query: 381 VKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKAL 440
           VK+G ++D  V+   ++MY+K  +ID   ++F+    +  +SWN +I    + G    A+
Sbjct: 387 VKSGLIIDCLVANGFISMYSKFDNIDAVFSLFQEMHKKTLSSWNSVISSCAQAGRSIDAM 446

Query: 441 EAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT--IKHF--AC 496
             F  M   GY PD IT   +LSAC      + G  HF  I   Y +     ++ F    
Sbjct: 447 ALFSQMTLSGYGPDSITLASLLSACC-----QNGNLHFGEILHCYILRNNLDLEGFVGTA 501

Query: 497 MIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
           ++D+  + G+    EN     K  P    W +L+
Sbjct: 502 LVDMYVKCGRMDFAENVFKSMK-EPCLASWNSLI 534



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 133/278 (47%), Gaps = 18/278 (6%)

Query: 212 AIAHQDSVSWNALFSRFQDY---ESPDQGLRIFYQMLLKGFKPNMCTFIVILKA------ 262
           ++ H  ++S     S F+ Y   +     L +F ++L    KPN  TF +++KA      
Sbjct: 6   SVGHPATLSLTTFHSAFKFYVEGKCFTPPLLLFRELLRHRVKPNDSTFSLLIKAFVVSSS 65

Query: 263 --------CSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
                   CS  ++     QL  H IK   D    V T+ +D+Y K G ++ A   FD  
Sbjct: 66  TSSFAPSFCSE-NEKAEANQLQTHFIKWGFDQFLYVSTAFLDLYSKLGFVKAAQRLFDDF 124

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
             KD+ ++ A+I+ Y + G +  A K F +MR       + TL S +  C        G+
Sbjct: 125 PEKDVVSWNALISGYTRCGNSHDAFKLFVEMRRREFDPCQRTLVSLMPSCGTQQLFVQGK 184

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
            +H + VK G  LD  V  ALV+MY KC  +D  + +F     +   SWN MIG + ++G
Sbjct: 185 SIHGLGVKAGLDLDSQVKNALVSMYGKCADLDGVKLLFGEITEKSVVSWNTMIGAFGQNG 244

Query: 435 LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE 472
           L  +A+  F+ ML+E    + +T V +LSA ++ G I 
Sbjct: 245 LFSEAMLVFKQMLEESVNANSVTMVSILSANANTGCIH 282



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 107/459 (23%), Positives = 194/459 (42%), Gaps = 54/459 (11%)

Query: 132 CCQEAAKIFNLMRESSVKPNQFVLTSLVRA------TTETGDQRCGES-------IHAVI 178
           C      +F  +    VKPN    + L++A      T+      C E+       +    
Sbjct: 30  CFTPPLLLFRELLRHRVKPNDSTFSLLIKAFVVSSSTSSFAPSFCSENEKAEANQLQTHF 89

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K+GF+    V  A + +Y + G V    R+F+    +D VSWNAL S +    +     
Sbjct: 90  IKWGFDQFLYVSTAFLDLYSKLGFVKAAQRLFDDFPEKDVVSWNALISGYTRCGNSHDAF 149

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           ++F +M  + F P   T + ++ +C +      GK +H   +K  LD +  V  +LV MY
Sbjct: 150 KLFVEMRRREFDPCQRTLVSLMPSCGTQQLFVQGKSIHGLGVKAGLDLDSQVKNALVSMY 209

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K   L+   + F  +  K + ++  +I ++ Q G    A+  F++M  E + +N  T+ 
Sbjct: 210 GKCADLDGVKLLFGEITEKSVVSWNTMIGAFGQNGLFSEAMLVFKQMLEESVNANSVTMV 269

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L+        AN   +H  A K G + ++ V T+LV  Y KCG I+ AE ++     +
Sbjct: 270 SILSAN------ANTGCIHCYATKIGLVENVSVVTSLVCSYVKCGYIELAELIYMSKLKK 323

Query: 419 DTASWNMMIGGYVKHG-LGE-----KALEAFRMMLD--------EGYV-PDEITF----- 458
           +  +   +I  Y + G +G        ++   M LD        +G+  PD I       
Sbjct: 324 NLVALTAIISHYAEKGDMGSVVRLYSIVQHLDMKLDAVAMVGIIQGFTYPDHIGIGLAFH 383

Query: 459 ------VVVLSACSHMGLIEEGKKHFSSIKKIYGI-----TPTIKHFACMIDILGRAGKF 507
                  +++      G I    K F +I  ++ +       T+  +  +I    +AG+ 
Sbjct: 384 GYGVKSGLIIDCLVANGFISMYSK-FDNIDAVFSLFQEMHKKTLSSWNSVISSCAQAGRS 442

Query: 508 TEIENFITETKLT---PNALVWENLLGACSWHGNIELDE 543
            +     ++  L+   P+++   +LL AC  +GN+   E
Sbjct: 443 IDAMALFSQMTLSGYGPDSITLASLLSACCQNGNLHFGE 481


>gi|357116286|ref|XP_003559913.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 692

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 174/599 (29%), Positives = 308/599 (51%), Gaps = 5/599 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLKGFA 62
           A  V   MP  N  +WNA + G  +SG   + +  + +M +D       F+   V+K  A
Sbjct: 94  ALSVLDGMPMRNSFAWNAAIKGLVDSGQFAEALETYWAMVRDGSVAADGFTYPPVIKACA 153

Query: 63  NSGYIKAGQVVH----AMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
             G ++ G++V     A  +R   A   F+ C+LVDM++KCG    A  VF  + + D+ 
Sbjct: 154 ALGVVEQGRMVRENVEADVVRGVVAPSVFVQCALVDMFAKCGCLGEARSVFESMLERDLA 213

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           AW A+I      G   +A  +F+ MR      +  ++ +++ A     + R G  +H   
Sbjct: 214 AWTAMIGGAVHAGDWLDAMSLFSRMRSEGFLADSVIIATVIPACGRAKELRTGMVLHGCA 273

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            + G   DT V NALV MY + G +    RVF +I  +D VSW+ L + +         +
Sbjct: 274 VRCGVGDDTCVSNALVDMYCKCGCLGMADRVFWSIGFKDVVSWSTLIAGYSQNGKDHVSV 333

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            +F +M+  G KPN  T   IL + S +     GK++H  ++++  D +  +G++ +D Y
Sbjct: 334 NLFTEMVTAGLKPNSNTMASILPSLSEMKLFRHGKEIHGFSLRNGFDQSKFLGSAFIDFY 393

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            + G + +A +  + +  +DL  + +++  YA  G  + AL  FR ++  G + +  T+ 
Sbjct: 394 SRQGSIREAEIVLELMPKRDLVIWNSMVAGYAVNGNTDSALCAFRALQKVGFRPDHVTVV 453

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L  C+  + L  G+ LH+  V+        VS AL+ MY KC  ++  + +F+    R
Sbjct: 454 SVLPVCNHHSRLIQGKELHAYVVRHYMSSVCSVSNALIDMYCKCCCLEKGKEIFQLVTDR 513

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           DTA++N +I  + KHG  ++A+  F +M  +G  PD++TFV +LS+CSH GLIE+G   +
Sbjct: 514 DTATYNTLISSFGKHGHEDEAIMLFDLMKRDGIAPDKVTFVALLSSCSHAGLIEKGLHFY 573

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
             + + Y I+P  +H++C++D+  R+GK  +   F++  +      V   LLGAC  H  
Sbjct: 574 DIMLQDYNISPGKEHYSCVVDLYSRSGKLDDAWKFVSSLQDEAEIDVLGCLLGACRVHNR 633

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           +++ E  A+++ E  P     ++  S+I A  G W+  + +R ++ ++ +K +   S I
Sbjct: 634 MDIAELVAKRIFEQNPSDPGYHILLSNIYANAGMWSHVTRIRTMIENRSLKNKTGNSLI 692



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 153/318 (48%), Gaps = 5/318 (1%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           +A RVF S+   +VVSW+ L+ GY+++G     ++LF  M     K +  +++++L   +
Sbjct: 300 MADRVFWSIGFKDVVSWSTLIAGYSQNGKDHVSVNLFTEMVTAGLKPNSNTMASILPSLS 359

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
                + G+ +H  ++R G    KFL  + +D YS+ G    A  V   +   D+V W +
Sbjct: 360 EMKLFRHGKEIHGFSLRNGFDQSKFLGSAFIDFYSRQGSIREAEIVLELMPKRDLVIWNS 419

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           ++      G    A   F  +++   +P+   + S++           G+ +HA + ++ 
Sbjct: 420 MVAGYAVNGNTDSALCAFRALQKVGFRPDHVTVVSVLPVCNHHSRLIQGKELHAYVVRHY 479

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
             S   V NAL+ MY +   +  G  +F+ +  +D+ ++N L S F  +   D+ + +F 
Sbjct: 480 MSSVCSVSNALIDMYCKCCCLEKGKEIFQLVTDRDTATYNTLISSFGKHGHEDEAIMLFD 539

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTI---KHSLDGNHVVGTSLVDMYD 299
            M   G  P+  TF+ +L +CS    +   K LH + I    +++       + +VD+Y 
Sbjct: 540 LMKRDGIAPDKVTFVALLSSCSHAGLI--EKGLHFYDIMLQDYNISPGKEHYSCVVDLYS 597

Query: 300 KSGCLEDAGVAFDSLANK 317
           +SG L+DA     SL ++
Sbjct: 598 RSGKLDDAWKFVSSLQDE 615



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 6/175 (3%)

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTA-LVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
           TLA  R LH+  +  GH     V  A LV  YA+ G    A +V  G  +R++ +WN  I
Sbjct: 54  TLAEARRLHAALLVGGHHRRGAVLAAQLVHAYARLGEAGRALSVLDGMPMRNSFAWNAAI 113

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYV-PDEITFVVVLSACSHMGLIEEGKKHFSSIKK--I 484
            G V  G   +ALE +  M+ +G V  D  T+  V+ AC+ +G++E+G+    +++   +
Sbjct: 114 KGLVDSGQFAEALETYWAMVRDGSVAADGFTYPPVIKACAALGVVEQGRMVRENVEADVV 173

Query: 485 YGIT-PTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            G+  P++     ++D+  + G   E  + + E+ L  +   W  ++G     G+
Sbjct: 174 RGVVAPSVFVQCALVDMFAKCGCLGEARS-VFESMLERDLAAWTAMIGGAVHAGD 227


>gi|449496714|ref|XP_004160205.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g11290-like [Cucumis sativus]
          Length = 616

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 168/530 (31%), Positives = 282/530 (53%), Gaps = 2/530 (0%)

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
           G  VH+  I+LG +L+ ++  +LVDMY KC    +A KVF  +  P VV W +++T   Q
Sbjct: 87  GIQVHSTIIKLGFSLNPYIFTALVDMYGKCWSISDAHKVFDEMSCPSVVTWNSLVTGYLQ 146

Query: 130 QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
            G    A  +F  M +  ++P  F L+  +   ++      G  +HA+  K  F S+ +V
Sbjct: 147 AGYPLMAVSLFLEMLKKGIEPTPFSLSGGLVGCSQLQKGDLGSQLHAMSLKLRFSSNVVV 206

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
           G  L+ MY +   +    RVF+ + +++  +W ++ S +   + P + + +  +ML    
Sbjct: 207 GTGLIDMYSKCCNLQDSRRVFDIMLNKNVFTWTSMISGYARNQLPHEAMXLMREMLHLNL 266

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS-GCLEDAG 308
           +PN  T+  +L + S        KQ+H   I    + N+ +  +LV  Y +  G LED  
Sbjct: 267 EPNGMTYNSLLSSFSCPRHFDKCKQIHCRIITEGYESNNYIAVTLVTAYSECCGSLEDYR 326

Query: 309 VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA 368
               ++   D  ++ A+I  +   G  E AL+CF +MR E    + FT  S        +
Sbjct: 327 KVCSNIRMSDQISWNAVIAGFTNLGIGEEALECFIQMRREKFDVDFFTFTSIFKAIGMTS 386

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
            L  G+ +H +  KTG+ L++ V   LV+MYA+ G+I D++ VF      D  SWN ++ 
Sbjct: 387 ALEEGKQIHGLVYKTGYTLNLSVQNGLVSMYARSGAIRDSKMVFSMMNEHDLISWNSLLS 446

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGI- 487
           G   HG GE+A++ F  M      PD  +F+ VL+ACSH+GL+++G ++F  ++    + 
Sbjct: 447 GCAYHGCGEEAIDLFEKMRRTCIKPDNTSFLAVLTACSHVGLLDKGLEYFKLMRNSELVE 506

Query: 488 TPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAE 547
            P ++H+A ++D+ GRAGK  E E FI    + P   +++ LL AC  HGN ++  + A+
Sbjct: 507 PPKLEHYATLVDLFGRAGKLYEAEAFIESIPIEPGISIYKALLSACLIHGNKDIAIRTAK 566

Query: 548 KLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           KLLEL P   + Y+  S+     G W+D + +R L+S++G+KKEP  SW+
Sbjct: 567 KLLELYPYDPATYIMLSNALGRDGYWDDAASIRRLMSNRGVKKEPGFSWM 616



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/433 (28%), Positives = 206/433 (47%), Gaps = 17/433 (3%)

Query: 139 IFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYM 198
           +  L+R  S  P   +LT  +   T++     G  +H+ I K GF  +  +  ALV MY 
Sbjct: 56  LVQLLRHGS-PPTPPILTKTISICTKSTLLDFGIQVHSTIIKLGFSLNPYIFTALVDMYG 114

Query: 199 ENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIV 258
           +   +S   +VF+ ++    V+WN+L + +     P   + +F +ML KG +P   +   
Sbjct: 115 KCWSISDAHKVFDEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEPTPFSLSG 174

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKD 318
            L  CS L     G QLHA ++K     N VVGT L+DMY K   L+D+   FD + NK+
Sbjct: 175 GLVGCSQLQKGDLGSQLHAMSLKLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDIMLNKN 234

Query: 319 LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHS 378
           +F +T++I+ YA+      A+   R+M    ++ N  T  S L+  S        + +H 
Sbjct: 235 VFTWTSMISGYARNQLPHEAMXLMREMLHLNLEPNGMTYNSLLSSFSCPRHFDKCKQIHC 294

Query: 379 IAVKTGHLLDMFVSTALVAMYAK-CGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGE 437
             +  G+  + +++  LV  Y++ CGS++D   V     + D  SWN +I G+   G+GE
Sbjct: 295 RIITEGYESNNYIAVTLVTAYSECCGSLEDYRKVCSNIRMSDQISWNAVIAGFTNLGIGE 354

Query: 438 KALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACM 497
           +ALE F  M  E +  D  TF  +  A      +EEGK+    + K  G T  +     +
Sbjct: 355 EALECFIQMRREKFDVDFFTFTSIFKAIGMTSALEEGKQIHGLVYKT-GYTLNLSVQNGL 413

Query: 498 IDILGRAGKFTE---IENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEP 554
           + +  R+G   +   + + + E  L    + W +LL  C++HG         E+ ++L  
Sbjct: 414 VSMYARSGAIRDSKMVFSMMNEHDL----ISWNSLLSGCAYHGC-------GEEAIDLFE 462

Query: 555 KMESNYVFPSDIS 567
           KM    + P + S
Sbjct: 463 KMRRTCIKPDNTS 475



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 129/487 (26%), Positives = 230/487 (47%), Gaps = 13/487 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A +VF  M   +VV+WN+L+ GY ++G     + LF  M     + + FSLS  L G + 
Sbjct: 122 AHKVFDEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEPTPFSLSGGLVGCSQ 181

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                 G  +HAM+++L  + +  +   L+DMYSKC    ++ +VF  + + +V  W ++
Sbjct: 182 LQKGDLGSQLHAMSLKLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDIMLNKNVFTWTSM 241

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   +     EA  +   M   +++PN     SL+ + +        + IH  I   G+
Sbjct: 242 ISGYARNQLPHEAMXLMREMLHLNLEPNGMTYNSLLSSFSCPRHFDKCKQIHCRIITEGY 301

Query: 184 ESDTLVGNALVSMYME-NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           ES+  +   LV+ Y E  G +    +V   I   D +SWNA+ + F +    ++ L  F 
Sbjct: 302 ESNNYIAVTLVTAYSECCGSLEDYRKVCSNIRMSDQISWNAVIAGFTNLGIGEEALECFI 361

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           QM  + F  +  TF  I KA    S +  GKQ+H    K     N  V   LV MY +SG
Sbjct: 362 QMRREKFDVDFFTFTSIFKAIGMTSALEEGKQIHGLVYKTGYTLNLSVQNGLVSMYARSG 421

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            + D+ + F  +   DL ++ ++++  A  G  E A+  F KMR   IK +  +  + L 
Sbjct: 422 AIRDSKMVFSMMNEHDLISWNSLLSGCAYHGCGEEAIDLFEKMRRTCIKPDNTSFLAVLT 481

Query: 363 GCSPVATLANG----RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
            CS V  L  G    +L+ +  +     L+ + +  LV ++ + G + +AEA  +   + 
Sbjct: 482 ACSHVGLLDKGLEYFKLMRNSELVEPPKLEHYAT--LVDLFGRAGKLYEAEAFIESIPIE 539

Query: 419 DTAS-WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
              S +  ++   + HG  + A+   + +L E Y  D  T++++ +A    G  ++    
Sbjct: 540 PGISIYKALLSACLIHGNKDIAIRTAKKLL-ELYPYDPATYIMLSNALGRDGYWDDA--- 595

Query: 478 FSSIKKI 484
            +SI+++
Sbjct: 596 -ASIRRL 601



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 133/272 (48%), Gaps = 12/272 (4%)

Query: 214 AHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGK 273
            H + VS   L    Q +   D  ++   Q+L  G  P        +  C+  + + FG 
Sbjct: 34  THSEDVSIKPLL---QTHNVVD--IQFLVQLLRHGSPPTPPILTKTISICTKSTLLDFGI 88

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
           Q+H+  IK     N  + T+LVDMY K   + DA   FD ++   +  + +++T Y QAG
Sbjct: 89  QVHSTIIKLGFSLNPYIFTALVDMYGKCWSISDAHKVFDEMSCPSVVTWNSLVTGYLQAG 148

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST 393
              MA+  F +M  +GI+   F+L+  L GCS +     G  LH++++K     ++ V T
Sbjct: 149 YPLMAVSLFLEMLKKGIEPTPFSLSGGLVGCSQLQKGDLGSQLHAMSLKLRFSSNVVVGT 208

Query: 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP 453
            L+ MY+KC ++ D+  VF     ++  +W  MI GY ++ L  +A+   R ML     P
Sbjct: 209 GLIDMYSKCCNLQDSRRVFDIMLNKNVFTWTSMISGYARNQLPHEAMXLMREMLHLNLEP 268

Query: 454 DEITFVVVLSACSHMGLIEEGKKHFSSIKKIY 485
           + +T+  +LS+ S         +HF   K+I+
Sbjct: 269 NGMTYNSLLSSFS-------CPRHFDKCKQIH 293



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 87/166 (52%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E  ++V  ++   + +SWNA++ G+   G G++ +  F  M+  +     F+ +++ K 
Sbjct: 322 LEDYRKVCSNIRMSDQISWNAVIAGFTNLGIGEEALECFIQMRREKFDVDFFTFTSIFKA 381

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              +  ++ G+ +H +  + G  L+  +   LV MY++ G   ++  VF  + + D+++W
Sbjct: 382 IGMTSALEEGKQIHGLVYKTGYTLNLSVQNGLVSMYARSGAIRDSKMVFSMMNEHDLISW 441

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
            ++++     GC +EA  +F  MR + +KP+     +++ A +  G
Sbjct: 442 NSLLSGCAYHGCGEEAIDLFEKMRRTCIKPDNTSFLAVLTACSHVG 487


>gi|297735121|emb|CBI17483.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 163/511 (31%), Positives = 276/511 (54%), Gaps = 9/511 (1%)

Query: 98  KCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMR-ESSVKPNQFVLT 156
           K G   NA ++F ++   D ++W  +I+         EA  +F  MR ES ++ + F+L+
Sbjct: 68  KTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILS 127

Query: 157 SLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ 216
              +A     D   GE +H    K G  +   VG+AL+ MY +NG++  G RVF  +  +
Sbjct: 128 LAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMR 187

Query: 217 DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLH 276
           + VSW A+ +         + L  F +M     + +  TF + LKAC+    + +G+++H
Sbjct: 188 NVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIH 247

Query: 277 AHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAE 336
           A  +K   D +  V  +L  MY+K G LE     F+ ++ +D+ ++T IIT+  Q G+ E
Sbjct: 248 AQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEE 307

Query: 337 MALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALV 396
            A++ F +MR   +  NE+T A+ ++GC+ +A +  G  LH++ +  G    + V  +++
Sbjct: 308 CAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIM 367

Query: 397 AMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI 456
            MYAKCG +  +  +F     RD  SW+ +I GY + G   +A E    M  EG  P E 
Sbjct: 368 TMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEF 427

Query: 457 TFVVVLSACSHMGLIEEGKKHFSSIKKI--------YGITPTIKHFACMIDILGRAGKFT 508
               VLSAC +M ++E GK+  + +  I        Y I+P+ +H+ CMID+L RAG+ +
Sbjct: 428 ALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMKYQISPSKEHYGCMIDLLCRAGRLS 487

Query: 509 EIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISA 568
           + E+ I       + +VW  LL AC  HG++E   + AE++L+LEP     ++  ++I A
Sbjct: 488 DAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYA 547

Query: 569 TQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           ++G+W + + +R L+ S+G+ KEP  SWI+V
Sbjct: 548 SKGKWREAADIRKLMKSKGVIKEPGWSWIKV 578



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 127/446 (28%), Positives = 225/446 (50%), Gaps = 11/446 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMK-DMEKKFSKFSLSTVLKGFA 62
           A+R+F  M + + +SW  L++GY  + D  + + LF +M+ +   +   F LS   K   
Sbjct: 75  ARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKACG 134

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
            +  +  G+++H  A++ G     F+  +L+DMY+K G      +VF+ +   +VV+W A
Sbjct: 135 LNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTA 194

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           IIT L + G  +EA   F+ M  S V+ + +     ++A  ++G    G  IHA   K G
Sbjct: 195 IITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKG 254

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F+  + V N L +MY + G++ YG  +FE ++ +D VSW  + +        +  ++ F 
Sbjct: 255 FDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFI 314

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M      PN  TF  ++  C++L+ + +G+QLHA  +   L  +  V  S++ MY K G
Sbjct: 315 RMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCG 374

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            L  + V F  +  +D+ +++ II  Y+Q G    A +    MR+EG K  EF LAS L+
Sbjct: 375 QLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLS 434

Query: 363 GCSPVATLANGRLLHSIAVKTG---HLLDMFVSTA------LVAMYAKCGSIDDAEAVFK 413
            C  +A L +G+ LH+  +  G     +   +S +      ++ +  + G + DAE + +
Sbjct: 435 ACGNMAILEHGKQLHAYVLSIGLEHTAMKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIE 494

Query: 414 GSAL-RDTASWNMMIGGYVKHGLGEK 438
                RD   W+ ++     HG  E+
Sbjct: 495 AMPFHRDDVVWSTLLRACRVHGDVER 520



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 188/377 (49%), Gaps = 8/377 (2%)

Query: 164 ETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNA 223
           E  +    ++IH +      ++D    N  +   ++ G +    R+F+ ++ +D +SW  
Sbjct: 38  ERSNDNLSQNIHFI-----SQTDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTT 92

Query: 224 LFSRFQDYESPDQGLRIFYQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKH 282
           L S + +     + L +F  M ++ G + +     +  KAC   SDV +G+ LH + +K 
Sbjct: 93  LISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKT 152

Query: 283 SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCF 342
            L  +  VG++L+DMY K+G + +    F  +  +++ ++TAIIT   +AG  + AL  F
Sbjct: 153 GLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYF 212

Query: 343 RKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC 402
            +M    ++ + +T A  L  C+    L  GR +H+ A+K G  +  FV+  L  MY KC
Sbjct: 213 SEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKC 272

Query: 403 GSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVL 462
           G ++    +F+  ++RD  SW  +I   V+ G  E A++AF  M +    P+E TF  V+
Sbjct: 273 GKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVI 332

Query: 463 SACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPN 522
           S C+++  IE G++  + I  + G+  ++     ++ +  + G+ T   + I       +
Sbjct: 333 SGCANLARIEWGEQLHALILHL-GLAASLSVENSIMTMYAKCGQLTS-SSVIFHEMTRRD 390

Query: 523 ALVWENLLGACSWHGNI 539
            + W  ++   S  G++
Sbjct: 391 IVSWSTIIAGYSQGGHV 407



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 124/262 (47%), Gaps = 12/262 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E    +F+ M   +VVSW  ++    + G  +  +  F  M++ +   ++++ + V+ G
Sbjct: 275 LEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISG 334

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            AN   I+ G+ +HA+ + LG A    +  S++ MY+KCG   ++  +F+ +   D+V+W
Sbjct: 335 CANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSW 394

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             II    Q G   EA ++ + MR    KP +F L S++ A         G+ +HA +  
Sbjct: 395 STIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLS 454

Query: 181 YGFESDTLVGN---------ALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALFSRFQD 230
            G E   +             ++ +    GR+S    + EA+  H+D V W+ L    + 
Sbjct: 455 IGLEHTAMKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRV 514

Query: 231 YESPDQGLRIFYQMLLKGFKPN 252
           +   ++G R   ++L    +PN
Sbjct: 515 HGDVERGRRTAERIL--QLEPN 534


>gi|356497951|ref|XP_003517819.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial-like [Glycine max]
          Length = 828

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 187/598 (31%), Positives = 298/598 (49%), Gaps = 3/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF  +   ++VSW++++  Y E+G  ++ + +   M          ++ +V +    
Sbjct: 156 ARKVFDEIRVRDLVSWSSVVACYVENGRPREGLEMLRWMVSEGVGPDSVTMLSVAEACGK 215

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G ++  + VH   IR   A D  L  SL+ MY +C     A  +F  + DP    W ++
Sbjct: 216 VGCLRLAKSVHGYVIRKEMAGDASLRNSLIVMYGQCSYLRGAKGMFESVSDPSTACWTSM 275

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+  +Q GC +EA   F  M+ES V+ N   + S++      G  + G+S+H  I +   
Sbjct: 276 ISSCNQNGCFEEAIDAFKKMQESEVEVNAVTMISVLCCCARLGWLKEGKSVHCFILRREM 335

Query: 184 E-SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           + +D  +G AL+  Y    ++S   ++   I +   VSWN L S +      ++ + +F 
Sbjct: 336 DGADLDLGPALMDFYAACWKISSCEKLLCLIGNSSVVSWNTLISIYAREGLNEEAMVLFV 395

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            ML KG  P+  +    + AC+  S V FG+Q+H H  K     +  V  SL+DMY K G
Sbjct: 396 CMLEKGLMPDSFSLASSISACAGASSVRFGQQIHGHVTKRGF-ADEFVQNSLMDMYSKCG 454

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            ++ A   FD +  K +  +  +I  ++Q G +  ALK F +M    +  NE T  S + 
Sbjct: 455 FVDLAYTIFDKIWEKSIVTWNCMICGFSQNGISVEALKLFDEMCFNCMDINEVTFLSAIQ 514

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            CS    L  G+ +H   V +G   D+++ TALV MYAKCG +  A+ VF     +   S
Sbjct: 515 ACSNSGYLLKGKWIHHKLVVSGVQKDLYIDTALVDMYAKCGDLKTAQGVFNSMPEKSVVS 574

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           W+ MI  Y  HG    A   F  M++    P+E+TF+ +LSAC H G +EEGK +F+S++
Sbjct: 575 WSAMIAAYGIHGQITAATTLFTKMVESHIKPNEVTFMNILSACRHAGSVEEGKFYFNSMR 634

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
             YGI P  +HFA ++D+L RAG        I  T    +A +W  LL  C  HG ++L 
Sbjct: 635 D-YGIVPNAEHFASIVDLLSRAGDIDGAYEIIKSTCQHIDASIWGALLNGCRIHGRMDLI 693

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
               ++L E+       Y   S+I A  G W +   VR+ +   G+KK P  S IE+D
Sbjct: 694 HNIHKELREIRTNDTGYYTLLSNIYAEGGNWYESRKVRSRMEGMGLKKVPGYSSIEID 751



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 136/574 (23%), Positives = 263/574 (45%), Gaps = 38/574 (6%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSK---FSLSTVLKG 60
           ++ VF++ P  +   +  L+  Y       +V+ L+        + ++   F   +V+K 
Sbjct: 52  SRLVFETHPSPDSFMFGVLIKCYLWHHLFDQVVSLYHHHIQKGSRLTQNCTFLYPSVIKA 111

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +  G +  G+ VH   ++ G   D  +  SL+ MY + G   +A KVF  I+  D+V+W
Sbjct: 112 ISVVGGLVVGRKVHGRIVKTGLGTDHVIGTSLLGMYGELGCLSDARKVFDEIRVRDLVSW 171

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +++ C  + G  +E  ++   M    V P+   + S+  A  + G  R  +S+H  + +
Sbjct: 172 SSVVACYVENGRPREGLEMLRWMVSEGVGPDSVTMLSVAEACGKVGCLRLAKSVHGYVIR 231

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
                D  + N+L+ MY +   +     +FE+++   +  W ++ S        ++ +  
Sbjct: 232 KEMAGDASLRNSLIVMYGQCSYLRGAKGMFESVSDPSTACWTSMISSCNQNGCFEEAIDA 291

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGTSLVDMYD 299
           F +M     + N  T I +L  C+ L  +  GK +H   ++  +DG  + +G +L+D Y 
Sbjct: 292 FKKMQESEVEVNAVTMISVLCCCARLGWLKEGKSVHCFILRREMDGADLDLGPALMDFYA 351

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
               +         + N  + ++  +I+ YA+ G  E A+  F  M  +G+  + F+LAS
Sbjct: 352 ACWKISSCEKLLCLIGNSSVVSWNTLISIYAREGLNEEAMVLFVCMLEKGLMPDSFSLAS 411

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            ++ C+  +++  G+ +H    K G   D FV  +L+ MY+KCG +D A  +F     + 
Sbjct: 412 SISACAGASSVRFGQQIHGHVTKRG-FADEFVQNSLMDMYSKCGFVDLAYTIFDKIWEKS 470

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK--KH 477
             +WN MI G+ ++G+  +AL+ F  M       +E+TF+  + ACS+ G + +GK   H
Sbjct: 471 IVTWNCMICGFSQNGISVEALKLFDEMCFNCMDINEVTFLSAIQACSNSGYLLKGKWIHH 530

Query: 478 ---FSSIKK-----------------------IYGITP--TIKHFACMIDILGRAGKFTE 509
               S ++K                       ++   P  ++  ++ MI   G  G+ T 
Sbjct: 531 KLVVSGVQKDLYIDTALVDMYAKCGDLKTAQGVFNSMPEKSVVSWSAMIAAYGIHGQITA 590

Query: 510 IENFIT---ETKLTPNALVWENLLGACSWHGNIE 540
                T   E+ + PN + + N+L AC   G++E
Sbjct: 591 ATTLFTKMVESHIKPNEVTFMNILSACRHAGSVE 624



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/429 (25%), Positives = 208/429 (48%), Gaps = 8/429 (1%)

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           F +   +++   +HA  +  G   D   S  L++ Y++ G   ++  VF     PD   +
Sbjct: 8   FRSCSTLRSLSQLHAHLVVTGLHSDPLASTKLLESYARMGSLHSSRLVFETHPSPDSFMF 67

Query: 121 GAIITCLDQQGCCQEAAKIFN--LMRESSVKPN-QFVLTSLVRATTETGDQRCGESIHAV 177
           G +I C        +   +++  + + S +  N  F+  S+++A +  G    G  +H  
Sbjct: 68  GVLIKCYLWHHLFDQVVSLYHHHIQKGSRLTQNCTFLYPSVIKAISVVGGLVVGRKVHGR 127

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
           I K G  +D ++G +L+ MY E G +S   +VF+ I  +D VSW+++ + + +   P +G
Sbjct: 128 IVKTGLGTDHVIGTSLLGMYGELGCLSDARKVFDEIRVRDLVSWSSVVACYVENGRPREG 187

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           L +   M+ +G  P+  T + + +AC  +  +   K +H + I+  + G+  +  SL+ M
Sbjct: 188 LEMLRWMVSEGVGPDSVTMLSVAEACGKVGCLRLAKSVHGYVIRKEMAGDASLRNSLIVM 247

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y +   L  A   F+S+++     +T++I+S  Q G  E A+  F+KM+   ++ N  T+
Sbjct: 248 YGQCSYLRGAKGMFESVSDPSTACWTSMISSCNQNGCFEEAIDAFKKMQESEVEVNAVTM 307

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKT---GHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            S L  C+ +  L  G+ +H   ++    G  LD+    AL+  YA C  I   E +   
Sbjct: 308 ISVLCCCARLGWLKEGKSVHCFILRREMDGADLDL--GPALMDFYAACWKISSCEKLLCL 365

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
                  SWN +I  Y + GL E+A+  F  ML++G +PD  +    +SAC+    +  G
Sbjct: 366 IGNSSVVSWNTLISIYAREGLNEEAMVLFVCMLEKGLMPDSFSLASSISACAGASSVRFG 425

Query: 475 KKHFSSIKK 483
           ++    + K
Sbjct: 426 QQIHGHVTK 434



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 109/227 (48%), Gaps = 1/227 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++LA  +F  + E ++V+WN ++ G++++G   + + LF  M       ++ +  + ++ 
Sbjct: 456 VDLAYTIFDKIWEKSIVTWNCMICGFSQNGISVEALKLFDEMCFNCMDINEVTFLSAIQA 515

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +NSGY+  G+ +H   +  G   D ++  +LVDMY+KCG    A  VF  + +  VV+W
Sbjct: 516 CSNSGYLLKGKWIHHKLVVSGVQKDLYIDTALVDMYAKCGDLKTAQGVFNSMPEKSVVSW 575

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I      G    A  +F  M ES +KPN+    +++ A    G    G+     +  
Sbjct: 576 SAMIAAYGIHGQITAATTLFTKMVESHIKPNEVTFMNILSACRHAGSVEEGKFYFNSMRD 635

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALFS 226
           YG   +     ++V +    G +     + ++   H D+  W AL +
Sbjct: 636 YGIVPNAEHFASIVDLLSRAGDIDGAYEIIKSTCQHIDASIWGALLN 682


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 171/529 (32%), Positives = 278/529 (52%), Gaps = 33/529 (6%)

Query: 105 ALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTE 164
           A  VF  I++P+ + W  +I           +  ++  M    + PN +    L+++  +
Sbjct: 17  ATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAK 76

Query: 165 TGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVS-------------------- 204
           +     G+ IH  + K GF+ D  V  +L+SMY++N R+                     
Sbjct: 77  SKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTAL 136

Query: 205 ---YGSR--------VFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
              Y SR        +F+ I  +D VSWNA+ S + +     + L +F +M+    +P+ 
Sbjct: 137 ITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDE 196

Query: 254 CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
            T++ +L AC+    +  G+Q+H+    H  D N  +  +L+D+Y K G +E A   F  
Sbjct: 197 STYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQG 256

Query: 314 LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG 373
           L+ KD+ ++  +I  Y      + AL  F++M   G   N+ T+ S L  C+ +  +  G
Sbjct: 257 LSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIG 316

Query: 374 RLLHSIAVK--TGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV 431
           R +H    K   G      + T+L+ MYAKCG I+ A  VF     +  +SWN MI G+ 
Sbjct: 317 RWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFA 376

Query: 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI 491
            HG  + + + F  M   G  PD+ITFV +LSACSH G+++ G+  F S+ + Y +TP +
Sbjct: 377 MHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKL 436

Query: 492 KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551
           +H+ CMID+LG +G F E E  I   ++ P+ ++W +LL AC  HGN+EL E  A+ L++
Sbjct: 437 EHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQNLIK 496

Query: 552 LEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           +EP+  S+Y+  S+I A+ GRW D + +RALL+ + +KK P CS IEVD
Sbjct: 497 IEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVD 545



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 113/407 (27%), Positives = 199/407 (48%), Gaps = 33/407 (8%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A  VF+++ E N + WN ++ G+A S D    + L+  M  +    + ++   +LK 
Sbjct: 14  LPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKS 73

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYR--------- 111
            A S     GQ +H   ++LG  LD ++  SL+ MY +    ++A KVF R         
Sbjct: 74  CAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSY 133

Query: 112 ----------------------IKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK 149
                                 I   DVV+W A+I+   + GC +EA ++F  M + +V+
Sbjct: 134 TALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVR 193

Query: 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRV 209
           P++    +++ A   +G    G  +H+ +  +GF+S+  + NAL+ +Y + G V     +
Sbjct: 194 PDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGL 253

Query: 210 FEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDV 269
           F+ ++++D +SWN L   +       + L +F +ML  G  PN  T + +L AC+ L  +
Sbjct: 254 FQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAI 313

Query: 270 GFGKQLHAHTIKH--SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIIT 327
             G+ +H +  K    +     + TSL+DMY K G +E A   F+S+ +K L ++ A+I 
Sbjct: 314 DIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIF 373

Query: 328 SYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
            +A  G A+ +   F +MR  GI+ ++ T    L+ CS    L  GR
Sbjct: 374 GFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGR 420



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 151/319 (47%), Gaps = 17/319 (5%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F  +P  +VVSWNA+++GYAE+G  ++ + LF  M  M  +  + +  TVL   A+
Sbjct: 149 AQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAH 208

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           SG I+ G+ VH+     G   +  +  +L+D+YSKCG  + A  +F  +   DV++W  +
Sbjct: 209 SGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTL 268

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY-- 181
           I         +EA  +F  M  S   PN   + S++ A    G    G  IH  I K   
Sbjct: 269 IGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLK 328

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G  + + +  +L+ MY + G +    +VF ++ H+   SWNA+   F  +   D    +F
Sbjct: 329 GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLF 388

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M   G +P+  TF+ +L ACS    +  G+ +                 S+   Y  +
Sbjct: 389 SRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIF---------------RSMTQDYKMT 433

Query: 302 GCLEDAGVAFDSLANKDLF 320
             LE  G   D L +  LF
Sbjct: 434 PKLEHYGCMIDLLGHSGLF 452



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 2/176 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  +F+ +   +V+SWN L+ GY      ++ + LF  M    +  +  ++ +VL  
Sbjct: 247 VETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPA 306

Query: 61  FANSGYIKAGQVVHA-MAIRL-GCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
            A+ G I  G+ +H  +  RL G      L  SL+DMY+KCG  + A +VF  +    + 
Sbjct: 307 CAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLS 366

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
           +W A+I      G    +  +F+ MR+  ++P+      L+ A + +G    G  I
Sbjct: 367 SWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHI 422



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 82/168 (48%), Gaps = 9/168 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A +VF SM   ++ SWNA++ G+A  G       LF  M+ +  +    +   +L  
Sbjct: 350 IEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSA 409

Query: 61  FANSGYIKAGQ-VVHAMA--IRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPD 116
            ++SG +  G+ +  +M    ++   L+ +  C ++D+    GL   A ++   ++ +PD
Sbjct: 410 CSHSGMLDLGRHIFRSMTQDYKMTPKLEHY-GC-MIDLLGHSGLFKEAEEMINTMEMEPD 467

Query: 117 VVAWGAIITCLDQQGCCQEAAKIF--NLMRESSVKPNQFVLTSLVRAT 162
            V W +++      G   E A+ F  NL++     P+ ++L S + A+
Sbjct: 468 GVIWCSLLKACKMHGNV-ELAESFAQNLIKIEPENPSSYILLSNIYAS 514


>gi|224096616|ref|XP_002310672.1| predicted protein [Populus trichocarpa]
 gi|222853575|gb|EEE91122.1| predicted protein [Populus trichocarpa]
          Length = 551

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 180/531 (33%), Positives = 288/531 (54%), Gaps = 1/531 (0%)

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127
           K G ++H   +  G A +  LS  L+  YSK G   +A KVF R+ +  VV+W A I+  
Sbjct: 14  KPGHLIHNQILTNGFASNIHLSTKLIIFYSKLGDTVSARKVFDRMPERTVVSWSAQISGY 73

Query: 128 DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDT 187
            Q GC Q+A  +F  M  +  K NQF   S++RA T     + G  I   + K  F S+ 
Sbjct: 74  SQNGCYQDALLVFLDMLRAGFKANQFTYGSVLRACTGLRCLQRGMQIQGCLEKSRFASNL 133

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK 247
           +V +AL+ ++ + G++   S +F  +  +D VSWNA+   +          R+F  M+ +
Sbjct: 134 IVQSALLDLHSKCGKMEDASYLFGMMEERDVVSWNAIIGAYAVQGFSGDSFRMFRSMMQE 193

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           G  P++ TF  +LKA    SDV    Q+H   I+     +  +  SL+D Y K   L  A
Sbjct: 194 GMSPDLFTFGSVLKASGMASDVIRVCQIHQLIIQLGYGSHISLSGSLIDAYAKCESLASA 253

Query: 308 GVAFDSLANKDLFAYTAIITSYAQ-AGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
              + S+  KD+ + TA++T YA+ +  +  AL  F++++   +K ++  L S  N C+ 
Sbjct: 254 HCLYKSMPMKDMISCTALMTGYARDSNYSSKALDLFKEIQQMHMKIDDVILCSMFNICAN 313

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           +++L+ GR +H++A+K     D+ +  AL+ MYAK G I DA   F     ++  SW  +
Sbjct: 314 ISSLSVGRQIHALALKCKPTYDVAMGNALIDMYAKSGEIKDANRAFNEMEEKNVISWTSL 373

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           I GY  HG G +A+  F+ M  EG  P++ITF+ +L AC+H GL  EG + F+++   Y 
Sbjct: 374 ITGYGSHGHGHEAIALFKKMEYEGLKPNDITFLSLLFACNHCGLTGEGWECFNNMISKYN 433

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDA 546
           I P  +HF+CM+D+  R G   E  N I +  + PNA +W  +LGAC  +GN+ L E+ A
Sbjct: 434 ILPRAEHFSCMVDLFARGGLLEEAYNLINKMNIKPNASLWGAILGACYIYGNMPLAEEAA 493

Query: 547 EKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
             L +++P+   NYV  +DI A  G W++   +R L+  + +KK P  S+I
Sbjct: 494 IHLFKMDPENSVNYVVLADIYAAAGSWDNAWKMRKLMEERNLKKAPGYSFI 544



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/449 (25%), Positives = 228/449 (50%), Gaps = 7/449 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF  MPE  VVSW+A ++GY+++G  Q  + +F  M     K ++F+  +VL+    
Sbjct: 51  ARKVFDRMPERTVVSWSAQISGYSQNGCYQDALLVFLDMLRAGFKANQFTYGSVLRACTG 110

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ G  +     +   A +  +  +L+D++SKCG  ++A  +F  +++ DVV+W AI
Sbjct: 111 LRCLQRGMQIQGCLEKSRFASNLIVQSALLDLHSKCGKMEDASYLFGMMEERDVVSWNAI 170

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I     QG   ++ ++F  M +  + P+ F   S+++A+    D      IH +I + G+
Sbjct: 171 IGAYAVQGFSGDSFRMFRSMMQEGMSPDLFTFGSVLKASGMASDVIRVCQIHQLIIQLGY 230

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF-QDYESPDQGLRIFY 242
            S   +  +L+  Y +   ++    +++++  +D +S  AL + + +D     + L +F 
Sbjct: 231 GSHISLSGSLIDAYAKCESLASAHCLYKSMPMKDMISCTALMTGYARDSNYSSKALDLFK 290

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           ++     K +      +   C+++S +  G+Q+HA  +K     +  +G +L+DMY KSG
Sbjct: 291 EIQQMHMKIDDVILCSMFNICANISSLSVGRQIHALALKCKPTYDVAMGNALIDMYAKSG 350

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            ++DA  AF+ +  K++ ++T++IT Y   G    A+  F+KM  EG+K N+ T  S L 
Sbjct: 351 EIKDANRAFNEMEEKNVISWTSLITGYGSHGHGHEAIALFKKMEYEGLKPNDITFLSLLF 410

Query: 363 GCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
            C+       G    +++  K   L      + +V ++A+ G +++A  +     ++  A
Sbjct: 411 ACNHCGLTGEGWECFNNMISKYNILPRAEHFSCMVDLFARGGLLEEAYNLINKMNIKPNA 470

Query: 422 S-WNMMIGGYVKHG----LGEKALEAFRM 445
           S W  ++G    +G      E A+  F+M
Sbjct: 471 SLWGAILGACYIYGNMPLAEEAAIHLFKM 499



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 191/408 (46%), Gaps = 16/408 (3%)

Query: 164 ETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNA 223
           ET  ++ G  IH  I   GF S+  +   L+  Y + G      +VF+ +  +  VSW+A
Sbjct: 9   ETKAKKPGHLIHNQILTNGFASNIHLSTKLIIFYSKLGDTVSARKVFDRMPERTVVSWSA 68

Query: 224 LFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS 283
             S +         L +F  ML  GFK N  T+  +L+AC+ L  +  G Q+     K  
Sbjct: 69  QISGYSQNGCYQDALLVFLDMLRAGFKANQFTYGSVLRACTGLRCLQRGMQIQGCLEKSR 128

Query: 284 LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFR 343
              N +V ++L+D++ K G +EDA   F  +  +D+ ++ AII +YA  G +  + + FR
Sbjct: 129 FASNLIVQSALLDLHSKCGKMEDASYLFGMMEERDVVSWNAIIGAYAVQGFSGDSFRMFR 188

Query: 344 KMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403
            M  EG+  + FT  S L      + +     +H + ++ G+   + +S +L+  YAKC 
Sbjct: 189 SMMQEGMSPDLFTFGSVLKASGMASDVIRVCQIHQLIIQLGYGSHISLSGSLIDAYAKCE 248

Query: 404 SIDDAEAVFKGSALRDTASWNMMIGGYVK-HGLGEKALEAFRMMLDEGYVPDEITFVVVL 462
           S+  A  ++K   ++D  S   ++ GY +      KAL+ F+ +       D++    + 
Sbjct: 249 SLASAHCLYKSMPMKDMISCTALMTGYARDSNYSSKALDLFKEIQQMHMKIDDVILCSMF 308

Query: 463 SACSHMGLIEEGKK-HFSSIKKIYGITPT--IKHFACMIDILGRAGKFTEIENFITETKL 519
           + C+++  +  G++ H  ++K      PT  +     +ID+  ++G+  +      E + 
Sbjct: 309 NICANISSLSVGRQIHALALK----CKPTYDVAMGNALIDMYAKSGEIKDANRAFNEME- 363

Query: 520 TPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
             N + W +L+     HG+         + + L  KME   + P+DI+
Sbjct: 364 EKNVISWTSLITGYGSHGH-------GHEAIALFKKMEYEGLKPNDIT 404



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 153/311 (49%), Gaps = 6/311 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK- 59
           ME A  +F  M E +VVSWNA++  YA  G       +F SM         F+  +VLK 
Sbjct: 149 MEDASYLFGMMEERDVVSWNAIIGAYAVQGFSGDSFRMFRSMMQEGMSPDLFTFGSVLKA 208

Query: 60  -GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
            G A S  I+  Q +H + I+LG      LS SL+D Y+KC    +A  ++  +   D++
Sbjct: 209 SGMA-SDVIRVCQ-IHQLIIQLGYGSHISLSGSLIDAYAKCESLASAHCLYKSMPMKDMI 266

Query: 119 AWGAIITCLDQ-QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           +  A++T   +      +A  +F  +++  +K +  +L S+            G  IHA+
Sbjct: 267 SCTALMTGYARDSNYSSKALDLFKEIQQMHMKIDDVILCSMFNICANISSLSVGRQIHAL 326

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
             K     D  +GNAL+ MY ++G +   +R F  +  ++ +SW +L + +  +    + 
Sbjct: 327 ALKCKPTYDVAMGNALIDMYAKSGEIKDANRAFNEMEEKNVISWTSLITGYGSHGHGHEA 386

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTI-KHSLDGNHVVGTSLVD 296
           + +F +M  +G KPN  TF+ +L AC+     G G +   + I K+++       + +VD
Sbjct: 387 IALFKKMEYEGLKPNDITFLSLLFACNHCGLTGEGWECFNNMISKYNILPRAEHFSCMVD 446

Query: 297 MYDKSGCLEDA 307
           ++ + G LE+A
Sbjct: 447 LFARGGLLEEA 457


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 180/577 (31%), Positives = 287/577 (49%), Gaps = 45/577 (7%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADN-----ALKVFYRI--KDPDVVA 119
           I + + +H++ I+ G     F    L++    C L+ +     AL +F+ I  + P++  
Sbjct: 38  IPSLKQIHSLIIKSGLHNTLFAQSKLIEF---CALSPSRDLSYALSLFHSIHHQPPNIFI 94

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  +I           +  +F+ M  S + PN     SL ++  ++      + +HA   
Sbjct: 95  WNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHAL 154

Query: 180 KYGFE-------------------------------SDTLVGNALVSMYMENGRVSYGSR 208
           K                                    D +   AL++ Y+  G V    R
Sbjct: 155 KLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARR 214

Query: 209 VFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSD 268
           +F+ I  +D VSWNA+ + +      ++ L  F +M      PN  T + +L AC  L  
Sbjct: 215 LFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRS 274

Query: 269 VGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITS 328
           +  GK + +         N  +  +LVDMY K G +  A   FD + +KD+  +  +I  
Sbjct: 275 LELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGG 334

Query: 329 YAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVK----TG 384
           Y      E AL  F  M  E +  N+ T  + L  C+ +  L  G+ +H+   K    TG
Sbjct: 335 YCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTG 394

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
           ++ ++ + T+++ MYAKCG ++ AE VF+    R  ASWN MI G   +G  E+AL  F 
Sbjct: 395 NVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFE 454

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA 504
            M++EG+ PD+ITFV VLSAC+  G +E G ++FSS+ K YGI+P ++H+ CMID+L R+
Sbjct: 455 EMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARS 514

Query: 505 GKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564
           GKF E +  +   ++ P+  +W +LL AC  HG +E  E  AE+L ELEP+    YV  S
Sbjct: 515 GKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLLS 574

Query: 565 DISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           +I A  GRW+D + +R  L+ +G+KK P C+ IE+DG
Sbjct: 575 NIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSIEIDG 611



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 121/458 (26%), Positives = 205/458 (44%), Gaps = 39/458 (8%)

Query: 15  NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVH 74
           N+  WN L+  ++ +      +HLF  M       +  +  ++ K  A S      + +H
Sbjct: 91  NIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLH 150

Query: 75  AMAIRLGCALDKFLSCSLVDMYSKCG-------------------------------LAD 103
           A A++L   L   +  SL+ MYS+ G                                 D
Sbjct: 151 AHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVD 210

Query: 104 NALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATT 163
           +A ++F  I   DVV+W A+I    Q G  +EA   F  M+E+ V PNQ  + S++ A  
Sbjct: 211 DARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACG 270

Query: 164 ETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNA 223
                  G+ I + +   GF  +  + NALV MY + G +    ++F+ +  +D + WN 
Sbjct: 271 HLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNT 330

Query: 224 LFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS 283
           +   +      ++ L +F  ML +   PN  TF+ +L AC+SL  +  GK +HA+ I  +
Sbjct: 331 MIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAY-IDKN 389

Query: 284 LDG-----NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMA 338
           L G     N  + TS++ MY K GC+E A   F S+ ++ L ++ A+I+  A  G AE A
Sbjct: 390 LKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERA 449

Query: 339 LKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVA 397
           L  F +M  EG + ++ T    L+ C+    +  G R   S+    G    +     ++ 
Sbjct: 450 LGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMID 509

Query: 398 MYAKCGSIDDAEAVFKGSALR-DTASWNMMIGGYVKHG 434
           + A+ G  D+A+ +     +  D A W  ++     HG
Sbjct: 510 LLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHG 547



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 158/316 (50%), Gaps = 15/316 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+R+F  +P  +VVSWNA++ GY +SG  ++ +  F  M++ +   ++ ++ +VL    +
Sbjct: 212 ARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGH 271

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ G+ + +     G   +  L  +LVDMYSKCG    A K+F  ++D DV+ W  +
Sbjct: 272 LRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTM 331

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK--- 180
           I         +EA  +F +M   +V PN     +++ A    G    G+ +HA I K   
Sbjct: 332 IGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLK 391

Query: 181 -YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
             G  ++  +  +++ MY + G V    +VF ++  +   SWNA+ S        ++ L 
Sbjct: 392 GTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALG 451

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL----- 294
           +F +M+ +GF+P+  TF+ +L AC+    V  G     H    S++ ++ +   L     
Sbjct: 452 LFEEMINEGFQPDDITFVGVLSACTQAGFVELG-----HRYFSSMNKDYGISPKLQHYGC 506

Query: 295 -VDMYDKSGCLEDAGV 309
            +D+  +SG  ++A V
Sbjct: 507 MIDLLARSGKFDEAKV 522



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 82/167 (49%), Gaps = 9/167 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E+A++VF+SM   ++ SWNA+++G A +G  ++ + LF  M +   +    +   VL  
Sbjct: 415 VEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSA 474

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
              +G+++ G +   +M    G +        ++D+ ++ G  D A  +   ++ +PD  
Sbjct: 475 CTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGA 534

Query: 119 AWGAIITCLDQQGCCQ----EAAKIFNLMRESSVKPNQFVLTSLVRA 161
            WG+++      G  +     A ++F L  E+S     +VL S + A
Sbjct: 535 IWGSLLNACRIHGQVEFGEYVAERLFELEPENS---GAYVLLSNIYA 578


>gi|297742233|emb|CBI34382.3| unnamed protein product [Vitis vinifera]
          Length = 705

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 189/607 (31%), Positives = 318/607 (52%), Gaps = 36/607 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A ++F  MP+  VVSW ++++G+ + G   +V+ +F  M +  +  ++++L+ +L+ 
Sbjct: 93  IEDAAKLFDHMPDKTVVSWTSMMSGHCQRGAFDEVISIFWRMLETLQP-NEYTLAVILQA 151

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    +K  Q++H   I+ G  +D FL  SL+D Y+K G    A K+  R+   DVV+W
Sbjct: 152 CAQKRDLKLVQLIHCHIIKTGFVMDAFLQNSLIDGYTKSGTLVAAEKLMKRLICRDVVSW 211

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I+     G  ++A   F  M+E  V PN   + S+++A +   + +  + +H ++ K
Sbjct: 212 TSVISGCVLNGMVEKALLFFFEMQEDGVSPNTVTILSILQACSLINEWQVFQWVHGLVMK 271

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
             +  +  V N+LV MY  NG    G ++F           N  F     Y S +     
Sbjct: 272 AEWRENVFVMNSLVEMYSINGYFKEGFQIF----------CNFCFEGDGQYLSTE----- 316

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
                         T   +L+ CS    +  G+Q+H + IKH      +V  SL+ MY +
Sbjct: 317 --------------TIATLLQGCSHSKCLKLGEQIHGYQIKHGFFPCTIVENSLIYMYAE 362

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG----IKSNEFT 356
           +   + A   F  ++ +D+ ++  +I+S  +   +  AL    ++   G    I  +  T
Sbjct: 363 NERDDAAFQLFRKMSCRDIVSWNTMISSLVKGSSSYQALMLLSEVHSNGGSDMIYPDFVT 422

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
           + + +  CS +A+L  G+++H    + G + D+FV  +LV MY KCG +  AE V +   
Sbjct: 423 ILASIQACSSLASLQLGQVIHGYITRAGLICDIFVQNSLVDMYGKCGRLHLAEKVSEEMP 482

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG-YVPDEITFVVVLSACSHMGLIEEGK 475
           +RD  SWN +I  Y  +G G  AL  F+ + + G + P+ ITF  +LSAC+H GL+ EG 
Sbjct: 483 VRDLGSWNSLIAAYGINGNGISALNVFKQLKNTGAHRPNAITFTNILSACAHAGLVAEGF 542

Query: 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
           + F S+K+ Y + P I+HFACM+D+LGRAG+  E E FI +    P   VW  LLG C  
Sbjct: 543 EIFKSMKREYSLEPRIEHFACMVDLLGRAGRLEEAEAFIQKMPFEPGPEVWGALLGGCGL 602

Query: 536 HGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRA-LLSSQGIKKEPSC 594
            GN+++ E+ A+KL  LEPK  +  V  S++ A+  +W D + VRA +  S+ ++KE   
Sbjct: 603 FGNLDIAERVAKKLYILEPKSRAWRVALSNVYASVNKWEDAAKVRAEMRRSEELQKEGGW 662

Query: 595 SWIEVDG 601
           S +EV G
Sbjct: 663 SSVEVRG 669



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 73/212 (34%), Positives = 121/212 (57%), Gaps = 1/212 (0%)

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
           T + +L +C++  D+  G  +H + +K  L  N  V  SL+DMY K G +EDA   FD +
Sbjct: 44  TAVRVLSSCAANRDLRLGSCIHTNILKSGLHTNVFVANSLMDMYAKCGRIEDAAKLFDHM 103

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
            +K + ++T++++ + Q G  +  +  F +M LE ++ NE+TLA  L  C+    L   +
Sbjct: 104 PDKTVVSWTSMMSGHCQRGAFDEVISIFWRM-LETLQPNEYTLAVILQACAQKRDLKLVQ 162

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
           L+H   +KTG ++D F+  +L+  Y K G++  AE + K    RD  SW  +I G V +G
Sbjct: 163 LIHCHIIKTGFVMDAFLQNSLIDGYTKSGTLVAAEKLMKRLICRDVVSWTSVISGCVLNG 222

Query: 435 LGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
           + EKAL  F  M ++G  P+ +T + +L ACS
Sbjct: 223 MVEKALLFFFEMQEDGVSPNTVTILSILQACS 254



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 94/192 (48%), Gaps = 9/192 (4%)

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
           S+  T    L+ C+    L  G  +H+  +K+G   ++FV+ +L+ MYAKCG I+DA  +
Sbjct: 40  SDSLTAVRVLSSCAANRDLRLGSCIHTNILKSGLHTNVFVANSLMDMYAKCGRIEDAAKL 99

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH---M 468
           F     +   SW  M+ G+ + G  ++ +  F  ML E   P+E T  V+L AC+    +
Sbjct: 100 FDHMPDKTVVSWTSMMSGHCQRGAFDEVISIFWRML-ETLQPNEYTLAVILQACAQKRDL 158

Query: 469 GLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWEN 528
            L++    H   IK  + +   +++   +ID   ++G     E  +    +  + + W +
Sbjct: 159 KLVQLIHCHI--IKTGFVMDAFLQN--SLIDGYTKSGTLVAAEKLMKRL-ICRDVVSWTS 213

Query: 529 LLGACSWHGNIE 540
           ++  C  +G +E
Sbjct: 214 VISGCVLNGMVE 225


>gi|224106429|ref|XP_002314162.1| predicted protein [Populus trichocarpa]
 gi|222850570|gb|EEE88117.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  311 bits (796), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 165/549 (30%), Positives = 296/549 (53%), Gaps = 2/549 (0%)

Query: 50  SKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF 109
           + + L+ ++   A SG    G   H+  ++LG   + ++  ++VDMY+KCG   +A  +F
Sbjct: 68  NPYFLNKIVSFCAKSGSFHLGIQAHSTILKLGFISNVYICSAVVDMYAKCGEISSARVLF 127

Query: 110 YRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
            ++    VV W ++I       C + A ++F  M ++++  + F ++S +   ++   + 
Sbjct: 128 DQMPQRTVVTWNSLIYGYLAVNCPKIAIELFIKMLKAAINVSAFSVSSCLAGCSQLEARE 187

Query: 170 CGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
            G  +H +I K G   + +VG +LV MY + G V     VF+ + +++ ++W ++ + + 
Sbjct: 188 VGTQVHGLILKTGLGYNVVVGTSLVDMYSKCGDVDDSRLVFDHMVNRNVITWTSMVTGYS 247

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
             E PD+ + +  +M+L+  +PN  T+  +L + S    + +  Q+H   I+  L+ N  
Sbjct: 248 QIEKPDEAMALVKEMVLQDLRPNCVTYNSLLSSFSGPDCLSYCLQVHCCIIQLGLESNVY 307

Query: 290 VGTSLVDMYDK-SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
           +  +LV +Y K S  LED       +   D  A+ A+I  Y++ G  E AL+CF +M+  
Sbjct: 308 IAATLVTVYSKCSSSLEDFKKVCSVVMTCDNIAWNAVIAGYSKLGRHEEALRCFHEMKQA 367

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
           GI  + +TL S +      + L  G+ +H++  +TG++  + V   LV+MYA+CG+I D+
Sbjct: 368 GIDIDSYTLTSVVGAIGNSSFLEEGKAMHALIHRTGYISHLNVQNGLVSMYARCGAIGDS 427

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
           + VF      D  SWN ++  +  HG G +A+E F  M      P+  TF+ VL ACSH+
Sbjct: 428 KRVFWFMEEHDVISWNALLTAFAHHGYGREAVELFEQMRKTEIKPNSSTFLAVLCACSHV 487

Query: 469 GLIEEGKKHFSSIKKIYGITP-TIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWE 527
           G +++G ++F ++K    + P  ++H+A ++D  GRAG   E E FI    + P   V++
Sbjct: 488 GFVDKGIEYFDTMKSDILLEPLKVEHYASLVDTFGRAGYLNEAEAFINSMPIVPAPSVYK 547

Query: 528 NLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQG 587
            LL A   HGN E+  + A+KLLEL P   + YV  S +    G W+D + +R L+  +G
Sbjct: 548 ALLSASLVHGNREIAARSAKKLLELWPNDPATYVLLSSVLTVDGNWDDAADLRKLMCDRG 607

Query: 588 IKKEPSCSW 596
           ++K+P  SW
Sbjct: 608 LRKKPGYSW 616



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 119/465 (25%), Positives = 219/465 (47%), Gaps = 7/465 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F  MP+  VV+WN+L+ GY      +  + LF  M       S FS+S+ L G + 
Sbjct: 123 ARVLFDQMPQRTVVTWNSLIYGYLAVNCPKIAIELFIKMLKAAINVSAFSVSSCLAGCSQ 182

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
               + G  VH + ++ G   +  +  SLVDMYSKCG  D++  VF  + + +V+ W ++
Sbjct: 183 LEAREVGTQVHGLILKTGLGYNVVVGTSLVDMYSKCGDVDDSRLVFDHMVNRNVITWTSM 242

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +T   Q     EA  +   M    ++PN     SL+ + +          +H  I + G 
Sbjct: 243 VTGYSQIEKPDEAMALVKEMVLQDLRPNCVTYNSLLSSFSGPDCLSYCLQVHCCIIQLGL 302

Query: 184 ESDTLVGNALVSMYME-NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           ES+  +   LV++Y + +  +    +V   +   D+++WNA+ + +      ++ LR F+
Sbjct: 303 ESNVYIAATLVTVYSKCSSSLEDFKKVCSVVMTCDNIAWNAVIAGYSKLGRHEEALRCFH 362

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M   G   +  T   ++ A  + S +  GK +HA   +     +  V   LV MY + G
Sbjct: 363 EMKQAGIDIDSYTLTSVVGAIGNSSFLEEGKAMHALIHRTGYISHLNVQNGLVSMYARCG 422

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            + D+   F  +   D+ ++ A++T++A  G    A++ F +MR   IK N  T  + L 
Sbjct: 423 AIGDSKRVFWFMEEHDVISWNALLTAFAHHGYGREAVELFEQMRKTEIKPNSSTFLAVLC 482

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVS---TALVAMYAKCGSIDDAEAVFKGSALRD 419
            CS V  +  G + +   +K+  LL+        +LV  + + G +++AEA      +  
Sbjct: 483 ACSHVGFVDKG-IEYFDTMKSDILLEPLKVEHYASLVDTFGRAGYLNEAEAFINSMPIVP 541

Query: 420 TAS-WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
             S +  ++   + HG  E A  + + +L E +  D  T+V++ S
Sbjct: 542 APSVYKALLSASLVHGNREIAARSAKKLL-ELWPNDPATYVLLSS 585



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 93/166 (56%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E  K+V   +   + ++WNA++ GY++ G  ++ +  F  MK        ++L++V+  
Sbjct: 323 LEDFKKVCSVVMTCDNIAWNAVIAGYSKLGRHEEALRCFHEMKQAGIDIDSYTLTSVVGA 382

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             NS +++ G+ +HA+  R G      +   LV MY++CG   ++ +VF+ +++ DV++W
Sbjct: 383 IGNSSFLEEGKAMHALIHRTGYISHLNVQNGLVSMYARCGAIGDSKRVFWFMEEHDVISW 442

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
            A++T     G  +EA ++F  MR++ +KPN     +++ A +  G
Sbjct: 443 NALLTAFAHHGYGREAVELFEQMRKTEIKPNSSTFLAVLCACSHVG 488



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 81/183 (44%), Gaps = 2/183 (1%)

Query: 348 EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
            G  SN + L   ++ C+   +   G   HS  +K G + ++++ +A+V MYAKCG I  
Sbjct: 63  HGSLSNPYFLNKIVSFCAKSGSFHLGIQAHSTILKLGFISNVYICSAVVDMYAKCGEISS 122

Query: 408 AEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
           A  +F     R   +WN +I GY+     + A+E F  ML         +    L+ CS 
Sbjct: 123 ARVLFDQMPQRTVVTWNSLIYGYLAVNCPKIAIELFIKMLKAAINVSAFSVSSCLAGCSQ 182

Query: 468 MGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWE 527
           +   E G +    I K  G+   +     ++D+  + G   +    + +  +  N + W 
Sbjct: 183 LEAREVGTQVHGLILKT-GLGYNVVVGTSLVDMYSKCGDVDD-SRLVFDHMVNRNVITWT 240

Query: 528 NLL 530
           +++
Sbjct: 241 SMV 243


>gi|115473581|ref|NP_001060389.1| Os07g0635800 [Oryza sativa Japonica Group]
 gi|22293699|dbj|BAC10044.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113611925|dbj|BAF22303.1| Os07g0635800 [Oryza sativa Japonica Group]
 gi|125601219|gb|EAZ40795.1| hypothetical protein OsJ_25273 [Oryza sativa Japonica Group]
          Length = 705

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 183/593 (30%), Positives = 302/593 (50%), Gaps = 5/593 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLKGFA 62
           A RVF  MP  N  +WNA++ G  ++G   + + +F  M  D       F+   V+K  A
Sbjct: 107 ALRVFDGMPRRNSFAWNAVIKGLVDAGRFSEALEMFWGMVNDGSVAVDGFTYPPVIKACA 166

Query: 63  NSGYIKAGQVVHAMA---IRLGCAL-DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
             G +  G+ V  M    I  G A  + F+ C+LVDM++KCG  D A  VF  ++  D+ 
Sbjct: 167 ALGAVAQGRKVWEMVETDIASGNARPNVFVQCALVDMFAKCGCLDEARNVFESMQVRDLA 226

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           AW A+I      G   E   +FN MR      +  +  +++ A    G+ + G ++H   
Sbjct: 227 AWTAMIGGTVHSGNWLEVVDLFNHMRSEGFGVDSLIAATVISACGRAGELQVGTALHGCA 286

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K G   D  V NALV MY + G V     +F +   +D VSW++L   +      +  +
Sbjct: 287 VKSGASGDIYVSNALVDMYCKCGCVEMADCLFWSTNSKDVVSWSSLIVGYSQNGMHNVSV 346

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            +F +M+  G  PN  T   IL   S L  +  GK++H  +I+H L+ +  V ++L+D+Y
Sbjct: 347 SLFCEMISLGINPNSSTLASILPCLSVLKLIRSGKEIHCFSIRHGLERSEFVVSALIDLY 406

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G +  A   F    +KDL  + +++  YA  G ++ A    R ++  G+K +  T+ 
Sbjct: 407 SKQGLIRVAETIFWLTLDKDLAIWNSMVAGYAVNGYSDSAFCALRLLQKVGLKPDHVTVV 466

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L  C+    L  G+ LH+  +K        V+ AL+ MY KCG ++ A+ VF+    R
Sbjct: 467 SVLPLCNQHHMLIQGKELHAYVIKYCINSVCSVNNALLDMYCKCGFLEVAKEVFQLMTER 526

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           +T ++N++I  + KH   ++AL  F +M  +G  PD++TFV +LS CSH GLI++G   +
Sbjct: 527 NTVTYNILISSFGKHNHEDQALSFFDLMKRDGIAPDKVTFVALLSCCSHAGLIDKGLHLY 586

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            S+   Y I+P  +H++C++D+  R GK  E   F++     P   V   LL AC  H  
Sbjct: 587 HSMLHDYNISPEKEHYSCIVDLYSRCGKLDEAWCFMSNMAEEPEIDVLGGLLAACRVHNR 646

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
           +++ E   +++ E  P     ++  S+I A  G W+D + +R ++  + +KKE
Sbjct: 647 MDIAELVGKRIFEQNPNDPGYHILLSNIYADAGMWSDVTRIRTMIQERNLKKE 699



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 112/415 (26%), Positives = 200/415 (48%), Gaps = 13/415 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+ VF+SM   ++ +W A++ G   SG+  +V+ LF  M+           +TV+  
Sbjct: 210 LDEARNVFESMQVRDLAAWTAMIGGTVHSGNWLEVVDLFNHMRSEGFGVDSLIAATVISA 269

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              +G ++ G  +H  A++ G + D ++S +LVDMY KCG  + A  +F+     DVV+W
Sbjct: 270 CGRAGELQVGTALHGCAVKSGASGDIYVSNALVDMYCKCGCVEMADCLFWSTNSKDVVSW 329

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I    Q G    +  +F  M    + PN   L S++   +     R G+ IH    +
Sbjct: 330 SSLIVGYSQNGMHNVSVSLFCEMISLGINPNSSTLASILPCLSVLKLIRSGKEIHCFSIR 389

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +G E    V +AL+ +Y + G +     +F     +D   WN++ + +      D     
Sbjct: 390 HGLERSEFVVSALIDLYSKQGLIRVAETIFWLTLDKDLAIWNSMVAGYAVNGYSDSAFCA 449

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
              +   G KP+  T + +L  C+    +  GK+LHA+ IK+ ++    V  +L+DMY K
Sbjct: 450 LRLLQKVGLKPDHVTVVSVLPLCNQHHMLIQGKELHAYVIKYCINSVCSVNNALLDMYCK 509

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G LE A   F  +  ++   Y  +I+S+ +    + AL  F  M+ +GI  ++ T  + 
Sbjct: 510 CGFLEVAKEVFQLMTERNTVTYNILISSFGKHNHEDQALSFFDLMKRDGIAPDKVTFVAL 569

Query: 361 LNGCSPVATLANG-RLLHSIAVKTGHLLDMFVS------TALVAMYAKCGSIDDA 408
           L+ CS    +  G  L HS+      L D  +S      + +V +Y++CG +D+A
Sbjct: 570 LSCCSHAGLIDKGLHLYHSM------LHDYNISPEKEHYSCIVDLYSRCGKLDEA 618



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 127/471 (26%), Positives = 222/471 (47%), Gaps = 7/471 (1%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           +HA  +  G      L   LV  Y+K G   +AL+VF  +   +  AW A+I  L   G 
Sbjct: 75  LHAAVLVGGHGHGTVLVAQLVRAYAKLGDVAHALRVFDGMPRRNSFAWNAVIKGLVDAGR 134

Query: 133 CQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETG----DQRCGESIHAVICKYGFESDT 187
             EA ++F  ++ + SV  + F    +++A    G     ++  E +   I       + 
Sbjct: 135 FSEALEMFWGMVNDGSVAVDGFTYPPVIKACAALGAVAQGRKVWEMVETDIASGNARPNV 194

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK 247
            V  ALV M+ + G +     VFE++  +D  +W A+        +  + + +F  M  +
Sbjct: 195 FVQCALVDMFAKCGCLDEARNVFESMQVRDLAAWTAMIGGTVHSGNWLEVVDLFNHMRSE 254

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           GF  +      ++ AC    ++  G  LH   +K    G+  V  +LVDMY K GC+E A
Sbjct: 255 GFGVDSLIAATVISACGRAGELQVGTALHGCAVKSGASGDIYVSNALVDMYCKCGCVEMA 314

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367
              F S  +KD+ +++++I  Y+Q G   +++  F +M   GI  N  TLAS L   S +
Sbjct: 315 DCLFWSTNSKDVVSWSSLIVGYSQNGMHNVSVSLFCEMISLGINPNSSTLASILPCLSVL 374

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
             + +G+ +H  +++ G     FV +AL+ +Y+K G I  AE +F  +  +D A WN M+
Sbjct: 375 KLIRSGKEIHCFSIRHGLERSEFVVSALIDLYSKQGLIRVAETIFWLTLDKDLAIWNSMV 434

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGI 487
            GY  +G  + A  A R++   G  PD +T V VL  C+   ++ +GK+  + + K Y I
Sbjct: 435 AGYAVNGYSDSAFCALRLLQKVGLKPDHVTVVSVLPLCNQHHMLIQGKELHAYVIK-YCI 493

Query: 488 TPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
                    ++D+  + G F E+   + +     N + +  L+ +   H +
Sbjct: 494 NSVCSVNNALLDMYCKCG-FLEVAKEVFQLMTERNTVTYNILISSFGKHNH 543



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 140/289 (48%), Gaps = 12/289 (4%)

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
           + ++ L++C    +    ++LHA  +        V+   LV  Y K G +  A   FD +
Sbjct: 58  SLLLRLQSCPDFQE---ARRLHAAVLVGGHGHGTVLVAQLVRAYAKLGDVAHALRVFDGM 114

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG-IKSNEFTLASCLNGCSPVATLANG 373
             ++ FA+ A+I     AG    AL+ F  M  +G +  + FT    +  C+ +  +A G
Sbjct: 115 PRRNSFAWNAVIKGLVDAGRFSEALEMFWGMVNDGSVAVDGFTYPPVIKACAALGAVAQG 174

Query: 374 RLLHSIA---VKTGHLL-DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           R +  +    + +G+   ++FV  ALV M+AKCG +D+A  VF+   +RD A+W  MIGG
Sbjct: 175 RKVWEMVETDIASGNARPNVFVQCALVDMFAKCGCLDEARNVFESMQVRDLAAWTAMIGG 234

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGIT 488
            V  G   + ++ F  M  EG+  D +    V+SAC   G ++ G   H  ++K   G +
Sbjct: 235 TVHSGNWLEVVDLFNHMRSEGFGVDSLIAATVISACGRAGELQVGTALHGCAVKS--GAS 292

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
             I     ++D+  + G   E+ + +  +  + + + W +L+   S +G
Sbjct: 293 GDIYVSNALVDMYCKCG-CVEMADCLFWSTNSKDVVSWSSLIVGYSQNG 340



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 5/170 (2%)

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
            R LH+  +  GH     +   LV  YAK G +  A  VF G   R++ +WN +I G V 
Sbjct: 72  ARRLHAAVLVGGHGHGTVLVAQLVRAYAKLGDVAHALRVFDGMPRRNSFAWNAVIKGLVD 131

Query: 433 HGLGEKALEAFRMMLDEGYVP-DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG---IT 488
            G   +ALE F  M+++G V  D  T+  V+ AC+ +G + +G+K +  ++         
Sbjct: 132 AGRFSEALEMFWGMVNDGSVAVDGFTYPPVIKACAALGAVAQGRKVWEMVETDIASGNAR 191

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           P +     ++D+  + G   E  N + E+    +   W  ++G     GN
Sbjct: 192 PNVFVQCALVDMFAKCGCLDEARN-VFESMQVRDLAAWTAMIGGTVHSGN 240


>gi|413934541|gb|AFW69092.1| hypothetical protein ZEAMMB73_188982 [Zea mays]
          Length = 630

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 176/543 (32%), Positives = 295/543 (54%), Gaps = 12/543 (2%)

Query: 68  KAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADN---ALKVFYRIKDPDVVAWGAII 124
           + G  +HA A R G   D++L+ +L+  Y +  L D+   AL+ F  +   DVVA  +++
Sbjct: 53  RLGYSLHARAARAGLLADRYLANALLAFYVR--LPDHLPHALRAFDDLPRRDVVAHSSVL 110

Query: 125 TCLDQQGCCQEAAKIFNLMR------ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
               + G  + A      M       +  V P+   L++  +A     D R G  +H   
Sbjct: 111 AAFLRAGLPRRALLQLRTMASGGYGADDDVAPSAHALSASAKACAVLHDLRAGACVHGTT 170

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
              G+  D +V +ALV MY  +G      + FE +   D + + +L S F   +  D+ L
Sbjct: 171 VVRGYGDDGVVLSALVDMYGHSGAPGDARKAFEEMRAPDGICYTSLISAFVRNDWFDEAL 230

Query: 239 RIFYQML-LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           R F  ML   G  P+ CTF  ++ A  ++     G++ HA  +   L GN +V +S +DM
Sbjct: 231 RWFQAMLRTDGVWPDGCTFGSMMSALGNMKRARQGREAHAQVVTRGLCGNVIVESSTLDM 290

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K G + DA   FD +   +  ++ A++  Y Q G+ E  L  FR+M ++    + ++L
Sbjct: 291 YAKCGMMVDARKVFDRMKAPNAVSWCALLGGYCQTGKHEKVLSLFRQMHMQEQDDDWYSL 350

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
            + L  C+ ++ +  G+ +H  +++     D+ V +ALV +YAKCG++D A  VFK S++
Sbjct: 351 GTLLRSCAGLSAVKLGKEIHCRSMRMRGCGDVIVESALVDLYAKCGAVDYAYRVFKMSSV 410

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           R+  +WN MI G  ++G GE+A+  F  M+  G  PD I+F+ VL ACSH G++EEG+ +
Sbjct: 411 RNMITWNAMICGCAQNGHGERAISLFNEMVRGGVKPDYISFIGVLFACSHTGMVEEGRNY 470

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F+S+ K YGI P I+H+ C++D+L R     E E+ + +++   ++ +W  +LGAC+ H 
Sbjct: 471 FNSMSKDYGIPPGIEHYNCIVDLLSRVELLEEAEDLVNKSQFRDDSSLWAAILGACATHT 530

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           N ++  + A+K++ELEP+   +YV   ++  T G W D   VR L+ S+ +KKEP  SWI
Sbjct: 531 NPDVAVRVAKKMMELEPQYHLSYVLLENVYRTIGHWEDAVKVRKLMKSRKVKKEPGTSWI 590

Query: 598 EVD 600
             +
Sbjct: 591 NAN 593



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 109/454 (24%), Positives = 212/454 (46%), Gaps = 9/454 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMK------DMEKKFSKFSLSTV 57
           A R F  +P  +VV+ +++L  +  +G  ++ +    +M       D +   S  +LS  
Sbjct: 91  ALRAFDDLPRRDVVAHSSVLAAFLRAGLPRRALLQLRTMASGGYGADDDVAPSAHALSAS 150

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
            K  A    ++AG  VH   +  G   D  +  +LVDMY   G   +A K F  ++ PD 
Sbjct: 151 AKACAVLHDLRAGACVHGTTVVRGYGDDGVVLSALVDMYGHSGAPGDARKAFEEMRAPDG 210

Query: 118 VAWGAIITCLDQQGCCQEAAKIFN-LMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
           + + ++I+   +     EA + F  ++R   V P+     S++ A       R G   HA
Sbjct: 211 ICYTSLISAFVRNDWFDEALRWFQAMLRTDGVWPDGCTFGSMMSALGNMKRARQGREAHA 270

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
            +   G   + +V ++ + MY + G +    +VF+ +   ++VSW AL   +      ++
Sbjct: 271 QVVTRGLCGNVIVESSTLDMYAKCGMMVDARKVFDRMKAPNAVSWCALLGGYCQTGKHEK 330

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            L +F QM ++    +  +   +L++C+ LS V  GK++H  +++    G+ +V ++LVD
Sbjct: 331 VLSLFRQMHMQEQDDDWYSLGTLLRSCAGLSAVKLGKEIHCRSMRMRGCGDVIVESALVD 390

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           +Y K G ++ A   F   + +++  + A+I   AQ G  E A+  F +M   G+K +  +
Sbjct: 391 LYAKCGAVDYAYRVFKMSSVRNMITWNAMICGCAQNGHGERAISLFNEMVRGGVKPDYIS 450

Query: 357 LASCLNGCSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
               L  CS    +  GR   +S++   G    +     +V + ++   +++AE +   S
Sbjct: 451 FIGVLFACSHTGMVEEGRNYFNSMSKDYGIPPGIEHYNCIVDLLSRVELLEEAEDLVNKS 510

Query: 416 ALRDTAS-WNMMIGGYVKHGLGEKALEAFRMMLD 448
             RD +S W  ++G    H   + A+   + M++
Sbjct: 511 QFRDDSSLWAAILGACATHTNPDVAVRVAKKMME 544



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 40/71 (56%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A RVFK     N+++WNA++ G A++G G++ + LF  M     K    S   VL  
Sbjct: 398 VDYAYRVFKMSSVRNMITWNAMICGCAQNGHGERAISLFNEMVRGGVKPDYISFIGVLFA 457

Query: 61  FANSGYIKAGQ 71
            +++G ++ G+
Sbjct: 458 CSHTGMVEEGR 468


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 171/515 (33%), Positives = 280/515 (54%), Gaps = 4/515 (0%)

Query: 88  LSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESS 147
           L   L+D Y KCG    A KVF  +    +VAW ++I    + G  +EA  I+  M    
Sbjct: 112 LGNKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDG 171

Query: 148 VKPNQFVLTSLVRATTETGDQRCGESIH--AVICKYGFESDTLVGNALVSMYMENGRVSY 205
           + P++F  +S+ +A ++ G    G+  H  +V+   G  S+  VG+ALV MY + G++  
Sbjct: 172 ILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGV-SNVFVGSALVDMYAKFGKMRD 230

Query: 206 GSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSS 265
              V + +  +D V + AL   +  +    + L++F  M  KG + N  T   +L  C +
Sbjct: 231 ARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGN 290

Query: 266 LSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
           L D+  G+ +H   +K  L+      TSL+ MY + G ++D+   F    N +   +T++
Sbjct: 291 LEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSV 350

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH 385
           I    Q G  E+AL  FR+M    I  N FTL+S L  CS +A L  G+ +H+I +K G 
Sbjct: 351 IVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGL 410

Query: 386 LLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRM 445
            +D +V  AL+  Y KCGS + A +VF G    D  S N MI  Y ++G G +AL+ F  
Sbjct: 411 DIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSG 470

Query: 446 MLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAG 505
           M D G  P+ +T++ VLSAC++ GL+EEG   FSS +    I  T  H+ACM+D+LGRAG
Sbjct: 471 MKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDHYACMVDLLGRAG 530

Query: 506 KFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSD 565
           +  E E  I +  ++ + ++W  LL AC  HG++E+ ++   ++++L P+    +V  S+
Sbjct: 531 RLKEAEMLINQVNIS-DVVIWRTLLSACRIHGDVEMAKRVMNRVIDLAPEDGGTHVLLSN 589

Query: 566 ISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           + A+ G W+    +++ +    +KK P+ SW++V+
Sbjct: 590 LYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVE 624



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 127/447 (28%), Positives = 217/447 (48%), Gaps = 2/447 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF  +P  ++V+WN+++  Y  +G  ++ + ++  M        +F+ S+V K F++
Sbjct: 129 ARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSD 188

Query: 64  SGYIKAGQVVHAMAIRLGCALDK-FLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
            G +  GQ  H  ++ LG  +   F+  +LVDMY+K G   +A  V  ++   DVV + A
Sbjct: 189 LGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTA 248

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I      G   E+ ++F  M +  ++ N++ L+S++       D   G  IH +I K G
Sbjct: 249 LIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAG 308

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            ES      +L++MY   G V    +VF+   + + V+W ++          +  L  F 
Sbjct: 309 LESAVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFR 368

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           QML     PN  T   +L+ACSSL+ +  GKQ+HA  +K  LD +  VG +L+D Y K G
Sbjct: 369 QMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCG 428

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
             E A   F+ L   D+ +  ++I SYAQ G    AL+ F  M+  G++ N  T    L+
Sbjct: 429 STEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLS 488

Query: 363 GCSPVATLANGRLLHSIAVKTGHL-LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
            C+    L  G  + S A  +G++ L       +V +  + G + +AE +     + D  
Sbjct: 489 ACNNAGLLEEGCHIFSSARNSGNIELTKDHYACMVDLLGRAGRLKEAEMLINQVNISDVV 548

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLD 448
            W  ++     HG  E A      ++D
Sbjct: 549 IWRTLLSACRIHGDVEMAKRVMNRVID 575



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 177/350 (50%), Gaps = 9/350 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A+ V   +   +VV + AL+ GY+  G+  + + +F +M     + ++++LS+VL  
Sbjct: 228 MRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVC 287

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             N   + +G+++H + ++ G         SL+ MY +CGL D++LKVF +  +P+ V W
Sbjct: 288 CGNLEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTW 347

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I  L Q G  + A   F  M  SS+ PN F L+S++RA +       G+ IHA++ K
Sbjct: 348 TSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMK 407

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +G + D  VG AL+  Y + G       VF  +   D VS N++   +       + L++
Sbjct: 408 FGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQL 467

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS-----LV 295
           F  M   G +PN  T++ +L AC++   +  G     H    + +  ++  T      +V
Sbjct: 468 FSGMKDTGLEPNNVTWLGVLSACNNAGLLEEG----CHIFSSARNSGNIELTKDHYACMV 523

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM 345
           D+  ++G L++A +  + +   D+  +  ++++    G+ EMA +   ++
Sbjct: 524 DLLGRAGRLKEAEMLINQVNISDVVIWRTLLSACRIHGDVEMAKRVMNRV 573



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 136/284 (47%), Gaps = 5/284 (1%)

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKD 318
           +++ C  +  +    ++ +H +K     +H +G  L+D Y K G +  A   FD + ++ 
Sbjct: 83  LIQQCIGIKSITDITKIQSHALKRGF--HHSLGNKLIDAYLKCGSVVYARKVFDEVPHRH 140

Query: 319 LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHS 378
           + A+ ++I SY + G ++ A+  +++M  +GI  +EFT +S     S +  +  G+  H 
Sbjct: 141 IVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQRAHG 200

Query: 379 IAVKTG-HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGE 437
            +V  G  + ++FV +ALV MYAK G + DA  V      +D   +  +I GY  HG   
Sbjct: 201 QSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDG 260

Query: 438 KALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACM 497
           ++L+ FR M  +G   +E T   VL  C ++  +  G+     I K  G+   +     +
Sbjct: 261 ESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKA-GLESAVASQTSL 319

Query: 498 IDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
           + +  R G   +      +  + PN + W +++     +G  E+
Sbjct: 320 LTMYYRCGLVDDSLKVFKQF-INPNQVTWTSVIVGLVQNGREEI 362


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 182/553 (32%), Positives = 295/553 (53%), Gaps = 5/553 (0%)

Query: 50  SKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCAL-DKFLSCSLVDMYSKCGLADNALKV 108
           +   L+  L+    +G ++ G+ +HA  +  G A    FL+  L+ MYS C    +A+++
Sbjct: 16  TSLRLAAPLQSCGRAGDLRLGRCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRL 75

Query: 109 FYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ 168
           F  +  P++V+W  +++ L Q    ++A   F+ M  + + P QF L+S  RA      +
Sbjct: 76  FDAMPRPNLVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVPTQFALSSAARAAAALAAR 135

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228
             G  +H V  + GF+++  V + L  MY ++G +    RVF+ +  +D+V+W A+   +
Sbjct: 136 HAGAQLHCVGVRLGFDAELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGY 195

Query: 229 QDYESPDQGLRIFYQMLLKGF-KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGN 287
               + +  +  F  M  +G    +      +L A   L D    + +H+  +K   +  
Sbjct: 196 AKNGNLEAAVIAFRDMRREGLVGADQHVLCSVLSASGGLKDGWLARAIHSCVMKSGFEQE 255

Query: 288 HVVGTSLVDMYDKSGCLEDAG--VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM 345
             V  +L DMY K+  +++A   V  D   + ++ + T++I  Y +    E AL  F ++
Sbjct: 256 VAVRNALTDMYAKAADMDNAARVVKIDQ-GSLNVVSATSLIDGYIETDCIEKALLMFIEL 314

Query: 346 RLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSI 405
           R +G++ NEFT +S + GC+  A L  G  LH+  +KT  + D FVS+ L+ MY KCG I
Sbjct: 315 RRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAEVIKTSLISDSFVSSTLLDMYGKCGLI 374

Query: 406 DDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC 465
             +  +FK        +WN  I    +HG G +A+ AF  M   G  P+ ITFV +L+AC
Sbjct: 375 SLSIQLFKEIEYHTDIAWNAAINVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTAC 434

Query: 466 SHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV 525
           SH GL++EG K+F S+K  +GI P  +H++C+ID+ GRAG+  E E FI E  + PNA  
Sbjct: 435 SHAGLVDEGLKYFYSMKDHHGIEPKGEHYSCIIDMYGRAGRLDEAEKFIGEMPVKPNAYG 494

Query: 526 WENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSS 585
           W +LLGAC   GN EL E  A+ +++LEP     +V  S I A+ G+W D   VR L+  
Sbjct: 495 WCSLLGACRMRGNKELGEIAADNMMKLEPDNTGVHVSLSGIYASLGQWEDVKAVRKLMRD 554

Query: 586 QGIKKEPSCSWIE 598
             IKK P  SW++
Sbjct: 555 NRIKKLPGFSWVD 567



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 142/473 (30%), Positives = 224/473 (47%), Gaps = 24/473 (5%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A R+F +MP  N+VSW  L++G  ++   +  +  F SM       ++F+LS+  +  A 
Sbjct: 72  AVRLFDAMPRPNLVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVPTQFALSSAARAAAA 131

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                AG  +H + +RLG   + F++ +L DMYSK GL   A +VF ++   D VAW A+
Sbjct: 132 LAARHAGAQLHCVGVRLGFDAELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAM 191

Query: 124 ITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I    + G  + A   F ++ RE  V  +Q VL S++ A+    D     +IH+ + K G
Sbjct: 192 IDGYAKNGNLEAAVIAFRDMRREGLVGADQHVLCSVLSASGGLKDGWLARAIHSCVMKSG 251

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEA-IAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           FE +  V NAL  MY +   +   +RV +      + VS  +L   + + +  ++ L +F
Sbjct: 252 FEQEVAVRNALTDMYAKAADMDNAARVVKIDQGSLNVVSATSLIDGYIETDCIEKALLMF 311

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            ++  +G +PN  TF  ++K C+  + +  G QLHA  IK SL  +  V ++L+DMY K 
Sbjct: 312 IELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAEVIKTSLISDSFVSSTLLDMYGKC 371

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G +  +   F  +      A+ A I   AQ G    A++ F +M   GI+ N  T  S L
Sbjct: 372 GLISLSIQLFKEIEYHTDIAWNAAINVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLL 431

Query: 362 NGCSPVATLANG-------RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
             CS    +  G       +  H I  K  H       + ++ MY + G +D+AE     
Sbjct: 432 TACSHAGLVDEGLKYFYSMKDHHGIEPKGEHY------SCIIDMYGRAGRLDEAEKFIGE 485

Query: 415 SALRDTA-SWNMMIGGYVKHG---LGEKALEAFRMMLDEGYVPDEITFVVVLS 463
             ++  A  W  ++G     G   LGE A  A  MM  E   PD     V LS
Sbjct: 486 MPVKPNAYGWCSLLGACRMRGNKELGEIA--ADNMMKLE---PDNTGVHVSLS 533



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 117/228 (51%), Gaps = 3/228 (1%)

Query: 1   MELAKRVFK-SMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           M+ A RV K     LNVVS  +L++GY E+   +K + +F  ++    + ++F+ S+++K
Sbjct: 272 MDNAARVVKIDQGSLNVVSATSLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSSMIK 331

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           G A    ++ G  +HA  I+     D F+S +L+DMY KCGL   ++++F  I+    +A
Sbjct: 332 GCAMQALLEQGAQLHAEVIKTSLISDSFVSSTLLDMYGKCGLISLSIQLFKEIEYHTDIA 391

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG-ESIHAVI 178
           W A I  L Q G  +EA + F+ M  S ++PN     SL+ A +  G    G +  +++ 
Sbjct: 392 WNAAINVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTACSHAGLVDEGLKYFYSMK 451

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSR-VFEAIAHQDSVSWNALF 225
             +G E      + ++ MY   GR+    + + E     ++  W +L 
Sbjct: 452 DHHGIEPKGEHYSCIIDMYGRAGRLDEAEKFIGEMPVKPNAYGWCSLL 499


>gi|356528513|ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 651

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 171/586 (29%), Positives = 297/586 (50%), Gaps = 2/586 (0%)

Query: 18  SWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMA 77
           +WN+        G  Q  + LF  MK      +  +   VLK  A   +++  Q++HA  
Sbjct: 20  TWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQIIHAHV 79

Query: 78  IRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAA 137
           ++     + F+  + VDMY KCG  ++A  VF  +   D+ +W A++    Q G     +
Sbjct: 80  LKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSGFLDRLS 139

Query: 138 KIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMY 197
            +   MR S ++P+   +  L+ +           ++++   + G   D  V N L++ Y
Sbjct: 140 CLLRHMRLSGIRPDAVTVLLLIDSILRVKSLTSLGAVYSFGIRIGVHMDVSVANTLIAAY 199

Query: 198 MENGRVSYGSRVFEAIAH--QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCT 255
            + G +     +F+ I    +  VSWN++ + + ++E   + +  +  ML  GF P++ T
Sbjct: 200 SKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGGFSPDIST 259

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
            + +L +C     +  G  +H+H +K   D +  V  +L+ MY K G +  A   F+ ++
Sbjct: 260 ILNLLSSCMQPKALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSARFLFNGMS 319

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRL 375
           +K   ++T +I++YA+ G    A+  F  M   G K +  T+ + ++GC     L  G+ 
Sbjct: 320 DKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQTGALELGKW 379

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGL 435
           + + ++  G   ++ V  AL+ MYAKCG  +DA+ +F   A R   SW  MI     +G 
Sbjct: 380 IDNYSINNGLKDNVVVCNALIDMYAKCGGFNDAKELFYTMANRTVVSWTTMITACALNGD 439

Query: 436 GEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFA 495
            + ALE F MML+ G  P+ ITF+ VL AC+H GL+E G + F+ + + YGI P I H++
Sbjct: 440 VKDALELFFMMLEMGMKPNHITFLAVLQACAHGGLVERGLECFNMMTQKYGINPGIDHYS 499

Query: 496 CMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPK 555
           CM+D+LGR G   E    I      P++ +W  LL AC  HG +E+ +  +E+L ELEP+
Sbjct: 500 CMVDLLGRKGHLREALEIIKSMPFEPDSGIWSALLSACKLHGKMEMGKYVSEQLFELEPQ 559

Query: 556 MESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           +   YV  ++I A+   W   + +R  +    ++K P  S I+V+G
Sbjct: 560 VAVPYVEMANIYASAEMWEGVAAIRRNMKYLQVRKSPGQSIIQVNG 605



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/438 (24%), Positives = 202/438 (46%), Gaps = 4/438 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  VF  MP  ++ SWNA+L G+A+SG   ++  L   M+    +    ++  ++  
Sbjct: 104 LEDAHNVFVEMPVRDIASWNAMLLGFAQSGFLDRLSCLLRHMRLSGIRPDAVTVLLLIDS 163

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD--PDVV 118
                 + +   V++  IR+G  +D  ++ +L+  YSKCG   +A  +F  I      VV
Sbjct: 164 ILRVKSLTSLGAVYSFGIRIGVHMDVSVANTLIAAYSKCGNLCSAETLFDEINSGLRSVV 223

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +W ++I          +A   +  M +    P+   + +L+ +  +      G  +H+  
Sbjct: 224 SWNSMIAAYANFEKHVKAVNCYKGMLDGGFSPDISTILNLLSSCMQPKALFHGLLVHSHG 283

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K G +SD  V N L+ MY + G V     +F  ++ +  VSW  + S + +     + +
Sbjct: 284 VKLGCDSDVCVVNTLICMYSKCGDVHSARFLFNGMSDKTCVSWTVMISAYAEKGYMSEAM 343

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            +F  M   G KP++ T + ++  C     +  GK +  ++I + L  N VV  +L+DMY
Sbjct: 344 TLFNAMEAAGEKPDLVTVLALISGCGQTGALELGKWIDNYSINNGLKDNVVVCNALIDMY 403

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G   DA   F ++AN+ + ++T +IT+ A  G+ + AL+ F  M   G+K N  T  
Sbjct: 404 AKCGGFNDAKELFYTMANRTVVSWTTMITACALNGDVKDALELFFMMLEMGMKPNHITFL 463

Query: 359 SCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           + L  C+    +  G    + +  K G    +   + +V +  + G + +A  + K    
Sbjct: 464 AVLQACAHGGLVERGLECFNMMTQKYGINPGIDHYSCMVDLLGRKGHLREALEIIKSMPF 523

Query: 418 R-DTASWNMMIGGYVKHG 434
             D+  W+ ++     HG
Sbjct: 524 EPDSGIWSALLSACKLHG 541



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 78/146 (53%)

Query: 319 LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHS 378
           LF + +        G A+ AL  FR+M+  GI  N  T    L  C+ ++ L N +++H+
Sbjct: 18  LFTWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQIIHA 77

Query: 379 IAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEK 438
             +K+    ++FV TA V MY KCG ++DA  VF    +RD ASWN M+ G+ + G  ++
Sbjct: 78  HVLKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSGFLDR 137

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSA 464
                R M   G  PD +T ++++ +
Sbjct: 138 LSCLLRHMRLSGIRPDAVTVLLLIDS 163


>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
 gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
          Length = 696

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 172/551 (31%), Positives = 289/551 (52%), Gaps = 5/551 (0%)

Query: 51  KFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFY 110
           KF +++++        ++ G+ +H   I  G   D  L  +L+ MY+KCG  D+A +VF 
Sbjct: 10  KFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDAKRVFE 69

Query: 111 RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC 170
            ++  D+ AW +II+   + G  + A  ++  M    V+PN       +           
Sbjct: 70  GMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLAD 129

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
           G +IH  I       D ++ ++L++MY++   +    +VFE +  ++  S+ A+ S +  
Sbjct: 130 GRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQ 189

Query: 231 YESPDQGLRIFYQM-LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
                + L +F +M  ++  +PN  TF  IL A   L ++  G+++H H      D N V
Sbjct: 190 AGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVV 249

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           V  +LV MY K G   +A   FDS+  +++ ++T++I +YAQ G  + AL  F++M +E 
Sbjct: 250 VQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRMDVE- 308

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
              +  + +S LN C+ +  L  GR +H   V+  HL    + T+L++MYA+CGS+DDA 
Sbjct: 309 --PSGVSFSSALNACALLGALDEGREIHHRVVE-AHLASPQMETSLLSMYARCGSLDDAR 365

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
            VF     RD  S N MI  + +HG  ++AL  +R M  EG   D ITFV VL ACSH  
Sbjct: 366 RVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRRMEQEGIPADGITFVSVLVACSHTS 425

Query: 470 LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENL 529
           L+ + +  F S+   +G+ P ++H+ CM+D+LGR+G+  + E  +       +A+ W  L
Sbjct: 426 LVADCRDFFQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQTDAVAWMTL 485

Query: 530 LGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589
           L  C  HG++   E+ A K+ EL P     YVF S++ A   R++D   VR  +  +G+ 
Sbjct: 486 LSGCKRHGDLNRGERAARKVFELAPAETLPYVFLSNMYAAAKRFDDARRVRKEMEERGVT 545

Query: 590 KEPSCSWIEVD 600
              + S+IE+D
Sbjct: 546 TPVAVSYIEID 556



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/424 (27%), Positives = 215/424 (50%), Gaps = 15/424 (3%)

Query: 143 MRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGR 202
           M E  +  ++F++TSLV A T+      G  +H  +   GF +D  +  AL+ MY + G 
Sbjct: 1   MEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGS 60

Query: 203 VSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKA 262
           +    RVFE +  +D  +W+++ S +      +  + ++ +M+ +G +PN+ TF   L  
Sbjct: 61  LDDAKRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGG 120

Query: 263 CSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAY 322
           C+S++ +  G+ +H   +   +  + V+  SL++MY K   + +A   F+ +  +++ +Y
Sbjct: 121 CASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSY 180

Query: 323 TAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAV 381
           TA+I++Y QAGE   AL+ F +M ++E I+ N +T A+ L     +  L  GR +H    
Sbjct: 181 TAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLA 240

Query: 382 KTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALE 441
             G   ++ V  ALV MY KCGS  +A  VF     R+  SW  MI  Y +HG  ++AL 
Sbjct: 241 SRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALN 300

Query: 442 AFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDIL 501
            F+ M  E   P  ++F   L+AC+ +G ++EG++    + + +  +P ++    ++ + 
Sbjct: 301 LFKRMDVE---PSGVSFSSALNACALLGALDEGREIHHRVVEAHLASPQME--TSLLSMY 355

Query: 502 GRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYV 561
            R G   +        K T +A     ++ A + HG         ++ L +  +ME   +
Sbjct: 356 ARCGSLDDARRVFNRMK-TRDAFSCNAMIAAFTQHGR-------KKQALRIYRRMEQEGI 407

Query: 562 FPSD 565
            P+D
Sbjct: 408 -PAD 410



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 122/463 (26%), Positives = 237/463 (51%), Gaps = 9/463 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AKRVF+ M   ++ +W+++++ YA +G G+  + L+  M     + +  + +  L G A+
Sbjct: 64  AKRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCAS 123

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G+ +H   +      D  L  SL++MY KC     A KVF  +K  +V ++ A+
Sbjct: 124 VAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAM 183

Query: 124 ITCLDQQGCCQEAAKIFNLMRE-SSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I+   Q G   EA ++F+ M +  +++PN +   +++ A    G+   G  +H  +   G
Sbjct: 184 ISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRG 243

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F+++ +V NALV+MY + G      +VF+++  ++ +SW ++ + +  + +P + L +F 
Sbjct: 244 FDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFK 303

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M     +P+  +F   L AC+ L  +  G+++H   ++  L  +  + TSL+ MY + G
Sbjct: 304 RM---DVEPSGVSFSSALNACALLGALDEGREIHHRVVEAHL-ASPQMETSLLSMYARCG 359

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            L+DA   F+ +  +D F+  A+I ++ Q G  + AL+ +R+M  EGI ++  T  S L 
Sbjct: 360 SLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRRMEQEGIPADGITFVSVLV 419

Query: 363 GCSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DT 420
            CS  + +A+ R    S+ +  G +  +     +V +  + G + DAE + +    + D 
Sbjct: 420 ACSHTSLVADCRDFFQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQTDA 479

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
            +W  ++ G  +HG   +   A R + +    P E    V LS
Sbjct: 480 VAWMTLLSGCKRHGDLNRGERAARKVFE--LAPAETLPYVFLS 520


>gi|302801035|ref|XP_002982274.1| hypothetical protein SELMODRAFT_116224 [Selaginella moellendorffii]
 gi|300149866|gb|EFJ16519.1| hypothetical protein SELMODRAFT_116224 [Selaginella moellendorffii]
          Length = 920

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 189/603 (31%), Positives = 310/603 (51%), Gaps = 17/603 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKF-SKFSLSTVLK 59
           +E A  VF  +   +++ WNA +   A + +      L      +E    ++ S   +L 
Sbjct: 186 VESALEVFSRIQVPDLICWNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILS 245

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
              +   +   + +HA    LG   D  ++ +LV MY +CG  D ++ VF  +   + V+
Sbjct: 246 SCGDHSSLPLARSIHARVEELGFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVS 305

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES--IHAV 177
           W A+I    Q G    A  I+  M++   +PN+    + ++A   +  Q  GES  +H  
Sbjct: 306 WNAMIAAFAQCGHRSAAFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGW 365

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
           I   G E D +VG ALV+MY   G +      F+AI  ++ VSWNA+ + + D     + 
Sbjct: 366 IACAGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAREA 425

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGTSLVD 296
           + +F  M  +   PN  +++ +L  C    DV   + +HA  + + L      +   +V 
Sbjct: 426 MELFAAMKRQSLAPNKVSYLAVLGCCE---DVSEARSIHAEVVGNGLFAQESSIANGVVR 482

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           M+ +SG LE+A  AFD+   KD  ++   + + +   +   A+  F  M+ EG + ++FT
Sbjct: 483 MFARSGSLEEAVAAFDATVVKDSVSWNTKVAALSAREDLHGAITAFYTMQHEGFRPDKFT 542

Query: 357 LASCLNGCSPVATLANGRLLH---SIAVKTGHLLDMFVSTALVAMYAKCGS-IDDAEAVF 412
           L S ++ C+ + TL  GR +    S A++     D+ V++A++ M AKCGS +D+ E +F
Sbjct: 543 LVSVVDVCADLGTLELGRSIQQQLSAAIEVER--DVVVASAVMNMVAKCGSSVDECERLF 600

Query: 413 K--GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV-PDEITFVVVLSACSHMG 469
                  +D  +WN MI  Y +HG G KAL+ FR+M     V PD  TFV VLS CSH G
Sbjct: 601 ARMPDDRKDLVAWNTMIAAYAQHGHGRKALKLFRIMQQRSSVRPDSSTFVSVLSGCSHAG 660

Query: 470 LIEEGKKHFSSIKKIYGI-TPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWEN 528
           L+E+G   F   +++ GI    ++H+AC++D+LGR G   E E+FI +  L  +++VW +
Sbjct: 661 LVEDGIHCFFLAREVLGIEQQPVEHYACLVDVLGRMGYLREAEDFIRKMPLPADSVVWTS 720

Query: 529 LLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGI 588
           LLGACS +G++E  E+ A   +EL       YV  S+I A  GRW D   VR  ++ + +
Sbjct: 721 LLGACSSYGDLEGGERAARAFIELYRSDSVGYVVLSNIYAAAGRWEDSIRVREDMAERRV 780

Query: 589 KKE 591
           KK 
Sbjct: 781 KKR 783



 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 154/557 (27%), Positives = 268/557 (48%), Gaps = 25/557 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMK---DMEKKFSKFSLSTV 57
           ++ A   F ++    + +WN L+   A       V  L+  MK     E + +K ++  V
Sbjct: 75  LDDANAAFSALRSRGIATWNTLI---AAQSSPAAVFDLYTRMKLEERAENRPNKLTIIAV 131

Query: 58  LKGFAN----------SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALK 107
           L   A+          +  I   ++VH          D F++ +L+D Y KCG  ++AL+
Sbjct: 132 LGAIASGDPSSSSSSRAPSIAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALE 191

Query: 108 VFYRIKDPDVVAW-GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
           VF RI+ PD++ W  AI+ C         A  +   M    + PN+    +++ +  +  
Sbjct: 192 VFSRIQVPDLICWNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHS 251

Query: 167 DQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS 226
                 SIHA + + GF  D +V  ALV+MY   G V     VFEA+A ++ VSWNA+ +
Sbjct: 252 SLPLARSIHARVEELGFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVSWNAMIA 311

Query: 227 RFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILK-ACSSLS-DVGFGKQLHAHTIKHSL 284
            F           I+++M  +GF+PN  TF+  LK ACSS S D+G    LH       L
Sbjct: 312 AFAQCGHRSAAFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGL 371

Query: 285 DGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRK 344
           +G+ +VGT+LV MY  +G ++ A  AFD++  K++ ++ A++T+Y   G A  A++ F  
Sbjct: 372 EGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAREAMELFAA 431

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL-DMFVSTALVAMYAKCG 403
           M+ + +  N+ +  + L  C  V   +  R +H+  V  G    +  ++  +V M+A+ G
Sbjct: 432 MKRQSLAPNKVSYLAVLGCCEDV---SEARSIHAEVVGNGLFAQESSIANGVVRMFARSG 488

Query: 404 SIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           S+++A A F  + ++D+ SWN  +           A+ AF  M  EG+ PD+ T V V+ 
Sbjct: 489 SLEEAVAAFDATVVKDSVSWNTKVAALSAREDLHGAITAFYTMQHEGFRPDKFTLVSVVD 548

Query: 464 ACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAG-KFTEIENFITETKLTPN 522
            C+ +G +E G+     +     +   +   + +++++ + G    E E           
Sbjct: 549 VCADLGTLELGRSIQQQLSAAIEVERDVVVASAVMNMVAKCGSSVDECERLFARMPDDRK 608

Query: 523 ALV-WENLLGACSWHGN 538
            LV W  ++ A + HG+
Sbjct: 609 DLVAWNTMIAAYAQHGH 625



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 200/439 (45%), Gaps = 15/439 (3%)

Query: 41  SMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCG 100
           S KD +      +L+ +L+       +  G+ +H   ++ G A +  L   LV MYSKC 
Sbjct: 14  STKDHDDYIPIETLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCR 73

Query: 101 LADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVR 160
             D+A   F  ++   +  W  +I          +      L   +  +PN+  + +++ 
Sbjct: 74  SLDDANAAFSALRSRGIATWNTLIAAQSSPAAVFDLYTRMKLEERAENRPNKLTIIAVLG 133

Query: 161 ATTETGDQRC-----------GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRV 209
           A   +GD                 +H  I     E D  V  AL+  Y + G V     V
Sbjct: 134 AIA-SGDPSSSSSSRAPSIAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEV 192

Query: 210 FEAIAHQDSVSWN-ALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSD 268
           F  I   D + WN A+ +   + E PD+ L +  +M L+G  PN  +F+ IL +C   S 
Sbjct: 193 FSRIQVPDLICWNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSS 252

Query: 269 VGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITS 328
           +   + +HA   +    G+ VV T+LV MY + G ++++   F+++A ++  ++ A+I +
Sbjct: 253 LPLARSIHARVEELGFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVSWNAMIAA 312

Query: 329 YAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN-GCSPVAT-LANGRLLHSIAVKTGHL 386
           +AQ G    A   + +M+ EG + N+ T  + L   CS  +  L     LH      G  
Sbjct: 313 FAQCGHRSAAFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLE 372

Query: 387 LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM 446
            D+ V TALV MY   G+ID A A F     ++  SWN M+  Y  +G   +A+E F  M
Sbjct: 373 GDVMVGTALVTMYGSTGAIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAREAMELFAAM 432

Query: 447 LDEGYVPDEITFVVVLSAC 465
             +   P++++++ VL  C
Sbjct: 433 KRQSLAPNKVSYLAVLGCC 451



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 119/428 (27%), Positives = 185/428 (43%), Gaps = 52/428 (12%)

Query: 155 LTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA 214
           L  L+R      D   G  +H  I K G   + L+GN LV MY +   +   +  F A+ 
Sbjct: 27  LAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDDANAAFSALR 86

Query: 215 HQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF---KPNMCTFIVILKACSS------ 265
            +   +WN L +      SP     ++ +M L+     +PN  T I +L A +S      
Sbjct: 87  SRGIATWNTLIA---AQSSPAAVFDLYTRMKLEERAENRPNKLTIIAVLGAIASGDPSSS 143

Query: 266 ----LSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFA 321
                  +   + +H       L+ +  V T+L+D Y K GC+E A   F  +   DL  
Sbjct: 144 SSSRAPSIAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQVPDLIC 203

Query: 322 YTAIITSYAQAGE-AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIA 380
           + A I + A   E  + AL   R+M LEG+  N  +  + L+ C   ++L   R +H+  
Sbjct: 204 WNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARV 263

Query: 381 VKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKAL 440
            + G L D+ V+TALV MY +CGS+D++ AVF+  A+R+  SWN MI  + + G    A 
Sbjct: 264 EELGFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAF 323

Query: 441 EAFRMMLDEGYVPDEITFVVVLSAC---SHMGLIEEGKKH--------------FSSIKK 483
             +  M  EG+ P++ITFV  L A    S   L E    H               +++  
Sbjct: 324 AIYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLEGDVMVGTALVT 383

Query: 484 IYGITPTIKHFACMIDIL------------------GRAGKFTEIENFITETKLTPNALV 525
           +YG T  I       D +                  GRA +  E+   +    L PN + 
Sbjct: 384 MYGSTGAIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNKVS 443

Query: 526 WENLLGAC 533
           +  +LG C
Sbjct: 444 YLAVLGCC 451



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 133/292 (45%), Gaps = 19/292 (6%)

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
           T   +L+ C   +D+  G+QLH   +K  L  N ++G  LV MY K   L+DA  AF +L
Sbjct: 26  TLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDDANAAFSAL 85

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI---KSNEFTLASCLNGCSP----- 366
            ++ +  +  +I   AQ+  A +    + +M+LE     + N+ T+ + L   +      
Sbjct: 86  RSRGIATWNTLIA--AQSSPAAV-FDLYTRMKLEERAENRPNKLTIIAVLGAIASGDPSS 142

Query: 367 -----VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
                  ++A  R++H     +    D+FV+TAL+  Y KCG ++ A  VF    + D  
Sbjct: 143 SSSSRAPSIAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQVPDLI 202

Query: 422 SWNMMIGGYVKHG-LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            WN  I     +    ++AL   R M  EG +P+  +FV +LS+C     +   +   + 
Sbjct: 203 CWNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHAR 262

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
           ++++ G    +     ++ + GR G   E    + E     N + W  ++ A
Sbjct: 263 VEEL-GFLGDVVVATALVTMYGRCGSVDE-SIAVFEAMAVRNHVSWNAMIAA 312



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 84/214 (39%), Gaps = 35/214 (16%)

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
           TLA  L  C   A LA GR LH   VK G   +  +   LV MY+KC S+DDA A F   
Sbjct: 26  TLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDDANAAFSAL 85

Query: 416 ALRDTASWNMMIGG----------YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC 465
             R  A+WN +I            Y +  L E+A             P+++T + VL A 
Sbjct: 86  RSRGIATWNTLIAAQSSPAAVFDLYTRMKLEERAENR----------PNKLTIIAVLGAI 135

Query: 466 SHMGLIEEGKKHFSSIKKIYGITPTIKH---------FACMIDILGRAGKFTEIENFITE 516
           +             SI +   +   I+             ++D  G+ G         + 
Sbjct: 136 ASGDPSSSSSSRAPSIAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSR 195

Query: 517 TKLTPNALVWENLLGACSWHGNIELDEKDAEKLL 550
            ++ P+ + W   + AC+  GN   DE+    LL
Sbjct: 196 IQV-PDLICWNAAIMACA--GN---DERPDRALL 223


>gi|125559296|gb|EAZ04832.1| hypothetical protein OsI_27010 [Oryza sativa Indica Group]
          Length = 700

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 183/593 (30%), Positives = 302/593 (50%), Gaps = 5/593 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLKGFA 62
           A RVF  MP  N  +WNA++ G  ++G   + + +F  M  D       F+   V+K  A
Sbjct: 102 ALRVFDGMPRRNSFAWNAVIKGLVDAGRFSEALEMFWGMVNDGSVAVDGFTYPPVIKACA 161

Query: 63  NSGYIKAGQVVHAMA---IRLGCAL-DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
             G +  G+ V  M    I  G A  + F+ C+LVDM++KCG  D A  VF  ++  D+ 
Sbjct: 162 ALGAVAQGRKVWEMVEADIASGNARPNVFVQCALVDMFAKCGCLDEARNVFESMQVRDLA 221

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           AW A+I      G   E   +FN MR      +  +  +++ A    G+ + G ++H   
Sbjct: 222 AWTAMIGGTVHSGNWLEVVDLFNHMRSEGFGVDSLIAATVISACGRAGELQVGTALHGCA 281

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K G   D  V NALV MY + G V     +F +   +D VSW++L   +      +  +
Sbjct: 282 VKSGASGDIYVSNALVDMYCKCGCVEMADCLFWSTNSKDVVSWSSLIVGYSQNGMHNVSV 341

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            +F +M+  G  PN  T   IL   S L  +  GK++H  +I+H L+ +  V ++L+D+Y
Sbjct: 342 SLFCEMISLGINPNSSTLASILPCLSVLKLIRSGKEIHCFSIRHGLERSEFVVSALIDLY 401

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G +  A   F    +KDL  + +++  YA  G ++ A    R ++  G+K +  T+ 
Sbjct: 402 SKQGLIRVAETIFWLTLDKDLAIWNSMVAGYAVNGYSDSAFCALRLLQKVGLKPDHVTVV 461

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
           S L  C+    L  G+ LH+  +K        V+ AL+ MY KCG ++ A+ VF+    R
Sbjct: 462 SVLPLCNQHHMLIQGKELHAYVIKYCINSVCSVNNALLDMYCKCGFLEVAKEVFQLMTER 521

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           +T ++N++I  + KH   ++AL  F +M  +G  PD++TFV +LS CSH GLI++G   +
Sbjct: 522 NTVTYNILISSFGKHNHEDQALSFFDLMKRDGIAPDKVTFVALLSCCSHAGLIDKGLHLY 581

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            S+   Y I+P  +H++C++D+  R GK  E   F++     P   V   LL AC  H  
Sbjct: 582 HSMLHDYNISPEKEHYSCIVDLYSRCGKLDEAWCFMSNMAEEPEIDVLGGLLAACRVHNR 641

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
           +++ E   +++ E  P     ++  S+I A  G W+D + +R ++  + +KKE
Sbjct: 642 MDIAELVGKRIFEQNPNDPGYHILLSNIYADAGMWSDVTRIRTMIQERNLKKE 694



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 112/415 (26%), Positives = 200/415 (48%), Gaps = 13/415 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+ VF+SM   ++ +W A++ G   SG+  +V+ LF  M+           +TV+  
Sbjct: 205 LDEARNVFESMQVRDLAAWTAMIGGTVHSGNWLEVVDLFNHMRSEGFGVDSLIAATVISA 264

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              +G ++ G  +H  A++ G + D ++S +LVDMY KCG  + A  +F+     DVV+W
Sbjct: 265 CGRAGELQVGTALHGCAVKSGASGDIYVSNALVDMYCKCGCVEMADCLFWSTNSKDVVSW 324

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I    Q G    +  +F  M    + PN   L S++   +     R G+ IH    +
Sbjct: 325 SSLIVGYSQNGMHNVSVSLFCEMISLGINPNSSTLASILPCLSVLKLIRSGKEIHCFSIR 384

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +G E    V +AL+ +Y + G +     +F     +D   WN++ + +      D     
Sbjct: 385 HGLERSEFVVSALIDLYSKQGLIRVAETIFWLTLDKDLAIWNSMVAGYAVNGYSDSAFCA 444

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
              +   G KP+  T + +L  C+    +  GK+LHA+ IK+ ++    V  +L+DMY K
Sbjct: 445 LRLLQKVGLKPDHVTVVSVLPLCNQHHMLIQGKELHAYVIKYCINSVCSVNNALLDMYCK 504

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G LE A   F  +  ++   Y  +I+S+ +    + AL  F  M+ +GI  ++ T  + 
Sbjct: 505 CGFLEVAKEVFQLMTERNTVTYNILISSFGKHNHEDQALSFFDLMKRDGIAPDKVTFVAL 564

Query: 361 LNGCSPVATLANG-RLLHSIAVKTGHLLDMFVS------TALVAMYAKCGSIDDA 408
           L+ CS    +  G  L HS+      L D  +S      + +V +Y++CG +D+A
Sbjct: 565 LSCCSHAGLIDKGLHLYHSM------LHDYNISPEKEHYSCIVDLYSRCGKLDEA 613



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 128/471 (27%), Positives = 223/471 (47%), Gaps = 7/471 (1%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           +HA  +  G      L   LV  Y+K G   +AL+VF  +   +  AW A+I  L   G 
Sbjct: 70  LHAAVLVGGHGHGTVLVAQLVRAYAKLGDVAHALRVFDGMPRRNSFAWNAVIKGLVDAGR 129

Query: 133 CQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETG----DQRCGESIHAVICKYGFESDT 187
             EA ++F  ++ + SV  + F    +++A    G     ++  E + A I       + 
Sbjct: 130 FSEALEMFWGMVNDGSVAVDGFTYPPVIKACAALGAVAQGRKVWEMVEADIASGNARPNV 189

Query: 188 LVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK 247
            V  ALV M+ + G +     VFE++  +D  +W A+        +  + + +F  M  +
Sbjct: 190 FVQCALVDMFAKCGCLDEARNVFESMQVRDLAAWTAMIGGTVHSGNWLEVVDLFNHMRSE 249

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           GF  +      ++ AC    ++  G  LH   +K    G+  V  +LVDMY K GC+E A
Sbjct: 250 GFGVDSLIAATVISACGRAGELQVGTALHGCAVKSGASGDIYVSNALVDMYCKCGCVEMA 309

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367
              F S  +KD+ +++++I  Y+Q G   +++  F +M   GI  N  TLAS L   S +
Sbjct: 310 DCLFWSTNSKDVVSWSSLIVGYSQNGMHNVSVSLFCEMISLGINPNSSTLASILPCLSVL 369

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
             + +G+ +H  +++ G     FV +AL+ +Y+K G I  AE +F  +  +D A WN M+
Sbjct: 370 KLIRSGKEIHCFSIRHGLERSEFVVSALIDLYSKQGLIRVAETIFWLTLDKDLAIWNSMV 429

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGI 487
            GY  +G  + A  A R++   G  PD +T V VL  C+   ++ +GK+  + + K Y I
Sbjct: 430 AGYAVNGYSDSAFCALRLLQKVGLKPDHVTVVSVLPLCNQHHMLIQGKELHAYVIK-YCI 488

Query: 488 TPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
                    ++D+  + G F E+   + +     N + +  L+ +   H +
Sbjct: 489 NSVCSVNNALLDMYCKCG-FLEVAKEVFQLMTERNTVTYNILISSFGKHNH 538



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 140/289 (48%), Gaps = 12/289 (4%)

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
           + ++ L++C    +    ++LHA  +        V+   LV  Y K G +  A   FD +
Sbjct: 53  SLLLRLQSCPDFQE---ARRLHAAVLVGGHGHGTVLVAQLVRAYAKLGDVAHALRVFDGM 109

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG-IKSNEFTLASCLNGCSPVATLANG 373
             ++ FA+ A+I     AG    AL+ F  M  +G +  + FT    +  C+ +  +A G
Sbjct: 110 PRRNSFAWNAVIKGLVDAGRFSEALEMFWGMVNDGSVAVDGFTYPPVIKACAALGAVAQG 169

Query: 374 RLLHSIA---VKTGHLL-DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           R +  +    + +G+   ++FV  ALV M+AKCG +D+A  VF+   +RD A+W  MIGG
Sbjct: 170 RKVWEMVEADIASGNARPNVFVQCALVDMFAKCGCLDEARNVFESMQVRDLAAWTAMIGG 229

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGIT 488
            V  G   + ++ F  M  EG+  D +    V+SAC   G ++ G   H  ++K   G +
Sbjct: 230 TVHSGNWLEVVDLFNHMRSEGFGVDSLIAATVISACGRAGELQVGTALHGCAVKS--GAS 287

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
             I     ++D+  + G   E+ + +  +  + + + W +L+   S +G
Sbjct: 288 GDIYVSNALVDMYCKCG-CVEMADCLFWSTNSKDVVSWSSLIVGYSQNG 335



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 5/170 (2%)

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
            R LH+  +  GH     +   LV  YAK G +  A  VF G   R++ +WN +I G V 
Sbjct: 67  ARRLHAAVLVGGHGHGTVLVAQLVRAYAKLGDVAHALRVFDGMPRRNSFAWNAVIKGLVD 126

Query: 433 HGLGEKALEAFRMMLDEGYVP-DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG---IT 488
            G   +ALE F  M+++G V  D  T+  V+ AC+ +G + +G+K +  ++         
Sbjct: 127 AGRFSEALEMFWGMVNDGSVAVDGFTYPPVIKACAALGAVAQGRKVWEMVEADIASGNAR 186

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
           P +     ++D+  + G   E  N + E+    +   W  ++G     GN
Sbjct: 187 PNVFVQCALVDMFAKCGCLDEARN-VFESMQVRDLAAWTAMIGGTVHSGN 235


>gi|357138657|ref|XP_003570906.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Brachypodium distachyon]
          Length = 608

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 164/470 (34%), Positives = 265/470 (56%), Gaps = 2/470 (0%)

Query: 134 QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNAL 193
           + A ++F  M  ++++P+ + L  L+ A     +     S HA++C+ G ++     ++L
Sbjct: 98  RTALRLFLRMLRAALRPDAYTLPFLLLAAARAPEPPFARSAHALLCRLGLQAHDHTVHSL 157

Query: 194 VSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG-FKPN 252
           V+MY   G      RVF+ I  +D VSWNA+   ++         R+F  M+ +G   PN
Sbjct: 158 VTMYSNLGDPLAARRVFDGIPRRDVVSWNAMMKAYERAGMAADVARMFRDMIDEGAVAPN 217

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
             T  V+L AC    D+  G+ L        ++   +VG++LV MY+K G + +A   FD
Sbjct: 218 EVTVAVVLAACRDAGDLVLGRWLEEWVRSAEIEVGSLVGSALVGMYEKCGEMTEARRVFD 277

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
            +A+KD+ A+ A+IT YAQ G ++ A+  F  MR EG   ++ TL   L+ C+ V  L  
Sbjct: 278 GIAHKDVVAWNAMITGYAQNGMSKEAIALFHSMRQEGASPDKITLVGVLSACAAVGALEL 337

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
           G  L + A   G   +++V TALV MY+KCG +D A  VF     ++ A+WN +I G   
Sbjct: 338 GTELDAYASHRGLYGNVYVGTALVDMYSKCGDLDKAVQVFGKLPCKNEATWNALICGLAF 397

Query: 433 HGLGEKALEAFRMML-DEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI 491
           +G G +A+  F +M  +EG  PD+ITF+ VLSAC H GL+++G++ F+S+   + I P I
Sbjct: 398 NGRGHEAIRQFEVMRNEEGLRPDDITFIGVLSACVHAGLLKDGRRWFNSLTSEFQIIPKI 457

Query: 492 KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551
           +H++CM+D+L RAG   E  +F+ +     +A++   LL AC    N+E+ E+   ++++
Sbjct: 458 EHYSCMVDLLARAGHLEEAWDFVEKIPGKADAVMLGALLAACRKCKNVEVSERVINRIMQ 517

Query: 552 LEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           LEP    NYV  S I A+  R +D + +R L+  +G+ K P CSW+EV G
Sbjct: 518 LEPSNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVSKIPGCSWVEVSG 567



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/456 (27%), Positives = 208/456 (45%), Gaps = 37/456 (8%)

Query: 12  PELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQ 71
           P     S+N  L  +A S   +  + LF  M     +   ++L  +L   A +      +
Sbjct: 78  PAPTAFSYNVTLRFFA-STRPRTALRLFLRMLRAALRPDAYTLPFLLLAAARAPEPPFAR 136

Query: 72  VVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQG 131
             HA+  RLG         SLV MYS  G    A +VF  I   DVV+W A++   ++ G
Sbjct: 137 SAHALLCRLGLQAHDHTVHSLVTMYSNLGDPLAARRVFDGIPRRDVVSWNAMMKAYERAG 196

Query: 132 CCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVG 190
              + A++F +++ E +V PN+  +  ++ A  + GD   G  +   +     E  +LVG
Sbjct: 197 MAADVARMFRDMIDEGAVAPNEVTVAVVLAACRDAGDLVLGRWLEEWVRSAEIEVGSLVG 256

Query: 191 NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFK 250
           +ALV MY + G ++   RVF+ IAH+D V+WNA+ + +       + + +F+ M  +G  
Sbjct: 257 SALVGMYEKCGEMTEARRVFDGIAHKDVVAWNAMITGYAQNGMSKEAIALFHSMRQEGAS 316

Query: 251 PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVA 310
           P+  T + +L AC+++  +  G +L A+     L GN  VGT+LVDMY K G L+ A   
Sbjct: 317 PDKITLVGVLSACAAVGALELGTELDAYASHRGLYGNVYVGTALVDMYSKCGDLDKAVQV 376

Query: 311 FDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR-LEGIKSNEFTLASCLNGCSPVAT 369
           F  L  K+   + A+I   A  G    A++ F  MR  EG++ ++ T    L+ C     
Sbjct: 377 FGKLPCKNEATWNALICGLAFNGRGHEAIRQFEVMRNEEGLRPDDITFIGVLSACVHAGL 436

Query: 370 LANGRL--------------------LHSIAVKTGHL-------------LDMFVSTALV 396
           L +GR                     +  +  + GHL              D  +  AL+
Sbjct: 437 LKDGRRWFNSLTSEFQIIPKIEHYSCMVDLLARAGHLEEAWDFVEKIPGKADAVMLGALL 496

Query: 397 AMYAKCGSIDDAEAVF-KGSALRDTASWNMMIGGYV 431
           A   KC +++ +E V  +   L  + SWN ++   +
Sbjct: 497 AACRKCKNVEVSERVINRIMQLEPSNSWNYVVSSKI 532



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 170/367 (46%), Gaps = 5/367 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLKGFA 62
           A+RVF  +P  +VVSWNA++  Y  +G    V  +F  M D      ++ +++ VL    
Sbjct: 170 ARRVFDGIPRRDVVSWNAMMKAYERAGMAADVARMFRDMIDEGAVAPNEVTVAVVLAACR 229

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           ++G +  G+ +          +   +  +LV MY KCG    A +VF  I   DVVAW A
Sbjct: 230 DAGDLVLGRWLEEWVRSAEIEVGSLVGSALVGMYEKCGEMTEARRVFDGIAHKDVVAWNA 289

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +IT   Q G  +EA  +F+ MR+    P++  L  ++ A    G    G  + A     G
Sbjct: 290 MITGYAQNGMSKEAIALFHSMRQEGASPDKITLVGVLSACAAVGALELGTELDAYASHRG 349

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
              +  VG ALV MY + G +    +VF  +  ++  +WNAL           + +R F 
Sbjct: 350 LYGNVYVGTALVDMYSKCGDLDKAVQVFGKLPCKNEATWNALICGLAFNGRGHEAIRQFE 409

Query: 243 QML-LKGFKPNMCTFIVILKACSSLSDVGFGKQ-LHAHTIKHSLDGNHVVGTSLVDMYDK 300
            M   +G +P+  TFI +L AC     +  G++  ++ T +  +       + +VD+  +
Sbjct: 410 VMRNEEGLRPDDITFIGVLSACVHAGLLKDGRRWFNSLTSEFQIIPKIEHYSCMVDLLAR 469

Query: 301 SGCLEDAGVAFDSLANK-DLFAYTAIITSYAQAGEAEMALKCF-RKMRLEGIKSNEFTLA 358
           +G LE+A    + +  K D     A++ +  +    E++ +   R M+LE   S  + ++
Sbjct: 470 AGHLEEAWDFVEKIPGKADAVMLGALLAACRKCKNVEVSERVINRIMQLEPSNSWNYVVS 529

Query: 359 SCLNGCS 365
           S +   S
Sbjct: 530 SKIYASS 536



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 88/167 (52%), Gaps = 1/167 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A+RVF  +   +VV+WNA++ GYA++G  ++ + LF SM+       K +L  VL  
Sbjct: 269 MTEARRVFDGIAHKDVVAWNAMITGYAQNGMSKEAIALFHSMRQEGASPDKITLVGVLSA 328

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A  G ++ G  + A A   G   + ++  +LVDMYSKCG  D A++VF ++   +   W
Sbjct: 329 CAAVGALELGTELDAYASHRGLYGNVYVGTALVDMYSKCGDLDKAVQVFGKLPCKNEATW 388

Query: 121 GAIITCLDQQGCCQEAAKIFNLMR-ESSVKPNQFVLTSLVRATTETG 166
            A+I  L   G   EA + F +MR E  ++P+      ++ A    G
Sbjct: 389 NALICGLAFNGRGHEAIRQFEVMRNEEGLRPDDITFIGVLSACVHAG 435


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 183/598 (30%), Positives = 311/598 (52%), Gaps = 48/598 (8%)

Query: 42  MKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCAL---DKFLSCSLVDMYSK 98
           ++ +      + L+ +L  +A SG +        +A RL  A+   + F   +L+   + 
Sbjct: 36  LRTLPHPPPTYVLNHLLTAYARSGRLP-------LARRLFDAMPDPNLFTRNALLSALAH 88

Query: 99  CGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFN-LMRESSV------KPN 151
             L  +  ++F  +   D V++ A+I      G    AA  +  L+RE +V      +P+
Sbjct: 89  ARLLPDMDRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPS 148

Query: 152 QFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF- 210
           +  ++ +V A +  GD+  G  +H  I + GF +     + LV MY + G +    RVF 
Sbjct: 149 RITMSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFD 208

Query: 211 ------------------------------EAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
                                         EA+  +DS++W  + +         + L +
Sbjct: 209 EMVVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDV 268

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M  +G   +  TF  IL AC +L+    GKQ+HA+TI+   DGN  VG++LVDMY K
Sbjct: 269 FRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSK 328

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
              +  A   F  +  K++ ++TA+I  Y Q G  E A++ F +M+ +GIK N+FTL S 
Sbjct: 329 CRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSV 388

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           ++ C+ +A+L  G   H +A+ +G    + VS+ALV +Y KCGSI+DA  +F      D 
Sbjct: 389 ISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQ 448

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            S+  ++ GY + G  ++ ++ F  ML +G  P+ +TF+ VLSACS  GL+E+G  +F S
Sbjct: 449 VSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHS 508

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +++ +GI     H+ CMID+  R+G+  E E FI +    P+A+ W  LL AC   G++E
Sbjct: 509 MQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACRLRGDME 568

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           + +  AE LL+ +P+  ++YV    + A++G W++ + +R  +  + +KKEP CSWI+
Sbjct: 569 IGKWAAENLLKTDPQNPASYVLLCSMHASKGEWSEVALLRRGMRDRQVKKEPGCSWIK 626



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 137/509 (26%), Positives = 224/509 (44%), Gaps = 73/509 (14%)

Query: 6   RVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK-------KFSKFSLSTVL 58
           R+F SMP+ + VS+NAL+ G++ +G   +    + ++   E        + S+ ++S ++
Sbjct: 97  RLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRITMSGMV 156

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF--------- 109
              +  G    G+ VH   +RLG     F    LVDMY+K GL  +A +VF         
Sbjct: 157 MAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNVV 216

Query: 110 ---------YRIK-------------DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESS 147
                     R K             D D + W  ++T L Q G   EA  +F  MR   
Sbjct: 217 MYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEG 276

Query: 148 VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGS 207
           V  +Q+   S++ A         G+ IHA   +  ++ +  VG+ALV MY +   +    
Sbjct: 277 VGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAE 336

Query: 208 RVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLS 267
            VF  +  ++ +SW A+   +      ++ +R+F +M   G KPN  T   ++ +C++L+
Sbjct: 337 AVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLA 396

Query: 268 DVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIIT 327
            +  G Q H   +   L     V ++LV +Y K G +EDA   FD +   D  +YTA+++
Sbjct: 397 SLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVS 456

Query: 328 SYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG-RLLHSIAVKTGHL 386
            YAQ G+A+  +  F KM L+G+K N  T    L+ CS    +  G    HS+    G +
Sbjct: 457 GYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIV 516

Query: 387 LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM 446
           L     T ++ +Y++ G + +AE                               E  R M
Sbjct: 517 LLDDHYTCMIDLYSRSGRLKEAE-------------------------------EFIRQM 545

Query: 447 LDEGYVPDEITFVVVLSACSHMGLIEEGK 475
                 PD I +  +LSAC   G +E GK
Sbjct: 546 ---PRCPDAIGWATLLSACRLRGDMEIGK 571



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 159/311 (51%), Gaps = 7/311 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ VF++M + + ++W  ++ G  ++G   + + +F  M+       +++  ++L  
Sbjct: 231 VEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTA 290

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                  + G+ +HA  IR     + F+  +LVDMYSKC     A  VF R+   ++++W
Sbjct: 291 CGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISW 350

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    Q GC +EA ++F+ M+   +KPN F L S++ +         G   H +   
Sbjct: 351 TAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQFHCMALV 410

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G      V +ALV++Y + G +    R+F+ +   D VS+ AL S +  +    + + +
Sbjct: 411 SGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDL 470

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFG-KQLHAHTIKHS---LDGNHVVGTSLVD 296
           F +MLLKG KPN  TFI +L ACS    V  G    H+    H    LD ++   T ++D
Sbjct: 471 FEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHY---TCMID 527

Query: 297 MYDKSGCLEDA 307
           +Y +SG L++A
Sbjct: 528 LYSRSGRLKEA 538


>gi|224058449|ref|XP_002299515.1| predicted protein [Populus trichocarpa]
 gi|222846773|gb|EEE84320.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 169/513 (32%), Positives = 283/513 (55%), Gaps = 5/513 (0%)

Query: 88  LSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII-TCLDQQGCCQEAAKIFNLMRES 146
            S +++ MY++CG   +A+KVF  I +PDVV+W   I T  D      EA ++F ++   
Sbjct: 11  FSNAVMSMYARCGREVDAIKVFDEIAEPDVVSWTERIGTASDGH----EAVELFRIVLSL 66

Query: 147 SVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYG 206
            +  N++ L +++           G+ I A+  K G+     V NALVSMY + G++   
Sbjct: 67  GLDVNEYTLINVLSMIGGVKFLNAGKQIQALCHKTGYFQVVSVSNALVSMYGKCGQICDA 126

Query: 207 SRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266
            RVF  +  +DSVSWN+L S   +    +Q L +FYQM     +P + T   IL+A S+ 
Sbjct: 127 CRVFYNMIIRDSVSWNSLISACSENGFVNQALEVFYQMRELSLQPTIHTLASILEAVSNS 186

Query: 267 SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
           ++     Q+H+  +K     +  + + L+  Y +   ++++   F  +   +L     +I
Sbjct: 187 NNTKQVIQIHSLVVKCGFMFDVSMISCLITAYGRCNSMDESKRVFAEIDKVNLVHLNTMI 246

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL 386
           T++ +AG    AL  ++ +     K +  T +  L  CS +  +  GR +HS+ +KTG  
Sbjct: 247 TTFVRAGYYTDALALYQTIWSLHRKVDSRTFSIILKACSAITDMQLGRAVHSLVLKTGFD 306

Query: 387 LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM 446
            D FV ++++ +Y KCGSI  AE  F+ S++   A+WN M+ GY  HG  ++  + F  M
Sbjct: 307 QDSFVESSVIDIYCKCGSIGQAEKAFRSSSMNSLAAWNAMMMGYAHHGCYQEVFDLFNKM 366

Query: 447 LDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGK 506
              G  PDEIT++ VLS+C H GL++E + +  S+ +++GI P ++H+ACMID+LGR G 
Sbjct: 367 SQFGIEPDEITYLGVLSSCCHGGLVKEARHYLDSMFELHGIIPHLEHYACMIDLLGRVGL 426

Query: 507 FTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDI 566
             + +  I    + P+  +W+ LL AC+ HG++EL    A KLLE+ P+ ES Y+  S++
Sbjct: 427 LEDAKKTIDHMPIQPDVHIWQILLSACNIHGHVELGRVAARKLLEIHPENESAYILLSNL 486

Query: 567 SATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            A+ G WN    +R  +  + ++KEP  SWI+V
Sbjct: 487 YASVGMWNAVGRLRKEMKEKNLRKEPGSSWIQV 519



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 119/469 (25%), Positives = 224/469 (47%), Gaps = 6/469 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A +VF  + E +VVSW   +     + DG + + LF  +  +    ++++L  VL     
Sbjct: 28  AIKVFDEIAEPDVVSWTERI---GTASDGHEAVELFRIVLSLGLDVNEYTLINVLSMIGG 84

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
             ++ AG+ + A+  + G      +S +LV MY KCG   +A +VFY +   D V+W ++
Sbjct: 85  VKFLNAGKQIQALCHKTGYFQVVSVSNALVSMYGKCGQICDACRVFYNMIIRDSVSWNSL 144

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   + G   +A ++F  MRE S++P    L S++ A + + + +    IH+++ K GF
Sbjct: 145 ISACSENGFVNQALEVFYQMRELSLQPTIHTLASILEAVSNSNNTKQVIQIHSLVVKCGF 204

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D  + + L++ Y     +    RVF  I   + V  N + + F         L ++  
Sbjct: 205 MFDVSMISCLITAYGRCNSMDESKRVFAEIDKVNLVHLNTMITTFVRAGYYTDALALYQT 264

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           +     K +  TF +ILKACS+++D+  G+ +H+  +K   D +  V +S++D+Y K G 
Sbjct: 265 IWSLHRKVDSRTFSIILKACSAITDMQLGRAVHSLVLKTGFDQDSFVESSVIDIYCKCGS 324

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +  A  AF S +   L A+ A++  YA  G  +     F KM   GI+ +E T    L+ 
Sbjct: 325 IGQAEKAFRSSSMNSLAAWNAMMMGYAHHGCYQEVFDLFNKMSQFGIEPDEITYLGVLSS 384

Query: 364 CSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DTA 421
           C     +   R  L S+    G +  +     ++ +  + G ++DA+       ++ D  
Sbjct: 385 CCHGGLVKEARHYLDSMFELHGIIPHLEHYACMIDLLGRVGLLEDAKKTIDHMPIQPDVH 444

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
            W +++     HG  E    A R +L E +  +E  ++++ +  + +G+
Sbjct: 445 IWQILLSACNIHGHVELGRVAARKLL-EIHPENESAYILLSNLYASVGM 492



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 83/166 (50%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ +KRVF  + ++N+V  N ++  +  +G     + L+ ++  + +K    + S +LK 
Sbjct: 224 MDESKRVFAEIDKVNLVHLNTMITTFVRAGYYTDALALYQTIWSLHRKVDSRTFSIILKA 283

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    ++ G+ VH++ ++ G   D F+  S++D+Y KCG    A K F       + AW
Sbjct: 284 CSAITDMQLGRAVHSLVLKTGFDQDSFVESSVIDIYCKCGSIGQAEKAFRSSSMNSLAAW 343

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
            A++      GC QE   +FN M +  ++P++     ++ +    G
Sbjct: 344 NAMMMGYAHHGCYQEVFDLFNKMSQFGIEPDEITYLGVLSSCCHGG 389



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 7/172 (4%)

Query: 389 MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
           M  S A+++MYA+CG   DA  VF   A  D  SW   IG       G +A+E FR++L 
Sbjct: 9   MHFSNAVMSMYARCGREVDAIKVFDEIAEPDVVSWTERIGTASD---GHEAVELFRIVLS 65

Query: 449 EGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFT 508
            G   +E T + VLS    +  +  GK+   ++    G    +     ++ + G+ G+  
Sbjct: 66  LGLDVNEYTLINVLSMIGGVKFLNAGKQ-IQALCHKTGYFQVVSVSNALVSMYGKCGQIC 124

Query: 509 EIENFITETKLTPNALVWENLLGACSWHG--NIELDEKDAEKLLELEPKMES 558
           +    +    +  +++ W +L+ ACS +G  N  L+     + L L+P + +
Sbjct: 125 DACR-VFYNMIIRDSVSWNSLISACSENGFVNQALEVFYQMRELSLQPTIHT 175


>gi|334184142|ref|NP_178563.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334302883|sp|Q9SJ73.3|PP148_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g04860
 gi|330250783|gb|AEC05877.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 692

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 196/586 (33%), Positives = 298/586 (50%), Gaps = 9/586 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F  MPE + V WNAL+ GY+ +G       LF  M       S  +L  +L     
Sbjct: 104 AQMLFDEMPERDTVVWNALICGYSRNGYECDAWKLFIVMLQQGFSPSATTLVNLLPFCGQ 163

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G++  G+ VH +A + G  LD  +  +L+  YSKC    +A  +F  +KD   V+W  +
Sbjct: 164 CGFVSQGRSVHGVAAKSGLELDSQVKNALISFYSKCAELGSAEVLFREMKDKSTVSWNTM 223

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q G  +EA  +F  M E +V+ +   + +L+ A          E +H ++ K G 
Sbjct: 224 IGAYSQSGLQEEAITVFKNMFEKNVEISPVTIINLLSAHVSH------EPLHCLVVKCGM 277

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDS-VSWNALFSRFQDYESPDQGLRIFY 242
            +D  V  +LV  Y   G +    R++ A A QDS V   ++ S + +    D  +  F 
Sbjct: 278 VNDISVVTSLVCAYSRCGCLVSAERLY-ASAKQDSIVGLTSIVSCYAEKGDMDIAVVYFS 336

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +      K +    + IL  C   S +  G  LH + IK  L    +V   L+ MY K  
Sbjct: 337 KTRQLCMKIDAVALVGILHGCKKSSHIDIGMSLHGYAIKSGLCTKTLVVNGLITMYSKFD 396

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG-IKSNEFTLASCL 361
            +E     F+ L    L ++ ++I+   Q+G A  A + F +M L G +  +  T+AS L
Sbjct: 397 DVETVLFLFEQLQETPLISWNSVISGCVQSGRASTAFEVFHQMMLTGGLLPDAITIASLL 456

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
            GCS +  L  G+ LH   ++     + FV TAL+ MYAKCG+   AE+VFK      TA
Sbjct: 457 AGCSQLCCLNLGKELHGYTLRNNFENENFVCTALIDMYAKCGNEVQAESVFKSIKAPCTA 516

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           +WN MI GY   GL  +AL  +  M ++G  PDEITF+ VLSAC+H G ++EGK  F ++
Sbjct: 517 TWNSMISGYSLSGLQHRALSCYLEMREKGLKPDEITFLGVLSACNHGGFVDEGKICFRAM 576

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
            K +GI+PT++H+A M+ +LGRA  FTE    I +  + P++ VW  LL AC  H  +E+
Sbjct: 577 IKEFGISPTLQHYALMVGLLGRACLFTEALYLIWKMDIKPDSAVWGALLSACIIHRELEV 636

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQG 587
            E  A K+  L+ K    YV  S++ AT+  W+D   VR ++   G
Sbjct: 637 GEYVARKMFMLDYKNGGLYVLMSNLYATEAMWDDVVRVRNMMKDNG 682



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 142/513 (27%), Positives = 233/513 (45%), Gaps = 26/513 (5%)

Query: 52  FSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFL--SCSLVDMYSKCGLADNALKVF 109
           F++S  L+    S      QV           LD+F+    SL+++Y K G   +A  +F
Sbjct: 49  FTMSIFLQATTTSFNSFKLQVEQVQTHLTKSGLDRFVYVKTSLLNLYLKKGCVTSAQMLF 108

Query: 110 YRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQR 169
             + + D V W A+I    + G   +A K+F +M +    P+   L +L+    + G   
Sbjct: 109 DEMPERDTVVWNALICGYSRNGYECDAWKLFIVMLQQGFSPSATTLVNLLPFCGQCGFVS 168

Query: 170 CGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
            G S+H V  K G E D+ V NAL+S Y +   +     +F  +  + +VSWN +   + 
Sbjct: 169 QGRSVHGVAAKSGLELDSQVKNALISFYSKCAELGSAEVLFREMKDKSTVSWNTMIGAYS 228

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV 289
                ++ + +F  M  K  + +  T I +L A  S       + LH   +K  +  +  
Sbjct: 229 QSGLQEEAITVFKNMFEKNVEISPVTIINLLSAHVS------HEPLHCLVVKCGMVNDIS 282

Query: 290 VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
           V TSLV  Y + GCL  A   + S     +   T+I++ YA+ G+ ++A+  F K R   
Sbjct: 283 VVTSLVCAYSRCGCLVSAERLYASAKQDSIVGLTSIVSCYAEKGDMDIAVVYFSKTRQLC 342

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           +K +   L   L+GC   + +  G  LH  A+K+G      V   L+ MY+K    DD E
Sbjct: 343 MKIDAVALVGILHGCKKSSHIDIGMSLHGYAIKSGLCTKTLVVNGLITMYSK---FDDVE 399

Query: 410 AV-FKGSALRDTA--SWNMMIGGYVKHGLGEKALEAF-RMMLDEGYVPDEITFVVVLSAC 465
            V F    L++T   SWN +I G V+ G    A E F +MML  G +PD IT   +L+ C
Sbjct: 400 TVLFLFEQLQETPLISWNSVISGCVQSGRASTAFEVFHQMMLTGGLLPDAITIASLLAGC 459

Query: 466 SHMGLIEEGKK-HFSSIKKIYGITPTIKHFAC--MIDILGRAGKFTEIENFITETKLTPN 522
           S +  +  GK+ H  +++  +      ++F C  +ID+  + G   + E+     K  P 
Sbjct: 460 SQLCCLNLGKELHGYTLRNNF----ENENFVCTALIDMYAKCGNEVQAESVFKSIK-APC 514

Query: 523 ALVWENLLGACSWHGNIELDEKDAEKLLELEPK 555
              W +++   S  G   L  +     LE+  K
Sbjct: 515 TATWNSMISGYSLSG---LQHRALSCYLEMREK 544



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 130/261 (49%), Gaps = 5/261 (1%)

Query: 208 RVFEAIA-HQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266
           R+ + I  ++D   +++L       E     + IF  +L     PN  T  + L+A ++ 
Sbjct: 2   RITKPITLYRDLSYFHSLLKSCIHGEISSSPITIFRDLLRSSLTPNHFTMSIFLQA-TTT 60

Query: 267 SDVGFG---KQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYT 323
           S   F    +Q+  H  K  LD    V TSL+++Y K GC+  A + FD +  +D   + 
Sbjct: 61  SFNSFKLQVEQVQTHLTKSGLDRFVYVKTSLLNLYLKKGCVTSAQMLFDEMPERDTVVWN 120

Query: 324 AIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKT 383
           A+I  Y++ G    A K F  M  +G   +  TL + L  C     ++ GR +H +A K+
Sbjct: 121 ALICGYSRNGYECDAWKLFIVMLQQGFSPSATTLVNLLPFCGQCGFVSQGRSVHGVAAKS 180

Query: 384 GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF 443
           G  LD  V  AL++ Y+KC  +  AE +F+    + T SWN MIG Y + GL E+A+  F
Sbjct: 181 GLELDSQVKNALISFYSKCAELGSAEVLFREMKDKSTVSWNTMIGAYSQSGLQEEAITVF 240

Query: 444 RMMLDEGYVPDEITFVVVLSA 464
           + M ++      +T + +LSA
Sbjct: 241 KNMFEKNVEISPVTIINLLSA 261



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 94/404 (23%), Positives = 179/404 (44%), Gaps = 16/404 (3%)

Query: 139 IFNLMRESSVKPNQFVLTSLVRATTETGD--QRCGESIHAVICKYGFESDTLVGNALVSM 196
           IF  +  SS+ PN F ++  ++ATT + +  +   E +   + K G +    V  +L+++
Sbjct: 35  IFRDLLRSSLTPNHFTMSIFLQATTTSFNSFKLQVEQVQTHLTKSGLDRFVYVKTSLLNL 94

Query: 197 YMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTF 256
           Y++ G V+    +F+ +  +D+V WNAL   +          ++F  ML +GF P+  T 
Sbjct: 95  YLKKGCVTSAQMLFDEMPERDTVVWNALICGYSRNGYECDAWKLFIVMLQQGFSPSATTL 154

Query: 257 IVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLAN 316
           + +L  C     V  G+ +H    K  L+ +  V  +L+  Y K   L  A V F  + +
Sbjct: 155 VNLLPFCGQCGFVSQGRSVHGVAAKSGLELDSQVKNALISFYSKCAELGSAEVLFREMKD 214

Query: 317 KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL 376
           K   ++  +I +Y+Q+G  E A+  F+ M  + ++ +  T+ + L+         +   L
Sbjct: 215 KSTVSWNTMIGAYSQSGLQEEAITVFKNMFEKNVEISPVTIINLLSA------HVSHEPL 268

Query: 377 HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLG 436
           H + VK G + D+ V T+LV  Y++CG +  AE ++  +          ++  Y + G  
Sbjct: 269 HCLVVKCGMVNDISVVTSLVCAYSRCGCLVSAERLYASAKQDSIVGLTSIVSCYAEKGDM 328

Query: 437 EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFA 495
           + A+  F          D +  V +L  C     I+ G   H  +IK        + +  
Sbjct: 329 DIAVVYFSKTRQLCMKIDAVALVGILHGCKKSSHIDIGMSLHGYAIKSGLCTKTLVVN-- 386

Query: 496 CMIDILGRAGKFTEIEN--FITETKLTPNALVWENLLGACSWHG 537
               ++    KF ++E   F+ E       + W +++  C   G
Sbjct: 387 ---GLITMYSKFDDVETVLFLFEQLQETPLISWNSVISGCVQSG 427


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 194/613 (31%), Positives = 308/613 (50%), Gaps = 50/613 (8%)

Query: 15  NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF-ANSGYIKAGQVV 73
           ++V WN  ++ Y   G  +  + +F  M+    + S  + + ++ G+ +N+ +  A +V 
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGMR----RRSTVTYNAMISGYLSNNKFDCARKVF 114

Query: 74  HAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCC 133
             M  R   + +  LS      Y K G    A  +F ++ + DVV+W A+++   Q G  
Sbjct: 115 EKMPDRDLISWNVMLSG-----YVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFV 169

Query: 134 QEAAKIFNLMRESSVKPNQFVLTSLVRATTETG---------DQRCGESIHAVICKYG-- 182
           +EA KIF+ M    +  N+     L+ A  + G         D +    I +  C  G  
Sbjct: 170 EEARKIFDQM----LVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGY 225

Query: 183 ------------FES----DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS 226
                       F+     D +  N +++ Y +NG +S   R+FE +  +D  +W A+ S
Sbjct: 226 VRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVS 285

Query: 227 RFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDG 286
            F      D+  RIF +M  K    N  ++  ++        +   ++L           
Sbjct: 286 GFVQNGMLDEATRIFEEMPEK----NEVSWNAMIAGYVQSQQIEKARELFDQMPSR---- 337

Query: 287 NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR 346
           N     ++V  Y + G ++ A + FD +  +D  ++ A+I+ YAQ+G++E AL  F KM+
Sbjct: 338 NTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMK 397

Query: 347 LEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSID 406
            +G   N   LA  L+ C+ +A L  G+ LH   VK G         AL+AMY KCGSI+
Sbjct: 398 RDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIE 457

Query: 407 DAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
           +A  VF+    +D  SWN MI GY +HG G++AL  F  M      PD++T V VLSACS
Sbjct: 458 EAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSACS 516

Query: 467 HMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVW 526
           H GL+++G ++F+S+ + YGIT   KH+ CMID+LGRAG+  E  N +      P+A  W
Sbjct: 517 HTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATW 576

Query: 527 ENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQ 586
             LLGA   HG+ EL EK AEK+ E+EP     YV  S++ A  GRW +   +R+ +  +
Sbjct: 577 GALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDK 636

Query: 587 GIKKEPSCSWIEV 599
           G+KK P  SW+E+
Sbjct: 637 GVKKVPGYSWVEI 649



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 129/495 (26%), Positives = 220/495 (44%), Gaps = 56/495 (11%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM--------------------- 42
           A+ +F  MPE +VVSWNA+L+G+A++G  ++   +F  M                     
Sbjct: 141 ARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRI 200

Query: 43  KDMEKKF-SKFSLSTVLKGFANSGYIKAGQVVHAMAI--RLGCALDKFLSCSLVDMYSKC 99
           +D  + F SK     V       GY++  ++  A ++  R+    DK     ++  Y++ 
Sbjct: 201 EDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVR-DKISWNIMITGYAQN 259

Query: 100 GLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRE-SSVKPNQ----FV 154
           GL   A ++F  +   DV AW A+++   Q G   EA +IF  M E + V  N     +V
Sbjct: 260 GLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYV 319

Query: 155 LTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA 214
            +  +    E  DQ                 +T   N +V+ Y + G +     +F+ + 
Sbjct: 320 QSQQIEKARELFDQMPSR-------------NTSSWNTMVTGYAQCGNIDQAKILFDEMP 366

Query: 215 HQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ 274
            +D +SW A+ S +      ++ L +F +M   G   N       L +C+ ++ +  GKQ
Sbjct: 367 QRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQ 426

Query: 275 LHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGE 334
           LH   +K      ++ G +L+ MY K G +E+A   F+ +  KD+ ++  +I  YA+ G 
Sbjct: 427 LHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGF 486

Query: 335 AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVST 393
            + AL  F  M++  IK ++ TL   L+ CS    +  G    +S+    G   +    T
Sbjct: 487 GKEALALFESMKMT-IKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYT 545

Query: 394 ALVAMYAKCGSIDDAEAVFKGSAL-RDTASWNMMIGGYVKHG---LGEKALE-AFRMMLD 448
            ++ +  + G +D+A  + K      D A+W  ++G    HG   LGEKA E  F M   
Sbjct: 546 CMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEME-- 603

Query: 449 EGYVPDEITFVVVLS 463
               PD     V+LS
Sbjct: 604 ----PDNSGMYVLLS 614



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 108/459 (23%), Positives = 191/459 (41%), Gaps = 61/459 (13%)

Query: 112 IKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG 171
           I D D+V W   I+   ++G C+ A  +FN MR  S         +++          C 
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRST----VTYNAMISGYLSNNKFDCA 110

Query: 172 ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY 231
             +   +     + D +  N ++S Y++NG +S    +F  +  +D VSWNA+ S F   
Sbjct: 111 RKVFEKMP----DRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQN 166

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLH--------------- 276
              ++  +IF QML+K    N  ++  +L A      +   ++L                
Sbjct: 167 GFVEEARKIFDQMLVK----NEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLM 222

Query: 277 -AHTIKHSLDG-----------NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA 324
             +  K  LD            + +    ++  Y ++G L +A   F+ L  +D+FA+TA
Sbjct: 223 GGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTA 282

Query: 325 IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           +++ + Q G  + A + F +M     + NE +  + + G      +   R          
Sbjct: 283 MVSGFVQNGMLDEATRIFEEM----PEKNEVSWNAMIAGYVQSQQIEKAR---------- 328

Query: 385 HLLDMFVS------TALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEK 438
            L D   S        +V  YA+CG+ID A+ +F     RD  SW  MI GY + G  E+
Sbjct: 329 ELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEE 388

Query: 439 ALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMI 498
           AL  F  M  +G + +       LS+C+ +  +E GK+    + K    T  I   A ++
Sbjct: 389 ALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNA-LL 447

Query: 499 DILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
            + G+ G   E  + + E     + + W  ++   + HG
Sbjct: 448 AMYGKCGSIEEAFD-VFEDITEKDIVSWNTMIAGYARHG 485



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 161/368 (43%), Gaps = 43/368 (11%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A R+F+ MPE N VSWNA++ GY +S   +K   LF  M          S +T++ G
Sbjct: 293 LDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTS----SWNTMVTG 348

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                                              Y++CG  D A  +F  +   D ++W
Sbjct: 349 -----------------------------------YAQCGNIDQAKILFDEMPQRDCISW 373

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I+   Q G  +EA  +F  M+      N+  L   + +  E      G+ +H  + K
Sbjct: 374 AAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVK 433

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GF++  + GNAL++MY + G +     VFE I  +D VSWN + + +  +    + L +
Sbjct: 434 AGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALAL 493

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQ-LHAHTIKHSLDGNHVVGTSLVDMYD 299
           F  M +   KP+  T + +L ACS    V  G +  ++    + +  N    T ++D+  
Sbjct: 494 FESMKMT-IKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLG 552

Query: 300 KSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFTL 357
           ++G L++A     S+    D   + A++ +    G+ E+  K   K+  +E   S  + L
Sbjct: 553 RAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVL 612

Query: 358 ASCLNGCS 365
            S L   S
Sbjct: 613 LSNLYAAS 620


>gi|449439011|ref|XP_004137281.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 787

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 184/587 (31%), Positives = 300/587 (51%), Gaps = 3/587 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFS-KFSLSTVLK 59
           + LA+++F  + + ++  WNA++  Y + G     + +F SM    K +  K++   V+K
Sbjct: 133 VPLARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKCWPDKYTFPLVIK 192

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             +    +  G ++H  A+  G + + F+  SL+ MY  CG    A +VF  +    VV+
Sbjct: 193 ACSVMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVS 252

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  +I+   Q G  +EA  +FN M ++ V+P+   + S + +     +   G  +H ++ 
Sbjct: 253 WNTMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGHLKELELGIKVHKLVQ 312

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K   +    V NALV MY   G +   S VF     +D ++W ++ + +    +    L 
Sbjct: 313 KNHLQEKIEVRNALVDMYSRCGGMDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALA 372

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +   M L G  PN  T   +L AC+SL  +  GK LHA  ++  LD + +V T+L+DMY 
Sbjct: 373 LCPAMQLDGVVPNAVTLASLLSACASLCCLKQGKSLHAWVMRKKLDSDVLVVTALIDMYA 432

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K   +  +   F   + K    + A+++       A  A+  F+ M +E +++N  T  S
Sbjct: 433 KCNAVSYSFQVFAKTSMKRTVPWNALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNS 492

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK--GSAL 417
            +   + +A L     LHS  V++G +  + V T L+ MY+KCGS+D A  +F    +  
Sbjct: 493 VIPAYAILADLKQVMNLHSYLVRSGFISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKE 552

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           +D   W+++I GY  HG GE A+  F  M+  G  P+EITF  VL ACSH GL+++G   
Sbjct: 553 KDIIVWSVLIAGYGMHGHGETAVLLFNQMVHSGMQPNEITFTSVLHACSHRGLVDDGLTL 612

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F  + + Y  +P   H+ C++D+LGRAG+  E  + I       N  +W  LLGAC  H 
Sbjct: 613 FKYMIENYPSSPLPNHYTCVVDLLGRAGRLDEAYDLIKSMPFQQNHSIWGALLGACLIHQ 672

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLS 584
           N+EL E  AE+L ELEP+   NY+  ++I A  GRW D    +  LS
Sbjct: 673 NVELGEVAAERLFELEPESTGNYILLANIYAAVGRWKDAENHKLQLS 719



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 128/458 (27%), Positives = 219/458 (47%), Gaps = 9/458 (1%)

Query: 88  LSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRES- 146
           L   L   Y+ CG    A K+F  + DP +  W AII     +G   +A ++F+ M  S 
Sbjct: 119 LPSHLAVSYAFCGCVPLARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSG 178

Query: 147 SVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYG 206
              P+++    +++A +       G  IH      GF S+  V N+L++MYM  G+V   
Sbjct: 179 KCWPDKYTFPLVIKACSVMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLA 238

Query: 207 SRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266
            +VF  +  +  VSWN + S +     P++ L +F  M+    +P+  T +  L +C  L
Sbjct: 239 RQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGHL 298

Query: 267 SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
            ++  G ++H    K+ L     V  +LVDMY + G +++A + F     KD+  +T++I
Sbjct: 299 KELELGIKVHKLVQKNHLQEKIEVRNALVDMYSRCGGMDEASLVFAETKEKDVITWTSMI 358

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL 386
             Y   G A+ AL     M+L+G+  N  TLAS L+ C+ +  L  G+ LH+  ++    
Sbjct: 359 NGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSACASLCCLKQGKSLHAWVMRKKLD 418

Query: 387 LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM 446
            D+ V TAL+ MYAKC ++  +  VF  ++++ T  WN ++ G + + L  +A+  F+ M
Sbjct: 419 SDVLVVTALIDMYAKCNAVSYSFQVFAKTSMKRTVPWNALLSGLIHNELAREAVGLFKSM 478

Query: 447 LDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGK 506
           L E    +  TF  V+ A + +  +++     S + +  G    I     +ID+  + G 
Sbjct: 479 LIEEVEANHATFNSVIPAYAILADLKQVMNLHSYLVR-SGFISKIAVITGLIDMYSKCGS 537

Query: 507 FTEIENFITETKLTPNA----LVWENLLGACSWHGNIE 540
                    E    PN     +VW  L+     HG+ E
Sbjct: 538 LDYAHKIFDE---IPNKEKDIIVWSVLIAGYGMHGHGE 572


>gi|302765565|ref|XP_002966203.1| hypothetical protein SELMODRAFT_86405 [Selaginella moellendorffii]
 gi|300165623|gb|EFJ32230.1| hypothetical protein SELMODRAFT_86405 [Selaginella moellendorffii]
          Length = 916

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 189/603 (31%), Positives = 309/603 (51%), Gaps = 17/603 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKF-SKFSLSTVLK 59
           +E A  VF  +   +++ WNA +   A + +      L      +E    ++ S   +L 
Sbjct: 182 VESALEVFSRIQVPDLICWNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILS 241

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
              +   +   + +HA    LG   D  ++ +LV MY +CG  D ++ VF  +   + V+
Sbjct: 242 SCGDHSSLPLARSIHARVEELGFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVS 301

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES--IHAV 177
           W A+I    Q G    A  I+  M++   +PN+    + ++A   +  Q  GES  +H  
Sbjct: 302 WNAMIAAFAQCGHRSAAFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGW 361

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
           I   G E D +VG ALV+MY   G +      F+AI  ++ VSWNA+ + + D     + 
Sbjct: 362 IACAGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAREA 421

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGTSLVD 296
           + +F  M  +   PN  +++ +L  C    DV   + +HA  + + L      +   +V 
Sbjct: 422 MELFAAMKRQSLAPNKVSYLAVLGCCE---DVSEARSIHAEVVGNGLFAQESSIANGVVR 478

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           M+ +SG LE+A  AFD+   KD  ++   + + +   +   A+  F  M+ EG + ++FT
Sbjct: 479 MFARSGSLEEAMAAFDATVVKDSVSWNTKVAALSAREDLHGAITAFYTMQHEGFRPDKFT 538

Query: 357 LASCLNGCSPVATLANGRLLH---SIAVKTGHLLDMFVSTALVAMYAKCGS-IDDAEAVF 412
           L S ++ C+ + TL  GR +    S A++     D+ V +A++ M AKCGS +D+ E +F
Sbjct: 539 LVSVVDVCADLGTLELGRSIQQQLSAAIEVER--DVVVESAVMNMVAKCGSSVDECERLF 596

Query: 413 K--GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV-PDEITFVVVLSACSHMG 469
                  +D  +WN MI  Y +HG G KAL+ FR+M     V PD  TFV VLS CSH G
Sbjct: 597 ARMPDDRKDLVAWNTMIAAYAQHGHGRKALKLFRIMQQRSSVRPDSSTFVSVLSGCSHAG 656

Query: 470 LIEEGKKHFSSIKKIYGI-TPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWEN 528
           L+E+G   F   +++ GI    ++H+AC++D+LGR G   E E+FI +  L  +++VW +
Sbjct: 657 LVEDGIHCFFLAREVLGIEQQPVEHYACLVDVLGRMGYLREAEDFIRKMPLPADSVVWTS 716

Query: 529 LLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGI 588
           LLGACS +G++E  E+ A   +EL       YV  S+I A  GRW D   VR  ++ + +
Sbjct: 717 LLGACSSYGDLEGGERAARAFIELYRSDSVGYVVLSNIYAAAGRWEDSIRVREDMAERRV 776

Query: 589 KKE 591
           KK 
Sbjct: 777 KKR 779



 Score =  228 bits (581), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 152/553 (27%), Positives = 267/553 (48%), Gaps = 21/553 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMK---DMEKKFSKFSLSTV 57
           ++ A   F ++    + +WN L+   A       V  L+  MK     E + ++ ++  V
Sbjct: 75  LDDANAAFSALRSRGIATWNTLI---AAQSSPAAVFDLYTRMKLEERAENRPNRLTIIAV 131

Query: 58  LKGFANSGYIKA------GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYR 111
           L   A+     +       ++VH          D F++ +L+D Y KCG  ++AL+VF R
Sbjct: 132 LGAIASGDPSSSSSSRAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSR 191

Query: 112 IKDPDVVAW-GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC 170
           I+ PD++ W  AI+ C         A  +   M    + PN+    +++ +  +      
Sbjct: 192 IQVPDLICWNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPL 251

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
             SIHA + + GF  D +V  ALV+MY   G V     VFEA+A ++ VSWNA+ + F  
Sbjct: 252 ARSIHARVEELGFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVSWNAMIAAFAQ 311

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILK-ACSSLS-DVGFGKQLHAHTIKHSLDGNH 288
                    I+++M  +GF+PN  TF+  LK ACSS S D+G    LH       L+G+ 
Sbjct: 312 CGHRSAAFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLEGDV 371

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
           +VGT+LV MY  +G ++ A  AFD++  K++ ++ A++T+Y   G A  A++ F  M+ +
Sbjct: 372 MVGTALVTMYGSTGAIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAREAMELFAAMKRQ 431

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL-DMFVSTALVAMYAKCGSIDD 407
            +  N+ +  + L  C  V   +  R +H+  V  G    +  ++  +V M+A+ GS+++
Sbjct: 432 SLAPNKVSYLAVLGCCEDV---SEARSIHAEVVGNGLFAQESSIANGVVRMFARSGSLEE 488

Query: 408 AEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
           A A F  + ++D+ SWN  +           A+ AF  M  EG+ PD+ T V V+  C+ 
Sbjct: 489 AMAAFDATVVKDSVSWNTKVAALSAREDLHGAITAFYTMQHEGFRPDKFTLVSVVDVCAD 548

Query: 468 MGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAG-KFTEIENFITETKLTPNALV- 525
           +G +E G+     +     +   +   + +++++ + G    E E            LV 
Sbjct: 549 LGTLELGRSIQQQLSAAIEVERDVVVESAVMNMVAKCGSSVDECERLFARMPDDRKDLVA 608

Query: 526 WENLLGACSWHGN 538
           W  ++ A + HG+
Sbjct: 609 WNTMIAAYAQHGH 621



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/435 (27%), Positives = 201/435 (46%), Gaps = 11/435 (2%)

Query: 41  SMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCG 100
           S KD +      +L+ +L+       +  G+ +H   ++ G A +  L   LV MYSKC 
Sbjct: 14  STKDHDDYIPIETLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCR 73

Query: 101 LADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVR 160
             D+A   F  ++   +  W  +I          +      L   +  +PN+  + +++ 
Sbjct: 74  SLDDANAAFSALRSRGIATWNTLIAAQSSPAAVFDLYTRMKLEERAENRPNRLTIIAVLG 133

Query: 161 ATTETGD-------QRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAI 213
           A   +GD       +     +H  I     E D  V  AL+  Y + G V     VF  I
Sbjct: 134 AIA-SGDPSSSSSSRAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRI 192

Query: 214 AHQDSVSWN-ALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFG 272
              D + WN A+ +   + E PD+ L +  +M L+G  PN  +F+ IL +C   S +   
Sbjct: 193 QVPDLICWNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLA 252

Query: 273 KQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQA 332
           + +HA   +    G+ VV T+LV MY + G ++++   F+++A ++  ++ A+I ++AQ 
Sbjct: 253 RSIHARVEELGFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVSWNAMIAAFAQC 312

Query: 333 GEAEMALKCFRKMRLEGIKSNEFTLASCLN-GCSPVAT-LANGRLLHSIAVKTGHLLDMF 390
           G    A   + +M+ EG + N+ T  + L   CS  +  L     LH      G   D+ 
Sbjct: 313 GHRSAAFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLEGDVM 372

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
           V TALV MY   G+ID A A F     ++  SWN M+  Y  +G   +A+E F  M  + 
Sbjct: 373 VGTALVTMYGSTGAIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAREAMELFAAMKRQS 432

Query: 451 YVPDEITFVVVLSAC 465
             P++++++ VL  C
Sbjct: 433 LAPNKVSYLAVLGCC 447



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 120/424 (28%), Positives = 185/424 (43%), Gaps = 48/424 (11%)

Query: 155 LTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA 214
           L  L+R      D   G  +H  I K G   + L+GN LV MY +   +   +  F A+ 
Sbjct: 27  LAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDDANAAFSALR 86

Query: 215 HQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF---KPNMCTFIVILKACSS------ 265
            +   +WN L +      SP     ++ +M L+     +PN  T I +L A +S      
Sbjct: 87  SRGIATWNTLIA---AQSSPAAVFDLYTRMKLEERAENRPNRLTIIAVLGAIASGDPSSS 143

Query: 266 LSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
            S     + +H       L+ +  V T+L+D Y K GC+E A   F  +   DL  + A 
Sbjct: 144 SSSRAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQVPDLICWNAA 203

Query: 326 ITSYAQAGE-AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           I + A   E  + AL   R+M LEG+  N  +  + L+ C   ++L   R +H+   + G
Sbjct: 204 IMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARVEELG 263

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
            L D+ V+TALV MY +CGS+D++ AVF+  A+R+  SWN MI  + + G    A   + 
Sbjct: 264 FLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFAIYW 323

Query: 445 MMLDEGYVPDEITFVVVLSAC---SHMGLIEEGKKH--------------FSSIKKIYGI 487
            M  EG+ P++ITFV  L A    S   L E    H               +++  +YG 
Sbjct: 324 RMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLEGDVMVGTALVTMYGS 383

Query: 488 TPTIKHFACMIDIL------------------GRAGKFTEIENFITETKLTPNALVWENL 529
           T  I       D +                  GRA +  E+   +    L PN + +  +
Sbjct: 384 TGAIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNKVSYLAV 443

Query: 530 LGAC 533
           LG C
Sbjct: 444 LGCC 447



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 132/288 (45%), Gaps = 15/288 (5%)

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
           T   +L+ C   +D+  G+QLH   +K  L  N ++G  LV MY K   L+DA  AF +L
Sbjct: 26  TLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDDANAAFSAL 85

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI---KSNEFTLASCLNGCSP----- 366
            ++ +  +  +I   AQ+  A +    + +M+LE     + N  T+ + L   +      
Sbjct: 86  RSRGIATWNTLIA--AQSSPAAV-FDLYTRMKLEERAENRPNRLTIIAVLGAIASGDPSS 142

Query: 367 -VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
             ++ A  R++H     +    D+FV+TAL+  Y KCG ++ A  VF    + D   WN 
Sbjct: 143 SSSSRAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQVPDLICWNA 202

Query: 426 MIGGYVKHG-LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
            I     +    ++AL   R M  EG +P+  +FV +LS+C     +   +   + ++++
Sbjct: 203 AIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARVEEL 262

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
            G    +     ++ + GR G   E    + E     N + W  ++ A
Sbjct: 263 -GFLGDVVVATALVTMYGRCGSVDE-SIAVFEAMAVRNHVSWNAMIAA 308


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 166/483 (34%), Positives = 268/483 (55%), Gaps = 10/483 (2%)

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I  L +QG  ++A  ++ L  ES+  P Q     L+ +            +H ++   G
Sbjct: 44  LIQSLCKQGNLKQA--LYLLSHESN--PTQQTCELLILSAARRNSLSDALDVHQLLVDGG 99

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F+ D  +   L++M+ E   V    +VF+    +    WNALF         +  L ++ 
Sbjct: 100 FDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYP 159

Query: 243 QMLLKGFKPNMCTFIVILKACSS----LSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           +M + G   +  T+  +LKAC +    +S +  GK++HAH ++H    +  V T+L+DMY
Sbjct: 160 RMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMY 219

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS--NEFT 356
            + GC+  A   FD +  K++ +++A+I  YA+ G+   AL+ FR+M L    S  N  T
Sbjct: 220 ARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVT 279

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
           + S L  C+  A L  G+L+H+  ++ G    + V +AL+ MYA+CG ++  + +F    
Sbjct: 280 MVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISALITMYARCGKLESGQLIFDRMH 339

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            +D   WN +I  Y  HG G KA++ F  M+D G+ P  I+F+ VL ACSH GL+EEGKK
Sbjct: 340 KKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKK 399

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
            F S+ K +GI P+++H+ACM+D+LGRA +  E    I + ++ P   VW +LLGAC  H
Sbjct: 400 LFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGACRIH 459

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSW 596
            ++EL E+ +++L +LEP    NYV  +DI A    W++   V+ LL S+ ++K P  SW
Sbjct: 460 CHVELAERASKRLFKLEPTNAGNYVLLADIYAEAEMWDEVKRVKKLLDSRELQKVPGRSW 519

Query: 597 IEV 599
           IEV
Sbjct: 520 IEV 522



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/378 (26%), Positives = 180/378 (47%), Gaps = 11/378 (2%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           VH + +  G   D FL+  L++M+S+    DNA KVF + +   +  W A+   L   G 
Sbjct: 91  VHQLLVDGGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGR 150

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTET----GDQRCGESIHAVICKYGFESDTL 188
             +  +++  M    V  ++F  T L++A   +       + G+ IHA I ++G+ +   
Sbjct: 151 GNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVH 210

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG 248
           V   L+ MY   G VSY S VF+ +  ++ VSW+A+ + +     P + L +F +M+L  
Sbjct: 211 VMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNT 270

Query: 249 FK--PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
               PN  T + +L+AC++ + +  GK +HA+ ++  LD    V ++L+ MY + G LE 
Sbjct: 271 HDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISALITMYARCGKLES 330

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
             + FD +  KD+  + ++I+SY   G    A+K F +M   G   +  +  S L  CS 
Sbjct: 331 GQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSH 390

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTA-LVAMYAKCGSIDDAEAVFKGSALRDTAS-WN 424
              +  G+ L    VK   +       A +V +  +   +D+A  + +   +      W 
Sbjct: 391 TGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWG 450

Query: 425 MMIGGYVKH---GLGEKA 439
            ++G    H    L E+A
Sbjct: 451 SLLGACRIHCHVELAERA 468



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 158/318 (49%), Gaps = 7/318 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF    +  +  WNAL    A +G G  V+ L+  M  M     +F+ + +LK    
Sbjct: 123 ARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVA 182

Query: 64  S----GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           S     +++ G+ +HA  +R G      +  +L+DMY++ G    A  VF  +   +VV+
Sbjct: 183 SECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVS 242

Query: 120 WGAIITCLDQQGCCQEAAKIFN--LMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           W A+I C  + G   EA ++F   ++      PN   + S+++A         G+ IHA 
Sbjct: 243 WSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAY 302

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
           I + G +S   V +AL++MY   G++  G  +F+ +  +D V WN+L S +  +    + 
Sbjct: 303 ILRRGLDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKA 362

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK-HSLDGNHVVGTSLVD 296
           ++IF +M+  GF P+  +FI +L ACS    V  GK+L    +K H +  +      +VD
Sbjct: 363 IKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVD 422

Query: 297 MYDKSGCLEDAGVAFDSL 314
           +  ++  L++A    + L
Sbjct: 423 LLGRANRLDEAAKIIEDL 440



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 61/126 (48%), Gaps = 2/126 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E  + +F  M + +VV WN+L++ Y   G G+K + +F  M D     S  S  +VL  
Sbjct: 328 LESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGA 387

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            +++G ++ G ++  +M    G          +VD+  +    D A K+   ++ +P   
Sbjct: 388 CSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPK 447

Query: 119 AWGAII 124
            WG+++
Sbjct: 448 VWGSLL 453


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 173/598 (28%), Positives = 296/598 (49%), Gaps = 53/598 (8%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
            +R+F  +    V  WN L+NGYA+ G+ ++ + LF  M++                   
Sbjct: 155 GRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRE------------------- 195

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                       + IR                       ++A K+F  + D DV++W ++
Sbjct: 196 ------------LGIRR---------------------VESARKLFDELGDRDVISWNSM 222

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+     G  ++   +F  M    +  +   + S+V   + TG    G ++H    K  F
Sbjct: 223 ISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASF 282

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             +  + N L+ MY ++G ++   +VFE +  +  VSW ++ + +      D  +R+F++
Sbjct: 283 GKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHE 342

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +G  P++ T   IL AC+    +  GK +H +  ++ +  +  V  +L+DMY K G 
Sbjct: 343 MEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGS 402

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           + DA   F  +  KD+ ++  +I  Y++      AL  F +M+    K N  T+A  L  
Sbjct: 403 MGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNS-KPNSITMACILPA 461

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+ +A L  G+ +H   ++ G  LD  V+ ALV MY KCG++  A  +F     +D  SW
Sbjct: 462 CASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSW 521

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
            +MI GY  HG G +A+ AF  M + G  PDE++F+ +L ACSH GL++EG   F+ ++ 
Sbjct: 522 TVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRN 581

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
              I P  +H+AC++D+L RAG  ++   FI    + P+A +W  LL  C  + +++L E
Sbjct: 582 NCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAE 641

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           K AE + ELEP+    YV  ++I A   +W +   +R  +  +G++K P CSWIE+ G
Sbjct: 642 KVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKG 699



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 131/452 (28%), Positives = 227/452 (50%), Gaps = 18/452 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+++F  + + +V+SWN++++GY  +G  +K + LF  M  +       ++ +V+ G
Sbjct: 201 VESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAG 260

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +N+G +  G+ +H  AI+     +  L+  L+DMYSK G  ++A++VF  + +  VV+W
Sbjct: 261 CSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSW 320

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I    ++G    + ++F+ M +  + P+ F +T+++ A   TG    G+ +H  I +
Sbjct: 321 TSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKE 380

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              +SD  V NAL+ MY + G +     VF  +  +D VSWN +   +     P++ L +
Sbjct: 381 NKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNL 440

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M     KPN  T   IL AC+SL+ +  G+++H H +++    +  V  +LVDMY K
Sbjct: 441 FVEMQYNS-KPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLK 499

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L  A + FD +  KDL ++T +I  Y   G    A+  F +MR  GI+ +E +  S 
Sbjct: 500 CGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISI 559

Query: 361 LNGCSPVATLANG-------RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
           L  CS    L  G       R    I  K+ H         +V + A+ G++  A    K
Sbjct: 560 LYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHY------ACIVDLLARAGNLSKAYKFIK 613

Query: 414 GSALR-DTASWNMMIGG---YVKHGLGEKALE 441
              +  D   W  ++ G   Y    L EK  E
Sbjct: 614 MMPIEPDATIWGALLCGCRIYHDVKLAEKVAE 645



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/399 (28%), Positives = 196/399 (49%), Gaps = 56/399 (14%)

Query: 129 QQGCCQEAAKIFNLMRESSVKPNQFVLT--SLVRATTETGDQRCGESIHAVICKYGFESD 186
           + G  + A ++ N     S KP+  + T  S+++   +    + G  IH++I     E D
Sbjct: 80  ELGNLRRAMELIN----QSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVD 135

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQ------------------------------ 216
            ++G+ LV MY+  G +  G R+F+ +A++                              
Sbjct: 136 GVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRE 195

Query: 217 -------------------DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFI 257
                              D +SWN++ S +      ++GL +F QMLL G   ++ T +
Sbjct: 196 LGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMV 255

Query: 258 VILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK 317
            ++  CS+   +  G+ LH + IK S      +   L+DMY KSG L  A   F+++  +
Sbjct: 256 SVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGER 315

Query: 318 DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLH 377
            + ++T++I  YA+ G ++M+++ F +M  EGI  + FT+ + L+ C+    L NG+ +H
Sbjct: 316 SVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVH 375

Query: 378 SIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGE 437
           +   +     D+FVS AL+ MYAKCGS+ DA +VF    ++D  SWN MIGGY K+ L  
Sbjct: 376 NYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPN 435

Query: 438 KALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
           +AL  F  M      P+ IT   +L AC+ +  +E G++
Sbjct: 436 EALNLFVEM-QYNSKPNSITMACILPACASLAALERGQE 473



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 155/348 (44%), Gaps = 53/348 (15%)

Query: 238 LRIFYQMLLKGFKPNM--CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
           LR   +++ +  KP++   T+  +L+ C+ L  +  G+++H+    + ++ + V+G+ LV
Sbjct: 84  LRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLV 143

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR--------- 346
            MY   G L +    FD +AN+ +F +  ++  YA+ G    +L  F++MR         
Sbjct: 144 FMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVES 203

Query: 347 ----------------------------------------LEGIKSNEFTLASCLNGCSP 366
                                                   L GI ++  T+ S + GCS 
Sbjct: 204 ARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSN 263

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
              L  GR LH  A+K     ++ ++  L+ MY+K G+++ A  VF+    R   SW  M
Sbjct: 264 TGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSM 323

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           I GY + GL + ++  F  M  EG  PD  T   +L AC+  GL+E GK   + IK+   
Sbjct: 324 IAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKM 383

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
            +      A M D+  + G   +  +  +E ++  + + W  ++G  S
Sbjct: 384 QSDLFVSNALM-DMYAKCGSMGDAHSVFSEMQVK-DIVSWNTMIGGYS 429


>gi|242066256|ref|XP_002454417.1| hypothetical protein SORBIDRAFT_04g030430 [Sorghum bicolor]
 gi|241934248|gb|EES07393.1| hypothetical protein SORBIDRAFT_04g030430 [Sorghum bicolor]
          Length = 703

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 181/600 (30%), Positives = 307/600 (51%), Gaps = 7/600 (1%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           LA+ +F   P       NALL  +  +   +  + L   ++    +   F+ S +L+  A
Sbjct: 52  LARDLFDEFPSPTPRLANALLRAHIRARQWRAAILLGPRLR---VRLDGFTFSLLLRACA 108

Query: 63  NSGYIKAGQVVHAMAIRLGCAL-DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
               +  G+ VHA+AIR   A  D F++ ++V MY++CG    A+  +  ++ PD+V   
Sbjct: 109 ALPSLAHGRAVHAVAIRSCTASEDAFVATAIVQMYARCGDMVGAINAYGVLEKPDIVLRT 168

Query: 122 AIITCLDQQGCCQEAAKIF--NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           +++T  +Q G  +EA + F  N++ +  V      L S + A  + G  R G++ HA + 
Sbjct: 169 SVVTGYEQNGMAEEALEFFARNVVGQG-VMLTPVTLVSAMSAAAQLGHVRKGQACHAYVV 227

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           +     D  + N ++S Y++ G      R+FE +  +D ++W+ +   +  +    +GLR
Sbjct: 228 RNSLGYDLALVNTVLSFYVKIGDFQASMRLFEGMTDRDVITWSCMIKGYVQHGDAHEGLR 287

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           ++ +M+    +PN  T + +L+AC+ + D   GK++H   +    +    V T+LVDMY 
Sbjct: 288 MYREMVKARVQPNSVTLVSVLQACALVVDAEEGKRVHRVAVSIGCELEVGVATALVDMYM 347

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K  C E+A   F  +  KD+ A+ A+I    Q      +L  F+ M L+    +  T+  
Sbjct: 348 KCSCHEEAMCLFHRMPKKDVVAWAAVIGGLTQNELPGESLHVFKCMLLDDHVPDAITMVK 407

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            L  CS          LH   V+ G   + FV+ AL+ +Y+KCG ID A  VF+G+  +D
Sbjct: 408 VLAACSEFGGTRLAICLHGYLVRNGFNNNAFVAAALLDLYSKCGDIDSAVRVFEGTTEKD 467

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
              W  MI GY  HGLG++A+  ++ M+     P+ +TFV VLSACSH GL++EG + F 
Sbjct: 468 IVVWGSMIAGYGAHGLGQEAVALYQRMIASSIQPNSVTFVSVLSACSHSGLVQEGIQIFD 527

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           S+ +++G+ P  +H + M+D+LGRAG+  E   FI        A  W  LL AC  H N 
Sbjct: 528 SMTQVFGVVPNAEHQSAMVDLLGRAGELQEAIRFIRGMDGRAVAHTWCALLAACREHNNT 587

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           ++ +  A+ LL+L+P     Y   ++I A   +W      R ++  + ++K P  S +EV
Sbjct: 588 KMSKVAAKSLLKLDPDHVGYYNLLTNIYAYDEKWESVKDTRDMVRGRDLRKVPGYSSVEV 647


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 171/529 (32%), Positives = 274/529 (51%), Gaps = 33/529 (6%)

Query: 105 ALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTE 164
           A+ +F  I++P+++ W  +            A K++  M    + PN +    L+++  +
Sbjct: 18  AISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAK 77

Query: 165 TGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVS-------------------- 204
           +     G+ IH  + K G++ D  V  +L+SMY +NGR+                     
Sbjct: 78  SKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTAL 137

Query: 205 ---YGSR--------VFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
              Y SR        +F+ I+ +D VSWNA+ S + +  +  + L ++  M+    KP+ 
Sbjct: 138 ITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDE 197

Query: 254 CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
            T + ++ AC+    +  G+QLH+    H    N  +   L+D+Y K G +E A   F  
Sbjct: 198 STMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQG 257

Query: 314 LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG 373
           LA KD+ ++  +I  +      + AL  F++M   G   N+ T+ S L  C+ +  +  G
Sbjct: 258 LAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIG 317

Query: 374 RLLHSIAVK--TGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV 431
           R +H    K   G      + T+L+ MYAKCG I+ A+ VF     R  +SWN MI G+ 
Sbjct: 318 RWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFA 377

Query: 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI 491
            HG    A + F  M   G  PD+ITFV +LSACSH G+++ G+  F S+ + Y ITP +
Sbjct: 378 MHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKL 437

Query: 492 KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551
           +H+ CMID+LG  G F E +  I    + P+ ++W +LL AC  H N+EL E  A+ L++
Sbjct: 438 EHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIK 497

Query: 552 LEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           +EP+   +YV  S+I AT GRW+  + +R LL+ +GIKK P CS IE+D
Sbjct: 498 IEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEID 546



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 142/548 (25%), Positives = 246/548 (44%), Gaps = 68/548 (12%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A  +F+++ E N++ WN +  G+A + D    + L+  M  +    + +S   +LK 
Sbjct: 15  LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKS 74

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYR--------- 111
            A S  +  GQ +H   ++LG  LD +++ SL+ MY++ G  ++A KVF R         
Sbjct: 75  CAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSY 134

Query: 112 ----------------------IKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK 149
                                 I   DVV+W A+I+   +    +EA +++  M +++VK
Sbjct: 135 TALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVK 194

Query: 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRV 209
           P++  + ++V A  ++G    G  +H+ I  +GF S+  + N L+ +Y + G V     +
Sbjct: 195 PDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGL 254

Query: 210 FEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDV 269
           F+ +A +D +SWN L           + L +F +ML  G  PN  T + +L AC+ L  +
Sbjct: 255 FQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAI 314

Query: 270 GFGKQLHAHTIKH--SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIIT 327
             G+ +H +  K    +     + TSL+DMY K G +E A   FDS+  + L ++ A+I 
Sbjct: 315 DIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIF 374

Query: 328 SYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL 387
            +A  G+A  A   F KMR  GI  ++ T    L+ CS    L  GR             
Sbjct: 375 GFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGR------------- 421

Query: 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML 447
            +F S +            D +   K         +  MI      GL ++A E  R M 
Sbjct: 422 HIFRSMS-----------QDYKITPK------LEHYGCMIDLLGHCGLFKEAKEMIRTMP 464

Query: 448 DEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKF 507
            E   PD + +  +L AC     +E G+ +  ++ KI    P    +  + +I   AG++
Sbjct: 465 ME---PDGVIWCSLLKACKMHNNVELGESYAQNLIKIEPENPG--SYVLLSNIYATAGRW 519

Query: 508 TEIENFIT 515
            ++    T
Sbjct: 520 DQVAKIRT 527


>gi|15229194|ref|NP_190540.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183401|sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710
 gi|6723416|emb|CAB66909.1| putative protein [Arabidopsis thaliana]
 gi|332645058|gb|AEE78579.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 721

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 177/568 (31%), Positives = 303/568 (53%), Gaps = 41/568 (7%)

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
           G+ +HA+ ++   A   +LS   V++YSKCG    A   FY  ++P+V ++  I+    +
Sbjct: 27  GKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVKAYAK 86

Query: 130 QGCCQEAAKIFN-------------------------------LMRESSVKPNQFVLTSL 158
                 A ++F+                                MR+   + + F L+ L
Sbjct: 87  DSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTLSGL 146

Query: 159 VRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH-QD 217
           + A  +  D    + +H      GF+S + V NA V+ Y + G +     VF  +   +D
Sbjct: 147 IAACCDRVD--LIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRD 204

Query: 218 SVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHA 277
            VSWN++   +  ++   + L ++ +M+ KGFK +M T   +L A +SL  +  G+Q H 
Sbjct: 205 EVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHG 264

Query: 278 HTIKHSLDGNHVVGTSLVDMYDK-SGC--LEDAGVAFDSLANKDLFAYTAIITSYAQAGE 334
             IK     N  VG+ L+D Y K  GC  + D+   F  + + DL  +  +I+ Y+   E
Sbjct: 265 KLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEE 324

Query: 335 -AEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLD--MFV 391
            +E A+K FR+M+  G + ++ +     + CS +++ +  + +H +A+K+ H+    + V
Sbjct: 325 LSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKS-HIPSNRISV 383

Query: 392 STALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGY 451
           + AL+++Y K G++ DA  VF      +  S+N MI GY +HG G +AL  ++ MLD G 
Sbjct: 384 NNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGI 443

Query: 452 VPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIE 511
            P++ITFV VLSAC+H G ++EG+++F+++K+ + I P  +H++CMID+LGRAGK  E E
Sbjct: 444 APNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAE 503

Query: 512 NFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQG 571
            FI      P ++ W  LLGAC  H N+ L E+ A +L+ ++P   + YV  +++ A   
Sbjct: 504 RFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYADAR 563

Query: 572 RWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +W + + VR  +  + I+K+P CSWIEV
Sbjct: 564 KWEEMASVRKSMRGKRIRKKPGCSWIEV 591



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 123/467 (26%), Positives = 224/467 (47%), Gaps = 19/467 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + +A+++F  +P+ + VS+N L++GYA++ +    M LF  M+ +  +   F+LS ++  
Sbjct: 90  IHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTLSGLIAA 149

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD-PDVVA 119
             +   +   + +H  ++  G      ++ + V  YSK GL   A+ VFY + +  D V+
Sbjct: 150 CCDR--VDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVS 207

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRE---SSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
           W ++I    Q    +E AK   L +E      K + F L S++ A T       G   H 
Sbjct: 208 WNSMIVAYGQH---KEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHG 264

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVS--YGS-RVFEAIAHQDSVSWNALFSRFQ-DYE 232
            + K GF  ++ VG+ L+  Y + G     Y S +VF+ I   D V WN + S +  + E
Sbjct: 265 KLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEE 324

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VG 291
             ++ ++ F QM   G +P+ C+F+ +  ACS+LS     KQ+H   IK  +  N + V 
Sbjct: 325 LSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVN 384

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
            +L+ +Y KSG L+DA   FD +   +  ++  +I  YAQ G    AL  +++M   GI 
Sbjct: 385 NALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIA 444

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL-LDMFVSTALVAMYAKCGSIDDAEA 410
            N+ T  + L+ C+    +  G+   +   +T  +  +    + ++ +  + G +++AE 
Sbjct: 445 PNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAER 504

Query: 411 VFKGSALRD-TASWNMMIGGYVKH---GLGEKALEAFRMMLDEGYVP 453
                  +  + +W  ++G   KH    L E+A     +M      P
Sbjct: 505 FIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPLAATP 551



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 143/334 (42%), Gaps = 41/334 (12%)

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
           TF  +L    +  D+  GK LHA  +K  +  +  +    V++Y K G L  A  AF S 
Sbjct: 10  TFRDLLLKSVAERDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYST 69

Query: 315 ANKDLFAYTAI-------------------------------ITSYAQAGEAEMALKCFR 343
              ++F+Y  I                               I+ YA A E   A+  F+
Sbjct: 70  EEPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFK 129

Query: 344 KMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403
           +MR  G + + FTL+  +  C     L   + LH  +V  G      V+ A V  Y+K G
Sbjct: 130 RMRKLGFEVDGFTLSGLIAACCDRVDLI--KQLHCFSVSGGFDSYSSVNNAFVTYYSKGG 187

Query: 404 SIDDAEAVFKG-SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVL 462
            + +A +VF G   LRD  SWN MI  Y +H  G KAL  ++ M+ +G+  D  T   VL
Sbjct: 188 LLREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVL 247

Query: 463 SACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAG---KFTEIENFITETKL 519
           +A + +  +  G++    + K  G        + +ID   + G      + E    E  L
Sbjct: 248 NALTSLDHLIGGRQFHGKLIKA-GFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEI-L 305

Query: 520 TPNALVWENLLGACSWHGNIELDEKDAEKLLELE 553
           +P+ +VW  ++   S   N EL E+  +   +++
Sbjct: 306 SPDLVVWNTMISGYSM--NEELSEEAVKSFRQMQ 337


>gi|357487403|ref|XP_003613989.1| hypothetical protein MTR_5g043450 [Medicago truncatula]
 gi|355515324|gb|AES96947.1| hypothetical protein MTR_5g043450 [Medicago truncatula]
          Length = 828

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 182/598 (30%), Positives = 307/598 (51%), Gaps = 2/598 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AK+VF  M   ++V W+++++ Y E+G  ++ + +F SM     +     L +V +    
Sbjct: 156 AKKVFDEMCVRDLVLWSSIISCYVENGVYREGLEMFRSMICEGIRPDSVMLLSVAEACGK 215

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G ++  + VH   +R G   D  LS SL+ MYS+CG    A ++F  I D     W ++
Sbjct: 216 IGCLRLAKSVHGYVMREGMVGDGSLSNSLIVMYSQCGYLCRAKRLFECIDDRSTSCWTSM 275

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+  +Q  C +EA  +F  M++S V+PN   + S++ +    G  + G+S+H  + +   
Sbjct: 276 ISAYNQNECFEEALDVFIKMQDSEVEPNDVTMISVLNSCARLGRLKEGKSVHCFVLRNAM 335

Query: 184 ESDTL-VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
               L +G AL+  Y    ++S   ++  +I +++ VSWN L S +      D+ +  F 
Sbjct: 336 GVTGLDLGPALIDFYSACWKMSSCEKLLHSIGNENIVSWNTLISFYAREGLNDEAMAFFA 395

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            M+ KG  P+  +    + A +S   + FG+Q+H H +K     +  V  SL+DMY K G
Sbjct: 396 CMVAKGIMPDSFSLASSISASASSGSIQFGQQIHGHVMKRGF-FDEFVQNSLMDMYSKCG 454

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
               A   F+ + +K + A+  +I  ++Q G +  AL  F +M    ++ N+ T  S + 
Sbjct: 455 FASSAYTIFNKIKHKSIVAWNCMICGFSQNGISVEALSLFDEMFKNRLEINKVTFLSAIQ 514

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            CS +  L  G+ +H   + TG+  D+++ TALV MYAKCG +  A+ VF     +   S
Sbjct: 515 ACSNLGYLDKGKWIHHKIIVTGNQNDLYIDTALVDMYAKCGDLQTAQKVFDSIVEKSVVS 574

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           W+ MI  +  HG    A   F  M+     P+E+TF+ +LSAC H G ++EGK +F++++
Sbjct: 575 WSTMIAAHGIHGQINAATSLFHKMVLSNIKPNEVTFMNILSACRHAGSVKEGKFYFNTMR 634

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
             YGI P ++HFA ++D+L RAG        I   +    A +W  LL  C  +G +++ 
Sbjct: 635 DYYGIVPNVEHFASIVDLLSRAGDINGAYEIIKSIRTPVAASIWGALLNGCRIYGRMDMI 694

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           E  AE+L  +       Y   S+I A  G W +   VR+ +   G+KK P  S +E+D
Sbjct: 695 EYIAEELGGISTDDTGYYTLLSNIYAEGGNWYESRKVRSKMEGMGLKKVPGYSTVEID 752



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 131/543 (24%), Positives = 266/543 (48%), Gaps = 7/543 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSK---FSLSTV 57
           ++ ++ VF + P  +   ++ L+  +  +   ++V+ LF     M  K ++   F   +V
Sbjct: 49  LQSSRLVFYTHPSPDSFMFSVLIKCHLWNHLFREVLSLFNHHIQMGSKLTQNCAFLYPSV 108

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
           ++     G +  G+ +H   ++ G   D+ +  SLV MY +     +A KVF  +   D+
Sbjct: 109 IRAVTGVGELIVGRKLHGRILKSGFCEDRVIGTSLVGMYGELCFLRDAKKVFDEMCVRDL 168

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           V W +II+C  + G  +E  ++F  M    ++P+  +L S+  A  + G  R  +S+H  
Sbjct: 169 VLWSSIISCYVENGVYREGLEMFRSMICEGIRPDSVMLLSVAEACGKIGCLRLAKSVHGY 228

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
           + + G   D  + N+L+ MY + G +    R+FE I  + +  W ++ S +   E  ++ 
Sbjct: 229 VMREGMVGDGSLSNSLIVMYSQCGYLCRAKRLFECIDDRSTSCWTSMISAYNQNECFEEA 288

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV-VGTSLVD 296
           L +F +M     +PN  T I +L +C+ L  +  GK +H   +++++    + +G +L+D
Sbjct: 289 LDVFIKMQDSEVEPNDVTMISVLNSCARLGRLKEGKSVHCFVLRNAMGVTGLDLGPALID 348

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
            Y     +        S+ N+++ ++  +I+ YA+ G  + A+  F  M  +GI  + F+
Sbjct: 349 FYSACWKMSSCEKLLHSIGNENIVSWNTLISFYAREGLNDEAMAFFACMVAKGIMPDSFS 408

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
           LAS ++  +   ++  G+ +H   +K G   D FV  +L+ MY+KCG    A  +F    
Sbjct: 409 LASSISASASSGSIQFGQQIHGHVMKRG-FFDEFVQNSLMDMYSKCGFASSAYTIFNKIK 467

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            +   +WN MI G+ ++G+  +AL  F  M       +++TF+  + ACS++G +++GK 
Sbjct: 468 HKSIVAWNCMICGFSQNGISVEALSLFDEMFKNRLEINKVTFLSAIQACSNLGYLDKGKW 527

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
               I  + G    +     ++D+  + G     +  + ++ +  + + W  ++ A   H
Sbjct: 528 IHHKI-IVTGNQNDLYIDTALVDMYAKCGDLQTAQK-VFDSIVEKSVVSWSTMIAAHGIH 585

Query: 537 GNI 539
           G I
Sbjct: 586 GQI 588



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 187/386 (48%), Gaps = 4/386 (1%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           +HA  +      +   S  L++ YS+ G   ++  VFY    PD   +  +I C      
Sbjct: 20  LHAHLVVTSLHNNPLASTKLLESYSQMGSLQSSRLVFYTHPSPDSFMFSVLIKCHLWNHL 79

Query: 133 CQEAAKIFNLMRESSVKPNQ---FVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
            +E   +FN   +   K  Q   F+  S++RA T  G+   G  +H  I K GF  D ++
Sbjct: 80  FREVLSLFNHHIQMGSKLTQNCAFLYPSVIRAVTGVGELIVGRKLHGRILKSGFCEDRVI 139

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
           G +LV MY E   +    +VF+ +  +D V W+++ S + +     +GL +F  M+ +G 
Sbjct: 140 GTSLVGMYGELCFLRDAKKVFDEMCVRDLVLWSSIISCYVENGVYREGLEMFRSMICEGI 199

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
           +P+    + + +AC  +  +   K +H + ++  + G+  +  SL+ MY + G L  A  
Sbjct: 200 RPDSVMLLSVAEACGKIGCLRLAKSVHGYVMREGMVGDGSLSNSLIVMYSQCGYLCRAKR 259

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369
            F+ + ++    +T++I++Y Q    E AL  F KM+   ++ N+ T+ S LN C+ +  
Sbjct: 260 LFECIDDRSTSCWTSMISAYNQNECFEEALDVFIKMQDSEVEPNDVTMISVLNSCARLGR 319

Query: 370 LANGRLLHSIAVKTGH-LLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
           L  G+ +H   ++    +  + +  AL+  Y+ C  +   E +       +  SWN +I 
Sbjct: 320 LKEGKSVHCFVLRNAMGVTGLDLGPALIDFYSACWKMSSCEKLLHSIGNENIVSWNTLIS 379

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPD 454
            Y + GL ++A+  F  M+ +G +PD
Sbjct: 380 FYAREGLNDEAMAFFACMVAKGIMPD 405



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 170/370 (45%), Gaps = 24/370 (6%)

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS---------WNAL 224
           +HA +      ++ L    L+  Y + G +     VF      DS           WN L
Sbjct: 20  LHAHLVVTSLHNNPLASTKLLESYSQMGSLQSSRLVFYTHPSPDSFMFSVLIKCHLWNHL 79

Query: 225 FSRFQDYESPDQGLRIFYQMLLKGFK-PNMCTFIV--ILKACSSLSDVGFGKQLHAHTIK 281
           F          + L +F   +  G K    C F+   +++A + + ++  G++LH   +K
Sbjct: 80  FR---------EVLSLFNHHIQMGSKLTQNCAFLYPSVIRAVTGVGELIVGRKLHGRILK 130

Query: 282 HSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKC 341
                + V+GTSLV MY +   L DA   FD +  +DL  +++II+ Y + G     L+ 
Sbjct: 131 SGFCEDRVIGTSLVGMYGELCFLRDAKKVFDEMCVRDLVLWSSIISCYVENGVYREGLEM 190

Query: 342 FRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAK 401
           FR M  EGI+ +   L S    C  +  L   + +H   ++ G + D  +S +L+ MY++
Sbjct: 191 FRSMICEGIRPDSVMLLSVAEACGKIGCLRLAKSVHGYVMREGMVGDGSLSNSLIVMYSQ 250

Query: 402 CGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVV 461
           CG +  A+ +F+    R T+ W  MI  Y ++   E+AL+ F  M D    P+++T + V
Sbjct: 251 CGYLCRAKRLFECIDDRSTSCWTSMISAYNQNECFEEALDVFIKMQDSEVEPNDVTMISV 310

Query: 462 LSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLT 520
           L++C+ +G ++EGK  H   ++   G+T  +     +ID      K +  E  +      
Sbjct: 311 LNSCARLGRLKEGKSVHCFVLRNAMGVTG-LDLGPALIDFYSACWKMSSCEKLLHSIG-N 368

Query: 521 PNALVWENLL 530
            N + W  L+
Sbjct: 369 ENIVSWNTLI 378



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 6/226 (2%)

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
           M  ++ + + CS+L  +    QLHAH +  SL  N +  T L++ Y + G L+ + + F 
Sbjct: 1   MTLYMPLFRTCSTLRRL---TQLHAHLVVTSLHNNPLASTKLLESYSQMGSLQSSRLVFY 57

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE---FTLASCLNGCSPVAT 369
           +  + D F ++ +I  +         L  F      G K  +   F   S +   + V  
Sbjct: 58  THPSPDSFMFSVLIKCHLWNHLFREVLSLFNHHIQMGSKLTQNCAFLYPSVIRAVTGVGE 117

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           L  GR LH   +K+G   D  + T+LV MY +   + DA+ VF    +RD   W+ +I  
Sbjct: 118 LIVGRKLHGRILKSGFCEDRVIGTSLVGMYGELCFLRDAKKVFDEMCVRDLVLWSSIISC 177

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           YV++G+  + LE FR M+ EG  PD +  + V  AC  +G +   K
Sbjct: 178 YVENGVYREGLEMFRSMICEGIRPDSVMLLSVAEACGKIGCLRLAK 223



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A++VF S+ E +VVSW+ ++  +   G       LF  M     K ++ +   +L  
Sbjct: 557 LQTAQKVFDSIVEKSVVSWSTMIAAHGIHGQINAATSLFHKMVLSNIKPNEVTFMNILSA 616

Query: 61  FANSGYIKAGQV-VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             ++G +K G+   + M    G   +     S+VD+ S+ G  + A ++   I+ P   +
Sbjct: 617 CRHAGSVKEGKFYFNTMRDYYGIVPNVEHFASIVDLLSRAGDINGAYEIIKSIRTPVAAS 676

Query: 120 -WGAIIT 125
            WGA++ 
Sbjct: 677 IWGALLN 683


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 169/529 (31%), Positives = 277/529 (52%), Gaps = 1/529 (0%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           ++A  +  G     FL   LV+  S  G    A K+F +  DPDV  W AI+ C  + G 
Sbjct: 94  IYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGF 153

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
              A +++  M+ + V P+ F    +++A +       G  +H  I ++GFESD  V N 
Sbjct: 154 FGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNG 213

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           LV++Y + G +   + VF  +  +  VSW ++ S +     P + LRIF +M     +P+
Sbjct: 214 LVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPD 273

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
               + +L+A + + D+  GK +H   IK  L+    +  SL  +Y K G +  A + F+
Sbjct: 274 WIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFN 333

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
            + N  L  + A+I+ Y + G AE A++ FR M+ + I+ +  T+ S +  C+ + +L  
Sbjct: 334 QVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLEL 393

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
            R +      +    D+ V+T+L+  YAKCGS+D A  VF     +D   W+ M+ GY  
Sbjct: 394 ARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGL 453

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK 492
           HG G +++  F  M   G  P+++TFV +L+AC + GL+EEG   F  ++  YGI P  +
Sbjct: 454 HGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMRD-YGIEPRHQ 512

Query: 493 HFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLEL 552
           H+AC++D+LGRAG      NF+    + P   VW  LL AC  H ++ L E  AE+L  L
Sbjct: 513 HYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAAERLFSL 572

Query: 553 EPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           +P    +YV  S++ A+   W+  + VR L+  +G+ K    S IE++G
Sbjct: 573 DPYNTGHYVQLSNLYASSCLWDCVAKVRVLMREKGLTKHLGYSVIEING 621



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 177/361 (49%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F   P+ +V  WNA++  Y+  G     + ++  M+        FS   VLK  + 
Sbjct: 126 ARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSA 185

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ G+ VH    R G   D F+   LV +Y+KCG    A  VF R+ D  +V+W +I
Sbjct: 186 LPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSI 245

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   Q G   EA +IF+ MR+++V+P+   L S++RA T+  D   G+SIH  + K G 
Sbjct: 246 ISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGL 305

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E +  +  +L S+Y + G V      F  + +   + WNA+ S +      ++ + +F  
Sbjct: 306 ECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRL 365

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  K  +P+  T    + AC+ +  +   + +  +        + +V TSL+D Y K G 
Sbjct: 366 MKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGS 425

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++ A   FD + +KD+  ++A++  Y   G+   ++  F  MR  G+  N+ T    L  
Sbjct: 426 VDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTA 485

Query: 364 C 364
           C
Sbjct: 486 C 486



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 152/304 (50%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A  VF  + +  +VSW ++++GYA++G   + + +F  M+    +    +L +VL+ + +
Sbjct: 227 ANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTD 286

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ G+ +H   I++G   +  L  SL  +Y+KCG    A   F ++++P ++ W A+
Sbjct: 287 VEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAM 346

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+   + G  +EA ++F LM+  +++P+   +TS + A  + G       +   I    F
Sbjct: 347 ISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEF 406

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            +D +V  +L+  Y + G V     VF+ I  +D V W+A+   +  +    + + +F+ 
Sbjct: 407 RNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHA 466

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G  PN  TF+ +L AC +   V  G  L      + ++  H     +VD+  ++G 
Sbjct: 467 MRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMRDYGIEPRHQHYACVVDLLGRAGH 526

Query: 304 LEDA 307
           L+ A
Sbjct: 527 LDRA 530



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 130/296 (43%), Gaps = 9/296 (3%)

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
           Q++A  +   L     +   LV+     G +  A   FD   + D+F + AI+  Y++ G
Sbjct: 93  QIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHG 152

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST 393
               A++ + +M++  +  + F+    L  CS +  L  GR +H    + G   D+FV  
Sbjct: 153 FFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQN 212

Query: 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP 453
            LVA+YAKCG I  A AVF     R   SW  +I GY ++G   +AL  F  M      P
Sbjct: 213 GLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRP 272

Query: 454 DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENF 513
           D I  V VL A + +  +E GK     + K+ G+         +  +  + G       F
Sbjct: 273 DWIALVSVLRAYTDVEDLEHGKSIHGCVIKM-GLECEFDLLISLTSLYAKCGHVMVARLF 331

Query: 514 ITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISAT 569
             + +  P+ + W  ++     +G        AE+ +EL   M+S  + P  I+ T
Sbjct: 332 FNQVE-NPSLIFWNAMISGYVKNGY-------AEEAIELFRLMKSKNIRPDSITVT 379



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 102/225 (45%), Gaps = 1/225 (0%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           +A+  F  +   +++ WNA+++GY ++G  ++ + LF  MK    +    ++++ +   A
Sbjct: 327 VARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACA 386

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
             G ++  + +           D  ++ SL+D Y+KCG  D A  VF RI D DVV W A
Sbjct: 387 QIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSA 446

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           ++      G  +E+  +F+ MR++ V PN      L+ A   +G    G  +   +  YG
Sbjct: 447 MMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMRDYG 506

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS-WNALFS 226
            E        +V +    G +         +  +  VS W AL S
Sbjct: 507 IEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLS 551



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 64/127 (50%), Gaps = 3/127 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +++A+ VF  +P+ +VV W+A++ GY   G G++ + LF +M+      +  +   +L  
Sbjct: 426 VDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTA 485

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
             NSG ++ G  + H M         +  +C +VD+  + G  D A      +  +P V 
Sbjct: 486 CKNSGLVEEGWDLFHRMRDYGIEPRHQHYAC-VVDLLGRAGHLDRAYNFVMNMPIEPGVS 544

Query: 119 AWGAIIT 125
            WGA+++
Sbjct: 545 VWGALLS 551


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 161/387 (41%), Positives = 226/387 (58%), Gaps = 31/387 (8%)

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M+ KG KPN  T   ++KAC+S++ +  GKQ H + IK   + + VV T+LV MY + G 
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 304 LEDAGVAFD-------------------------------SLANKDLFAYTAIITSYAQA 332
           LEDAG  FD                                ++ +D+ ++TA+I  YAQ 
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120

Query: 333 GEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS 392
           G  + +L  F +MR  G+KS+ F + S L+ C+ +A L  GR  H+  V++G  LD+ V 
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVG 180

Query: 393 TALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV 452
           +ALV MYAK GS++DA  VF     R+  SWN +I G  +HG G  A+  F  ML  G  
Sbjct: 181 SALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIK 240

Query: 453 PDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIEN 512
           P+EI+FV VLSACSH GL+ EG+ +F+ + + YGI P + H+ CMID+LGRAG   E EN
Sbjct: 241 PNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAEN 300

Query: 513 FITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGR 572
           FI    + P+  VW  LLGAC  HGN EL ++ AE LL +E ++   YV  S+I A  G+
Sbjct: 301 FINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQ 360

Query: 573 WNDFSGVRALLSSQGIKKEPSCSWIEV 599
           W+D + VR L+  +G+ K+P  SWIEV
Sbjct: 361 WDDAAKVRKLMKDRGVMKQPGYSWIEV 387



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 152/325 (46%), Gaps = 33/325 (10%)

Query: 148 VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGS 207
           VKPNQF L+++V+A         G+  H  I K GFESD +V  ALV MY   G +    
Sbjct: 6   VKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAG 65

Query: 208 RVFEAIAHQ-------------------------------DSVSWNALFSRFQDYESPDQ 236
            VF+ ++ +                               D VSW A+ + +      D+
Sbjct: 66  HVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDE 125

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            L +F QM   G K +      +L AC+ L+ +  G+Q HA+ ++     + VVG++LVD
Sbjct: 126 SLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVD 185

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFT 356
           MY KSG +EDA   FD +  ++  ++ +IIT  AQ G    A+  F +M   GIK NE +
Sbjct: 186 MYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEIS 245

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKT-GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGS 415
               L+ CS    +  GR   ++  +  G + D+   T ++ +  + G +D+AE    G 
Sbjct: 246 FVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGM 305

Query: 416 ALR-DTASWNMMIGGYVKHGLGEKA 439
            +  D + W  ++G    HG  E A
Sbjct: 306 PVEPDVSVWGALLGACRIHGNTELA 330



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 163/328 (49%), Gaps = 37/328 (11%)

Query: 48  KFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNA-- 105
           K ++F+LSTV+K  A+   ++ G+  H   I++G   D  +  +LV MY++CG  ++A  
Sbjct: 7   KPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGH 66

Query: 106 -----------------------------LKVFYRIKDPDVVAWGAIITCLDQQGCCQEA 136
                                        LK+FY + + DVV+W A+I    Q G   E+
Sbjct: 67  VFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDES 126

Query: 137 AKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSM 196
             +FN MR++ +K ++F++ S++ A  +      G   HA + + GF  D +VG+ALV M
Sbjct: 127 LNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDM 186

Query: 197 YMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTF 256
           Y ++G +    +VF+ +  ++ VSWN++ +    +   +  + +F QML  G KPN  +F
Sbjct: 187 YAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISF 246

Query: 257 IVILKACSSLSDVGFGK---QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
           + +L ACS    V  G+    L         D +H   T ++D+  ++GCL++A    + 
Sbjct: 247 VGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHY--TCMIDLLGRAGCLDEAENFING 304

Query: 314 L-ANKDLFAYTAIITSYAQAGEAEMALK 340
           +    D+  + A++ +    G  E+A +
Sbjct: 305 MPVEPDVSVWGALLGACRIHGNTELAKR 332



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 130/262 (49%), Gaps = 4/262 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A ++F  M E +VVSW A++ GYA++G G + +++F  M+    K  +F + +VL  
Sbjct: 92  MKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSA 151

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+   ++ G+  HA  ++ G ALD  +  +LVDMY+K G  ++A +VF ++   + V+W
Sbjct: 152 CADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSW 211

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +IIT   Q G   +A  +F  M ++ +KPN+     ++ A + TG    G     ++ +
Sbjct: 212 NSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQ 271

Query: 181 -YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS-WNALFSRFQDYESPDQGL 238
            YG   D      ++ +    G +         +  +  VS W AL    + + + +   
Sbjct: 272 NYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNTELAK 331

Query: 239 RIFYQMLLKGFKPNMCTFIVIL 260
           RI   +L  G +  +    V+L
Sbjct: 332 RIAEHLL--GMEVQIAGIYVLL 351


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 161/454 (35%), Positives = 254/454 (55%), Gaps = 1/454 (0%)

Query: 146 SSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSY 205
           + + P      SL+++       + G+ +HA +C  GF  DT++   LV++Y     +S 
Sbjct: 69  TCLTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSS 128

Query: 206 GSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSS 265
              +F+ I   +   WN L   +      +  ++++YQM   G  P+  TF  +LKAC++
Sbjct: 129 ARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAA 188

Query: 266 LSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
           LS +  G+++H H ++   + +  VG +L+DMY K GC+  A   FD +  +D   + ++
Sbjct: 189 LSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSM 248

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH 385
           + +Y+Q G  +  L    +M L G++  E TL + ++  +  A L  GR LH ++ +   
Sbjct: 249 LAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEF 308

Query: 386 LLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRM 445
                V TALV MYAKCGS+  A  +F+   ++   SWN MI GY  HG   +AL+ F  
Sbjct: 309 ESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEE 368

Query: 446 MLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAG 505
           M +    PD ITFV VLSACSH GL+EEG   F ++ + Y I PT++H+ CM+D+LG +G
Sbjct: 369 M-NRVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSG 427

Query: 506 KFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSD 565
           +  E  N I + K+ P++ VW  LL +C  H N+EL E   E+L+ELEP    NYV  S+
Sbjct: 428 RLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSN 487

Query: 566 ISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           I A  G+W   + +R L++ + +KK  +CSWIEV
Sbjct: 488 IYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEV 521



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 111/403 (27%), Positives = 187/403 (46%), Gaps = 13/403 (3%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           IK G+ +HA     G   D  ++  LV++Y  C    +A  +F RI   ++  W  +I  
Sbjct: 91  IKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRG 150

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
               G  + A +++  M +  + P+ F    +++A         G  IH  + + G+E D
Sbjct: 151 YAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKD 210

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             VG AL+ MY + G V     VF+ I  +D+V WN++ + +     PD  L +  +M+L
Sbjct: 211 VFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVL 270

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
            G +P   T +  + A +  + +  G++LH  + +   + +  V T+LVDMY K G +  
Sbjct: 271 TGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRV 330

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A   F+ L  K + ++ A+IT YA  G A  AL  F +M     K +  T    L+ CS 
Sbjct: 331 ARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMN-RVAKPDHITFVGVLSACSH 389

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVS--TALVAMYAKCGSIDDA-EAVFKGSALRDTASW 423
              L  G +     ++  + +D  V   T +V +    G +D+A   + +   L D+  W
Sbjct: 390 GGLLEEGWMFFETMIR-DYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVW 448

Query: 424 NMMIGGYVKHG---LGEKALEAFRMMLDEGYVPDEITFVVVLS 463
             ++     H    LGE ALE  R++  E   PD+    V+LS
Sbjct: 449 GALLNSCKIHANVELGEIALE--RLIELE---PDDAGNYVILS 486



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 148/305 (48%), Gaps = 2/305 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F  +P+ N+  WN L+ GYA +G  +  + L+  M D       F+   VLK  A 
Sbjct: 129 ARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAA 188

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              I+ G+ +H   ++ G   D F+  +L+DMY+KCG   +A +VF +I   D V W ++
Sbjct: 189 LSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSM 248

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    Q G       + + M  + ++P +  L + + A+ +      G  +H +  +  F
Sbjct: 249 LAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEF 308

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           ES   V  ALV MY + G V     +FE +  +  VSWNA+ + +  +    + L +F +
Sbjct: 309 ESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEE 368

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK-HSLDGNHVVGTSLVDMYDKSG 302
           M  +  KP+  TF+ +L ACS    +  G       I+ + +D      T +VD+   SG
Sbjct: 369 M-NRVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSG 427

Query: 303 CLEDA 307
            L++A
Sbjct: 428 RLDEA 432



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 7/129 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + +A+ +F+ +    VVSWNA++ GYA  G   + + LF  M  + K     +   VL  
Sbjct: 328 VRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMNRVAKP-DHITFVGVLSA 386

Query: 61  FANSGYIKAGQVVHAMAIRLGCALD---KFLSCSLVDMYSKCGLADNALKVFYRIKD-PD 116
            ++ G ++ G +     IR    +D   +  +C +VD+    G  D A  +  ++K  PD
Sbjct: 387 CSHGGLLEEGWMFFETMIR-DYKIDPTVQHYTC-MVDLLGHSGRLDEAYNLIMQMKVLPD 444

Query: 117 VVAWGAIIT 125
              WGA++ 
Sbjct: 445 SGVWGALLN 453


>gi|297794367|ref|XP_002865068.1| hypothetical protein ARALYDRAFT_920083 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297310903|gb|EFH41327.1| hypothetical protein ARALYDRAFT_920083 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 659

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 176/597 (29%), Positives = 302/597 (50%), Gaps = 27/597 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMK-DMEKKFSKFSLSTVLKGFA 62
           A+ +F  MP  ++VSW A++NGY  + +  + ++LF ++  D         LS  LK   
Sbjct: 39  ARHLFDQMPHRDIVSWTAIINGYVTAANSFEALNLFSALLFDPAVSPDTSVLSVALKACG 98

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
            S  I  G+ +HA A +       F+  +L++MY + G  D   ++F  ++  + V W A
Sbjct: 99  QSSNIGYGESLHAYAFKTSLLTSVFVGTNLLNMYMRTGKIDKGCRIFTEMQFRNTVTWTA 158

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I++ + + G  +E    F+ M  S    + F   + ++A       + G+ IH  +   G
Sbjct: 159 IVSGMVEAGRHKEGLTYFSEMSRSKGLSDDFAFATALKACARLRQVKYGKEIHTHVIVRG 218

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            ++   V N+L++MY E G +  G  +FE+++ +D  SW  L   +      ++ +  F 
Sbjct: 219 SDASLCVVNSLINMYTECGEMHDGVHLFESMSERDVFSWTTLIDAYSQMGQEEKAVATFL 278

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +             I I +  S  +    G  L              V  S++ MY   G
Sbjct: 279 K-------------IEIFRRTSQWTYFCLGDSLS-------------VSNSMMKMYSTCG 312

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            L+ A V F  +  +D+  ++ II  Y+QAG  E    CF  MR  G K  +  LAS L+
Sbjct: 313 KLDSASVLFQGMRRRDIITWSTIIGGYSQAGLGEEVFMCFSWMRQAGPKPTDPALASLLS 372

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
               +A L  GR +H++A+  G   +  + +AL+ MY+KCGSI++A  +F+ +   D  S
Sbjct: 373 VSGTMAVLEQGRQVHALALYLGLEQNSTIRSALINMYSKCGSIEEASKIFEETDTDDIVS 432

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
              MI GY +HG  ++A++ F   L  G  PD +TF+ VL+ACSH G ++ G ++F+ ++
Sbjct: 433 LTAMINGYAEHGNTKEAIDLFEKSLKVGLRPDTVTFISVLTACSHSGQLDLGFRYFNLMQ 492

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
             Y I P  +H+ CM+D+L RAG+ ++ E  I E     + +VW  LL AC   G+ E  
Sbjct: 493 DEYNIRPVKEHYGCMVDLLCRAGRLSDAEKMINEMPWKKDDVVWTTLLNACKAKGDTERG 552

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            + AE++LEL+P  E+ +V  ++I ++ G+  + + VR  + S+G+ K P  S I++
Sbjct: 553 RRAAERILELDPTSETAFVTLANIYSSTGKLEEAAHVRKAMKSKGVIKVPGWSSIKI 609



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 120/247 (48%), Gaps = 2/247 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  +F+ M   ++++W+ ++ GY+++G G++V   F  M+    K +  +L+++L  
Sbjct: 314 LDSASVLFQGMRRRDIITWSTIIGGYSQAGLGEEVFMCFSWMRQAGPKPTDPALASLLSV 373

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 ++ G+ VHA+A+ LG   +  +  +L++MYSKCG  + A K+F      D+V+ 
Sbjct: 374 SGTMAVLEQGRQVHALALYLGLEQNSTIRSALINMYSKCGSIEEASKIFEETDTDDIVSL 433

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG-ESIHAVIC 179
            A+I    + G  +EA  +F    +  ++P+     S++ A + +G    G    + +  
Sbjct: 434 TAMINGYAEHGNTKEAIDLFEKSLKVGLRPDTVTFISVLTACSHSGQLDLGFRYFNLMQD 493

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALFSRFQDYESPDQGL 238
           +Y           +V +    GR+S   ++   +   +D V W  L +  +     ++G 
Sbjct: 494 EYNIRPVKEHYGCMVDLLCRAGRLSDAEKMINEMPWKKDDVVWTTLLNACKAKGDTERGR 553

Query: 239 RIFYQML 245
           R   ++L
Sbjct: 554 RAAERIL 560


>gi|297794157|ref|XP_002864963.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310798|gb|EFH41222.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 720

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 168/510 (32%), Positives = 277/510 (54%), Gaps = 3/510 (0%)

Query: 92  LVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPN 151
           LVD   KCG    A ++F  + +  +V W +II    +    +EA +++ LM  ++V P+
Sbjct: 87  LVDASLKCGEIGYARQLFDGMPERHIVTWNSIIAYYIKHRRSKEAVEMYRLMISNNVLPD 146

Query: 152 QFVLTSLVRATTETGDQRCGESIHAVICKYGFE-SDTLVGNALVSMYMENGRVSYGSRVF 210
           ++ L+S+ +A ++   ++  +  H +    G E S+  VG+ALV MY++ G+      V 
Sbjct: 147 EYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVL 206

Query: 211 EAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVG 270
           + +  +D V   AL   +       + ++ F  ML++  +PN  T+  +L +C +L D+G
Sbjct: 207 DRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIG 266

Query: 271 FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
            GK +H   +K   +      TSL+ MY +   ++D+ + F  +   +   +T++I+   
Sbjct: 267 NGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLLVFKCIKYPNQVTWTSLISGLV 326

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMF 390
           Q G  E AL  FRKM  + +K N FTL+S L GCS +A    GR +H I  K G   D +
Sbjct: 327 QNGREETALIEFRKMMRDSVKPNSFTLSSALRGCSNLAMFEEGRQVHGIVSKYGFDRDKY 386

Query: 391 VSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG 450
             + L+ +Y KCG  D A  VF   +  D  S N MI  Y ++G G +ALE F  M++ G
Sbjct: 387 AGSGLIELYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALELFERMINLG 446

Query: 451 YVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEI 510
             P+++T + VL AC++ GL+EEG + F S +K   I  T  H+ACM+D+LGRAG+  E 
Sbjct: 447 LQPNDVTVLSVLLACNNSGLVEEGCELFDSFRK-DKIMLTNDHYACMVDMLGRAGRLEEA 505

Query: 511 ENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQ 570
           E  ITE    P+ ++W  LL AC  H  +E+ E+   K+LE+ P  E   +  S++ A+ 
Sbjct: 506 EMLITEVT-NPDLVLWRTLLSACKVHRKVEMAERITRKILEIAPGDEGTLILLSNLYAST 564

Query: 571 GRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           G+W     +++ +    +KK P+ SW+E+D
Sbjct: 565 GKWKRVIEMKSKMKEMKLKKNPAMSWVEID 594



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 127/446 (28%), Positives = 216/446 (48%), Gaps = 1/446 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F  MPE ++V+WN+++  Y +    ++ + ++  M        +++LS+V K F++
Sbjct: 100 ARQLFDGMPERHIVTWNSIIAYYIKHRRSKEAVEMYRLMISNNVLPDEYTLSSVFKAFSD 159

Query: 64  SGYIKAGQVVHAMAIRLGCALDK-FLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
               K  Q  H +A+ LG  +   F+  +LVDMY K G    A  V  R+++ DVV   A
Sbjct: 160 LSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITA 219

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I    Q+G   EA K F  M    V+PN++   S++ +     D   G+ IH ++ K G
Sbjct: 220 LIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSG 279

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           FES      +L++MY+    V     VF+ I + + V+W +L S        +  L  F 
Sbjct: 280 FESALASQTSLLTMYLRCSLVDDSLLVFKCIKYPNQVTWTSLISGLVQNGREETALIEFR 339

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M+    KPN  T    L+ CS+L+    G+Q+H    K+  D +   G+ L+++Y K G
Sbjct: 340 KMMRDSVKPNSFTLSSALRGCSNLAMFEEGRQVHGIVSKYGFDRDKYAGSGLIELYGKCG 399

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
           C + A + FD+L+  D+ +   +I SYAQ G    AL+ F +M   G++ N+ T+ S L 
Sbjct: 400 CSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALELFERMINLGLQPNDVTVLSVLL 459

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+    +  G  L     K   +L       +V M  + G +++AE +       D   
Sbjct: 460 ACNNSGLVEEGCELFDSFRKDKIMLTNDHYACMVDMLGRAGRLEEAEMLITEVTNPDLVL 519

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLD 448
           W  ++     H   E A    R +L+
Sbjct: 520 WRTLLSACKVHRKVEMAERITRKILE 545



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 107/222 (48%), Gaps = 2/222 (0%)

Query: 255 TFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL 314
           TF  +L+ C     +   K + A  +K       + G+ LVD   K G +  A   FD +
Sbjct: 49  TFSQLLRQCIDERSISGIKNIQAQMLKSGFPV-ELSGSKLVDASLKCGEIGYARQLFDGM 107

Query: 315 ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
             + +  + +II  Y +   ++ A++ +R M    +  +E+TL+S     S ++     +
Sbjct: 108 PERHIVTWNSIIAYYIKHRRSKEAVEMYRLMISNNVLPDEYTLSSVFKAFSDLSLEKEAQ 167

Query: 375 LLHSIAVKTG-HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKH 433
             H +AV  G  + ++FV +ALV MY K G   +A+ V      +D      +I GY + 
Sbjct: 168 RSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQK 227

Query: 434 GLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGK 475
           G   +A++AF+ ML E   P+E T+  VL +C ++  I  GK
Sbjct: 228 GEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGNGK 269



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 66/124 (53%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           ++A+ VF ++ E++V+S N ++  YA++G G++ + LF  M ++  + +  ++ +VL   
Sbjct: 402 DMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALELFERMINLGLQPNDVTVLSVLLAC 461

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
            NSG ++ G  +     +    L       +VDM  + G  + A  +   + +PD+V W 
Sbjct: 462 NNSGLVEEGCELFDSFRKDKIMLTNDHYACMVDMLGRAGRLEEAEMLITEVTNPDLVLWR 521

Query: 122 AIIT 125
            +++
Sbjct: 522 TLLS 525


>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
 gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 185/600 (30%), Positives = 306/600 (51%), Gaps = 8/600 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM---KDMEKKFSKFSLSTVLKG 60
           A+++F  + +   + +N ++  Y   GD  + M +F  M   KD       ++   V+K 
Sbjct: 74  ARKLFDELRQRGTLLYNFMIKMYIAKGDYFEAMKVFLEMLGSKDCCP--DNYTYPFVIKA 131

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +    ++ G+V+H + +        F+  SL+ MY  CG  + A KVF  +K+  VV+W
Sbjct: 132 CSELLLVEYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARKVFDAMKEKSVVSW 191

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I    + G    A  +FN M +S V+ +   + S++ A     +   G  +H ++ +
Sbjct: 192 NTMINGYFKNGFANTALVVFNQMVDSGVEIDGASVVSVLPACGYLKELEVGRRVHGLV-E 250

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
                  +V NALV MY + G +     VF+ +  +D VSW ++ + +         L +
Sbjct: 251 EKVLGKKIVSNALVDMYAKCGSMDEARLVFDNMVERDVVSWTSMINGYILNGDAKSALSL 310

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  M ++G +PN  T  +IL AC+SL+++  G+ LH   +K  L     V TSL+DMY K
Sbjct: 311 FKIMQIEGLRPNSVTIALILLACASLNNLKDGRCLHGWVMKQRLYSEVAVETSLIDMYAK 370

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
             CL  +   F   + K    + A+++       A  A+  F+KM +EG++ N  T  S 
Sbjct: 371 CNCLGLSFSVFTRTSRKKTVPWNALLSGCVHNKLATEAIGLFKKMLMEGVEINAATCNSL 430

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL--R 418
           L     +A L     ++S  +++G + ++ V+T+L+ +Y+KCGS++ A  +F    +  +
Sbjct: 431 LPAYGILADLQPVNNINSYLMRSGFVSNIQVATSLIDIYSKCGSLESAHKIFNTIPVDVQ 490

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHF 478
           D   W+++I GY  HG GE A+  F+ M+  G  P+++TF  VL +CSH G++++G   F
Sbjct: 491 DIFVWSIIIAGYGMHGHGETAVSLFKQMVQSGVKPNDVTFTSVLQSCSHAGMVDDGLYLF 550

Query: 479 SSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
             + K +   P   H+ CM+D+LGRAG+  E  + I      P   VW  LLGAC  H N
Sbjct: 551 KFMLKDHQTIPNDDHYTCMVDLLGRAGRMDEAYDLIKTMPFMPGHAVWGALLGACVMHEN 610

Query: 539 IELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           +EL E  A  L ELEP    NYV  + + A  GRW D   VR  +   G++K P+ S IE
Sbjct: 611 VELGEVAARWLFELEPGNTGNYVLLAKLYAALGRWEDAENVRQRMDDIGLRKAPAHSLIE 670



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 133/516 (25%), Positives = 250/516 (48%), Gaps = 12/516 (2%)

Query: 56  TVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP 115
           ++LK +  +  + + + +HA  I  G  L   +   LV  Y+ CG   NA K+F  ++  
Sbjct: 26  SLLKHYGAAQSLTSTKQLHAHLITSGL-LSIDIRSVLVATYAHCGYVHNARKLFDELRQR 84

Query: 116 DVVAWGAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
             + +  +I     +G   EA K+F  ++      P+ +    +++A +E      G  +
Sbjct: 85  GTLLYNFMIKMYIAKGDYFEAMKVFLEMLGSKDCCPDNYTYPFVIKACSELLLVEYGRVL 144

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H +     F S   V N+L++MYM  G V    +VF+A+  +  VSWN + + +      
Sbjct: 145 HGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARKVFDAMKEKSVVSWNTMINGYFKNGFA 204

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
           +  L +F QM+  G + +  + + +L AC  L ++  G+++H   ++  + G  +V  +L
Sbjct: 205 NTALVVFNQMVDSGVEIDGASVVSVLPACGYLKELEVGRRVHG-LVEEKVLGKKIVSNAL 263

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           VDMY K G +++A + FD++  +D+ ++T++I  Y   G+A+ AL  F+ M++EG++ N 
Sbjct: 264 VDMYAKCGSMDEARLVFDNMVERDVVSWTSMINGYILNGDAKSALSLFKIMQIEGLRPNS 323

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            T+A  L  C+ +  L +GR LH   +K     ++ V T+L+ MYAKC  +  + +VF  
Sbjct: 324 VTIALILLACASLNNLKDGRCLHGWVMKQRLYSEVAVETSLIDMYAKCNCLGLSFSVFTR 383

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
           ++ + T  WN ++ G V + L  +A+  F+ ML EG   +  T   +L A   +  ++  
Sbjct: 384 TSRKKTVPWNALLSGCVHNKLATEAIGLFKKMLMEGVEINAATCNSLLPAYGILADLQPV 443

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKL-TPNALVWENLLGAC 533
               S + +  G    I+    +IDI  + G             +   +  VW  ++   
Sbjct: 444 NNINSYLMR-SGFVSNIQVATSLIDIYSKCGSLESAHKIFNTIPVDVQDIFVWSIIIAGY 502

Query: 534 SWHGNIELDEKDAEKLLELEPKMESNYVFPSDISAT 569
             HG+        E  + L  +M  + V P+D++ T
Sbjct: 503 GMHGH-------GETAVSLFKQMVQSGVKPNDVTFT 531



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 126/448 (28%), Positives = 219/448 (48%), Gaps = 12/448 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A++VF +M E +VVSWN ++NGY ++G     + +F  M D   +    S+ +VL  
Sbjct: 173 VEEARKVFDAMKEKSVVSWNTMINGYFKNGFANTALVVFNQMVDSGVEIDGASVVSVLPA 232

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 ++ G+ VH + +       K +S +LVDMY+KCG  D A  VF  + + DVV+W
Sbjct: 233 CGYLKELEVGRRVHGL-VEEKVLGKKIVSNALVDMYAKCGSMDEARLVFDNMVERDVVSW 291

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I      G  + A  +F +M+   ++PN   +  ++ A     + + G  +H  + K
Sbjct: 292 TSMINGYILNGDAKSALSLFKIMQIEGLRPNSVTIALILLACASLNNLKDGRCLHGWVMK 351

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
               S+  V  +L+ MY +   +     VF   + + +V WNAL S     +   + + +
Sbjct: 352 QRLYSEVAVETSLIDMYAKCNCLGLSFSVFTRTSRKKTVPWNALLSGCVHNKLATEAIGL 411

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +ML++G + N  T   +L A   L+D+     ++++ ++     N  V TSL+D+Y K
Sbjct: 412 FKKMLMEGVEINAATCNSLLPAYGILADLQPVNNINSYLMRSGFVSNIQVATSLIDIYSK 471

Query: 301 SGCLEDAGVAFDSLA--NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            G LE A   F+++    +D+F ++ II  Y   G  E A+  F++M   G+K N+ T  
Sbjct: 472 CGSLESAHKIFNTIPVDVQDIFVWSIIIAGYGMHGHGETAVSLFKQMVQSGVKPNDVTFT 531

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGHLL---DMFVSTALVAMYAKCGSIDDAEAVFKGS 415
           S L  CS    + +G  L    +K    +   D +  T +V +  + G +D+A  + K  
Sbjct: 532 SVLQSCSHAGMVDDGLYLFKFMLKDHQTIPNDDHY--TCMVDLLGRAGRMDEAYDLIKTM 589

Query: 416 A-LRDTASWNMMIGGYVKH---GLGEKA 439
             +   A W  ++G  V H    LGE A
Sbjct: 590 PFMPGHAVWGALLGACVMHENVELGEVA 617



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 142/321 (44%), Gaps = 18/321 (5%)

Query: 251 PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVA 310
           P    +  +LK   +   +   KQLHAH I   L     + + LV  Y   G + +A   
Sbjct: 19  PKTTQYQSLLKHYGAAQSLTSTKQLHAHLITSGLLSID-IRSVLVATYAHCGYVHNARKL 77

Query: 311 FDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK---SNEFTLASCLNGCSPV 367
           FD L  +    Y  +I  Y   G+   A+K F +M   G K    + +T    +  CS +
Sbjct: 78  FDELRQRGTLLYNFMIKMYIAKGDYFEAMKVFLEML--GSKDCCPDNYTYPFVIKACSEL 135

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
             +  GR+LH + + +     +FV  +L+AMY  CG +++A  VF     +   SWN MI
Sbjct: 136 LLVEYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARKVFDAMKEKSVVSWNTMI 195

Query: 428 GGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYG 486
            GY K+G    AL  F  M+D G   D  + V VL AC ++  +E G++ H    +K+ G
Sbjct: 196 NGYFKNGFANTALVVFNQMVDSGVEIDGASVVSVLPACGYLKELEVGRRVHGLVEEKVLG 255

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDA 546
                     ++D+  + G   E    + +  +  + + W +++     +G       DA
Sbjct: 256 KKIVSN---ALVDMYAKCGSMDE-ARLVFDNMVERDVVSWTSMINGYILNG-------DA 304

Query: 547 EKLLELEPKMESNYVFPSDIS 567
           +  L L   M+   + P+ ++
Sbjct: 305 KSALSLFKIMQIEGLRPNSVT 325


>gi|356495419|ref|XP_003516575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Glycine max]
          Length = 666

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 181/599 (30%), Positives = 307/599 (51%), Gaps = 3/599 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFS-KFSLSTVLKGFA 62
           A  +F  + +  + SWNA++  Y + G     ++LF  M    +    KF+   V+K   
Sbjct: 65  ASHLFDKLSQPCLFSWNAMMRMYVQIGRPFDALNLFVEMLGSGRTLPDKFTYPVVIKACG 124

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           +   I  G  +H    + G   D F+  +L+ MY   G  + A  VF  +++  V++W  
Sbjct: 125 DLSLIDVGVGIHGQTFKFGYDSDTFVQNTLLAMYMNAGEKEAAQLVFDPMQERTVISWNT 184

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I    +  C ++A  ++  M +  V+P+   + S++ A     +   G  +H ++ + G
Sbjct: 185 MINGYFRNNCAEDAVNVYGRMMDVGVEPDCATVVSVLPACGLLKNVELGREVHTLVQEKG 244

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F  + +V NALV MY++ G++     + + +  +D V+W  L + +         L +  
Sbjct: 245 FWGNIVVRNALVDMYVKCGQMKEAWLLAKGMDDKDVVTWTTLINGYILNGDARSALMLCG 304

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            M  +G KPN  +   +L AC SL  +  GK LHA  I+  ++   +V T+L++MY K  
Sbjct: 305 MMQCEGVKPNSVSIASLLSACGSLVYLNHGKCLHAWAIRQKIESEVIVETALINMYAKCN 364

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
           C   +   F   + K    + A+++ + Q   A  A++ F++M ++ ++ +  T  S L 
Sbjct: 365 CGNLSYKVFMGTSKKRTAPWNALLSGFIQNRLAREAIELFKQMLVKDVQPDHATFNSLLP 424

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL--RDT 420
             + +A L     +H   +++G L  + V++ LV +Y+KCGS+  A  +F   +L  +D 
Sbjct: 425 AYAILADLQQAMNIHCYLIRSGFLYRLEVASILVDIYSKCGSLGYAHQIFNIISLKDKDI 484

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
             W+ +I  Y KHG G+ A++ F  M+  G  P+ +TF  VL ACSH GL+ EG   F+ 
Sbjct: 485 IIWSAIIAAYGKHGHGKMAVKLFNQMVQSGVKPNHVTFTSVLHACSHAGLVNEGFSLFNF 544

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           + K + I   + H+ CMID+LGRAG+  +  N I    +TPN  VW  LLGAC  H N+E
Sbjct: 545 MLKQHQIISHVDHYTCMIDLLGRAGRLNDAYNLIRTMPITPNHAVWGALLGACVIHENVE 604

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           L E  A    +LEP+   NYV  + + A  GRW D   VR +++  G++K P+ S IEV
Sbjct: 605 LGEVAARWTFKLEPENTGNYVLLAKLYAAVGRWGDAERVRDMVNEVGLRKLPAHSLIEV 663



 Score =  208 bits (529), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 119/410 (29%), Positives = 213/410 (51%), Gaps = 1/410 (0%)

Query: 56  TVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP 115
           ++L  F+ S      + +HA+ + LG      L   L   Y++C  A  A  +F ++  P
Sbjct: 16  SLLGKFSASQSHSETKRLHALILTLGIFSSSNLCSKLATTYAQCHHASYASHLFDKLSQP 75

Query: 116 DVVAWGAIITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
            + +W A++    Q G   +A  +F  ++      P++F    +++A  +      G  I
Sbjct: 76  CLFSWNAMMRMYVQIGRPFDALNLFVEMLGSGRTLPDKFTYPVVIKACGDLSLIDVGVGI 135

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H    K+G++SDT V N L++MYM  G       VF+ +  +  +SWN + + +      
Sbjct: 136 HGQTFKFGYDSDTFVQNTLLAMYMNAGEKEAAQLVFDPMQERTVISWNTMINGYFRNNCA 195

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
           +  + ++ +M+  G +P+  T + +L AC  L +V  G+++H    +    GN VV  +L
Sbjct: 196 EDAVNVYGRMMDVGVEPDCATVVSVLPACGLLKNVELGREVHTLVQEKGFWGNIVVRNAL 255

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           VDMY K G +++A +    + +KD+  +T +I  Y   G+A  AL     M+ EG+K N 
Sbjct: 256 VDMYVKCGQMKEAWLLAKGMDDKDVVTWTTLINGYILNGDARSALMLCGMMQCEGVKPNS 315

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            ++AS L+ C  +  L +G+ LH+ A++     ++ V TAL+ MYAKC   + +  VF G
Sbjct: 316 VSIASLLSACGSLVYLNHGKCLHAWAIRQKIESEVIVETALINMYAKCNCGNLSYKVFMG 375

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
           ++ + TA WN ++ G++++ L  +A+E F+ ML +   PD  TF  +L A
Sbjct: 376 TSKKRTAPWNALLSGFIQNRLAREAIELFKQMLVKDVQPDHATFNSLLPA 425



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 217/447 (48%), Gaps = 11/447 (2%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E A+ VF  M E  V+SWN ++NGY  +   +  ++++  M D+  +    ++ +VL   
Sbjct: 165 EAAQLVFDPMQERTVISWNTMINGYFRNNCAEDAVNVYGRMMDVGVEPDCATVVSVLPAC 224

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
                ++ G+ VH +    G   +  +  +LVDMY KCG    A  +   + D DVV W 
Sbjct: 225 GLLKNVELGREVHTLVQEKGFWGNIVVRNALVDMYVKCGQMKEAWLLAKGMDDKDVVTWT 284

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            +I      G  + A  +  +M+   VKPN   + SL+ A         G+ +HA   + 
Sbjct: 285 TLINGYILNGDARSALMLCGMMQCEGVKPNSVSIASLLSACGSLVYLNHGKCLHAWAIRQ 344

Query: 182 GFESDTLVGNALVSMYME--NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
             ES+ +V  AL++MY +   G +SY  +VF   + + +  WNAL S F       + + 
Sbjct: 345 KIESEVIVETALINMYAKCNCGNLSY--KVFMGTSKKRTAPWNALLSGFIQNRLAREAIE 402

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F QML+K  +P+  TF  +L A + L+D+     +H + I+        V + LVD+Y 
Sbjct: 403 LFKQMLVKDVQPDHATFNSLLPAYAILADLQQAMNIHCYLIRSGFLYRLEVASILVDIYS 462

Query: 300 KSGCLEDAGVAFD--SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           K G L  A   F+  SL +KD+  ++AII +Y + G  +MA+K F +M   G+K N  T 
Sbjct: 463 KCGSLGYAHQIFNIISLKDKDIIIWSAIIAAYGKHGHGKMAVKLFNQMVQSGVKPNHVTF 522

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS-TALVAMYAKCGSIDDAEAVFKGSA 416
            S L+ CS    +  G  L +  +K   ++      T ++ +  + G ++DA  + +   
Sbjct: 523 TSVLHACSHAGLVNEGFSLFNFMLKQHQIISHVDHYTCMIDLLGRAGRLNDAYNLIRTMP 582

Query: 417 LR-DTASWNMMIGGYVKH---GLGEKA 439
           +  + A W  ++G  V H    LGE A
Sbjct: 583 ITPNHAVWGALLGACVIHENVELGEVA 609



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 153/311 (49%), Gaps = 5/311 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLK 59
           M+ A  + K M + +VV+W  L+NGY  +GD +  + + C M   E  K +  S++++L 
Sbjct: 265 MKEAWLLAKGMDDKDVVTWTTLINGYILNGDARSAL-MLCGMMQCEGVKPNSVSIASLLS 323

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
              +  Y+  G+ +HA AIR     +  +  +L++MY+KC   + + KVF          
Sbjct: 324 ACGSLVYLNHGKCLHAWAIRQKIESEVIVETALINMYAKCNCGNLSYKVFMGTSKKRTAP 383

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W A+++   Q    +EA ++F  M    V+P+     SL+ A     D +   +IH  + 
Sbjct: 384 WNALLSGFIQNRLAREAIELFKQMLVKDVQPDHATFNSLLPAYAILADLQQAMNIHCYLI 443

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA--HQDSVSWNALFSRFQDYESPDQG 237
           + GF     V + LV +Y + G + Y  ++F  I+   +D + W+A+ + +  +      
Sbjct: 444 RSGFLYRLEVASILVDIYSKCGSLGYAHQIFNIISLKDKDIIIWSAIIAAYGKHGHGKMA 503

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG-TSLVD 296
           +++F QM+  G KPN  TF  +L ACS    V  G  L    +K     +HV   T ++D
Sbjct: 504 VKLFNQMVQSGVKPNHVTFTSVLHACSHAGLVNEGFSLFNFMLKQHQIISHVDHYTCMID 563

Query: 297 MYDKSGCLEDA 307
           +  ++G L DA
Sbjct: 564 LLGRAGRLNDA 574



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 129/296 (43%), Gaps = 10/296 (3%)

Query: 273 KQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQA 332
           K+LHA  +   +  +  + + L   Y +      A   FD L+   LF++ A++  Y Q 
Sbjct: 31  KRLHALILTLGIFSSSNLCSKLATTYAQCHHASYASHLFDKLSQPCLFSWNAMMRMYVQI 90

Query: 333 GEAEMALKCFRKMRLEG-IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFV 391
           G    AL  F +M   G    ++FT    +  C  ++ +  G  +H    K G+  D FV
Sbjct: 91  GRPFDALNLFVEMLGSGRTLPDKFTYPVVIKACGDLSLIDVGVGIHGQTFKFGYDSDTFV 150

Query: 392 STALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGY 451
              L+AMY   G  + A+ VF     R   SWN MI GY ++   E A+  +  M+D G 
Sbjct: 151 QNTLLAMYMNAGEKEAAQLVFDPMQERTVISWNTMINGYFRNNCAEDAVNVYGRMMDVGV 210

Query: 452 VPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIE 511
            PD  T V VL AC  +  +E G++  + +++  G    I     ++D+  + G+  E  
Sbjct: 211 EPDCATVVSVLPACGLLKNVELGREVHTLVQE-KGFWGNIVVRNALVDMYVKCGQMKEAW 269

Query: 512 NFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
             + +     + + W  L+     +G       DA   L L   M+   V P+ +S
Sbjct: 270 -LLAKGMDDKDVVTWTTLINGYILNG-------DARSALMLCGMMQCEGVKPNSVS 317


>gi|449455116|ref|XP_004145299.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 722

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 174/604 (28%), Positives = 321/604 (53%), Gaps = 14/604 (2%)

Query: 6   RVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG---FA 62
           +VF S+ + N+  +NA+L      G+ ++ + ++  M        + +   VL+    F+
Sbjct: 80  QVFCSVIDPNLTLFNAILRNLTRYGESERTLLVYQQMVAKSMHPDEETYPFVLRSCSSFS 139

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYR--IKDPDVVAW 120
           N G+   G+ +H   ++LG  L   ++ +L +MY +C   +NA ++F +  +KD   + W
Sbjct: 140 NVGF---GRTIHGYLVKLGFDLFDVVATALAEMYEECIEFENAHQLFDKRSVKD---LGW 193

Query: 121 GAIITCLDQQGCCQEAA-KIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            + +T    Q    E   ++F  M    + P+ F   +L+R        +  + +H +  
Sbjct: 194 PSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNLLRFIAGLNSIQLAKIVHCIAI 253

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
                 D LV  A++S+Y +   +    ++F+ +  +D V WN + + +     P + L 
Sbjct: 254 VSKLSGDLLVNTAVLSLYSKLRSLVDARKLFDKMPEKDRVVWNIMIAAYAREGKPTECLE 313

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F  M   G + ++ T + ++ + + L  V +GKQ HAH +++  D    V  SL+DMY 
Sbjct: 314 LFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQTHAHILRNGSDSQVSVHNSLIDMYC 373

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           +   L+ A   F+ + +K + +++A+I  Y + G++  AL  F KM+ +GI+++   + +
Sbjct: 374 ECKILDSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTALSLFSKMKSDGIQADFVIMIN 433

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL-- 417
            L     +  L N + LH  ++K G      ++TAL+  YAKCGSI+ A+ +F+   +  
Sbjct: 434 ILPAFVHIGALENVKYLHGYSMKLGLTSLPSLNTALLITYAKCGSIEMAQRLFEEEKIDD 493

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           +D   WN MI  +  HG   +  + +  M      PD++TF+ +L+AC + GL+E+GK+ 
Sbjct: 494 KDLIMWNSMISAHANHGDWSQCFKLYNRMKCSNSKPDQVTFLGLLTACVNSGLVEKGKEF 553

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F  + + YG  P+ +H+ACM+++LGRAG  +E    +    + P+A VW  LL AC  H 
Sbjct: 554 FKEMTESYGCQPSQEHYACMVNLLGRAGLISEAGELVKNMPIKPDARVWGPLLSACKMHP 613

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
             +L E  AEKL+ +EP+   NY+  S+I A  G+W+  + +R+ L ++G+KK P CSW+
Sbjct: 614 GSKLAEFAAEKLINMEPRNAGNYILLSNIYAAAGKWDGVAKMRSFLRNKGLKKIPGCSWL 673

Query: 598 EVDG 601
           E++G
Sbjct: 674 EING 677



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 126/488 (25%), Positives = 233/488 (47%), Gaps = 6/488 (1%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
           L+T+   F+    I+  Q +HA  I  G   +  LS  L+D Y+  GL +++L+VF  + 
Sbjct: 27  LNTLSLLFSRCNSIQHLQQIHARFILHGFHQNPTLSSKLIDCYANLGLLNHSLQVFCSVI 86

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES 173
           DP++  + AI+  L + G  +    ++  M   S+ P++     ++R+ +   +   G +
Sbjct: 87  DPNLTLFNAILRNLTRYGESERTLLVYQQMVAKSMHPDEETYPFVLRSCSSFSNVGFGRT 146

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           IH  + K GF+   +V  AL  MY E        ++F+  + +D + W +  +       
Sbjct: 147 IHGYLVKLGFDLFDVVATALAEMYEECIEFENAHQLFDKRSVKD-LGWPSSLTTEGPQND 205

Query: 234 PDQGL-RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
             +G+ R+F +M+ +   P+  TF  +L+  + L+ +   K +H   I   L G+ +V T
Sbjct: 206 NGEGIFRVFGRMIAEQLVPDSFTFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVNT 265

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           +++ +Y K   L DA   FD +  KD   +  +I +YA+ G+    L+ F+ M   GI+S
Sbjct: 266 AVLSLYSKLRSLVDARKLFDKMPEKDRVVWNIMIAAYAREGKPTECLELFKSMARSGIRS 325

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
           + FT    ++  + +  +  G+  H+  ++ G    + V  +L+ MY +C  +D A  +F
Sbjct: 326 DLFTALPVISSIAQLKCVDWGKQTHAHILRNGSDSQVSVHNSLIDMYCECKILDSACKIF 385

Query: 413 KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE 472
                +   SW+ MI GYVK+G    AL  F  M  +G   D +  + +L A  H+G +E
Sbjct: 386 NWMTDKSVISWSAMIKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINILPAFVHIGALE 445

Query: 473 EGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV-WENLL 530
             K  H  S+K   G+T        ++    + G     +    E K+    L+ W +++
Sbjct: 446 NVKYLHGYSMK--LGLTSLPSLNTALLITYAKCGSIEMAQRLFEEEKIDDKDLIMWNSMI 503

Query: 531 GACSWHGN 538
            A + HG+
Sbjct: 504 SAHANHGD 511



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 144/308 (46%), Gaps = 3/308 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+++F  MPE + V WN ++  YA  G   + + LF SM     +   F+   V+   A 
Sbjct: 280 ARKLFDKMPEKDRVVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIAQ 339

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G+  HA  +R G      +  SL+DMY +C + D+A K+F  + D  V++W A+
Sbjct: 340 LKCVDWGKQTHAHILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMTDKSVISWSAM 399

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    + G    A  +F+ M+   ++ +  ++ +++ A    G     + +H    K G 
Sbjct: 400 IKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINILPAFVHIGALENVKYLHGYSMKLGL 459

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVF--EAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
            S   +  AL+  Y + G +    R+F  E I  +D + WN++ S   ++    Q  +++
Sbjct: 460 TSLPSLNTALLITYAKCGSIEMAQRLFEEEKIDDKDLIMWNSMISAHANHGDWSQCFKLY 519

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAH-TIKHSLDGNHVVGTSLVDMYDK 300
            +M     KP+  TF+ +L AC +   V  GK+     T  +    +      +V++  +
Sbjct: 520 NRMKCSNSKPDQVTFLGLLTACVNSGLVEKGKEFFKEMTESYGCQPSQEHYACMVNLLGR 579

Query: 301 SGCLEDAG 308
           +G + +AG
Sbjct: 580 AGLISEAG 587



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 111/230 (48%), Gaps = 4/230 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A ++F  M + +V+SW+A++ GY ++G     + LF  MK    +     +  +L  
Sbjct: 378 LDSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTALSLFSKMKSDGIQADFVIMINILPA 437

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVF--YRIKDPDVV 118
           F + G ++  + +H  +++LG      L+ +L+  Y+KCG  + A ++F   +I D D++
Sbjct: 438 FVHIGALENVKYLHGYSMKLGLTSLPSLNTALLITYAKCGSIEMAQRLFEEEKIDDKDLI 497

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            W ++I+     G   +  K++N M+ S+ KP+Q     L+ A   +G    G+     +
Sbjct: 498 MWNSMISAHANHGDWSQCFKLYNRMKCSNSKPDQVTFLGLLTACVNSGLVEKGKEFFKEM 557

Query: 179 CK-YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALFS 226
            + YG +        +V++    G +S    + + +    D+  W  L S
Sbjct: 558 TESYGCQPSQEHYACMVNLLGRAGLISEAGELVKNMPIKPDARVWGPLLS 607


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 161/496 (32%), Positives = 273/496 (55%), Gaps = 5/496 (1%)

Query: 105 ALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTE 164
           AL++ ++I  P    +  +I    +    Q+  K+   ++ S   P  F+L  L+    +
Sbjct: 58  ALQILHQIDKPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAK 117

Query: 165 TGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNAL 224
                  + +   +     E D    N L+S Y + G +     +F+ +  +D+ SW A+
Sbjct: 118 CDSLMDSQKLFDEMP----ERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAM 173

Query: 225 FSRFQDYESPDQGLRIFYQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS 283
            S +  ++ P++ L +F  M      K N  T    L A +++  +  GK++H + ++  
Sbjct: 174 ISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTG 233

Query: 284 LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFR 343
           LD + VV ++L DMY K G +E+A   FD + ++D+  +TA+I  Y Q G  +     F 
Sbjct: 234 LDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFA 293

Query: 344 KMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403
            +   GI+ NEFT +  LN C+   +   G+ +H    + G     F ++ALV MY+KCG
Sbjct: 294 DLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCG 353

Query: 404 SIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           ++  AE VFK +   D  SW  +I GY ++G  ++A+  F +++  G  PD ITFV VLS
Sbjct: 354 NMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLS 413

Query: 464 ACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNA 523
           AC+H GL+++G  +F SIK+ YG+T T  H+AC+ID+L R+G+F E EN I++  + P+ 
Sbjct: 414 ACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDK 473

Query: 524 LVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALL 583
            +W +LLG C  HGN++L ++ AE L E+EP+  + YV  ++I AT G W++ + +R  +
Sbjct: 474 FLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTM 533

Query: 584 SSQGIKKEPSCSWIEV 599
             +G+ K+P  SWI +
Sbjct: 534 DDRGVVKKPGLSWIAI 549



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 114/458 (24%), Positives = 205/458 (44%), Gaps = 50/458 (10%)

Query: 34  KVMHLFCSMKDMEK---------KFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCAL 84
           + +H+ C    +++         K S    ST+++    S  ++ G+ VH      G   
Sbjct: 44  EAIHILCQQNRLKEALQILHQIDKPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVP 103

Query: 85  DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLM- 143
             F+   L++MY+KC    ++ K+F  + + D+ +W  +I+   + G  QEA  +F+ M 
Sbjct: 104 GLFILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMP 163

Query: 144 -------------------------------RESSVKPNQFVLTSLVRATTETGDQRCGE 172
                                          R  + K N+F ++S + A       R G+
Sbjct: 164 ERDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGK 223

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
            IH  I + G +SD +V +AL  MY + G +     +F+ +  +D V+W A+  R+    
Sbjct: 224 EIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDG 283

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
              +G  +F  +L  G +PN  TF  +L AC++ +    GK++H +  +   D      +
Sbjct: 284 RRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAAS 343

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           +LV MY K G +  A   F      DLF++T++I  YAQ G+ + A++ F  +   G + 
Sbjct: 344 ALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQP 403

Query: 353 NEFTLASCLNGCSPVATLANG-RLLHSIAVKTG--HLLDMFVSTALVAMYAKCGSIDDAE 409
           +  T    L+ C+    +  G    HSI  + G  H  D +    ++ + A+ G  D+AE
Sbjct: 404 DHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYA--CIIDLLARSGQFDEAE 461

Query: 410 AVFKGSALR-DTASWNMMIGGYVKHG---LGEKALEAF 443
            +    +++ D   W  ++GG   HG   L ++A EA 
Sbjct: 462 NIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEAL 499



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 171/365 (46%), Gaps = 34/365 (9%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLK 59
           ++ AK +F  MPE +  SW A+++GY       + + LF  MK  +  K +KF++S+ L 
Sbjct: 152 LQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALA 211

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
             A    ++ G+ +H   +R G   D+ +  +L DMY KCG  + A  +F ++ D D+V 
Sbjct: 212 AAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVT 271

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W A+I    Q G  +E   +F  +  S ++PN+F  + ++ A      +  G+ +H  + 
Sbjct: 272 WTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMT 331

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           + GF+  +   +ALV MY + G +    RVF+     D  SW +L + +     PD+ +R
Sbjct: 332 RVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIR 391

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
            F  ++  G +P+  TF+ +L AC+           HA  +   LD  H +        +
Sbjct: 392 YFELLVKSGTQPDHITFVGVLSACA-----------HAGLVDKGLDYFHSIK-------E 433

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           + G    A              Y  II   A++G+ + A     KM    +K ++F  AS
Sbjct: 434 QYGLTHTAD------------HYACIIDLLARSGQFDEAENIISKM---SMKPDKFLWAS 478

Query: 360 CLNGC 364
            L GC
Sbjct: 479 LLGGC 483


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 193/631 (30%), Positives = 324/631 (51%), Gaps = 40/631 (6%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDM---EKKFSKFSLSTVLKGFAN 63
           +F +MP  + V++N+L+         ++ +    +++DM       S F+L +VL   ++
Sbjct: 118 LFNAMPSRDAVTFNSLIAALCLF---RRWLPALDALRDMLLEGHPLSSFTLVSVLLACSH 174

Query: 64  -SGYIKAGQVVHAMAIRLGCALD---KFLSCSLVDMYSKCGLADNALKVFYRIKDPD--- 116
            +  ++ G+  HA A++ G  LD   +F   +L+ MY++ GL D+A  +F  +   D   
Sbjct: 175 LAEDLRLGREAHAFALKNGF-LDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPG 233

Query: 117 --VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
             VV W  +++ L Q G C EA ++   M    V+P+     S + A ++      G  +
Sbjct: 234 GGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREM 293

Query: 175 HAVICK-YGFESDTLVGNALVSMYMENGRVSYGSRVFEAI--AHQDSVSWNALFSRFQDY 231
           HA + K     +++ V +ALV MY  + RV    RVF+ +   H+    WNA+   +   
Sbjct: 294 HAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQA 353

Query: 232 ESPDQGLRIFYQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
              ++ L +F +M  + G  P+  T   +L AC+        + +H + +K  +  N  V
Sbjct: 354 GMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNPFV 413

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG- 349
             +L+D+Y + G +E A   F ++  +D+ ++  +IT     G    A +  R+M+ +G 
Sbjct: 414 QNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGR 473

Query: 350 -----------------IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS 392
                            +  N  TL + L GC+ +A  A G+ +H  A++     D+ V 
Sbjct: 474 FTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVG 533

Query: 393 TALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF-RMMLDEGY 451
           +ALV MYAKCG +  + AVF     R+  +WN++I  Y  HGLG++A+  F RM++    
Sbjct: 534 SALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEA 593

Query: 452 VPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIE 511
            P+E+TF+  L+ACSH G+++ G + F S+K+ +G+ PT    AC +DILGRAG+  E  
Sbjct: 594 KPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLDEAY 653

Query: 512 NFITETKLTPNAL-VWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQ 570
           + IT  +     +  W + LGAC  H N+ L E  AE+L +LEP   S+YV   +I +  
Sbjct: 654 SIITSMEPGEQQVSAWSSFLGACRLHRNVPLGEIAAERLFQLEPDEASHYVLLCNIYSAA 713

Query: 571 GRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           G W   S VR  +  +G+ KEP CSWIE+DG
Sbjct: 714 GLWEKSSEVRNRMRQRGVSKEPGCSWIELDG 744



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 111/387 (28%), Positives = 184/387 (47%), Gaps = 24/387 (6%)

Query: 172 ESIHAVICK----YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR 227
            SIH    +    +GF     V NAL++ Y   G ++    +F A+  +D+V++N+L + 
Sbjct: 79  RSIHGAALRRDLLHGFTP--AVANALLTAYARCGDLTAALALFNAMPSRDAVTFNSLIAA 136

Query: 228 FQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLS-DVGFGKQLHAHTIKHS-LD 285
              +      L     MLL+G   +  T + +L ACS L+ D+  G++ HA  +K+  LD
Sbjct: 137 LCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLD 196

Query: 286 GNHVVG-TSLVDMYDKSGCLEDAGVAFDSLANKD-----LFAYTAIITSYAQAGEAEMAL 339
           G+      +L+ MY + G ++DA + F S+   D     +  +  +++   Q+G    A+
Sbjct: 197 GDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAI 256

Query: 340 KCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL-LDMFVSTALVAM 398
           +    M   G++ +  T AS L  CS +  L+ GR +H+  +K   L  + FV++ALV M
Sbjct: 257 EVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDM 316

Query: 399 YAKCGSIDDAEAVFK--GSALRDTASWNMMIGGYVKHGLGEKALEAF-RMMLDEGYVPDE 455
           YA    +  A  VF       R    WN M+ GY + G+ E+ALE F RM  + G VP E
Sbjct: 317 YASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSE 376

Query: 456 ITFVVVLSACSHMGLIEEGKK--HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENF 513
            T   VL AC+       GK+  H   +K+     P +++   ++D+  R G   E   +
Sbjct: 377 TTIAGVLPACARSETF-AGKEAVHGYVLKRGMADNPFVQN--ALMDLYARLGDM-EAARW 432

Query: 514 ITETKLTPNALVWENLLGACSWHGNIE 540
           I       + + W  L+  C   G+I 
Sbjct: 433 IFAAIEPRDVVSWNTLITGCVVQGHIH 459



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 113/233 (48%), Gaps = 10/233 (4%)

Query: 261 KACSSLSDVGFGKQLHAHTIKHSL--DGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKD 318
           K+ ++L  +   + +H   ++  L       V  +L+  Y + G L  A   F+++ ++D
Sbjct: 67  KSAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAALALFNAMPSRD 126

Query: 319 LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT-LANGRLLH 377
              + ++I +         AL   R M LEG   + FTL S L  CS +A  L  GR  H
Sbjct: 127 AVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAEDLRLGREAH 186

Query: 378 SIAVKTGHL--LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA-----SWNMMIGGY 430
           + A+K G L   + F   AL++MYA+ G +DDA+ +F      D+      +WN M+   
Sbjct: 187 AFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLL 246

Query: 431 VKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           V+ G   +A+E    M+  G  PD ITF   L ACS + ++  G++  + + K
Sbjct: 247 VQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLK 299



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 103/248 (41%), Gaps = 24/248 (9%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFS---------- 50
           ME A+ +F ++   +VVSWN L+ G    G       L   M+  + +F+          
Sbjct: 427 MEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQ-QGRFTDATTEDGIAG 485

Query: 51  ---------KFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGL 101
                      +L T+L G A       G+ +H  A+R     D  +  +LVDMY+KCG 
Sbjct: 486 TDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGC 545

Query: 102 ADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESS-VKPNQFVLTSLVR 160
              +  VF R+   +V+ W  +I      G   EA  +F+ M  S+  KPN+    + + 
Sbjct: 546 LALSRAVFDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALA 605

Query: 161 ATTETG-DQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAI--AHQD 217
           A + +G   R  E  H++   +G +    +    V +    GR+     +  ++    Q 
Sbjct: 606 ACSHSGMVDRGMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQ 665

Query: 218 SVSWNALF 225
             +W++  
Sbjct: 666 VSAWSSFL 673



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 87/225 (38%), Gaps = 43/225 (19%)

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTG--HLLDMFVSTALVAMYAKCGSIDDAEA 410
           + F L       + + +L   R +H  A++    H     V+ AL+  YA+CG +  A A
Sbjct: 58  DHFALPPAAKSAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAALA 117

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH--- 467
           +F     RD  ++N +I           AL+A R ML EG+     T V VL ACSH   
Sbjct: 118 LFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAE 177

Query: 468 -----------------------------------MGLIEEGKKHFSSIKKIYGITPTIK 492
                                              +GL+++ +  F S+         + 
Sbjct: 178 DLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVV 237

Query: 493 HFACMIDIL---GRAGKFTEIENFITETKLTPNALVWENLLGACS 534
            +  M+ +L   GR G+  E+   +    + P+ + + + L ACS
Sbjct: 238 TWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACS 282


>gi|15218851|ref|NP_171853.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180299|sp|Q9LR69.1|PPR8_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g03540
 gi|9280645|gb|AAF86514.1|AC002560_7 F21B7.16 [Arabidopsis thaliana]
 gi|91805735|gb|ABE65596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189463|gb|AEE27584.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 609

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 167/528 (31%), Positives = 289/528 (54%), Gaps = 7/528 (1%)

Query: 74  HAMAIRLGCALDKFLSCSLVDMYSKCGLA-DNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           HA  ++ G   D+ +  SL+ +Y K G       +VF      D ++W ++++       
Sbjct: 84  HAHVVKSGLETDRNVGNSLLSLYFKLGPGMRETRRVFDGRFVKDAISWTSMMSGYVTGKE 143

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
             +A ++F  M    +  N+F L+S V+A +E G+ R G   H V+  +GFE +  + + 
Sbjct: 144 HVKALEVFVEMVSFGLDANEFTLSSAVKACSELGEVRLGRCFHGVVITHGFEWNHFISST 203

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL-KGFKP 251
           L  +Y  N       RVF+ +   D + W A+ S F   +  ++ L +FY M   KG  P
Sbjct: 204 LAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVP 263

Query: 252 NMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAF 311
           +  TF  +L AC +L  +  GK++H   I + +  N VV +SL+DMY K G + +A   F
Sbjct: 264 DGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVF 323

Query: 312 DSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLA 371
           + ++ K+  +++A++  Y Q GE E A++ FR+M     + + +   + L  C+ +A + 
Sbjct: 324 NGMSKKNSVSWSALLGGYCQNGEHEKAIEIFREME----EKDLYCFGTVLKACAGLAAVR 379

Query: 372 NGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV 431
            G+ +H   V+ G   ++ V +AL+ +Y K G ID A  V+   ++R+  +WN M+    
Sbjct: 380 LGKEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDSASRVYSKMSIRNMITWNAMLSALA 439

Query: 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI 491
           ++G GE+A+  F  M+ +G  PD I+F+ +L+AC H G+++EG+ +F  + K YGI P  
Sbjct: 440 QNGRGEEAVSFFNDMVKKGIKPDYISFIAILTACGHTGMVDEGRNYFVLMAKSYGIKPGT 499

Query: 492 KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI-ELDEKDAEKLL 550
           +H++CMID+LGRAG F E EN +   +   +A +W  LLG C+ + +   + E+ A++++
Sbjct: 500 EHYSCMIDLLGRAGLFEEAENLLERAECRNDASLWGVLLGPCAANADASRVAERIAKRMM 559

Query: 551 ELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           ELEPK   +YV  S++    GR  D   +R L+  +G+ K    SWI+
Sbjct: 560 ELEPKYHMSYVLLSNMYKAIGRHGDALNIRKLMVRRGVAKTVGQSWID 607



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 115/457 (25%), Positives = 226/457 (49%), Gaps = 21/457 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M   +RVF      + +SW ++++GY    +  K + +F  M       ++F+LS+ +K 
Sbjct: 113 MRETRRVFDGRFVKDAISWTSMMSGYVTGKEHVKALEVFVEMVSFGLDANEFTLSSAVKA 172

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +  G ++ G+  H + I  G   + F+S +L  +Y       +A +VF  + +PDV+ W
Sbjct: 173 CSELGEVRLGRCFHGVVITHGFEWNHFISSTLAYLYGVNREPVDARRVFDEMPEPDVICW 232

Query: 121 GAIITCLDQQGCCQEAAKIFNLM-RESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            A+++   +    +EA  +F  M R   + P+     +++ A       + G+ IH  + 
Sbjct: 233 TAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLI 292

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
             G  S+ +V ++L+ MY + G V    +VF  ++ ++SVSW+AL   +      ++ + 
Sbjct: 293 TNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAIE 352

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           IF +M  K    ++  F  +LKAC+ L+ V  GK++H   ++    GN +V ++L+D+Y 
Sbjct: 353 IFREMEEK----DLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLYG 408

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           KSGC++ A   +  ++ +++  + A++++ AQ G  E A+  F  M  +GIK +  +  +
Sbjct: 409 KSGCIDSASRVYSKMSIRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISFIA 468

Query: 360 CLNGCSPVATLANGR-----LLHSIAVKTG--HLLDMFVSTALVAMYAKCGSIDDAEAVF 412
            L  C     +  GR     +  S  +K G  H       + ++ +  + G  ++AE + 
Sbjct: 469 ILTACGHTGMVDEGRNYFVLMAKSYGIKPGTEHY------SCMIDLLGRAGLFEEAENLL 522

Query: 413 KGSALRDTAS-WNMMIGGYVKHGLGEKALE--AFRMM 446
           + +  R+ AS W +++G    +    +  E  A RMM
Sbjct: 523 ERAECRNDASLWGVLLGPCAANADASRVAERIAKRMM 559



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 206/413 (49%), Gaps = 10/413 (2%)

Query: 131 GCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVG 190
           G   EA +I N    S +     +  SL++   +      G   HA + K G E+D  VG
Sbjct: 40  GQLTEAIRILNSTHSSEIPATPKLYASLLQTCNKVFSFIHGIQFHAHVVKSGLETDRNVG 99

Query: 191 NALVSMYMENGR-VSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
           N+L+S+Y + G  +    RVF+    +D++SW ++ S +   +   + L +F +M+  G 
Sbjct: 100 NSLLSLYFKLGPGMRETRRVFDGRFVKDAISWTSMMSGYVTGKEHVKALEVFVEMVSFGL 159

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
             N  T    +KACS L +V  G+  H   I H  + NH + ++L  +Y  +    DA  
Sbjct: 160 DANEFTLSSAVKACSELGEVRLGRCFHGVVITHGFEWNHFISSTLAYLYGVNREPVDARR 219

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFTLASCLNGCSPVA 368
            FD +   D+  +TA+++++++    E AL  F  M R +G+  +  T  + L  C  + 
Sbjct: 220 VFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLR 279

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
            L  G+ +H   +  G   ++ V ++L+ MY KCGS+ +A  VF G + +++ SW+ ++G
Sbjct: 280 RLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLG 339

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGI 487
           GY ++G  EKA+E FR M ++    D   F  VL AC+ +  +  GK+ H   +++  G 
Sbjct: 340 GYCQNGEHEKAIEIFREMEEK----DLYCFGTVLKACAGLAAVRLGKEIHGQYVRR--GC 393

Query: 488 TPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
              +   + +ID+ G++G         ++  +  N + W  +L A + +G  E
Sbjct: 394 FGNVIVESALIDLYGKSGCIDSASRVYSKMSIR-NMITWNAMLSALAQNGRGE 445


>gi|255561305|ref|XP_002521663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539054|gb|EEF40650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 578

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 173/563 (30%), Positives = 300/563 (53%), Gaps = 2/563 (0%)

Query: 30  GDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLS 89
           G   +++  +  +   +   + + + +V+K  + S     G  ++++ ++ G   D  + 
Sbjct: 5   GLNHQILKFYKELHSSDIYANAYIIPSVIKACSFSNCHHFGIQLYSIVLKSGLDSDFVIC 64

Query: 90  CSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK 149
            S +  Y+K    ++ALKVF  +   D ++W  II    Q G   +   +F  M E  + 
Sbjct: 65  NSFISFYAKSSCTESALKVFDTMPLKDPISWNCIINGYFQNGYFTQGFIMFKEMYECGIV 124

Query: 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYG-FESDTLVGNALVSMYMENGRVSYGSR 208
           P   ++ S+V      GD + G +IHA++   G    +  V  +LV  Y ++G      R
Sbjct: 125 PKPELVASVVSVCVRLGDMKLGRAIHALVLIDGRIAKEIFVLTSLVDWYFKSGDSLMALR 184

Query: 209 VFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSD 268
           VF+ I  ++ VSW AL S        +  L  F  M + G +PN  T I IL A + L  
Sbjct: 185 VFDQIEVKNVVSWTALVSGCSANLDYNMALDCFRAMQINGVRPNRVTLIAILPAFAELGC 244

Query: 269 VGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG-CLEDAGVAFDSLANKDLFAYTAIIT 327
              GK++H +  +H  D +H   +SL+ +Y +S   L+ A + F+    KD+  +++II 
Sbjct: 245 AKTGKEIHGYAFRHGFDLDHHFLSSLIHIYCRSREGLQLAKLTFERSNVKDVVMWSSIIG 304

Query: 328 SYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL 387
           SY ++ ++  ALK FR MR +G + N  TL + +  C+ + +L NG   H   VK G   
Sbjct: 305 SYCRSADSIEALKLFRWMRADGTEPNSVTLLAVITACTTLTSLKNGYGTHGYIVKCGLNF 364

Query: 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML 447
           D ++  AL+ MY+KCG +  +  +FK   ++D+ SW+ +I  Y  HG G++AL  F  M 
Sbjct: 365 DTYIGNALINMYSKCGCVVASHQIFKEMHIKDSVSWSTLITAYGLHGHGKEALCLFHEMQ 424

Query: 448 DEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKF 507
            +G  PD +TF+ VLSAC+H GL++EG++ F ++KK   ++ T++H+AC++D+LG++GK 
Sbjct: 425 LQGVEPDAMTFLAVLSACNHSGLVKEGQQIFDNVKKDGKVSLTVEHYACLVDLLGKSGKV 484

Query: 508 TEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            +  + +    + P+  +W +L+ AC  HG +E+ E+ A++L++ EP   +N+   S I 
Sbjct: 485 DDAFDILRAMPMKPSTTIWSSLVSACKIHGRLEIAERLAQELIKSEPSNAANHTLLSMIY 544

Query: 568 ATQGRWNDFSGVRALLSSQGIKK 590
           A  G W     VR L+  QG+ K
Sbjct: 545 AESGNWFAVEDVRRLMRVQGLSK 567



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/442 (26%), Positives = 222/442 (50%), Gaps = 4/442 (0%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E A +VF +MP  + +SWN ++NGY ++G   +   +F  M +         +++V+   
Sbjct: 78  ESALKVFDTMPLKDPISWNCIINGYFQNGYFTQGFIMFKEMYECGIVPKPELVASVVSVC 137

Query: 62  ANSGYIKAGQVVHAMAIRLG-CALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              G +K G+ +HA+ +  G  A + F+  SLVD Y K G +  AL+VF +I+  +VV+W
Sbjct: 138 VRLGDMKLGRAIHALVLIDGRIAKEIFVLTSLVDWYFKSGDSLMALRVFDQIEVKNVVSW 197

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+++          A   F  M+ + V+PN+  L +++ A  E G  + G+ IH    +
Sbjct: 198 TALVSGCSANLDYNMALDCFRAMQINGVRPNRVTLIAILPAFAELGCAKTGKEIHGYAFR 257

Query: 181 YGFESDTLVGNALVSMYMENGR-VSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           +GF+ D    ++L+ +Y  +   +      FE    +D V W+++   +       + L+
Sbjct: 258 HGFDLDHHFLSSLIHIYCRSREGLQLAKLTFERSNVKDVVMWSSIIGSYCRSADSIEALK 317

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F  M   G +PN  T + ++ AC++L+ +  G   H + +K  L+ +  +G +L++MY 
Sbjct: 318 LFRWMRADGTEPNSVTLLAVITACTTLTSLKNGYGTHGYIVKCGLNFDTYIGNALINMYS 377

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K GC+  +   F  +  KD  +++ +IT+Y   G  + AL  F +M+L+G++ +  T  +
Sbjct: 378 KCGCVVASHQIFKEMHIKDSVSWSTLITAYGLHGHGKEALCLFHEMQLQGVEPDAMTFLA 437

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHL-LDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
            L+ C+    +  G+ +     K G + L +     LV +  K G +DDA  + +   ++
Sbjct: 438 VLSACNHSGLVKEGQQIFDNVKKDGKVSLTVEHYACLVDLLGKSGKVDDAFDILRAMPMK 497

Query: 419 -DTASWNMMIGGYVKHGLGEKA 439
             T  W+ ++     HG  E A
Sbjct: 498 PSTTIWSSLVSACKIHGRLEIA 519



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 101/414 (24%), Positives = 199/414 (48%), Gaps = 10/414 (2%)

Query: 130 QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLV 189
           +G   +  K +  +  S +  N +++ S+++A + +     G  +++++ K G +SD ++
Sbjct: 4   KGLNHQILKFYKELHSSDIYANAYIIPSVIKACSFSNCHHFGIQLYSIVLKSGLDSDFVI 63

Query: 190 GNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
            N+ +S Y ++       +VF+ +  +D +SWN + + +       QG  +F +M   G 
Sbjct: 64  CNSFISFYAKSSCTESALKVFDTMPLKDPISWNCIINGYFQNGYFTQGFIMFKEMYECGI 123

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHV----VGTSLVDMYDKSGCLE 305
            P       ++  C  L D+  G+ +HA  +   +DG       V TSLVD Y KSG   
Sbjct: 124 VPKPELVASVVSVCVRLGDMKLGRAIHALVL---IDGRIAKEIFVLTSLVDWYFKSGDSL 180

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
            A   FD +  K++ ++TA+++  +   +  MAL CFR M++ G++ N  TL + L   +
Sbjct: 181 MALRVFDQIEVKNVVSWTALVSGCSANLDYNMALDCFRAMQINGVRPNRVTLIAILPAFA 240

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS-IDDAEAVFKGSALRDTASWN 424
            +     G+ +H  A + G  LD    ++L+ +Y +    +  A+  F+ S ++D   W+
Sbjct: 241 ELGCAKTGKEIHGYAFRHGFDLDHHFLSSLIHIYCRSREGLQLAKLTFERSNVKDVVMWS 300

Query: 425 MMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI 484
            +IG Y +     +AL+ FR M  +G  P+ +T + V++AC+ +  ++ G      I K 
Sbjct: 301 SIIGSYCRSADSIEALKLFRWMRADGTEPNSVTLLAVITACTTLTSLKNGYGTHGYIVKC 360

Query: 485 YGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            G+         +I++  + G          E  +  +++ W  L+ A   HG+
Sbjct: 361 -GLNFDTYIGNALINMYSKCGCVVASHQIFKEMHI-KDSVSWSTLITAYGLHGH 412



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/355 (32%), Positives = 176/355 (49%), Gaps = 11/355 (3%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           +A RVF  +   NVVSW AL++G + + D    +  F +M+    + ++ +L  +L  FA
Sbjct: 181 MALRVFDQIEVKNVVSWTALVSGCSANLDYNMALDCFRAMQINGVRPNRVTLIAILPAFA 240

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMY--SKCGLADNALKVFYRIKDPDVVAW 120
             G  K G+ +H  A R G  LD     SL+ +Y  S+ GL    L  F R    DVV W
Sbjct: 241 ELGCAKTGKEIHGYAFRHGFDLDHHFLSSLIHIYCRSREGLQLAKL-TFERSNVKDVVMW 299

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +II    +     EA K+F  MR    +PN   L +++ A T     + G   H  I K
Sbjct: 300 SSIIGSYCRSADSIEALKLFRWMRADGTEPNSVTLLAVITACTTLTSLKNGYGTHGYIVK 359

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G   DT +GNAL++MY + G V    ++F+ +  +DSVSW+ L + +  +    + L +
Sbjct: 360 CGLNFDTYIGNALINMYSKCGCVVASHQIFKEMHIKDSVSWSTLITAYGLHGHGKEALCL 419

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKH---SLDGNHVVGTSLVDM 297
           F++M L+G +P+  TF+ +L AC+    V  G+Q+  +  K    SL   H     LVD+
Sbjct: 420 FHEMQLQGVEPDAMTFLAVLSACNHSGLVKEGQQIFDNVKKDGKVSLTVEHY--ACLVDL 477

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
             KSG ++D   AFD L    +   T I +S   A +    L+   ++  E IKS
Sbjct: 478 LGKSGKVDD---AFDILRAMPMKPSTTIWSSLVSACKIHGRLEIAERLAQELIKS 529



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 111/228 (48%), Gaps = 2/228 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++LAK  F+     +VV W++++  Y  S D  + + LF  M+    + +  +L  V+  
Sbjct: 281 LQLAKLTFERSNVKDVVMWSSIIGSYCRSADSIEALKLFRWMRADGTEPNSVTLLAVITA 340

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 +K G   H   ++ G   D ++  +L++MYSKCG    + ++F  +   D V+W
Sbjct: 341 CTTLTSLKNGYGTHGYIVKCGLNFDTYIGNALINMYSKCGCVVASHQIFKEMHIKDSVSW 400

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +IT     G  +EA  +F+ M+   V+P+     +++ A   +G  + G+ I   + K
Sbjct: 401 STLITAYGLHGHGKEALCLFHEMQLQGVEPDAMTFLAVLSACNHSGLVKEGQQIFDNVKK 460

Query: 181 YGFESDTLVGNA-LVSMYMENGRVSYGSRVFEAIAHQDSVS-WNALFS 226
            G  S T+   A LV +  ++G+V     +  A+  + S + W++L S
Sbjct: 461 DGKVSLTVEHYACLVDLLGKSGKVDDAFDILRAMPMKPSTTIWSSLVS 508


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 157/430 (36%), Positives = 242/430 (56%), Gaps = 1/430 (0%)

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
           G  +H  + +  F  D ++ N L++MY + G +    +VF+ +  +D V+W  L S +  
Sbjct: 70  GRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQ 129

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
           ++ P   L +F QML  GF PN  T   ++KA ++      G QLH   +K   D N  V
Sbjct: 130 HDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHV 189

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
           G++L+D+Y + G ++DA + FD+L +++  ++ A+I  +A+    E AL+ F+ M  EG 
Sbjct: 190 GSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGF 249

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
           + + F+ AS    CS    L  G+ +H+  +K+G  L  F    L+ MYAK GSI DA  
Sbjct: 250 RPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARK 309

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           +F   A RD  SWN ++  Y +HG G +A+  F  M   G  P+EI+F+ VL+ACSH GL
Sbjct: 310 IFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGL 369

Query: 471 IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
           ++EG  ++  +KK  GI     H+  ++D+LGRAG       FI E  + P A +W+ LL
Sbjct: 370 LDEGWHYYELMKKD-GIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALL 428

Query: 531 GACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKK 590
            AC  H N EL    AE + EL+P     +V   +I A+ GRWND + VR  +   G+KK
Sbjct: 429 NACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKK 488

Query: 591 EPSCSWIEVD 600
           EP+CSW+E++
Sbjct: 489 EPACSWVEIE 498



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 116/380 (30%), Positives = 195/380 (51%), Gaps = 1/380 (0%)

Query: 55  STVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD 114
           +T+LK       +  G++VH   I+     D  ++ +L++MY+KCG  + A KVF ++ +
Sbjct: 55  NTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPE 114

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
            D V W  +I+   Q     +A  +FN M      PN+F L+S+++A        CG  +
Sbjct: 115 RDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQL 174

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H    K GF+S+  VG+AL+ +Y   G +     VF+A+  ++ VSWNAL +        
Sbjct: 175 HGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGT 234

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
           ++ L +F  ML +GF+P+  ++  +  ACSS   +  GK +HA+ IK         G +L
Sbjct: 235 EKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTL 294

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           +DMY KSG + DA   FD LA +D+ ++ +++T+YAQ G    A+  F +MR  GI+ NE
Sbjct: 295 LDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNE 354

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            +  S L  CS    L  G   + +  K G +L+ +    +V +  + G ++ A    + 
Sbjct: 355 ISFLSVLTACSHSGLLDEGWHYYELMKKDGIVLEAWHYVTIVDLLGRAGDLNRALRFIEE 414

Query: 415 SALRDTAS-WNMMIGGYVKH 433
             +  TA+ W  ++     H
Sbjct: 415 MPIEPTAAIWKALLNACRMH 434



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 120/486 (24%), Positives = 206/486 (42%), Gaps = 71/486 (14%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A++VF  MPE + V+W  L++GY++       + LF  M       ++F+LS+V+K 
Sbjct: 102 LEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKA 161

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A       G  +H   ++ G   +  +  +L+D+Y++ GL D+A  VF  ++  + V+W
Sbjct: 162 AAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSW 221

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I    ++   ++A ++F  M     +P+ F   SL  A + TG    G+ +HA + K
Sbjct: 222 NALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIK 281

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G +     GN L+ MY ++G +    ++F+ +A +D VSWN+L + +  +   ++ +  
Sbjct: 282 SGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCW 341

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F +M   G +PN  +F+ +L ACS                                    
Sbjct: 342 FEEMRRGGIRPNEISFLSVLTACS-----------------------------------H 366

Query: 301 SGCLEDAGVAFDSLANKD-----LFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
           SG L D G  +  L  KD      + Y  I+    +AG+   AL+   +M +E   +   
Sbjct: 367 SGLL-DEGWHYYELMKKDGIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAA--- 422

Query: 356 TLASCLNGCSPVATLANGRLLHSIAVKTGHLL-----DMFVSTALVAMYAKCGSIDDAEA 410
              + LN C        G      A    H+      D      L  +YA  G  +DA  
Sbjct: 423 IWKALLNACRMHKNTELG------AYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAAR 476

Query: 411 VFK-----GSALRDTASW-------NMMIGGYVKHGLGEKALEAFRMMLDE----GYVPD 454
           V K     G       SW       +M +    +H   E+    +  +L +    GYVPD
Sbjct: 477 VRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPD 536

Query: 455 EITFVV 460
               +V
Sbjct: 537 TSHVIV 542



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 151/310 (48%), Gaps = 9/310 (2%)

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFI-VILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
           +S D+ L+     L   + P    F   +LK C+    +  G+ +H H I+     + V+
Sbjct: 29  DSDDESLKFPSNDLEGSYIPVDRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVM 88

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
             +L++MY K G LE+A   FD +  +D   +T +I+ Y+Q      AL  F +M   G 
Sbjct: 89  NNTLLNMYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGF 148

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
             NEFTL+S +   +       G  LH   VK G   ++ V +AL+ +Y + G +DDA+ 
Sbjct: 149 SPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQL 208

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           VF     R+  SWN +I G+ +    EKALE F+ ML EG+ P   ++  +  ACS  G 
Sbjct: 209 VFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGF 268

Query: 471 IEEGK-KHFSSIKKIYGITPTIKHFA--CMIDILGRAGKFTEIENFITETKLTPNALVWE 527
           +E+GK  H   IK    +      FA   ++D+  ++G   +    I +     + + W 
Sbjct: 269 LEQGKWVHAYMIKSGEKLVA----FAGNTLLDMYAKSGSIHDARK-IFDRLAKRDVVSWN 323

Query: 528 NLLGACSWHG 537
           +LL A + HG
Sbjct: 324 SLLTAYAQHG 333


>gi|302809659|ref|XP_002986522.1| hypothetical protein SELMODRAFT_124407 [Selaginella moellendorffii]
 gi|300145705|gb|EFJ12379.1| hypothetical protein SELMODRAFT_124407 [Selaginella moellendorffii]
          Length = 625

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 175/567 (30%), Positives = 302/567 (53%), Gaps = 5/567 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF S+   +++SWN+++  Y++ G G++++ LF   + M+ +    + +++L   + 
Sbjct: 61  ARKVFDSIENKDLISWNSMVVAYSQHGHGEEMLELF---RKMDVEPDSITYASILGACSA 117

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ G+ VHA   R     D  L+ +L++MYSKCG+ ++A +VF  I+  D   W A+
Sbjct: 118 MELLELGKEVHARVSRSRFKSDPALAAALINMYSKCGVLESARRVFDGIQSVDPSPWNAM 177

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+ L Q G  +EA  +F  M+  SV+ ++    +++ A     D   G  IH      G 
Sbjct: 178 ISGLVQHGRAREALGLFERMKAESVRIDKVSYLTILSACCALEDLHEGIRIHEHASACGM 237

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-DSVSWNALFSRFQDYESPDQGLRIFY 242
           + D +V  A+ +MY +  +V    ++F+ +  + + VSWN++ + +       + L ++ 
Sbjct: 238 DKDLVVETAVFNMYSKCRQVDLARKMFDGMNEKTNVVSWNSMIAAYAQSGRGREALELYE 297

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            M  +G +P+  T+   L AC+S      G ++H+   +  +  +  + T++V+MY K G
Sbjct: 298 LMKEEGVQPDDITYAGALGACTSYGGSAKGAEIHSRITESKIRTDVFLDTAIVNMYAKCG 357

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            LE A   F+ +  K+   ++A++ ++ Q G    AL  + +M  EG + +E TLA  L 
Sbjct: 358 ELETAMSYFEKMRRKNAVTWSAMVGAFIQQGYDREALDLYLRMVSEGFQPSEITLAGALA 417

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLD-MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
            CS +  L  G+ +HS    T  L + +F+  +L+ MYAKCG +  A  +F     RD+ 
Sbjct: 418 ACSRIGALQEGKAIHSRIQATETLQNCLFLQNSLLNMYAKCGCLAIANTMFSNLQRRDSF 477

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SWN +I G+  HG  ++ L     M+ +G  PD +TF  VL ACSH GL++ G+ HF S+
Sbjct: 478 SWNTIIVGHAHHGDVDEVLSLHGEMVQDGVDPDYVTFACVLLACSHAGLLDRGRSHFLSM 537

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
              Y I P + H+ C++D+L RAG   E E        TP  + W  LLGAC  HG  + 
Sbjct: 538 TGDYCIKPMLDHYECLVDVLSRAGWAREAEALAMAMPFTPRPVTWTTLLGACKLHGETKR 597

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISA 568
             + A  LLEL  +  S+YV  S++ A
Sbjct: 598 GVEAARSLLELGFECSSSYVLLSNLVA 624



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 130/478 (27%), Positives = 248/478 (51%), Gaps = 12/478 (2%)

Query: 91  SLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKP 150
           SLV  Y++ G   +A KVF  I++ D+++W +++    Q G  +E  ++F   R+  V+P
Sbjct: 47  SLVSAYTRSGDLRSARKVFDSIENKDLISWNSMVVAYSQHGHGEEMLELF---RKMDVEP 103

Query: 151 NQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF 210
           +     S++ A +       G+ +HA + +  F+SD  +  AL++MY + G +    RVF
Sbjct: 104 DSITYASILGACSAMELLELGKEVHARVSRSRFKSDPALAAALINMYSKCGVLESARRVF 163

Query: 211 EAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVG 270
           + I   D   WNA+ S    +    + L +F +M  +  + +  +++ IL AC +L D+ 
Sbjct: 164 DGIQSVDPSPWNAMISGLVQHGRAREALGLFERMKAESVRIDKVSYLTILSACCALEDLH 223

Query: 271 FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK-DLFAYTAIITSY 329
            G ++H H     +D + VV T++ +MY K   ++ A   FD +  K ++ ++ ++I +Y
Sbjct: 224 EGIRIHEHASACGMDKDLVVETAVFNMYSKCRQVDLARKMFDGMNEKTNVVSWNSMIAAY 283

Query: 330 AQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDM 389
           AQ+G    AL+ +  M+ EG++ ++ T A  L  C+     A G  +HS   ++    D+
Sbjct: 284 AQSGRGREALELYELMKEEGVQPDDITYAGALGACTSYGGSAKGAEIHSRITESKIRTDV 343

Query: 390 FVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDE 449
           F+ TA+V MYAKCG ++ A + F+    ++  +W+ M+G +++ G   +AL+ +  M+ E
Sbjct: 344 FLDTAIVNMYAKCGELETAMSYFEKMRRKNAVTWSAMVGAFIQQGYDREALDLYLRMVSE 403

Query: 450 GYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTE 509
           G+ P EIT    L+ACS +G ++EGK   S I+    +   +     ++++  + G    
Sbjct: 404 GFQPSEITLAGALAACSRIGALQEGKAIHSRIQATETLQNCLFLQNSLLNMYAKCGCLA- 462

Query: 510 IENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
           I N +       ++  W  ++   + HG       D +++L L  +M  + V P  ++
Sbjct: 463 IANTMFSNLQRRDSFSWNTIIVGHAHHG-------DVDEVLSLHGEMVQDGVDPDYVT 513



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/458 (27%), Positives = 221/458 (48%), Gaps = 10/458 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+RVF  +  ++   WNA+++G  + G  ++ + LF  MK    +  K S  T+L  
Sbjct: 156 LESARRVFDGIQSVDPSPWNAMISGLVQHGRAREALGLFERMKAESVRIDKVSYLTILSA 215

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD-PDVVA 119
                 +  G  +H  A   G   D  +  ++ +MYSKC   D A K+F  + +  +VV+
Sbjct: 216 CCALEDLHEGIRIHEHASACGMDKDLVVETAVFNMYSKCRQVDLARKMFDGMNEKTNVVS 275

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W ++I    Q G  +EA +++ LM+E  V+P+       + A T  G    G  IH+ I 
Sbjct: 276 WNSMIAAYAQSGRGREALELYELMKEEGVQPDDITYAGALGACTSYGGSAKGAEIHSRIT 335

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           +    +D  +  A+V+MY + G +      FE +  +++V+W+A+   F       + L 
Sbjct: 336 ESKIRTDVFLDTAIVNMYAKCGELETAMSYFEKMRRKNAVTWSAMVGAFIQQGYDREALD 395

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAH-TIKHSLDGNHVVGTSLVDMY 298
           ++ +M+ +GF+P+  T    L ACS +  +  GK +H+      +L     +  SL++MY
Sbjct: 396 LYLRMVSEGFQPSEITLAGALAACSRIGALQEGKAIHSRIQATETLQNCLFLQNSLLNMY 455

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K GCL  A   F +L  +D F++  II  +A  G+ +  L    +M  +G+  +  T A
Sbjct: 456 AKCGCLAIANTMFSNLQRRDSFSWNTIIVGHAHHGDVDEVLSLHGEMVQDGVDPDYVTFA 515

Query: 359 SCLNGCSPVATLANGRLLHSIAVKTGH----LLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
             L  CS    L  GR  H +++   +    +LD +    LV + ++ G   +AEA+   
Sbjct: 516 CVLLACSHAGLLDRGR-SHFLSMTGDYCIKPMLDHY--ECLVDVLSRAGWAREAEALAMA 572

Query: 415 SALRD-TASWNMMIGGYVKHGLGEKALEAFRMMLDEGY 451
                   +W  ++G    HG  ++ +EA R +L+ G+
Sbjct: 573 MPFTPRPVTWTTLLGACKLHGETKRGVEAARSLLELGF 610



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 119/420 (28%), Positives = 215/420 (51%), Gaps = 16/420 (3%)

Query: 149 KPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSR 208
           +PN    + +  A++ +G +   ++I A I    F S+ +V N+LVS Y  +G +    +
Sbjct: 7   RPNGVTFSGV--ASSCSGREEL-DTIQASIAASDFHSNVVVKNSLVSAYTRSGDLRSARK 63

Query: 209 VFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSD 268
           VF++I ++D +SWN++   +  +   ++ L +F +M     +P+  T+  IL ACS++  
Sbjct: 64  VFDSIENKDLISWNSMVVAYSQHGHGEEMLELFRKM---DVEPDSITYASILGACSAMEL 120

Query: 269 VGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITS 328
           +  GK++HA   +     +  +  +L++MY K G LE A   FD + + D   + A+I+ 
Sbjct: 121 LELGKEVHARVSRSRFKSDPALAAALINMYSKCGVLESARRVFDGIQSVDPSPWNAMISG 180

Query: 329 YAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLD 388
             Q G A  AL  F +M+ E ++ ++ +  + L+ C  +  L  G  +H  A   G   D
Sbjct: 181 LVQHGRAREALGLFERMKAESVRIDKVSYLTILSACCALEDLHEGIRIHEHASACGMDKD 240

Query: 389 MFVSTALVAMYAKCGSIDDAEAVFKG-SALRDTASWNMMIGGYVKHGLGEKALEAFRMML 447
           + V TA+  MY+KC  +D A  +F G +   +  SWN MI  Y + G G +ALE + +M 
Sbjct: 241 LVVETAVFNMYSKCRQVDLARKMFDGMNEKTNVVSWNSMIAAYAQSGRGREALELYELMK 300

Query: 448 DEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKF 507
           +EG  PD+IT+   L AC+  G   +G +  S I +    T      A ++++  + G+ 
Sbjct: 301 EEGVQPDDITYAGALGACTSYGGSAKGAEIHSRITESKIRTDVFLDTA-IVNMYAKCGEL 359

Query: 508 TEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
               ++  + +   NA+ W  ++GA    G     +++A   L+L  +M S    PS+I+
Sbjct: 360 ETAMSYFEKMR-RKNAVTWSAMVGAFIQQGY----DREA---LDLYLRMVSEGFQPSEIT 411



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 156/327 (47%), Gaps = 20/327 (6%)

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           MLL+GF+PN  TF  +  +CS   ++     + A         N VV  SLV  Y +SG 
Sbjct: 1   MLLEGFRPNGVTFSGVASSCSGREEL---DTIQASIAASDFHSNVVVKNSLVSAYTRSGD 57

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           L  A   FDS+ NKDL ++ +++ +Y+Q G  E  L+ FRKM +E    +  T AS L  
Sbjct: 58  LRSARKVFDSIENKDLISWNSMVVAYSQHGHGEEMLELFRKMDVE---PDSITYASILGA 114

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           CS +  L  G+ +H+   ++    D  ++ AL+ MY+KCG ++ A  VF G    D + W
Sbjct: 115 CSAMELLELGKEVHARVSRSRFKSDPALAAALINMYSKCGVLESARRVFDGIQSVDPSPW 174

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG---KKHFSS 480
           N MI G V+HG   +AL  F  M  E    D+++++ +LSAC  +  + EG    +H S+
Sbjct: 175 NAMISGLVQHGRAREALGLFERMKAESVRIDKVSYLTILSACCALEDLHEGIRIHEHASA 234

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
                G+   +     + ++  +  +               N + W +++ A +  G   
Sbjct: 235 C----GMDKDLVVETAVFNMYSKCRQVDLARKMFDGMNEKTNVVSWNSMIAAYAQSGR-- 288

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDIS 567
                  + LEL   M+   V P DI+
Sbjct: 289 -----GREALELYELMKEEGVQPDDIT 310


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 175/604 (28%), Positives = 293/604 (48%), Gaps = 65/604 (10%)

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           G   S ++K   ++H   IR     + FL  ++V  Y+    +  A +VF  I  P++ +
Sbjct: 15  GLGASRHVK---MIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQPNLFS 71

Query: 120 WGAIITCLDQQGCCQEAAKIF--------------------------------NLMRESS 147
           W  ++    + G   E  + F                                 +M++ S
Sbjct: 72  WNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFS 131

Query: 148 VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGS 207
               +  L ++++ ++  G    G+ IH  + K GFES  LVG+ L+ MY + G +S   
Sbjct: 132 SNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAK 191

Query: 208 RVFEAI------------------------------AHQDSVSWNALFSRFQDYESPDQG 237
           +VF  +                                +DSVSW+A+           + 
Sbjct: 192 KVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEA 251

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           +  F +M ++G K +   F  +L AC  L  +  G+Q+HA  I+ +L  +  VG++L+DM
Sbjct: 252 IECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDM 311

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K  CL  A   FD +  K++ ++TA++  Y Q G A  A+K F  M+  GI  + +TL
Sbjct: 312 YCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTL 371

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
              ++ C+ +++L  G   H  A+  G +  + VS +LV +Y KCG IDD+  +F    +
Sbjct: 372 GQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNV 431

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           RD  SW  M+  Y + G   +A++ F  M+  G  PD +T   V+SACS  GL+E+G+++
Sbjct: 432 RDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRY 491

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F  +   YGI P+  H++CMID+  R+G+  E   FI      P+A+ W  LL AC   G
Sbjct: 492 FELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSACRNKG 551

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           N+E+ +  AE L+EL+P   + Y   S I A++G+W+  + +R  +  + ++KEP  SWI
Sbjct: 552 NLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDCVAQLRRGMKEKNVRKEPGQSWI 611

Query: 598 EVDG 601
           +  G
Sbjct: 612 KWKG 615



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 135/509 (26%), Positives = 225/509 (44%), Gaps = 78/509 (15%)

Query: 5   KRVFKSMPELNVVSWNALLNGYAESG-DGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           +R F+ +P+ + V+WN L+ GY+ SG  G  V      MKD     ++ +L T+LK  ++
Sbjct: 89  ERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNLTRVTLMTMLKLSSS 148

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD--------- 114
           +G++  G+ +H   I+LG      +   L+DMYSK G   +A KVFY + D         
Sbjct: 149 NGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTL 208

Query: 115 ---------------------PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQF 153
                                 D V+W A+I  L Q G  +EA + F  M+   +K +Q+
Sbjct: 209 MGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQY 268

Query: 154 VLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAI 213
              S++ A    G    G  IHA I +   +    VG+AL+ MY +   + Y   VF+ +
Sbjct: 269 PFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRM 328

Query: 214 AHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGK 273
             ++ VSW A+   +       + ++IF  M   G  P+  T    + AC+++S +  G 
Sbjct: 329 KQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGS 388

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
           Q H   I   L     V  SLV +Y K G ++D+   F+ +  +D  ++TA++++YAQ G
Sbjct: 389 QFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFG 448

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLL-------HSIAVKTGHL 386
            A  A++ F KM   G+K +  TL   ++ CS    +  G+         + I    GH 
Sbjct: 449 RAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPSNGHY 508

Query: 387 LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM 446
                 + ++ ++++ G I++A     G   R                            
Sbjct: 509 ------SCMIDLFSRSGRIEEAMGFINGMPFR---------------------------- 534

Query: 447 LDEGYVPDEITFVVVLSACSHMGLIEEGK 475
                 PD I +  +LSAC + G +E GK
Sbjct: 535 ------PDAIGWTTLLSACRNKGNLEIGK 557



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 109/228 (47%), Gaps = 2/228 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  AK VF  M + NVVSW A++ GY ++G   + + +F  M+        ++L   +  
Sbjct: 318 LHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISA 377

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            AN   ++ G   H  AI  G      +S SLV +Y KCG  D++ ++F  +   D V+W
Sbjct: 378 CANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSW 437

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES-IHAVIC 179
            A+++   Q G   EA ++F+ M +  +KP+   LT ++ A +  G    G+     +I 
Sbjct: 438 TAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMIN 497

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-DSVSWNALFS 226
           +YG        + ++ ++  +GR+         +  + D++ W  L S
Sbjct: 498 EYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLS 545


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 197/641 (30%), Positives = 305/641 (47%), Gaps = 111/641 (17%)

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQ 129
            + VHA  I  G     ++   L+D+Y K     +A  +F  I+ PD+VA   +I     
Sbjct: 34  ARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSS 93

Query: 130 QGCCQEAAKIF----------------------------------NLMRESSVKPNQFVL 155
            G    A +IF                                  +L+R +  +P+ F  
Sbjct: 94  AGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLR-NGFRPDNFTF 152

Query: 156 TSLVRATTE-TGDQRCGESIHAVICKYGFESDTLVGNALVSM------------------ 196
           TS++ A      D++  + IH  + K G    T V NAL+S+                  
Sbjct: 153 TSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAA 212

Query: 197 ----------------------YMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
                                 Y+ NG +    +  + +  +  V+WNA+ S +  +   
Sbjct: 213 ARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFF 272

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK----HSLDGNHVV 290
            + L +F +M L G + +  T+  +L AC++      GKQ+HA+ ++     SLD +  V
Sbjct: 273 LEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSV 332

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSY--------------------- 329
             +L  +Y K G +++A   F+ +  KDL ++ AI++ Y                     
Sbjct: 333 NNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNL 392

Query: 330 ----------AQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSI 379
                     AQ G  E +LK F +M+ EG +  ++  A  +  C+ +A L +GR LH+ 
Sbjct: 393 LTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQ 452

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKA 439
            V+ G    +    AL+ MYAKCG ++ A  +F      D+ SWN MI    +HG G +A
Sbjct: 453 LVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQA 512

Query: 440 LEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMID 499
           LE F +ML E  +PD ITF+ VLS CSH GL+EEG ++F S+  +YGI P   H+A MID
Sbjct: 513 LELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMID 572

Query: 500 ILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESN 559
           +L RAGKF+E ++ I    + P   +WE LL  C  HGN++L  + AE+L EL P+ +  
Sbjct: 573 LLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQHDGT 632

Query: 560 YVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           YV  S++ AT GRW+D + VR L+  +G+KKEP CSWIEV+
Sbjct: 633 YVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVE 673



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 142/299 (47%), Gaps = 35/299 (11%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A++    M E  VV+WNA+++GY   G   + + +F  M  +  ++ +F+ ++VL  
Sbjct: 241 LDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSA 300

Query: 61  FANSGYIKAGQVVHAMAIRL--GCALDKFLSC--SLVDMYSKCGLADNALKVFYRIKDPD 116
            AN+G+   G+ VHA  +R     +LD  LS   +L  +Y KCG  D A +VF ++   D
Sbjct: 301 CANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKD 360

Query: 117 VVAWGAI-------------------------------ITCLDQQGCCQEAAKIFNLMRE 145
           +V+W AI                               I+ L Q G  +E+ K+FN M+ 
Sbjct: 361 LVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKS 420

Query: 146 SSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSY 205
              +P  +     + A         G  +HA + + GF+S    GNAL++MY + G V  
Sbjct: 421 EGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEA 480

Query: 206 GSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACS 264
              +F  + + DSVSWNA+ +    +    Q L +F  ML +   P+  TF+ +L  CS
Sbjct: 481 AHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCS 539



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 122/528 (23%), Positives = 222/528 (42%), Gaps = 84/528 (15%)

Query: 3   LAKRVFKSMPE--LNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           LA+ +F + P    + V +NA++ GY+ + DG   + LF  +     +   F+ ++VL  
Sbjct: 99  LAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGA 158

Query: 61  FA------------NSGYIKAG-----QVVHA-MAIRLGCAL------------------ 84
            A            +   +K+G      V++A +++ + CA                   
Sbjct: 159 LALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFD 218

Query: 85  -----DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKI 139
                D+    +++  Y + G  D A +    + +  VVAW A+I+     G   EA ++
Sbjct: 219 EMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEM 278

Query: 140 FNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY----GFESDTLVGNALVS 195
           F  M    ++ ++F  TS++ A    G    G+ +HA I +       +    V NAL +
Sbjct: 279 FRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALAT 338

Query: 196 MYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY-----------ESP---------- 234
           +Y + G+V    +VF  +  +D VSWNA+ S + +            E P          
Sbjct: 339 LYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVM 398

Query: 235 ----------DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL 284
                     ++ L++F +M  +GF+P    F   + AC+ L+ +  G+QLHA  ++   
Sbjct: 399 ISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGF 458

Query: 285 DGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRK 344
           D +   G +L+ MY K G +E A   F ++   D  ++ A+I +  Q G    AL+ F  
Sbjct: 459 DSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFEL 518

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403
           M  E I  +  T  + L+ CS    +  G R   S++   G          ++ +  + G
Sbjct: 519 MLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAG 578

Query: 404 SIDDAEAVFKGSALRDTAS-WNMMIGGYVKHG---LGEKALEA-FRMM 446
              +A+ + +   +      W  ++ G   HG   LG +A E  F +M
Sbjct: 579 KFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELM 626



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 109/523 (20%), Positives = 210/523 (40%), Gaps = 98/523 (18%)

Query: 130 QGCCQEAAKIFNLMRE-------SSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           Q CC      +++ R        S  KP  ++L  L+    ++ D      +   I    
Sbjct: 21  QQCCPHNPMSYSIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEI---- 76

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEA--IAHQDSVSWNALFSRFQDYESPDQGLRI 240
            + D +    L++ +   G  +    +F A  +  +D+V +NA+ + +         + +
Sbjct: 77  RQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIEL 136

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSL-SDVGFGKQLHAHTIKHS---------------- 283
           F  +L  GF+P+  TF  +L A + +  D    +Q+H   +K                  
Sbjct: 137 FRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFV 196

Query: 284 ------------------------LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL 319
                                    + + +  T+++  Y ++G L+ A    D +  K +
Sbjct: 197 KCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLV 256

Query: 320 FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSI 379
            A+ A+I+ Y   G    AL+ FRKM L GI+ +EFT  S L+ C+      +G+ +H+ 
Sbjct: 257 VAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAY 316

Query: 380 AVKTGHL----LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV---- 431
            ++T         + V+ AL  +Y KCG +D+A  VF    ++D  SWN ++ GYV    
Sbjct: 317 ILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGR 376

Query: 432 ---------------------------KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
                                      ++G GE++L+ F  M  EG+ P +  F   + A
Sbjct: 377 IDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIA 436

Query: 465 CSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNAL 524
           C+ +  +  G++  + + ++ G   ++     +I +  + G   E  + +  T    +++
Sbjct: 437 CAWLAALMHGRQLHAQLVRL-GFDSSLSAGNALITMYAKCG-VVEAAHCLFLTMPYLDSV 494

Query: 525 VWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            W  ++ A   HG+         + LEL   M    + P  I+
Sbjct: 495 SWNAMIAALGQHGH-------GAQALELFELMLKEDILPDRIT 530



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 76/173 (43%), Gaps = 9/173 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  +F +MP L+ VSWNA++    + G G + + LF  M   +    + +  TVL  
Sbjct: 478 VEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLST 537

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            +++G ++ G +   +M+   G    +     ++D+  + G    A  +   +  +P   
Sbjct: 538 CSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPP 597

Query: 119 AWGAIITCLDQQGC----CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD 167
            W A++      G      Q A ++F LM +       +VL S + AT    D
Sbjct: 598 IWEALLAGCRIHGNMDLGIQAAERLFELMPQHD---GTYVLLSNMYATVGRWD 647


>gi|302814959|ref|XP_002989162.1| hypothetical protein SELMODRAFT_129336 [Selaginella moellendorffii]
 gi|300143062|gb|EFJ09756.1| hypothetical protein SELMODRAFT_129336 [Selaginella moellendorffii]
          Length = 674

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 190/578 (32%), Positives = 305/578 (52%), Gaps = 32/578 (5%)

Query: 4   AKRVFKSMPEL--NVVSWNALLNGYAESGDGQKVMHLFCS-MKDMEKKFSKFSLSTVLKG 60
           A+ VF ++P    N+V+W+A+L G   S   Q+ M LF S + D   +  K    TVL  
Sbjct: 101 AREVFDAIPSATKNIVTWSAML-GTNASVWRQQGMELFWSFLNDGSLRVDKVVFITVLGL 159

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +N   +  G   H+ A+  G A D  +  +L+  Y +CG +  A +VF  +   DVV+W
Sbjct: 160 CSN---LTQGCFCHSCALEAGFAADPAVCHALIVTYGRCGSSPLARQVFSEMVRKDVVSW 216

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC----GESIHA 176
            ++I   D   C      +F  M    V PN+  L   + + +   D       G+ +HA
Sbjct: 217 TSMIKAADADECL----LLFRQMLLEGVAPNELTLAEALHSCSLAPDLPATFALGQCVHA 272

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA---HQDSVSWNALFSRFQDYES 233
              + G+E+D +VG +L++MY +   +     +F  +A     + V W A+ +       
Sbjct: 273 CARELGYETDVVVGTSLINMYAKCAALPQAEAIFHLLATNARTNCVCWTAMITANAKAGE 332

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
             Q +R++ QM L+G  PN  +FI  L ACS+   +  GK +H+ T++  L+ + +V  +
Sbjct: 333 WKQAIRLYRQMQLQGIAPNRVSFIAALSACSTPEFLATGKLVHSCTVERGLESDTMVANA 392

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEA------EMALKCFRKMRL 347
           +V MY K G  EDA   FD +  +D   ++A++ + A AGE       E AL  F  M+L
Sbjct: 393 VVSMYGKCGSTEDARKMFDGMKRRDSVTWSAMLAAIALAGELDSRARNEQALLLFASMQL 452

Query: 348 EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAV----KTGHLLDMFVSTALVAMYAKCG 403
           EG+K  + TL S LN CS    LA GR++HS  +      G  L++ +  A+V MYA+CG
Sbjct: 453 EGVKPTKVTLVSLLNCCS---DLAAGRMIHSRVLLDRRPDGGELEVALWNAVVNMYARCG 509

Query: 404 SIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           S+D A   F G+  RD  SWN MI    +H     A+  F+ M  EG  PDE+T V +L 
Sbjct: 510 SLDSAAREFHGAQARDFISWNGMITASAQHSRWSDAVAYFQEMQQEGVDPDEVTMVTLLF 569

Query: 464 ACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNA 523
           AC+H G +E+G  +F+S+ K YG++P ++H AC++D+LGR+G   E+   + +     + 
Sbjct: 570 ACNHAGFVEQGCNYFASMSKDYGLSPRLEHSACVLDMLGRSGH-VEVAQEMLKDSACSDP 628

Query: 524 LVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYV 561
           ++W +LLG+C  HG++E     + ++L++ P   S YV
Sbjct: 629 VLWTSLLGSCRVHGDLERARAASGQILDVNPASSSAYV 666



 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 145/478 (30%), Positives = 240/478 (50%), Gaps = 37/478 (7%)

Query: 15  NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVH 74
           +VVSW +L+ GY++ G   + M L   M+      + F+  ++LK   +   ++AG  +H
Sbjct: 10  DVVSWTSLIWGYSQRGQWDQAMALLGRMQQEGVAPNSFTFGSILKACKD---VEAGARIH 66

Query: 75  A--MAIRLGCAL--DKFLSCSLVDMYSKCGLADNALKVFYRIKDP--DVVAWGAII---- 124
              + +R G  L  D +++ +LV MY  CG +  A +VF  I     ++V W A++    
Sbjct: 67  RFLLQVRHGQILYHDVYVATALVGMYGSCGHSAAAREVFDAIPSATKNIVTWSAMLGTNA 126

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
           +   QQG        ++ + + S++ ++ V  +++   +       G   H+   + GF 
Sbjct: 127 SVWRQQG----MELFWSFLNDGSLRVDKVVFITVLGLCSNLTQ---GCFCHSCALEAGFA 179

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
           +D  V +AL+  Y   G      +VF  +  +D VSW ++          D+ L +F QM
Sbjct: 180 ADPAVCHALIVTYGRCGSSPLARQVFSEMVRKDVVSWTSMI----KAADADECLLLFRQM 235

Query: 245 LLKGFKPNMCTFIVILKACSSLSDV----GFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           LL+G  PN  T    L +CS   D+      G+ +HA   +   + + VVGTSL++MY K
Sbjct: 236 LLEGVAPNELTLAEALHSCSLAPDLPATFALGQCVHACARELGYETDVVVGTSLINMYAK 295

Query: 301 SGCLEDAGVAFDSLANK---DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
              L  A   F  LA     +   +TA+IT+ A+AGE + A++ +R+M+L+GI  N  + 
Sbjct: 296 CAALPQAEAIFHLLATNARTNCVCWTAMITANAKAGEWKQAIRLYRQMQLQGIAPNRVSF 355

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
            + L+ CS    LA G+L+HS  V+ G   D  V+ A+V+MY KCGS +DA  +F G   
Sbjct: 356 IAALSACSTPEFLATGKLVHSCTVERGLESDTMVANAVVSMYGKCGSTEDARKMFDGMKR 415

Query: 418 RDTASWNMMIGGYVKHG------LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
           RD+ +W+ M+      G        E+AL  F  M  EG  P ++T V +L+ CS + 
Sbjct: 416 RDSVTWSAMLAAIALAGELDSRARNEQALLLFASMQLEGVKPTKVTLVSLLNCCSDLA 473



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 131/468 (27%), Positives = 226/468 (48%), Gaps = 30/468 (6%)

Query: 115 PDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
           PDVV+W ++I    Q+G   +A  +   M++  V PN F   S+++A     D   G  I
Sbjct: 9   PDVVSWTSLIWGYSQRGQWDQAMALLGRMQQEGVAPNSFTFGSILKACK---DVEAGARI 65

Query: 175 HAVI--CKYG--FESDTLVGNALVSMYMENGRVSYGSRVFEAI--AHQDSVSWNALFSRF 228
           H  +   ++G     D  V  ALV MY   G  +    VF+AI  A ++ V+W+A+    
Sbjct: 66  HRFLLQVRHGQILYHDVYVATALVGMYGSCGHSAAAREVFDAIPSATKNIVTWSAMLGTN 125

Query: 229 QDYESPDQGLRIFYQMLLKG-FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGN 287
                  QG+ +F+  L  G  + +   FI +L  CS+L+   F    H+  ++     +
Sbjct: 126 ASVWR-QQGMELFWSFLNDGSLRVDKVVFITVLGLCSNLTQGCF---CHSCALEAGFAAD 181

Query: 288 HVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL 347
             V  +L+  Y + G    A   F  +  KD+ ++T++I    +A +A+  L  FR+M L
Sbjct: 182 PAVCHALIVTYGRCGSSPLARQVFSEMVRKDVVSWTSMI----KAADADECLLLFRQMLL 237

Query: 348 EGIKSNEFTLASCLNGCSPV----ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCG 403
           EG+  NE TLA  L+ CS      AT A G+ +H+ A + G+  D+ V T+L+ MYAKC 
Sbjct: 238 EGVAPNELTLAEALHSCSLAPDLPATFALGQCVHACARELGYETDVVVGTSLINMYAKCA 297

Query: 404 SIDDAEAVFK---GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVV 460
           ++  AEA+F     +A  +   W  MI    K G  ++A+  +R M  +G  P+ ++F+ 
Sbjct: 298 ALPQAEAIFHLLATNARTNCVCWTAMITANAKAGEWKQAIRLYRQMQLQGIAPNRVSFIA 357

Query: 461 VLSACSHMGLIEEGK-KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKL 519
            LSACS    +  GK  H  ++++  G+         ++ + G+ G   +        K 
Sbjct: 358 ALSACSTPEFLATGKLVHSCTVER--GLESDTMVANAVVSMYGKCGSTEDARKMFDGMK- 414

Query: 520 TPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
             +++ W  +L A +  G ++   ++ + LL L   M+   V P+ ++
Sbjct: 415 RRDSVTWSAMLAAIALAGELDSRARNEQALL-LFASMQLEGVKPTKVT 461



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 123/464 (26%), Positives = 223/464 (48%), Gaps = 25/464 (5%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           LA++VF  M   +VVSW +++    ++ D  + + LF  M       ++ +L+  L   +
Sbjct: 200 LARQVFSEMVRKDVVSWTSMI----KAADADECLLLFRQMLLEGVAPNELTLAEALHSCS 255

Query: 63  NSGYIKA----GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD---P 115
            +  + A    GQ VHA A  LG   D  +  SL++MY+KC     A  +F+ +      
Sbjct: 256 LAPDLPATFALGQCVHACARELGYETDVVVGTSLINMYAKCAALPQAEAIFHLLATNART 315

Query: 116 DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH 175
           + V W A+IT   + G  ++A +++  M+   + PN+    + + A +       G+ +H
Sbjct: 316 NCVCWTAMITANAKAGEWKQAIRLYRQMQLQGIAPNRVSFIAALSACSTPEFLATGKLVH 375

Query: 176 AVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFS------RFQ 229
           +   + G ESDT+V NA+VSMY + G      ++F+ +  +DSV+W+A+ +         
Sbjct: 376 SCTVERGLESDTMVANAVVSMYGKCGSTEDARKMFDGMKRRDSVTWSAMLAAIALAGELD 435

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHT-IKHSLDGNH 288
                +Q L +F  M L+G KP   T + +L  C   SD+  G+ +H+   +    DG  
Sbjct: 436 SRARNEQALLLFASMQLEGVKPTKVTLVSLLNCC---SDLAAGRMIHSRVLLDRRPDGGE 492

Query: 289 V---VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM 345
           +   +  ++V+MY + G L+ A   F     +D  ++  +IT+ AQ      A+  F++M
Sbjct: 493 LEVALWNAVVNMYARCGSLDSAAREFHGAQARDFISWNGMITASAQHSRWSDAVAYFQEM 552

Query: 346 RLEGIKSNEFTLASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404
           + EG+  +E T+ + L  C+    +  G     S++   G    +  S  ++ M  + G 
Sbjct: 553 QQEGVDPDEVTMVTLLFACNHAGFVEQGCNYFASMSKDYGLSPRLEHSACVLDMLGRSGH 612

Query: 405 IDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
           ++ A+ + K SA  D   W  ++G    HG  E+A  A   +LD
Sbjct: 613 VEVAQEMLKDSACSDPVLWTSLLGSCRVHGDLERARAASGQILD 656



 Score = 43.5 bits (101), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEE 473
           GS + D  SW  +I GY + G  ++A+     M  EG  P+  TF  +L AC  +     
Sbjct: 5   GSTIPDVVSWTSLIWGYSQRGQWDQAMALLGRMQQEGVAPNSFTFGSILKACKDVEAGAR 64

Query: 474 GKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEI-ENFITETKLTPNALVWENLLG 531
             +    ++    +   +     ++ + G  G      E F      T N + W  +LG
Sbjct: 65  IHRFLLQVRHGQILYHDVYVATALVGMYGSCGHSAAAREVFDAIPSATKNIVTWSAMLG 123


>gi|357121739|ref|XP_003562575.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 770

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 171/548 (31%), Positives = 281/548 (51%), Gaps = 12/548 (2%)

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +G +   + +H   ++ G  +D F++ SLV++Y +CG + +A  +F  + + +VV W A+
Sbjct: 91  TGSLGGAKALHGHMVKTGTIVDIFVATSLVNVYMRCGNSQDARNLFDEMPEKNVVTWTAL 150

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           IT          A ++F  M +    P+ + L  ++ A   + +   G+ +H    KYG 
Sbjct: 151 ITGYTLNSQPVLALEVFVEMLKLGRYPSDYTLGGMLSACVASHNIDLGKQVHGYTIKYGA 210

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR-FQDYESPDQGLRIFY 242
            S T +GN+L  +Y ++G +  G R F+ I  ++ ++W  + S   +D    + GL +F 
Sbjct: 211 ASITSIGNSLCRLYTKSGNLESGIRAFKRIPDKNVITWTTMISACAEDENYTELGLNLFL 270

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            ML     PN  T   ++  C +  D+  GKQ+     K     N  V  S + +Y + G
Sbjct: 271 DMLKGEVMPNEFTLTSVMSLCGTSLDMNLGKQVQGFCFKIGCATNLPVKNSTMYLYLRKG 330

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAE-----------MALKCFRKMRLEGIK 351
             E+A   F+ + +  +  + A+I+ +AQ  ++             ALK FR +    +K
Sbjct: 331 ETEEAMRLFEEMEDNSVITWNAMISGFAQIMDSAKDDLHARSRGFQALKIFRDLVRSAMK 390

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            + FT +S L+ CS +  L  G  +H+  +KTG L D+ V++ALV MY KCG I+ A   
Sbjct: 391 PDLFTFSSILSVCSTMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEYATKA 450

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F     R   +W  MI GY +HG    A++ F  M+  G  P+EITFV +LSACS+ GL+
Sbjct: 451 FVEMPTRTLVTWTSMISGYSQHGRPHDAIQLFEDMILAGAKPNEITFVSLLSACSYAGLV 510

Query: 472 EEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLG 531
           EE  ++F  ++  Y I P + H+ CMID+  R G+  +   FI      PN  +W +L+ 
Sbjct: 511 EEAMRYFDMMQNEYHIEPLMDHYGCMIDMFVRLGRLDDAYAFIKRKGFEPNEAIWSSLVA 570

Query: 532 ACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
            C  HGN+EL    A++LLEL+PK+   YV   ++  + GRW D + VR L   + +   
Sbjct: 571 GCRSHGNMELAFYAADRLLELKPKVVETYVLLLNMYISTGRWRDVARVRKLSKHEDLGIL 630

Query: 592 PSCSWIEV 599
              SWI +
Sbjct: 631 RDRSWITI 638



 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/461 (29%), Positives = 225/461 (48%), Gaps = 18/461 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F  MPE NVV+W AL+ GY  +      + +F  M  + +  S ++L  +L     
Sbjct: 132 ARNLFDEMPEKNVVTWTALITGYTLNSQPVLALEVFVEMLKLGRYPSDYTLGGMLSACVA 191

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           S  I  G+ VH   I+ G A    +  SL  +Y+K G  ++ ++ F RI D +V+ W  +
Sbjct: 192 SHNIDLGKQVHGYTIKYGAASITSIGNSLCRLYTKSGNLESGIRAFKRIPDKNVITWTTM 251

Query: 124 IT-CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I+ C + +   +    +F  M +  V PN+F LTS++     + D   G+ +     K G
Sbjct: 252 ISACAEDENYTELGLNLFLDMLKGEVMPNEFTLTSVMSLCGTSLDMNLGKQVQGFCFKIG 311

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNAL---FSRFQDYESPD---- 235
             ++  V N+ + +Y+  G      R+FE +     ++WNA+   F++  D    D    
Sbjct: 312 CATNLPVKNSTMYLYLRKGETEEAMRLFEEMEDNSVITWNAMISGFAQIMDSAKDDLHAR 371

Query: 236 ----QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
               Q L+IF  ++    KP++ TF  IL  CS++  +  G+Q+HA TIK     + VV 
Sbjct: 372 SRGFQALKIFRDLVRSAMKPDLFTFSSILSVCSTMMALEQGEQIHAQTIKTGFLSDVVVN 431

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
           ++LV+MY+K GC+E A  AF  +  + L  +T++I+ Y+Q G    A++ F  M L G K
Sbjct: 432 SALVNMYNKCGCIEYATKAFVEMPTRTLVTWTSMISGYSQHGRPHDAIQLFEDMILAGAK 491

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH---LLDMFVSTALVAMYAKCGSIDDA 408
            NE T  S L+ CS    +        +     H   L+D +    ++ M+ + G +DDA
Sbjct: 492 PNEITFVSLLSACSYAGLVEEAMRYFDMMQNEYHIEPLMDHY--GCMIDMFVRLGRLDDA 549

Query: 409 EAVFKGSALR-DTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
            A  K      + A W+ ++ G   HG  E A  A   +L+
Sbjct: 550 YAFIKRKGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLLE 590



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/431 (25%), Positives = 198/431 (45%), Gaps = 23/431 (5%)

Query: 135 EAAKIFNLMRE-SSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNAL 193
           +A +   +++E  SV+   +V   L+    ETG     +++H  + K G   D  V  +L
Sbjct: 62  DAQEAMAMLKEGQSVQSAMYV--PLLHRCIETGSLGGAKALHGHMVKTGTIVDIFVATSL 119

Query: 194 VSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
           V++YM  G       +F+ +  ++ V+W AL + +     P   L +F +ML  G  P+ 
Sbjct: 120 VNVYMRCGNSQDARNLFDEMPEKNVVTWTALITGYTLNSQPVLALEVFVEMLKLGRYPSD 179

Query: 254 CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
            T   +L AC +  ++  GKQ+H +TIK+       +G SL  +Y KSG LE    AF  
Sbjct: 180 YTLGGMLSACVASHNIDLGKQVHGYTIKYGAASITSIGNSLCRLYTKSGNLESGIRAFKR 239

Query: 314 LANKDLFAYTAIITSYAQ-AGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
           + +K++  +T +I++ A+     E+ L  F  M    +  NEFTL S ++ C     +  
Sbjct: 240 IPDKNVITWTTMISACAEDENYTELGLNLFLDMLKGEVMPNEFTLTSVMSLCGTSLDMNL 299

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
           G+ +     K G   ++ V  + + +Y + G  ++A  +F+        +WN MI G+ +
Sbjct: 300 GKQVQGFCFKIGCATNLPVKNSTMYLYLRKGETEEAMRLFEEMEDNSVITWNAMISGFAQ 359

Query: 433 -----------HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSS 480
                         G +AL+ FR ++     PD  TF  +LS CS M  +E+G++ H  +
Sbjct: 360 IMDSAKDDLHARSRGFQALKIFRDLVRSAMKPDLFTFSSILSVCSTMMALEQGEQIHAQT 419

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           IK   G    +   + ++++  + G          E   T   + W +++   S HG   
Sbjct: 420 IKT--GFLSDVVVNSALVNMYNKCGCIEYATKAFVEMP-TRTLVTWTSMISGYSQHGR-- 474

Query: 541 LDEKDAEKLLE 551
               DA +L E
Sbjct: 475 --PHDAIQLFE 483



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 166/324 (51%), Gaps = 21/324 (6%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKV-MHLFCSMKDMEKKFSKFSLSTVLK 59
           +E   R FK +P+ NV++W  +++  AE  +  ++ ++LF  M   E   ++F+L++V+ 
Sbjct: 230 LESGIRAFKRIPDKNVITWTTMISACAEDENYTELGLNLFLDMLKGEVMPNEFTLTSVMS 289

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
               S  +  G+ V     ++GCA +  +  S + +Y + G  + A+++F  ++D  V+ 
Sbjct: 290 LCGTSLDMNLGKQVQGFCFKIGCATNLPVKNSTMYLYLRKGETEEAMRLFEEMEDNSVIT 349

Query: 120 WGAIITCLDQ-----------QGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ 168
           W A+I+   Q           +    +A KIF  +  S++KP+ F  +S++   +     
Sbjct: 350 WNAMISGFAQIMDSAKDDLHARSRGFQALKIFRDLVRSAMKPDLFTFSSILSVCSTMMAL 409

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228
             GE IHA   K GF SD +V +ALV+MY + G + Y ++ F  +  +  V+W ++ S +
Sbjct: 410 EQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEYATKAFVEMPTRTLVTWTSMISGY 469

Query: 229 QDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVG-----FGKQLHAHTIKHS 283
             +  P   +++F  M+L G KPN  TF+ +L ACS    V      F    + + I+  
Sbjct: 470 SQHGRPHDAIQLFEDMILAGAKPNEITFVSLLSACSYAGLVEEAMRYFDMMQNEYHIEPL 529

Query: 284 LDGNHVVGTSLVDMYDKSGCLEDA 307
           +D  H     ++DM+ + G L+DA
Sbjct: 530 MD--HY--GCMIDMFVRLGRLDDA 549



 Score = 42.7 bits (99), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 28/135 (20%), Positives = 61/135 (45%), Gaps = 6/135 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A + F  MP   +V+W ++++GY++ G     + LF  M     K ++ +  ++L  
Sbjct: 444 IEYATKAFVEMPTRTLVTWTSMISGYSQHGRPHDAIQLFEDMILAGAKPNEITFVSLLSA 503

Query: 61  FANSGYIKAGQVVHAM---AIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPD 116
            + +G ++       M      +   +D +  C ++DM+ + G  D+A     R   +P+
Sbjct: 504 CSYAGLVEEAMRYFDMMQNEYHIEPLMDHY-GC-MIDMFVRLGRLDDAYAFIKRKGFEPN 561

Query: 117 VVAWGAIITCLDQQG 131
              W +++      G
Sbjct: 562 EAIWSSLVAGCRSHG 576


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 178/556 (32%), Positives = 285/556 (51%), Gaps = 4/556 (0%)

Query: 49  FSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGC-ALDKFLSCSLVDMYSKCGLADNALK 107
           F      T+L+   NS  +     +HA     G    + +L+  L   Y+ CG    A  
Sbjct: 20  FDSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQH 79

Query: 108 VFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD 167
           +F +I   +   W ++I           A  ++  M     KP+ F    +++A  +   
Sbjct: 80  IFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLL 139

Query: 168 QRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR 227
           +  G  +HA++   G E D  VGN+++SMY + G V     VF+ +  +D  SWN + S 
Sbjct: 140 REMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSG 199

Query: 228 FQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDG- 286
           F           +F  M   GF  +  T + +L AC  + D+  GK++H + +++   G 
Sbjct: 200 FVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGR 259

Query: 287 --NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRK 344
             N  +  S++DMY     +  A   F+ L  KD+ ++ ++I+ Y + G+A  AL+ F +
Sbjct: 260 VCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGR 319

Query: 345 MRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS 404
           M + G   +E T+ S L  C+ ++ L  G  + S  VK G+++++ V TAL+ MYA CGS
Sbjct: 320 MVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGS 379

Query: 405 IDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
           +  A  VF     ++  +  +M+ G+  HG G +A+  F  ML +G  PDE  F  VLSA
Sbjct: 380 LVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSA 439

Query: 465 CSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNAL 524
           CSH GL++EGK+ F  + + Y + P   H++C++D+LGRAG   E    I   KL PN  
Sbjct: 440 CSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNED 499

Query: 525 VWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLS 584
           VW  LL AC  H N++L    A+KL EL P   S YV  S+I A + RW D   VRAL++
Sbjct: 500 VWTALLSACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAAERRWEDVENVRALVA 559

Query: 585 SQGIKKEPSCSWIEVD 600
            + ++K PS S++E++
Sbjct: 560 KRRLRKPPSYSFVELN 575



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 128/523 (24%), Positives = 234/523 (44%), Gaps = 54/523 (10%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A+ +F  +   N   WN+++ GYA +    + + L+  M    +K   F+   VLK 
Sbjct: 74  MPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKA 133

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +    + G+ VHA+ +  G   D ++  S++ MY K G  + A  VF R+   D+ +W
Sbjct: 134 CGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSW 193

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +++   + G  + A ++F  MR      ++  L +L+ A  +  D + G+ IH  + +
Sbjct: 194 NTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVR 253

Query: 181 YGFESDTLVG---NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
            G       G   N+++ MY     VS   ++FE +  +D VSWN+L S ++      Q 
Sbjct: 254 NGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQA 313

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           L +F +M++ G  P+  T I +L AC+ +S +  G  + ++ +K     N VVGT+L+ M
Sbjct: 314 LELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGM 373

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y   G L  A   FD +  K+L A T ++T +   G    A+  F +M  +G+  +E   
Sbjct: 374 YANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIF 433

Query: 358 ASCLNGCSPVATLANGRLL-------HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
            + L+ CS    +  G+ +       +S+  +  H       + LV +  + G +D+A A
Sbjct: 434 TAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHY------SCLVDLLGRAGYLDEAYA 487

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           V +   L+                                  P+E  +  +LSAC    L
Sbjct: 488 VIENMKLK----------------------------------PNEDVWTALLSACR---L 510

Query: 471 IEEGKKHFSSIKKIYGITPT-IKHFACMIDILGRAGKFTEIEN 512
               K    S +K++ + P  +  + C+ +I     ++ ++EN
Sbjct: 511 HRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAAERRWEDVEN 553


>gi|357494773|ref|XP_003617675.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519010|gb|AET00634.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  309 bits (791), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 173/592 (29%), Positives = 309/592 (52%), Gaps = 12/592 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A +VF  +P  +VV+W AL+ GY ++G+ +  +     M  +     K +  T+  G
Sbjct: 161 MNDAVKVFDEIPVRDVVAWTALVIGYVQNGESEMGLECISEMYRVGDDSQKPNARTLEGG 220

Query: 61  F---ANSGYIKAGQVVHAMAIR--LGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP 115
           F    N G + +G+ +H + ++  +GC LD  +  S++ MY KCG+   A + F  + + 
Sbjct: 221 FLACGNLGDLVSGRCLHGLVVKNGIGCLLD--IQSSVLSMYCKCGVPREAYQSFSEVINK 278

Query: 116 DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH 175
           D+++W ++I    + G   +  + F  M E+ V P+  V+  ++     + D   G++ H
Sbjct: 279 DLLSWTSMIRVYARFGMMSDCVRFFWEMLENQVCPDGMVIGCILSGFGNSVDVYGGKAFH 338

Query: 176 AVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS-WNALFSRFQDYESP 234
            +I +  +  D +V N+L+SMY + G +S+  R+F+    Q S+  WN +   +      
Sbjct: 339 GLIIRRHYAPDEMVDNSLLSMYCKFGMLSFAERLFQR--SQGSIEYWNFMIVGYGRIGKN 396

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
            + +++F +M   G +      +  + +C  L ++  G+ +H + IK  +D    V  SL
Sbjct: 397 VKCIQLFREMQYLGIRSESVGIVSAIASCGQLGEINLGRSIHCNVIKGFVDETISVTNSL 456

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           ++MY K   +  +   F+  + +D+  + A+I+++      E A+  F  M +E    N 
Sbjct: 457 IEMYGKCDKMNVSWRIFNR-SERDVILWNALISAHIHVKHYEEAISLFDIMIMEDQNPNT 515

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            TL   L+ CS +A L  G  LH    + G  L++ + TALV MYAKCG ++ +  VF  
Sbjct: 516 ATLVVVLSACSHLAFLEKGERLHRYINEKGFKLNLPLGTALVDMYAKCGQLEKSREVFDS 575

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
              +D   WN MI GY  +G  E A+E F +M +    P+EITF+ +LSAC+H GL+EEG
Sbjct: 576 MMEKDVICWNAMISGYGMNGYAESAIEIFNLMEESNVKPNEITFLSLLSACAHAGLVEEG 635

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
           K  F+ ++  Y + P +KH+ CM+D+LGR+    E E  +    + P+  VW  LL AC 
Sbjct: 636 KNVFAKMQS-YSVKPNLKHYTCMVDLLGRSCNLEEAEELVLSMPIPPDGGVWGALLSACK 694

Query: 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQ 586
            H  IE+  +  +  ++ EP+ +  Y+  +++ ++ GRW++   VR  +  +
Sbjct: 695 THNQIEMGIRIGKNAIDSEPENDGYYIMVANMYSSIGRWDEAENVRRTMKDR 746



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 113/463 (24%), Positives = 213/463 (46%), Gaps = 8/463 (1%)

Query: 74  HAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCC 133
           HA+ +  G + + F++  L+ +Y       ++  +F+ +   D   W + +  L  +   
Sbjct: 31  HAVTVTTGNSTNPFIAAKLISLYDTLNHPTSSSTLFHSLPFKDTFLWNSFLKTLFSRSLY 90

Query: 134 QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG-FESDTLVGNA 192
            +    ++LMR  +V PN F    +  +       R G ++HA+ CK G F  ++ VG++
Sbjct: 91  PQFLSFYSLMRSENVLPNHFTFPMVASSYAHFMMIRSGMNLHALACKVGFFPENSAVGSS 150

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKG---F 249
            VS+Y     ++   +VF+ I  +D V+W AL   +      + GL    +M   G    
Sbjct: 151 FVSLYSRCDEMNDAVKVFDEIPVRDVVAWTALVIGYVQNGESEMGLECISEMYRVGDDSQ 210

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
           KPN  T      AC +L D+  G+ LH   +K+ +     + +S++ MY K G   +A  
Sbjct: 211 KPNARTLEGGFLACGNLGDLVSGRCLHGLVVKNGIGCLLDIQSSVLSMYCKCGVPREAYQ 270

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVAT 369
           +F  + NKDL ++T++I  YA+ G     ++ F +M    +  +   +   L+G      
Sbjct: 271 SFSEVINKDLLSWTSMIRVYARFGMMSDCVRFFWEMLENQVCPDGMVIGCILSGFGNSVD 330

Query: 370 LANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGG 429
           +  G+  H + ++  +  D  V  +L++MY K G +  AE +F+ S       WN MI G
Sbjct: 331 VYGGKAFHGLIIRRHYAPDEMVDNSLLSMYCKFGMLSFAERLFQRSQ-GSIEYWNFMIVG 389

Query: 430 YVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITP 489
           Y + G   K ++ FR M   G   + +  V  +++C  +G I  G+    ++ K + +  
Sbjct: 390 YGRIGKNVKCIQLFREMQYLGIRSESVGIVSAIASCGQLGEINLGRSIHCNVIKGF-VDE 448

Query: 490 TIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGA 532
           TI     +I++ G+  K          ++   + ++W  L+ A
Sbjct: 449 TISVTNSLIEMYGKCDKMNVSWRIFNRSE--RDVILWNALISA 489



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 50/108 (46%)

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           + TL +    H++ V TG+  + F++  L+++Y        +  +F     +DT  WN  
Sbjct: 21  ITTLQSLLPFHAVTVTTGNSTNPFIAAKLISLYDTLNHPTSSSTLFHSLPFKDTFLWNSF 80

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
           +       L  + L  + +M  E  +P+  TF +V S+ +H  +I  G
Sbjct: 81  LKTLFSRSLYPQFLSFYSLMRSENVLPNHFTFPMVASSYAHFMMIRSG 128


>gi|115467784|ref|NP_001057491.1| Os06g0314100 [Oryza sativa Japonica Group]
 gi|54291635|dbj|BAD62428.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113595531|dbj|BAF19405.1| Os06g0314100 [Oryza sativa Japonica Group]
 gi|125597005|gb|EAZ36785.1| hypothetical protein OsJ_21122 [Oryza sativa Japonica Group]
          Length = 992

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 175/591 (29%), Positives = 321/591 (54%), Gaps = 3/591 (0%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           +F S+ E + + WN+L++GY  +     VM     M+         ++ +V+    ++  
Sbjct: 401 LFSSVTEKSQLLWNSLISGYLVNNKWNMVMGSVRRMQIEGVDPDALTVISVISKCRHTED 460

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +  G+ +HA A+R    L++ +  +L+ MY+ CG      K+F+ ++   +++W  II+ 
Sbjct: 461 LHVGKSIHAYAVRSRLELNESVMNALLAMYADCGQLSICCKLFHTMEVRTLISWNTIISG 520

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             + G      + F  MR + ++ +   L +L+ + +   D   GES+H++  + G   D
Sbjct: 521 FAENGDSVACLRFFCQMRLADMQFDLVTLIALISSLSAIEDITVGESVHSLAIRSGCNLD 580

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             V NAL++MY   G +  G ++F++++  +++S+NAL + ++     ++ L +FY M+ 
Sbjct: 581 VSVANALITMYTNCGIIQAGEKLFDSLSSVNTISYNALMTGYRKNNLFEEILPLFYHMIK 640

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
              KPN+ T + +L  C S      GK +H++ I++       + TS + MY +   LE 
Sbjct: 641 NDQKPNIITLLNLLPICHSQLQ---GKTVHSYAIRNFSKLETSLFTSAICMYSRFNNLEY 697

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
               F  +  ++   + AI+++  Q  +A +A   FR+++   +K++  T+ + ++ CS 
Sbjct: 698 CHNLFCLVGERNNIVWNAILSACVQCKQAGVAFDYFRQIQFLNVKTDAVTMLALISACSQ 757

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           +        + +IA++ G    + V  AL+ M+++CGSI  A  +F  S  +D+ SW+ M
Sbjct: 758 LGKADLAECVTAIALQKGFDGTIIVLNALIDMHSRCGSISFARKIFDISMEKDSVSWSTM 817

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           I  Y  HG G  AL+ F MM+  G  PD+ITFV VLSACS  G +E+G+  F S+   +G
Sbjct: 818 INAYSMHGDGGSALDLFLMMVSSGIKPDDITFVSVLSACSRSGFLEQGRTLFRSMLADHG 877

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDA 546
           ITP ++H+ACM+D+LGR G   E  + +T     P+  + E+LLGAC +HGN +L E   
Sbjct: 878 ITPRMEHYACMVDLLGRTGHLDEAYDIVTTMPFRPSKSLLESLLGACRFHGNSKLGESVG 937

Query: 547 EKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           + L E +     +YV  S+I A+ G+W+D+  +R+ + ++G+ K+   S I
Sbjct: 938 KILTESDHGNPRSYVMLSNIYASAGKWSDYERLRSDMEAKGLIKDVGVSLI 988



 Score =  214 bits (546), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 142/534 (26%), Positives = 267/534 (50%), Gaps = 7/534 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++L++RVF  M   +++SWNA+++GY+ +G   +       M+    + +  SL  ++  
Sbjct: 193 VDLSRRVFDGMKSRDLISWNAMISGYSLNGCLLEAAEALKQMQQDGFRPNASSLVGIVSM 252

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +  G   AG  +HA A++ G   D+ L+ + + MY+  G   ++L +F++    ++V+ 
Sbjct: 253 VSGLGVRDAGDPLHAFALKSGVLGDESLTPAFISMYAAFGHLSSSLSLFHQSLVDNLVSC 312

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I+   Q G  ++A  +F LMR   + PN   + S++   +       GES+H ++ K
Sbjct: 313 NSMISVCMQHGAWEKAFGVFRLMRCKGLVPNLVTVVSILPCCSNFFGINHGESVHGMVIK 372

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +G      V +ALVSMY + G +     +F ++  +  + WN+L S +      +  +  
Sbjct: 373 FGLAEQVSVVSALVSMYSKLGDLDSAVFLFSSVTEKSQLLWNSLISGYLVNNKWNMVMGS 432

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
             +M ++G  P+  T I ++  C    D+  GK +HA+ ++  L+ N  V  +L+ MY  
Sbjct: 433 VRRMQIEGVDPDALTVISVISKCRHTEDLHVGKSIHAYAVRSRLELNESVMNALLAMYAD 492

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L      F ++  + L ++  II+ +A+ G++   L+ F +MRL  ++ +  TL + 
Sbjct: 493 CGQLSICCKLFHTMEVRTLISWNTIISGFAENGDSVACLRFFCQMRLADMQFDLVTLIAL 552

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           ++  S +  +  G  +HS+A+++G  LD+ V+ AL+ MY  CG I   E +F   +  +T
Sbjct: 553 ISSLSAIEDITVGESVHSLAIRSGCNLDVSVANALITMYTNCGIIQAGEKLFDSLSSVNT 612

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFS 479
            S+N ++ GY K+ L E+ L  F  M+     P+ IT + +L  C H  L  +GK  H  
Sbjct: 613 ISYNALMTGYRKNNLFEEILPLFYHMIKNDQKPNIITLLNLLPIC-HSQL--QGKTVHSY 669

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           +I+    +  ++  F   I +  R        N         N +VW  +L AC
Sbjct: 670 AIRNFSKLETSL--FTSAICMYSRFNNLEYCHNLFCLVG-ERNNIVWNAILSAC 720



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 120/425 (28%), Positives = 206/425 (48%)

Query: 51  KFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFY 110
            F+   V++  A    ++ G+ VH   +R G   +  +  +L+DMY+K G  D + +VF 
Sbjct: 142 NFTFPPVIRACAAVSCLRLGKEVHCRVVRTGHGGNVGVQTALLDMYAKSGQVDLSRRVFD 201

Query: 111 RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC 170
            +K  D+++W A+I+     GC  EAA+    M++   +PN   L  +V   +  G +  
Sbjct: 202 GMKSRDLISWNAMISGYSLNGCLLEAAEALKQMQQDGFRPNASSLVGIVSMVSGLGVRDA 261

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
           G+ +HA   K G   D  +  A +SMY   G +S    +F      + VS N++ S    
Sbjct: 262 GDPLHAFALKSGVLGDESLTPAFISMYAAFGHLSSSLSLFHQSLVDNLVSCNSMISVCMQ 321

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
           + + ++   +F  M  KG  PN+ T + IL  CS+   +  G+ +H   IK  L     V
Sbjct: 322 HGAWEKAFGVFRLMRCKGLVPNLVTVVSILPCCSNFFGINHGESVHGMVIKFGLAEQVSV 381

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
            ++LV MY K G L+ A   F S+  K    + ++I+ Y    +  M +   R+M++EG+
Sbjct: 382 VSALVSMYSKLGDLDSAVFLFSSVTEKSQLLWNSLISGYLVNNKWNMVMGSVRRMQIEGV 441

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
             +  T+ S ++ C     L  G+ +H+ AV++   L+  V  AL+AMYA CG +     
Sbjct: 442 DPDALTVISVISKCRHTEDLHVGKSIHAYAVRSRLELNESVMNALLAMYADCGQLSICCK 501

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           +F    +R   SWN +I G+ ++G     L  F  M       D +T + ++S+ S +  
Sbjct: 502 LFHTMEVRTLISWNTIISGFAENGDSVACLRFFCQMRLADMQFDLVTLIALISSLSAIED 561

Query: 471 IEEGK 475
           I  G+
Sbjct: 562 ITVGE 566



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 168/368 (45%), Gaps = 5/368 (1%)

Query: 109 FYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRE-SSVKPNQFVLTSLVRATTETGD 167
           FYR +  +V      + C    G  +E   +  L RE  +   + F    ++RA      
Sbjct: 102 FYRGR-AEVYDLNIAVRCFSDHGFHRE---LLGLYREVCAFGSDNFTFPPVIRACAAVSC 157

Query: 168 QRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR 227
            R G+ +H  + + G   +  V  AL+ MY ++G+V    RVF+ +  +D +SWNA+ S 
Sbjct: 158 LRLGKEVHCRVVRTGHGGNVGVQTALLDMYAKSGQVDLSRRVFDGMKSRDLISWNAMISG 217

Query: 228 FQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGN 287
           +       +      QM   GF+PN  + + I+   S L     G  LHA  +K  + G+
Sbjct: 218 YSLNGCLLEAAEALKQMQQDGFRPNASSLVGIVSMVSGLGVRDAGDPLHAFALKSGVLGD 277

Query: 288 HVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL 347
             +  + + MY   G L  +   F      +L +  ++I+   Q G  E A   FR MR 
Sbjct: 278 ESLTPAFISMYAAFGHLSSSLSLFHQSLVDNLVSCNSMISVCMQHGAWEKAFGVFRLMRC 337

Query: 348 EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
           +G+  N  T+ S L  CS    + +G  +H + +K G    + V +ALV+MY+K G +D 
Sbjct: 338 KGLVPNLVTVVSILPCCSNFFGINHGESVHGMVIKFGLAEQVSVVSALVSMYSKLGDLDS 397

Query: 408 AEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
           A  +F     +    WN +I GY+ +      + + R M  EG  PD +T + V+S C H
Sbjct: 398 AVFLFSSVTEKSQLLWNSLISGYLVNNKWNMVMGSVRRMQIEGVDPDALTVISVISKCRH 457

Query: 468 MGLIEEGK 475
              +  GK
Sbjct: 458 TEDLHVGK 465


>gi|225438593|ref|XP_002276456.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial [Vitis vinifera]
 gi|296082485|emb|CBI21490.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 177/589 (30%), Positives = 293/589 (49%), Gaps = 2/589 (0%)

Query: 15  NVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVH 74
            V  WN+ +      G   K + LF  MK    + +  +  +V K  +    +K  Q+VH
Sbjct: 18  TVAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVH 77

Query: 75  AMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQ 134
              ++     D F+  S+VDMY KC     A  +F R+   DV +W ++I    Q G   
Sbjct: 78  THVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPKRDVASWNSMILGFAQLGFVD 137

Query: 135 EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALV 194
               +F  M    ++ +   +  L  +     D +  ESIH+   K G ++D  V N  +
Sbjct: 138 RVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTDVSVSNTWI 197

Query: 195 SMYMENGRVSYGSRVFEAI--AHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           + Y + G       VF+ I    +  VSWN++ + +  +E   + +  F +ML  GF+ +
Sbjct: 198 AAYAKCGEFGLAETVFDGIDKGLKTGVSWNSMIAGYAHFEQCSKAVGFFKKMLCGGFRAD 257

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
           + T + +L +C     +  GK +HAH I+   D +  V  +L+ MY K G +  A   FD
Sbjct: 258 LSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFD 317

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
           ++  K   ++TA+I  YA+ G+ + A+  F  M   G K +  T+ S ++GC     L  
Sbjct: 318 NMLGKTRVSWTAMIAGYAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALEL 377

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
           G+ + + A   G   ++ V  AL+ +YAKCGS+D+A  +F     +   SW  +I G   
Sbjct: 378 GKWIDTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTMPEKSLVSWTTLIAGCAL 437

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK 492
           +G  ++AL  F  M++ G  P+ ITF+ VL AC+H G +E+G + F+ + K+Y I P + 
Sbjct: 438 NGEFKEALGLFFQMVELGLKPNHITFLAVLQACNHAGFLEKGWECFNLMTKVYKINPGLD 497

Query: 493 HFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLEL 552
           H++CM D+LGR G+  E   FI      P+  +W  LL AC  H N+ + E  A  L EL
Sbjct: 498 HYSCMADLLGRKGRLKEAFEFIQNMPFKPDVGIWSVLLSACKIHQNVVIGECVAYHLFEL 557

Query: 553 EPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           EP+    YV  ++I A+ G+W+  + +R ++      K P  S ++V+G
Sbjct: 558 EPQTAVPYVQMANIYASAGKWDRVAAIRTMMKCNKAMKSPGKSLVQVNG 606



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 175/373 (46%), Gaps = 2/373 (0%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
            A  +F  MP+ +V SWN+++ G+A+ G   +V+ LFC M     +    ++  +     
Sbjct: 107 FAYNLFSRMPKRDVASWNSMILGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSAL 166

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKD--PDVVAW 120
           +   +K  + +H+  I++G   D  +S + +  Y+KCG    A  VF  I       V+W
Sbjct: 167 SLKDLKMLESIHSFGIKIGIDTDVSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTGVSW 226

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I        C +A   F  M     + +   + SL+ +  +      G+ IHA   +
Sbjct: 227 NSMIAGYAHFEQCSKAVGFFKKMLCGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHGIQ 286

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G +SD  V N L+SMY + G +     +F+ +  +  VSW A+ + + +    D+ + +
Sbjct: 287 VGCDSDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGYAEKGDLDEAMTL 346

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  M   G KP++ T I ++  C     +  GK +  +   + L  N +V  +L+D+Y K
Sbjct: 347 FSAMEAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYATANGLKDNLMVCNALIDVYAK 406

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G +++A   F ++  K L ++T +I   A  GE + AL  F +M   G+K N  T  + 
Sbjct: 407 CGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGLKPNHITFLAV 466

Query: 361 LNGCSPVATLANG 373
           L  C+    L  G
Sbjct: 467 LQACNHAGFLEKG 479



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 66/129 (51%), Gaps = 6/129 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A+ +F +MPE ++VSW  L+ G A +G+ ++ + LF  M ++  K +  +   VL+ 
Sbjct: 410 MDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGLKPNHITFLAVLQA 469

Query: 61  FANSGYIKAGQVVHAM---AIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPD 116
             ++G+++ G     +     ++   LD + SC + D+  + G    A +    +   PD
Sbjct: 470 CNHAGFLEKGWECFNLMTKVYKINPGLDHY-SC-MADLLGRKGRLKEAFEFIQNMPFKPD 527

Query: 117 VVAWGAIIT 125
           V  W  +++
Sbjct: 528 VGIWSVLLS 536



 Score = 40.4 bits (93), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 25/54 (46%)

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
           S L   A WN  I   V  G   KAL  FR M   G  P+ +TF  V  ACS +
Sbjct: 14  SNLWTVAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKL 67


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 176/529 (33%), Positives = 278/529 (52%), Gaps = 1/529 (0%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           +HA+ I  G       +  L+  Y++ G  ++A +VF +     V AW A+I    ++G 
Sbjct: 26  IHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGA 85

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
             EA  +++ M    V+P+    T +++A T + D R GE         G+  D  VG A
Sbjct: 86  MFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAA 145

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           ++++Y + G++    RVF+ +  +D V W  + +         + + I+ QM  K  + +
Sbjct: 146 VLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGD 205

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
               + +++AC++L     G  +H + I+  +  + +V TSLVDMY K+G LE A   F 
Sbjct: 206 GVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFR 265

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
            +  K++ +++A+I+ +AQ G A  AL+    M+  G K +  +L S L  CS V  L  
Sbjct: 266 RMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKL 325

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
           G+ +H   V+  H  D   STA++ MY+KCGS+  A  VF   + RD+ SWN +I  Y  
Sbjct: 326 GKSVHGYIVRRLHF-DCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGI 384

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK 492
           HG GE+AL  F  M +    PD  TF  +LSA SH GL+E+G+  FS +   Y I P+ K
Sbjct: 385 HGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEK 444

Query: 493 HFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLEL 552
           H+ACM+D+L RAG+  E +  I      P   +W  LL  C  HG   + E  A+K+LEL
Sbjct: 445 HYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLEL 504

Query: 553 EPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
            P     Y   S+  AT  RW++ + VR ++   G+KK P  S +EV+G
Sbjct: 505 NPDDPGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYSVMEVNG 553



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 129/444 (29%), Positives = 224/444 (50%), Gaps = 6/444 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A++VF   P+  V +WNA++  Y+  G   + + L+  M     +    + + VLK 
Sbjct: 55  IESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKA 114

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              S  +++G+     A+  G   D F+  +++++Y+KCG  D A++VF ++   D+V W
Sbjct: 115 CTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCW 174

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +IT L Q G  +EA  I+  M +  V+ +  V+  L++A T  G  + G SIH  + +
Sbjct: 175 TTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIR 234

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
                D +V  +LV MY +NG +   S VF  + +++ +SW+AL S F         L++
Sbjct: 235 KDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQL 294

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
              M   G+KP+  + + +L ACS +  +  GK +H + ++  L  + V  T+++DMY K
Sbjct: 295 VVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRR-LHFDCVSSTAVIDMYSK 353

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L  A   FD ++ +D  ++ AII SY   G  E AL  F +MR   +K +  T AS 
Sbjct: 354 CGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASL 413

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA-LVAMYAKCGSIDDAEAVFKGSALRD 419
           L+  S    +  GR   SI V    +       A +V + ++ G +++A+ + +      
Sbjct: 414 LSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEP 473

Query: 420 -TASWNMMIGGYVKHG---LGEKA 439
             A W  ++ G + HG   +GE A
Sbjct: 474 GIAIWVALLSGCLNHGKFLIGEMA 497



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 124/265 (46%), Gaps = 4/265 (1%)

Query: 274 QLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAG 333
           ++HA  I   + G+      L+  Y + G +E A   FD      + A+ A+I +Y++ G
Sbjct: 25  KIHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRG 84

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST 393
               AL  + +M  EG++ +  T    L  C+    L +G      AV  G+  D+FV  
Sbjct: 85  AMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGA 144

Query: 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP 453
           A++ +YAKCG +D+A  VF     RD   W  MI G  ++G   +A++ +R M  +    
Sbjct: 145 AVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEG 204

Query: 454 DEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIEN 512
           D +  + ++ AC+ +G  + G   H   I+K   +   ++    ++D+  + G   E+ +
Sbjct: 205 DGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQ--TSLVDMYAKNGHL-ELAS 261

Query: 513 FITETKLTPNALVWENLLGACSWHG 537
            +    L  N + W  L+   + +G
Sbjct: 262 CVFRRMLYKNVISWSALISGFAQNG 286


>gi|225438217|ref|XP_002263704.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49740-like [Vitis vinifera]
          Length = 729

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 183/597 (30%), Positives = 305/597 (51%), Gaps = 10/597 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A  +F   P +  V WNA++ G AE+   +  ++LF  M  +  +  K++ ++VL    +
Sbjct: 138 ACHLFNQTPRMIPVVWNAIITGCAENKHTEIALNLFREMHQLGVRHDKYTFASVLS-LCS 196

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP--DVVAWG 121
              +  G+ VH + I+ G  +   +  +L+ MY   G   +A +VF   +    D + + 
Sbjct: 197 LELLDFGREVHTLVIKTGFLVRASVINALLTMYFNSGKVADAYEVFEEAESTVHDDITFN 256

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
            +I  L   G  +EA  +F  M+E+ ++P +    S++ + +     R    +HA   K 
Sbjct: 257 VMIGGLASVGRDEEALIMFKEMQEACLRPTELTFVSVMSSCSSA---RVSHQVHAQAIKM 313

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           GFE+ T V NA ++MY   G +     VF+ +  +D +SWN +   +         +  F
Sbjct: 314 GFEACTPVSNAAMTMYSSCGNLHAVHMVFDRLEEKDLISWNIIIMNYAQGNFYRLAILAF 373

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            QM   G +P+  T   +L +  SL  V   K   A   K+ L+    V  +LV  + K 
Sbjct: 374 LQMQRAGIEPDEFTIGSLLASSESLEIV---KMFQALVSKNGLNSKIEVSNALVSAFSKH 430

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G +E A   F+++++ +L ++  II+ +   G     L+ F ++ +  +K N +TL+  L
Sbjct: 431 GQIEQAYQVFNNMSSPNLISWNTIISGFLFNGFTLQGLEQFYELLMSTLKPNAYTLSIVL 490

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           + C+ ++ L +G+ +H   +++G      +  AL+ MYAKCG +D +  +F     RD  
Sbjct: 491 SICASISALRHGKQIHGYILRSGVFSVTSLGNALITMYAKCGDLDWSLRIFNVMNGRDIV 550

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYV-PDEITFVVVLSACSHMGLIEEGKKHFSS 480
           SWN MI  Y +HG G++A+  F+ M D G V PD+ TF  VLSACSH GL+++G + F+S
Sbjct: 551 SWNAMISAYAQHGKGKEAVHFFKAMQDSGGVKPDQATFTAVLSACSHAGLVDDGTRIFNS 610

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           +   YG  P   H +C++D+LGRAG   E E  I    L   + +W  L  AC+ HGN+ 
Sbjct: 611 MVNDYGFEPGADHLSCIVDLLGRAGYLEEAERLINSKHLKIVSSIWWTLFSACAAHGNLR 670

Query: 541 LDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           L    A  LLE+E    + YV  S+I A  G+W + +  R L+    + K+P CSWI
Sbjct: 671 LGRIVAGFLLEIEQNDPAVYVLLSNIYAAAGQWEEAANTRDLMQKTRVAKQPGCSWI 727



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 131/497 (26%), Positives = 222/497 (44%), Gaps = 45/497 (9%)

Query: 16  VVSWNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLKGFANSGYIKAGQVVH 74
           ++  N LL     S      + LF  +      K   F+LS+ L   AN  Y  +G  +H
Sbjct: 17  LIKINQLLAELTRSHHNSASVQLFVQIHSSNYLKPDHFTLSSTLTACANLRYAASGNQLH 76

Query: 75  AMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV----------------- 117
           A +I+ G      +  +L+  Y+K     +  +VF  I++PDV                 
Sbjct: 77  AYSIQTGLKAYTHVGNTLLSFYAKSKDLVSVQRVFNEIENPDVYSWTTLLSACTKLGQIG 136

Query: 118 --------------VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVR-AT 162
                         V W AIIT   +    + A  +F  M +  V+ +++   S++   +
Sbjct: 137 YACHLFNQTPRMIPVVWNAIITGCAENKHTEIALNLFREMHQLGVRHDKYTFASVLSLCS 196

Query: 163 TETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF---EAIAHQDSV 219
            E  D   G  +H ++ K GF     V NAL++MY  +G+V+    VF   E+  H D +
Sbjct: 197 LELLD--FGREVHTLVIKTGFLVRASVINALLTMYFNSGKVADAYEVFEEAESTVHDD-I 253

Query: 220 SWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHT 279
           ++N +          ++ L +F +M     +P   TF+ ++ +CSS        Q+HA  
Sbjct: 254 TFNVMIGGLASVGRDEEALIMFKEMQEACLRPTELTFVSVMSSCSS---ARVSHQVHAQA 310

Query: 280 IKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMAL 339
           IK   +    V  + + MY   G L    + FD L  KDL ++  II +YAQ     +A+
Sbjct: 311 IKMGFEACTPVSNAAMTMYSSCGNLHAVHMVFDRLEEKDLISWNIIIMNYAQGNFYRLAI 370

Query: 340 KCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMY 399
             F +M+  GI+ +EFT+ S L     +  +   ++  ++  K G    + VS ALV+ +
Sbjct: 371 LAFLQMQRAGIEPDEFTIGSLLASSESLEIV---KMFQALVSKNGLNSKIEVSNALVSAF 427

Query: 400 AKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFV 459
           +K G I+ A  VF   +  +  SWN +I G++ +G   + LE F  +L     P+  T  
Sbjct: 428 SKHGQIEQAYQVFNNMSSPNLISWNTIISGFLFNGFTLQGLEQFYELLMSTLKPNAYTLS 487

Query: 460 VVLSACSHMGLIEEGKK 476
           +VLS C+ +  +  GK+
Sbjct: 488 IVLSICASISALRHGKQ 504



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 138/287 (48%), Gaps = 35/287 (12%)

Query: 214 AHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGF-KPNMCTFIVILKACSSLSDVGFG 272
           A +  +  N L +           +++F Q+    + KP+  T    L AC++L     G
Sbjct: 13  AAEQLIKINQLLAELTRSHHNSASVQLFVQIHSSNYLKPDHFTLSSTLTACANLRYAASG 72

Query: 273 KQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYT--------- 323
            QLHA++I+  L     VG +L+  Y KS  L      F+ + N D++++T         
Sbjct: 73  NQLHAYSIQTGLKAYTHVGNTLLSFYAKSKDLVSVQRVFNEIENPDVYSWTTLLSACTKL 132

Query: 324 ----------------------AIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
                                 AIIT  A+    E+AL  FR+M   G++ +++T AS L
Sbjct: 133 GQIGYACHLFNQTPRMIPVVWNAIITGCAENKHTEIALNLFREMHQLGVRHDKYTFASVL 192

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK--GSALRD 419
           + CS +  L  GR +H++ +KTG L+   V  AL+ MY   G + DA  VF+   S + D
Sbjct: 193 SLCS-LELLDFGREVHTLVIKTGFLVRASVINALLTMYFNSGKVADAYEVFEEAESTVHD 251

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
             ++N+MIGG    G  E+AL  F+ M +    P E+TFV V+S+CS
Sbjct: 252 DITFNVMIGGLASVGRDEEALIMFKEMQEACLRPTELTFVSVMSSCS 298



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 102/423 (24%), Positives = 176/423 (41%), Gaps = 42/423 (9%)

Query: 148 VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMY---------- 197
           +KP+ F L+S + A         G  +HA   + G ++ T VGN L+S Y          
Sbjct: 49  LKPDHFTLSSTLTACANLRYAASGNQLHAYSIQTGLKAYTHVGNTLLSFYAKSKDLVSVQ 108

Query: 198 -----MEN----------------GRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQ 236
                +EN                G++ Y   +F        V WNA+ +   + +  + 
Sbjct: 109 RVFNEIENPDVYSWTTLLSACTKLGQIGYACHLFNQTPRMIPVVWNAIITGCAENKHTEI 168

Query: 237 GLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
            L +F +M   G + +  TF  +L  C SL  + FG+++H   IK        V  +L+ 
Sbjct: 169 ALNLFREMHQLGVRHDKYTFASVLSLC-SLELLDFGREVHTLVIKTGFLVRASVINALLT 227

Query: 297 MYDKSGCLEDAGVAFDSLAN--KDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           MY  SG + DA   F+   +   D   +  +I   A  G  E AL  F++M+   ++  E
Sbjct: 228 MYFNSGKVADAYEVFEEAESTVHDDITFNVMIGGLASVGRDEEALIMFKEMQEACLRPTE 287

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            T  S ++ CS          +H+ A+K G      VS A + MY+ CG++     VF  
Sbjct: 288 LTFVSVMSSCSSARV---SHQVHAQAIKMGFEACTPVSNAAMTMYSSCGNLHAVHMVFDR 344

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
              +D  SWN++I  Y +      A+ AF  M   G  PDE T   +L++   + ++   
Sbjct: 345 LEEKDLISWNIIIMNYAQGNFYRLAILAFLQMQRAGIEPDEFTIGSLLASSESLEIV--- 401

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
            K F ++    G+   I+    ++    + G+  +          +PN + W  ++    
Sbjct: 402 -KMFQALVSKNGLNSKIEVSNALVSAFSKHGQIEQAYQVFNNMS-SPNLISWNTIISGFL 459

Query: 535 WHG 537
           ++G
Sbjct: 460 FNG 462



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 118/230 (51%), Gaps = 5/230 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A +VF +M   N++SWN +++G+  +G   + +  F  +     K + ++LS VL  
Sbjct: 433 IEQAYQVFNNMSSPNLISWNTIISGFLFNGFTLQGLEQFYELLMSTLKPNAYTLSIVLSI 492

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+   ++ G+ +H   +R G      L  +L+ MY+KCG  D +L++F  +   D+V+W
Sbjct: 493 CASISALRHGKQIHGYILRSGVFSVTSLGNALITMYAKCGDLDWSLRIFNVMNGRDIVSW 552

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRES-SVKPNQFVLTSLVRATTETGDQRCGESI-HAVI 178
            A+I+   Q G  +EA   F  M++S  VKP+Q   T+++ A +  G    G  I ++++
Sbjct: 553 NAMISAYAQHGKGKEAVHFFKAMQDSGGVKPDQATFTAVLSACSHAGLVDDGTRIFNSMV 612

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVS--WNALFS 226
             YGFE      + +V +    G +    R+  +  H   VS  W  LFS
Sbjct: 613 NDYGFEPGADHLSCIVDLLGRAGYLEEAERLINS-KHLKIVSSIWWTLFS 661


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 166/513 (32%), Positives = 279/513 (54%), Gaps = 4/513 (0%)

Query: 91  SLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIF-NLMRESSVK 149
           SLV +Y KCG    A  +F  +   +VV+W  ++      G   E   +F N++   +  
Sbjct: 55  SLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNAC 114

Query: 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRV 209
           PN++V T+ + A +  G  + G   H ++ K+G      V +ALV MY     V    +V
Sbjct: 115 PNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQV 174

Query: 210 FEAIAHQ---DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266
            + +  +   D  S+N++ +   +    ++ + +  +M+ +    +  T++ ++  C+ +
Sbjct: 175 LDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQI 234

Query: 267 SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
            D+  G ++HA  ++  L  +  VG+ L+DMY K G + +A   FD L N+++  +TA++
Sbjct: 235 RDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALM 294

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL 386
           T+Y Q G  E +L  F  M  EG   NE+T A  LN C+ +A L +G LLH+   K G  
Sbjct: 295 TAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARVEKLGFK 354

Query: 387 LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM 446
             + V  AL+ MY+K GSID +  VF     RD  +WN MI GY  HGLG++AL+ F+ M
Sbjct: 355 NHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLGKQALQVFQDM 414

Query: 447 LDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGK 506
           +     P+ +TF+ VLSA SH+GL++EG  + + + + + I P ++H+ CM+ +L RAG 
Sbjct: 415 VSAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLEHYTCMVALLSRAGL 474

Query: 507 FTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDI 566
             E ENF+  T++  + + W  LL AC  H N +L  + AE +L+++P     Y   S++
Sbjct: 475 LDEAENFMKTTQVKWDVVAWRTLLNACHVHRNYDLGRRIAESVLQMDPHDVGTYTLLSNM 534

Query: 567 SATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
            A   RW+    +R L+  + IKKEP  SW+++
Sbjct: 535 YAKARRWDGVVTIRKLMRERNIKKEPGASWLDI 567



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 117/457 (25%), Positives = 224/457 (49%), Gaps = 17/457 (3%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKF-SKFSLSTVLKGF 61
           LA+ +F +MP  NVVSWN L+ GY   G+  +V+ LF +M  ++    +++  +T L   
Sbjct: 68  LARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSAC 127

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP---DVV 118
           ++ G +K G   H +  + G    +++  +LV MYS+C   + AL+V   +      D+ 
Sbjct: 128 SHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIF 187

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           ++ +++  L + G  +EA ++   M +  V  +      ++    +  D + G  +HA +
Sbjct: 188 SYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARL 247

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            + G   D  VG+ L+ MY + G V     VF+ + +++ V W AL + +      ++ L
Sbjct: 248 LRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESL 307

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            +F  M  +G  PN  TF V+L AC+ ++ +  G  LHA   K     + +V  +L++MY
Sbjct: 308 NLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARVEKLGFKNHVIVRNALINMY 367

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            KSG ++ +   F  +  +D+  + A+I  Y+  G  + AL+ F+ M       N  T  
Sbjct: 368 SKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLGKQALQVFQDMVSAEECPNYVTFI 427

Query: 359 SCLNGCSPVATLANG-----RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
             L+  S +  +  G      L+ +  ++ G  L+ +  T +VA+ ++ G +D+AE   K
Sbjct: 428 GVLSAYSHLGLVKEGFYYLNHLMRNFKIEPG--LEHY--TCMVALLSRAGLLDEAENFMK 483

Query: 414 GSALR-DTASWNMMIGG---YVKHGLGEKALEAFRMM 446
            + ++ D  +W  ++     +  + LG +  E+   M
Sbjct: 484 TTQVKWDVVAWRTLLNACHVHRNYDLGRRIAESVLQM 520


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  308 bits (790), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 170/538 (31%), Positives = 285/538 (52%), Gaps = 3/538 (0%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMY--SKCGLADNALKVFYRIKDPDVVAWGAII 124
           I   +  HA+ +R     +   S  L+     S  G  + A K+F ++++PD      +I
Sbjct: 24  ISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMI 83

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
               +     EA  ++  M E  V  + +    ++ A    G  + G   H  + K GF 
Sbjct: 84  RGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFG 143

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
           SD  V NAL+  Y   G       VF+    +D V+WN + +   +    ++   +  +M
Sbjct: 144 SDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEM 203

Query: 245 L-LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
             L   +P+  T + ++ AC+ L ++  GK LH+++ +  LD N  V  +++DMY K   
Sbjct: 204 TKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDD 263

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +E A   F+ +  KD+ ++T++++  A++G  + AL  F+KM+L  I+ +E TL   L+ 
Sbjct: 264 IESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSA 323

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+    L  G+ +H +  K     D+ + TALV MYAKCGSID A  VF+   +R+  +W
Sbjct: 324 CAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTW 383

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
           N +IGG   HG GE A+  F  M  +  +PD++TF+ +L ACSH GL++EG   F ++K 
Sbjct: 384 NALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKN 443

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            + I P ++H+ C++D+L RA K  +   FI    +  N+++W  LLGAC   G+ +L E
Sbjct: 444 KFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAE 503

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
           K   +++ELEP     YV  S++ A   +W+    +R  + ++GI+K P CSWIE++G
Sbjct: 504 KIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNG 561



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/467 (23%), Positives = 213/467 (45%), Gaps = 7/467 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A+++F  M   +    N ++ GYA S +  + + L+  M +       ++   VL  
Sbjct: 61  LNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAA 120

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A  G +K G+  H   ++ G   D F+  +L+  Y  CG    A  VF      DVV W
Sbjct: 121 CARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTW 180

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRE-SSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
             +I     +G  ++A  + + M +  +++P++  + SLV A  + G+   G+ +H+   
Sbjct: 181 NIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSK 240

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           + G + +  V NA++ MY +   +     VF  I  +D +SW ++ S         + L 
Sbjct: 241 ELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALA 300

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F +M L   + +  T + +L AC+    +  GK +H    K  ++ + V+ T+LVDMY 
Sbjct: 301 LFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYA 360

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G ++ A   F  +  +++F + A+I   A  G  E A+  F +M  + +  ++ T  +
Sbjct: 361 KCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIA 420

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLD--MFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
            L  CS    +  G  +   A+K    ++  M     +V +  +   +DDA A  +   +
Sbjct: 421 LLCACSHAGLVDEGLAMFQ-AMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPI 479

Query: 418 R-DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
           + ++  W  ++G     G  + A +  R +++    PD     V+LS
Sbjct: 480 KANSVLWATLLGACRSGGHFDLAEKIGRRVIE--LEPDSCGRYVMLS 524


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 198/629 (31%), Positives = 322/629 (51%), Gaps = 49/629 (7%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+RVF  +   + VSWN+++N      + +  +HLF  M       + F+L +V   
Sbjct: 136 IDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPTSFTLVSVAHA 195

Query: 61  FAN--SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
            +N  +G +  G+ VHA  +R G     F + +LV MY+K G    A  +F    D D+V
Sbjct: 196 CSNLINGLL-LGKQVHAFVLRNG-DWRTFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLV 253

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA-V 177
           +W  II+ L Q    +EA    ++M +S V+PN   L S++ A +      CG+ IHA V
Sbjct: 254 SWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFV 313

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
           +       ++ VG ALV MY    +   G  VF+ +  +    WNA+ + +   E   + 
Sbjct: 314 LMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEA 373

Query: 238 LRIFYQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
           + +F +M+ + G  PN  T   +L AC         + +H+  +K   + +  V  +L+D
Sbjct: 374 IELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEKDKYVQNALMD 433

Query: 297 MYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM-------RLE- 348
           MY + G +E A   F S+  KD+ ++  +IT Y   G  + AL     M       R+  
Sbjct: 434 MYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINT 493

Query: 349 ----------GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAM 398
                      +K N  TL + L GC+ +A L  G+ +H+ AVK     D+ V +ALV M
Sbjct: 494 FDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVAVGSALVDM 553

Query: 399 YAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEG-----YVP 453
           YAKCG ++ +  VF+  ++R+  +WN++I  Y  HG GE+AL+ FR M++EG       P
Sbjct: 554 YAKCGCLNLSRTVFEQMSVRNVITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNNREIRP 613

Query: 454 DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENF 513
           +E+T++ + ++ SH G+++EG   F ++K  +GI PT  H+AC++D+LGR+G+  E  N 
Sbjct: 614 NEVTYIAIFASLSHSGMVDEGLNLFYTMKAKHGIEPTSDHYACLVDLLGRSGQIEEAYNL 673

Query: 514 ITETKLTPNAL----VWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISAT 569
           I   K  P+ +     W +LLGAC  H N+E+ E  A+ L  L+P +        D    
Sbjct: 674 I---KTMPSNMKKVDAWSSLLGACKIHQNLEIGEIAAKNLFVLDPNV-------LDYGTK 723

Query: 570 QGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
           Q      S +   +  +G++KEP CSWIE
Sbjct: 724 Q------SMLGRKMKEKGVRKEPGCSWIE 746



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 152/523 (29%), Positives = 245/523 (46%), Gaps = 26/523 (4%)

Query: 51  KFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFY 110
            F+   VLK  A    +  G+ +HA   + G AL   +  SLV+MY KCG  D A +VF 
Sbjct: 85  NFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSLVNMYGKCGDIDAARRVFD 144

Query: 111 RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTE-TGDQR 169
            I + D V+W ++I    +    + A  +F LM   +V P  F L S+  A +       
Sbjct: 145 EITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPTSFTLVSVAHACSNLINGLL 204

Query: 170 CGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
            G+ +HA + + G +  T   NALV+MY + GRV     +F+    +D VSWN + S   
Sbjct: 205 LGKQVHAFVLRNG-DWRTFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLS 263

Query: 230 DYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTI-KHSLDGNH 288
             +  ++ L   + ML  G +PN  T   +L ACS L  +G GK++HA  +  + L  N 
Sbjct: 264 QNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENS 323

Query: 289 VVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
            VG +LVDMY      E   + FD +  + +  + A+I  Y +      A++ F +M  E
Sbjct: 324 FVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFE 383

Query: 349 -GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
            G+  N  TL+S L  C    +  +   +HS  VK G   D +V  AL+ MY++ G I+ 
Sbjct: 384 LGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEI 443

Query: 408 AEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM-----------LDE------- 449
           A ++F     +D  SWN MI GYV  G  + AL     M            D+       
Sbjct: 444 ARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNF 503

Query: 450 GYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFT 508
              P+ +T + VL  C+ +  + +GK+ H  ++K++  ++  +   + ++D+  + G   
Sbjct: 504 PLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQM--LSKDVAVGSALVDMYAKCGCLN 561

Query: 509 EIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551
            +   + E     N + W  L+ A   HG  E   K   +++E
Sbjct: 562 -LSRTVFEQMSVRNVITWNVLIMAYGMHGKGEEALKLFRRMVE 603



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 111/335 (33%), Positives = 173/335 (51%), Gaps = 4/335 (1%)

Query: 134 QEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNAL 193
            +A   +  M  + V P+ F   ++++AT    D   G+ +HA + K+G    T V N+L
Sbjct: 67  HQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSL 126

Query: 194 VSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM 253
           V+MY + G +    RVF+ I ++D VSWN++ +    +E  +  + +F  MLL+   P  
Sbjct: 127 VNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPTS 186

Query: 254 CTFIVILKACSSL-SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
            T + +  ACS+L + +  GKQ+HA  +++  D       +LV MY K G + +A   FD
Sbjct: 187 FTLVSVAHACSNLINGLLLGKQVHAFVLRNG-DWRTFTNNALVTMYAKLGRVYEAKTLFD 245

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
              +KDL ++  II+S +Q    E AL     M   G++ N  TLAS L  CS +  L  
Sbjct: 246 VFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGC 305

Query: 373 GRLLHSIAVKTGHLLD-MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV 431
           G+ +H+  +    L++  FV  ALV MY  C   +    VF G   R  A WN MI GYV
Sbjct: 306 GKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYV 365

Query: 432 KHGLGEKALEAF-RMMLDEGYVPDEITFVVVLSAC 465
           ++    +A+E F  M+ + G  P+ +T   VL AC
Sbjct: 366 RNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPAC 400



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 87/257 (33%), Positives = 132/257 (51%), Gaps = 8/257 (3%)

Query: 224 LFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS 283
           L S+ Q   +  Q +  +  M+  G  P+   F  +LKA + + D+  GKQLHAH  K  
Sbjct: 56  LRSQTQSSSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFG 115

Query: 284 LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFR 343
                 V  SLV+MY K G ++ A   FD + N+D  ++ ++I +  +  E E+A+  FR
Sbjct: 116 QALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFR 175

Query: 344 KMRLEGIKSNEFTLASCLNGCSPVATLANGRLL----HSIAVKTGHLLDMFVSTALVAMY 399
            M LE +    FTL S  + CS    L NG LL    H+  ++ G     F + ALV MY
Sbjct: 176 LMLLENVGPTSFTLVSVAHACS---NLINGLLLGKQVHAFVLRNGD-WRTFTNNALVTMY 231

Query: 400 AKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFV 459
           AK G + +A+ +F     +D  SWN +I    ++   E+AL    +ML  G  P+ +T  
Sbjct: 232 AKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLA 291

Query: 460 VVLSACSHMGLIEEGKK 476
            VL ACSH+ ++  GK+
Sbjct: 292 SVLPACSHLEMLGCGKE 308


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 187/597 (31%), Positives = 310/597 (51%), Gaps = 14/597 (2%)

Query: 6   RVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSG 65
           R+F++ P  +    NALL     S    +   LF S       F+  SLS+      N  
Sbjct: 75  RLFRAFPCPDRFLRNALL----RSLPSLRPHLLFPSPDSFSFAFAATSLSSSCSSRGNDA 130

Query: 66  YIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIIT 125
              A + +H +++  G A D F++ +L  +Y K    D+A KVF  +  PD + W  ++ 
Sbjct: 131 --AAARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLA 188

Query: 126 CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
            L      +   ++ +  R   V+P+   L S +RA  E      G  +H    K G   
Sbjct: 189 GLPGSEALEAFVRMVDAGR---VRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAE 245

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
              V   L+S+Y + G +     +F+ + + D V++NAL S +      +  + +F ++ 
Sbjct: 246 HEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELT 305

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
             G++PN  T + ++   S        + LHA  +K  LD + +V T+L  +Y +   +E
Sbjct: 306 ASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDME 365

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
            A   FD++  K + ++ A+I+ YAQ G  EMA+  F+ M+   ++ N  T++S L+ C+
Sbjct: 366 SARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACA 425

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
            +  L+ G+ +H I  K    L+++V TAL+ MYAKCGSI +A ++F     ++  SWN 
Sbjct: 426 HLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNA 485

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIY 485
           MI GY  HG G +AL+ ++ MLD   +P   TF+ V+ ACSH GL++EG+K F  +   Y
Sbjct: 486 MISGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEY 545

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITE---TKLTPNALVWENLLGACSWHGNIELD 542
            ITP I+H  CM+D+LGRAGK  E    I+E   + + P   VW  LLGAC  H N +L 
Sbjct: 546 RITPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAIGPG--VWGALLGACMVHKNSDLA 603

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           +  ++KL EL+ +    YV  S++  ++  +++ + VR    ++ + K P C+ IE+
Sbjct: 604 KLASQKLFELDSENAGYYVLLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEI 660



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 180/363 (49%), Gaps = 5/363 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLKGFA 62
           A++VF ++P  + + WN LL G      G + +  F  M D  + +    +L++ L+  A
Sbjct: 168 ARKVFDTVPSPDTILWNTLLAGLP----GSEALEAFVRMVDAGRVRPDSTTLASSLRAAA 223

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
            + ++  G+ VH   ++ G A  + +   L+ +YSKCG  D+A  +F R+ +PD+VA+ A
Sbjct: 224 EASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNA 283

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I+     G  + + ++F  +  S  +PN   L +++   +  G +     +HA + K  
Sbjct: 284 LISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKAR 343

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            ++D LV  AL ++Y     +     +F+A+  +   SWNA+ S +      +  + +F 
Sbjct: 344 LDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQ 403

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
            M     +PN  T    L AC+ L  +  GK +H    K  L+ N  V T+L+DMY K G
Sbjct: 404 LMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCG 463

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            + +A   FD + NK++ ++ A+I+ Y   G+   ALK ++ M    I     T  S + 
Sbjct: 464 SIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVIY 523

Query: 363 GCS 365
            CS
Sbjct: 524 ACS 526



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 157/308 (50%), Gaps = 1/308 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A+ +F  M   ++V++NAL++GY+ +G  +  + LF  +     + +  +L  V+  
Sbjct: 263 MDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPV 322

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           ++  G+    + +HA  ++     D  +S +L  +Y +    ++A  +F  + +  + +W
Sbjct: 323 YSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESW 382

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+I+   Q G  + A  +F LM+E +V+PN   ++S + A    G    G+ +H +I K
Sbjct: 383 NAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISK 442

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              E +  V  AL+ MY + G ++    +F+ + +++ VSWNA+ S +  +    + L++
Sbjct: 443 EKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKL 502

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL-HAHTIKHSLDGNHVVGTSLVDMYD 299
           +  ML     P   TF+ ++ ACS    V  G+++    T ++ +       T +VD+  
Sbjct: 503 YKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLG 562

Query: 300 KSGCLEDA 307
           ++G L +A
Sbjct: 563 RAGKLNEA 570


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 173/499 (34%), Positives = 270/499 (54%), Gaps = 19/499 (3%)

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           AW +II C         +   FN MR  SV PN+ V  SL++A+T     +   S+HA  
Sbjct: 77  AWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACT 136

Query: 179 CKYGFESDTLVGNALVSMYM----------------ENGRVSYGSRVFEAIAHQDSVSWN 222
            + G +SD  + NAL++ Y                 E+G +    +VF+ +  +D VSWN
Sbjct: 137 VRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESG-IDCVKKVFDMMPVRDVVSWN 195

Query: 223 ALFSRFQDYESPDQGLRIFYQMLLKG-FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK 281
            + + F       + L +  +M   G  KP+  T   IL   +   DV  GK++H + ++
Sbjct: 196 TVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVR 255

Query: 282 HSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKC 341
           +  DG+  +G+SL+DMY K   LE +  AF  L  KD  ++ +II    Q GE +  L  
Sbjct: 256 NGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGF 315

Query: 342 FRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAK 401
           FR+M  E +K    + +S +  C+ +  L+ GR LH   V+ G   + F++++LV MYAK
Sbjct: 316 FRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAK 375

Query: 402 CGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVV 461
           CG+I  A  VF     RD  +W  +I G   HG    A+  F  ML++G  P  + F+ V
Sbjct: 376 CGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAV 435

Query: 462 LSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK-LT 520
           L+ACSH GL++EG ++F+S+++ +GI P ++H+A + D+LGRAG+  E  +FI+  + + 
Sbjct: 436 LTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQ 495

Query: 521 PNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVR 580
           P   VW  LL AC  H ++EL EK  +KLL ++ +    YV  S+I +   RW D + +R
Sbjct: 496 PTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAARLR 555

Query: 581 ALLSSQGIKKEPSCSWIEV 599
             +  +G+KK P+CSWIEV
Sbjct: 556 IHMRKKGLKKTPACSWIEV 574



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 118/450 (26%), Positives = 211/450 (46%), Gaps = 30/450 (6%)

Query: 18  SWNALLNGYAESGDGQKVMHL----FCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVV 73
           +W++++  Y        ++HL    F SM+ +    ++    ++LK      + K    +
Sbjct: 77  AWSSIIKCYTS----HSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSL 132

Query: 74  HAMAIRLGCALDKFLSCSLVDMYSKCGLA---------------DNALKVFYRIKDPDVV 118
           HA  +RLG   D +++ +L++ Y+K   A               D   KVF  +   DVV
Sbjct: 133 HACTVRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVV 192

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLM-RESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           +W  +I    Q G   EA  +   M +   +KP+ F L+S++    E  D   G+ IH  
Sbjct: 193 SWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGY 252

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
             + GF+ D  +G++L+ MY +  R+    R F  +  +D++SWN++ +        D+G
Sbjct: 253 AVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRG 312

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           L  F +ML +  KP   +F  ++ AC+ L+ +  G+QLH   ++   D N  + +SLVDM
Sbjct: 313 LGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDM 372

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K G ++ A   FD +  +D+ A+TAII   A  G A  A+  F  M  +G++      
Sbjct: 373 YAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAF 432

Query: 358 ASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA-EAVFKGS 415
            + L  CS    +  G R  +S+    G    +    A+  +  + G +++A + +    
Sbjct: 433 MAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMR 492

Query: 416 ALRDTAS-WNMMIGGYVKHG---LGEKALE 441
            ++ T S W++++     H    L EK L+
Sbjct: 493 GVQPTGSVWSILLAACRAHKSVELAEKVLD 522



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 134/265 (50%), Gaps = 1/265 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLK 59
           ++  K+VF  MP  +VVSWN ++ G+A++G   + + +   M K+ + K   F+LS++L 
Sbjct: 176 IDCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILP 235

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
            FA    +  G+ +H  A+R G   D F+  SL+DMY+KC   + +L+ FY +   D ++
Sbjct: 236 IFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAIS 295

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W +II    Q G        F  M + +VKP     +S++ A         G  +H  I 
Sbjct: 296 WNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIV 355

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           + GF+ +  + ++LV MY + G +     VF+ I  +D V+W A+      +      + 
Sbjct: 356 RLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVS 415

Query: 240 IFYQMLLKGFKPNMCTFIVILKACS 264
           +F  ML  G +P    F+ +L ACS
Sbjct: 416 LFENMLEDGVRPCYVAFMAVLTACS 440



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 122/293 (41%), Gaps = 34/293 (11%)

Query: 272 GKQLHAHTIK-----HSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
            KQLHAH +K     HS   N +V +   ++      L    +     +     A+++II
Sbjct: 28  AKQLHAHIVKTKGTLHS--DNILVLSLYSNLNLLQHSLH---LFNSLPSPPPPLAWSSII 82

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL 386
             Y       ++   F  MR   +  N     S L   + +        LH+  V+ G  
Sbjct: 83  KCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACTVRLGLD 142

Query: 387 LDMFVSTALVAMYAKCGS---------------IDDAEAVFKGSALRDTASWNMMIGGYV 431
            D++++ AL+  YAK  +               ID  + VF    +RD  SWN +I G+ 
Sbjct: 143 SDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTVIAGFA 202

Query: 432 KHGLGEKALEAFRMMLDEGYV-PDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITP 489
           ++G+  +AL+  R M   G + PD  T   +L   +    + +GK+ H  +++   G   
Sbjct: 203 QNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRN--GFDG 260

Query: 490 TIKHFACMIDILGRAGKFTEIENFITETKLTP--NALVWENLLGACSWHGNIE 540
            +   + +ID+  +  +   +E  +    + P  +A+ W +++  C  +G  +
Sbjct: 261 DVFIGSSLIDMYAKCNR---LECSLRAFYILPRKDAISWNSIIAGCVQNGEFD 310


>gi|147863814|emb|CAN79347.1| hypothetical protein VITISV_019894 [Vitis vinifera]
          Length = 667

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 165/513 (32%), Positives = 272/513 (53%), Gaps = 8/513 (1%)

Query: 91  SLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKP 150
           +++  Y K GL   A+K+F      D  +W  +++   +     E    F  MR SSV+P
Sbjct: 86  TILSGYFKFGLVSEAIKLFDGTSKRDCHSWNIVLSGCVKNHKLGEGLTHFMKMRCSSVRP 145

Query: 151 NQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF 210
           + F    ++       D   G+ +HA I K   + D  +G  L+ MY E G +    +VF
Sbjct: 146 DNFTYAIIIPCC----DLGFGQQVHADIVKVCSDLDAFIGTNLLRMYAEVGEIGDARKVF 201

Query: 211 EAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVG 270
           + +  +  V+WNA+ S +  Y   D+ + +F Q+  +G   +  T+ ++L   ++   V 
Sbjct: 202 DGMPSRGLVTWNAMISCYSKYGRGDKSIGLFRQLXREGISADEYTYAIVLNEFAARWQVF 261

Query: 271 FGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
              Q+H+  I+     +     +LV++Y K G +  A   F+ + ++D+ ++T II  + 
Sbjct: 262 EAMQVHSLIIERGFCSDRFTNNALVNLYSKCGYVASASRLFEEIPDQDVVSWTVIIVGFL 321

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL-LDM 389
           Q+G  E A+  F +M+L  I+ N FT    L  C+       GR  H + +K G L  D+
Sbjct: 322 QSGHMEEAMWLFYQMQLGDIEPNSFTFGGLLGACADANAFQKGRHFHGLVLKFGLLGADV 381

Query: 390 FVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML-- 447
            V +A+V MY+KCG + DA   F+    RD ASWN +I GY ++G G KAL+ +  M+  
Sbjct: 382 VVGSAVVDMYSKCGEMGDALRAFQEMPERDIASWNGIICGYAQNGAGMKALKLYNEMVLL 441

Query: 448 -DEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGK 506
              G  P+E+TFV VL ACSH GL++EG  +F  +   + I PT +H+ CM+D+LGRAG 
Sbjct: 442 GPSGIAPNEVTFVGVLCACSHNGLLKEGYSYFKEMVDKHLIKPTAEHYTCMVDLLGRAGL 501

Query: 507 FTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDI 566
             E E  I    + P+ ++W  LLGAC  HG++++  + AE L   EP+  SNYV  ++ 
Sbjct: 502 LQEAEALILALPIKPDNVMWGALLGACKLHGDVQMTRRTAEHLYTNEPRNSSNYVLLANS 561

Query: 567 SATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
               G W +   +R ++ ++G++K   CSW+E+
Sbjct: 562 YTDIGEWGEAVEIREVMEARGVEKTAGCSWVEI 594



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 134/465 (28%), Positives = 214/465 (46%), Gaps = 35/465 (7%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLF--CSMKDMEK-------------- 47
           A ++   MP+ +VVS+N +L+GY + G   + + LF   S +D                 
Sbjct: 69  AHKLLHFMPQPSVVSYNTILSGYFKFGLVSEAIKLFDGTSKRDCHSWNIVLSGCVKNHKL 128

Query: 48  -----KFSKFSLSTVLK-GFANSGYIKA-----GQVVHAMAIRLGCALDKFLSCSLVDMY 96
                 F K   S+V    F  +  I       GQ VHA  +++   LD F+  +L+ MY
Sbjct: 129 GEGLTHFMKMRCSSVRPDNFTYAIIIPCCDLGFGQQVHADIVKVCSDLDAFIGTNLLRMY 188

Query: 97  SKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLT 156
           ++ G   +A KVF  +    +V W A+I+C  + G   ++  +F  +    +  +++   
Sbjct: 189 AEVGEIGDARKVFDGMPSRGLVTWNAMISCYSKYGRGDKSIGLFRQLXREGISADEYTYA 248

Query: 157 SLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ 216
            ++              +H++I + GF SD    NALV++Y + G V+  SR+FE I  Q
Sbjct: 249 IVLNEFAARWQVFEAMQVHSLIIERGFCSDRFTNNALVNLYSKCGYVASASRLFEEIPDQ 308

Query: 217 DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLH 276
           D VSW  +   F      ++ + +FYQM L   +PN  TF  +L AC+  +    G+  H
Sbjct: 309 DVVSWTVIIVGFLQSGHMEEAMWLFYQMQLGDIEPNSFTFGGLLGACADANAFQKGRHFH 368

Query: 277 AHTIKHSLDG-NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEA 335
              +K  L G + VVG+++VDMY K G + DA  AF  +  +D+ ++  II  YAQ G  
Sbjct: 369 GLVLKFGLLGADVVVGSAVVDMYSKCGEMGDALRAFQEMPERDIASWNGIICGYAQNGAG 428

Query: 336 EMALKCFRKMRL---EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS 392
             ALK + +M L    GI  NE T    L  CS    L  G       V   HL+     
Sbjct: 429 MKALKLYNEMVLLGPSGIAPNEVTFVGVLCACSHNGLLKEGYSYFKEMVDK-HLIKPTAE 487

Query: 393 --TALVAMYAKCGSIDDAEAVFKGSALR-DTASWNMMIGGYVKHG 434
             T +V +  + G + +AEA+     ++ D   W  ++G    HG
Sbjct: 488 HYTCMVDLLGRAGLLQEAEALILALPIKPDNVMWGALLGACKLHG 532



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/347 (29%), Positives = 177/347 (51%), Gaps = 14/347 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF  MP   +V+WNA+++ Y++ G G K + LF  +        +++ + VL  FA 
Sbjct: 197 ARKVFDGMPSRGLVTWNAMISCYSKYGRGDKSIGLFRQLXREGISADEYTYAIVLNEFAA 256

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +     VH++ I  G   D+F + +LV++YSKCG   +A ++F  I D DVV+W  I
Sbjct: 257 RWQVFEAMQVHSLIIERGFCSDRFTNNALVNLYSKCGYVASASRLFEEIPDQDVVSWTVI 316

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG- 182
           I    Q G  +EA  +F  M+   ++PN F    L+ A  +    + G   H ++ K+G 
Sbjct: 317 IVGFLQSGHMEEAMWLFYQMQLGDIEPNSFTFGGLLGACADANAFQKGRHFHGLVLKFGL 376

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
             +D +VG+A+V MY + G +    R F+ +  +D  SWN +   +    +  + L+++ 
Sbjct: 377 LGADVVVGSAVVDMYSKCGEMGDALRAFQEMPERDIASWNGIICGYAQNGAGMKALKLYN 436

Query: 243 QMLL---KGFKPNMCTFIVILKACS--SLSDVG---FGKQLHAHTIKHSLDGNHVVGTSL 294
           +M+L    G  PN  TF+ +L ACS   L   G   F + +  H IK + +      T +
Sbjct: 437 EMVLLGPSGIAPNEVTFVGVLCACSHNGLLKEGYSYFKEMVDKHLIKPTAEHY----TCM 492

Query: 295 VDMYDKSGCLEDAGVAFDSLANK-DLFAYTAIITSYAQAGEAEMALK 340
           VD+  ++G L++A     +L  K D   + A++ +    G+ +M  +
Sbjct: 493 VDLLGRAGLLQEAEALILALPIKPDNVMWGALLGACKLHGDVQMTRR 539



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 108/402 (26%), Positives = 196/402 (48%), Gaps = 19/402 (4%)

Query: 191 NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFK 250
           N ++S Y + G VS   ++F+  + +D  SWN + S         +GL  F +M     +
Sbjct: 85  NTILSGYFKFGLVSEAIKLFDGTSKRDCHSWNIVLSGCVKNHKLGEGLTHFMKMRCSSVR 144

Query: 251 PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVA 310
           P+  T+ +I+  C    D+GFG+Q+HA  +K   D +  +GT+L+ MY + G + DA   
Sbjct: 145 PDNFTYAIIIPCC----DLGFGQQVHADIVKVCSDLDAFIGTNLLRMYAEVGEIGDARKV 200

Query: 311 FDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATL 370
           FD + ++ L  + A+I+ Y++ G  + ++  FR++  EGI ++E+T A  LN  +    +
Sbjct: 201 FDGMPSRGLVTWNAMISCYSKYGRGDKSIGLFRQLXREGISADEYTYAIVLNEFAARWQV 260

Query: 371 ANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGY 430
                +HS+ ++ G   D F + ALV +Y+KCG +  A  +F+    +D  SW ++I G+
Sbjct: 261 FEAMQVHSLIIERGFCSDRFTNNALVNLYSKCGYVASASRLFEEIPDQDVVSWTVIIVGF 320

Query: 431 VKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGIT-P 489
           ++ G  E+A+  F  M      P+  TF  +L AC+     ++G +HF  +   +G+   
Sbjct: 321 LQSGHMEEAMWLFYQMQLGDIEPNSFTFGGLLGACADANAFQKG-RHFHGLVLKFGLLGA 379

Query: 490 TIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKL 549
            +   + ++D+  + G+  +      E      A          SW+G I    ++   +
Sbjct: 380 DVVVGSAVVDMYSKCGEMGDALRAFQEMPERDIA----------SWNGIICGYAQNGAGM 429

Query: 550 LELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
             L+   E   + PS I+  +     F GV    S  G+ KE
Sbjct: 430 KALKLYNEMVLLGPSGIAPNE---VTFVGVLCACSHNGLLKE 468



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 4/108 (3%)

Query: 375 LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG 434
           +LH+  VK G +  ++    L+  Y    ++ DA  +          S+N ++ GY K G
Sbjct: 36  VLHASLVKNGLIAHVYQCNILLQAYINSQALSDAHKLLHFMPQPSVVSYNTILSGYFKFG 95

Query: 435 LGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           L  +A++ F    D     D  ++ +VLS C     + EG  HF  ++
Sbjct: 96  LVSEAIKLF----DGTSKRDCHSWNIVLSGCVKNHKLGEGLTHFMKMR 139


>gi|218197313|gb|EEC79740.1| hypothetical protein OsI_21088 [Oryza sativa Indica Group]
          Length = 1068

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 189/600 (31%), Positives = 311/600 (51%), Gaps = 9/600 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A ++F  M   + +SW A+++GY ++G   K + ++  M+         ++++ L   A 
Sbjct: 352 AGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVNPDDVTIASALAACAC 411

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G +  G  +H +A   G      ++ +L++MY+K    D A++VF  + + DVV+W ++
Sbjct: 412 LGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSM 471

Query: 124 IT--CLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           I   C + +    +A   F  M    VKPN     + + A   TG  R G+ IHA + + 
Sbjct: 472 IAGFCFNHRSF--DALYYFRYML-GHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRC 528

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G  S+  V NAL+ +Y++ G+ SY    F   + +D VSWN + S F  +   D  L +F
Sbjct: 529 GIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLF 588

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            QM+            +   AC    DVG   +LH            VV  +L++MY KS
Sbjct: 589 NQMMYTSLGRMGACSALAACACLGRLDVGI--KLHELAQNKGFIRYVVVANALLEMYAKS 646

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
             ++ A   F  +A KD+ +++++I  +     +  AL  FR M L  +K N  T  + L
Sbjct: 647 KHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFDALYYFRYM-LGHVKPNSVTFIAAL 705

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           + C+    L +G+ +H+  ++ G   + +V  AL+ +Y KCG    A A F   + +D  
Sbjct: 706 SACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVV 765

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SWN+M+ G+V HGLG+ AL  F  M++ G  PDE+TFV+ + ACS  G++ +G + F   
Sbjct: 766 SWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVL-MCACSRAGMVIQGWELFHRR 824

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
            + + I P +KH+ACM+D+L R GK TE  N I    + P+A VW  LL  C  H ++EL
Sbjct: 825 TEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVEL 884

Query: 542 DEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
            E  A+ +LELEP   + +V   D+    G+W   + VR  +  +G++++  CSW+EV G
Sbjct: 885 GELAAKVILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGLEQDNGCSWVEVKG 944



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 133/444 (29%), Positives = 222/444 (50%), Gaps = 1/444 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A RVF  MPE +V SWN ++ GY + G  ++ + L+  M     +   ++   VL+    
Sbjct: 150 AWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGG 209

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
               + G+ VHA  +R G   +  +  +LV MY+KCG    A KVF  +   D ++W A+
Sbjct: 210 IPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAMTDCISWNAM 269

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    +   C+   ++F  M E+ V+PN   +TS+  A+    +    + +H    K GF
Sbjct: 270 IAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGF 329

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D    N+L+ MY   GR+    ++F  +  +D++SW A+ S ++    PD+ L ++  
Sbjct: 330 AIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYAL 389

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M L    P+  T    L AC+ L  +  G +LH            VV  +L++MY KS  
Sbjct: 390 MELHNVNPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKH 449

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           ++ A   F  +A KD+ +++++I  +     +  AL  FR M L  +K N  T  + L+ 
Sbjct: 450 IDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFDALYYFRYM-LGHVKPNSVTFIAALSA 508

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
           C+    L +G+ +H+  ++ G   + +V  AL+ +Y KCG    A A F   + +D  SW
Sbjct: 509 CAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSW 568

Query: 424 NMMIGGYVKHGLGEKALEAFRMML 447
           N+M+ G+V HGLG+ AL  F  M+
Sbjct: 569 NIMLSGFVAHGLGDIALSLFNQMM 592



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 138/475 (29%), Positives = 245/475 (51%), Gaps = 8/475 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF  M   + +SWNA++ G+ E+ + +  + LF +M + E + +  ++++V      
Sbjct: 251 ARKVFDGMAMTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGM 310

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +   + +H  A++ G A+D     SL+ MY+  G   +A K+F R++  D ++W A+
Sbjct: 311 LSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAM 370

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I+  ++ G   +A +++ LM   +V P+   + S + A    G    G  +H +    GF
Sbjct: 371 ISGYEKNGFPDKALEVYALMELHNVNPDDVTIASALAACACLGRLDVGIKLHELAQNKGF 430

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF-QDYESPDQGLRIFY 242
               +V NAL+ MY ++  +     VF+ +A +D VSW+++ + F  ++ S D     ++
Sbjct: 431 IRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFDA--LYYF 488

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           + +L   KPN  TFI  L AC++   +  GK++HA+ ++  +     V  +L+D+Y K G
Sbjct: 489 RYMLGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCG 548

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
               A   F   + KD+ ++  +++ +   G  ++AL  F +M    +        S L 
Sbjct: 549 QTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMMYTSL--GRMGACSALA 606

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+ +  L  G  LH +A   G +  + V+ AL+ MYAK   ID A  VFK  A +D  S
Sbjct: 607 ACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVS 666

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYV-PDEITFVVVLSACSHMGLIEEGKK 476
           W+ MI G+  +     AL  FR ML  G+V P+ +TF+  LSAC+  G +  GK+
Sbjct: 667 WSSMIAGFCFNHRSFDALYYFRYML--GHVKPNSVTFIAALSACAATGALRSGKE 719



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 126/391 (32%), Positives = 209/391 (53%), Gaps = 5/391 (1%)

Query: 88  LSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESS 147
           L  +++ M  + G   +A +VF ++ + DV +W  ++    + G  +EA  ++  M  + 
Sbjct: 133 LGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAG 192

Query: 148 VKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGS 207
           ++P+ +    ++R      D R G  +HA + ++GF  +  V NALV+MY + G +    
Sbjct: 193 MRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAAR 252

Query: 208 RVFEAIAHQDSVSWNALFS-RFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSL 266
           +VF+ +A  D +SWNA+ +  F+++E  + GL +F  ML    +PN+ T   +  A   L
Sbjct: 253 KVFDGMAMTDCISWNAMIAGHFENHEC-EAGLELFLTMLENEVQPNLMTITSVTVASGML 311

Query: 267 SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
           S+VGF K++H   +K     +     SL+ MY   G + DAG  F  +  KD  ++TA+I
Sbjct: 312 SEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMI 371

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL 386
           + Y + G  + AL+ +  M L  +  ++ T+AS L  C+ +  L  G  LH +A   G +
Sbjct: 372 SGYEKNGFPDKALEVYALMELHNVNPDDVTIASALAACACLGRLDVGIKLHELAQNKGFI 431

Query: 387 LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM 446
             + V+ AL+ MYAK   ID A  VFK  A +D  SW+ MI G+  +     AL  FR M
Sbjct: 432 RYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFDALYYFRYM 491

Query: 447 LDEGYV-PDEITFVVVLSACSHMGLIEEGKK 476
           L  G+V P+ +TF+  LSAC+  G +  GK+
Sbjct: 492 L--GHVKPNSVTFIAALSACAATGALRSGKE 520



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 116/465 (24%), Positives = 220/465 (47%), Gaps = 11/465 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A  VFK M E +VVSW++++ G+  +      ++ F  M    K  S  +    L  
Sbjct: 450 IDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFDALYYFRYMLGHVKPNS-VTFIAALSA 508

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A +G +++G+ +HA  +R G   + ++  +L+D+Y KCG    A   F    + DVV+W
Sbjct: 509 CAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSW 568

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +++     G    A  +FN M  +S+   +    S + A    G    G  +H +   
Sbjct: 569 NIMLSGFVAHGLGDIALSLFNQMMYTSL--GRMGACSALAACACLGRLDVGIKLHELAQN 626

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF-QDYESPDQGLR 239
            GF    +V NAL+ MY ++  +     VF+ +A +D VSW+++ + F  ++ S D    
Sbjct: 627 KGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFDA--L 684

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
            +++ +L   KPN  TFI  L AC++   +  GK++HA+ ++  +     V  +L+D+Y 
Sbjct: 685 YYFRYMLGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYV 744

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G    A   F   + KD+ ++  +++ +   G  ++AL  F +M   G   +E T   
Sbjct: 745 KCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFV- 803

Query: 360 CLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
            +  CS    +  G  L H    K   + ++     +V + ++ G + +A  +     ++
Sbjct: 804 LMCACSRAGMVIQGWELFHRRTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIK 863

Query: 419 -DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVL 462
            D A W  ++ G   H   E    A +++L+    P+++ + V+L
Sbjct: 864 PDAAVWGALLNGCRIHRHVELGELAAKVILE--LEPNDVAYHVLL 906


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 171/550 (31%), Positives = 288/550 (52%), Gaps = 3/550 (0%)

Query: 53  SLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRI 112
           + + +LK  A    +  G+ VHA     G A +   S +L +MY KC    +A +VF R+
Sbjct: 18  TFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRM 77

Query: 113 KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMR--ESSVKPNQFVLTSLVRATTETGDQRC 170
              D VAW A++    + G    A +    M+  E   +P+   L S++ A  +      
Sbjct: 78  PSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHA 137

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
              +HA   + G +    V  A++  Y + G V     VF+ +  ++SVSWNA+   + D
Sbjct: 138 CREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYAD 197

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
             +  + + +F++M+ +G      + +  L+AC  L  +   +++H   ++  L  N  V
Sbjct: 198 NGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSV 257

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDL-FAYTAIITSYAQAGEAEMALKCFRKMRLEG 349
             +L+  Y K    + A   F+ L NK    ++ A+I  + Q    E A + F +M+LE 
Sbjct: 258 TNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLEN 317

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           ++ + FTL S +   + ++     R +H  +++     D++V TAL+ MY+KCG +  A 
Sbjct: 318 VRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIAR 377

Query: 410 AVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
            +F  +  R   +WN MI GY  HG G+ A+E F  M   G +P+E TF+ VL+ACSH G
Sbjct: 378 RLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHAG 437

Query: 470 LIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENL 529
           L++EG+K+F+S+KK YG+ P ++H+  M+D+LGRAGK  E  +FI    + P   V+  +
Sbjct: 438 LVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAM 497

Query: 530 LGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIK 589
           LGAC  H N+EL E+ A+ + EL P+    +V  ++I A    W D + VR  +  +G++
Sbjct: 498 LGACKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYANASMWKDVARVRTAMEKKGLQ 557

Query: 590 KEPSCSWIEV 599
           K P  S I++
Sbjct: 558 KTPGWSIIQL 567



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 132/467 (28%), Positives = 231/467 (49%), Gaps = 11/467 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDME--KKFSKFSLSTVLKGF 61
           A+RVF  MP  + V+WNA++ GYA +G     M     M+  E  ++    +L +VL   
Sbjct: 70  ARRVFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPAC 129

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKF--LSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           A++  + A + VHA A+R G  LD+   +S +++D Y KCG  + A  VF  +   + V+
Sbjct: 130 ADARALHACREVHAFALRAG--LDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVS 187

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W A+I      G   EA  +F  M +  V      + + ++A  E G       +H ++ 
Sbjct: 188 WNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLV 247

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDS-VSWNALFSRFQDYESPDQGL 238
           + G  S+  V NAL++ Y +  R    ++VF  + ++ + +SWNA+   F   E P+   
Sbjct: 248 RVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAE 307

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           R+F +M L+  +P+  T + ++ A + +SD    + +H ++I+H LD +  V T+L+DMY
Sbjct: 308 RLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMY 367

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G +  A   FDS  ++ +  + A+I  Y   G  + A++ F +M+  G   NE T  
Sbjct: 368 SKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFL 427

Query: 359 SCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           S L  CS    +  G +   S+    G    M     +V +  + G +D+A +  K   +
Sbjct: 428 SVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPI 487

Query: 418 RDTAS-WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
               S +  M+G    H   E A E+ +++ + G  P+E  + V+L+
Sbjct: 488 EPGISVYGAMLGACKLHKNVELAEESAQIIFELG--PEEGVYHVLLA 532



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 161/309 (52%), Gaps = 2/309 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ VF  MP  N VSWNA+++GYA++G+  + M LF  M       +  S+   L+ 
Sbjct: 170 VEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQA 229

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV-VA 119
               GY+   + VH + +R+G + +  ++ +L+  Y+KC  AD A +VF  + +    ++
Sbjct: 230 CGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRIS 289

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W A+I    Q  C ++A ++F  M+  +V+P+ F L S++ A  +  D      IH    
Sbjct: 290 WNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSI 349

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           ++  + D  V  AL+ MY + GRVS   R+F++   +  ++WNA+   +  +      + 
Sbjct: 350 RHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVE 409

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK-HSLDGNHVVGTSLVDMY 298
           +F +M   G  PN  TF+ +L ACS    V  G++  A   K + L+       ++VD+ 
Sbjct: 410 LFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLL 469

Query: 299 DKSGCLEDA 307
            ++G L++A
Sbjct: 470 GRAGKLDEA 478



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 164/342 (47%), Gaps = 31/342 (9%)

Query: 251 PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVA 310
           P + TF  +LK C++ +D+  G+ +HA      L    +  T+L +MY K     DA   
Sbjct: 14  PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRV 73

Query: 311 FDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE--GIKSNEFTLASCLNGCSPVA 368
           FD + ++D  A+ A++  YA+ G    A++   +M+ E  G + +  TL S L  C+   
Sbjct: 74  FDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADAR 133

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
            L   R +H+ A++ G    + VSTA++  Y KCG+++ A AVF    +R++ SWN MI 
Sbjct: 134 ALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMID 193

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGIT 488
           GY  +G   +A+  F  M+ EG    + + +  L AC  +G ++E ++    + ++ G++
Sbjct: 194 GYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRV-GLS 252

Query: 489 PTIKHFACMIDILGRAGK-------FTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
             +     +I    +  +       F E+ N   +T+++ NA++       C        
Sbjct: 253 SNVSVTNALITTYAKCKRADLAAQVFNELGN--KKTRISWNAMILGFTQNECP------- 303

Query: 542 DEKDAEKL---LELEPKMESNYVFPSDISAT-------QGRW 573
             +DAE+L   ++LE     ++   S I A        Q RW
Sbjct: 304 --EDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARW 343


>gi|92429671|gb|ABE77204.1| unknown [Sorghum bicolor]
          Length = 795

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 178/601 (29%), Positives = 305/601 (50%), Gaps = 1/601 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M+ A   F  +        N ++ G+A++      +  + +M D   +  +F+   VLK 
Sbjct: 70  MDEAADAFAGVTRPGAFLHNVMIRGFADADLPLDALAAYRAMLDAGARPDRFTFPVVLKC 129

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A +G +  G+  HA  I+LG   D + + SLV +Y+K GL  +A +VF  +   D+V+W
Sbjct: 130 CARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVFDGMPARDIVSW 189

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRES-SVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
             ++      G    A   F  M ++  V  +   + + + A         G  IH    
Sbjct: 190 NTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIAALAACCLESALALGREIHGYAI 249

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           ++G E D  VG +LV MY + G V +   VF  +  +  V+WN +   +   E P     
Sbjct: 250 RHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGGYALNERPVDAFD 309

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
            F QM + GF+  + T I +L AC+      FG+ +HA+ ++     + V+ T+L++MY 
Sbjct: 310 CFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLPHVVLETALLEMYG 369

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G +E +   F  + +K L ++  +I +Y      + A+  F ++  + +  + FT+ +
Sbjct: 370 KVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEAIALFLELLNQPLYPDYFTMTT 429

Query: 360 CLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
            +     + ++   + +HS  VK G+     +  A++ MYA+CG+I  +  +F     +D
Sbjct: 430 VVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMNAVMHMYARCGNIVASREIFDKMPGKD 489

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
             SWN +I GY  HG G+ ALE F  M   G  P+E TFV VL+ACS  GL  EG K F+
Sbjct: 490 VISWNTIIIGYAIHGQGKIALEMFDEMKCSGMEPNESTFVSVLTACSVSGLEAEGWKEFN 549

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
           S+++ YG+ P I+H+ CM D+LGRAG+  E+  FI    + P + +W +LL A     +I
Sbjct: 550 SMQQEYGMIPQIEHYGCMTDLLGRAGELREVLRFIENMPIAPTSRIWGSLLTASRNKNDI 609

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           ++ E  AE++ +LE      YV  S + A  GRW D   +R+L+  +G+++  + S +E+
Sbjct: 610 DIAEYAAERIFQLEHNNTGCYVVLSSMYADAGRWEDVERIRSLMKEKGLRRTEARSLVEL 669

Query: 600 D 600
           +
Sbjct: 670 N 670



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 125/477 (26%), Positives = 212/477 (44%), Gaps = 12/477 (2%)

Query: 91  SLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKP 150
           SL+  +   G  D A   F  +  P       +I          +A   +  M ++  +P
Sbjct: 59  SLILSHVAAGRMDEAADAFAGVTRPGAFLHNVMIRGFADADLPLDALAAYRAMLDAGARP 118

Query: 151 NQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF 210
           ++F    +++     G    G + HA + K G  +D    N+LV++Y + G V    RVF
Sbjct: 119 DRFTFPVVLKCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVF 178

Query: 211 EAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM---LLKGFKPNMCTFIVILKACSSLS 267
           + +  +D VSWN +   +         L  F +M   L  G   +    I  L AC   S
Sbjct: 179 DGMPARDIVSWNTMVDGYVSNGMGALALACFREMNDALQVGH--DSVGVIAALAACCLES 236

Query: 268 DVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIIT 327
            +  G+++H + I+H L+ +  VGTSLVDMY K G +  A   F  +  + +  +  +I 
Sbjct: 237 ALALGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIG 296

Query: 328 SYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL 387
            YA       A  CF +MR++G +    T  + L  C+   +   GR +H+  V+   L 
Sbjct: 297 GYALNERPVDAFDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLP 356

Query: 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML 447
            + + TAL+ MY K G ++ +E +F     +   SWN MI  Y+   + ++A+  F  +L
Sbjct: 357 HVVLETALLEMYGKVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEAIALFLELL 416

Query: 448 DEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKI-YGITPTIKHFACMIDILGRAGK 506
           ++   PD  T   V+ A   +G I + K+  S I K+ YG +  I +   ++ +  R G 
Sbjct: 417 NQPLYPDYFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMN--AVMHMYARCGN 474

Query: 507 FTEIENFITETKLTPNALVWENLLGACSWHGN--IELDEKDAEKLLELEPKMESNYV 561
                  I +     + + W  ++   + HG   I L+  D  K   +EP  ES +V
Sbjct: 475 IVASRE-IFDKMPGKDVISWNTIIIGYAIHGQGKIALEMFDEMKCSGMEPN-ESTFV 529


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 190/597 (31%), Positives = 298/597 (49%), Gaps = 26/597 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A  VF +MP  + VS+NA+++GY  +       +LF  M + +     FS + +L     
Sbjct: 68  ALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDL----FSWNVML----- 118

Query: 64  SGYIKAGQVVHAMAI-RLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           +GY++  ++  A  +  L    D     SL+  Y++ G  D A +VF  + + + ++W  
Sbjct: 119 TGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNG 178

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           ++      G  +EA  +F    +  +     ++   VR   + GD R       V     
Sbjct: 179 LLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVR-KKKLGDARWLFDKMPV----- 232

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
              D +  N ++S Y + G +S   R+F+    +D  +W A+ S +      D+    F 
Sbjct: 233 --RDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFD 290

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M  K    N  ++  ++        +   ++L       ++        +++  Y + G
Sbjct: 291 EMPEK----NEVSYNAMIAGYVQTKKMDIARELFESMPCRNISS----WNTMITGYGQIG 342

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            +  A   FD +  +D  ++ AII  YAQ+G  E AL  F +++ +G   N  T    L+
Sbjct: 343 DIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALS 402

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+ +A L  G+ +H  AVK G+    FV  AL+AMY KCGSID+A   F+G   +D  S
Sbjct: 403 TCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVS 462

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN M+ GY +HG G +AL  F  M   G  PDEIT V VLSACSH GL++ G ++F S+ 
Sbjct: 463 WNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMT 522

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           K YG+ PT KH+ CMID+LGRAG+  E ++ I      P A  W  LLGA   HGN EL 
Sbjct: 523 KDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELG 582

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           EK AE + ++EP+    YV  S++ A  GRW D   +R+ +   G++K P  SW+EV
Sbjct: 583 EKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEV 639



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 126/509 (24%), Positives = 224/509 (44%), Gaps = 80/509 (15%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAES---GDGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           LA+ +F  MPE ++ SWN +L GY  +   GD +++  L    KD+       S +++L 
Sbjct: 98  LARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPE-KDV------VSWNSLLS 150

Query: 60  GFANSGYIKAGQ--------------------VVHAMAIRLGCALDKFLSCSLVDMYS-- 97
           G+A +GY+   +                     VH   I   C L  F S S  D+ S  
Sbjct: 151 GYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLL--FESKSDWDLISWN 208

Query: 98  --------KCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK 149
                   K  L D A  +F ++   D ++W  +I+   Q G   +A ++F+   ES  +
Sbjct: 209 CLMGGFVRKKKLGD-ARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFD---ESPTR 264

Query: 150 PNQFVLTSLVRATTETG------------DQRCGESIHAVICKYG-----------FES- 185
            + F  T++V    + G             ++   S +A+I  Y            FES 
Sbjct: 265 -DVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESM 323

Query: 186 ---DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
              +    N +++ Y + G ++   + F+ +  +D VSW A+ + +      ++ L +F 
Sbjct: 324 PCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFV 383

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           ++   G   N  TF   L  C+ ++ +  GKQ+H   +K        VG +L+ MY K G
Sbjct: 384 EIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCG 443

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            +++A   F+ +  KD+ ++  ++  YA+ G    AL  F  M+  G+K +E T+   L+
Sbjct: 444 SIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLS 503

Query: 363 GCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD-T 420
            CS    L  G    +S+    G +      T ++ +  + G +++A+ + +    +   
Sbjct: 504 ACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGA 563

Query: 421 ASWNMMIGGYVKHG---LGEKALE-AFRM 445
           ASW  ++G    HG   LGEKA E  F+M
Sbjct: 564 ASWGALLGASRIHGNTELGEKAAEMVFKM 592



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 171/402 (42%), Gaps = 44/402 (10%)

Query: 111 RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLM-RESSVKPNQFVLTSLVRATTETGDQR 169
           R+KDPD++ W   I+   + G C  A  +FN M R SSV  N  + +  +R +     + 
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMI-SGYLRNSKFNLARN 101

Query: 170 CGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
             + +         E D    N +++ Y+ N R+    R+F+ +  +D VSWN+L S + 
Sbjct: 102 LFDQMP--------ERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYA 153

Query: 230 DYESPDQGLRIFYQMLLKG---FKPNMCTFI---VILKAC---SSLSDV----------G 270
                D+   +F  M  K    +   +  ++    I +AC    S SD           G
Sbjct: 154 QNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGG 213

Query: 271 FGKQLHAHTIKHSLDG----NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
           F ++      +   D     + +   +++  Y + G L  A   FD    +D+F +TA++
Sbjct: 214 FVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMV 273

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR-LLHSIAVKTGH 385
           + Y Q G  + A   F +M     + NE +  + + G      +   R L  S+  +   
Sbjct: 274 SGYVQNGMLDEAKTFFDEMP----EKNEVSYNAMIAGYVQTKKMDIARELFESMPCR--- 326

Query: 386 LLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRM 445
             ++     ++  Y + G I  A   F     RD  SW  +I GY + G  E+AL  F  
Sbjct: 327 --NISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVE 384

Query: 446 MLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYG 486
           +  +G   +  TF   LS C+ +  +E GK+ H  ++K  YG
Sbjct: 385 IKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYG 426



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 116/262 (44%), Gaps = 41/262 (15%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M++A+ +F+SMP  N+ SWN ++ GY + GD  +    F    DM  +    S + ++ G
Sbjct: 313 MDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFF----DMMPQRDCVSWAAIIAG 368

Query: 61  FANSGY-----------------------------------IKAGQVVHAMAIRLGCALD 85
           +A SG+                                   ++ G+ +H  A+++G    
Sbjct: 369 YAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTG 428

Query: 86  KFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRE 145
            F+  +L+ MY KCG  D A   F  I++ DVV+W  ++    + G  ++A  +F  M+ 
Sbjct: 429 CFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKT 488

Query: 146 SSVKPNQFVLTSLVRATTETG-DQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVS 204
           + VKP++  +  ++ A + TG   R  E  +++   YG    +     ++ +    GR+ 
Sbjct: 489 AGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLE 548

Query: 205 YGSRVFEAIAHQD-SVSWNALF 225
               +   +  Q  + SW AL 
Sbjct: 549 EAQDLIRNMPFQPGAASWGALL 570



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 38/133 (28%)

Query: 467 HMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVW 526
           + GL++ G ++F  + + Y +TPT KH+ CMID+LGR  +  E                 
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE----------------- 818

Query: 527 ENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQ 586
             LLGA   HGN EL EK A+   ++ P+                     SG+ + +   
Sbjct: 819 GALLGASRIHGNTELGEKAAQMFFKMGPQN--------------------SGI-SKMRDV 857

Query: 587 GIKKEPSCSWIEV 599
           G++K P  SW EV
Sbjct: 858 GVQKVPGYSWFEV 870


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 190/597 (31%), Positives = 298/597 (49%), Gaps = 26/597 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A  VF +MP  + VS+NA+++GY  +       +LF  M + +     FS + +L     
Sbjct: 68  ALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDL----FSWNVML----- 118

Query: 64  SGYIKAGQVVHAMAI-RLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           +GY++  ++  A  +  L    D     SL+  Y++ G  D A +VF  + + + ++W  
Sbjct: 119 TGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNG 178

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           ++      G  +EA  +F    +  +     ++   VR   + GD R       V     
Sbjct: 179 LLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVR-KKKLGDARWLFDKMPV----- 232

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
              D +  N ++S Y + G +S   R+F+    +D  +W A+ S +      D+    F 
Sbjct: 233 --RDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFD 290

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M  K    N  ++  ++        +   ++L       ++        +++  Y + G
Sbjct: 291 EMPEK----NEVSYNAMIAGYVQTKKMDIARELFESMPCRNISS----WNTMITGYGQIG 342

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            +  A   FD +  +D  ++ AII  YAQ+G  E AL  F +++ +G   N  T    L+
Sbjct: 343 DIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALS 402

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            C+ +A L  G+ +H  AVK G+    FV  AL+AMY KCGSID+A   F+G   +D  S
Sbjct: 403 TCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVS 462

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN M+ GY +HG G +AL  F  M   G  PDEIT V VLSACSH GL++ G ++F S+ 
Sbjct: 463 WNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMT 522

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           K YG+ PT KH+ CMID+LGRAG+  E ++ I      P A  W  LLGA   HGN EL 
Sbjct: 523 KDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELG 582

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           EK AE + ++EP+    YV  S++ A  GRW D   +R+ +   G++K P  SW+EV
Sbjct: 583 EKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEV 639



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 126/509 (24%), Positives = 224/509 (44%), Gaps = 80/509 (15%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAES---GDGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           LA+ +F  MPE ++ SWN +L GY  +   GD +++  L    KD+       S +++L 
Sbjct: 98  LARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPE-KDV------VSWNSLLS 150

Query: 60  GFANSGYIKAGQ--------------------VVHAMAIRLGCALDKFLSCSLVDMYS-- 97
           G+A +GY+   +                     VH   I   C L  F S S  D+ S  
Sbjct: 151 GYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLL--FESKSDWDLISWN 208

Query: 98  --------KCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK 149
                   K  L D A  +F ++   D ++W  +I+   Q G   +A ++F+   ES  +
Sbjct: 209 CLMGGFVRKKKLGD-ARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFD---ESPTR 264

Query: 150 PNQFVLTSLVRATTETG------------DQRCGESIHAVICKYG-----------FES- 185
            + F  T++V    + G             ++   S +A+I  Y            FES 
Sbjct: 265 -DVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESM 323

Query: 186 ---DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
              +    N +++ Y + G ++   + F+ +  +D VSW A+ + +      ++ L +F 
Sbjct: 324 PCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFV 383

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           ++   G   N  TF   L  C+ ++ +  GKQ+H   +K        VG +L+ MY K G
Sbjct: 384 EIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCG 443

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            +++A   F+ +  KD+ ++  ++  YA+ G    AL  F  M+  G+K +E T+   L+
Sbjct: 444 SIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLS 503

Query: 363 GCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD-T 420
            CS    L  G    +S+    G +      T ++ +  + G +++A+ + +    +   
Sbjct: 504 ACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGA 563

Query: 421 ASWNMMIGGYVKHG---LGEKALE-AFRM 445
           ASW  ++G    HG   LGEKA E  F+M
Sbjct: 564 ASWGALLGASRIHGNTELGEKAAEMVFKM 592



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 171/402 (42%), Gaps = 44/402 (10%)

Query: 111 RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLM-RESSVKPNQFVLTSLVRATTETGDQR 169
           R+KDPD++ W   I+   + G C  A  +FN M R SSV  N  + +  +R +     + 
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMI-SGYLRNSKFNLARN 101

Query: 170 CGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQ 229
             + +         E D    N +++ Y+ N R+    R+F+ +  +D VSWN+L S + 
Sbjct: 102 LFDQMP--------ERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYA 153

Query: 230 DYESPDQGLRIFYQMLLKG---FKPNMCTFI---VILKAC---SSLSDV----------G 270
                D+   +F  M  K    +   +  ++    I +AC    S SD           G
Sbjct: 154 QNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGG 213

Query: 271 FGKQLHAHTIKHSLDG----NHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
           F ++      +   D     + +   +++  Y + G L  A   FD    +D+F +TA++
Sbjct: 214 FVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMV 273

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR-LLHSIAVKTGH 385
           + Y Q G  + A   F +M     + NE +  + + G      +   R L  S+  +   
Sbjct: 274 SGYVQNGMLDEAKTFFDEM----PEKNEVSYNAMIAGYVQTKKMDIARELFESMPCR--- 326

Query: 386 LLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRM 445
             ++     ++  Y + G I  A   F     RD  SW  +I GY + G  E+AL  F  
Sbjct: 327 --NISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVE 384

Query: 446 MLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYG 486
           +  +G   +  TF   LS C+ +  +E GK+ H  ++K  YG
Sbjct: 385 IKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYG 426



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 116/262 (44%), Gaps = 41/262 (15%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M++A+ +F+SMP  N+ SWN ++ GY + GD  +    F    DM  +    S + ++ G
Sbjct: 313 MDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFF----DMMPQRDCVSWAAIIAG 368

Query: 61  FANSGY-----------------------------------IKAGQVVHAMAIRLGCALD 85
           +A SG+                                   ++ G+ +H  A+++G    
Sbjct: 369 YAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTG 428

Query: 86  KFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRE 145
            F+  +L+ MY KCG  D A   F  I++ DVV+W  ++    + G  ++A  +F  M+ 
Sbjct: 429 CFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKT 488

Query: 146 SSVKPNQFVLTSLVRATTETG-DQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVS 204
           + VKP++  +  ++ A + TG   R  E  +++   YG    +     ++ +    GR+ 
Sbjct: 489 AGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLE 548

Query: 205 YGSRVFEAIAHQD-SVSWNALF 225
               +   +  Q  + SW AL 
Sbjct: 549 EAQDLIRNMPFQPGAASWGALL 570


>gi|225438700|ref|XP_002277701.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial [Vitis vinifera]
          Length = 1008

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 176/595 (29%), Positives = 315/595 (52%), Gaps = 4/595 (0%)

Query: 4    AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
            A  +F  MP  N++SWN++++GY  +G  +  M  FC M+         S+  +L   + 
Sbjct: 411  ADFIFYQMPRRNLLSWNSMISGYGHNGLWEASMDAFCDMQFEGFDPDAISIVNILSACSK 470

Query: 64   SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
               I  G+  HA + R     +  +S +L+  YS CG   ++ K+F ++   + ++W  +
Sbjct: 471  LEAILLGKAAHAFSFRKEFDSNLNISNALLAFYSDCGKLSSSFKLFQKMPLRNAISWNTL 530

Query: 124  ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
            I+     G  ++A  + + M++  ++ +   L S++       +   G ++H    K GF
Sbjct: 531  ISGCVHNGDTKKAVALLHKMQQEKMELDLVTLISIIPICRVAENLIQGMTLHGYAIKTGF 590

Query: 184  ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
              D  + NAL+SMY   G ++ G  +FE +  +  VSWNAL + ++ +   ++ +  F Q
Sbjct: 591  ACDVSLVNALISMYFNCGDINAGKFLFEVMPWRSIVSWNALITGYRFHYLQNEVMASFCQ 650

Query: 244  MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
            M+ +G KPN  T + +L +C +L     GK +HA  ++  +     + TSL+ MY +   
Sbjct: 651  MIREGQKPNYVTLLNLLPSCRTLLQ---GKSIHAFAVRTGVIVETPIITSLISMYARFEN 707

Query: 304  LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
            +      F+    +D+  + AI++ Y Q   A+ ++  F ++    ++ +  T  S ++ 
Sbjct: 708  INSFIFLFEMGGKEDIALWNAIMSVYVQTKNAKESVTFFCELLHARVEPDYITFLSLISA 767

Query: 364  CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
            C  +++L     + +  ++ G    + +S AL+ ++A+CG+I  A+ +F+G + +D  SW
Sbjct: 768  CVQLSSLNLSNSVMAYVIQKGFDKHIVISNALIDLFARCGNISIAKKIFEGLSSKDAVSW 827

Query: 424  NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
            + MI GY  HG  E AL     M   G  PD IT+  VLSACSH G I++G   F+S+ +
Sbjct: 828  STMINGYGLHGDSEAALALLSQMRLSGMKPDGITYASVLSACSHGGFIDQGWMIFNSMVE 887

Query: 484  IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
              G+   ++H+ACM+D+LGR G+  E  +F+ +    P+  + E+LLGAC  HGN++L E
Sbjct: 888  -EGVPRRMEHYACMVDLLGRTGQLNEAYDFVEKLPCKPSVSLLESLLGACIIHGNVKLGE 946

Query: 544  KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
            K +  L EL+PK   +YV   +I A  GRW D + VR+ +  + ++K P  S +E
Sbjct: 947  KISSLLFELDPKNSGSYVMLYNIYAAAGRWMDANRVRSDMEERQLRKIPGFSLVE 1001



 Score =  228 bits (580), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 126/464 (27%), Positives = 230/464 (49%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           ELA   F+++ + +V   N ++    + G  + V+ ++   + +      F+   V+K  
Sbjct: 106 ELALSAFEAIEKPSVFLQNLMIRRLCDHGLFEDVLCVYLKCRVLGCPSDDFTFPFVIKAC 165

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
              G +   + VH + +R     +  +  +LVD Y+K G    A  V  +I  PD+V W 
Sbjct: 166 TALGAVWIAEGVHCIVLRTSFEENLVIQTALVDFYAKTGRMVKARLVLDKISQPDLVTWN 225

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           A+I+     G  +E  ++   + E  +KPN     S++   T       G+SIH  + K 
Sbjct: 226 ALISGYSLNGFDKEVFEVLRQINEMGLKPNVSTFASIIPLCTRMKCLDIGKSIHGFVVKS 285

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           GF SD  +  AL+SMY   G +     +F++ A ++ V WN++ S +   +   +  ++F
Sbjct: 286 GFSSDEFLTPALISMYAGGGNLFIARDLFDSAAEKNVVIWNSMISAYAQNQKSSEAFKMF 345

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            QML    +PN+ TF+ I+  C + ++  +GK LHAH +K+ LD    V T+L+ MY K 
Sbjct: 346 QQMLKANMQPNVVTFVSIIPCCENSANFWYGKSLHAHVMKYRLDSQLSVATALLSMYAKL 405

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G L  A   F  +  ++L ++ ++I+ Y   G  E ++  F  M+ EG   +  ++ + L
Sbjct: 406 GDLNSADFIFYQMPRRNLLSWNSMISGYGHNGLWEASMDAFCDMQFEGFDPDAISIVNIL 465

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
           + CS +  +  G+  H+ + +     ++ +S AL+A Y+ CG +  +  +F+   LR+  
Sbjct: 466 SACSKLEAILLGKAAHAFSFRKEFDSNLNISNALLAFYSDCGKLSSSFKLFQKMPLRNAI 525

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSAC 465
           SWN +I G V +G  +KA+     M  E    D +T + ++  C
Sbjct: 526 SWNTLISGCVHNGDTKKAVALLHKMQQEKMELDLVTLISIIPIC 569



 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 134/514 (26%), Positives = 252/514 (49%), Gaps = 7/514 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           M  A+ V   + + ++V+WNAL++GY+ +G  ++V  +   + +M  K +  + ++++  
Sbjct: 206 MVKARLVLDKISQPDLVTWNALISGYSLNGFDKEVFEVLRQINEMGLKPNVSTFASIIPL 265

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 +  G+ +H   ++ G + D+FL+ +L+ MY+  G    A  +F    + +VV W
Sbjct: 266 CTRMKCLDIGKSIHGFVVKSGFSSDEFLTPALISMYAGGGNLFIARDLFDSAAEKNVVIW 325

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I+   Q     EA K+F  M +++++PN     S++     + +   G+S+HA + K
Sbjct: 326 NSMISAYAQNQKSSEAFKMFQQMLKANMQPNVVTFVSIIPCCENSANFWYGKSLHAHVMK 385

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           Y  +S   V  AL+SMY + G ++    +F  +  ++ +SWN++ S +      +  +  
Sbjct: 386 YRLDSQLSVATALLSMYAKLGDLNSADFIFYQMPRRNLLSWNSMISGYGHNGLWEASMDA 445

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  M  +GF P+  + + IL ACS L  +  GK  HA + +   D N  +  +L+  Y  
Sbjct: 446 FCDMQFEGFDPDAISIVNILSACSKLEAILLGKAAHAFSFRKEFDSNLNISNALLAFYSD 505

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L  +   F  +  ++  ++  +I+     G+ + A+    KM+ E ++ +  TL S 
Sbjct: 506 CGKLSSSFKLFQKMPLRNAISWNTLISGCVHNGDTKKAVALLHKMQQEKMELDLVTLISI 565

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           +  C     L  G  LH  A+KTG   D+ +  AL++MY  CG I+  + +F+    R  
Sbjct: 566 IPICRVAENLIQGMTLHGYAIKTGFACDVSLVNALISMYFNCGDINAGKFLFEVMPWRSI 625

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            SWN +I GY  H L  + + +F  M+ EG  P+ +T + +L +C  +    +GK    S
Sbjct: 626 VSWNALITGYRFHYLQNEVMASFCQMIREGQKPNYVTLLNLLPSCRTL---LQGK----S 678

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFI 514
           I      T  I     +  ++    +F  I +FI
Sbjct: 679 IHAFAVRTGVIVETPIITSLISMYARFENINSFI 712



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 136/465 (29%), Positives = 220/465 (47%), Gaps = 10/465 (2%)

Query: 100 GLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLV 159
           G  + AL  F  I+ P V     +I  L   G  ++   ++   R      + F    ++
Sbjct: 103 GAPELALSAFEAIEKPSVFLQNLMIRRLCDHGLFEDVLCVYLKCRVLGCPSDDFTFPFVI 162

Query: 160 RATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSV 219
           +A T  G     E +H ++ +  FE + ++  ALV  Y + GR+     V + I+  D V
Sbjct: 163 KACTALGAVWIAEGVHCIVLRTSFEENLVIQTALVDFYAKTGRMVKARLVLDKISQPDLV 222

Query: 220 SWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHT 279
           +WNAL S +       +   +  Q+   G KPN+ TF  I+  C+ +  +  GK +H   
Sbjct: 223 TWNALISGYSLNGFDKEVFEVLRQINEMGLKPNVSTFASIIPLCTRMKCLDIGKSIHGFV 282

Query: 280 IKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMAL 339
           +K     +  +  +L+ MY   G L  A   FDS A K++  + ++I++YAQ  ++  A 
Sbjct: 283 VKSGFSSDEFLTPALISMYAGGGNLFIARDLFDSAAEKNVVIWNSMISAYAQNQKSSEAF 342

Query: 340 KCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMY 399
           K F++M    ++ N  T  S +  C   A    G+ LH+  +K      + V+TAL++MY
Sbjct: 343 KMFQQMLKANMQPNVVTFVSIIPCCENSANFWYGKSLHAHVMKYRLDSQLSVATALLSMY 402

Query: 400 AKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFV 459
           AK G ++ A+ +F     R+  SWN MI GY  +GL E +++AF  M  EG+ PD I+ V
Sbjct: 403 AKLGDLNSADFIFYQMPRRNLLSWNSMISGYGHNGLWEASMDAFCDMQFEGFDPDAISIV 462

Query: 460 VVLSACSHMGLIEEGK-KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETK 518
            +LSACS +  I  GK  H  S +K +     I +   ++      GK +       +  
Sbjct: 463 NILSACSKLEAILLGKAAHAFSFRKEFDSNLNISN--ALLAFYSDCGKLSSSFKLFQKMP 520

Query: 519 LTPNALVWENLLGACSWHGNIELDEKDAEKLLE--LEPKMESNYV 561
           L  NA+ W  L+  C  +G    D K A  LL    + KME + V
Sbjct: 521 LR-NAISWNTLISGCVHNG----DTKKAVALLHKMQQEKMELDLV 560



 Score = 45.8 bits (107), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 39/197 (19%), Positives = 79/197 (40%), Gaps = 38/197 (19%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + +AK++F+ +   + VSW+ ++NGY   GD +  + L   M+    K    + ++VL  
Sbjct: 809 ISIAKKIFEGLSSKDAVSWSTMINGYGLHGDSEAALALLSQMRLSGMKPDGITYASVLSA 868

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            ++ G+I  G ++    +  G          +VD+  + G  + A               
Sbjct: 869 CSHGGFIDQGWMIFNSMVEEGVPRRMEHYACMVDLLGRTGQLNEA--------------- 913

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
                              ++ + +   KP+  +L SL+ A    G+ + GE I +++  
Sbjct: 914 -------------------YDFVEKLPCKPSVSLLESLLGACIIHGNVKLGEKISSLL-- 952

Query: 181 YGFESDTLVGNALVSMY 197
             FE D     + V +Y
Sbjct: 953 --FELDPKNSGSYVMLY 967


>gi|359492768|ref|XP_002279149.2| PREDICTED: pentatricopeptide repeat-containing protein At1g43980,
           mitochondrial-like [Vitis vinifera]
          Length = 665

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 183/563 (32%), Positives = 291/563 (51%), Gaps = 37/563 (6%)

Query: 70  GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDP-------------- 115
            + VHA  I++G     FL    +D+YS+ G  +++L+VF  I D               
Sbjct: 56  AKFVHAQLIKVGFNTHTFLGNRCLDLYSQLGTGNDSLRVFEDIIDKNLISWNIFLKAFVR 115

Query: 116 -----------------DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSL 158
                            DVV+W  +I+     G   +A + F+ M+++ ++P+ F  ++L
Sbjct: 116 FGELERARDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTL 175

Query: 159 VRATTETGDQRC-GESIHAVICKYGFE-SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ 216
           +   +      C G+ IHA + + G + S+ +VGN+L+ MY + G V Y   VF  +   
Sbjct: 176 LSFVSSA----CRGKQIHASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYAFGVFITMEEL 231

Query: 217 DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLH 276
           D  SWN+L          +  LR F  M   G+ P+  T   ++  CS+L D+  G+Q+ 
Sbjct: 232 DITSWNSLIWSCGKSGYQNLALRQFVLMRSVGYSPDQFTVSTVITVCSNLQDLEKGEQIF 291

Query: 277 AHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAE 336
           A  I+     N +V ++ +D++ K   LED+   F+ +   D     A+I+SYA  G  E
Sbjct: 292 ALCIRVGFLSNSIVSSASIDLFSKCNRLEDSVRVFEEIYQWDSVLCNAMISSYAWHGFGE 351

Query: 337 MALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALV 396
            AL+ F     E ++  EFTL+  L+  S +  +  G  +HS+ VK+G   D+ V+++LV
Sbjct: 352 NALQLFVLTLRENLRPTEFTLSIVLSAVSILLPVDQGSQIHSLVVKSGLESDVIVASSLV 411

Query: 397 AMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI 456
            MYAK G ID A   F     RD  SWN MI G   +G   KALE F+ +L  G  PDEI
Sbjct: 412 EMYAKFGLIDSAMKTFAKIGARDLISWNTMIMGLAYNGRVSKALEIFKELLIGGPPPDEI 471

Query: 457 TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE 516
           T   VL AC+  GL++EG   FSS++K YG+ P I+H+AC++D++ R GK  E  + +  
Sbjct: 472 TLAGVLLACNVGGLVDEGLSIFSSMEKEYGVIPAIEHYACIVDMMSRGGKLKEAMDIVEL 531

Query: 517 TKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDF 576
               P+ L+W +LL AC  +G++   E+ AE+++ELEP+    Y+  +     +GRW   
Sbjct: 532 MPHEPSGLIWGSLLCACEIYGDLRFTERVAERVMELEPQSSLPYLVLAQAYEMRGRWESL 591

Query: 577 SGVRALLSSQGIKKEPSCSWIEV 599
             VR  +  +G++K   CSWI +
Sbjct: 592 VRVRRAMKEKGVRKVIGCSWIGI 614



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 190/366 (51%), Gaps = 4/366 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ VF  MP+ +VVSWN +++GY   G        F  M+    + S F+ ST+L  
Sbjct: 119 LERARDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLLS- 177

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFL-SCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           F +S     G+ +HA  IR G  L   +   SL+ MY K G+ D A  VF  +++ D+ +
Sbjct: 178 FVSSAC--RGKQIHASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYAFGVFITMEELDITS 235

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W ++I    + G    A + F LMR     P+QF +++++   +   D   GE I A+  
Sbjct: 236 WNSLIWSCGKSGYQNLALRQFVLMRSVGYSPDQFTVSTVITVCSNLQDLEKGEQIFALCI 295

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           + GF S+++V +A + ++ +  R+    RVFE I   DSV  NA+ S +  +   +  L+
Sbjct: 296 RVGFLSNSIVSSASIDLFSKCNRLEDSVRVFEEIYQWDSVLCNAMISSYAWHGFGENALQ 355

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F   L +  +P   T  ++L A S L  V  G Q+H+  +K  L+ + +V +SLV+MY 
Sbjct: 356 LFVLTLRENLRPTEFTLSIVLSAVSILLPVDQGSQIHSLVVKSGLESDVIVASSLVEMYA 415

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G ++ A   F  +  +DL ++  +I   A  G    AL+ F+++ + G   +E TLA 
Sbjct: 416 KFGLIDSAMKTFAKIGARDLISWNTMIMGLAYNGRVSKALEIFKELLIGGPPPDEITLAG 475

Query: 360 CLNGCS 365
            L  C+
Sbjct: 476 VLLACN 481



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 143/311 (45%), Gaps = 37/311 (11%)

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC--------------- 303
           +++ C  L  + + K +HA  IK   + +  +G   +D+Y + G                
Sbjct: 43  LIEHCFLLKSLDYAKFVHAQLIKVGFNTHTFLGNRCLDLYSQLGTGNDSLRVFEDIIDKN 102

Query: 304 ----------------LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL 347
                           LE A   FD +  +D+ ++  +I+ Y   G  + A + F +M+ 
Sbjct: 103 LISWNIFLKAFVRFGELERARDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQK 162

Query: 348 EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG-HLLDMFVSTALVAMYAKCGSID 406
            GI+ + FT ++ L   S V++   G+ +H+  ++ G  L ++ V  +L+ MY K G +D
Sbjct: 163 AGIRPSGFTYSTLL---SFVSSACRGKQIHASMIRNGVDLSNVVVGNSLIGMYGKFGVVD 219

Query: 407 DAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
            A  VF      D  SWN +I    K G    AL  F +M   GY PD+ T   V++ CS
Sbjct: 220 YAFGVFITMEELDITSWNSLIWSCGKSGYQNLALRQFVLMRSVGYSPDQFTVSTVITVCS 279

Query: 467 HMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVW 526
           ++  +E+G++ F+   ++  ++ +I   A  ID+  +  +  E    + E     ++++ 
Sbjct: 280 NLQDLEKGEQIFALCIRVGFLSNSIVSSAS-IDLFSKCNRL-EDSVRVFEEIYQWDSVLC 337

Query: 527 ENLLGACSWHG 537
             ++ + +WHG
Sbjct: 338 NAMISSYAWHG 348



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 86/175 (49%), Gaps = 6/175 (3%)

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           ++ +  C  + +L   + +H+  +K G     F+    + +Y++ G+ +D+  VF+    
Sbjct: 41  SNLIEHCFLLKSLDYAKFVHAQLIKVGFNTHTFLGNRCLDLYSQLGTGNDSLRVFEDIID 100

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           ++  SWN+ +  +V+ G  E+A + F    DE    D +++  ++S     GL ++  + 
Sbjct: 101 KNLISWNIFLKAFVRFGELERARDVF----DEMPKRDVVSWNTMISGYVSFGLFDDAFRF 156

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIE-NFITETKLTPNALVWENLLG 531
           FS ++K  GI P+   ++ ++  +  A +  +I  + I       N +V  +L+G
Sbjct: 157 FSEMQKA-GIRPSGFTYSTLLSFVSSACRGKQIHASMIRNGVDLSNVVVGNSLIG 210


>gi|4049345|emb|CAA22570.1| putative protein [Arabidopsis thaliana]
 gi|7270147|emb|CAB79960.1| putative protein [Arabidopsis thaliana]
          Length = 688

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 179/596 (30%), Positives = 309/596 (51%), Gaps = 12/596 (2%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           +F+++ + +VVSWN +L+G+    D Q  ++    MK     F  F+ ST L     S  
Sbjct: 58  IFENLVDPDVVSWNTILSGF---DDNQIALNFVVRMKSAGVVFDAFTYSTALSFCVGSEG 114

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
              G  + +  ++ G   D  +  S + MYS+ G    A +VF  +   D+++W ++++ 
Sbjct: 115 FLLGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSG 174

Query: 127 LDQQGCCQ-EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
           L Q+G    EA  IF  M    V+ +    TS++       D +    IH +  K G+ES
Sbjct: 175 LSQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYES 234

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
              VGN L+S Y + G +     VF  ++ ++ VSW  + S      + D  + IF  M 
Sbjct: 235 LLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMIS-----SNKDDAVSIFLNMR 289

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
             G  PN  TF+ ++ A      +  G ++H   IK        VG S + +Y K   LE
Sbjct: 290 FDGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEALE 349

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
           DA  AF+ +  +++ ++ A+I+ +AQ G +  ALK F     E +  NE+T  S LN  +
Sbjct: 350 DAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLSAAAETMP-NEYTFGSVLNAIA 408

Query: 366 PVATLA--NGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
               ++   G+  H+  +K G      VS+AL+ MYAK G+ID++E VF   + ++   W
Sbjct: 409 FAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNIDESEKVFNEMSQKNQFVW 468

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
             +I  Y  HG  E  +  F  M+ E   PD +TF+ VL+AC+  G++++G + F+ + +
Sbjct: 469 TSIISAYSSHGDFETVMNLFHKMIKENVAPDLVTFLSVLTACNRKGMVDKGYEIFNMMIE 528

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
           +Y + P+ +H++CM+D+LGRAG+  E E  ++E    P   + +++LG+C  HGN+++  
Sbjct: 529 VYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPGESMLQSMLGSCRLHGNVKMGA 588

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           K AE  +E++P++  +YV   +I A +  W+  + +R  +  + + KE   SWI+V
Sbjct: 589 KVAELAMEMKPELSGSYVQMYNIYAEKEEWDKAAEIRKAMRKKNVSKEAGFSWIDV 644



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 136/502 (27%), Positives = 241/502 (48%), Gaps = 21/502 (4%)

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
           G +K G  +H  +   G      +S +++ MY K G  DNAL +F  + DPDVV+W  I+
Sbjct: 15  GDLKRGCQIHGFSTTSGFTSFVCVSNAVMGMYRKAGRFDNALCIFENLVDPDVVSWNTIL 74

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
           +  D     Q A      M+ + V  + F  ++ +     +     G  + + + K G E
Sbjct: 75  SGFDDN---QIALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFLLGLQLQSTVVKTGLE 131

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF-QDYESPDQGLRIFYQ 243
           SD +VGN+ ++MY  +G      RVF+ ++ +D +SWN+L S   Q+     + + IF  
Sbjct: 132 SDLVVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLSQEGTFGFEAVVIFRD 191

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M+ +G + +  +F  ++  C   +D+   +Q+H   IK   +    VG  L+  Y K G 
Sbjct: 192 MMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYESLLEVGNILMSRYSKCGV 251

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           LE     F  ++ +++ ++T +I+S       + A+  F  MR +G+  NE T    +N 
Sbjct: 252 LEAVKSVFHQMSERNVVSWTTMISS-----NKDDAVSIFLNMRFDGVYPNEVTFVGLINA 306

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
                 +  G  +H + +KTG + +  V  + + +YAK  +++DA+  F+    R+  SW
Sbjct: 307 VKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEALEDAKKAFEDITFREIISW 366

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI--EEGKKHFSSI 481
           N MI G+ ++G   +AL+ F     E  +P+E TF  VL+A +    I  ++G++  + +
Sbjct: 367 NAMISGFAQNGFSHEALKMFLSAAAE-TMPNEYTFGSVLNAIAFAEDISVKQGQRCHAHL 425

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
            K+ G+       + ++D+  + G   E E    E     N  VW +++ A S HG    
Sbjct: 426 LKL-GLNSCPVVSSALLDMYAKRGNIDESEKVFNEMS-QKNQFVWTSIISAYSSHG---- 479

Query: 542 DEKDAEKLLELEPKMESNYVFP 563
              D E ++ L  KM    V P
Sbjct: 480 ---DFETVMNLFHKMIKENVAP 498



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/410 (26%), Positives = 204/410 (49%), Gaps = 10/410 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGD-GQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           A+RVF  M   +++SWN+LL+G ++ G  G + + +F  M     +    S ++V+    
Sbjct: 153 ARRVFDEMSFKDMISWNSLLSGLSQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCC 212

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           +   +K  + +H + I+ G      +   L+  YSKCG+ +    VF+++ + +VV+W  
Sbjct: 213 HETDLKLARQIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTT 272

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I+         +A  IF  MR   V PN+     L+ A       + G  IH +  K G
Sbjct: 273 MISSNK-----DDAVSIFLNMRFDGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTG 327

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F S+  VGN+ +++Y +   +    + FE I  ++ +SWNA+ S F       + L++F 
Sbjct: 328 FVSEPSVGNSFITLYAKFEALEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFL 387

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGF--GKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
               +   PN  TF  +L A +   D+    G++ HAH +K  L+   VV ++L+DMY K
Sbjct: 388 SAAAETM-PNEYTFGSVLNAIAFAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAK 446

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G ++++   F+ ++ K+ F +T+II++Y+  G+ E  +  F KM  E +  +  T  S 
Sbjct: 447 RGNIDESEKVFNEMSQKNQFVWTSIISAYSSHGDFETVMNLFHKMIKENVAPDLVTFLSV 506

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVS-TALVAMYAKCGSIDDAE 409
           L  C+    +  G  + ++ ++  +L       + +V M  + G + +AE
Sbjct: 507 LTACNRKGMVDKGYEIFNMMIEVYNLEPSHEHYSCMVDMLGRAGRLKEAE 556



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 155/310 (50%), Gaps = 9/310 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E  K VF  M E NVVSW  ++     S +    + +F +M+      ++ +   ++  
Sbjct: 252 LEAVKSVFHQMSERNVVSWTTMI-----SSNKDDAVSIFLNMRFDGVYPNEVTFVGLINA 306

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              +  IK G  +H + I+ G   +  +  S + +Y+K    ++A K F  I   ++++W
Sbjct: 307 VKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEALEDAKKAFEDITFREIISW 366

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD--QRCGESIHAVI 178
            A+I+   Q G   EA K+F L   +   PN++   S++ A     D   + G+  HA +
Sbjct: 367 NAMISGFAQNGFSHEALKMF-LSAAAETMPNEYTFGSVLNAIAFAEDISVKQGQRCHAHL 425

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K G  S  +V +AL+ MY + G +    +VF  ++ ++   W ++ S +  +   +  +
Sbjct: 426 LKLGLNSCPVVSSALLDMYAKRGNIDESEKVFNEMSQKNQFVWTSIISAYSSHGDFETVM 485

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK-HSLDGNHVVGTSLVDM 297
            +F++M+ +   P++ TF+ +L AC+    V  G ++    I+ ++L+ +H   + +VDM
Sbjct: 486 NLFHKMIKENVAPDLVTFLSVLTACNRKGMVDKGYEIFNMMIEVYNLEPSHEHYSCMVDM 545

Query: 298 YDKSGCLEDA 307
             ++G L++A
Sbjct: 546 LGRAGRLKEA 555


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 167/503 (33%), Positives = 282/503 (56%), Gaps = 20/503 (3%)

Query: 105 ALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTE 164
           A+++ YRI+ P    +  ++    +Q   +E  ++   ++ S      ++   L+    +
Sbjct: 107 AVQLLYRIEKPYASIYLTLLKFCLKQRALKEGKQVHAHIKTSG-SIGLYISNRLLDMYAK 165

Query: 165 TG-----DQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSV 219
            G     ++   E +H  +C +         N ++S Y++ G       +F+ + ++D+ 
Sbjct: 166 CGSLVDAEKVFDEMVHRDLCSW---------NIMISGYVKGGNFEKARNLFDKMPNRDNF 216

Query: 220 SWNALFSRFQDYESPDQGLRIFYQMLLKGF-KPNMCTFIVILKACSSLSDVGFGKQLHAH 278
           SW A+ S    +  P++ L ++  M    + K N CT    L A +++  +  GK++H H
Sbjct: 217 SWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGH 276

Query: 279 TIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMA 338
            ++  LD + VV  SL+DMY K G +E+A   FD +  +D+ ++T +I +Y + G  E  
Sbjct: 277 IMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEG 336

Query: 339 LKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS--TALV 396
              FR +    I  N+FT A  LN C+ +A    G+ +H+  V+ G   D F S  +ALV
Sbjct: 337 FALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVG--FDSFSSAASALV 394

Query: 397 AMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEI 456
            MY+KCG I++A++VF+     D  SW  ++ GY +HG  +KAL  F ++L  G  PD I
Sbjct: 395 HMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGI 454

Query: 457 TFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITE 516
            F+ VLSAC+H GL+++G ++F SIK+ +G+T TI H+AC+ID+L RAG+FTE E+ I E
Sbjct: 455 AFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINE 514

Query: 517 TKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDF 576
             + P+  +W  LLG C  HGN+EL ++ A+ L E+EP+  + YV  ++I A+ G   + 
Sbjct: 515 MPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPENPATYVTLANIYASAGMRAEE 574

Query: 577 SGVRALLSSQGIKKEPSCSWIEV 599
           + +R  + S+GI K+P  SWIE+
Sbjct: 575 ANIRETMDSRGIVKKPGMSWIEI 597



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 115/438 (26%), Positives = 203/438 (46%), Gaps = 36/438 (8%)

Query: 45  MEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADN 104
           +EK ++   L T+LK       +K G+ VHA  I+   ++  ++S  L+DMY+KCG   +
Sbjct: 114 IEKPYASIYL-TLLKFCLKQRALKEGKQVHA-HIKTSGSIGLYISNRLLDMYAKCGSLVD 171

Query: 105 ALKV-------------------------------FYRIKDPDVVAWGAIITCLDQQGCC 133
           A KV                               F ++ + D  +W AII+   Q    
Sbjct: 172 AEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTAIISGCVQHNRP 231

Query: 134 QEAAKIFNLMRESSV-KPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNA 192
           +EA +++ LM++    K N+  ++S + A+        G+ IH  I + G +SD +V  +
Sbjct: 232 EEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCS 291

Query: 193 LVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPN 252
           L+ MY + G +     +F+ +  +D VSW  +   +      ++G  +F  ++     PN
Sbjct: 292 LLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPN 351

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
             TF  +L AC+ L+    GKQ+HA+ ++   D      ++LV MY K G +E+A   F+
Sbjct: 352 DFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFE 411

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
            L   DLF++T+++  YAQ G+ + AL  F  +   G K +       L+ C+    +  
Sbjct: 412 ILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDK 471

Query: 373 G-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DTASWNMMIGGY 430
           G    HSI  K G    +     ++ + A+ G   +AE++     ++ D   W  ++GG 
Sbjct: 472 GLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGC 531

Query: 431 VKHGLGEKALEAFRMMLD 448
             HG  E A  A + + +
Sbjct: 532 RIHGNLELAKRAAKSLFE 549



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 171/350 (48%), Gaps = 9/350 (2%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGF 61
           E A+ +F  MP  +  SW A+++G  +    ++ + L+  M+  +  +SK +  T+    
Sbjct: 201 EKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKHD--YSKSNKCTISSAL 258

Query: 62  ANSGYIKA---GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
           A S  I +   G+ +H   +R+G   D+ + CSL+DMY KCG  + A  +F ++++ DVV
Sbjct: 259 AASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVV 318

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
           +W  +I    + G  +E   +F  +  S++ PN F    ++ A  +   +  G+ IHA +
Sbjct: 319 SWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYM 378

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            + GF+S +   +ALV MY + G +     VFE +   D  SW +L   +  +   D+ L
Sbjct: 379 VRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKAL 438

Query: 239 RIFYQMLLKGFKPNMCTFIVILKAC--SSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVD 296
             F  +L  G KP+   FI +L AC  + L D G  +  H+   KH L         ++D
Sbjct: 439 HFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGL-EYFHSIKEKHGLTRTIDHYACIID 497

Query: 297 MYDKSGCLEDAGVAFDSLANK-DLFAYTAIITSYAQAGEAEMALKCFRKM 345
           +  ++G   +A    + +  K D + + A++      G  E+A +  + +
Sbjct: 498 LLARAGQFTEAESIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSL 547



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 161/349 (46%), Gaps = 39/349 (11%)

Query: 224 LFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHS 283
           LF    D       LR   Q+L +  KP    ++ +LK C     +  GKQ+HAH IK S
Sbjct: 90  LFKEAIDILCGQSRLREAVQLLYRIEKPYASIYLTLLKFCLKQRALKEGKQVHAH-IKTS 148

Query: 284 LDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL------------------------ 319
                 +   L+DMY K G L DA   FD + ++DL                        
Sbjct: 149 GSIGLYISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFD 208

Query: 320 -------FAYTAIITSYAQAGEAEMALKCFRKMRLEGI-KSNEFTLASCLNGCSPVATLA 371
                  F++TAII+   Q    E AL+ +R M+     KSN+ T++S L   + + +L 
Sbjct: 209 KMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLH 268

Query: 372 NGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV 431
            G+ +H   ++ G   D  V  +L+ MY KCGSI++A  +F     RD  SW  MI  Y+
Sbjct: 269 MGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYL 328

Query: 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI 491
           K+G  E+    FR +++   +P++ TF  VL+AC+ +   + GK+  + + ++ G     
Sbjct: 329 KNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRV-GFDSFS 387

Query: 492 KHFACMIDILGRAGKFTEIENF--ITETKLTPNALVWENLLGACSWHGN 538
              + ++ +  + G   +IEN   + E    P+   W +LL   + HG 
Sbjct: 388 SAASALVHMYSKCG---DIENAKSVFEILPQPDLFSWTSLLVGYAQHGQ 433



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 105/229 (45%), Gaps = 6/229 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+ +F  M E +VVSW  +++ Y ++G  ++   LF  + +     + F+ + VL  
Sbjct: 302 IEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNA 361

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCS--LVDMYSKCGLADNALKVFYRIKDPDVV 118
            A+      G+ +HA  +R+G   D F S +  LV MYSKCG  +NA  VF  +  PD+ 
Sbjct: 362 CADLAAEDLGKQIHAYMVRVG--FDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDLF 419

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG-ESIHAV 177
           +W +++    Q G   +A   F L+ +S  KP+      ++ A    G    G E  H++
Sbjct: 420 SWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSI 479

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVF-EAIAHQDSVSWNALF 225
             K+G          ++ +    G+ +    +  E     D   W AL 
Sbjct: 480 KEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDKYIWAALL 528


>gi|30689384|ref|NP_194969.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75147159|sp|Q84MA3.1|PP345_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g32430, mitochondrial; Flags: Precursor
 gi|30102674|gb|AAP21255.1| At4g32430 [Arabidopsis thaliana]
 gi|110742925|dbj|BAE99358.1| hypothetical protein [Arabidopsis thaliana]
 gi|332660658|gb|AEE86058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  308 bits (788), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 179/596 (30%), Positives = 309/596 (51%), Gaps = 12/596 (2%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           +F+++ + +VVSWN +L+G+    D Q  ++    MK     F  F+ ST L     S  
Sbjct: 133 IFENLVDPDVVSWNTILSGF---DDNQIALNFVVRMKSAGVVFDAFTYSTALSFCVGSEG 189

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
              G  + +  ++ G   D  +  S + MYS+ G    A +VF  +   D+++W ++++ 
Sbjct: 190 FLLGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSG 249

Query: 127 LDQQGCCQ-EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
           L Q+G    EA  IF  M    V+ +    TS++       D +    IH +  K G+ES
Sbjct: 250 LSQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYES 309

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
              VGN L+S Y + G +     VF  ++ ++ VSW  + S      + D  + IF  M 
Sbjct: 310 LLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMIS-----SNKDDAVSIFLNMR 364

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
             G  PN  TF+ ++ A      +  G ++H   IK        VG S + +Y K   LE
Sbjct: 365 FDGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEALE 424

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
           DA  AF+ +  +++ ++ A+I+ +AQ G +  ALK F     E +  NE+T  S LN  +
Sbjct: 425 DAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLSAAAETMP-NEYTFGSVLNAIA 483

Query: 366 PVATLA--NGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
               ++   G+  H+  +K G      VS+AL+ MYAK G+ID++E VF   + ++   W
Sbjct: 484 FAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNIDESEKVFNEMSQKNQFVW 543

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
             +I  Y  HG  E  +  F  M+ E   PD +TF+ VL+AC+  G++++G + F+ + +
Sbjct: 544 TSIISAYSSHGDFETVMNLFHKMIKENVAPDLVTFLSVLTACNRKGMVDKGYEIFNMMIE 603

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
           +Y + P+ +H++CM+D+LGRAG+  E E  ++E    P   + +++LG+C  HGN+++  
Sbjct: 604 VYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPGESMLQSMLGSCRLHGNVKMGA 663

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           K AE  +E++P++  +YV   +I A +  W+  + +R  +  + + KE   SWI+V
Sbjct: 664 KVAELAMEMKPELSGSYVQMYNIYAEKEEWDKAAEIRKAMRKKNVSKEAGFSWIDV 719



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 136/502 (27%), Positives = 241/502 (48%), Gaps = 21/502 (4%)

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
           G +K G  +H  +   G      +S +++ MY K G  DNAL +F  + DPDVV+W  I+
Sbjct: 90  GDLKRGCQIHGFSTTSGFTSFVCVSNAVMGMYRKAGRFDNALCIFENLVDPDVVSWNTIL 149

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
           +  D     Q A      M+ + V  + F  ++ +     +     G  + + + K G E
Sbjct: 150 SGFDDN---QIALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFLLGLQLQSTVVKTGLE 206

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF-QDYESPDQGLRIFYQ 243
           SD +VGN+ ++MY  +G      RVF+ ++ +D +SWN+L S   Q+     + + IF  
Sbjct: 207 SDLVVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLSQEGTFGFEAVVIFRD 266

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M+ +G + +  +F  ++  C   +D+   +Q+H   IK   +    VG  L+  Y K G 
Sbjct: 267 MMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYESLLEVGNILMSRYSKCGV 326

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           LE     F  ++ +++ ++T +I+S       + A+  F  MR +G+  NE T    +N 
Sbjct: 327 LEAVKSVFHQMSERNVVSWTTMISS-----NKDDAVSIFLNMRFDGVYPNEVTFVGLINA 381

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
                 +  G  +H + +KTG + +  V  + + +YAK  +++DA+  F+    R+  SW
Sbjct: 382 VKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEALEDAKKAFEDITFREIISW 441

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI--EEGKKHFSSI 481
           N MI G+ ++G   +AL+ F     E  +P+E TF  VL+A +    I  ++G++  + +
Sbjct: 442 NAMISGFAQNGFSHEALKMFLSAAAET-MPNEYTFGSVLNAIAFAEDISVKQGQRCHAHL 500

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
            K+ G+       + ++D+  + G   E E    E     N  VW +++ A S HG    
Sbjct: 501 LKL-GLNSCPVVSSALLDMYAKRGNIDESEKVFNEMS-QKNQFVWTSIISAYSSHG---- 554

Query: 542 DEKDAEKLLELEPKMESNYVFP 563
              D E ++ L  KM    V P
Sbjct: 555 ---DFETVMNLFHKMIKENVAP 573



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/412 (26%), Positives = 205/412 (49%), Gaps = 10/412 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGD-GQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           A+RVF  M   +++SWN+LL+G ++ G  G + + +F  M     +    S ++V+    
Sbjct: 228 ARRVFDEMSFKDMISWNSLLSGLSQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCC 287

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           +   +K  + +H + I+ G      +   L+  YSKCG+ +    VF+++ + +VV+W  
Sbjct: 288 HETDLKLARQIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTT 347

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I+         +A  IF  MR   V PN+     L+ A       + G  IH +  K G
Sbjct: 348 MISSNK-----DDAVSIFLNMRFDGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTG 402

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F S+  VGN+ +++Y +   +    + FE I  ++ +SWNA+ S F       + L++F 
Sbjct: 403 FVSEPSVGNSFITLYAKFEALEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFL 462

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGF--GKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
               +   PN  TF  +L A +   D+    G++ HAH +K  L+   VV ++L+DMY K
Sbjct: 463 SAAAETM-PNEYTFGSVLNAIAFAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAK 521

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G ++++   F+ ++ K+ F +T+II++Y+  G+ E  +  F KM  E +  +  T  S 
Sbjct: 522 RGNIDESEKVFNEMSQKNQFVWTSIISAYSSHGDFETVMNLFHKMIKENVAPDLVTFLSV 581

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVS-TALVAMYAKCGSIDDAEAV 411
           L  C+    +  G  + ++ ++  +L       + +V M  + G + +AE +
Sbjct: 582 LTACNRKGMVDKGYEIFNMMIEVYNLEPSHEHYSCMVDMLGRAGRLKEAEEL 633



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 155/310 (50%), Gaps = 9/310 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E  K VF  M E NVVSW  ++     S +    + +F +M+      ++ +   ++  
Sbjct: 327 LEAVKSVFHQMSERNVVSWTTMI-----SSNKDDAVSIFLNMRFDGVYPNEVTFVGLINA 381

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              +  IK G  +H + I+ G   +  +  S + +Y+K    ++A K F  I   ++++W
Sbjct: 382 VKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEALEDAKKAFEDITFREIISW 441

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD--QRCGESIHAVI 178
            A+I+   Q G   EA K+F L   +   PN++   S++ A     D   + G+  HA +
Sbjct: 442 NAMISGFAQNGFSHEALKMF-LSAAAETMPNEYTFGSVLNAIAFAEDISVKQGQRCHAHL 500

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K G  S  +V +AL+ MY + G +    +VF  ++ ++   W ++ S +  +   +  +
Sbjct: 501 LKLGLNSCPVVSSALLDMYAKRGNIDESEKVFNEMSQKNQFVWTSIISAYSSHGDFETVM 560

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK-HSLDGNHVVGTSLVDM 297
            +F++M+ +   P++ TF+ +L AC+    V  G ++    I+ ++L+ +H   + +VDM
Sbjct: 561 NLFHKMIKENVAPDLVTFLSVLTACNRKGMVDKGYEIFNMMIEVYNLEPSHEHYSCMVDM 620

Query: 298 YDKSGCLEDA 307
             ++G L++A
Sbjct: 621 LGRAGRLKEA 630


>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
 gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
          Length = 716

 Score =  307 bits (787), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 173/572 (30%), Positives = 297/572 (51%), Gaps = 5/572 (0%)

Query: 30  GDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLS 89
           G   + + L+  M++      KF +++++        ++ G+ +H   I  G   D  L 
Sbjct: 9   GRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLE 68

Query: 90  CSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK 149
            +L+ MY+KCG  D+A +VF  ++  D+ AW +II    + G  + A  ++  M    V+
Sbjct: 69  TALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYRRMIAEGVE 128

Query: 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRV 209
           PN       +           G +IH  I       D ++ ++L++MY++   +    +V
Sbjct: 129 PNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKV 188

Query: 210 FEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM-LLKGFKPNMCTFIVILKACSSLSD 268
           FE +  ++  S+ A+ S +       + L +F +M  ++  +PN  TF  IL A   L +
Sbjct: 189 FEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGN 248

Query: 269 VGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITS 328
           +  G+++H H      D N VV  +LV MY K G   +A   FDS+  +++ ++T++I +
Sbjct: 249 LEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAA 308

Query: 329 YAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLD 388
           YAQ G  + AL  F++M +E    +  + +S LN C+ +  L  GR +H   V+  +L  
Sbjct: 309 YAQHGNPQEALNLFKRMDVE---PSGVSFSSALNACALLGALDEGREIHHRVVE-ANLAS 364

Query: 389 MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
             + T+L++MYA+CGS+DDA  VF     RD  S N MI  + +HG  ++AL  +R M  
Sbjct: 365 PQMETSLLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRKMEQ 424

Query: 449 EGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFT 508
           EG   D ITFV VL ACSH  L+ + +    S+   +G+ P ++H+ CM+D+LGR+G+  
Sbjct: 425 EGIPADGITFVSVLVACSHTSLVADCRDFLQSLVMDHGVVPLVEHYLCMVDVLGRSGRLG 484

Query: 509 EIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISA 568
           + E  +       +A+ W  LL  C  HG+++  E+ A K+ EL P     YVF S++ A
Sbjct: 485 DAEELVETMPYQADAVAWMTLLSGCKRHGDLDRGERAARKVFELAPAETLPYVFLSNMYA 544

Query: 569 TQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
              R++D   VR  +  +G+ +  + S+IE+D
Sbjct: 545 AAKRFDDARRVRKEMEERGVTRPVAVSYIEID 576



 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 121/444 (27%), Positives = 225/444 (50%), Gaps = 16/444 (3%)

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I  C+ ++G   +A +++  M E  +  ++F++TSLV A T+      G  +H  +   G
Sbjct: 2   IAACV-REGRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITG 60

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F +D  +  AL+ MY + G +    RVFE +  +D  +W+++ + +      +  + ++ 
Sbjct: 61  FRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYR 120

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M+ +G +PN+ TF   L  C+S++ +  G+ +H   +   +  + V+  SL++MY K  
Sbjct: 121 RMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCD 180

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEGIKSNEFTLASCL 361
            + +A   F+ +  +++ +YTA+I++Y QAGE   AL+ F +M ++E I+ N +T A+ L
Sbjct: 181 EMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATIL 240

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
                +  L  GR +H      G   ++ V  ALV MY KCGS  +A  VF     R+  
Sbjct: 241 GAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVI 300

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SW  MI  Y +HG  ++AL  F+ M  E   P  ++F   L+AC+ +G ++EG++    +
Sbjct: 301 SWTSMIAAYAQHGNPQEALNLFKRMDVE---PSGVSFSSALNACALLGALDEGREIHHRV 357

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIEL 541
            +    +P ++    ++ +  R G   +        K T +A     ++ A + HG    
Sbjct: 358 VEANLASPQME--TSLLSMYARCGSLDDARRVFNRMK-TRDAFSCNAMIAAFTQHGR--- 411

Query: 542 DEKDAEKLLELEPKMESNYVFPSD 565
                ++ L +  KME   + P+D
Sbjct: 412 ----KKQALRIYRKMEQEGI-PAD 430



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 124/463 (26%), Positives = 239/463 (51%), Gaps = 9/463 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           AKRVF+ M   ++ +W++++  YA +G G+  + L+  M     + +  + +  L G A+
Sbjct: 84  AKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCAS 143

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G+ +H   +      D  L  SL++MY KC     A KVF  +K  +V ++ A+
Sbjct: 144 VAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAM 203

Query: 124 ITCLDQQGCCQEAAKIFNLMRE-SSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I+   Q G   EA ++F+ M +  +++PN +   +++ A    G+   G  +H  +   G
Sbjct: 204 ISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRG 263

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F+++ +V NALV+MY + G      +VF+++  ++ +SW ++ + +  + +P + L +F 
Sbjct: 264 FDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFK 323

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           +M     +P+  +F   L AC+ L  +  G+++H   ++ +L  +  + TSL+ MY + G
Sbjct: 324 RM---DVEPSGVSFSSALNACALLGALDEGREIHHRVVEANL-ASPQMETSLLSMYARCG 379

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            L+DA   F+ +  +D F+  A+I ++ Q G  + AL+ +RKM  EGI ++  T  S L 
Sbjct: 380 SLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRKMEQEGIPADGITFVSVLV 439

Query: 363 GCSPVATLANGR-LLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DT 420
            CS  + +A+ R  L S+ +  G +  +     +V +  + G + DAE + +    + D 
Sbjct: 440 ACSHTSLVADCRDFLQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQADA 499

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLS 463
            +W  ++ G  +HG  ++   A R + +    P E    V LS
Sbjct: 500 VAWMTLLSGCKRHGDLDRGERAARKVFE--LAPAETLPYVFLS 540



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 124/254 (48%), Gaps = 34/254 (13%)

Query: 325 IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           +I +  + G    AL+ + +M   GI +++F + S +  C+ +  L  GR LH   + TG
Sbjct: 1   MIAACVREGRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITG 60

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
              D+ + TAL+ MYAKCGS+DDA+ VF+G  ++D  +W+ +I  Y + G GE A+  +R
Sbjct: 61  FRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYR 120

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI----------------------- 481
            M+ EG  P+ +TF   L  C+ +  + +G+     I                       
Sbjct: 121 RMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCD 180

Query: 482 -----KKIY-GITP-TIKHFACMIDILGRAGKFTE-IENFITETK---LTPNALVWENLL 530
                +K++ G+    ++ +  MI    +AG+  E +E F   +K   + PNA  +  +L
Sbjct: 181 EMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATIL 240

Query: 531 GACSWHGNIELDEK 544
           GA    GN+E   K
Sbjct: 241 GAVEGLGNLEKGRK 254


>gi|218190567|gb|EEC72994.1| hypothetical protein OsI_06907 [Oryza sativa Indica Group]
          Length = 711

 Score =  307 bits (787), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 181/605 (29%), Positives = 316/605 (52%), Gaps = 7/605 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E +  VF++MP  N VSW A+++G+A     +  +HLF SM     K +  + +T+   
Sbjct: 64  LESSYLVFQTMPTKNTVSWTAMISGFALHNRVEPCLHLFASMMLSSCKPNDITFATLFSV 123

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
                 +  G+ VHA+ +R+G      +S +L+ MY+KCG  + A  +F  I   D+V+W
Sbjct: 124 CTKHALLALGRSVHALQMRMGFHSYVHVSNALLSMYAKCGCIEEAQFIFGCIACKDLVSW 183

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            AII    Q    +    +   M    + P+      ++ +         G      + +
Sbjct: 184 NAIIFGCSQYVLAKHCLDLLKEMERQHIVPDALSFLGVLSSCRHARLVEEGRHCFKTMIE 243

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIA-HQDSVSWNALFSRFQDYESPDQGLR 239
           +G +      + +V +    G +     + + ++   ++V W +L    + + +   G++
Sbjct: 244 HGIKPGLDHYSCMVDLLGRAGLLEEAWDLIQTMSIPPNAVIWGSLLGSCRVHGNISIGIQ 303

Query: 240 IF-YQMLLKGFKPNMCTFIVILKA----CSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
              +++ L+  K    T   IL A    C+       G QLH   +K   D    +G+SL
Sbjct: 304 AAEHRLKLEPGKGETSTDQSILAAAMSSCADRQMFTQGTQLHGLLVKVGCDSTVFIGSSL 363

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           + +Y +   LE + + F ++  K+  ++TA+I+ +A     E  L  F  MRL   K N+
Sbjct: 364 ITLYSRCSQLESSYLVFQTMPTKNTVSWTAMISGFALHNRVEPCLHLFASMRLSSCKPND 423

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKG 414
            T A+  + C+  A LA G+ +H++ ++ G    + VS AL++MYAKCG ID+A+++F  
Sbjct: 424 ITFATLFSVCTNHALLALGKSVHALQMRMGFHSYVHVSNALLSMYAKCGCIDEAQSIFGF 483

Query: 415 SALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEG 474
            A +D  SWN MI G  ++GL +  L+  + M  +  VPD ++F+ VLS+C H  L+EEG
Sbjct: 484 IACKDLVSWNAMIFGCSQYGLAKHCLDLLKEMERQHIVPDALSFLGVLSSCRHARLVEEG 543

Query: 475 KKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACS 534
           +  F ++ + +GI P + H++CM+D+LGRAG   E  + I    + PNA++W +LLG+C 
Sbjct: 544 RHCFKTMIE-HGIKPGLDHYSCMVDLLGRAGLLEEAWDLIQTMSIPPNAVIWGSLLGSCR 602

Query: 535 WHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSC 594
            HGNI +  + AE  L+LEP   + ++  +++ AT G W+D + VR  + ++G+K    C
Sbjct: 603 VHGNISIGIQAAEHRLKLEPGCAATHIQLANLYATIGCWSDVARVRMAMKARGLKTNIGC 662

Query: 595 SWIEV 599
           SWIEV
Sbjct: 663 SWIEV 667



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 104/283 (36%), Positives = 168/283 (59%), Gaps = 1/283 (0%)

Query: 272 GKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQ 331
           G QLH   +K   D    +G+SL+ +Y +   LE + + F ++  K+  ++TA+I+ +A 
Sbjct: 32  GTQLHGLLVKVGCDSTVFIGSSLITLYSRCSQLESSYLVFQTMPTKNTVSWTAMISGFAL 91

Query: 332 AGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFV 391
               E  L  F  M L   K N+ T A+  + C+  A LA GR +H++ ++ G    + V
Sbjct: 92  HNRVEPCLHLFASMMLSSCKPNDITFATLFSVCTKHALLALGRSVHALQMRMGFHSYVHV 151

Query: 392 STALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGY 451
           S AL++MYAKCG I++A+ +F   A +D  SWN +I G  ++ L +  L+  + M  +  
Sbjct: 152 SNALLSMYAKCGCIEEAQFIFGCIACKDLVSWNAIIFGCSQYVLAKHCLDLLKEMERQHI 211

Query: 452 VPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIE 511
           VPD ++F+ VLS+C H  L+EEG+  F ++ + +GI P + H++CM+D+LGRAG   E  
Sbjct: 212 VPDALSFLGVLSSCRHARLVEEGRHCFKTMIE-HGIKPGLDHYSCMVDLLGRAGLLEEAW 270

Query: 512 NFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEP 554
           + I    + PNA++W +LLG+C  HGNI +  + AE  L+LEP
Sbjct: 271 DLIQTMSIPPNAVIWGSLLGSCRVHGNISIGIQAAEHRLKLEP 313



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 125/523 (23%), Positives = 237/523 (45%), Gaps = 21/523 (4%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK 113
           L+  +   A+      G  +H + +++GC    F+  SL+ +YS+C   +++  VF  + 
Sbjct: 16  LAAAMSSCADRQMFTQGTQLHGLLVKVGCDSTVFIGSSLITLYSRCSQLESSYLVFQTMP 75

Query: 114 DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGES 173
             + V+W A+I+        +    +F  M  SS KPN     +L    T+      G S
Sbjct: 76  TKNTVSWTAMISGFALHNRVEPCLHLFASMMLSSCKPNDITFATLFSVCTKHALLALGRS 135

Query: 174 IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYES 233
           +HA+  + GF S   V NAL+SMY + G +     +F  IA +D VSWNA+      Y  
Sbjct: 136 VHALQMRMGFHSYVHVSNALLSMYAKCGCIEEAQFIFGCIACKDLVSWNAIIFGCSQYVL 195

Query: 234 PDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
               L +  +M  +   P+  +F+ +L +C     V  G+      I+H +       + 
Sbjct: 196 AKHCLDLLKEMERQHIVPDALSFLGVLSSCRHARLVEEGRHCFKTMIEHGIKPGLDHYSC 255

Query: 294 LVDMYDKSGCLEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCF-RKMRLEGIK 351
           +VD+  ++G LE+A     +++   +   + +++ S    G   + ++    +++LE  K
Sbjct: 256 MVDLLGRAGLLEEAWDLIQTMSIPPNAVIWGSLLGSCRVHGNISIGIQAAEHRLKLEPGK 315

Query: 352 ----SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
               +++  LA+ ++ C+       G  LH + VK G    +F+ ++L+ +Y++C  ++ 
Sbjct: 316 GETSTDQSILAAAMSSCADRQMFTQGTQLHGLLVKVGCDSTVFIGSSLITLYSRCSQLES 375

Query: 408 AEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
           +  VF+    ++T SW  MI G+  H   E  L  F  M      P++ITF  + S C++
Sbjct: 376 SYLVFQTMPTKNTVSWTAMISGFALHNRVEPCLHLFASMRLSSCKPNDITFATLFSVCTN 435

Query: 468 MGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIEN---FITETKLTPNAL 524
             L+  GK    +++   G    +     ++ +  + G   E ++   FI    L     
Sbjct: 436 HALLALGKS-VHALQMRMGFHSYVHVSNALLSMYAKCGCIDEAQSIFGFIACKDLVS--- 491

Query: 525 VWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
            W  ++  CS +G        A+  L+L  +ME  ++ P  +S
Sbjct: 492 -WNAMIFGCSQYGL-------AKHCLDLLKEMERQHIVPDALS 526



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/435 (22%), Positives = 193/435 (44%), Gaps = 17/435 (3%)

Query: 140 FNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYME 199
             L R+     +Q +L + + +  +      G  +H ++ K G +S   +G++L+++Y  
Sbjct: 1   MELHRKGETSTDQSILAAAMSSCADRQMFTQGTQLHGLLVKVGCDSTVFIGSSLITLYSR 60

Query: 200 NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVI 259
             ++     VF+ +  +++VSW A+ S F  +   +  L +F  M+L   KPN  TF  +
Sbjct: 61  CSQLESSYLVFQTMPTKNTVSWTAMISGFALHNRVEPCLHLFASMMLSSCKPNDITFATL 120

Query: 260 LKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDL 319
              C+  + +  G+ +HA  ++        V  +L+ MY K GC+E+A   F  +A KDL
Sbjct: 121 FSVCTKHALLALGRSVHALQMRMGFHSYVHVSNALLSMYAKCGCIEEAQFIFGCIACKDL 180

Query: 320 FAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSI 379
            ++ AII   +Q   A+  L   ++M  + I  +  +    L+ C     +  GR     
Sbjct: 181 VSWNAIIFGCSQYVLAKHCLDLLKEMERQHIVPDALSFLGVLSSCRHARLVEEGRHCFKT 240

Query: 380 AVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS-WNMMIGGYVKHG---L 435
            ++ G    +   + +V +  + G +++A  + +  ++   A  W  ++G    HG   +
Sbjct: 241 MIEHGIKPGLDHYSCMVDLLGRAGLLEEAWDLIQTMSIPPNAVIWGSLLGSCRVHGNISI 300

Query: 436 GEKALEAFRMMLDEG---YVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIK 492
           G +A E  R+ L+ G      D+      +S+C+   +  +G +    + K+ G   T+ 
Sbjct: 301 GIQAAE-HRLKLEPGKGETSTDQSILAAAMSSCADRQMFTQGTQLHGLLVKV-GCDSTVF 358

Query: 493 HFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLEL 552
             + +I +  R  +  E    + +T  T N + W  ++   + H  +       E  L L
Sbjct: 359 IGSSLITLYSRCSQL-ESSYLVFQTMPTKNTVSWTAMISGFALHNRV-------EPCLHL 410

Query: 553 EPKMESNYVFPSDIS 567
              M  +   P+DI+
Sbjct: 411 FASMRLSSCKPNDIT 425


>gi|224137432|ref|XP_002322556.1| predicted protein [Populus trichocarpa]
 gi|222867186|gb|EEF04317.1| predicted protein [Populus trichocarpa]
          Length = 702

 Score =  307 bits (787), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 202/646 (31%), Positives = 317/646 (49%), Gaps = 59/646 (9%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMK------------------DM 45
           A+ +F  MP  N+VSWN +++GY  +G   +   LF  M                   ++
Sbjct: 25  ARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLFVIMPRRDLFSWTLMITCYTRNGEV 84

Query: 46  EKKFSKF-SLS-TVLKGFA-----NSGYIKAGQVVHAMAIRLGCALDKFLSC-SLVDMYS 97
           EK    F SL  +  KG A      SGY+K G+V  A  +     +   +S  S++  Y+
Sbjct: 85  EKARELFDSLPCSYRKGVACWNAMISGYVKKGRVNEAKRLFDEMPVKNLISWNSMLAGYT 144

Query: 98  KCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTS 157
           +       L+ F  + + DVV+W  ++    Q G    A K F    + + KPN     +
Sbjct: 145 QNRKMRLGLEFFNEMDERDVVSWNLMVDGFIQVGDLDSAWKFF----QETQKPNVVSWVT 200

Query: 158 LVRATTETGDQRCGESIHAVICKYGFESDTLVG-NALVSMYMENGRVSYGSRVFEAIAHQ 216
           ++     +G  R G  + +        S  +V  NA++S Y++   +   SR+FE +  +
Sbjct: 201 ML-----SGFARNGNILESRRLFDQMPSRNIVSWNAMISAYVQRCEIDEASRLFEEMPER 255

Query: 217 DSVSWNALFSRFQDYESPDQGLRIFYQMLLK--GFKPNMCTFIV----ILKACSSLSDVG 270
           DSVSW  + + +      D+   +  +M  +  G +  M +  +    + +A     ++G
Sbjct: 256 DSVSWTTMINGYVRIGKLDEARELLNEMPYRNIGAQTAMISGYIQCNKVDEARRFFDEIG 315

Query: 271 ----------FGKQLHAHTIKHSL-------DGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
                          H   I  +L       + + V   +++  Y + G ++ A   F+ 
Sbjct: 316 TWDVVCWNAMIAGYAHHGRINEALCLSKRMVNKDMVTWNTMISCYAQVGQMDRAVKIFEE 375

Query: 314 LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG 373
           +  +DL ++ ++I  +   G+   ALK F  M  EG K ++ + A  L+ C+ +A L  G
Sbjct: 376 MGERDLVSWNSLIAGFMLNGQNLDALKSFALMGHEGKKPDQLSFACGLSSCATIAALQVG 435

Query: 374 RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKH 433
             LH + VK G+L  + V+ AL+ MYAKCG I +A  VF G    D  SWN +IGGY  +
Sbjct: 436 NQLHQVVVKGGYLNYLVVNNALITMYAKCGRILEAGLVFNGICHADVISWNSLIGGYAIN 495

Query: 434 GLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKH 493
           G G++AL+ F  M  EG  PDE+TF+ +LSAC+H G+++ G K F  + K+Y I P  +H
Sbjct: 496 GYGKEALKLFEEMASEGMAPDEVTFIGILSACNHAGMVDHGLKLFKCMSKVYAIEPLAEH 555

Query: 494 FACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELE 553
           +ACM+D+LGR G+  E    +   K+   A VW  LLGAC  HGN+EL    A KL E E
Sbjct: 556 YACMVDLLGRVGRLDEAFEIVRGMKVKATAGVWGALLGACRAHGNLELGRLAAHKLSEFE 615

Query: 554 PKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           P   SNYV  S+I A   RWN+   VR L+++    KEP CSW+EV
Sbjct: 616 PHKTSNYVLLSNIHAEANRWNEVQEVRMLMNASSTVKEPGCSWVEV 661



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 109/530 (20%), Positives = 236/530 (44%), Gaps = 74/530 (13%)

Query: 91  SLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKP 150
           S++ +Y+K G  + A  +F ++   ++V+W  +++     G   EA K+F +M    +  
Sbjct: 11  SMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLFVIMPRRDL-- 68

Query: 151 NQFVLTSLVRATTETGD-QRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRV 209
             F  T ++   T  G+ ++  E   ++ C Y         NA++S Y++ GRV+   R+
Sbjct: 69  --FSWTLMITCYTRNGEVEKARELFDSLPCSY--RKGVACWNAMISGYVKKGRVNEAKRL 124

Query: 210 FEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM----------LLKGF---------- 249
           F+ +  ++ +SWN++ + +        GL  F +M          ++ GF          
Sbjct: 125 FDEMPVKNLISWNSMLAGYTQNRKMRLGLEFFNEMDERDVVSWNLMVDGFIQVGDLDSAW 184

Query: 250 -------KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
                  KPN+ +++ +L   +   ++   ++L       ++    V   +++  Y +  
Sbjct: 185 KFFQETQKPNVVSWVTMLSGFARNGNILESRRLFDQMPSRNI----VSWNAMISAYVQRC 240

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            +++A   F+ +  +D  ++T +I  Y + G+ + A +   +M    I +    ++  + 
Sbjct: 241 EIDEASRLFEEMPERDSVSWTTMINGYVRIGKLDEARELLNEMPYRNIGAQTAMISGYIQ 300

Query: 363 GCSPV-------------------ATLA----NGRLLHSIAVKTGHL-LDMFVSTALVAM 398
            C+ V                   A +A    +GR+  ++ +    +  DM     +++ 
Sbjct: 301 -CNKVDEARRFFDEIGTWDVVCWNAMIAGYAHHGRINEALCLSKRMVNKDMVTWNTMISC 359

Query: 399 YAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITF 458
           YA+ G +D A  +F+    RD  SWN +I G++ +G    AL++F +M  EG  PD+++F
Sbjct: 360 YAQVGQMDRAVKIFEEMGERDLVSWNSLIAGFMLNGQNLDALKSFALMGHEGKKPDQLSF 419

Query: 459 VVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITET 517
              LS+C+ +  ++ G + H   +K  Y     + +   +I +  + G+  E    +   
Sbjct: 420 ACGLSSCATIAALQVGNQLHQVVVKGGYLNYLVVNN--ALITMYAKCGRILE-AGLVFNG 476

Query: 518 KLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDIS 567
               + + W +L+G  + +G      K+A KL E   +M S  + P +++
Sbjct: 477 ICHADVISWNSLIGGYAINGY----GKEALKLFE---EMASEGMAPDEVT 519



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/326 (21%), Positives = 142/326 (43%), Gaps = 42/326 (12%)

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           E +T+  N+++S+Y +NGR++    +F+ +  ++ VSWN + S +      D+  ++F  
Sbjct: 3   EKNTVTYNSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLFVI 62

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M     + ++ ++ +++   +   +V   ++L   ++  S         +++  Y K G 
Sbjct: 63  MP----RRDLFSWTLMITCYTRNGEVEKARELF-DSLPCSYRKGVACWNAMISGYVKKGR 117

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL-- 361
           + +A   FD +  K+L ++ +++  Y Q  +  + L+ F +M    + S    +   +  
Sbjct: 118 VNEAKRLFDEMPVKNLISWNSMLAGYTQNRKMRLGLEFFNEMDERDVVSWNLMVDGFIQV 177

Query: 362 ----------------NGCSPVATLA----NGRLLHSIAVKTGHLLDMFVS------TAL 395
                           N  S V  L+    NG +L S       L D   S       A+
Sbjct: 178 GDLDSAWKFFQETQKPNVVSWVTMLSGFARNGNILES-----RRLFDQMPSRNIVSWNAM 232

Query: 396 VAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE 455
           ++ Y +   ID+A  +F+    RD+ SW  MI GYV+ G     L+  R +L+E    + 
Sbjct: 233 ISAYVQRCEIDEASRLFEEMPERDSVSWTTMINGYVRIG----KLDEARELLNEMPYRNI 288

Query: 456 ITFVVVLSACSHMGLIEEGKKHFSSI 481
                ++S       ++E ++ F  I
Sbjct: 289 GAQTAMISGYIQCNKVDEARRFFDEI 314


>gi|147784524|emb|CAN61725.1| hypothetical protein VITISV_032420 [Vitis vinifera]
          Length = 763

 Score =  307 bits (787), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 175/532 (32%), Positives = 282/532 (53%), Gaps = 2/532 (0%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF +MPE NVVSW +++ GY+++G G   +  +  M        +F+  +++K  ++
Sbjct: 117 AQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSS 176

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G I  G+ +HA  ++           +L+ MY+K  +  +AL VF R+   D+++WG++
Sbjct: 177 LGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNVIIDALDVFSRMATRDLISWGSM 236

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVK-PNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I    Q G   EA   F  M    V  PN+F+  S+  A +       G  +H +  K+G
Sbjct: 237 IAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFG 296

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
              D   G +L  MY + G +S    VF  I   D V+WNA+ + F       + +  F 
Sbjct: 297 LGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFS 356

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           QM  +G  P+  T   +L AC+S S++  G Q+H +  K  LD +  V  +L+ MY K  
Sbjct: 357 QMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCS 416

Query: 303 CLEDAGVAFDSL-ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
            L DA   F+ +  N DL ++ AI+T+     +AE      + M +   + +  TL + L
Sbjct: 417 ELRDAIFFFEEMRCNADLVSWNAILTACMHHDQAEEVFGLLKLMCISQHRPDYITLTNVL 476

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
              +   ++  G  +H  A+KTG   D+ V+  L+ +YAKCGS+  A  +F      D  
Sbjct: 477 GASAETVSIEIGNQVHCYALKTGLNCDISVTNGLIDLYAKCGSLKTARKIFDSVINPDVV 536

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SW+ +I GY + G GE+AL+ F+ M      P+ +TFV VL+ACSH+GL+EEG + + ++
Sbjct: 537 SWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWQLYGTM 596

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           +K +GI PT +H +CM+D+L RAG   E E FI +    P+ +VW+ LL AC
Sbjct: 597 EKEFGIVPTREHCSCMVDLLARAGCLNEAEAFIHQMAFDPDIVVWKTLLAAC 648



 Score =  221 bits (564), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 149/487 (30%), Positives = 240/487 (49%), Gaps = 13/487 (2%)

Query: 52  FSLSTVLKGFANSGYIKA---GQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKV 108
            +LST     +   Y+++   G+ +H   ++     D  L   +++MY KCG   +A KV
Sbjct: 61  LTLSTYAYLISACSYLRSLEHGRKIHDHMLKSKSHPDLTLQNHILNMYGKCGSLKDAQKV 120

Query: 109 FYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ 168
           F  + + +VV+W ++I    Q G    A + +  M +S V P+QF   S+++A +  GD 
Sbjct: 121 FDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDI 180

Query: 169 RCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF 228
             G  +HA + K  F +  +  NAL+SMY ++  +     VF  +A +D +SW ++ + F
Sbjct: 181 GLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNVIIDALDVFSRMATRDLISWGSMIAGF 240

Query: 229 QDYESPDQGLRIFYQMLLKG-FKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGN 287
                  + L  F +ML +G + PN   F  +  ACSSL    +G+QLH  +IK  L  +
Sbjct: 241 SQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRD 300

Query: 288 HVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL 347
              G SL DMY K G L  A V F  +   DL A+ AII  +A  G+A+ A+  F +MR 
Sbjct: 301 VFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRH 360

Query: 348 EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
           +G+  +E T+ S L  C+  + L  G  +H    K G  LD+ V   L+ MYAKC  + D
Sbjct: 361 QGLIPDEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRD 420

Query: 408 AEAVFKGSALR---DTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSA 464
             A+F    +R   D  SWN ++   + H   E+     ++M    + PD IT   VL A
Sbjct: 421 --AIFFFEEMRCNADLVSWNAILTACMHHDQAEEVFGLLKLMCISQHRPDYITLTNVLGA 478

Query: 465 CSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNA 523
            +    IE G + H  ++K   G+   I     +ID+  + G        I ++ + P+ 
Sbjct: 479 SAETVSIEIGNQVHCYALKT--GLNCDISVTNGLIDLYAKCGSLKTARK-IFDSVINPDV 535

Query: 524 LVWENLL 530
           + W +L+
Sbjct: 536 VSWSSLI 542



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 126/423 (29%), Positives = 205/423 (48%), Gaps = 11/423 (2%)

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLT-----SLVRATTETGDQRCGESIHAVI 178
           IT L +Q    EA K F  ++    K   F LT      L+ A +       G  IH  +
Sbjct: 34  ITTLCKQKLFNEAIKAFEFLQ----KKTGFCLTLSTYAYLISACSYLRSLEHGRKIHDHM 89

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K     D  + N +++MY + G +    +VF+A+  ++ VSW ++ + +         L
Sbjct: 90  LKSKSHPDLTLQNHILNMYGKCGSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNAL 149

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
             ++QML  G  P+  TF  I+KACSSL D+G G+QLHAH +K     + +   +L+ MY
Sbjct: 150 EFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMY 209

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK-SNEFTL 357
            KS  + DA   F  +A +DL ++ ++I  ++Q G    AL  F++M  +G+   NEF  
Sbjct: 210 TKSNVIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIF 269

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
            S  + CS +     GR LH +++K G   D+F   +L  MYAKCG +  A  VF     
Sbjct: 270 GSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGR 329

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
            D  +WN +I G+   G  ++A+  F  M  +G +PDEIT   +L AC+    + +G + 
Sbjct: 330 PDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQV 389

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
              I K+ G+   +     ++ +  +  +  +   F  E +   + + W  +L AC  H 
Sbjct: 390 HGYINKM-GLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMHHD 448

Query: 538 NIE 540
             E
Sbjct: 449 QAE 451



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 162/322 (50%), Gaps = 12/322 (3%)

Query: 248 GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDA 307
           GF   + T+  ++ ACS L  +  G+++H H +K     +  +   +++MY K G L+DA
Sbjct: 58  GFCLTLSTYAYLISACSYLRSLEHGRKIHDHMLKSKSHPDLTLQNHILNMYGKCGSLKDA 117

Query: 308 GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPV 367
              FD++  +++ ++T++I  Y+Q G+   AL+ + +M   G+  ++FT  S +  CS +
Sbjct: 118 QKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSL 177

Query: 368 ATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMI 427
             +  GR LH+  +K+     +    AL++MY K   I DA  VF   A RD  SW  MI
Sbjct: 178 GDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNVIIDALDVFSRMATRDLISWGSMI 237

Query: 428 GGYVKHGLGEKALEAFRMMLDEG-YVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIY 485
            G+ + G   +AL  F+ ML +G Y+P+E  F  V SACS +   E G++ H  SIK  +
Sbjct: 238 AGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIK--F 295

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKD 545
           G+   +     + D+  + G  +       +    P+ + W  ++   ++ G       D
Sbjct: 296 GLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIG-RPDLVAWNAIIAGFAYGG-------D 347

Query: 546 AEKLLELEPKMESNYVFPSDIS 567
           A++ +    +M    + P +I+
Sbjct: 348 AKEAIAFFSQMRHQGLIPDEIT 369



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 170/350 (48%), Gaps = 6/350 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A+ VF  +   ++V+WNA++ G+A  GD ++ +  F  M+       + ++ ++L  
Sbjct: 317 LSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCA 376

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVVA 119
             +   +  G  VH    ++G  LD  +  +L+ MY+KC    +A+  F  ++ + D+V+
Sbjct: 377 CTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVS 436

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W AI+T        +E   +  LM  S  +P+   LT+++ A+ ET     G  +H    
Sbjct: 437 WNAILTACMHHDQAEEVFGLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYAL 496

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K G   D  V N L+ +Y + G +    ++F+++ + D VSW++L   +  +   ++ L+
Sbjct: 497 KTGLNCDISVTNGLIDLYAKCGSLKTARKIFDSVINPDVVSWSSLILGYAQFGYGEEALK 556

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKH-SLDGNHVVGTSLVDMY 298
           +F  M     KPN  TF+ +L ACS +  V  G QL+    K   +       + +VD+ 
Sbjct: 557 LFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWQLYGTMEKEFGIVPTREHCSCMVDLL 616

Query: 299 DKSGCLEDAGVAFDSLA-NKDLFAYTAIIT---SYAQAGEAEMALKCFRK 344
            ++GCL +A      +A + D+  +  ++    S  QA      LK ++K
Sbjct: 617 ARAGCLNEAEAFIHQMAFDPDIVVWKTLLAACKSVHQALARRTNLKVWKK 666


>gi|302801049|ref|XP_002982281.1| hypothetical protein SELMODRAFT_116350 [Selaginella moellendorffii]
 gi|300149873|gb|EFJ16526.1| hypothetical protein SELMODRAFT_116350 [Selaginella moellendorffii]
          Length = 515

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 168/515 (32%), Positives = 279/515 (54%), Gaps = 28/515 (5%)

Query: 52  FSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYR 111
            +LS VL+   +   +K G++VHA  I  G   D  +  SLV+MY+KCG    A KVF R
Sbjct: 5   LALSMVLEACGSLAELKGGKLVHAHVIESGLEGD-LVGISLVNMYAKCGTVGEARKVFER 63

Query: 112 IKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG 171
           I +   + W ++IT   ++    EA  +F  M+   V P++    +++ A     D   G
Sbjct: 64  INNRSRILWNSMITAYQERDP-HEALHLFREMQPEGVSPDRITFMTVLNACVNAADLENG 122

Query: 172 ESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDY 231
            +IH  I   GF +D  V  AL +MY + G +     VF+++  +D VSWN + + +   
Sbjct: 123 RTIHRRIVDSGFAADVRVATALFNMYAKCGSLGEARGVFDSMVFRDVVSWNNMIAAYVQG 182

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
              +  + + + M L+G +P+  TF  +L ACS  + +  G+Q+H+              
Sbjct: 183 RDGEGAISLCWAMQLEGMRPDKATFASLLNACSDPNRLVDGRQIHSEIFD---------- 232

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
               +++  S              ++DLF +T++IT+Y Q GE   AL+ + +M    ++
Sbjct: 233 ----NIFSNS-----------QQHHRDLFLWTSMITAYEQHGEYRKALELYEQMHSRQVE 277

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
           ++  T  S LN C+ ++ L  G+ +H+  ++ G   D+ V+ ++V MY KCGS D+A  V
Sbjct: 278 ADRVTFISVLNACAHLSDLRQGQAIHARVMRRGLATDVAVANSIVFMYGKCGSFDEASIV 337

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F+ +  +D + W  +I  Y +HG GE+AL  FR +  +G     +TFV +LSACSH+GLI
Sbjct: 338 FEKTKHKDISLWTALIASYARHGHGEQALWIFRRLRQDGIELSNLTFVAMLSACSHVGLI 397

Query: 472 EEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLG 531
           EEG + F+S+ ++ GI P ++H++C++D+L RAG     E F++   +  N +V   LL 
Sbjct: 398 EEGCEFFASMAEL-GIEPNMEHYSCLVDLLARAGHLHTAEEFLSRMPVAANTIVLTALLA 456

Query: 532 ACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDI 566
           AC  HG++E   + AEKL  L+P+ E+ YV  S+I
Sbjct: 457 ACRVHGDVERARRVAEKLEALDPESEAPYVTLSNI 491



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 111/393 (28%), Positives = 195/393 (49%), Gaps = 33/393 (8%)

Query: 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRV 209
           P    L+ ++ A     + + G+ +HA + + G E D LVG +LV+MY + G V    +V
Sbjct: 2   PKTLALSMVLEACGSLAELKGGKLVHAHVIESGLEGD-LVGISLVNMYAKCGTVGEARKV 60

Query: 210 FEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDV 269
           FE I ++  + WN++ + +Q+ + P + L +F +M  +G  P+  TF+ +L AC + +D+
Sbjct: 61  FERINNRSRILWNSMITAYQERD-PHEALHLFREMQPEGVSPDRITFMTVLNACVNAADL 119

Query: 270 GFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSY 329
             G+ +H   +      +  V T+L +MY K G L +A   FDS+  +D+ ++  +I +Y
Sbjct: 120 ENGRTIHRRIVDSGFAADVRVATALFNMYAKCGSLGEARGVFDSMVFRDVVSWNNMIAAY 179

Query: 330 AQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDM 389
            Q  + E A+     M+LEG++ ++ T AS LN CS    L +GR +HS         ++
Sbjct: 180 VQGRDGEGAISLCWAMQLEGMRPDKATFASLLNACSDPNRLVDGRQIHS---------EI 230

Query: 390 FVSTALVAMYAKCGSIDDAEAVFKGSAL--RDTASWNMMIGGYVKHGLGEKALEAFRMML 447
           F                  + +F  S    RD   W  MI  Y +HG   KALE +  M 
Sbjct: 231 F------------------DNIFSNSQQHHRDLFLWTSMITAYEQHGEYRKALELYEQMH 272

Query: 448 DEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKF 507
                 D +TF+ VL+AC+H+  + +G+   + + +  G+   +     ++ + G+ G F
Sbjct: 273 SRQVEADRVTFISVLNACAHLSDLRQGQAIHARVMR-RGLATDVAVANSIVFMYGKCGSF 331

Query: 508 TEIENFITETKLTPNALVWENLLGACSWHGNIE 540
            E      +TK    +L W  L+ + + HG+ E
Sbjct: 332 DEASIVFEKTKHKDISL-WTALIASYARHGHGE 363



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 107/406 (26%), Positives = 194/406 (47%), Gaps = 26/406 (6%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF+ +   + + WN+++  Y E  D  + +HLF  M+       + +  TVL    N
Sbjct: 57  ARKVFERINNRSRILWNSMITAYQER-DPHEALHLFREMQPEGVSPDRITFMTVLNACVN 115

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +  ++ G+ +H   +  G A D  ++ +L +MY+KCG    A  VF  +   DVV+W  +
Sbjct: 116 AADLENGRTIHRRIVDSGFAADVRVATALFNMYAKCGSLGEARGVFDSMVFRDVVSWNNM 175

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q    + A  +   M+   ++P++    SL+ A ++      G  IH+ I     
Sbjct: 176 IAAYVQGRDGEGAISLCWAMQLEGMRPDKATFASLLNACSDPNRLVDGRQIHSEIF---- 231

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D +  N+                      H+D   W ++ + ++ +    + L ++ Q
Sbjct: 232 --DNIFSNSQQH-------------------HRDLFLWTSMITAYEQHGEYRKALELYEQ 270

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M  +  + +  TFI +L AC+ LSD+  G+ +HA  ++  L  +  V  S+V MY K G 
Sbjct: 271 MHSRQVEADRVTFISVLNACAHLSDLRQGQAIHARVMRRGLATDVAVANSIVFMYGKCGS 330

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
            ++A + F+   +KD+  +TA+I SYA+ G  E AL  FR++R +GI+ +  T  + L+ 
Sbjct: 331 FDEASIVFEKTKHKDISLWTALIASYARHGHGEQALWIFRRLRQDGIELSNLTFVAMLSA 390

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAE 409
           CS V  +  G    +   + G   +M   + LV + A+ G +  AE
Sbjct: 391 CSHVGLIEEGCEFFASMAELGIEPNMEHYSCLVDLLARAGHLHTAE 436


>gi|297802780|ref|XP_002869274.1| hypothetical protein ARALYDRAFT_491483 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315110|gb|EFH45533.1| hypothetical protein ARALYDRAFT_491483 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 686

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 181/596 (30%), Positives = 310/596 (52%), Gaps = 12/596 (2%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           +F+++ + +VVSWN +L+G+    D Q  ++    MK     F  F+ ST L     S  
Sbjct: 58  IFENLVDPDVVSWNTILSGF---DDNQIALNFVVRMKSAGVVFDAFTYSTALSFCVGSEG 114

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
            + G  + +  ++ G   D  +  S + MYS+ G    A +VF  +   D+++W ++++ 
Sbjct: 115 FRLGLQLQSTVVKSGLESDLVVGNSFITMYSRSGSFRGARRVFDEMPFKDMISWNSLLSG 174

Query: 127 LDQQGCCQ-EAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFES 185
           L Q+G    EA  IF  M    V+ +    TS++       D +    IH +  K G+ES
Sbjct: 175 LSQEGTFGFEAVLIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYES 234

Query: 186 DTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML 245
              VGN L+S Y + G +     VF  ++ ++ VSW  + S      + D  + IF  M 
Sbjct: 235 LLEVGNILMSRYSKCGVLEAVKSVFYQMSERNVVSWTTMIS-----SNRDDAVSIFLNMR 289

Query: 246 LKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLE 305
           L G  PN  TF+ +L A      +  G ++H   IK        VG S + MY K   LE
Sbjct: 290 LDGVYPNEVTFVGLLNAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITMYAKFEALE 349

Query: 306 DAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
           DA  AFD +  +++ ++ A+I+ +AQ G +  ALK F     E +  NE+T  S LN  +
Sbjct: 350 DAKKAFDDITFREIISWNAMISGFAQNGFSHEALKMFLSATAETMP-NEYTFGSVLNAIA 408

Query: 366 PVATLA--NGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
               ++  +G+  H+  +K G      VS+AL+ MYAK G+I+++E VF   + R+   W
Sbjct: 409 FAEDISVKHGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNINESEKVFNEMSQRNQFVW 468

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
             +I  Y  HG     +  F  M+ E   PD +TF+ VL+AC+  G++++G +  + + +
Sbjct: 469 TSIISAYSSHGDFNSVMNLFHEMIKENVAPDLVTFLSVLTACNRKGMVDKGHEILNMMIE 528

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            Y + P+ +H++CM+D+LGRAG+  E E  ++E    P   + +++LG+C  HGN+++  
Sbjct: 529 DYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPGESMLQSMLGSCRLHGNVKMGA 588

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           K AE  +E++P++  +YV   +I A + +W+  + +R  +  + + KE   SWI+V
Sbjct: 589 KVAELAMEMKPELSGSYVQMYNIYAEKEQWDKAAEIRKAMRKKNVSKEAGFSWIDV 644



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 133/477 (27%), Positives = 232/477 (48%), Gaps = 14/477 (2%)

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
           G +K G  +H  +   G      +S +++ MY K G  DNAL +F  + DPDVV+W  I+
Sbjct: 15  GDLKRGCQIHGFSTTCGFTSFVCVSNAVMGMYRKAGRFDNALYIFENLVDPDVVSWNTIL 74

Query: 125 TCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFE 184
           +  D     Q A      M+ + V  + F  ++ +     +   R G  + + + K G E
Sbjct: 75  SGFDDN---QIALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFRLGLQLQSTVVKSGLE 131

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF-QDYESPDQGLRIFYQ 243
           SD +VGN+ ++MY  +G      RVF+ +  +D +SWN+L S   Q+     + + IF  
Sbjct: 132 SDLVVGNSFITMYSRSGSFRGARRVFDEMPFKDMISWNSLLSGLSQEGTFGFEAVLIFRD 191

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M+ +G + +  +F  ++  C   +D+   +Q+H   IK   +    VG  L+  Y K G 
Sbjct: 192 MMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYESLLEVGNILMSRYSKCGV 251

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           LE     F  ++ +++ ++T +I+S       + A+  F  MRL+G+  NE T    LN 
Sbjct: 252 LEAVKSVFYQMSERNVVSWTTMISS-----NRDDAVSIFLNMRLDGVYPNEVTFVGLLNA 306

Query: 364 CSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASW 423
                 +  G  +H + +KTG + +  V  + + MYAK  +++DA+  F     R+  SW
Sbjct: 307 VKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITMYAKFEALEDAKKAFDDITFREIISW 366

Query: 424 NMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI--EEGKKHFSSI 481
           N MI G+ ++G   +AL+ F     E  +P+E TF  VL+A +    I  + G++  + +
Sbjct: 367 NAMISGFAQNGFSHEALKMFLSATAE-TMPNEYTFGSVLNAIAFAEDISVKHGQRCHAHL 425

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGN 538
            K+ G+       + ++D+  + G   E E    E     N  VW +++ A S HG+
Sbjct: 426 LKL-GLNSCPVVSSALLDMYAKRGNINESEKVFNEMS-QRNQFVWTSIISAYSSHGD 480



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 204/412 (49%), Gaps = 10/412 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGD-GQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           A+RVF  MP  +++SWN+LL+G ++ G  G + + +F  M     +    S ++V+    
Sbjct: 153 ARRVFDEMPFKDMISWNSLLSGLSQEGTFGFEAVLIFRDMMREGVELDHVSFTSVITTCC 212

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGA 122
           +   +K  + +H + I+ G      +   L+  YSKCG+ +    VFY++ + +VV+W  
Sbjct: 213 HETDLKLARQIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAVKSVFYQMSERNVVSWTT 272

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I+         +A  IF  MR   V PN+     L+ A       + G  IH +  K G
Sbjct: 273 MISSNR-----DDAVSIFLNMRLDGVYPNEVTFVGLLNAVKCNEQIKEGLKIHGLCIKTG 327

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
           F S+  VGN+ ++MY +   +    + F+ I  ++ +SWNA+ S F       + L++F 
Sbjct: 328 FVSEPSVGNSFITMYAKFEALEDAKKAFDDITFREIISWNAMISGFAQNGFSHEALKMFL 387

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGF--GKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
               +   PN  TF  +L A +   D+    G++ HAH +K  L+   VV ++L+DMY K
Sbjct: 388 SATAETM-PNEYTFGSVLNAIAFAEDISVKHGQRCHAHLLKLGLNSCPVVSSALLDMYAK 446

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G + ++   F+ ++ ++ F +T+II++Y+  G+    +  F +M  E +  +  T  S 
Sbjct: 447 RGNINESEKVFNEMSQRNQFVWTSIISAYSSHGDFNSVMNLFHEMIKENVAPDLVTFLSV 506

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVS-TALVAMYAKCGSIDDAEAV 411
           L  C+    +  G  + ++ ++  +L       + +V M  + G + +AE +
Sbjct: 507 LTACNRKGMVDKGHEILNMMIEDYNLEPSHEHYSCMVDMLGRAGRLKEAEEL 558



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 156/310 (50%), Gaps = 9/310 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E  K VF  M E NVVSW  ++     S +    + +F +M+      ++ +   +L  
Sbjct: 252 LEAVKSVFYQMSERNVVSWTTMI-----SSNRDDAVSIFLNMRLDGVYPNEVTFVGLLNA 306

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
              +  IK G  +H + I+ G   +  +  S + MY+K    ++A K F  I   ++++W
Sbjct: 307 VKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITMYAKFEALEDAKKAFDDITFREIISW 366

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGD--QRCGESIHAVI 178
            A+I+   Q G   EA K+F L   +   PN++   S++ A     D   + G+  HA +
Sbjct: 367 NAMISGFAQNGFSHEALKMF-LSATAETMPNEYTFGSVLNAIAFAEDISVKHGQRCHAHL 425

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K G  S  +V +AL+ MY + G ++   +VF  ++ ++   W ++ S +  +   +  +
Sbjct: 426 LKLGLNSCPVVSSALLDMYAKRGNINESEKVFNEMSQRNQFVWTSIISAYSSHGDFNSVM 485

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIK-HSLDGNHVVGTSLVDM 297
            +F++M+ +   P++ TF+ +L AC+    V  G ++    I+ ++L+ +H   + +VDM
Sbjct: 486 NLFHEMIKENVAPDLVTFLSVLTACNRKGMVDKGHEILNMMIEDYNLEPSHEHYSCMVDM 545

Query: 298 YDKSGCLEDA 307
             ++G L++A
Sbjct: 546 LGRAGRLKEA 555


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 164/456 (35%), Positives = 245/456 (53%), Gaps = 6/456 (1%)

Query: 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRV 209
           P +     L+ +  E      G  +H  +   G + D  +   L++MY + G V +  +V
Sbjct: 72  PTKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKV 131

Query: 210 FEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACS----S 265
           F+    +    WNA+F         +  L ++ QM   G   N  T+  +LKAC     S
Sbjct: 132 FDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELS 191

Query: 266 LSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
           +  +  GK++HAH ++H  +G+  V T+L+D+Y + G +  A   F ++ +K++ +++A+
Sbjct: 192 ICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAM 251

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKS--NEFTLASCLNGCSPVATLANGRLLHSIAVKT 383
           I  YA+      AL+ F+ M LE   +  N  T+ S L  C+ +A L +G+L+H+  ++ 
Sbjct: 252 IACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRR 311

Query: 384 GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF 443
           G    + V   L+ MY +CG I   + VF     RD  SWN +I  Y  HGLG+KA++ F
Sbjct: 312 GLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIF 371

Query: 444 RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGR 503
             M++ G  P  ITF+ VL ACSH GL+EE K  F S+   Y I P ++H+ACM+DILGR
Sbjct: 372 ENMINRGVSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGR 431

Query: 504 AGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFP 563
           A +  E    I      P   VW +LLG+C  H N+EL E+ +  L ELEPK   NYV  
Sbjct: 432 ANRLDEAIELIQNMDFKPGPTVWGSLLGSCRIHCNVELAERASAMLFELEPKNAGNYVLL 491

Query: 564 SDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           S I A    WND   VR  L S+G++K PSCSWIEV
Sbjct: 492 SHIYAKSRMWNDVRRVRKQLESRGLQKIPSCSWIEV 527



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/435 (24%), Positives = 202/435 (46%), Gaps = 12/435 (2%)

Query: 22  LLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLG 81
           L+      G+ ++ + L C   +  KK  +  +++ ++   NS  +  G  VH   +  G
Sbjct: 49  LIQSLCRGGNLKQAVQLLCCEPNPTKKTFELLINSCIE--QNS--LSDGVDVHHRLVGSG 104

Query: 82  CALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFN 141
              D +L+  L++MY   G  D+A KVF   ++  +  W AI   L      ++   ++ 
Sbjct: 105 LDQDPYLATKLINMYCDLGSVDHACKVFDETREKTIFVWNAIFRALAMASRGEDLLVLYG 164

Query: 142 LMRESSVKPNQFVLTSLVRATTETGDQRC----GESIHAVICKYGFESDTLVGNALVSMY 197
            M    +  N+F  T +++A   +    C    G+ IHA I ++G+E    V   L+ +Y
Sbjct: 165 QMNWIGIPSNRFTYTYVLKACVVSELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVY 224

Query: 198 MENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFK--PNMCT 255
              G VSY S VF A+  ++ VSW+A+ + +   E P + L +F  M+L+     PN  T
Sbjct: 225 ARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPIT 284

Query: 256 FIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLA 315
            + +L+AC+SL+ +  GK +HA+ ++  LD    V  +L+ MY + G +      FD + 
Sbjct: 285 MVSVLQACASLAALEHGKLVHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMK 344

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRL 375
            +D+ ++ ++I+ Y   G  + A++ F  M   G+  +  T  + L  CS    +   ++
Sbjct: 345 KRDVISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVLCACSHAGLVEEAKI 404

Query: 376 L-HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS-WNMMIGGYVKH 433
           L  S+  K      M     +V +  +   +D+A  + +    +   + W  ++G    H
Sbjct: 405 LFESMLNKYRIHPRMEHYACMVDILGRANRLDEAIELIQNMDFKPGPTVWGSLLGSCRIH 464

Query: 434 GLGEKALEAFRMMLD 448
              E A  A  M+ +
Sbjct: 465 CNVELAERASAMLFE 479



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 135/267 (50%), Gaps = 6/267 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A +VF    E  +  WNA+    A +  G+ ++ L+  M  +    ++F+ + VLK    
Sbjct: 128 ACKVFDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVV 187

Query: 64  SGY----IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           S      ++ G+ +HA  +R G      +  +L+D+Y++ G    A  VF  + D ++V+
Sbjct: 188 SELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVS 247

Query: 120 WGAIITCLDQQGCCQEAAKIFNLM--RESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           W A+I C  +     +A ++F +M        PN   + S+++A         G+ +HA 
Sbjct: 248 WSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAY 307

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
           + + G +S   V N L++MY   G +S G RVF+ +  +D +SWN+L S +  +    + 
Sbjct: 308 VLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKA 367

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACS 264
           ++IF  M+ +G  P+  TFI +L ACS
Sbjct: 368 IQIFENMINRGVSPSYITFITVLCACS 394



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 144/302 (47%), Gaps = 10/302 (3%)

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           Q+L     P   TF +++ +C   + +  G  +H   +   LD +  + T L++MY   G
Sbjct: 64  QLLCCEPNPTKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLG 123

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            ++ A   FD    K +F + AI  + A A   E  L  + +M   GI SN FT    L 
Sbjct: 124 SVDHACKVFDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLK 183

Query: 363 GCS----PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR 418
            C      +  L  G+ +H+  ++ G+   + V T L+ +YA+ G +  A +VF     +
Sbjct: 184 ACVVSELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDK 243

Query: 419 DTASWNMMIGGYVKHGLGEKALEAFRMMLDEG--YVPDEITFVVVLSACSHMGLIEEGK- 475
           +  SW+ MI  Y K+ +  KALE F++M+ E    VP+ IT V VL AC+ +  +E GK 
Sbjct: 244 NIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKL 303

Query: 476 KHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSW 535
            H   +++  G+  T+     +I + GR G+ +  +      K   + + W +L+     
Sbjct: 304 VHAYVLRR--GLDSTLPVLNTLITMYGRCGEISTGQRVFDYMK-KRDVISWNSLISIYGM 360

Query: 536 HG 537
           HG
Sbjct: 361 HG 362



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 89/167 (53%), Gaps = 6/167 (3%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM--KDMEKKFSKFSLSTVLKGF 61
           A  VF +MP+ N+VSW+A++  YA++    K + LF  M  +  +   +  ++ +VL+  
Sbjct: 233 ASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQAC 292

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSC--SLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           A+   ++ G++VHA  +R G  LD  L    +L+ MY +CG      +VF  +K  DV++
Sbjct: 293 ASLAALEHGKLVHAYVLRRG--LDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVIS 350

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
           W ++I+     G  ++A +IF  M    V P+     +++ A +  G
Sbjct: 351 WNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVLCACSHAG 397



 Score = 46.6 bits (109), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 66/124 (53%), Gaps = 6/124 (4%)

Query: 5   KRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANS 64
           +RVF  M + +V+SWN+L++ Y   G G+K + +F +M +     S  +  TVL   +++
Sbjct: 337 QRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVLCACSHA 396

Query: 65  GYIKAGQVVHAMAI---RLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVVAW 120
           G ++  +++    +   R+   ++ + +C +VD+  +    D A+++   +   P    W
Sbjct: 397 GLVEEAKILFESMLNKYRIHPRMEHY-AC-MVDILGRANRLDEAIELIQNMDFKPGPTVW 454

Query: 121 GAII 124
           G+++
Sbjct: 455 GSLL 458


>gi|302799324|ref|XP_002981421.1| hypothetical protein SELMODRAFT_114363 [Selaginella moellendorffii]
 gi|300150961|gb|EFJ17609.1| hypothetical protein SELMODRAFT_114363 [Selaginella moellendorffii]
          Length = 789

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 180/602 (29%), Positives = 305/602 (50%), Gaps = 12/602 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +   MP  N +SWNA++   A++GD  + +  F   + M +  S       L     
Sbjct: 66  AELLLDRMPRRNALSWNAVIRANAQAGDFPRSLLFF---QRMLQDGSLPDAVVFLSLIKA 122

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              I+ G++V   A + G      +  +L+ MY +CG  D A   F RI++  VV+W A+
Sbjct: 123 PRTIQEGEIVQEFAEKSGFDRSFVVGTALIGMYGRCGRLDRAKDAFDRIQERGVVSWNAL 182

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQ--RCGESIHAVICKY 181
           IT   +    +++ ++F  M    + PN   +  +  A      +   CG  IH+     
Sbjct: 183 ITVYSRGDEKEQSLRVFREMLLQGIAPNAVTIICIASAVAGIAAKITTCGNLIHSCSIDS 242

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           G  S T V N++++++   G ++  + +FE +  +D  SWN + S F         L ++
Sbjct: 243 GLISVTTVANSIINLFGRGGNITRANDIFEKMDRRDVCSWNTMISAFAQNGHSSGALDLY 302

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
            +M ++   P+  TF+ +L+AC    D+  G+ +H     H  D + +V T+LV MY + 
Sbjct: 303 GRMTIR---PDGVTFVNVLEACDCPDDLERGESIHRDVRAHGYDSDLIVATALVSMYRRC 359

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G L+ A   F ++ +  +    AII ++AQ G A+ +L  FR+M   GI+ ++FTL + L
Sbjct: 360 GRLDRAAEVFAAIQHPGVITLNAIIAAHAQFGRADGSLLHFRQMLQLGIRPSKFTLVAVL 419

Query: 362 NGCSPVATLANG-RLLHSIAVKTG---HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
             C+     A+  R LH    +        D+ V  ALV MYAKCG +D A  +F  +  
Sbjct: 420 GACATSGAAASAGRDLHRWMAECPGDCDPHDILVRNALVNMYAKCGDLDAARGIFDAAPQ 479

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
            + ++WN ++ GY +HG    A+     M   G  PD I+F   LSA SH   +E+G + 
Sbjct: 480 GNVSTWNAIMAGYAQHGYANMAVRLLYEMQLAGISPDPISFTAALSASSHARQVEDGARI 539

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F +I + YG+ P+++H+  ++D+LGRAG   E E F+    +  +A  W  LLGAC  H 
Sbjct: 540 FYAISRDYGLIPSVEHYGAVVDLLGRAGWLEEAEGFLRSMAIAADAAAWMALLGACRIHK 599

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           + +   + AE ++ ++P   ++Y   S++ +  GRW++   +R  +S  G +KEP  SWI
Sbjct: 600 DQDRAMRAAEAIVAIDPSHGASYTVLSNVYSAAGRWDEAEEIRRRMSENGARKEPGRSWI 659

Query: 598 EV 599
           EV
Sbjct: 660 EV 661



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 113/401 (28%), Positives = 191/401 (47%), Gaps = 8/401 (1%)

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           S  ++ G+ +H   I  G     FLS  L+ MY++   + +A  +  R+   + ++W A+
Sbjct: 25  STSLEQGRKIHRRVIESGYGDHLFLSNHLLHMYARLESSRDAELLLDRMPRRNALSWNAV 84

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I    Q G    +   F  M +    P+  V  SL++A     +   GE +     K GF
Sbjct: 85  IRANAQAGDFPRSLLFFQRMLQDGSLPDAVVFLSLIKAPRTIQE---GEIVQEFAEKSGF 141

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           +   +VG AL+ MY   GR+      F+ I  +  VSWNAL + +   +  +Q LR+F +
Sbjct: 142 DRSFVVGTALIGMYGRCGRLDRAKDAFDRIQERGVVSWNALITVYSRGDEKEQSLRVFRE 201

Query: 244 MLLKGFKPNMCTFIVILKACSSLSD--VGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKS 301
           MLL+G  PN  T I I  A + ++      G  +H+ +I   L     V  S+++++ + 
Sbjct: 202 MLLQGIAPNAVTIICIASAVAGIAAKITTCGNLIHSCSIDSGLISVTTVANSIINLFGRG 261

Query: 302 GCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCL 361
           G +  A   F+ +  +D+ ++  +I+++AQ G +  AL  + +M    I+ +  T  + L
Sbjct: 262 GNITRANDIFEKMDRRDVCSWNTMISAFAQNGHSSGALDLYGRM---TIRPDGVTFVNVL 318

Query: 362 NGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTA 421
             C     L  G  +H      G+  D+ V+TALV+MY +CG +D A  VF         
Sbjct: 319 EACDCPDDLERGESIHRDVRAHGYDSDLIVATALVSMYRRCGRLDRAAEVFAAIQHPGVI 378

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVL 462
           + N +I  + + G  + +L  FR ML  G  P + T V VL
Sbjct: 379 TLNAIIAAHAQFGRADGSLLHFRQMLQLGIRPSKFTLVAVL 419



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 109/421 (25%), Positives = 205/421 (48%), Gaps = 12/421 (2%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM---KDMEKKFSKFSLSTV 57
           ++ AK  F  + E  VVSWNAL+  Y+   + ++ + +F  M          +   +++ 
Sbjct: 161 LDRAKDAFDRIQERGVVSWNALITVYSRGDEKEQSLRVFREMLLQGIAPNAVTIICIASA 220

Query: 58  LKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDV 117
           + G A +     G ++H+ +I  G      ++ S+++++ + G    A  +F ++   DV
Sbjct: 221 VAGIA-AKITTCGNLIHSCSIDSGLISVTTVANSIINLFGRGGNITRANDIFEKMDRRDV 279

Query: 118 VAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
            +W  +I+   Q G    A  ++  M   +++P+     +++ A     D   GESIH  
Sbjct: 280 CSWNTMISAFAQNGHSSGALDLYGRM---TIRPDGVTFVNVLEACDCPDDLERGESIHRD 336

Query: 178 ICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQG 237
           +  +G++SD +V  ALVSMY   GR+   + VF AI H   ++ NA+ +    +   D  
Sbjct: 337 VRAHGYDSDLIVATALVSMYRRCGRLDRAAEVFAAIQHPGVITLNAIIAAHAQFGRADGS 396

Query: 238 LRIFYQMLLKGFKPNMCTFIVIL-KACSSLSDVGFGKQLHAHTIKHSLDGNH---VVGTS 293
           L  F QML  G +P+  T + +L    +S +    G+ LH    +   D +    +V  +
Sbjct: 397 LLHFRQMLQLGIRPSKFTLVAVLGACATSGAAASAGRDLHRWMAECPGDCDPHDILVRNA 456

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           LV+MY K G L+ A   FD+    ++  + AI+  YAQ G A MA++   +M+L GI  +
Sbjct: 457 LVNMYAKCGDLDAARGIFDAAPQGNVSTWNAIMAGYAQHGYANMAVRLLYEMQLAGISPD 516

Query: 354 EFTLASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
             +  + L+  S    + +G R+ ++I+   G +  +    A+V +  + G +++AE   
Sbjct: 517 PISFTAALSASSHARQVEDGARIFYAISRDYGLIPSVEHYGAVVDLLGRAGWLEEAEGFL 576

Query: 413 K 413
           +
Sbjct: 577 R 577



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 172/354 (48%), Gaps = 13/354 (3%)

Query: 158 LVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQD 217
           L R   E+     G  IH  + + G+     + N L+ MY           + + +  ++
Sbjct: 18  LARLVDESTSLEQGRKIHRRVIESGYGDHLFLSNHLLHMYARLESSRDAELLLDRMPRRN 77

Query: 218 SVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHA 277
           ++SWNA+           + L  F +ML  G  P+   F+ ++KA  ++ +   G+ +  
Sbjct: 78  ALSWNAVIRANAQAGDFPRSLLFFQRMLQDGSLPDAVVFLSLIKAPRTIQE---GEIVQE 134

Query: 278 HTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEM 337
              K   D + VVGT+L+ MY + G L+ A  AFD +  + + ++ A+IT Y++  E E 
Sbjct: 135 FAEKSGFDRSFVVGTALIGMYGRCGRLDRAKDAFDRIQERGVVSWNALITVYSRGDEKEQ 194

Query: 338 ALKCFRKMRLEGIKSNEFT---LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTA 394
           +L+ FR+M L+GI  N  T   +AS + G +   T   G L+HS ++ +G +    V+ +
Sbjct: 195 SLRVFREMLLQGIAPNAVTIICIASAVAGIAAKITTC-GNLIHSCSIDSGLISVTTVANS 253

Query: 395 LVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF-RMMLDEGYVP 453
           ++ ++ + G+I  A  +F+    RD  SWN MI  + ++G    AL+ + RM +     P
Sbjct: 254 IINLFGRGGNITRANDIFEKMDRRDVCSWNTMISAFAQNGHSSGALDLYGRMTIR----P 309

Query: 454 DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKF 507
           D +TFV VL AC     +E G+     ++  +G    +     ++ +  R G+ 
Sbjct: 310 DGVTFVNVLEACDCPDDLERGESIHRDVRA-HGYDSDLIVATALVSMYRRCGRL 362


>gi|242077664|ref|XP_002448768.1| hypothetical protein SORBIDRAFT_06g032835 [Sorghum bicolor]
 gi|241939951|gb|EES13096.1| hypothetical protein SORBIDRAFT_06g032835 [Sorghum bicolor]
          Length = 598

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 169/513 (32%), Positives = 269/513 (52%), Gaps = 3/513 (0%)

Query: 87  FLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRES 146
           FL   L+  Y KC L    L+V   +   + V+W A I  L Q G  ++A  +F  MR +
Sbjct: 78  FLHNHLLIAYFKCRLHRRGLRVLDEMPHRNAVSWSAAIAGLAQGGRPRDALALFIRMRLA 137

Query: 147 SVKPNQFVLTSLVRATT-ETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSY 205
              PN+F L S + A++       C   ++A+  + GF+S   + NA ++    +G++  
Sbjct: 138 GCPPNEFALASALNASSFAPAGTGCARQLYALSVRLGFDSSVFLTNAFLAAMARHGQLED 197

Query: 206 GSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSS 265
             R+F   + +D VSWN L + F  + S  QG  ++ +M+ +  + +  +F  +L   ++
Sbjct: 198 AVRLFNGSSVRDIVSWNTLLAGFARHWSV-QGWILWRRMVREAVRADGFSFSTVLSGLAA 256

Query: 266 LSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
            + +  G Q+HA  +K     +  VG SLV+MY KS CL D  +AF  +  KD+ ++T +
Sbjct: 257 STSLASGLQVHAQLVKSGFGDDVYVGNSLVEMYMKSKCLADGTMAFAEIRCKDVVSWTGM 316

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH 385
                  GE   A+    +M L+G+  N +T A+  N C+ +  L  GR +H   +K G 
Sbjct: 317 AAGCLHCGEPSKAIGILSQMMLDGVMPNSYTFATSANACASLTDLDEGRKVHGYVIKLGD 376

Query: 386 LLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRM 445
             D+ V+ AL+ MYAKCGS+  A  VF+    R   SW  MI G+  +G  ++A+E F  
Sbjct: 377 DSDIGVNNALIDMYAKCGSVACAHKVFQSMQQRPVISWTAMIMGFAHNGRAQEAVEVFDD 436

Query: 446 MLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAG 505
           ML +G  P+ +T + +L ACS  G ++EG  +F++++  +GI P   H+ACM+D+LG+AG
Sbjct: 437 MLLKGVAPNRVTMICILYACSQGGFVDEGWIYFNAMEDKFGIQPGEDHYACMVDLLGKAG 496

Query: 506 KFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSD 565
              E E  I+     P  LVW+ LLGAC  HGN  +  + AE  L LE    S Y+   +
Sbjct: 497 HIEEAEELISRMPFPPGVLVWQALLGACHRHGNEAVGRRAAEHALALENDDPSTYMLLCN 556

Query: 566 ISATQGRWNDFSGVRALLSSQGIKKEPSCSWIE 598
             A Q  W+     R L+ ++ I K P  SW +
Sbjct: 557 TLAGQHDWDGARRARGLMGAE-ILKLPGSSWFQ 588



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 124/443 (27%), Positives = 219/443 (49%), Gaps = 9/443 (2%)

Query: 6   RVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG--FAN 63
           RV   MP  N VSW+A + G A+ G  +  + LF  M+      ++F+L++ L    FA 
Sbjct: 98  RVLDEMPHRNAVSWSAAIAGLAQGGRPRDALALFIRMRLAGCPPNEFALASALNASSFAP 157

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
           +G   A Q ++A+++RLG     FL+ + +   ++ G  ++A+++F      D+V+W  +
Sbjct: 158 AGTGCARQ-LYALSVRLGFDSSVFLTNAFLAAMARHGQLEDAVRLFNGSSVRDIVSWNTL 216

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    +    Q       ++RE +V+ + F  ++++     +     G  +HA + K GF
Sbjct: 217 LAGFARHWSVQGWILWRRMVRE-AVRADGFSFSTVLSGLAASTSLASGLQVHAQLVKSGF 275

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D  VGN+LV MYM++  ++ G+  F  I  +D VSW  + +       P + + I  Q
Sbjct: 276 GDDVYVGNSLVEMYMKSKCLADGTMAFAEIRCKDVVSWTGMAAGCLHCGEPSKAIGILSQ 335

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M+L G  PN  TF     AC+SL+D+  G+++H + IK   D +  V  +L+DMY K G 
Sbjct: 336 MMLDGVMPNSYTFATSANACASLTDLDEGRKVHGYVIKLGDDSDIGVNNALIDMYAKCGS 395

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNG 363
           +  A   F S+  + + ++TA+I  +A  G A+ A++ F  M L+G+  N  T+   L  
Sbjct: 396 VACAHKVFQSMQQRPVISWTAMIMGFAHNGRAQEAVEVFDDMLLKGVAPNRVTMICILYA 455

Query: 364 CSPVATLANGRL-LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD-TA 421
           CS    +  G +  +++  K G          +V +  K G I++AE +           
Sbjct: 456 CSQGGFVDEGWIYFNAMEDKFGIQPGEDHYACMVDLLGKAGHIEEAEELISRMPFPPGVL 515

Query: 422 SWNMMIGGYVKHG---LGEKALE 441
            W  ++G   +HG   +G +A E
Sbjct: 516 VWQALLGACHRHGNEAVGRRAAE 538



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/314 (33%), Positives = 150/314 (47%), Gaps = 14/314 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A R+F      ++VSWN LL G+A     Q  + L+  M     +   FS STVL G
Sbjct: 195 LEDAVRLFNGSSVRDIVSWNTLLAGFARHWSVQGWI-LWRRMVREAVRADGFSFSTVLSG 253

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMY--SKCGLADNALKVFYRIKDPDVV 118
            A S  + +G  VHA  ++ G   D ++  SLV+MY  SKC LAD  +  F  I+  DVV
Sbjct: 254 LAASTSLASGLQVHAQLVKSGFGDDVYVGNSLVEMYMKSKC-LADGTM-AFAEIRCKDVV 311

Query: 119 AW-GAIITCLDQQGCCQEAAK---IFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESI 174
           +W G    CL     C E +K   I + M    V PN +   +   A     D   G  +
Sbjct: 312 SWTGMAAGCLH----CGEPSKAIGILSQMMLDGVMPNSYTFATSANACASLTDLDEGRKV 367

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H  + K G +SD  V NAL+ MY + G V+   +VF+++  +  +SW A+   F      
Sbjct: 368 HGYVIKLGDDSDIGVNNALIDMYAKCGSVACAHKVFQSMQQRPVISWTAMIMGFAHNGRA 427

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFG-KQLHAHTIKHSLDGNHVVGTS 293
            + + +F  MLLKG  PN  T I IL ACS    V  G    +A   K  +         
Sbjct: 428 QEAVEVFDDMLLKGVAPNRVTMICILYACSQGGFVDEGWIYFNAMEDKFGIQPGEDHYAC 487

Query: 294 LVDMYDKSGCLEDA 307
           +VD+  K+G +E+A
Sbjct: 488 MVDLLGKAGHIEEA 501



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 173/369 (46%), Gaps = 6/369 (1%)

Query: 156 TSLVRATTETGDQRCGESIHAVICKYG-FESDTLVGNALVSMYMENGRVSYGSRVFEAIA 214
            +L++ +  T D R   ++HA + K G       + N L+  Y +      G RV + + 
Sbjct: 45  AALLQRSGATADPRLAAALHAALLKPGVLACHVFLHNHLLIAYFKCRLHRRGLRVLDEMP 104

Query: 215 HQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFG-- 272
           H+++VSW+A  +       P   L +F +M L G  PN       L A SS +  G G  
Sbjct: 105 HRNAVSWSAAIAGLAQGGRPRDALALFIRMRLAGCPPNEFALASALNA-SSFAPAGTGCA 163

Query: 273 KQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQA 332
           +QL+A +++   D +  +  + +    + G LEDA   F+  + +D+ ++  ++  +A+ 
Sbjct: 164 RQLYALSVRLGFDSSVFLTNAFLAAMARHGQLEDAVRLFNGSSVRDIVSWNTLLAGFARH 223

Query: 333 GEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVS 392
              +  +  +R+M  E ++++ F+ ++ L+G +   +LA+G  +H+  VK+G   D++V 
Sbjct: 224 WSVQGWI-LWRRMVREAVRADGFSFSTVLSGLAASTSLASGLQVHAQLVKSGFGDDVYVG 282

Query: 393 TALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV 452
            +LV MY K   + D    F     +D  SW  M  G +  G   KA+     M+ +G +
Sbjct: 283 NSLVEMYMKSKCLADGTMAFAEIRCKDVVSWTGMAAGCLHCGEPSKAIGILSQMMLDGVM 342

Query: 453 PDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIEN 512
           P+  TF    +AC+ +  ++EG+K    + K+ G    I     +ID+  + G       
Sbjct: 343 PNSYTFATSANACASLTDLDEGRKVHGYVIKL-GDDSDIGVNNALIDMYAKCGSVACAHK 401

Query: 513 FITETKLTP 521
                +  P
Sbjct: 402 VFQSMQQRP 410


>gi|125555089|gb|EAZ00695.1| hypothetical protein OsI_22717 [Oryza sativa Indica Group]
          Length = 992

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 175/591 (29%), Positives = 320/591 (54%), Gaps = 3/591 (0%)

Query: 7   VFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY 66
           +F S+ E + + WN+L++GY  +     VM     M+         ++ +V+    ++  
Sbjct: 401 LFSSVTEKSQLLWNSLISGYLVNNKWNMVMGSVRRMQIEGVDPDALTVISVISKCRHTED 460

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           +  G+ +HA A+R    L++ +  +L+ MY+ CG      K+F+ ++   +++W  II+ 
Sbjct: 461 LHVGKSIHAYAVRSRLELNESVMNALLAMYADCGQLSICCKLFHTMEVRTLISWNTIISG 520

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
             + G      + F  MR + ++ +   L +L+ + +   D   GES+H++  + G   D
Sbjct: 521 FAENGDSVACLRFFCQMRLADMQFDLVTLIALISSLSAIEDITVGESVHSLAIRSGCNLD 580

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             V NAL++MY   G +  G ++F++++  +++S+NAL + ++      + L +FY M+ 
Sbjct: 581 VSVANALITMYTNCGIIQAGEKLFDSLSSVNTISYNALMTGYRKNNLFKEILPLFYHMIK 640

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
              KPN+ T + +L  C S      GK +H++ I++       + TS + MY +   LE 
Sbjct: 641 NDQKPNIITLLNLLPICHSQLQ---GKTVHSYAIRNFSKLETSLFTSAICMYSRFNNLEY 697

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
               F  +  ++   + AI+++  Q  +A +A   FR+++   +K++  T+ + ++ CS 
Sbjct: 698 CHNLFCLVGERNNIVWNAILSACVQCKQAGVAFDYFRQIQFLNVKTDAVTMLALISACSQ 757

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMM 426
           +        + +IA++ G    + V  AL+ M+++CGSI  A  +F  S  +D+ SW+ M
Sbjct: 758 LGKADLAECVTAIALQKGFDGTIVVLNALIDMHSRCGSISFARKIFDISMEKDSVSWSTM 817

Query: 427 IGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYG 486
           I  Y  HG G  AL+ F MM+  G  PD+ITFV VLSACS  G +E+G+  F S+   +G
Sbjct: 818 INAYSMHGDGGSALDLFLMMVSTGIKPDDITFVSVLSACSRSGFLEQGRTLFRSMLADHG 877

Query: 487 ITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDA 546
           ITP ++H+ACM+D+LGR G   E  + +T     P+  + E+LLGAC +HGN +L E   
Sbjct: 878 ITPRMEHYACMVDLLGRTGHLDEAYDIVTTMPFRPSKSLLESLLGACRFHGNSKLGESVG 937

Query: 547 EKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           + L E +     +YV  S+I A+ G+W+D+  +R+ + ++G+ K+   S I
Sbjct: 938 KILTESDHGNPRSYVMLSNIYASAGKWSDYERLRSDMEAKGLIKDVGVSLI 988



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 140/534 (26%), Positives = 267/534 (50%), Gaps = 7/534 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++L++RVF  M   +++SWNA+++GY+ +G   +       M+    + +  SL  ++  
Sbjct: 193 VDLSRRVFDGMKSRDLISWNAMISGYSLNGCLLEAAEALKQMQQDGFRPNASSLVGIVSM 252

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +  G   AG  +HA A++ G   D+ ++ + + MY+  G   ++L +F++    ++V+ 
Sbjct: 253 VSGLGVRDAGDPLHAFALKSGVLGDESVTPAFISMYAAFGHLSSSLSLFHQSLVDNLVSC 312

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            ++I+   Q G  ++A  +F LMR   + PN   + S++   +       GES+H ++ K
Sbjct: 313 NSMISVCMQHGAWEKAFGVFRLMRCKGLVPNLVTVVSILPCCSNFFGINHGESVHGMVIK 372

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
           +G      V +ALVSMY + G +     +F ++  +  + WN+L S +      +  +  
Sbjct: 373 FGLAEQVSVVSALVSMYSKLGDLDSAVFLFSSVTEKSQLLWNSLISGYLVNNKWNMVMGS 432

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
             +M ++G  P+  T I ++  C    D+  GK +HA+ ++  L+ N  V  +L+ MY  
Sbjct: 433 VRRMQIEGVDPDALTVISVISKCRHTEDLHVGKSIHAYAVRSRLELNESVMNALLAMYAD 492

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G L      F ++  + L ++  II+ +A+ G++   L+ F +MRL  ++ +  TL + 
Sbjct: 493 CGQLSICCKLFHTMEVRTLISWNTIISGFAENGDSVACLRFFCQMRLADMQFDLVTLIAL 552

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           ++  S +  +  G  +HS+A+++G  LD+ V+ AL+ MY  CG I   E +F   +  +T
Sbjct: 553 ISSLSAIEDITVGESVHSLAIRSGCNLDVSVANALITMYTNCGIIQAGEKLFDSLSSVNT 612

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFS 479
            S+N ++ GY K+ L ++ L  F  M+     P+ IT + +L  C H  L  +GK  H  
Sbjct: 613 ISYNALMTGYRKNNLFKEILPLFYHMIKNDQKPNIITLLNLLPIC-HSQL--QGKTVHSY 669

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGAC 533
           +I+    +  ++  F   I +  R        N         N +VW  +L AC
Sbjct: 670 AIRNFSKLETSL--FTSAICMYSRFNNLEYCHNLFCLVG-ERNNIVWNAILSAC 720



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 121/425 (28%), Positives = 206/425 (48%)

Query: 51  KFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFY 110
            F+   V++  A    ++ G+ VH   +R G   +  +  +L+DMY+K G  D + +VF 
Sbjct: 142 NFTFPPVIRACAAVSCLRLGKEVHCRVVRTGHGGNVGVQTALLDMYAKSGQVDLSRRVFD 201

Query: 111 RIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC 170
            +K  D+++W A+I+     GC  EAA+    M++   +PN   L  +V   +  G +  
Sbjct: 202 GMKSRDLISWNAMISGYSLNGCLLEAAEALKQMQQDGFRPNASSLVGIVSMVSGLGVRDA 261

Query: 171 GESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQD 230
           G+ +HA   K G   D  V  A +SMY   G +S    +F      + VS N++ S    
Sbjct: 262 GDPLHAFALKSGVLGDESVTPAFISMYAAFGHLSSSLSLFHQSLVDNLVSCNSMISVCMQ 321

Query: 231 YESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVV 290
           + + ++   +F  M  KG  PN+ T + IL  CS+   +  G+ +H   IK  L     V
Sbjct: 322 HGAWEKAFGVFRLMRCKGLVPNLVTVVSILPCCSNFFGINHGESVHGMVIKFGLAEQVSV 381

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
            ++LV MY K G L+ A   F S+  K    + ++I+ Y    +  M +   R+M++EG+
Sbjct: 382 VSALVSMYSKLGDLDSAVFLFSSVTEKSQLLWNSLISGYLVNNKWNMVMGSVRRMQIEGV 441

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
             +  T+ S ++ C     L  G+ +H+ AV++   L+  V  AL+AMYA CG +     
Sbjct: 442 DPDALTVISVISKCRHTEDLHVGKSIHAYAVRSRLELNESVMNALLAMYADCGQLSICCK 501

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           +F    +R   SWN +I G+ ++G     L  F  M       D +T + ++S+ S +  
Sbjct: 502 LFHTMEVRTLISWNTIISGFAENGDSVACLRFFCQMRLADMQFDLVTLIALISSLSAIED 561

Query: 471 IEEGK 475
           I  G+
Sbjct: 562 ITVGE 566



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 168/368 (45%), Gaps = 5/368 (1%)

Query: 109 FYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRE-SSVKPNQFVLTSLVRATTETGD 167
           FYR +  +V      + C    G  +E   +  L RE  +   + F    ++RA      
Sbjct: 102 FYRGR-AEVYDLNIAVRCFSDHGFHRE---LLGLYREVCAFGSDNFTFPPVIRACAAVSC 157

Query: 168 QRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSR 227
            R G+ +H  + + G   +  V  AL+ MY ++G+V    RVF+ +  +D +SWNA+ S 
Sbjct: 158 LRLGKEVHCRVVRTGHGGNVGVQTALLDMYAKSGQVDLSRRVFDGMKSRDLISWNAMISG 217

Query: 228 FQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGN 287
           +       +      QM   GF+PN  + + I+   S L     G  LHA  +K  + G+
Sbjct: 218 YSLNGCLLEAAEALKQMQQDGFRPNASSLVGIVSMVSGLGVRDAGDPLHAFALKSGVLGD 277

Query: 288 HVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL 347
             V  + + MY   G L  +   F      +L +  ++I+   Q G  E A   FR MR 
Sbjct: 278 ESVTPAFISMYAAFGHLSSSLSLFHQSLVDNLVSCNSMISVCMQHGAWEKAFGVFRLMRC 337

Query: 348 EGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDD 407
           +G+  N  T+ S L  CS    + +G  +H + +K G    + V +ALV+MY+K G +D 
Sbjct: 338 KGLVPNLVTVVSILPCCSNFFGINHGESVHGMVIKFGLAEQVSVVSALVSMYSKLGDLDS 397

Query: 408 AEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSH 467
           A  +F     +    WN +I GY+ +      + + R M  EG  PD +T + V+S C H
Sbjct: 398 AVFLFSSVTEKSQLLWNSLISGYLVNNKWNMVMGSVRRMQIEGVDPDALTVISVISKCRH 457

Query: 468 MGLIEEGK 475
              +  GK
Sbjct: 458 TEDLHVGK 465



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 90/191 (47%), Gaps = 6/191 (3%)

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
           S+ FT    +  C+ V+ L  G+ +H   V+TGH  ++ V TAL+ MYAK G +D +  V
Sbjct: 140 SDNFTFPPVIRACAAVSCLRLGKEVHCRVVRTGHGGNVGVQTALLDMYAKSGQVDLSRRV 199

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLI 471
           F G   RD  SWN MI GY  +G   +A EA + M  +G+ P+  + V ++S  S +G+ 
Sbjct: 200 FDGMKSRDLISWNAMISGYSLNGCLLEAAEALKQMQQDGFRPNASSLVGIVSMVSGLGVR 259

Query: 472 EEGKK-HFSSIKK-IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENL 529
           + G   H  ++K  + G       F  M    G           +    L  N +   ++
Sbjct: 260 DAGDPLHAFALKSGVLGDESVTPAFISMYAAFGHLSSSLS----LFHQSLVDNLVSCNSM 315

Query: 530 LGACSWHGNIE 540
           +  C  HG  E
Sbjct: 316 ISVCMQHGAWE 326


>gi|223948379|gb|ACN28273.1| unknown [Zea mays]
          Length = 648

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 167/511 (32%), Positives = 271/511 (53%), Gaps = 6/511 (1%)

Query: 95  MYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESS-VKPNQF 153
           MY KCG  D A +VF  ++D +VV+W A++    + G      ++   MR +S   PN++
Sbjct: 1   MYVKCGELDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEY 60

Query: 154 VLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAI 213
            L++ ++A    GD   G  IH +  + G++   +V ++LV +Y + GR+    RVF+  
Sbjct: 61  TLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGA 120

Query: 214 AHQDSV-SWNALFSRFQDYESPDQGLRIFYQMLLK--GFKPNMCTFIVILKACSSLSDVG 270
                + +WNA+ S +         L +F +M       +P+  TF  +LKACS L    
Sbjct: 121 GLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATR 180

Query: 271 FGKQLHAHTIKH--SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITS 328
            G Q+HA       S   N ++  +LVDMY K   L  A   F+ L  K++  +TA++  
Sbjct: 181 EGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVG 240

Query: 329 YAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLD 388
           +AQ G+   AL+ FR+    G + +   L+S +   +  A +  GR +H   +K     D
Sbjct: 241 HAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGTD 300

Query: 389 MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
           +    ++V MY KCG  D+AE +F+     +  SW  M+ G  KHGLG +A+  F  M  
Sbjct: 301 VSAGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRA 360

Query: 449 EGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFT 508
            G  PDE+T++ +LSACSH GL++E +++FS I++   + P  +H+ACM+D+LGRAG+  
Sbjct: 361 GGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELR 420

Query: 509 EIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISA 568
           E  + I    + P   VW+ LL AC  H ++ +  +  + LL ++     NYV  S++ A
Sbjct: 421 EARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAMDGDNPVNYVTLSNVLA 480

Query: 569 TQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
             G W +   VR  +  +G+KK+  CSW+EV
Sbjct: 481 EAGEWRECHKVRDAMRRRGLKKQGGCSWVEV 511



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 179/371 (48%), Gaps = 6/371 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDM-EKKFSKFSLSTVLK 59
           ++LA  VF  M + NVVSW AL+ G+   GD    + L   M+   E   ++++LS  LK
Sbjct: 8   LDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLK 67

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
                G   AG  +H + +R G      ++ SLV +YSK G   +A +VF        + 
Sbjct: 68  ACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIA 127

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMR--ESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
            W A+++     G  ++A  +F  MR  E   +P++F   SL++A +  G  R G  +HA
Sbjct: 128 TWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHA 187

Query: 177 VICKYGFE--SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
            +   GF   S+ ++  ALV MY++  R+    +VFE +  ++ + W A+          
Sbjct: 188 AMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQV 247

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSL 294
            + L +F +    G +P+      ++   +  + V  G+Q+H + IK     +   G S+
Sbjct: 248 TEALELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGTDVSAGNSI 307

Query: 295 VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNE 354
           VDMY K G  ++A   F  +   ++ ++T ++    + G    A+  F +MR  G++ +E
Sbjct: 308 VDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDE 367

Query: 355 FTLASCLNGCS 365
            T  + L+ CS
Sbjct: 368 VTYLALLSACS 378



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 87/166 (52%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + +A +VF+ +   NV+ W A++ G+A+ G   + + LF        +     LS+V+  
Sbjct: 216 LPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGV 275

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A+   ++ G+ VH   I+     D     S+VDMY KCGL D A ++F  ++ P+VV+W
Sbjct: 276 LADFALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPDEAERMFREMRAPNVVSW 335

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
             ++  L + G  +EA  +F  MR   V+P++    +L+ A +  G
Sbjct: 336 TTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACSHAG 381


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 178/577 (30%), Positives = 299/577 (51%), Gaps = 42/577 (7%)

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADN------ALKVFYRIKDPD 116
           N   +++ +++HA  I++G     +    L++    C L+ +      A+ VF  I++P+
Sbjct: 42  NCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEF---CILSPHFEGLPYAISVFKTIQEPN 98

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHA 176
           ++ W  +            A K++  M    + PN +    ++++  ++   + G+ IH 
Sbjct: 99  LLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHG 158

Query: 177 VICKYGFESDTLVGNALVSMYMENGRVS-----------------------YGSR----- 208
            + K G + D  V  +L+SMY++NGR+                        Y SR     
Sbjct: 159 HVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIEN 218

Query: 209 ---VFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSS 265
              +F+ I  +D VSWNA+ S + +  +  + L +F  M+    +P+  T + ++ AC+ 
Sbjct: 219 AQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQ 278

Query: 266 LSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
              +  G+Q+H     H    N  +  +L+D+Y K G LE A   F+ L  KD+ ++  +
Sbjct: 279 SGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTL 338

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVK--T 383
           I  Y      + AL  F++M   G   N+ T+ S L  C+ +  +  GR +H    K   
Sbjct: 339 IGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLK 398

Query: 384 GHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF 443
           G      + T+L+ MYAKCG I+ A  VF     +  +SWN MI G+  HG  + + + F
Sbjct: 399 GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLF 458

Query: 444 RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGR 503
             M   G  PD+ITFV +LSACSH G+++ G+  F ++ + Y +TP ++H+ CMID+LG 
Sbjct: 459 SRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGH 518

Query: 504 AGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFP 563
           +G F E E  I   ++ P+ ++W +LL AC  HGN+EL E  AE L+++EP+   +YV  
Sbjct: 519 SGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLL 578

Query: 564 SDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           S+I A+ GRWN+ +  RALL+ +G+KK P CS IE+D
Sbjct: 579 SNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEID 615



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 119/407 (29%), Positives = 200/407 (49%), Gaps = 33/407 (8%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A  VFK++ E N++ WN +  G+A S D    + L+  M  +    + ++   VLK 
Sbjct: 84  LPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKS 143

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDM------------------------- 95
            A S   K GQ +H   ++LGC LD ++  SL+ M                         
Sbjct: 144 CAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSY 203

Query: 96  ------YSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK 149
                 Y+  G  +NA K+F  I   DVV+W A+I+   + G  +EA ++F  M +++V+
Sbjct: 204 TALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVR 263

Query: 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRV 209
           P++  + ++V A  ++G    G  +H  I  +GF S+  + NAL+ +Y + G +     +
Sbjct: 264 PDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGL 323

Query: 210 FEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDV 269
           FE + ++D +SWN L   +       + L +F +ML  G  PN  T + IL AC+ L  +
Sbjct: 324 FERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 383

Query: 270 GFGKQLHAHTIKH--SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIIT 327
             G+ +H +  K    +     + TSL+DMY K G +E A   F+S+ +K L ++ A+I 
Sbjct: 384 DIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIF 443

Query: 328 SYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
            +A  G A+ +   F +MR  GI+ ++ T    L+ CS    L  GR
Sbjct: 444 GFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGR 490



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 154/322 (47%), Gaps = 17/322 (5%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A+++F  +P  +VVSWNA+++GYAE+G+ ++ + LF  M     +  + ++ TV+  
Sbjct: 216 IENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSA 275

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A SG I+ G+ VH      G   +  +  +L+D+YSKCG  + A  +F R+   DV++W
Sbjct: 276 CAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISW 335

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I         +EA  +F  M  S   PN   + S++ A    G    G  IH  I K
Sbjct: 336 NTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDK 395

Query: 181 Y--GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
              G  + + +  +L+ MY + G +    +VF +I H+   SWNA+   F  +   D   
Sbjct: 396 RLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASF 455

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            +F +M   G +P+  TF+ +L ACS    +  G+              H+  T   D Y
Sbjct: 456 DLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGR--------------HIFRTMTQD-Y 500

Query: 299 DKSGCLEDAGVAFDSLANKDLF 320
             +  LE  G   D L +  LF
Sbjct: 501 KMTPKLEHYGCMIDLLGHSGLF 522


>gi|449519412|ref|XP_004166729.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial-like [Cucumis sativus]
          Length = 781

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 191/602 (31%), Positives = 311/602 (51%), Gaps = 12/602 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  VF+++ + ++VSWN +L+G+ +S   +  +     M     KF   + +T L  
Sbjct: 124 LERAFSVFQNLHDPDIVSWNTILSGFEKS---ENALSFALRMNLNGVKFDSVTYTTALSF 180

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
             +      G  +H +A++ G   D F+  +LV MYS+     +A KVF  +   D V+W
Sbjct: 181 CLDGEEFLFGWQLHTLALKCGFKGDVFVGNALVTMYSRWEHLVDARKVFDEMPSRDRVSW 240

Query: 121 GAIITCLDQQG-CCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            A+IT   Q+G    +A  +F  M    VK +   +T  +       +   G+ IH +  
Sbjct: 241 SAMITGYAQEGDNGLQAILVFVQMVREGVKFDNVPITGALSVCGHERNLELGKQIHCLAV 300

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
           K G E+ T VGN L+S Y +   +     VFE I  ++ +SW  + S +++       + 
Sbjct: 301 KTGHETHTSVGNVLISTYSKCEIIEDAKAVFELINDRNVISWTTMISLYEE-----GAVS 355

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           +F +M L G  PN  TFI +L A +  + V  G  +H   IK        VG SL+ MY 
Sbjct: 356 LFNKMRLDGVYPNDVTFIGLLHAITIRNMVEQGLMVHGLCIKADFVSELTVGNSLITMYA 415

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K   ++DA   F  L  +++ ++ A+I+ YAQ    + AL+ F    +E  K NE+T  S
Sbjct: 416 KFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAIME-YKPNEYTFGS 474

Query: 360 CLNGCSPVA--TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
            LN  S     +L +G+  HS  +K G  +D  +S AL+ MYAK GSI +++ VF  ++ 
Sbjct: 475 VLNAISAGEDISLKHGQRCHSHLIKVGLNVDPIISGALLDMYAKRGSIQESQRVFNETSK 534

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           +   +W  +I GY +HG  E  ++ F  M  E   PD + F+ VL+ACS   +++ G++ 
Sbjct: 535 QSQFAWTALISGYAQHGDYESVIKLFEEMEKERIKPDAVIFLSVLTACSRNRMVDMGRQF 594

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F+ + K + I P  +H++CM+D+LGRAG+  E E  +      P     ++LLGAC  HG
Sbjct: 595 FNMMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILARIPGGPGVSALQSLLGACRTHG 654

Query: 538 NIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
           N+E+ E+ A  L++ EP     YV  S++ A +G W   + VR  +  +G+ KE   SW+
Sbjct: 655 NVEMAERIANDLMKKEPLESGPYVLMSNLYAQKGDWEKVAKVRKEMRERGVMKEIGFSWV 714

Query: 598 EV 599
           +V
Sbjct: 715 DV 716



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 159/567 (28%), Positives = 271/567 (47%), Gaps = 29/567 (5%)

Query: 7   VFKSMPELNVVSWN-ALLNGYAESGDGQKVMHLFCSMK-DMEKKFSKFSLSTVLKGFANS 64
           +F   P  N  S+N  LLN     G  Q +     + +  ++    +F+L   LK  A  
Sbjct: 29  LFDQSPPPNAASFNRVLLNYLPRDGAFQSLRFFKNNFRWGLDGNADEFTLVLALK--ACC 86

Query: 65  GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAII 124
           G+ K G+ +H   I  G      +S SL++MY K G  + A  VF  + DPD+V+W  I+
Sbjct: 87  GFPKLGRQIHGFVISSGFVSHITVSNSLMNMYCKSGQLERAFSVFQNLHDPDIVSWNTIL 146

Query: 125 TCLDQQGCCQEAAKIFNL-MRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +  ++     E A  F L M  + VK +    T+ +    +  +   G  +H +  K GF
Sbjct: 147 SGFEK----SENALSFALRMNLNGVKFDSVTYTTALSFCLDGEEFLFGWQLHTLALKCGF 202

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRF-QDYESPDQGLRIFY 242
           + D  VGNALV+MY     +    +VF+ +  +D VSW+A+ + + Q+ ++  Q + +F 
Sbjct: 203 KGDVFVGNALVTMYSRWEHLVDARKVFDEMPSRDRVSWSAMITGYAQEGDNGLQAILVFV 262

Query: 243 QMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           QM+ +G K +       L  C    ++  GKQ+H   +K   + +  VG  L+  Y K  
Sbjct: 263 QMVREGVKFDNVPITGALSVCGHERNLELGKQIHCLAVKTGHETHTSVGNVLISTYSKCE 322

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            +EDA   F+ + ++++ ++T +I+ Y +      A+  F KMRL+G+  N+ T    L+
Sbjct: 323 IIEDAKAVFELINDRNVISWTTMISLYEEG-----AVSLFNKMRLDGVYPNDVTFIGLLH 377

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
             +    +  G ++H + +K   + ++ V  +L+ MYAK   + DA  VF     R+  S
Sbjct: 378 AITIRNMVEQGLMVHGLCIKADFVSELTVGNSLITMYAKFEFMQDASRVFIELPYREIIS 437

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS---HMGLIEEGKKHFS 479
           WN +I GY ++ L ++ALEAF   + E Y P+E TF  VL+A S    + L    + H  
Sbjct: 438 WNALISGYAQNALCQEALEAFLYAIME-YKPNEYTFGSVLNAISAGEDISLKHGQRCHSH 496

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNI 539
            IK    + P I     ++D+  + G   E +    ET    +   W  L+   + HG  
Sbjct: 497 LIKVGLNVDPIIS--GALLDMYAKRGSIQESQRVFNETS-KQSQFAWTALISGYAQHG-- 551

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDI 566
                D E +++L  +ME   + P  +
Sbjct: 552 -----DYESVIKLFEEMEKERIKPDAV 573



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 105/363 (28%), Positives = 164/363 (45%), Gaps = 24/363 (6%)

Query: 209 VFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNM--CTFIVILKACSSL 266
           +F+     ++ S+N +   +   +   Q LR F      G   N    T ++ LKAC   
Sbjct: 29  LFDQSPPPNAASFNRVLLNYLPRDGAFQSLRFFKNNFRWGLDGNADEFTLVLALKACCGF 88

Query: 267 SDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
             +G  +Q+H   I      +  V  SL++MY KSG LE A   F +L + D+ ++  I+
Sbjct: 89  PKLG--RQIHGFVISSGFVSHITVSNSLMNMYCKSGQLERAFSVFQNLHDPDIVSWNTIL 146

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL 386
           + + +   +E AL    +M L G+K +  T  + L+ C        G  LH++A+K G  
Sbjct: 147 SGFEK---SENALSFALRMNLNGVKFDSVTYTTALSFCLDGEEFLFGWQLHTLALKCGFK 203

Query: 387 LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHG-LGEKALEAFRM 445
            D+FV  ALV MY++   + DA  VF     RD  SW+ MI GY + G  G +A+  F  
Sbjct: 204 GDVFVGNALVTMYSRWEHLVDARKVFDEMPSRDRVSWSAMITGYAQEGDNGLQAILVFVQ 263

Query: 446 MLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTIKHFACMIDILGRA 504
           M+ EG   D +     LS C H   +E GK+ H  ++K     T    H +    ++   
Sbjct: 264 MVREGVKFDNVPITGALSVCGHERNLELGKQIHCLAVK-----TGHETHTSVGNVLISTY 318

Query: 505 GKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564
            K   IE+     +L        N     SW   I L E+ A  L     KM  + V+P+
Sbjct: 319 SKCEIIEDAKAVFELI-------NDRNVISWTTMISLYEEGAVSLFN---KMRLDGVYPN 368

Query: 565 DIS 567
           D++
Sbjct: 369 DVT 371


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 185/548 (33%), Positives = 292/548 (53%), Gaps = 3/548 (0%)

Query: 54  LSTVLKGFANSGYIKAGQVVHAMAIRLGCAL-DKFLSCSLVDMYSKCGLADNALKVFYRI 112
           L+++L+    +G ++ G+++HA  +  G A    FL+  L+ MYS C    +AL++F  +
Sbjct: 23  LASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAM 82

Query: 113 KDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172
              + V+W  +++ L Q     +A   F  MR + V P +F L+S  RA    G    G 
Sbjct: 83  PRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPGA 142

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
            +H V  + GF+++  V + L  MY + G +S   RVF+ +  +D+V+W A+   +    
Sbjct: 143 QLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNG 202

Query: 233 SPDQGLRIFYQMLLKGF-KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
           S +  +  F  M  +G    +   F  +L A   L D    K +H    K   +    V 
Sbjct: 203 SLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVR 262

Query: 292 TSLVDMYDKSGCLEDAGVAFD-SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGI 350
            +L+DMY KS  +E A           ++ + T++I  Y +    E AL  + ++R +G+
Sbjct: 263 NALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGV 322

Query: 351 KSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
           + NEFT +S + GC+  A L  G  LH+  +KT  + D FV + LV MY KCG I  +  
Sbjct: 323 EPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQ 382

Query: 411 VFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGL 470
           +F     R   +WN +I  + +HG G +A++AF  M+  G  P+ I FV +L+ACSH GL
Sbjct: 383 LFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGL 442

Query: 471 IEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLL 530
           ++EG K+F S+K+ +GI P  +H++C+ID  GRAG+  E   FI+E  + PNA  W +LL
Sbjct: 443 VDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLL 502

Query: 531 GACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKK 590
           GAC   G+ EL E  A+ L++LEP     +V  S I A+ G+W D   VR L+    IKK
Sbjct: 503 GACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKK 562

Query: 591 EPSCSWIE 598
            P  SW++
Sbjct: 563 LPGFSWVD 570



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 142/504 (28%), Positives = 239/504 (47%), Gaps = 30/504 (5%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A R+F +MP  N VSW  L++G +++      +  F +M+      ++F+LS+  +  A 
Sbjct: 75  ALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAA 134

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G    G  +H + +RLG   + F++ +L DMYSKCGL   A +VF ++   D VAW A+
Sbjct: 135 LGAPLPGAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAM 194

Query: 124 ITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I    + G  + A   F ++ RE  V  +Q V  S++ A+    D    +SIH  + K G
Sbjct: 195 IDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAG 254

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWN-----ALFSRFQDYESPDQG 237
           FE +  V NAL+ MY ++  V   SRV +     D   WN     ++   + + +  ++ 
Sbjct: 255 FELEVAVRNALIDMYAKSMDVESASRVLKI----DPGGWNVVSGTSMIDGYIETDCVEEA 310

Query: 238 LRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDM 297
           L I+ ++  +G +PN  TF  ++K C+  + +  G QLHA  IK  L  +  VG++LVDM
Sbjct: 311 LVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDM 370

Query: 298 YDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
           Y K G +  +   F+ +  +   A+ A+I  +AQ G    A++ F +M   GI+ N    
Sbjct: 371 YGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAF 430

Query: 358 ASCLNGCSPVATLANG-------RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
            S L  CS    +  G       +  H I  K  H       + ++  Y + G +D+A  
Sbjct: 431 VSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHY------SCIIDTYGRAGRLDEAYK 484

Query: 411 VFKGSALRDTA-SWNMMIGGYVKHG---LGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
                 ++  A  W  ++G     G   LGE A +   M L+ G     ++   + ++  
Sbjct: 485 FISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNL-MKLEPGNTGIHVSLSGIYASLG 543

Query: 467 HMGLIEEGKKHF--SSIKKIYGIT 488
               ++  +K    S IKK+ G +
Sbjct: 544 QWEDVKAVRKLMRDSRIKKLPGFS 567



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 92/167 (55%), Gaps = 1/167 (0%)

Query: 1   MELAKRVFKSMPE-LNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLK 59
           +E A RV K  P   NVVS  ++++GY E+   ++ + ++  ++    + ++F+ S+++K
Sbjct: 275 VESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIK 334

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
           G A    ++ G  +HA  I+     D F+  +LVDMY KCGL   ++++F  I+    +A
Sbjct: 335 GCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIA 394

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETG 166
           W A+I    Q G  +EA + F+ M  S ++PN     SL+ A +  G
Sbjct: 395 WNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAG 441



 Score = 43.1 bits (100), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 66/177 (37%), Gaps = 43/177 (24%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + L+ ++F  +     ++WNA++N +A+ G G++ +  F  M                  
Sbjct: 377 ISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRM------------------ 418

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-----DP 115
                            I  G   +     SL+   S  GL D  LK FY +K     +P
Sbjct: 419 -----------------IYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEP 461

Query: 116 DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE 172
               +  II    + G   EA   +  + E  +KPN +   SL+ A    G +  GE
Sbjct: 462 KEEHYSCIIDTYGRAGRLDEA---YKFISEMPIKPNAYGWCSLLGACRMRGSKELGE 515


>gi|359474850|ref|XP_002277741.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
 gi|297744624|emb|CBI37886.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 182/598 (30%), Positives = 306/598 (51%), Gaps = 6/598 (1%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A ++F+ +P+ +VVSW+ +++GY  +G  +K M LF  M+      + F++  VL   A 
Sbjct: 45  AGKLFEEIPKRDVVSWSIMIHGYNRNGFRRKSMELFSQMRISSLVPTSFTMVGVLVSIAG 104

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G    GQ VH + ++ G   D  +  +L++ Y+KCG   ++ +VF ++++P +V+  AI
Sbjct: 105 LGDPVLGQCVHGLILKYGLDSDFRVVTALLNAYAKCGNVVDSYRVFEQLENPGLVSCSAI 164

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           ++        +EA  +FN  R+  + PN   + +L+RA      +R  ESIH ++ K   
Sbjct: 165 VSGFVYNELFEEAVVLFNQFRKLGMVPNAATVLTLIRACVALESRRLCESIHGMVVKLSL 224

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
             D  V N+++ MY     +   +RVFE +  +D +SW  + +     E     L +F Q
Sbjct: 225 VLDVAVNNSVLDMYSSMLDLDAATRVFEGMECRDVISWTTMINLLVCLEYASDALMLFRQ 284

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M   G   ++   + ++ AC+ L D+  G+++H   I         +  S++ MY K G 
Sbjct: 285 MRNTGICNDVVVVMNLISACAILGDLKRGREIHTQAIVCGFGSELPLTNSIIAMYSKCGD 344

Query: 304 LEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMR-LEGIKSNEFTLASCLN 362
           L+ +   FD    K L ++TA+I    Q G    ALK   KMR  E    +   L   L+
Sbjct: 345 LDSSRTVFDQTTGKSLVSWTAMILGCVQNGYPREALKLLIKMRGEESFYLDSIMLIGVLS 404

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF-KGSALRDTA 421
               +A L   + LH  A ++G      V  +L++ Y+KCG ++ A  VF +   +RD  
Sbjct: 405 ASGELALLELCQQLHCYAFESGFPRYRLVQNSLISAYSKCGDVEPAYNVFGQMGYIRDIV 464

Query: 422 SWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
           SWN ++ GY  +G GE A+  +  M      PD  T++ VLSACSH GL+++G   F+ +
Sbjct: 465 SWNAILNGYGINGHGEIAVALYHEMRKGRENPDAATYLCVLSACSHSGLVDDGLVIFNQM 524

Query: 482 KKIYGITPTIKHFACMIDILGRAGKFTEIENFITE--TKLTPNALVWENLLGACSWHGNI 539
            +   I P+  H  C++D+L RAG F++   F++    K+ PNA  W  LL  C  HGN+
Sbjct: 525 VEERTIRPSQDHCGCIVDLLARAGCFSDAREFVSRYMEKMGPNA--WRALLSGCQLHGNV 582

Query: 540 ELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
            L E  A ++ EL+P+     V  S++ A+ GR+ D   +RA +  + + K P  S +
Sbjct: 583 GLAELAARRVCELDPEEPGQVVLLSNVYASVGRFQDAEALRASMKKKELIKNPGISLL 640



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/388 (30%), Positives = 203/388 (52%), Gaps = 6/388 (1%)

Query: 86  KFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRE 145
           K LSC     Y K G   NA K+F  I   DVV+W  +I   ++ G  +++ ++F+ MR 
Sbjct: 31  KLLSC-----YLKSGDIINAGKLFEEIPKRDVVSWSIMIHGYNRNGFRRKSMELFSQMRI 85

Query: 146 SSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSY 205
           SS+ P  F +  ++ +    GD   G+ +H +I KYG +SD  V  AL++ Y + G V  
Sbjct: 86  SSLVPTSFTMVGVLVSIAGLGDPVLGQCVHGLILKYGLDSDFRVVTALLNAYAKCGNVVD 145

Query: 206 GSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSS 265
             RVFE + +   VS +A+ S F   E  ++ + +F Q    G  PN  T + +++AC +
Sbjct: 146 SYRVFEQLENPGLVSCSAIVSGFVYNELFEEAVVLFNQFRKLGMVPNAATVLTLIRACVA 205

Query: 266 LSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
           L      + +H   +K SL  +  V  S++DMY     L+ A   F+ +  +D+ ++T +
Sbjct: 206 LESRRLCESIHGMVVKLSLVLDVAVNNSVLDMYSSMLDLDAATRVFEGMECRDVISWTTM 265

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH 385
           I        A  AL  FR+MR  GI ++   + + ++ C+ +  L  GR +H+ A+  G 
Sbjct: 266 INLLVCLEYASDALMLFRQMRNTGICNDVVVVMNLISACAILGDLKRGREIHTQAIVCGF 325

Query: 386 LLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF-R 444
             ++ ++ +++AMY+KCG +D +  VF  +  +   SW  MI G V++G   +AL+   +
Sbjct: 326 GSELPLTNSIIAMYSKCGDLDSSRTVFDQTTGKSLVSWTAMILGCVQNGYPREALKLLIK 385

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIE 472
           M  +E +  D I  + VLSA   + L+E
Sbjct: 386 MRGEESFYLDSIMLIGVLSASGELALLE 413



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 180/380 (47%), Gaps = 10/380 (2%)

Query: 173 SIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYE 232
           SIH    +Y   SD +  + L+S Y+++G +    ++FE I  +D VSW+ +   +    
Sbjct: 12  SIHTSTQRYPHGSDPINYSKLLSCYLKSGDIINAGKLFEEIPKRDVVSWSIMIHGYNRNG 71

Query: 233 SPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGT 292
              + + +F QM +    P   T + +L + + L D   G+ +H   +K+ LD +  V T
Sbjct: 72  FRRKSMELFSQMRISSLVPTSFTMVGVLVSIAGLGDPVLGQCVHGLILKYGLDSDFRVVT 131

Query: 293 SLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS 352
           +L++ Y K G + D+   F+ L N  L + +AI++ +      E A+  F + R  G+  
Sbjct: 132 ALLNAYAKCGNVVDSYRVFEQLENPGLVSCSAIVSGFVYNELFEEAVVLFNQFRKLGMVP 191

Query: 353 NEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVF 412
           N  T+ + +  C  + +      +H + VK   +LD+ V+ +++ MY+    +D A  VF
Sbjct: 192 NAATVLTLIRACVALESRRLCESIHGMVVKLSLVLDVAVNNSVLDMYSSMLDLDAATRVF 251

Query: 413 KGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIE 472
           +G   RD  SW  MI   V       AL  FR M + G   D +  + ++SAC+ +G ++
Sbjct: 252 EGMECRDVISWTTMINLLVCLEYASDALMLFRQMRNTGICNDVVVVMNLISACAILGDLK 311

Query: 473 EGKK-HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALV-WENLL 530
            G++ H  +I  + G    +     +I +  + G          +T  T  +LV W  ++
Sbjct: 312 RGREIHTQAI--VCGFGSELPLTNSIIAMYSKCGDLDSSRTVFDQT--TGKSLVSWTAMI 367

Query: 531 GACSWHGNIELDEKDAEKLL 550
             C  +G      ++A KLL
Sbjct: 368 LGCVQNGY----PREALKLL 383



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 150/314 (47%), Gaps = 11/314 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A RVF+ M   +V+SW  ++N           + LF  M++         +  ++  
Sbjct: 244 LDAATRVFEGMECRDVISWTTMINLLVCLEYASDALMLFRQMRNTGICNDVVVVMNLISA 303

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A  G +K G+ +H  AI  G   +  L+ S++ MYSKCG  D++  VF +     +V+W
Sbjct: 304 CAILGDLKRGREIHTQAIVCGFGSELPLTNSIIAMYSKCGDLDSSRTVFDQTTGKSLVSW 363

Query: 121 GAIITCLDQQGCCQEAAKIFNLMR-ESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
            A+I    Q G  +EA K+   MR E S   +  +L  ++ A+ E       + +H    
Sbjct: 364 TAMILGCVQNGYPREALKLLIKMRGEESFYLDSIMLIGVLSASGELALLELCQQLHCYAF 423

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH-QDSVSWNALFSRFQDYESPDQGL 238
           + GF    LV N+L+S Y + G V     VF  + + +D VSWNA+ + +      +  +
Sbjct: 424 ESGFPRYRLVQNSLISAYSKCGDVEPAYNVFGQMGYIRDIVSWNAILNGYGINGHGEIAV 483

Query: 239 RIFYQMLLKGFKPNMCTFIVILKAC--SSLSDVG---FGKQLHAHTIKHSLDGNHVVGTS 293
            ++++M      P+  T++ +L AC  S L D G   F + +   TI+ S D  H     
Sbjct: 484 ALYHEMRKGRENPDAATYLCVLSACSHSGLVDDGLVIFNQMVEERTIRPSQD--HC--GC 539

Query: 294 LVDMYDKSGCLEDA 307
           +VD+  ++GC  DA
Sbjct: 540 IVDLLARAGCFSDA 553


>gi|302776320|ref|XP_002971335.1| hypothetical protein SELMODRAFT_94945 [Selaginella moellendorffii]
 gi|300161317|gb|EFJ27933.1| hypothetical protein SELMODRAFT_94945 [Selaginella moellendorffii]
          Length = 614

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 182/590 (30%), Positives = 297/590 (50%), Gaps = 70/590 (11%)

Query: 20  NALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIR 79
           N L+  Y + G  +    +F    D  ++ + FS + +L  +A++G+ +           
Sbjct: 51  NLLVQAYGKCGSVRDAREVF----DRIQRRNIFSWTIMLGAYADNGHGRE---------- 96

Query: 80  LGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKI 139
                      +L  MY KCG  + A  VF  + + + V+W A++    Q G C+EA ++
Sbjct: 97  -----------ALGLMYGKCGHLEEAKAVFATLVERNRVSWNAMLAAYAQNGHCEEAVRL 145

Query: 140 FNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYME 199
           + LM    +KP+     S++      G+   G  IH  + + GF S+T + NALVSMY  
Sbjct: 146 YRLMCFEGIKPDATTFVSVLDGWKGEGEH--GRRIHDQVVESGFGSNTTLANALVSMYGS 203

Query: 200 NGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVI 259
            GRV     VF+ IA +  VSWNA+ + +       + + +F++M      P+  +F+ +
Sbjct: 204 GGRVDDARYVFDGIAEKTVVSWNAMLTAYAQNGRYGEAVDLFWKM---DVAPDTVSFVNV 260

Query: 260 LKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK------------------- 300
           L AC    D+  G+ +H H          +V TSLV+MY +                   
Sbjct: 261 LGACM---DIEEGRLVHEHIKASGFPVGVLVSTSLVNMYGRFLRLEEAKQCFEQARERDR 317

Query: 301 ------------SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE 348
                       +GC+E+A   FD +A+KD+  +TA++T+Y++  +A+ AL  +R M LE
Sbjct: 318 VCWNSMVGAYAQNGCMEEAKAVFDRVASKDIVLWTALLTAYSRNEDAKGALLVYRNMDLE 377

Query: 349 GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA 408
           G++ N FT +S ++ C+    LA G+ +H   V  G+  D+ V T LV  Y+KC  +D A
Sbjct: 378 GMEKNRFTFSSIVSVCADAEALAEGQKVHLHTVSVGYDKDVIVGTTLVDFYSKCHDVDTA 437

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM------LDEGYVPDEITFVVVL 462
            +VF G   +D  +WN+MI G+V++G G +A+  ++ M      L  G +PDE+TF+ VL
Sbjct: 438 RSVFDGIEGKDIVTWNVMITGFVRNGHGREAVRLYQKMDLPPDSLTMGIMPDELTFLSVL 497

Query: 463 SACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPN 522
            ACSH G I++G   F S    YGI    KH+ C++DILGR G+  E +  +       N
Sbjct: 498 FACSHGGSIQQGLDLFLSAGVDYGIATNTKHYVCVVDILGRVGRLEEAQEVLNRMPFQAN 557

Query: 523 ALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGR 572
            + W  LLGAC  H + E   + A+ ++EL+P+  + Y   S + +  GR
Sbjct: 558 DVAWMTLLGACRIHRDFEQGRRAADYVIELDPQNAAPYALLSTMFSAAGR 607



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 126/467 (26%), Positives = 210/467 (44%), Gaps = 47/467 (10%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E AK VF ++ E N VSWNA+L  YA++G  ++ + L+  M     K    +  +VL G
Sbjct: 108 LEEAKAVFATLVERNRVSWNAMLAAYAQNGHCEEAVRLYRLMCFEGIKPDATTFVSVLDG 167

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           +   G  + G+ +H   +  G   +  L+ +LV MY   G  D+A  VF  I +  VV+W
Sbjct: 168 WKGEG--EHGRRIHDQVVESGFGSNTTLANALVSMYGSGGRVDDARYVFDGIAEKTVVSW 225

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A++T   Q G   EA  +F  M    V P+     +++ A  +  +   G  +H  I  
Sbjct: 226 NAMLTAYAQNGRYGEAVDLFWKM---DVAPDTVSFVNVLGACMDIEE---GRLVHEHIKA 279

Query: 181 YGFESDTLVGNALVSM-------------------------------YMENGRVSYGSRV 209
            GF    LV  +LV+M                               Y +NG +     V
Sbjct: 280 SGFPVGVLVSTSLVNMYGRFLRLEEAKQCFEQARERDRVCWNSMVGAYAQNGCMEEAKAV 339

Query: 210 FEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDV 269
           F+ +A +D V W AL + +   E     L ++  M L+G + N  TF  I+  C+    +
Sbjct: 340 FDRVASKDIVLWTALLTAYSRNEDAKGALLVYRNMDLEGMEKNRFTFSSIVSVCADAEAL 399

Query: 270 GFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSY 329
             G+++H HT+    D + +VGT+LVD Y K   ++ A   FD +  KD+  +  +IT +
Sbjct: 400 AEGQKVHLHTVSVGYDKDVIVGTTLVDFYSKCHDVDTARSVFDGIEGKDIVTWNVMITGF 459

Query: 330 AQAGEAEMALKCFRKMRLE------GIKSNEFTLASCLNGCSPVATLANG-RLLHSIAVK 382
            + G    A++ ++KM L       GI  +E T  S L  CS   ++  G  L  S  V 
Sbjct: 460 VRNGHGREAVRLYQKMDLPPDSLTMGIMPDELTFLSVLFACSHGGSIQQGLDLFLSAGVD 519

Query: 383 TGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALR-DTASWNMMIG 428
            G   +      +V +  + G +++A+ V      + +  +W  ++G
Sbjct: 520 YGIATNTKHYVCVVDILGRVGRLEEAQEVLNRMPFQANDVAWMTLLG 566



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/406 (23%), Positives = 164/406 (40%), Gaps = 85/406 (20%)

Query: 157 SLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAI--- 213
           S++R    T D    +     I + GF  D  +GN LV  Y + G V     VF+ I   
Sbjct: 17  SILRDCASTRDLTAAKQAQWEIARDGFGGDRYLGNLLVQAYGKCGSVRDAREVFDRIQRR 76

Query: 214 ------------------------------------------AHQDSVSWNALFSRFQDY 231
                                                       ++ VSWNA+ + +   
Sbjct: 77  NIFSWTIMLGAYADNGHGREALGLMYGKCGHLEEAKAVFATLVERNRVSWNAMLAAYAQN 136

Query: 232 ESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG 291
              ++ +R++  M  +G KP+  TF+ +L       +   G+++H   ++     N  + 
Sbjct: 137 GHCEEAVRLYRLMCFEGIKPDATTFVSVLDGWKGEGE--HGRRIHDQVVESGFGSNTTLA 194

Query: 292 TSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK 351
            +LV MY   G ++DA   FD +A K + ++ A++T+YAQ G    A+  F KM    + 
Sbjct: 195 NALVSMYGSGGRVDDARYVFDGIAEKTVVSWNAMLTAYAQNGRYGEAVDLFWKM---DVA 251

Query: 352 SNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAV 411
            +  +  + L  C  +     GRL+H     +G  + + VST+LV MY +   +++A+  
Sbjct: 252 PDTVSFVNVLGACMDI---EEGRLVHEHIKASGFPVGVLVSTSLVNMYGRFLRLEEAKQC 308

Query: 412 FKGSALRDTASWNMMIGGYVKHGLGEK-------------------------------AL 440
           F+ +  RD   WN M+G Y ++G  E+                               AL
Sbjct: 309 FEQARERDRVCWNSMVGAYAQNGCMEEAKAVFDRVASKDIVLWTALLTAYSRNEDAKGAL 368

Query: 441 EAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIY 485
             +R M  EG   +  TF  ++S C+    + EG+K H  ++   Y
Sbjct: 369 LVYRNMDLEGMEKNRFTFSSIVSVCADAEALAEGQKVHLHTVSVGY 414



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 144/327 (44%), Gaps = 55/327 (16%)

Query: 259 ILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKD 318
           IL+ C+S  D+   KQ      +    G+  +G  LV  Y K G + DA   FD +  ++
Sbjct: 18  ILRDCASTRDLTAAKQAQWEIARDGFGGDRYLGNLLVQAYGKCGSVRDAREVFDRIQRRN 77

Query: 319 LFAYT---------------------------------------------AIITSYAQAG 333
           +F++T                                             A++ +YAQ G
Sbjct: 78  IFSWTIMLGAYADNGHGREALGLMYGKCGHLEEAKAVFATLVERNRVSWNAMLAAYAQNG 137

Query: 334 EAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVST 393
             E A++ +R M  EGIK +  T  S L+G        +GR +H   V++G   +  ++ 
Sbjct: 138 HCEEAVRLYRLMCFEGIKPDATTFVSVLDGWKGEGE--HGRRIHDQVVESGFGSNTTLAN 195

Query: 394 ALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVP 453
           ALV+MY   G +DDA  VF G A +   SWN M+  Y ++G   +A++ F  M      P
Sbjct: 196 ALVSMYGSGGRVDDARYVFDGIAEKTVVSWNAMLTAYAQNGRYGEAVDLFWKM---DVAP 252

Query: 454 DEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENF 513
           D ++FV VL AC     IEEG+     IK   G    +     ++++ GR  +  E +  
Sbjct: 253 DTVSFVNVLGACMD---IEEGRLVHEHIKA-SGFPVGVLVSTSLVNMYGRFLRLEEAKQC 308

Query: 514 ITETKLTPNALVWENLLGACSWHGNIE 540
             + +   + + W +++GA + +G +E
Sbjct: 309 FEQAR-ERDRVCWNSMVGAYAQNGCME 334



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 118/249 (47%), Gaps = 12/249 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM--KDMEKKFSKFSLSTVL 58
           ME AK VF  +   ++V W ALL  Y+ + D +  + ++ +M  + MEK  ++F+ S+++
Sbjct: 333 MEEAKAVFDRVASKDIVLWTALLTAYSRNEDAKGALLVYRNMDLEGMEK--NRFTFSSIV 390

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
              A++  +  GQ VH   + +G   D  +  +LVD YSKC   D A  VF  I+  D+V
Sbjct: 391 SVCADAEALAEGQKVHLHTVSVGYDKDVIVGTTLVDFYSKCHDVDTARSVFDGIEGKDIV 450

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMR------ESSVKPNQFVLTSLVRATTETGDQRCGE 172
            W  +IT   + G  +EA +++  M          + P++    S++ A +  G  + G 
Sbjct: 451 TWNVMITGFVRNGHGREAVRLYQKMDLPPDSLTMGIMPDELTFLSVLFACSHGGSIQQGL 510

Query: 173 SIH-AVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQ-DSVSWNALFSRFQD 230
            +  +    YG  ++T     +V +    GR+     V   +  Q + V+W  L    + 
Sbjct: 511 DLFLSAGVDYGIATNTKHYVCVVDILGRVGRLEEAQEVLNRMPFQANDVAWMTLLGACRI 570

Query: 231 YESPDQGLR 239
           +   +QG R
Sbjct: 571 HRDFEQGRR 579



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 87/251 (34%), Gaps = 77/251 (30%)

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           AS L  C+    L   +       + G   D ++   LV  Y KCGS+ DA  VF     
Sbjct: 16  ASILRDCASTRDLTAAKQAQWEIARDGFGGDRYLGNLLVQAYGKCGSVRDAREVFDRIQR 75

Query: 418 RDTASWNMMIGGYVKHGLG----------------------------------------- 436
           R+  SW +M+G Y  +G G                                         
Sbjct: 76  RNIFSWTIMLGAYADNGHGREALGLMYGKCGHLEEAKAVFATLVERNRVSWNAMLAAYAQ 135

Query: 437 ----EKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTI 491
               E+A+  +R+M  EG  PD  TFV VL      G  E G++ H   ++  +G   T+
Sbjct: 136 NGHCEEAVRLYRLMCFEGIKPDATTFVSVLDGWKGEG--EHGRRIHDQVVESGFGSNTTL 193

Query: 492 KH-----------------------------FACMIDILGRAGKFTEIENFITETKLTPN 522
            +                             +  M+    + G++ E  +   +  + P+
Sbjct: 194 ANALVSMYGSGGRVDDARYVFDGIAEKTVVSWNAMLTAYAQNGRYGEAVDLFWKMDVAPD 253

Query: 523 ALVWENLLGAC 533
            + + N+LGAC
Sbjct: 254 TVSFVNVLGAC 264


>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 608

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 151/429 (35%), Positives = 247/429 (57%), Gaps = 3/429 (0%)

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H+++ K    SD    ++L++MY   GRV++  +VF+ I  +D VSWN++ + +      
Sbjct: 139 HSLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGCA 198

Query: 235 DQGLRIFYQMLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTS 293
            + + +F +M  + GF+P+  + + +L AC  L D+  G+ +    ++  +  N  +G++
Sbjct: 199 REAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLNSYIGSA 258

Query: 294 LVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSN 353
           L+ MY K G L  A   FD +A +D+  + A+I+ YAQ G A+ A+  F  M+ + +  N
Sbjct: 259 LISMYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQNGMADEAISLFHAMKEDCVTEN 318

Query: 354 EFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFK 413
           + TL + L+ C+ +  L  G+ +   A + G   D+FV+TAL+ MYAKCGS+  A+ VFK
Sbjct: 319 KITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQRVFK 378

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDE--GYVPDEITFVVVLSACSHMGLI 471
               ++ ASWN MI     HG  ++AL  F+ M DE  G  P++ITFV +LSAC H GL+
Sbjct: 379 EMPQKNEASWNAMISALASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLSACVHAGLV 438

Query: 472 EEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLG 531
            EG + F  +  ++G+ P I+H++CM+D+L RAG   E  + I +    P+ +    LLG
Sbjct: 439 NEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIEKMPEKPDKVTLGALLG 498

Query: 532 ACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
           AC    N+++ E+    +LE++P    NY+  S I A    W D + +R L+  +GI K 
Sbjct: 499 ACRSKKNVDIGERVIRMILEVDPSNSGNYIISSKIYANLNMWEDSARMRLLMRQKGITKT 558

Query: 592 PSCSWIEVD 600
           P CSWIEV+
Sbjct: 559 PGCSWIEVE 567



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 144/276 (52%), Gaps = 3/276 (1%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLKGF 61
            A++VF  +P  ++VSWN+++ GYA++G  ++ + +F  M   +  +  + SL +VL   
Sbjct: 169 FARKVFDEIPRRDLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGAC 228

Query: 62  ANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWG 121
              G ++ G+ V    +  G  L+ ++  +L+ MY+KCG   +A ++F  +   DV+ W 
Sbjct: 229 GELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGDLGSARRIFDGMAARDVITWN 288

Query: 122 AIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY 181
           A+I+   Q G   EA  +F+ M+E  V  N+  LT+++ A    G    G+ I     + 
Sbjct: 289 AVISGYAQNGMADEAISLFHAMKEDCVTENKITLTAVLSACATIGALDLGKQIDEYASQR 348

Query: 182 GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           GF+ D  V  AL+ MY + G ++   RVF+ +  ++  SWNA+ S    +    + L +F
Sbjct: 349 GFQHDIFVATALIDMYAKCGSLASAQRVFKEMPQKNEASWNAMISALASHGKAKEALSLF 408

Query: 242 YQMLLK--GFKPNMCTFIVILKACSSLSDVGFGKQL 275
             M  +  G +PN  TF+ +L AC     V  G +L
Sbjct: 409 QCMSDEGGGARPNDITFVGLLSACVHAGLVNEGYRL 444



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 72/140 (51%), Gaps = 1/140 (0%)

Query: 337 MALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALV 396
           +AL  F +M    +  N FT       C+ +A L+  R  HS+  K     D   + +L+
Sbjct: 99  LALTLFHRMMSLSLSPNNFTFPFFFLSCANLAVLSPARAAHSLVFKLALHSDPHTTHSLI 158

Query: 397 AMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAF-RMMLDEGYVPDE 455
            MY++CG +  A  VF     RD  SWN MI GY K G   +A+E F  M   +G+ PDE
Sbjct: 159 TMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDE 218

Query: 456 ITFVVVLSACSHMGLIEEGK 475
           ++ V VL AC  +G +E G+
Sbjct: 219 MSLVSVLGACGELGDLELGR 238


>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 702

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 154/464 (33%), Positives = 253/464 (54%), Gaps = 3/464 (0%)

Query: 139 IFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYM 198
           +++ M+  ++ PN F    +  A     + R     H  + K G ++D    N++V+MY 
Sbjct: 104 LYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYF 163

Query: 199 ENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLK-GFKPNMCTFI 257
             G      +VF+ I  +D VSWN+L S +       + + +F ++  + GF+P+  + +
Sbjct: 164 RCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLV 223

Query: 258 VILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANK 317
            +L AC  L D+  G+ +    ++  +  N  +G++L+ MY K G L  +   FD + ++
Sbjct: 224 SVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSR 283

Query: 318 DLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLH 377
           D   + A I++YAQ G A+ A+  F  M+  G+  N+ TL + L+ C+ +  L  G+ + 
Sbjct: 284 DFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMD 343

Query: 378 SIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGE 437
             A   G   D+FV+TAL+ MYAKCGS++ A+ VF     ++ ASWN MI     HG  +
Sbjct: 344 EYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAK 403

Query: 438 KALEAFRMMLDEG--YVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFA 495
           +AL  F  M DEG    P++ITFV +LSAC H GL++EG + F  +  ++G+ P I+H++
Sbjct: 404 EALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYS 463

Query: 496 CMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPK 555
           CM+D+L RAG   E  + I +    P+ +    L  AC    N+++ E+  + LLEL+P 
Sbjct: 464 CMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDPS 523

Query: 556 MESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
              NY+  S I      W+D + +RAL+   G+ K P CSWIEV
Sbjct: 524 NSGNYIISSKIYENLNMWDDAARMRALMRENGVTKTPGCSWIEV 567



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 113/438 (25%), Positives = 205/438 (46%), Gaps = 27/438 (6%)

Query: 138 KIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMY 197
           KIF  +  ++     F+L SL++    T   +  + IH     +         N L+S  
Sbjct: 7   KIFKTINTNTNHSPIFLLLSLLKQCPST---KTLQQIHTQFTIHSIHKP----NHLLSQS 59

Query: 198 MENGRVSYGSRVFEAIA-HQDSVSWNALF----SRFQDYESPDQGLRIFYQMLLKGFKPN 252
           +     +Y + +F  I  H +  ++N +     + + DY      L +++QM      PN
Sbjct: 60  ISLKDFTYSTLIFSHITPHPNDYAFNIMLRATTTTWHDYP---LTLHLYHQMKTLNISPN 116

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
             TF  +  AC++L ++   +  H    K  LD +H    S+V MY + G    A   FD
Sbjct: 117 NFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFD 176

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE-GIKSNEFTLASCLNGCSPVATLA 371
            +  KDL ++ ++++ YA+ G A  A++ F ++R E G + +E +L S L  C  +  L 
Sbjct: 177 EITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLE 236

Query: 372 NGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYV 431
            GR +    V+ G  ++ ++ +AL++MY+KCG +  +  +F G   RD  +WN  I  Y 
Sbjct: 237 LGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYA 296

Query: 432 KHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTI 491
           ++G+ ++A+  F  M + G  P+++T   VLSAC+ +G ++ GK+         G+   I
Sbjct: 297 QNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQ-MDEYATHRGLQHDI 355

Query: 492 KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551
                +ID+  + G     +    +     +A  W  ++ A + HG        A++ L 
Sbjct: 356 FVATALIDMYAKCGSLESAQRVFNDMPRKNDA-SWNAMISALASHGK-------AKEALS 407

Query: 552 LEPKM--ESNYVFPSDIS 567
           L  +M  E     P+DI+
Sbjct: 408 LFERMSDEGGSARPNDIT 425



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 145/275 (52%), Gaps = 7/275 (2%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFS--KFSLSTVLKG 60
           +A++VF  + E ++VSWN+LL+GYA+ G  ++ + +F  +++ E  F   + SL +VL  
Sbjct: 170 VARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLRE-ESGFEPDEMSLVSVLGA 228

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
               G ++ G+ V    +  G  ++ ++  +L+ MYSKCG   ++ ++F  +   D + W
Sbjct: 229 CGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITW 288

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A I+   Q G   EA  +F+ M+E+ V PN+  LT+++ A    G    G+ +      
Sbjct: 289 NAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATH 348

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G + D  V  AL+ MY + G +    RVF  +  ++  SWNA+ S    +    + L +
Sbjct: 349 RGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSL 408

Query: 241 FYQMLLKG--FKPNMCTFIVILKAC--SSLSDVGF 271
           F +M  +G   +PN  TF+ +L AC  + L D G+
Sbjct: 409 FERMSDEGGSARPNDITFVSLLSACVHAGLVDEGY 443



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 6/150 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDM--EKKFSKFSLSTVL 58
           +E A+RVF  MP  N  SWNA+++  A  G  ++ + LF  M D     + +  +  ++L
Sbjct: 371 LESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLL 430

Query: 59  KGFANSGYIKAGQVVHAMAIRLGCALDKF--LSCSLVDMYSKCGLADNALKVFYRIKD-P 115
               ++G +  G  +  M   L   + K    SC +VD+ S+ G    A  V  ++ + P
Sbjct: 431 SACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSC-MVDLLSRAGHLYEAWDVIEKMPEKP 489

Query: 116 DVVAWGAIITCLDQQGCCQEAAKIFNLMRE 145
           D V  GA+ +   ++       ++  ++ E
Sbjct: 490 DNVTLGALHSACQRKKNVDIGERVIQMLLE 519


>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
          Length = 696

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 177/534 (33%), Positives = 281/534 (52%), Gaps = 4/534 (0%)

Query: 68  KAGQVVHAMAIRL-GCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           + G+  HA A+RL   AL  FL   LV++YSK  L   A         P VV++ A I+ 
Sbjct: 34  RLGRAAHARALRLLSPALPPFLCAHLVNLYSKLDLPGAAAASLAADPSPTVVSYTAFISG 93

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRC-GESIHAVICKYGF-E 184
             Q     +A   F  M    ++PN F   S  +A      +   G  +HA+  ++G+  
Sbjct: 94  AAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAASAPPRSAAGTQLHALALRFGYLP 153

Query: 185 SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
            D  V  A + MY + G ++   R+F+ + +++ V+WNA+ +       P + +  ++ +
Sbjct: 154 DDAFVSCAALDMYFKTGCLALARRLFDEMPNRNVVAWNAVMTNAVLDGRPLETVEAYFGL 213

Query: 245 LLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCL 304
              G  PN+ +      AC+ ++++  G+Q +    K     +  V  S+VD Y K  C+
Sbjct: 214 RGAGGMPNVVSVCAFFNACAGMTNLSLGEQFYGFVAKCGFGKDVSVSNSVVDFYGKCRCV 273

Query: 305 EDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGC 364
             A   FD +  ++  ++ +++ +YAQ G  E A   +   R  G +  +F ++S L  C
Sbjct: 274 GKARAVFDGMGVRNNVSWCSMVVAYAQNGAEEEAFFVYLGARRAGEEPTDFMVSSVLTTC 333

Query: 365 SPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWN 424
           + +  L  GR LH++AV++    ++FV++ALV MY KCG I+DAE VF     R+  +WN
Sbjct: 334 AGLLGLDLGRALHAVAVRSCIDSNIFVASALVDMYGKCGGIEDAEQVFFEMPQRNLVTWN 393

Query: 425 MMIGGYVKHGLGEKALEAF-RMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
            MIGGY   G    AL  F +M++ +   P+ IT V VL+ACS  GL +EG + F ++K 
Sbjct: 394 AMIGGYAHIGDAHNALSVFDKMIMGQETAPNYITLVNVLTACSRGGLTKEGYELFQTMKW 453

Query: 484 IYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDE 543
            +GI P I+H+AC++D+L RAG        I    + P+  VW  LLG C  HG  EL  
Sbjct: 454 RFGIEPRIEHYACVVDLLCRAGMEERAYKIIQGMPMRPSISVWGALLGGCKMHGKTELGR 513

Query: 544 KDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWI 597
             AEKL EL+P+   N+V  S++ A+ GRW + + VR  + + GIKK+P  SWI
Sbjct: 514 IAAEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKKDPGRSWI 567



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 123/265 (46%), Gaps = 1/265 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + LA+R+F  MP  NVV+WNA++      G   + +  +  ++      +  S+      
Sbjct: 172 LALARRLFDEMPNRNVVAWNAVMTNAVLDGRPLETVEAYFGLRGAGGMPNVVSVCAFFNA 231

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A    +  G+  +    + G   D  +S S+VD Y KC     A  VF  +   + V+W
Sbjct: 232 CAGMTNLSLGEQFYGFVAKCGFGKDVSVSNSVVDFYGKCRCVGKARAVFDGMGVRNNVSW 291

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            +++    Q G  +EA  ++   R +  +P  F+++S++           G ++HAV  +
Sbjct: 292 CSMVVAYAQNGAEEEAFFVYLGARRAGEEPTDFMVSSVLTTCAGLLGLDLGRALHAVAVR 351

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
              +S+  V +ALV MY + G +    +VF  +  ++ V+WNA+   +         L +
Sbjct: 352 SCIDSNIFVASALVDMYGKCGGIEDAEQVFFEMPQRNLVTWNAMIGGYAHIGDAHNALSV 411

Query: 241 FYQMLL-KGFKPNMCTFIVILKACS 264
           F +M++ +   PN  T + +L ACS
Sbjct: 412 FDKMIMGQETAPNYITLVNVLTACS 436


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 186/612 (30%), Positives = 303/612 (49%), Gaps = 62/612 (10%)

Query: 48  KFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALK 107
           +   F+L  VLK        + G   H +    G   + F+  +LV MYS+CG  + A  
Sbjct: 7   RLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASM 66

Query: 108 VFYRIKD---PDVVAWGAIITCLDQQGCCQEAAKIFNLM------RESSVKPNQFVLTSL 158
           +F  I      DV++W +I++   +      A  +F+ M      + ++ + +   + ++
Sbjct: 67  IFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNI 126

Query: 159 VRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDS 218
           + A          + +H    + G   D  VGNAL+  Y + G +    +VF  +  +D 
Sbjct: 127 LPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDV 186

Query: 219 VSWNAL-------------FSRFQDYESPD----------------------QGLRIFYQ 243
           VSWNA+             F  F++    +                      + L +F Q
Sbjct: 187 VSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQ 246

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL----------DGNHVVGTS 293
           M+  G  PN  T I +L AC+SL     G ++HA+++K+ L          D + +V  +
Sbjct: 247 MIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNA 306

Query: 294 LVDMYDKSGCLEDAGVAFD--SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLE--G 349
           L+DMY K    + A   FD   L  +++  +T +I  +AQ G++  ALK F +M  E  G
Sbjct: 307 LIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYG 366

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLD---MFVSTALVAMYAKCGSID 406
           +  N +T++  L  C+ +A +  G+ +H+  ++  H  D    FV+  L+ MY+KCG +D
Sbjct: 367 VAPNAYTISCILMACAHLAAIRIGKQIHAYVLRH-HQYDSSAYFVANCLINMYSKCGDVD 425

Query: 407 DAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACS 466
            A  VF   + +   SW  M+ GY  HG G +AL+ F  M   G+VPD+ITF+VVL ACS
Sbjct: 426 TARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACS 485

Query: 467 HMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVW 526
           H G++++G  +F S+   YG+TP  +H+A  ID+L R G+  +    + +  + P A+VW
Sbjct: 486 HCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVW 545

Query: 527 ENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQ 586
             LL AC  H N+EL E    KL+E+  + + +Y   S+I AT GRW D + +R L+   
Sbjct: 546 VALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKS 605

Query: 587 GIKKEPSCSWIE 598
           GIKK P CSW++
Sbjct: 606 GIKKRPGCSWVQ 617



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 125/484 (25%), Positives = 222/484 (45%), Gaps = 67/484 (13%)

Query: 143 MRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGR 202
           M  +  + + F L  +++A  E    RCG + H +IC  GFES+  + NALV+MY   G 
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 203 VSYGSRVFEAIAHQ---DSVSWNALFSRFQDYESPDQGLRIFYQM-LLKGFKP-----NM 253
           +   S +F+ I  +   D +SWN++ S      +    L +F +M L+   KP     ++
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 254 CTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDS 313
            + + IL AC SL  V   K++H + I++    +  VG +L+D Y K G +E+A   F+ 
Sbjct: 121 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNM 180

Query: 314 LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIK---------------------- 351
           +  KD+ ++ A++  Y+Q+G  + A + F+ MR E I                       
Sbjct: 181 MEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEA 240

Query: 352 -------------SNEFTLASCLNGCSPVATLANGRLLHSIAVKT----------GHLLD 388
                         N  T+ S L+ C+ +   + G  +H+ ++K           G   D
Sbjct: 241 LNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDED 300

Query: 389 MFVSTALVAMYAKCGSIDDAEAVFKGSAL--RDTASWNMMIGGYVKHGLGEKALEAFRMM 446
           + V  AL+ MY+KC S   A ++F    L  R+  +W +MIGG+ ++G    AL+ F  M
Sbjct: 301 LMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEM 360

Query: 447 LDEGY--VPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFA-CMIDILGR 503
           + E Y   P+  T   +L AC+H+  I  GK+  + + + +    +    A C+I++  +
Sbjct: 361 ISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSK 420

Query: 504 AGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFP 563
            G   +    + ++    +A+ W +++     HG          + L++  KM      P
Sbjct: 421 CGD-VDTARHVFDSMSQKSAISWTSMMTGYGMHGR-------GSEALDIFDKMRKAGFVP 472

Query: 564 SDIS 567
            DI+
Sbjct: 473 DDIT 476



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 131/510 (25%), Positives = 217/510 (42%), Gaps = 62/510 (12%)

Query: 1   MELAKRVFKSMPEL---NVVSWNALLNGYAESGDGQKVMHLFCSM------KDMEKKFSK 51
           +E A  +F  + +    +V+SWN++++ + +S +    + LF  M      K   ++   
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 52  FSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYR 111
            S+  +L    +   +   + VH  AIR G  LD F+  +L+D Y+KCGL +NA+KVF  
Sbjct: 121 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNM 180

Query: 112 IKDPDVVAWG-----------------------------------AIITCLDQQGCCQEA 136
           ++  DVV+W                                    A+I    Q+GC  EA
Sbjct: 181 MEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEA 240

Query: 137 AKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKY----------GFESD 186
             +F  M  S   PN   + S++ A    G    G  IHA   K           G + D
Sbjct: 241 LNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDED 300

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIA--HQDSVSWNALFSRFQDYESPDQGLRIFYQM 244
            +V NAL+ MY +         +F+ I    ++ V+W  +      Y   +  L++F +M
Sbjct: 301 LMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEM 360

Query: 245 LLK--GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL--DGNHVVGTSLVDMYDK 300
           + +  G  PN  T   IL AC+ L+ +  GKQ+HA+ ++H       + V   L++MY K
Sbjct: 361 ISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSK 420

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G ++ A   FDS++ K   ++T+++T Y   G    AL  F KMR  G   ++ T    
Sbjct: 421 CGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVV 480

Query: 361 LNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
           L  CS    +  G     S++   G           + + A+ G +D A    K   +  
Sbjct: 481 LYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEP 540

Query: 420 TA-SWNMMIGGYVKHGLGEKALEAFRMMLD 448
           TA  W  ++     H   E A  A   +++
Sbjct: 541 TAVVWVALLSACRVHSNVELAEHALNKLVE 570



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 70/165 (42%), Gaps = 3/165 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A+ VF SM + + +SW +++ GY   G G + + +F  M+         +   VL  
Sbjct: 424 VDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYA 483

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPDVV 118
            ++ G +  G     +M+   G           +D+ ++ G  D A K    +  +P  V
Sbjct: 484 CSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAV 543

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPN-QFVLTSLVRAT 162
            W A+++        + A    N + E + + +  + L S + AT
Sbjct: 544 VWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYAT 588


>gi|297827565|ref|XP_002881665.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327504|gb|EFH57924.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 836

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 186/597 (31%), Positives = 308/597 (51%), Gaps = 14/597 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ VF+ +   +  SW  ++  YA +G  ++V+ LF  M++ + + +K + ++ L+  A 
Sbjct: 253 AECVFEEVFSKDESSWGTMMAAYAHNGSFEEVLELFDVMRNYDVRMNKVAAASALQAAAY 312

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
            G ++ G  +H   ++ G   D  ++ SL++MYSKCG  + A ++F +IKD DVV+W A+
Sbjct: 313 VGNLEKGIAIHEYTVQQGMMSDISVATSLINMYSKCGELELAEQLFIKIKDRDVVSWSAM 372

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           I   +Q G   EA  +F  M  +  KPN   LTS+++        R G+SIH    K   
Sbjct: 373 IASFEQAGQHDEALSLFRDMMRTHFKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKADV 432

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           ES+     A++SMY + G  S   + FE +  +D++++NAL   +       +   ++  
Sbjct: 433 ESELETATAVISMYAKCGLFSPTLKAFERLPIKDAIAFNALAQGYTQIGDASKAFDVYKN 492

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGC 303
           M L G  P+  T + +L+ C+  SD   G  ++   IKH  D    V  +L+DM+ K   
Sbjct: 493 MKLHGVCPDSGTMVGMLQTCALCSDYARGSCVYGQIIKHGFDSECHVAHALIDMFTKCDA 552

Query: 304 LEDAGVAFDSLA-NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
           L  A   FD     K   ++  ++  Y   G+AE A+  FR+M++E  + N  T  + + 
Sbjct: 553 LAAAKSLFDKCGFEKSTVSWNIMMNGYLLHGQAEEAIATFRQMKVEKFQPNAVTFVNIVR 612

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
             + +A L+ G  +HS  ++ G      V  +LV MYAKCG I+ ++  F     ++  S
Sbjct: 613 AAAELAALSLGMSVHSSLIQFGFCSHTPVGNSLVDMYAKCGMIESSKKCFIEIRNKNMVS 672

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIK 482
           WN M+  Y  HGL   A+  F  M +    PD ++F+ VLSAC H GL EEGK+ F  ++
Sbjct: 673 WNTMLSAYAAHGLANCAVSLFLSMQENELKPDSVSFLSVLSACRHAGLAEEGKRIFKEME 732

Query: 483 KIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELD 542
           + + I   ++H+ACM+D+LG++G F E    +   ++  +  VW  LL +   H N+ L 
Sbjct: 733 ERHKIEAKVEHYACMVDLLGKSGLFDEAVEMVRRMRVKASVGVWGALLNSSRMHCNLWLS 792

Query: 543 EKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
                +L++LEP   S+Y     +    G  N+ S          IKK P+CSWI+V
Sbjct: 793 NAALCQLVKLEPLNPSHYGQDQRL----GEANNVS---------RIKKVPACSWIQV 836



 Score =  239 bits (609), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 147/538 (27%), Positives = 261/538 (48%), Gaps = 11/538 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKF---SKFSLSTVLKG 60
           A++VF  MP  ++V+WN +++G A++G   + + LF   +DM   F      SL  ++  
Sbjct: 154 ARQVFDKMPVKDIVTWNTMVSGLAQNGCSSEALRLF---RDMHSSFVDIDHVSLYNLIPA 210

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            +        + +H + I+ G       S  L+DMY KC     A  VF  +   D  +W
Sbjct: 211 VSKLEKNDVCRCLHGLVIKKG--FTSAFSSGLIDMYCKCADLYAAECVFEEVFSKDESSW 268

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
           G ++      G  +E  ++F++MR   V+ N+    S ++A    G+   G +IH    +
Sbjct: 269 GTMMAAYAHNGSFEEVLELFDVMRNYDVRMNKVAAASALQAAAYVGNLEKGIAIHEYTVQ 328

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            G  SD  V  +L++MY + G +    ++F  I  +D VSW+A+ + F+     D+ L +
Sbjct: 329 QGMMSDISVATSLINMYSKCGELELAEQLFIKIKDRDVVSWSAMIASFEQAGQHDEALSL 388

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  M+   FKPN  T   +L+ C+ ++    GK +H + IK  ++      T+++ MY K
Sbjct: 389 FRDMMRTHFKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKADVESELETATAVISMYAK 448

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G       AF+ L  KD  A+ A+   Y Q G+A  A   ++ M+L G+  +  T+   
Sbjct: 449 CGLFSPTLKAFERLPIKDAIAFNALAQGYTQIGDASKAFDVYKNMKLHGVCPDSGTMVGM 508

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL-RD 419
           L  C+  +  A G  ++   +K G   +  V+ AL+ M+ KC ++  A+++F      + 
Sbjct: 509 LQTCALCSDYARGSCVYGQIIKHGFDSECHVAHALIDMFTKCDALAAAKSLFDKCGFEKS 568

Query: 420 TASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFS 479
           T SWN+M+ GY+ HG  E+A+  FR M  E + P+ +TFV ++ A + +  +  G    S
Sbjct: 569 TVSWNIMMNGYLLHGQAEEAIATFRQMKVEKFQPNAVTFVNIVRAAAELAALSLGMSVHS 628

Query: 480 SIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           S+ + +G          ++D+  + G     +    E +   N + W  +L A + HG
Sbjct: 629 SLIQ-FGFCSHTPVGNSLVDMYAKCGMIESSKKCFIEIR-NKNMVSWNTMLSAYAAHG 684



 Score =  215 bits (547), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 142/540 (26%), Positives = 258/540 (47%), Gaps = 4/540 (0%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEK-KFSKFSLSTVLKG 60
           +L++++  S+P   VV WN+++ GY  +G  ++ + +F  M + +     K++ +  LK 
Sbjct: 50  DLSRKIVDSVPYPGVVLWNSMIRGYTRAGLHKEALEVFGYMSEAKGIDPDKYTFTFALKA 109

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A S   + G  +H +   +G   D ++  +LV+MY K G   +A +VF ++   D+V W
Sbjct: 110 CAGSMDFEEGLRIHDLIAEMGFESDVYIGTALVEMYCKAGDLVSARQVFDKMPVKDIVTW 169

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +++ L Q GC  EA ++F  M  S V  +   L +L+ A ++         +H ++ K
Sbjct: 170 NTMVSGLAQNGCSSEALRLFRDMHSSFVDIDHVSLYNLIPAVSKLEKNDVCRCLHGLVIK 229

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRI 240
            GF S     + L+ MY +   +     VFE +  +D  SW  + + +    S ++ L +
Sbjct: 230 KGFTS--AFSSGLIDMYCKCADLYAAECVFEEVFSKDESSWGTMMAAYAHNGSFEEVLEL 287

Query: 241 FYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDK 300
           F  M     + N       L+A + + ++  G  +H +T++  +  +  V TSL++MY K
Sbjct: 288 FDVMRNYDVRMNKVAAASALQAAAYVGNLEKGIAIHEYTVQQGMMSDISVATSLINMYSK 347

Query: 301 SGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASC 360
            G LE A   F  + ++D+ +++A+I S+ QAG+ + AL  FR M     K N  TL S 
Sbjct: 348 CGELELAEQLFIKIKDRDVVSWSAMIASFEQAGQHDEALSLFRDMMRTHFKPNAVTLTSV 407

Query: 361 LNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDT 420
           L GC+ VA    G+ +H  A+K     ++  +TA+++MYAKCG        F+   ++D 
Sbjct: 408 LQGCAGVAASRLGKSIHCYAIKADVESELETATAVISMYAKCGLFSPTLKAFERLPIKDA 467

Query: 421 ASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSS 480
            ++N +  GY + G   KA + ++ M   G  PD  T V +L  C+       G   +  
Sbjct: 468 IAFNALAQGYTQIGDASKAFDVYKNMKLHGVCPDSGTMVGMLQTCALCSDYARGSCVYGQ 527

Query: 481 IKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIE 540
           I K +G          +ID+  +       ++   +     + + W  ++     HG  E
Sbjct: 528 IIK-HGFDSECHVAHALIDMFTKCDALAAAKSLFDKCGFEKSTVSWNIMMNGYLLHGQAE 586



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 112/442 (25%), Positives = 214/442 (48%), Gaps = 15/442 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +ELA+++F  + + +VVSW+A++  + ++G   + + LF  M     K +  +L++VL+G
Sbjct: 351 LELAEQLFIKIKDRDVVSWSAMIASFEQAGQHDEALSLFRDMMRTHFKPNAVTLTSVLQG 410

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A     + G+ +H  AI+     +   + +++ MY+KCGL    LK F R+   D +A+
Sbjct: 411 CAGVAASRLGKSIHCYAIKADVESELETATAVISMYAKCGLFSPTLKAFERLPIKDAIAF 470

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
            A+     Q G   +A  ++  M+   V P+   +  +++      D   G  ++  I K
Sbjct: 471 NALAQGYTQIGDASKAFDVYKNMKLHGVCPDSGTMVGMLQTCALCSDYARGSCVYGQIIK 530

Query: 181 YGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDS-VSWNALFSRFQDYESPDQGLR 239
           +GF+S+  V +AL+ M+ +   ++    +F+    + S VSWN + + +  +   ++ + 
Sbjct: 531 HGFDSECHVAHALIDMFTKCDALAAAKSLFDKCGFEKSTVSWNIMMNGYLLHGQAEEAIA 590

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
            F QM ++ F+PN  TF+ I++A + L+ +  G  +H+  I+     +  VG SLVDMY 
Sbjct: 591 TFRQMKVEKFQPNAVTFVNIVRAAAELAALSLGMSVHSSLIQFGFCSHTPVGNSLVDMYA 650

Query: 300 KSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLAS 359
           K G +E +   F  + NK++ ++  ++++YA  G A  A+  F  M+   +K +  +  S
Sbjct: 651 KCGMIESSKKCFIEIRNKNMVSWNTMLSAYAAHGLANCAVSLFLSMQENELKPDSVSFLS 710

Query: 360 CLNGCSPVATLANGRLL-------HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDA-EAV 411
            L+ C        G+ +       H I  K  H         +V +  K G  D+A E V
Sbjct: 711 VLSACRHAGLAEEGKRIFKEMEERHKIEAKVEHY------ACMVDLLGKSGLFDEAVEMV 764

Query: 412 FKGSALRDTASWNMMIGGYVKH 433
            +         W  ++     H
Sbjct: 765 RRMRVKASVGVWGALLNSSRMH 786



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 169/371 (45%), Gaps = 12/371 (3%)

Query: 150 PNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRV 209
           PN    T+L+R   E  + R    IH  +   G +      N L++ Y    R     ++
Sbjct: 2   PN--TCTTLLRMLRECKNFRLLLQIHGSLIVAGLKPH----NQLINAYSLFQRPDLSRKI 55

Query: 210 FEAIAHQDSVSWNALFSRFQDYESPDQGLRIF-YQMLLKGFKPNMCTFIVILKACSSLSD 268
            +++ +   V WN++   +       + L +F Y    KG  P+  TF   LKAC+   D
Sbjct: 56  VDSVPYPGVVLWNSMIRGYTRAGLHKEALEVFGYMSEAKGIDPDKYTFTFALKACAGSMD 115

Query: 269 VGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITS 328
              G ++H    +   + +  +GT+LV+MY K+G L  A   FD +  KD+  +  +++ 
Sbjct: 116 FEEGLRIHDLIAEMGFESDVYIGTALVEMYCKAGDLVSARQVFDKMPVKDIVTWNTMVSG 175

Query: 329 YAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLD 388
            AQ G +  AL+ FR M    +  +  +L + +   S +      R LH + +K G    
Sbjct: 176 LAQNGCSSEALRLFRDMHSSFVDIDHVSLYNLIPAVSKLEKNDVCRCLHGLVIKKG--FT 233

Query: 389 MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
              S+ L+ MY KC  +  AE VF+    +D +SW  M+  Y  +G  E+ LE F +M +
Sbjct: 234 SAFSSGLIDMYCKCADLYAAECVFEEVFSKDESSWGTMMAAYAHNGSFEEVLELFDVMRN 293

Query: 449 EGYVPDEITFVVVLSACSHMGLIEEG-KKHFSSIKKIYGITPTIKHFACMIDILGRAGKF 507
                +++     L A +++G +E+G   H  ++++  G+   I     +I++  + G+ 
Sbjct: 294 YDVRMNKVAAASALQAAAYVGNLEKGIAIHEYTVQQ--GMMSDISVATSLINMYSKCGEL 351

Query: 508 TEIENFITETK 518
              E    + K
Sbjct: 352 ELAEQLFIKIK 362


>gi|297810955|ref|XP_002873361.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319198|gb|EFH49620.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 849

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 180/635 (28%), Positives = 320/635 (50%), Gaps = 42/635 (6%)

Query: 8   FKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGY- 66
           F  + + +VVSWNA++ G++E+         FC M     + +  +++ VL   A+ G  
Sbjct: 181 FDDIADKDVVSWNAIIAGFSENKMMADAFRSFCLMLKEPTEPNYATIANVLPVCASMGKN 240

Query: 67  --IKAGQVVHAMAIRLGCALDKFLSC-SLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++G+ +H+  ++          C SLV  Y + G  + A  +F R+   D+V+W  +
Sbjct: 241 IAYRSGRQIHSYVVQRSWLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVV 300

Query: 124 ITCLDQQGCCQEAAKIF-NLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           I          +A ++F NL+++  V  +   + S++    +  D  CG+ IH+ I ++ 
Sbjct: 301 IAGYASNHEWLKALQLFHNLVQKGDVSLDSVTILSILPVCAQLTDLTCGKEIHSYILRHS 360

Query: 183 FE-SDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIF 241
           +   DT VGNAL+S Y   G  S     F  ++ +D +SWNA+   F D     Q L + 
Sbjct: 361 YLLEDTSVGNALISFYARFGDTSAAYWAFSLMSMKDIISWNAILDAFADSPKQFQFLNLL 420

Query: 242 YQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNH---VVGTSLVDMY 298
           + +  +    +  T + +LK C+++  +G  K++H +++K  L  N     +G +L+D Y
Sbjct: 421 HHLFNEAITLDSVTILSLLKFCTNVQGIGKVKEVHGYSVKAGLLHNEEEPKLGNALLDAY 480

Query: 299 DKSGCLE--------------------------------DAGVAFDSLANKDLFAYTAII 326
            K G +E                                DA + F  ++  DL  ++ ++
Sbjct: 481 AKCGNVEYAHKIFQGLSERRTLVTYNSLLSGYVNSGSHDDAQMLFSEMSTTDLTTWSLMV 540

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHL 386
             YA++     A+  FR+++  G++ N  T+ + L  C+ +A+L   R  H   ++ G L
Sbjct: 541 RIYAESCFPNEAIGVFREIQARGMRPNTVTIMNLLPVCAQLASLHLVRQCHGYIIR-GRL 599

Query: 387 LDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM 446
            D+ +   L+ +YAKCGS+  A +VF+  A RD   +  M+ GY  HG G++AL  F  M
Sbjct: 600 GDIRLKGTLLDVYAKCGSLKHAYSVFQSDARRDLVMFTAMVAGYAVHGRGKEALMIFSHM 659

Query: 447 LDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGK 506
           +D    PD +    +L+AC H GLI++G + + SI+ ++G+ PT++ +AC +D+L R G+
Sbjct: 660 IDSNIKPDHVFITTLLTACCHAGLIQDGLQIYDSIRAVHGMKPTMEQYACAVDLLARGGR 719

Query: 507 FTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDI 566
             +  +FIT+  + PNA +W  LL AC+ +  ++L    A  LL+ E     N+V  S++
Sbjct: 720 LDDAYSFITQMPVEPNANIWGTLLRACTTYNRMDLGHSVANHLLQAESDDTGNHVLISNM 779

Query: 567 SATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVDG 601
            A   +W     +R L+  + +KK   CSW+EVDG
Sbjct: 780 YAADAKWEGVMELRNLMKKKEMKKPAGCSWLEVDG 814



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 130/435 (29%), Positives = 220/435 (50%), Gaps = 10/435 (2%)

Query: 57  VLKGFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD 116
           V+K  A+   + +G+ +H    +LG      +S S+++MY+KC   D+  K+F ++   D
Sbjct: 27  VVKACASVSELTSGRALHGCVFKLGHIACTEVSKSVLNMYAKCRRMDDCQKMFRQMDSVD 86

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFNLMR-ESSVKPNQFVLTSLVRATTETGDQRCGESIH 175
            V W  ++T L    C +E  + F  M      KP+      L+      GD   G+S+H
Sbjct: 87  PVVWNIVLTGL-SVSCGRETMRFFKAMHFADEPKPSSVTFAILLPVCVRLGDSYNGKSMH 145

Query: 176 AVICKYGFESDTLVGNALVSMYMENGRVSYGS-RVFEAIAHQDSVSWNALFSRFQDYESP 234
           + I K G E DTLVGNALVSMY + G +   +   F+ IA +D VSWNA+ + F + +  
Sbjct: 146 SYIIKTGLEKDTLVGNALVSMYAKFGYIIPDAFTAFDDIADKDVVSWNAIIAGFSENKMM 205

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSL-SDVGF--GKQLHAHTIKHSLDGNHV-V 290
               R F  ML +  +PN  T   +L  C+S+  ++ +  G+Q+H++ ++ S    HV V
Sbjct: 206 ADAFRSFCLMLKEPTEPNYATIANVLPVCASMGKNIAYRSGRQIHSYVVQRSWLQTHVFV 265

Query: 291 GTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG- 349
             SLV  Y + G +E+A   F  + +KDL ++  +I  YA   E   AL+ F  +  +G 
Sbjct: 266 CNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIAGYASNHEWLKALQLFHNLVQKGD 325

Query: 350 IKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLL-DMFVSTALVAMYAKCGSIDDA 408
           +  +  T+ S L  C+ +  L  G+ +HS  ++  +LL D  V  AL++ YA+ G    A
Sbjct: 326 VSLDSVTILSILPVCAQLTDLTCGKEIHSYILRHSYLLEDTSVGNALISFYARFGDTSAA 385

Query: 409 EAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHM 468
              F   +++D  SWN ++  +       + L     + +E    D +T + +L  C+++
Sbjct: 386 YWAFSLMSMKDIISWNAILDAFADSPKQFQFLNLLHHLFNEAITLDSVTILSLLKFCTNV 445

Query: 469 GLIEEGKK-HFSSIK 482
             I + K+ H  S+K
Sbjct: 446 QGIGKVKEVHGYSVK 460



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 170/337 (50%), Gaps = 8/337 (2%)

Query: 154 VLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAI 213
           V   +V+A     +   G ++H  + K G  + T V  ++++MY +  R+    ++F  +
Sbjct: 23  VFLDVVKACASVSELTSGRALHGCVFKLGHIACTEVSKSVLNMYAKCRRMDDCQKMFRQM 82

Query: 214 AHQDSVSWNALFSRFQDYESPDQGLRIFYQM-LLKGFKPNMCTFIVILKACSSLSDVGFG 272
              D V WN + +         + +R F  M      KP+  TF ++L  C  L D   G
Sbjct: 83  DSVDPVVWNIVLTGLS-VSCGRETMRFFKAMHFADEPKPSSVTFAILLPVCVRLGDSYNG 141

Query: 273 KQLHAHTIKHSLDGNHVVGTSLVDMYDKSG-CLEDAGVAFDSLANKDLFAYTAIITSYAQ 331
           K +H++ IK  L+ + +VG +LV MY K G  + DA  AFD +A+KD+ ++ AII  +++
Sbjct: 142 KSMHSYIIKTGLEKDTLVGNALVSMYAKFGYIIPDAFTAFDDIADKDVVSWNAIIAGFSE 201

Query: 332 AGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVA---TLANGRLLHSIAVKTGHL-L 387
                 A + F  M  E  + N  T+A+ L  C+ +       +GR +HS  V+   L  
Sbjct: 202 NKMMADAFRSFCLMLKEPTEPNYATIANVLPVCASMGKNIAYRSGRQIHSYVVQRSWLQT 261

Query: 388 DMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMML 447
            +FV  +LV+ Y + G I++A ++F     +D  SWN++I GY  +    KAL+ F  ++
Sbjct: 262 HVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIAGYASNHEWLKALQLFHNLV 321

Query: 448 DEGYVP-DEITFVVVLSACSHMGLIEEGKKHFSSIKK 483
            +G V  D +T + +L  C+ +  +  GK+  S I +
Sbjct: 322 QKGDVSLDSVTILSILPVCAQLTDLTCGKEIHSYILR 358



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 118/492 (23%), Positives = 214/492 (43%), Gaps = 55/492 (11%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLK 59
           +E A  +F  M   ++VSWN ++ GYA + +  K + LF ++ +  +      ++ ++L 
Sbjct: 279 IEEAASLFTRMGSKDLVSWNVVIAGYASNHEWLKALQLFHNLVQKGDVSLDSVTILSILP 338

Query: 60  GFANSGYIKAGQVVHAMAIRLGCAL-DKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
             A    +  G+ +H+  +R    L D  +  +L+  Y++ G    A   F  +   D++
Sbjct: 339 VCAQLTDLTCGKEIHSYILRHSYLLEDTSVGNALISFYARFGDTSAAYWAFSLMSMKDII 398

Query: 119 AWGAIITCL-DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAV 177
           +W AI+    D     Q    + +L  E+    +  +L+ L   T   G  +  E +H  
Sbjct: 399 SWNAILDAFADSPKQFQFLNLLHHLFNEAITLDSVTILSLLKFCTNVQGIGKVKE-VHGY 457

Query: 178 ICKYGF---ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDS-VSWNALFSRFQDYES 233
             K G    E +  +GNAL+  Y + G V Y  ++F+ ++ + + V++N+L S + +  S
Sbjct: 458 SVKAGLLHNEEEPKLGNALLDAYAKCGNVEYAHKIFQGLSERRTLVTYNSLLSGYVNSGS 517

Query: 234 -------------------------------PDQGLRIFYQMLLKGFKPNMCTFIVILKA 262
                                          P++ + +F ++  +G +PN  T + +L  
Sbjct: 518 HDDAQMLFSEMSTTDLTTWSLMVRIYAESCFPNEAIGVFREIQARGMRPNTVTIMNLLPV 577

Query: 263 CSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAY 322
           C+ L+ +   +Q H + I+  L    + GT L+D+Y K G L+ A   F S A +DL  +
Sbjct: 578 CAQLASLHLVRQCHGYIIRGRLGDIRLKGT-LLDVYAKCGSLKHAYSVFQSDARRDLVMF 636

Query: 323 TAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG-RLLHSIAV 381
           TA++  YA  G  + AL  F  M    IK +   + + L  C     + +G ++  SI  
Sbjct: 637 TAMVAGYAVHGRGKEALMIFSHMIDSNIKPDHVFITTLLTACCHAGLIQDGLQIYDSIRA 696

Query: 382 KTGHLLDMFVSTALVAMYAKCGSIDDA-----------EAVFKGSALRDTASWNMMIGGY 430
             G    M      V + A+ G +DDA            A   G+ LR   ++N M  G 
Sbjct: 697 VHGMKPTMEQYACAVDLLARGGRLDDAYSFITQMPVEPNANIWGTLLRACTTYNRMDLG- 755

Query: 431 VKHGLGEKALEA 442
             H +    L+A
Sbjct: 756 --HSVANHLLQA 765



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 116/236 (49%), Gaps = 5/236 (2%)

Query: 238 LRIFYQ--MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
           LR F Q   LL GF  +   F+ ++KAC+S+S++  G+ LH    K        V  S++
Sbjct: 4   LRQFVQNFRLLSGFGTDHRVFLDVVKACASVSELTSGRALHGCVFKLGHIACTEVSKSVL 63

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRL-EGIKSNE 354
           +MY K   ++D    F  + + D   +  ++T  + +   E  ++ F+ M   +  K + 
Sbjct: 64  NMYAKCRRMDDCQKMFRQMDSVDPVVWNIVLTGLSVSCGRE-TMRFFKAMHFADEPKPSS 122

Query: 355 FTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGS-IDDAEAVFK 413
            T A  L  C  +    NG+ +HS  +KTG   D  V  ALV+MYAK G  I DA   F 
Sbjct: 123 VTFAILLPVCVRLGDSYNGKSMHSYIIKTGLEKDTLVGNALVSMYAKFGYIIPDAFTAFD 182

Query: 414 GSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMG 469
             A +D  SWN +I G+ ++ +   A  +F +ML E   P+  T   VL  C+ MG
Sbjct: 183 DIADKDVVSWNAIIAGFSENKMMADAFRSFCLMLKEPTEPNYATIANVLPVCASMG 238



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 4/139 (2%)

Query: 347 LEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSID 406
           L G  ++       +  C+ V+ L +GR LH    K GH+    VS +++ MYAKC  +D
Sbjct: 14  LSGFGTDHRVFLDVVKACASVSELTSGRALHGCVFKLGHIACTEVSKSVLNMYAKCRRMD 73

Query: 407 DAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMM--LDEGYVPDEITFVVVLSA 464
           D + +F+     D   WN+++ G +    G + +  F+ M   DE   P  +TF ++L  
Sbjct: 74  DCQKMFRQMDSVDPVVWNIVLTG-LSVSCGRETMRFFKAMHFADEPK-PSSVTFAILLPV 131

Query: 465 CSHMGLIEEGKKHFSSIKK 483
           C  +G    GK   S I K
Sbjct: 132 CVRLGDSYNGKSMHSYIIK 150


>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 700

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 170/515 (33%), Positives = 277/515 (53%), Gaps = 7/515 (1%)

Query: 91  SLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKP 150
           SL+++Y KC     A  +F  +    VV++  ++      G   E  K+F  M  S  +P
Sbjct: 60  SLINLYVKCSKLRLARYLFDEMSLRSVVSYNVLMGGYLHSGEHLEVVKLFKNMVSSLYQP 119

Query: 151 NQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVF 210
           N++V T+++ A   +G    G   H  + K+G      V ++LV MY +   V    +V 
Sbjct: 120 NEYVFTTVLSACAHSGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQVL 179

Query: 211 EAIAH------QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACS 264
           E+  H       D+  +N++ +   +     + + +  +M+ +G   +  T++ ++  C 
Sbjct: 180 ES-EHGNIDNDNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCG 238

Query: 265 SLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTA 324
            + D+G G Q+HA  +K  L  +  VG+ LVDM+ K G +  A   FD L N+++  +T+
Sbjct: 239 QIRDLGLGLQVHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTS 298

Query: 325 IITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTG 384
           ++T+Y Q GE E  L     M  EG  SNEFT A  LN  + +A L +G LLH+   K G
Sbjct: 299 LMTAYLQNGEFEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHGDLLHARVEKLG 358

Query: 385 HLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFR 444
               + V  AL+ MY+KCG ID +  VF     RD  +WN MI GY +HGLG++AL  F+
Sbjct: 359 IKNRVIVGNALINMYSKCGCIDSSYDVFFDMRNRDIITWNAMICGYSQHGLGKQALLLFQ 418

Query: 445 MMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRA 504
            ML  G  P+ +TFV VLSAC+H+ L+ EG  + + + K + + P ++H+ C++ +L RA
Sbjct: 419 DMLSAGECPNHVTFVGVLSACAHLALVNEGFYYLNQLMKHFKVEPGLEHYTCVVAVLCRA 478

Query: 505 GKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPS 564
           G   E ENF+  T++  + + W  LL AC+ H N  L  K AE +L+++P+    Y   S
Sbjct: 479 GMLEEAENFMRTTQVKWDVVAWRVLLNACNIHRNYNLGTKIAETILQMDPRDMGTYTLLS 538

Query: 565 DISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEV 599
           ++ A    W+  + +R ++  + +KKEP  SWIE+
Sbjct: 539 NMYAKARSWDSVTMIRKMMRERNVKKEPGVSWIEI 573



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 125/460 (27%), Positives = 221/460 (48%), Gaps = 18/460 (3%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           + LA+ +F  M   +VVS+N L+ GY  SG+  +V+ LF +M     + +++  +TVL  
Sbjct: 71  LRLARYLFDEMSLRSVVSYNVLMGGYLHSGEHLEVVKLFKNMVSSLYQPNEYVFTTVLSA 130

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYR-----IKDP 115
            A+SG +  G   H    + G     F+  SLV MYSKC   D AL+V          D 
Sbjct: 131 CAHSGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQVLESEHGNIDNDN 190

Query: 116 DVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIH 175
           D   + +++  L + G   EA ++   M +  V  +     S++    +  D   G  +H
Sbjct: 191 DAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIRDLGLGLQVH 250

Query: 176 AVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPD 235
           A + K G   D  VG+ LV M+ + G V    +VF+ + +++ V W +L + +      +
Sbjct: 251 AQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAYLQNGEFE 310

Query: 236 QGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLV 295
           + L +   M  +G   N  TF V+L A + ++ +  G  LHA   K  +    +VG +L+
Sbjct: 311 ETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHGDLLHARVEKLGIKNRVIVGNALI 370

Query: 296 DMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEF 355
           +MY K GC++ +   F  + N+D+  + A+I  Y+Q G  + AL  F+ M   G   N  
Sbjct: 371 NMYSKCGCIDSSYDVFFDMRNRDIITWNAMICGYSQHGLGKQALLLFQDMLSAGECPNHV 430

Query: 356 TLASCLNGCSPVATLANG-----RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEA 410
           T    L+ C+ +A +  G     +L+    V+ G  L+ +  T +VA+  + G +++AE 
Sbjct: 431 TFVGVLSACAHLALVNEGFYYLNQLMKHFKVEPG--LEHY--TCVVAVLCRAGMLEEAEN 486

Query: 411 VFKGSALR-DTASWNMMIGG---YVKHGLGEKALEAFRMM 446
             + + ++ D  +W +++     +  + LG K  E    M
Sbjct: 487 FMRTTQVKWDVVAWRVLLNACNIHRNYNLGTKIAETILQM 526



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 166/352 (47%), Gaps = 7/352 (1%)

Query: 191 NALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFK 250
           N+L+++Y++  ++     +F+ ++ +  VS+N L   +       + +++F  M+   ++
Sbjct: 59  NSLINLYVKCSKLRLARYLFDEMSLRSVVSYNVLMGGYLHSGEHLEVVKLFKNMVSSLYQ 118

Query: 251 PNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVA 310
           PN   F  +L AC+    V  G Q H    K  L  +H V +SLV MY K   ++ A   
Sbjct: 119 PNEYVFTTVLSACAHSGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQV 178

Query: 311 FDSLA-----NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCS 365
            +S       + D F Y +++ +  ++G    A++   +M  EG+  +  T  S +  C 
Sbjct: 179 LESEHGNIDNDNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCG 238

Query: 366 PVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNM 425
            +  L  G  +H+  +K G   D+FV + LV M+ KCG +  A  VF G   R+   W  
Sbjct: 239 QIRDLGLGLQVHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTS 298

Query: 426 MIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIY 485
           ++  Y+++G  E+ L     M  EG + +E TF V+L+A + M  +  G    + ++K+ 
Sbjct: 299 LMTAYLQNGEFEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHGDLLHARVEKL- 357

Query: 486 GITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           GI   +     +I++  + G      +   + +   + + W  ++   S HG
Sbjct: 358 GIKNRVIVGNALINMYSKCGCIDSSYDVFFDMR-NRDIITWNAMICGYSQHG 408



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 142/321 (44%), Gaps = 16/321 (4%)

Query: 264 SSLSDVGFGKQLHAHTIKHSLDGNH--------VVGTSLVDMYDKSGCLEDAGVAFDSLA 315
           ++  ++ FGK +H   +  +    H        +   SL+++Y K   L  A   FD ++
Sbjct: 23  ANTKNLNFGKSIHTQLLIRNQSSTHHSYREFNIIQLNSLINLYVKCSKLRLARYLFDEMS 82

Query: 316 NKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRL 375
            + + +Y  ++  Y  +GE    +K F+ M     + NE+   + L+ C+    +  G  
Sbjct: 83  LRSVVSYNVLMGGYLHSGEHLEVVKLFKNMVSSLYQPNEYVFTTVLSACAHSGRVFEGMQ 142

Query: 376 LHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA-----LRDTASWNMMIGGY 430
            H    K G +   FV ++LV MY+KC  +D A  V +          D   +N ++   
Sbjct: 143 CHGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQVLESEHGNIDNDNDAFCYNSVLNAL 202

Query: 431 VKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPT 490
           V+ G   +A+E    M+DEG V D +T+V V+  C  +  +  G +  + + K  G+T  
Sbjct: 203 VESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIRDLGLGLQVHAQLLK-GGLTFD 261

Query: 491 IKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLL 550
           +   + ++D+ G+ G            +   N +VW +L+ A   +G  E +  +    +
Sbjct: 262 VFVGSMLVDMFGKCGDVLSARKVFDGLQ-NRNVVVWTSLMTAYLQNGEFE-ETLNLLSCM 319

Query: 551 ELEPKMESNYVFPSDISATQG 571
           + E  M + + F   ++A  G
Sbjct: 320 DREGTMSNEFTFAVLLNAFAG 340


>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Glycine max]
          Length = 566

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 169/527 (32%), Positives = 271/527 (51%), Gaps = 31/527 (5%)

Query: 105 ALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTE 164
           A  +F +I  P +  W  +I          EA +++NLM    +  N      L +A   
Sbjct: 30  AHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMYNLMYRQGLLGNNLTYLFLFKACAR 89

Query: 165 TGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNAL 224
             D  CG +IHA + K GFES   V NAL++MY   G +    +VF+ +  +D VSWN+L
Sbjct: 90  VPDVSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQKVFDEMPERDLVSWNSL 149

Query: 225 FSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSL 284
              +   +   + L +F  M + G K +  T + ++ AC+SL + G    +  +  ++++
Sbjct: 150 VCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLGEWGVADAMVDYIEENNV 209

Query: 285 DGNHVVGTSLVDM-------------------------------YDKSGCLEDAGVAFDS 313
           + +  +G +L+DM                               Y K+G L  A   FD+
Sbjct: 210 EIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWNAMIMGYGKAGNLVAARELFDA 269

Query: 314 LANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG 373
           ++ +D+ ++T +ITSY+QAG+   AL+ F++M    +K +E T+AS L+ C+   +L  G
Sbjct: 270 MSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEITVASVLSACAHTGSLDVG 329

Query: 374 RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKH 433
              H    K     D++V  AL+ MY KCG ++ A  VFK    +D+ SW  +I G   +
Sbjct: 330 EAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKALEVFKEMRKKDSVSWTSIISGLAVN 389

Query: 434 GLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKH 493
           G  + AL+ F  ML E   P    FV +L AC+H GL+++G ++F S++K+YG+ P +KH
Sbjct: 390 GFADSALDYFSRMLREVVQPSHGAFVGILLACAHAGLVDKGLEYFESMEKVYGLKPEMKH 449

Query: 494 FACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELE 553
           + C++D+L R+G       FI E  +TP+ ++W  LL A   HGNI L E   +KLLEL+
Sbjct: 450 YGCVVDLLSRSGNLQRAFEFIKEMPVTPDVVIWRILLSASQVHGNIPLAEIATKKLLELD 509

Query: 554 PKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           P    NYV  S+  A   RW D   +R L+    ++K    S IE++
Sbjct: 510 PSNSGNYVLSSNTYAGSNRWEDAVKMRELMEKSNVQKPSGSSCIEME 556



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 106/464 (22%), Positives = 200/464 (43%), Gaps = 33/464 (7%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A  +F+ +    +  WN ++ G++ S    + + ++  M       +  +   + K  A 
Sbjct: 30  AHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMYNLMYRQGLLGNNLTYLFLFKACAR 89

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G  +HA  ++LG     ++S +L++MY  CG    A KVF  + + D+V+W ++
Sbjct: 90  VPDVSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQKVFDEMPERDLVSWNSL 149

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    Q    +E   +F  MR + VK +   +  +V A T  G+    +++   I +   
Sbjct: 150 VCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLGEWGVADAMVDYIEENNV 209

Query: 184 ESDTLVGNALVSMYMENGRV-----------------------SYGS--------RVFEA 212
           E D  +GN L+ MY   G V                        YG          +F+A
Sbjct: 210 EIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWNAMIMGYGKAGNLVAARELFDA 269

Query: 213 IAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFG 272
           ++ +D +SW  + + +       + LR+F +M+    KP+  T   +L AC+    +  G
Sbjct: 270 MSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEITVASVLSACAHTGSLDVG 329

Query: 273 KQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQA 332
           +  H +  K+ +  +  VG +L+DMY K G +E A   F  +  KD  ++T+II+  A  
Sbjct: 330 EAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKALEVFKEMRKKDSVSWTSIISGLAVN 389

Query: 333 GEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFV 391
           G A+ AL  F +M  E ++ +       L  C+    +  G     S+    G   +M  
Sbjct: 390 GFADSALDYFSRMLREVVQPSHGAFVGILLACAHAGLVDKGLEYFESMEKVYGLKPEMKH 449

Query: 392 STALVAMYAKCGSIDDA-EAVFKGSALRDTASWNMMIGGYVKHG 434
              +V + ++ G++  A E + +     D   W +++     HG
Sbjct: 450 YGCVVDLLSRSGNLQRAFEFIKEMPVTPDVVIWRILLSASQVHG 493



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 175/391 (44%), Gaps = 34/391 (8%)

Query: 3   LAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFA 62
           LA++VF  MPE ++VSWN+L+ GY +    ++V+ +F +M+    K    ++  V+    
Sbjct: 130 LAQKVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACT 189

Query: 63  NSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK--------- 113
           + G       +          +D +L  +L+DMY + GL   A  VF +++         
Sbjct: 190 SLGEWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWNA 249

Query: 114 ----------------------DPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPN 151
                                   DV++W  +IT   Q G   EA ++F  M ES VKP+
Sbjct: 250 MIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKPD 309

Query: 152 QFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFE 211
           +  + S++ A   TG    GE+ H  I KY  ++D  VGNAL+ MY + G V     VF+
Sbjct: 310 EITVASVLSACAHTGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKALEVFK 369

Query: 212 AIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGF 271
            +  +DSVSW ++ S        D  L  F +ML +  +P+   F+ IL AC+    V  
Sbjct: 370 EMRKKDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGAFVGILLACAHAGLVDK 429

Query: 272 GKQLHAHTIK-HSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSL-ANKDLFAYTAIITSY 329
           G +      K + L         +VD+  +SG L+ A      +    D+  +  ++++ 
Sbjct: 430 GLEYFESMEKVYGLKPEMKHYGCVVDLLSRSGNLQRAFEFIKEMPVTPDVVIWRILLSAS 489

Query: 330 AQAGEAEMALKCFRK-MRLEGIKSNEFTLAS 359
              G   +A    +K + L+   S  + L+S
Sbjct: 490 QVHGNIPLAEIATKKLLELDPSNSGNYVLSS 520



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 116/268 (43%), Gaps = 45/268 (16%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGD----------------------------- 31
           + LA+ VF  M   N+VSWNA++ GY ++G+                             
Sbjct: 229 VHLARGVFDQMQWRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQA 288

Query: 32  GQ--KVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAGQVVHAMAIRLGCALDKFLS 89
           GQ  + + LF  M + + K  + ++++VL   A++G +  G+  H    +     D ++ 
Sbjct: 289 GQFTEALRLFKEMMESKVKPDEITVASVLSACAHTGSLDVGEAAHDYIQKYDVKADIYVG 348

Query: 90  CSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK 149
            +L+DMY KCG+ + AL+VF  ++  D V+W +II+ L   G    A   F+ M    V+
Sbjct: 349 NALIDMYCKCGVVEKALEVFKEMRKKDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQ 408

Query: 150 PNQFVLTSLVRATTETGDQRCG----ESIHAVICKYGFESDTLVGNALVSMYMENGRVSY 205
           P+      ++ A    G    G    ES+  V   YG + +      +V +   +G +  
Sbjct: 409 PSHGAFVGILLACAHAGLVDKGLEYFESMEKV---YGLKPEMKHYGCVVDLLSRSGNL-- 463

Query: 206 GSRVFEAIAHQ----DSVSWNALFSRFQ 229
             R FE I       D V W  L S  Q
Sbjct: 464 -QRAFEFIKEMPVTPDVVIWRILLSASQ 490



 Score = 39.3 bits (90), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 10/137 (7%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A  VFK M + + VSW ++++G A +G     +  F  M     + S  +   +L  
Sbjct: 361 VEKALEVFKEMRKKDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGAFVGILLA 420

Query: 61  FANSGYIKAG-QVVHAMAIRLGCALD-KFLSCSLVDMYSKCGLADNALKVFYRIKD---- 114
            A++G +  G +   +M    G   + K   C +VD+ S+ G   N  + F  IK+    
Sbjct: 421 CAHAGLVDKGLEYFESMEKVYGLKPEMKHYGC-VVDLLSRSG---NLQRAFEFIKEMPVT 476

Query: 115 PDVVAWGAIITCLDQQG 131
           PDVV W  +++     G
Sbjct: 477 PDVVIWRILLSASQVHG 493


>gi|222630191|gb|EEE62323.1| hypothetical protein OsJ_17112 [Oryza sativa Japonica Group]
          Length = 591

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 179/575 (31%), Positives = 305/575 (53%), Gaps = 21/575 (3%)

Query: 42  MKDMEKKFSKFS-LSTVLKGFANSGYIKAGQVVHAMAI------RLGCALDKFLS----- 89
           M+D       ++  S +L      G ++ G  +HA  +      RL CA   +L      
Sbjct: 1   MRDASSGLLNYARFSGLLASCGREGDLRLGAALHAAVVKNPAHFRL-CASRPWLRHVLVA 59

Query: 90  -CSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSV 148
             SLV MY++CG  ++A +VF  ++  D V+W ++I      G   +A  +F  M  S  
Sbjct: 60  WNSLVSMYARCGRREDAARVFDEMRVRDAVSWNSLIAASRGAG---DALALFRRMLRSDA 116

Query: 149 KP-NQFVLTSLVRATTETGDQRCGES--IHAVICKYGFESDTLVGNALVSMYMENGRVSY 205
           +  ++   T+++      G         +H ++   GFE++  VGNALV+ Y E G  + 
Sbjct: 117 RACDRATFTTVLSECARAGAASLPACAMVHGLVVSCGFEAEVPVGNALVTAYFECGSPAS 176

Query: 206 GSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSS 265
             RVF  +A ++ ++W A+ S     E   +   +F QM+ +    N  T+   L AC+ 
Sbjct: 177 AERVFHGMAEKNVITWTAMISGMARAELYKESFSLFGQMI-RTVDANNATYSCALLACAR 235

Query: 266 LSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAI 325
                 G+Q+H   +K   + +  V + L+D+Y K G +EDA   F S    D    T I
Sbjct: 236 SLAAREGQQVHGLVVKAGFEDDLHVESGLMDVYSKCGLMEDALTVFRSCREPDEVFLTVI 295

Query: 326 ITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGH 385
           +  +AQ G  E A + F +M   G + +E T+++ L      A  A G+ +H++ +K   
Sbjct: 296 LVGFAQNGLEEKAFELFAEMVGAGNEIDENTVSAVLGAFGASAPFALGKQIHALVIKRCF 355

Query: 386 LLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRM 445
            ++ +V   LV MY+KCG + ++  VF     +++ SWN +I  + +HG G +  + F  
Sbjct: 356 GVNTYVCNGLVNMYSKCGELRESVRVFDEMPSKNSVSWNSIIAAFARHGHGSEVYQLFES 415

Query: 446 MLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAG 505
           M  +G  P ++TF+ +L ACSH+G  ++G +  +S+   YG+ P ++H+AC++D+LGRAG
Sbjct: 416 MKADGAKPTDVTFLSLLHACSHVGSAKKGLEILNSMSSQYGVLPRMEHYACVVDMLGRAG 475

Query: 506 KFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSD 565
              + ++FI +   T NAL+W+ L+GACS+HGN E+ +  AEKLL L+P   + YV  S+
Sbjct: 476 LLDDAKSFIEDGPFTDNALLWQALMGACSFHGNSEVGKYAAEKLLLLDPSCTAAYVLLSN 535

Query: 566 ISATQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           I +++GRW+D + V   +S  G++K+   SWIE++
Sbjct: 536 IYSSEGRWDDRAKVMKRMSEMGLRKDTGKSWIELE 570



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 118/441 (26%), Positives = 208/441 (47%), Gaps = 9/441 (2%)

Query: 2   ELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSM-KDMEKKFSKFSLSTVLKG 60
           E A RVF  M   + VSWN+L+     +GD    + LF  M +   +   + + +TVL  
Sbjct: 74  EDAARVFDEMRVRDAVSWNSLIAASRGAGDA---LALFRRMLRSDARACDRATFTTVLSE 130

Query: 61  FANSGY--IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVV 118
            A +G   + A  +VH + +  G   +  +  +LV  Y +CG   +A +VF+ + + +V+
Sbjct: 131 CARAGAASLPACAMVHGLVVSCGFEAEVPVGNALVTAYFECGSPASAERVFHGMAEKNVI 190

Query: 119 AWGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVI 178
            W A+I+ + +    +E+  +F  M   +V  N    +  + A   +   R G+ +H ++
Sbjct: 191 TWTAMISGMARAELYKESFSLFGQMIR-TVDANNATYSCALLACARSLAAREGQQVHGLV 249

Query: 179 CKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
            K GFE D  V + L+ +Y + G +     VF +    D V    +   F      ++  
Sbjct: 250 VKAGFEDDLHVESGLMDVYSKCGLMEDALTVFRSCREPDEVFLTVILVGFAQNGLEEKAF 309

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            +F +M+  G + +  T   +L A  + +    GKQ+HA  IK     N  V   LV+MY
Sbjct: 310 ELFAEMVGAGNEIDENTVSAVLGAFGASAPFALGKQIHALVIKRCFGVNTYVCNGLVNMY 369

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLA 358
            K G L ++   FD + +K+  ++ +II ++A+ G      + F  M+ +G K  + T  
Sbjct: 370 SKCGELRESVRVFDEMPSKNSVSWNSIIAAFARHGHGSEVYQLFESMKADGAKPTDVTFL 429

Query: 359 SCLNGCSPVATLANG-RLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
           S L+ CS V +   G  +L+S++ + G L  M     +V M  + G +DDA++  +    
Sbjct: 430 SLLHACSHVGSAKKGLEILNSMSSQYGVLPRMEHYACVVDMLGRAGLLDDAKSFIEDGPF 489

Query: 418 RDTA-SWNMMIGGYVKHGLGE 437
            D A  W  ++G    HG  E
Sbjct: 490 TDNALLWQALMGACSFHGNSE 510



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 92/183 (50%), Gaps = 1/183 (0%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ME A  VF+S  E + V    +L G+A++G  +K   LF  M     +  + ++S VL  
Sbjct: 274 MEDALTVFRSCREPDEVFLTVILVGFAQNGLEEKAFELFAEMVGAGNEIDENTVSAVLGA 333

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           F  S     G+ +HA+ I+    ++ ++   LV+MYSKCG    +++VF  +   + V+W
Sbjct: 334 FGASAPFALGKQIHALVIKRCFGVNTYVCNGLVNMYSKCGELRESVRVFDEMPSKNSVSW 393

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCG-ESIHAVIC 179
            +II    + G   E  ++F  M+    KP      SL+ A +  G  + G E ++++  
Sbjct: 394 NSIIAAFARHGHGSEVYQLFESMKADGAKPTDVTFLSLLHACSHVGSAKKGLEILNSMSS 453

Query: 180 KYG 182
           +YG
Sbjct: 454 QYG 456


>gi|4544411|gb|AAD22320.1| hypothetical protein [Arabidopsis thaliana]
 gi|91806147|gb|ABE65802.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 582

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 194/579 (33%), Positives = 294/579 (50%), Gaps = 9/579 (1%)

Query: 11  MPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAG 70
           MPE + V WNAL+ GY+ +G       LF  M       S  +L  +L      G++  G
Sbjct: 1   MPERDTVVWNALICGYSRNGYECDAWKLFIVMLQQGFSPSATTLVNLLPFCGQCGFVSQG 60

Query: 71  QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
           + VH +A + G  LD  +  +L+  YSKC    +A  +F  +KD   V+W  +I    Q 
Sbjct: 61  RSVHGVAAKSGLELDSQVKNALISFYSKCAELGSAEVLFREMKDKSTVSWNTMIGAYSQS 120

Query: 131 GCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVG 190
           G  +EA  +F  M E +V+ +   + +L+ A          E +H ++ K G  +D  V 
Sbjct: 121 GLQEEAITVFKNMFEKNVEISPVTIINLLSAHVSH------EPLHCLVVKCGMVNDISVV 174

Query: 191 NALVSMYMENGRVSYGSRVFEAIAHQDS-VSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
            +LV  Y   G +    R++ A A QDS V   ++ S + +    D  +  F +      
Sbjct: 175 TSLVCAYSRCGCLVSAERLY-ASAKQDSIVGLTSIVSCYAEKGDMDIAVVYFSKTRQLCM 233

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
           K +    + IL  C   S +  G  LH + IK  L    +V   L+ MY K   +E    
Sbjct: 234 KIDAVALVGILHGCKKSSHIDIGMSLHGYAIKSGLCTKTLVVNGLITMYSKFDDVETVLF 293

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG-IKSNEFTLASCLNGCSPVA 368
            F+ L    L ++ ++I+   Q+G A  A + F +M L G +  +  T+AS L GCS + 
Sbjct: 294 LFEQLQETPLISWNSVISGCVQSGRASTAFEVFHQMMLTGGLLPDAITIASLLAGCSQLC 353

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
            L  G+ LH   ++     + FV TAL+ MYAKCG+   AE+VFK      TA+WN MI 
Sbjct: 354 CLNLGKELHGYTLRNNFENENFVCTALIDMYAKCGNEVQAESVFKSIKAPCTATWNSMIS 413

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGIT 488
           GY   GL  +AL  +  M ++G  PDEITF+ VLSAC+H G ++EGK  F ++ K +GI+
Sbjct: 414 GYSLSGLQHRALSCYLEMREKGLKPDEITFLGVLSACNHGGFVDEGKICFRAMIKEFGIS 473

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEK 548
           PT++H+A M+ +LGRA  FTE    I +  + P++ VW  LL AC  H  +E+ E  A K
Sbjct: 474 PTLQHYALMVGLLGRACLFTEALYLIWKMDIKPDSAVWGALLSACIIHRELEVGEYVARK 533

Query: 549 LLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQG 587
           +  L+ K    YV  S++ AT+  W+D   VR ++   G
Sbjct: 534 MFMLDYKNGGLYVLMSNLYATEAMWDDVVRVRNMMKDNG 572



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 105/433 (24%), Positives = 204/433 (47%), Gaps = 9/433 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F+ M + + VSWN ++  Y++SG  ++ + +F +M +   + S  ++  +L    +
Sbjct: 95  AEVLFREMKDKSTVSWNTMIGAYSQSGLQEEAITVFKNMFEKNVEISPVTIINLLSAHVS 154

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                  + +H + ++ G   D  +  SLV  YS+CG   +A +++   K   +V   +I
Sbjct: 155 H------EPLHCLVVKCGMVNDISVVTSLVCAYSRCGCLVSAERLYASAKQDSIVGLTSI 208

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           ++C  ++G    A   F+  R+  +K +   L  ++    ++     G S+H    K G 
Sbjct: 209 VSCYAEKGDMDIAVVYFSKTRQLCMKIDAVALVGILHGCKKSSHIDIGMSLHGYAIKSGL 268

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            + TLV N L++MY +   V     +FE +     +SWN++ S             +F+Q
Sbjct: 269 CTKTLVVNGLITMYSKFDDVETVLFLFEQLQETPLISWNSVISGCVQSGRASTAFEVFHQ 328

Query: 244 MLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           M+L  G  P+  T   +L  CS L  +  GK+LH +T++++ +  + V T+L+DMY K G
Sbjct: 329 MMLTGGLLPDAITIASLLAGCSQLCCLNLGKELHGYTLRNNFENENFVCTALIDMYAKCG 388

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
               A   F S+       + ++I+ Y+ +G    AL C+ +MR +G+K +E T    L+
Sbjct: 389 NEVQAESVFKSIKAPCTATWNSMISGYSLSGLQHRALSCYLEMREKGLKPDEITFLGVLS 448

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVA--MYAKCGSIDDAEAVFKGSALRDT 420
            C+    +  G++     +K   +       AL+   +   C   +    ++K     D+
Sbjct: 449 ACNHGGFVDEGKICFRAMIKEFGISPTLQHYALMVGLLGRACLFTEALYLIWKMDIKPDS 508

Query: 421 ASWNMMIGGYVKH 433
           A W  ++   + H
Sbjct: 509 AVWGALLSACIIH 521


>gi|116831059|gb|ABK28484.1| unknown [Arabidopsis thaliana]
          Length = 583

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 194/579 (33%), Positives = 294/579 (50%), Gaps = 9/579 (1%)

Query: 11  MPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFANSGYIKAG 70
           MPE + V WNAL+ GY+ +G       LF  M       S  +L  +L      G++  G
Sbjct: 1   MPERDTVVWNALICGYSRNGYECDAWKLFIVMLQQGFSPSATTLVNLLPFCGQCGFVSQG 60

Query: 71  QVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQ 130
           + VH +A + G  LD  +  +L+  YSKC    +A  +F  +KD   V+W  +I    Q 
Sbjct: 61  RSVHGVAAKSGLELDSQVKNALISFYSKCAELGSAEVLFREMKDKSTVSWNTMIGAYSQS 120

Query: 131 GCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVG 190
           G  +EA  +F  M E +V+ +   + +L+ A          E +H ++ K G  +D  V 
Sbjct: 121 GLQEEAITVFKNMFEKNVEISPVTIINLLSAHVSH------EPLHCLVVKCGMVNDISVV 174

Query: 191 NALVSMYMENGRVSYGSRVFEAIAHQDS-VSWNALFSRFQDYESPDQGLRIFYQMLLKGF 249
            +LV  Y   G +    R++ A A QDS V   ++ S + +    D  +  F +      
Sbjct: 175 TSLVCAYSRCGCLVSAERLY-ASAKQDSIVGLTSIVSCYAEKGDMDIAVVYFSKTRQLCM 233

Query: 250 KPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGV 309
           K +    + IL  C   S +  G  LH + IK  L    +V   L+ MY K   +E    
Sbjct: 234 KIDAVALVGILHGCKKSSHIDIGMSLHGYAIKSGLCTKTLVVNGLITMYSKFDDVETVLF 293

Query: 310 AFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEG-IKSNEFTLASCLNGCSPVA 368
            F+ L    L ++ ++I+   Q+G A  A + F +M L G +  +  T+AS L GCS + 
Sbjct: 294 LFEQLQETPLISWNSVISGCVQSGRASTAFEVFHQMMLTGGLLPDAITIASLLAGCSQLC 353

Query: 369 TLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIG 428
            L  G+ LH   ++     + FV TAL+ MYAKCG+   AE+VFK      TA+WN MI 
Sbjct: 354 CLNLGKELHGYTLRNNFENENFVCTALIDMYAKCGNEVQAESVFKSIKAPCTATWNSMIS 413

Query: 429 GYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGIT 488
           GY   GL  +AL  +  M ++G  PDEITF+ VLSAC+H G ++EGK  F ++ K +GI+
Sbjct: 414 GYSLSGLQHRALSCYLEMREKGLKPDEITFLGVLSACNHGGFVDEGKICFRAMIKEFGIS 473

Query: 489 PTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEK 548
           PT++H+A M+ +LGRA  FTE    I +  + P++ VW  LL AC  H  +E+ E  A K
Sbjct: 474 PTLQHYALMVGLLGRACLFTEALYLIWKMDIKPDSAVWGALLSACIIHRELEVGEYVARK 533

Query: 549 LLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQG 587
           +  L+ K    YV  S++ AT+  W+D   VR ++   G
Sbjct: 534 MFMLDYKNGGLYVLMSNLYATEAMWDDVVRVRNMMKDNG 572



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 105/433 (24%), Positives = 204/433 (47%), Gaps = 9/433 (2%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A+ +F+ M + + VSWN ++  Y++SG  ++ + +F +M +   + S  ++  +L    +
Sbjct: 95  AEVLFREMKDKSTVSWNTMIGAYSQSGLQEEAITVFKNMFEKNVEISPVTIINLLSAHVS 154

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
                  + +H + ++ G   D  +  SLV  YS+CG   +A +++   K   +V   +I
Sbjct: 155 H------EPLHCLVVKCGMVNDISVVTSLVCAYSRCGCLVSAERLYASAKQDSIVGLTSI 208

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           ++C  ++G    A   F+  R+  +K +   L  ++    ++     G S+H    K G 
Sbjct: 209 VSCYAEKGDMDIAVVYFSKTRQLCMKIDAVALVGILHGCKKSSHIDIGMSLHGYAIKSGL 268

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            + TLV N L++MY +   V     +FE +     +SWN++ S             +F+Q
Sbjct: 269 CTKTLVVNGLITMYSKFDDVETVLFLFEQLQETPLISWNSVISGCVQSGRASTAFEVFHQ 328

Query: 244 MLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           M+L  G  P+  T   +L  CS L  +  GK+LH +T++++ +  + V T+L+DMY K G
Sbjct: 329 MMLTGGLLPDAITIASLLAGCSQLCCLNLGKELHGYTLRNNFENENFVCTALIDMYAKCG 388

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
               A   F S+       + ++I+ Y+ +G    AL C+ +MR +G+K +E T    L+
Sbjct: 389 NEVQAESVFKSIKAPCTATWNSMISGYSLSGLQHRALSCYLEMREKGLKPDEITFLGVLS 448

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVA--MYAKCGSIDDAEAVFKGSALRDT 420
            C+    +  G++     +K   +       AL+   +   C   +    ++K     D+
Sbjct: 449 ACNHGGFVDEGKICFRAMIKEFGISPTLQHYALMVGLLGRACLFTEALYLIWKMDIKPDS 508

Query: 421 ASWNMMIGGYVKH 433
           A W  ++   + H
Sbjct: 509 AVWGALLSACIIH 521


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 184/572 (32%), Positives = 288/572 (50%), Gaps = 51/572 (8%)

Query: 73  VHAMAIRLGC-----ALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCL 127
            HA  ++ G      AL K L   +V  +   GL   A+ VF   ++P+++ W  ++  L
Sbjct: 1   THAQMVKTGLHNTNYALSKLLELCVVSPHFD-GLP-YAVSVFETXQEPNLLIWNTMLRGL 58

Query: 128 DQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESDT 187
                     +++  M      PN +    L+++  ++     G  IHA + K G E D 
Sbjct: 59  ASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDR 118

Query: 188 LVGNALVSMYMENGRVS-----------------------YGSR--------VFEAIAHQ 216
               +L+SMY  NGR+                        Y SR        VF+ I  +
Sbjct: 119 YAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITER 178

Query: 217 DSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLH 276
           D VSWNA+ + + +    ++ L +F +M+    +P+  T + +L AC+    +  G+++H
Sbjct: 179 DVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIH 238

Query: 277 AHTIKHSLDGNHVVGTSL------VDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
                  +D +H  G+SL      + +Y K G +E A   F+ L+ KD+ ++  +I  Y 
Sbjct: 239 T-----LVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYT 293

Query: 331 QAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVK--TGHLLD 388
                + AL  F++M   G   N+ T+ S L  C+ +  +  GR +H    K   G    
Sbjct: 294 HMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNG 353

Query: 389 MFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLD 448
             + T+L+ MYAKCG I+ A  VF     +  +SWN MI G+  HG    A + F  M  
Sbjct: 354 SALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRK 413

Query: 449 EGYVPDEITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFT 508
            G  PD+IT V +LSACSH GL++ G+  F S+ + Y ITP ++H+ CMID+LG AG F 
Sbjct: 414 NGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFK 473

Query: 509 EIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISA 568
           E E  I    + P+ ++W +LL AC  HGN+EL E  A+KL+E+EP+   +YV  S+I A
Sbjct: 474 EAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYA 533

Query: 569 TQGRWNDFSGVRALLSSQGIKKEPSCSWIEVD 600
           T GRW D + +R +L+ +G+KK P CS IE+D
Sbjct: 534 TAGRWEDVARIREVLNGKGMKKVPGCSSIEID 565



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 120/408 (29%), Positives = 199/408 (48%), Gaps = 34/408 (8%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +  A  VF++  E N++ WN +L G A S D    + ++  M       + ++   +LK 
Sbjct: 33  LPYAVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKS 92

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADN---------------- 104
            A S   + G+ +HA  ++LGC LD++   SL+ MY++ G  ++                
Sbjct: 93  CAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSC 152

Query: 105 ---------------ALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVK 149
                          A KVF  I + DVV+W A+IT   +    +EA ++F  M  ++V+
Sbjct: 153 TALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVR 212

Query: 150 PNQFVLTSLVRATTETGDQRCGESIHAVI-CKYGFESDTLVGNALVSMYMENGRVSYGSR 208
           P++  L S++ A  ++G    G  IH ++   +GF S   + NA + +Y + G V   S 
Sbjct: 213 PDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASG 272

Query: 209 VFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSD 268
           +FE ++ +D VSWN L   +       + L +F +ML  G  PN  T + +L AC+ L  
Sbjct: 273 LFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGA 332

Query: 269 VGFGKQLHAHTIKH--SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAII 326
           +  G+ +H +  K    +     + TSL+DMY K G +E A   F+S+ +K L ++ A+I
Sbjct: 333 IDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMI 392

Query: 327 TSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGR 374
             +A  G A  A   F +MR  GI+ ++ TL   L+ CS    L  GR
Sbjct: 393 FGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGR 440



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 147/322 (45%), Gaps = 22/322 (6%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A++VF  + E +VVSWNA++ GY E+   ++ + LF  M     +  + +L +VL   A 
Sbjct: 168 ARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQ 227

Query: 64  SGYIKAGQVVHAMAIR---LGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
           SG I+ G+ +H +       G +L   +  + + +YSKCG  + A  +F  +   DVV+W
Sbjct: 228 SGSIELGREIHTLVDDHHGFGSSLK--IVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSW 285

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICK 180
             +I         +EA  +F  M  S   PN   + S++ A    G    G  IH  I K
Sbjct: 286 NTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDK 345

Query: 181 Y--GFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGL 238
              G  + + +  +L+ MY + G +    +VF ++ H+   SWNA+   F  +   +   
Sbjct: 346 RLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAF 405

Query: 239 RIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
            +F +M   G +P+  T + +L ACS    +  G+    H  K           S+   Y
Sbjct: 406 DLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGR----HIFK-----------SVTQDY 450

Query: 299 DKSGCLEDAGVAFDSLANKDLF 320
           + +  LE  G   D L +  LF
Sbjct: 451 NITPKLEHYGCMIDLLGHAGLF 472



 Score = 46.2 bits (108), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 74/167 (44%), Gaps = 7/167 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A +VF SM   ++ SWNA++ G+A  G       LF  M+    +    +L  +L  
Sbjct: 370 IEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSA 429

Query: 61  FANSGYIKAGQVVHAMAIR---LGCALDKFLSCSLVDMYSKCGLADNALKVFYRIK-DPD 116
            ++SG +  G+ +     +   +   L+ +  C ++D+    GL   A ++ + +  +PD
Sbjct: 430 CSHSGLLDLGRHIFKSVTQDYNITPKLEHY-GC-MIDLLGHAGLFKEAEEIIHMMPMEPD 487

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFN-LMRESSVKPNQFVLTSLVRAT 162
            V W +++      G  + A      LM         +VL S + AT
Sbjct: 488 GVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYAT 534


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 166/483 (34%), Positives = 265/483 (54%), Gaps = 10/483 (2%)

Query: 123 IITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYG 182
           +I  L ++G  ++A ++  L +ESS  P+Q     L+              +H  I   G
Sbjct: 52  LIQSLCKEGKLKQAIRV--LSQESS--PSQQTYELLILCCGHRSSLSDALRVHRHILDNG 107

Query: 183 FESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFY 242
            + D  +   L+ MY + G V Y  +VF+    +    WNALF         ++ L +++
Sbjct: 108 SDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYW 167

Query: 243 QMLLKGFKPNMCTFIVILKAC----SSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMY 298
           +M   G + +  T+  +LKAC     +++ +  GK++HAH  +     +  + T+LVDMY
Sbjct: 168 KMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMY 227

Query: 299 DKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKS--NEFT 356
            + GC++ A   F  +  +++ +++A+I  YA+ G+A  AL+ FR+M  E   S  N  T
Sbjct: 228 ARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVT 287

Query: 357 LASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSA 416
           + S L  C+ +A L  G+L+H   ++ G    + V +ALV MY +CG ++  + VF    
Sbjct: 288 MVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMH 347

Query: 417 LRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK 476
            RD  SWN +I  Y  HG G+KA++ F  ML  G  P  +TFV VL ACSH GL+EEGK+
Sbjct: 348 DRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKR 407

Query: 477 HFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWH 536
            F ++ + +GI P I+H+ACM+D+LGRA +  E    + + +  P   VW +LLG+C  H
Sbjct: 408 LFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIH 467

Query: 537 GNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKEPSCSW 596
           GN+EL E+ + +L  LEPK   NYV  +DI A    W++   V+ LL  +G++K P   W
Sbjct: 468 GNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCW 527

Query: 597 IEV 599
           +EV
Sbjct: 528 MEV 530



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 104/389 (26%), Positives = 175/389 (44%), Gaps = 20/389 (5%)

Query: 73  VHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGC 132
           VH   +  G   D FL+  L+ MYS  G  D A KVF + +   +  W A+   L   G 
Sbjct: 99  VHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGH 158

Query: 133 CQEAAKIFNLMRESSVKPNQFVLTSLVRATTET----GDQRCGESIHAVICKYGFESDTL 188
            +E   ++  M    V+ ++F  T +++A   +         G+ IHA + + G+ S   
Sbjct: 159 GEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVY 218

Query: 189 VGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQML--L 246
           +   LV MY   G V Y S VF  +  ++ VSW+A+ + +       + LR F +M+   
Sbjct: 219 IMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRET 278

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
           K   PN  T + +L+AC+SL+ +  GK +H + ++  LD    V ++LV MY + G LE 
Sbjct: 279 KDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEV 338

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
               FD + ++D+ ++ ++I+SY   G  + A++ F +M   G      T  S L  CS 
Sbjct: 339 GQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSH 398

Query: 367 VATLANGRLL-------HSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRD 419
              +  G+ L       H I  +  H         +V +  +   +D+A  + +      
Sbjct: 399 EGLVEEGKRLFETMWRDHGIKPQIEHY------ACMVDLLGRANRLDEAAKMVQDMRTEP 452

Query: 420 TAS-WNMMIGGYVKHGLGEKALEAFRMML 447
               W  ++G    HG  E A  A R + 
Sbjct: 453 GPKVWGSLLGSCRIHGNVELAERASRRLF 481



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 177/357 (49%), Gaps = 16/357 (4%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           ++ A++VF    +  +  WNAL      +G G++V+ L+  M  +  +  +F+ + VLK 
Sbjct: 128 VDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKA 187

Query: 61  FANS----GYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPD 116
              S     ++  G+ +HA   R G +   ++  +LVDMY++ G  D A  VF  +   +
Sbjct: 188 CVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRN 247

Query: 117 VVAWGAIITCLDQQGCCQEAAKIFN-LMRESS-VKPNQFVLTSLVRATTETGDQRCGESI 174
           VV+W A+I C  + G   EA + F  +MRE+    PN   + S+++A         G+ I
Sbjct: 248 VVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLI 307

Query: 175 HAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESP 234
           H  I + G +S   V +ALV+MY   G++  G RVF+ +  +D VSWN+L S +  +   
Sbjct: 308 HGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYG 367

Query: 235 DQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL-----HAHTIKHSLDGNHV 289
            + ++IF +ML  G  P   TF+ +L ACS    V  GK+L       H IK  ++    
Sbjct: 368 KKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHY-- 425

Query: 290 VGTSLVDMYDKSGCLEDAG-VAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM 345
               +VD+  ++  L++A  +  D         + +++ S    G  E+A +  R++
Sbjct: 426 --ACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRL 480


>gi|302783925|ref|XP_002973735.1| hypothetical protein SELMODRAFT_99756 [Selaginella moellendorffii]
 gi|300158773|gb|EFJ25395.1| hypothetical protein SELMODRAFT_99756 [Selaginella moellendorffii]
          Length = 836

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 181/570 (31%), Positives = 292/570 (51%), Gaps = 11/570 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMK-DMEKKFSKFSLSTVLK 59
           +E A++VF  +   +V+SW+ +++ Y +SG   + + ++  M+ +   + +  +   V+ 
Sbjct: 270 LEGARKVFNRLERKDVISWSTMISAYNQSGRHSEAIEIYRLMESETSVEPNAVTFVGVIG 329

Query: 60  GFANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVA 119
                G +  G  VH   + LG   D  +  +LV MY KCG  ++A K F R++  DV+ 
Sbjct: 330 ACTGCGDVIRGIQVHGRLVSLGLETDVAVGSALVQMYVKCGSLEDAKKAFDRVEKRDVLC 389

Query: 120 WGAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVIC 179
           W  +++   ++G  Q+  + +  M    V+PN    T+++ A +   D   G+ +H+ I 
Sbjct: 390 WNFMLSAYSERGSPQQVIEAYEAM---DVEPNAVTYTNVLIACSAMEDLAQGQKVHSRIV 446

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLR 239
             G E+D  +  AL+S+Y++   +    +VFEA+  +D + WN +   + D++   + LR
Sbjct: 447 SSGLETDMTMETALLSLYIKCRSLKSACQVFEAMGKKDVIPWNFMMVGYIDHDCDTEALR 506

Query: 240 IFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYD 299
           ++ +M   G + N  TF   LKACS + D+  G ++ A       + + V  T+L++MY 
Sbjct: 507 LYARMHEAGVEANNVTFANALKACSKIKDIETGSKVEAMITTKGFETDVVTDTALLNMYA 566

Query: 300 KSGCLEDAGVAFDSL--ANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTL 357
             G LE A   F S     +D+  +TA+I SYAQAG  E AL  ++ M  E IK N  T 
Sbjct: 567 ACGDLEAAKRVFGSRRGERRDVVFWTAMIASYAQAGRGEEALALYKTMLSEEIKPNSVTY 626

Query: 358 ASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSAL 417
            S L+ CS +  +  GR +HS        LD+ V  +L++MYA+CGS+ DA + F     
Sbjct: 627 TSVLSACSSLGNILEGRKIHSKLEGKAEELDVAVQNSLLSMYARCGSLRDAWSCFAKIHN 686

Query: 418 RDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKKH 477
           RD  SW  M+  +  HG   +ALE  R M   G  PD +TF  VL ACSH G +E G   
Sbjct: 687 RDVFSWTGMVAAFAHHGHSARALELVREMELCGVSPDAVTFQSVLHACSHEGSLERGWAS 746

Query: 478 FSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHG 537
           F S+   Y + P+  H+ CM+D+L RAG+  E    I    L   ++ W  LLGA   H 
Sbjct: 747 FVSMAVDYAVEPSKDHYLCMVDLLARAGRLAEAREVIQFVGLERESMGWMMLLGASRTHS 806

Query: 538 NIELDEKDA-----EKLLELEPKMESNYVF 562
           N+ +  + A     E  L + P + S YV 
Sbjct: 807 NLAMGVEAAQCVAPEDGLAMCPLLCSVYVL 836



 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 160/582 (27%), Positives = 268/582 (46%), Gaps = 45/582 (7%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           ++ VF  M + NV SW+ ++  YA++G   +   LF  M+    + +  +   VL   + 
Sbjct: 77  SREVFDGMQQKNVYSWSMMIGAYAQNGHRNEAFLLFERMESEGIRPNAVTCLHVLGACSY 136

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              +  G+ VHA         D  L  SLV+MY+KCG   +A  VF  +   D+V W A+
Sbjct: 137 QNELPFGKKVHAYISASEFKWDISLQTSLVNMYAKCGSPADAKAVFDSMARKDIVTWNAM 196

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
                  G   ++ K+   M    VKPN     S+ R ++     R  E     +   G+
Sbjct: 197 AGASVHNG---QSHKLLREMDLQGVKPNATTYASITRGSSTLTGCRAMEQ---RLLASGY 250

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
            S   V NALV++Y + G +    +VF  +  +D +SW+ + S +       + + I+  
Sbjct: 251 MSHVPVQNALVNVYAKCGDLEGARKVFNRLERKDVISWSTMISAYNQSGRHSEAIEIYRL 310

Query: 244 MLLK-GFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSG 302
           M  +   +PN  TF+ ++ AC+   DV  G Q+H   +   L+ +  VG++LV MY K G
Sbjct: 311 MESETSVEPNAVTFVGVIGACTGCGDVIRGIQVHGRLVSLGLETDVAVGSALVQMYVKCG 370

Query: 303 CLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLN 362
            LEDA  AFD +  +D+  +  ++++Y++ G  +  ++ +  M +E    N  T  + L 
Sbjct: 371 SLEDAKKAFDRVEKRDVLCWNFMLSAYSERGSPQQVIEAYEAMDVE---PNAVTYTNVLI 427

Query: 363 GCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTAS 422
            CS +  LA G+ +HS  V +G   DM + TAL+++Y KC S+  A  VF+    +D   
Sbjct: 428 ACSAMEDLAQGQKVHSRIVSSGLETDMTMETALLSLYIKCRSLKSACQVFEAMGKKDVIP 487

Query: 423 WNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK------ 476
           WN M+ GY+ H    +AL  +  M + G   + +TF   L ACS +  IE G K      
Sbjct: 488 WNFMMVGYIDHDCDTEALRLYARMHEAGVEANNVTFANALKACSKIKDIETGSKVEAMIT 547

Query: 477 ----------------------HFSSIKKIYGITPTIKH----FACMIDILGRAGKFTE- 509
                                    + K+++G     +     +  MI    +AG+  E 
Sbjct: 548 TKGFETDVVTDTALLNMYAACGDLEAAKRVFGSRRGERRDVVFWTAMIASYAQAGRGEEA 607

Query: 510 --IENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKL 549
             +   +   ++ PN++ + ++L ACS  GNI    K   KL
Sbjct: 608 LALYKTMLSEEIKPNSVTYTSVLSACSSLGNILEGRKIHSKL 649



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/392 (29%), Positives = 196/392 (50%), Gaps = 12/392 (3%)

Query: 92  LVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITCLDQQGCCQEAAKIFNLMRESSVKPN 151
           L+ ++ K G    + +VF  ++  +V +W  +I    Q G   EA  +F  M    ++PN
Sbjct: 64  LIQLHGKFGNTQKSREVFDGMQQKNVYSWSMMIGAYAQNGHRNEAFLLFERMESEGIRPN 123

Query: 152 QFVLTSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFE 211
                 ++ A +   +   G+ +HA I    F+ D  +  +LV+MY + G  +    VF+
Sbjct: 124 AVTCLHVLGACSYQNELPFGKKVHAYISASEFKWDISLQTSLVNMYAKCGSPADAKAVFD 183

Query: 212 AIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGF 271
           ++A +D V+WNA+           Q  ++  +M L+G KPN  T+  I +  S+L+    
Sbjct: 184 SMARKDIVTWNAMAGASVH---NGQSHKLLREMDLQGVKPNATTYASITRGSSTLT---- 236

Query: 272 GKQLHAHTIKHSLDGNHV-VGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYA 330
           G +     +  S   +HV V  +LV++Y K G LE A   F+ L  KD+ +++ +I++Y 
Sbjct: 237 GCRAMEQRLLASGYMSHVPVQNALVNVYAKCGDLEGARKVFNRLERKDVISWSTMISAYN 296

Query: 331 QAGEAEMALKCFRKMRLE-GIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDM 389
           Q+G    A++ +R M  E  ++ N  T    +  C+    +  G  +H   V  G   D+
Sbjct: 297 QSGRHSEAIEIYRLMESETSVEPNAVTFVGVIGACTGCGDVIRGIQVHGRLVSLGLETDV 356

Query: 390 FVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDE 449
            V +ALV MY KCGS++DA+  F     RD   WN M+  Y + G  ++ +EA+  M  E
Sbjct: 357 AVGSALVQMYVKCGSLEDAKKAFDRVEKRDVLCWNFMLSAYSERGSPQQVIEAYEAMDVE 416

Query: 450 GYVPDEITFVVVLSACSHMGLIEEGKKHFSSI 481
              P+ +T+  VL ACS M  + +G+K  S I
Sbjct: 417 ---PNAVTYTNVLIACSAMEDLAQGQKVHSRI 445



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 106/393 (26%), Positives = 193/393 (49%), Gaps = 15/393 (3%)

Query: 168 QRCGES-----IHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWN 222
           Q+C +S     ++A     G+  +    N L+ ++ + G       VF+ +  ++  SW+
Sbjct: 34  QQCQDSGELDVLYARFTGTGYLDNVYFRNWLIQLHGKFGNTQKSREVFDGMQQKNVYSWS 93

Query: 223 ALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKH 282
            +   +      ++   +F +M  +G +PN  T + +L ACS  +++ FGK++HA+    
Sbjct: 94  MMIGAYAQNGHRNEAFLLFERMESEGIRPNAVTCLHVLGACSYQNELPFGKKVHAYISAS 153

Query: 283 SLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCF 342
               +  + TSLV+MY K G   DA   FDS+A KD+  + A+  +    G++    K  
Sbjct: 154 EFKWDISLQTSLVNMYAKCGSPADAKAVFDSMARKDIVTWNAMAGASVHNGQSH---KLL 210

Query: 343 RKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTALVAMYAKC 402
           R+M L+G+K N  T AS   G S   TL   R +    + +G++  + V  ALV +YAKC
Sbjct: 211 REMDLQGVKPNATTYASITRGSS---TLTGCRAMEQRLLASGYMSHVPVQNALVNVYAKC 267

Query: 403 GSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYV-PDEITFVVV 461
           G ++ A  VF     +D  SW+ MI  Y + G   +A+E +R+M  E  V P+ +TFV V
Sbjct: 268 GDLEGARKVFNRLERKDVISWSTMISAYNQSGRHSEAIEIYRLMESETSVEPNAVTFVGV 327

Query: 462 LSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFITETKLTP 521
           + AC+  G +  G +    +  + G+   +   + ++ +  + G   + +      +   
Sbjct: 328 IGACTGCGDVIRGIQVHGRLVSL-GLETDVAVGSALVQMYVKCGSLEDAKKAFDRVE-KR 385

Query: 522 NALVWENLLGACSWHGNIELDEKDAEKLLELEP 554
           + L W  +L A S  G+ +    +A + +++EP
Sbjct: 386 DVLCWNFMLSAYSERGSPQ-QVIEAYEAMDVEP 417


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 162/444 (36%), Positives = 253/444 (56%), Gaps = 6/444 (1%)

Query: 156 TSLVRATTETGDQRCGESIHAVICKYGFESDTLVGNALVSMYMENGRVSYGSRVFEAIAH 215
           + +VR   E G Q     +HA IC+ G   + L+   LV++Y     ++    +F+ I+ 
Sbjct: 10  SCVVRKAIEPGKQ-----LHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISK 64

Query: 216 QDSVSWNALFSRFQDYESPDQGLRIFYQMLLKGFKPNMCTFIVILKACSSLSDVGFGKQL 275
           ++   WN +   +      +  + ++YQM   G  P+  TF  +LKACS+LS +  GK++
Sbjct: 65  RNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKI 124

Query: 276 HAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFDSLANKDLFAYTAIITSYAQAGEA 335
           H   I+  L+ +  VG +L+DMY K GC+E A   FD +  +D+  + +++ +Y+Q G+ 
Sbjct: 125 HKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQP 184

Query: 336 EMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLANGRLLHSIAVKTGHLLDMFVSTAL 395
           + +L   R M   G+K  E T    +   +    L  G+ LH  + + G   +  V TAL
Sbjct: 185 DESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTAL 244

Query: 396 VAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVKHGLGEKALEAFRMMLDEGYVPDE 455
           + MYAK GS++ A ++F+    +   SWN MI GY  HG   +AL+ F+ M  +  +PD 
Sbjct: 245 MDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMKGK-VLPDH 303

Query: 456 ITFVVVLSACSHMGLIEEGKKHFSSIKKIYGITPTIKHFACMIDILGRAGKFTEIENFIT 515
           ITFV VL+ACSH GL+ EGK HF S+   + I PT++H+ CMID+LG  G+  E    I 
Sbjct: 304 ITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIM 363

Query: 516 ETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLELEPKMESNYVFPSDISATQGRWND 575
           E ++ P+A VW  LL +C  HGN+E+ E   EKL+ELEP    NYV  S++ A  G+W+ 
Sbjct: 364 EMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQAGKWDG 423

Query: 576 FSGVRALLSSQGIKKEPSCSWIEV 599
            + +R L+ ++G+KK  +CSWIEV
Sbjct: 424 VARLRDLMMNKGLKKSIACSWIEV 447



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/402 (27%), Positives = 193/402 (48%), Gaps = 11/402 (2%)

Query: 67  IKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAIITC 126
           I+ G+ +HA   ++G + +  L+  LV++Y  C    NA  +F RI   ++  W  +I  
Sbjct: 17  IEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKRNLFLWNVMIRG 76

Query: 127 LDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGFESD 186
               G  + A  ++  MR+  + P++F    +++A +       G+ IH  + + G ESD
Sbjct: 77  YAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESD 136

Query: 187 TLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQMLL 246
             VG AL+ MY + G V    +VF+ I  +D V WN++ + +     PD+ L +   M  
Sbjct: 137 VFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAF 196

Query: 247 KGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLED 306
            G KP   TF++ + A +    +  GK+LH ++ +H  + N  V T+L+DMY KSG +  
Sbjct: 197 NGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNV 256

Query: 307 AGVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSP 366
           A   F+ L  K + ++ A+IT YA  G A  AL  F++M+ + +  +  T    L  CS 
Sbjct: 257 ARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMKGK-VLPDHITFVGVLAACSH 315

Query: 367 VATLANGRLLHSIAVKTGHLLDMFVS-TALVAMYAKCGSIDDA-EAVFKGSALRDTASWN 424
              L  G++     +   ++       T ++ +   CG +++A + + +     D   W 
Sbjct: 316 GGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWG 375

Query: 425 MMIGGYVKHG---LGEKALEAFRMMLDEGYVPDEITFVVVLS 463
            ++     HG   +GE ALE    +      PD+    V+LS
Sbjct: 376 ALLHSCKIHGNVEMGELALEKLVEL-----EPDDGGNYVILS 412



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 196/404 (48%), Gaps = 17/404 (4%)

Query: 4   AKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKGFAN 63
           A  +F  + + N+  WN ++ GYA +G  +  + L+  M+D      KF+   VLK  + 
Sbjct: 55  AHLLFDRISKRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSA 114

Query: 64  SGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAWGAI 123
              ++ G+ +H   IR G   D F+  +L+DMY+KCG  ++A +VF +I + DVV W ++
Sbjct: 115 LSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSM 174

Query: 124 ITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGESIHAVICKYGF 183
           +    Q G   E+  +  +M  + +KP +      + A+ + G    G+ +H    ++GF
Sbjct: 175 LATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGF 234

Query: 184 ESDTLVGNALVSMYMENGRVSYGSRVFEAIAHQDSVSWNALFSRFQDYESPDQGLRIFYQ 243
           ES+  V  AL+ MY ++G V+    +FE +  +  VSWNA+ + +  +   ++ L +F +
Sbjct: 235 ESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKE 294

Query: 244 MLLKGFKPNMCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVG--TSLVDMYDKS 301
           M  K   P+  TF+ +L ACS    +  GK +H  ++    +    V   T ++D+    
Sbjct: 295 MKGKVL-PDHITFVGVLAACSHGGLLNEGK-MHFRSMISDFNIWPTVQHYTCMIDLLGHC 352

Query: 302 GCLEDA-GVAFDSLANKDLFAYTAIITSYAQAGEAEMALKCFRKM-RLEG-------IKS 352
           G LE+A  +  +     D   + A++ S    G  EM      K+  LE        I S
Sbjct: 353 GRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILS 412

Query: 353 NEFTLASCLNGCSPVATL-ANGRLLHSIA---VKTGHLLDMFVS 392
           N +  A   +G + +  L  N  L  SIA   ++ G+ +  F+S
Sbjct: 413 NMYAQAGKWDGVARLRDLMMNKGLKKSIACSWIEVGNKVHAFLS 456



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 168/340 (49%), Gaps = 20/340 (5%)

Query: 253 MCTFIVILKACSSLSDVGFGKQLHAHTIKHSLDGNHVVGTSLVDMYDKSGCLEDAGVAFD 312
           M  +  +L++C     +  GKQLHA   +  +  N ++ T LV++Y     L +A + FD
Sbjct: 1   MSYYASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFD 60

Query: 313 SLANKDLFAYTAIITSYAQAGEAEMALKCFRKMRLEGIKSNEFTLASCLNGCSPVATLAN 372
            ++ ++LF +  +I  YA  G  E+A+  + +MR  G+  ++FT    L  CS ++ +  
Sbjct: 61  RISKRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEE 120

Query: 373 GRLLHSIAVKTGHLLDMFVSTALVAMYAKCGSIDDAEAVFKGSALRDTASWNMMIGGYVK 432
           G+ +H   +++G   D+FV  AL+ MYAKCG ++ A  VF     RD   WN M+  Y +
Sbjct: 121 GKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQ 180

Query: 433 HGLGEKALEAFRMMLDEGYVPDEITFVVVLSACSHMGLIEEGKK-HFSSIKKIYGITPTI 491
           +G  +++L   R+M   G  P E TFV+ ++A +  GL+ +GK+ H  S +  +G     
Sbjct: 181 NGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWR--HGFESND 238

Query: 492 KHFACMIDILGRAGKFTEIENFITETKLTPNALVWENLLGACSWHGNIELDEKDAEKLLE 551
           K    ++D+  ++G    +   + E       + W  ++   + HG+       A + L+
Sbjct: 239 KVKTALMDMYAKSGS-VNVARSLFELLEEKRVVSWNAMITGYAMHGH-------ANEALD 290

Query: 552 LEPKMESNYVFPSDISATQGRWNDFSGVRALLSSQGIKKE 591
           L  +M+   V P  I+        F GV A  S  G+  E
Sbjct: 291 LFKEMKGK-VLPDHIT--------FVGVLAACSHGGLLNE 321



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 104/227 (45%), Gaps = 3/227 (1%)

Query: 1   MELAKRVFKSMPELNVVSWNALLNGYAESGDGQKVMHLFCSMKDMEKKFSKFSLSTVLKG 60
           +E A++VF  + E +VV WN++L  Y+++G   + + L   M     K ++ +    +  
Sbjct: 153 VESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAA 212

Query: 61  FANSGYIKAGQVVHAMAIRLGCALDKFLSCSLVDMYSKCGLADNALKVFYRIKDPDVVAW 120
            A++G +  G+ +H  + R G   +  +  +L+DMY+K G  + A  +F  +++  VV+W
Sbjct: 213 SADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSW 272

Query: 121 GAIITCLDQQGCCQEAAKIFNLMRESSVKPNQFVLTSLVRATTETGDQRCGE-SIHAVIC 179
            A+IT     G   EA  +F  M+   V P+      ++ A +  G    G+    ++I 
Sbjct: 273 NAMITGYAMHGHANEALDLFKEMK-GKVLPDHITFVGVLAACSHGGLLNEGKMHFRSMIS 331

Query: 180 KYGFESDTLVGNALVSMYMENGRVSYGSR-VFEAIAHQDSVSWNALF 225
            +           ++ +    GR+    + + E     D+  W AL 
Sbjct: 332 DFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALL 378


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.321    0.135    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,099,589,773
Number of Sequences: 23463169
Number of extensions: 365780441
Number of successful extensions: 985513
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8307
Number of HSP's successfully gapped in prelim test: 2824
Number of HSP's that attempted gapping in prelim test: 789251
Number of HSP's gapped (non-prelim): 67627
length of query: 601
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 452
effective length of database: 8,863,183,186
effective search space: 4006158800072
effective search space used: 4006158800072
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)